Query psy8397
Match_columns 203
No_of_seqs 325 out of 1213
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:35:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-31 4.5E-36 232.4 16.2 135 7-185 85-232 (275)
2 3tui_C Methionine import ATP-b 100.0 5E-31 1.7E-35 237.5 15.2 135 6-185 105-252 (366)
3 1b0u_A Histidine permease; ABC 100.0 1.1E-30 3.8E-35 224.3 14.8 133 8-185 95-241 (262)
4 2olj_A Amino acid ABC transpor 100.0 2.2E-30 7.5E-35 223.2 15.6 133 8-185 102-247 (263)
5 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-30 4.8E-35 234.0 13.9 135 6-185 80-227 (359)
6 3rlf_A Maltose/maltodextrin im 100.0 2.5E-30 8.6E-35 234.0 14.7 135 6-185 75-222 (381)
7 3tif_A Uncharacterized ABC tra 100.0 4.4E-30 1.5E-34 217.3 15.2 132 7-184 84-232 (235)
8 1g6h_A High-affinity branched- 100.0 4.3E-30 1.5E-34 219.8 15.2 108 33-183 132-239 (257)
9 2onk_A Molybdate/tungstate ABC 100.0 2.4E-30 8.2E-35 220.0 12.5 134 7-185 71-215 (240)
10 2yz2_A Putative ABC transporte 100.0 1E-29 3.6E-34 218.5 15.6 134 8-185 80-226 (266)
11 2pcj_A ABC transporter, lipopr 100.0 1.2E-29 4.1E-34 213.0 15.4 129 7-181 83-223 (224)
12 1vpl_A ABC transporter, ATP-bi 100.0 9.7E-30 3.3E-34 218.3 15.1 133 8-185 90-234 (256)
13 1z47_A CYSA, putative ABC-tran 100.0 8E-30 2.7E-34 228.7 15.1 134 7-185 88-234 (355)
14 1oxx_K GLCV, glucose, ABC tran 100.0 7.9E-30 2.7E-34 228.3 14.5 135 6-185 82-229 (353)
15 1ji0_A ABC transporter; ATP bi 100.0 8.4E-30 2.9E-34 216.0 13.5 134 7-185 82-227 (240)
16 4g1u_C Hemin import ATP-bindin 100.0 1.6E-29 5.6E-34 217.8 15.2 132 9-185 88-236 (266)
17 2yyz_A Sugar ABC transporter, 100.0 1.1E-29 3.6E-34 228.2 14.5 135 6-185 75-222 (359)
18 1g29_1 MALK, maltose transport 100.0 1.4E-29 4.8E-34 228.2 15.3 135 6-185 81-228 (372)
19 2it1_A 362AA long hypothetical 100.0 1.1E-29 3.6E-34 228.4 13.9 135 6-185 75-222 (362)
20 2ihy_A ABC transporter, ATP-bi 100.0 6.1E-30 2.1E-34 222.0 11.7 136 7-185 98-251 (279)
21 3d31_A Sulfate/molybdate ABC t 100.0 1.4E-29 4.9E-34 226.4 13.9 134 7-185 73-216 (348)
22 1v43_A Sugar-binding transport 100.0 1.6E-29 5.6E-34 227.9 13.5 134 7-185 84-230 (372)
23 2qi9_C Vitamin B12 import ATP- 100.0 4E-29 1.4E-33 213.7 13.6 133 8-185 75-221 (249)
24 2nq2_C Hypothetical ABC transp 100.0 7E-29 2.4E-33 212.3 14.4 132 8-185 68-216 (253)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 8.9E-29 3E-33 210.8 13.4 129 9-182 83-229 (250)
26 2zu0_C Probable ATP-dependent 100.0 2.9E-28 1E-32 209.8 15.8 117 33-193 141-260 (267)
27 2pjz_A Hypothetical protein ST 99.9 7.9E-28 2.7E-32 207.3 12.7 118 22-185 87-214 (263)
28 2ff7_A Alpha-hemolysin translo 99.9 3.1E-27 1.1E-31 201.3 14.2 130 8-185 85-231 (247)
29 1mv5_A LMRA, multidrug resista 99.9 5.7E-27 1.9E-31 198.7 10.7 131 7-185 77-225 (243)
30 2ixe_A Antigen peptide transpo 99.9 5.1E-27 1.7E-31 202.6 10.3 131 8-185 95-244 (271)
31 2ghi_A Transport protein; mult 99.9 2.2E-26 7.4E-31 197.4 13.6 131 7-185 94-241 (260)
32 3nh6_A ATP-binding cassette SU 99.9 2.7E-26 9.1E-31 202.0 12.6 132 7-186 129-277 (306)
33 3gd7_A Fusion complex of cysti 99.9 1.3E-26 4.4E-31 210.1 9.1 131 7-185 95-241 (390)
34 2cbz_A Multidrug resistance-as 99.9 4.1E-26 1.4E-30 193.1 10.9 129 9-185 69-216 (237)
35 1sgw_A Putative ABC transporte 99.9 6.8E-26 2.3E-30 189.8 11.2 121 8-132 80-210 (214)
36 2pze_A Cystic fibrosis transme 99.9 2.4E-25 8.4E-30 187.3 11.3 129 9-185 72-217 (229)
37 3j16_B RLI1P; ribosome recycli 99.9 3.1E-25 1.1E-29 210.8 13.2 141 8-193 415-570 (608)
38 1yqt_A RNAse L inhibitor; ATP- 99.9 3.5E-25 1.2E-29 207.4 13.0 134 8-186 349-493 (538)
39 3b5x_A Lipid A export ATP-bind 99.9 9.3E-25 3.2E-29 205.3 13.9 131 7-185 418-566 (582)
40 3bk7_A ABC transporter ATP-bin 99.9 2.1E-24 7.3E-29 204.9 15.6 134 8-186 419-563 (607)
41 3b60_A Lipid A export ATP-bind 99.9 1E-24 3.5E-29 205.1 13.2 131 8-186 419-567 (582)
42 2yl4_A ATP-binding cassette SU 99.9 2E-24 6.7E-29 203.6 14.8 131 8-186 420-570 (595)
43 3ux8_A Excinuclease ABC, A sub 99.9 2.4E-24 8.2E-29 205.4 14.9 120 22-185 504-639 (670)
44 4a82_A Cystic fibrosis transme 99.9 2.8E-24 9.6E-29 202.1 14.2 132 7-186 416-564 (578)
45 3qf4_A ABC transporter, ATP-bi 99.9 4.2E-24 1.4E-28 201.5 14.1 131 8-186 419-566 (587)
46 3qf4_B Uncharacterized ABC tra 99.9 2.2E-24 7.4E-29 203.7 12.0 132 7-186 430-578 (598)
47 3ux8_A Excinuclease ABC, A sub 99.9 4.5E-24 1.6E-28 203.5 12.4 104 38-185 185-297 (670)
48 2bbs_A Cystic fibrosis transme 99.9 4.8E-24 1.7E-28 186.0 11.0 130 8-185 101-246 (290)
49 3ozx_A RNAse L inhibitor; ATP 99.9 7.9E-24 2.7E-28 198.5 12.2 122 21-185 343-476 (538)
50 1yqt_A RNAse L inhibitor; ATP- 99.9 9.2E-24 3.2E-28 197.8 10.9 92 24-115 125-219 (538)
51 3bk7_A ABC transporter ATP-bin 99.9 1.6E-23 5.6E-28 198.9 11.9 92 24-115 195-289 (607)
52 3j16_B RLI1P; ribosome recycli 99.9 1.7E-23 6E-28 198.8 11.3 102 33-177 200-301 (608)
53 3pih_A Uvrabc system protein A 99.9 4.5E-23 1.5E-27 203.5 14.6 119 23-185 767-901 (916)
54 2iw3_A Elongation factor 3A; a 99.9 2.5E-23 8.5E-28 206.3 12.7 121 19-185 507-634 (986)
55 3ozx_A RNAse L inhibitor; ATP 99.9 3.7E-23 1.3E-27 193.9 9.6 91 24-115 105-198 (538)
56 2r6f_A Excinuclease ABC subuni 99.9 1.9E-22 6.5E-27 199.4 13.9 109 33-185 823-941 (972)
57 2vf7_A UVRA2, excinuclease ABC 99.9 1.4E-22 4.9E-27 198.5 11.1 109 33-185 708-826 (842)
58 3pih_A Uvrabc system protein A 99.9 2.7E-22 9.4E-27 197.9 12.8 108 34-185 443-559 (916)
59 3g5u_A MCG1178, multidrug resi 99.9 3.2E-22 1.1E-26 203.0 13.6 133 6-186 1107-1258(1284)
60 2ygr_A Uvrabc system protein A 99.9 4.7E-22 1.6E-26 197.0 13.8 109 33-185 841-959 (993)
61 2r6f_A Excinuclease ABC subuni 99.9 6.2E-22 2.1E-26 195.7 13.5 109 32-185 482-599 (972)
62 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 5.7E-22 1.9E-26 157.5 9.9 67 48-114 51-123 (148)
63 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7.7E-22 2.6E-26 176.4 10.9 85 49-177 274-364 (365)
64 2ygr_A Uvrabc system protein A 99.9 1.2E-21 4E-26 194.2 12.4 110 31-185 498-616 (993)
65 4f4c_A Multidrug resistance pr 99.9 6.2E-22 2.1E-26 201.4 10.4 131 8-186 1155-1304(1321)
66 2vf7_A UVRA2, excinuclease ABC 99.9 2.2E-21 7.6E-26 190.1 13.4 111 31-186 356-475 (842)
67 3g5u_A MCG1178, multidrug resi 99.9 1.6E-21 5.6E-26 197.8 11.9 130 8-185 466-612 (1284)
68 2iw3_A Elongation factor 3A; a 99.8 6.8E-22 2.3E-26 196.1 7.5 103 32-180 877-981 (986)
69 4f4c_A Multidrug resistance pr 99.8 3.4E-21 1.2E-25 196.0 12.6 130 8-185 494-640 (1321)
70 4aby_A DNA repair protein RECN 99.8 1.5E-19 5.2E-24 161.3 13.5 80 55-179 296-381 (415)
71 1e69_A Chromosome segregation 99.8 3.8E-18 1.3E-22 149.2 11.9 67 47-114 212-282 (322)
72 3qkt_A DNA double-strand break 99.8 1.4E-18 4.8E-23 153.1 8.5 68 47-114 241-314 (339)
73 4ad8_A DNA repair protein RECN 99.7 3.1E-18 1E-22 158.8 9.5 64 50-114 392-458 (517)
74 3kta_B Chromosome segregation 99.7 2.8E-17 9.7E-22 133.5 11.0 65 48-113 58-126 (173)
75 2o5v_A DNA replication and rep 99.7 1.5E-17 5E-22 149.1 7.9 86 49-184 259-354 (359)
76 2npi_A Protein CLP1; CLP1-PCF1 99.6 6.9E-18 2.4E-22 155.6 -1.3 107 34-184 217-336 (460)
77 1ye8_A Protein THEP1, hypothet 99.6 2.6E-16 8.7E-21 127.6 7.5 64 47-113 69-139 (178)
78 4gp7_A Metallophosphoesterase; 99.6 5.9E-17 2E-21 129.4 2.4 75 41-116 71-161 (171)
79 3auy_A DNA double-strand break 99.6 1.4E-15 4.9E-20 135.3 11.5 81 33-114 243-346 (371)
80 1w1w_A Structural maintenance 99.6 1.8E-15 6.3E-20 136.8 10.4 65 49-113 328-396 (430)
81 1tf7_A KAIC; homohexamer, hexa 99.5 1.9E-14 6.6E-19 133.5 6.8 73 41-114 340-417 (525)
82 3b85_A Phosphate starvation-in 99.4 2.9E-15 1E-19 124.4 -3.2 53 58-116 108-160 (208)
83 1tq4_A IIGP1, interferon-induc 99.3 1E-13 3.5E-18 126.3 -1.7 92 33-126 135-248 (413)
84 3thx_A DNA mismatch repair pro 99.3 2.2E-12 7.7E-17 127.7 7.1 66 50-115 717-786 (934)
85 3thx_B DNA mismatch repair pro 99.2 4.4E-11 1.5E-15 118.3 8.2 77 39-116 720-798 (918)
86 1cr0_A DNA primase/helicase; R 99.2 1.1E-10 3.9E-15 99.6 9.5 63 51-114 126-197 (296)
87 2o8b_B DNA mismatch repair pro 99.1 3.9E-11 1.3E-15 119.9 6.9 73 42-115 839-913 (1022)
88 1nlf_A Regulatory protein REPA 99.1 1.7E-10 5.7E-15 98.0 7.7 78 35-115 99-182 (279)
89 1znw_A Guanylate kinase, GMP k 99.1 8.6E-13 2.9E-17 107.6 -6.8 78 39-128 119-201 (207)
90 2pt7_A CAG-ALFA; ATPase, prote 99.0 4.6E-10 1.6E-14 98.9 6.4 66 57-131 225-290 (330)
91 2w0m_A SSO2452; RECA, SSPF, un 99.0 1.4E-09 4.8E-14 87.7 7.9 61 54-114 103-168 (235)
92 2v9p_A Replication protein E1; 98.9 5.6E-12 1.9E-16 110.7 -8.0 87 34-189 183-269 (305)
93 2ehv_A Hypothetical protein PH 98.9 1.3E-09 4.3E-14 89.4 6.1 61 56-116 119-184 (251)
94 1tf7_A KAIC; homohexamer, hexa 98.9 1.9E-10 6.5E-15 106.6 -0.4 55 62-116 127-187 (525)
95 3b9q_A Chloroplast SRP recepto 98.8 2.6E-10 8.8E-15 99.5 -0.9 66 38-113 188-256 (302)
96 1wb9_A DNA mismatch repair pro 98.8 1.7E-09 5.8E-14 105.7 3.7 63 52-115 667-731 (800)
97 2og2_A Putative signal recogni 98.8 3.9E-10 1.3E-14 101.0 -1.6 66 38-113 245-313 (359)
98 2obl_A ESCN; ATPase, hydrolase 98.8 1.4E-10 4.8E-15 103.1 -5.1 80 50-184 167-253 (347)
99 2cvh_A DNA repair and recombin 98.7 3.8E-08 1.3E-12 79.1 7.8 65 51-115 81-157 (220)
100 3sop_A Neuronal-specific septi 98.7 8.4E-10 2.9E-14 94.7 -2.7 63 45-115 89-151 (270)
101 4a74_A DNA repair and recombin 98.7 3.1E-08 1.1E-12 80.0 6.3 62 54-115 99-181 (231)
102 1ewq_A DNA mismatch repair pro 98.7 1.7E-08 5.7E-13 98.3 5.4 60 53-115 634-699 (765)
103 2dpy_A FLII, flagellum-specifi 98.6 3.8E-10 1.3E-14 103.3 -6.0 78 52-184 256-342 (438)
104 1pui_A ENGB, probable GTP-bind 98.5 8.6E-08 3E-12 76.4 4.8 72 34-105 128-201 (210)
105 1pzn_A RAD51, DNA repair and r 98.5 8.1E-08 2.8E-12 85.0 4.8 60 56-115 208-287 (349)
106 3aez_A Pantothenate kinase; tr 98.5 1.9E-09 6.4E-14 94.4 -6.0 84 33-125 156-239 (312)
107 3asz_A Uridine kinase; cytidin 98.5 1E-10 3.6E-15 94.5 -13.3 83 32-114 67-161 (211)
108 1z6g_A Guanylate kinase; struc 98.4 9.6E-10 3.3E-14 90.7 -8.2 80 33-116 105-196 (218)
109 2eyu_A Twitching motility prot 98.4 6.5E-07 2.2E-11 76.2 7.4 61 62-131 88-148 (261)
110 2i3b_A HCR-ntpase, human cance 98.3 2.5E-08 8.5E-13 81.3 -3.4 56 49-108 78-139 (189)
111 3ec2_A DNA replication protein 98.3 2.3E-06 8E-11 67.3 7.6 50 68-117 96-146 (180)
112 2qnr_A Septin-2, protein NEDD5 98.2 1.3E-08 4.3E-13 88.3 -6.8 61 47-115 106-168 (301)
113 3jvv_A Twitching mobility prot 98.2 2E-06 6.7E-11 76.6 6.6 60 64-132 188-247 (356)
114 1n0w_A DNA repair protein RAD5 98.0 1.5E-05 5.2E-10 64.6 8.4 62 54-115 98-175 (243)
115 2kjq_A DNAA-related protein; s 98.0 7.7E-06 2.6E-10 63.7 5.9 47 68-115 79-126 (149)
116 2bdt_A BH3686; alpha-beta prot 97.9 1.6E-08 5.5E-13 80.3 -10.8 80 56-184 96-182 (189)
117 1rj9_A FTSY, signal recognitio 97.8 4.4E-07 1.5E-11 79.1 -4.5 57 55-116 203-260 (304)
118 2jeo_A Uridine-cytidine kinase 97.8 7.8E-07 2.7E-11 74.0 -3.3 67 35-114 99-165 (245)
119 1sxj_E Activator 1 40 kDa subu 97.8 4.5E-05 1.6E-09 65.5 7.7 72 69-142 131-205 (354)
120 3szr_A Interferon-induced GTP- 97.8 6.2E-05 2.1E-09 71.1 8.5 78 63-154 137-223 (608)
121 2r6a_A DNAB helicase, replicat 97.5 0.0007 2.4E-08 61.3 10.7 76 35-112 276-362 (454)
122 2bbw_A Adenylate kinase 4, AK4 97.4 1.2E-06 4.3E-11 72.5 -7.6 50 46-102 144-198 (246)
123 1nij_A Hypothetical protein YJ 97.4 1.1E-05 3.7E-10 70.1 -2.3 63 40-115 128-190 (318)
124 3lda_A DNA repair protein RAD5 97.4 0.00039 1.3E-08 62.7 7.7 44 71-114 272-328 (400)
125 1lw7_A Transcriptional regulat 97.3 4.3E-05 1.5E-09 67.2 0.4 64 50-113 254-328 (365)
126 2qag_C Septin-7; cell cycle, c 97.3 3.3E-05 1.1E-09 70.2 -0.6 57 54-115 118-178 (418)
127 2ewv_A Twitching motility prot 97.3 0.0004 1.4E-08 61.7 6.5 58 62-128 199-256 (372)
128 1udx_A The GTP-binding protein 97.3 8E-05 2.7E-09 67.6 1.9 71 36-114 237-308 (416)
129 4a1f_A DNAB helicase, replicat 97.0 0.0019 6.5E-08 57.1 8.1 116 19-157 80-207 (338)
130 1odf_A YGR205W, hypothetical 3 97.0 2.7E-05 9.2E-10 67.2 -4.0 40 49-88 129-168 (290)
131 2dr3_A UPF0273 protein PH0284; 96.7 0.0071 2.4E-07 48.6 8.5 45 71-115 127-174 (247)
132 1zp6_A Hypothetical protein AT 96.6 0.00014 4.7E-09 57.1 -2.3 56 49-112 104-159 (191)
133 3bh0_A DNAB-like replicative h 96.6 0.019 6.4E-07 49.4 10.8 137 20-171 103-264 (315)
134 2zr9_A Protein RECA, recombina 96.5 0.01 3.5E-07 52.2 9.2 54 61-114 126-198 (349)
135 2xau_A PRE-mRNA-splicing facto 96.2 0.0014 4.8E-08 63.5 1.6 73 50-123 186-260 (773)
136 2f1r_A Molybdopterin-guanine d 96.0 0.00016 5.6E-09 57.7 -4.9 50 54-103 103-162 (171)
137 2ius_A DNA translocase FTSK; n 96.0 0.00016 5.5E-09 67.4 -5.7 100 37-137 248-371 (512)
138 2ce7_A Cell division protein F 96.0 0.0099 3.4E-07 54.7 6.2 59 57-115 93-165 (476)
139 1s96_A Guanylate kinase, GMP k 95.7 0.015 5.2E-07 47.7 5.7 61 66-140 101-163 (219)
140 3euj_A Chromosome partition pr 95.5 0.025 8.5E-07 52.3 7.1 58 51-112 376-450 (483)
141 2e87_A Hypothetical protein PH 95.5 0.026 8.9E-07 49.2 6.6 66 48-115 225-293 (357)
142 1ni3_A YCHF GTPase, YCHF GTP-b 95.4 2.6E-05 8.8E-10 70.4 -13.4 51 72-125 139-192 (392)
143 1znw_A Guanylate kinase, GMP k 95.1 0.0011 3.8E-08 53.2 -3.1 27 144-171 176-202 (207)
144 1vma_A Cell division protein F 95.0 0.022 7.7E-07 49.3 4.8 59 35-101 151-212 (306)
145 1lw7_A Transcriptional regulat 94.5 0.019 6.5E-07 50.1 3.0 29 54-82 296-329 (365)
146 2z4s_A Chromosomal replication 94.5 0.05 1.7E-06 49.0 5.8 45 71-115 193-238 (440)
147 1ls1_A Signal recognition part 94.2 0.1 3.5E-06 44.6 6.8 62 38-101 148-210 (295)
148 2rcn_A Probable GTPase ENGC; Y 92.8 0.047 1.6E-06 48.5 2.4 38 31-69 291-328 (358)
149 2px0_A Flagellar biosynthesis 92.5 0.039 1.3E-06 47.3 1.4 35 61-99 173-207 (296)
150 2gza_A Type IV secretion syste 92.2 0.14 4.8E-06 44.9 4.7 63 56-127 236-298 (361)
151 1oix_A RAS-related protein RAB 91.9 0.1 3.5E-06 40.6 3.1 38 61-100 152-189 (191)
152 1sgw_A Putative ABC transporte 91.7 0.027 9.4E-07 46.2 -0.4 83 79-175 128-210 (214)
153 2qag_B Septin-6, protein NEDD5 91.7 0.08 2.7E-06 48.2 2.6 57 54-113 161-218 (427)
154 2r8r_A Sensor protein; KDPD, P 90.9 0.35 1.2E-05 40.4 5.6 49 65-113 77-126 (228)
155 1fnn_A CDC6P, cell division co 90.6 1 3.5E-05 38.2 8.5 44 71-115 124-170 (389)
156 3e70_C DPA, signal recognition 90.4 0.37 1.3E-05 41.9 5.5 48 60-114 231-279 (328)
157 2qm8_A GTPase/ATPase; G protei 90.2 0.1 3.5E-06 45.4 1.7 46 52-101 208-259 (337)
158 2oap_1 GSPE-2, type II secreti 88.9 0.00011 3.8E-09 68.2 -19.2 54 51-116 397-452 (511)
159 1g5t_A COB(I)alamin adenosyltr 88.4 0.47 1.6E-05 38.7 4.3 54 60-114 106-163 (196)
160 2q6t_A DNAB replication FORK h 88.3 11 0.00036 33.5 13.7 108 53-171 263-396 (444)
161 3b9p_A CG5977-PA, isoform A; A 87.8 0.75 2.6E-05 38.0 5.4 60 56-115 97-170 (297)
162 2eyu_A Twitching motility prot 87.3 0.00057 1.9E-08 57.9 -14.4 63 50-114 168-240 (261)
163 2f9l_A RAB11B, member RAS onco 87.2 0.41 1.4E-05 37.1 3.3 37 63-101 130-166 (199)
164 2qtf_A Protein HFLX, GTP-bindi 86.0 0.51 1.8E-05 41.5 3.6 65 33-101 279-352 (364)
165 1in4_A RUVB, holliday junction 85.6 0.039 1.3E-06 47.5 -3.9 44 42-102 151-194 (334)
166 3c8u_A Fructokinase; YP_612366 84.6 0.0044 1.5E-07 49.7 -9.7 30 53-82 110-140 (208)
167 1p9r_A General secretion pathw 84.1 0.014 4.6E-07 52.9 -7.7 37 37-77 278-314 (418)
168 1l8q_A Chromosomal replication 84.0 1.5 5.3E-05 36.7 5.6 45 70-114 96-141 (324)
169 2ewv_A Twitching motility prot 84.0 0.00096 3.3E-08 59.3 -15.2 60 54-115 283-352 (372)
170 2x8a_A Nuclear valosin-contain 83.9 0.0049 1.7E-07 52.2 -10.2 48 48-97 131-190 (274)
171 3k1j_A LON protease, ATP-depen 83.4 0.22 7.6E-06 46.4 -0.0 49 50-99 179-227 (604)
172 3bgw_A DNAB-like replicative h 83.3 7.1 0.00024 35.0 10.0 107 55-172 263-394 (444)
173 2z43_A DNA repair and recombin 83.0 0.99 3.4E-05 38.5 3.9 55 60-114 188-258 (324)
174 4g1u_C Hemin import ATP-bindin 82.6 0.19 6.7E-06 42.3 -0.7 26 47-72 170-196 (266)
175 2pt7_A CAG-ALFA; ATPase, prote 82.0 0.2 6.7E-06 43.5 -1.0 50 124-175 243-292 (330)
176 3szr_A Interferon-induced GTP- 80.8 0.83 2.8E-05 42.9 2.8 61 52-113 162-224 (608)
177 1v5w_A DMC1, meiotic recombina 80.8 1.7 5.7E-05 37.5 4.6 54 61-114 204-274 (343)
178 1lvg_A Guanylate kinase, GMP k 80.5 0.046 1.6E-06 43.5 -5.1 38 65-102 116-154 (198)
179 1tk9_A Phosphoheptose isomeras 80.1 7.2 0.00025 29.8 7.7 61 98-174 105-165 (188)
180 1jjv_A Dephospho-COA kinase; P 77.5 0.47 1.6E-05 37.1 0.0 94 35-139 47-141 (206)
181 2q6t_A DNAB replication FORK h 77.1 9 0.00031 34.0 8.4 59 53-113 291-362 (444)
182 2w58_A DNAI, primosome compone 76.6 1.5 5E-05 34.0 2.7 46 70-115 113-160 (202)
183 2xbl_A Phosphoheptose isomeras 76.2 8.4 0.00029 29.6 7.1 59 99-173 112-170 (198)
184 2b8t_A Thymidine kinase; deoxy 75.7 6.1 0.00021 32.3 6.4 39 72-115 89-127 (223)
185 1u94_A RECA protein, recombina 74.4 7.2 0.00024 34.1 6.8 54 61-114 128-200 (356)
186 3bos_A Putative DNA replicatio 74.1 2.4 8.2E-05 33.0 3.4 44 71-114 103-148 (242)
187 2xhz_A KDSD, YRBH, arabinose 5 73.6 10 0.00036 28.7 7.0 45 129-173 106-150 (183)
188 1m3s_A Hypothetical protein YC 73.4 11 0.00037 28.8 7.1 56 103-174 79-134 (186)
189 1b9m_A Protein (mode); DNA-bin 72.9 1.1 3.7E-05 36.8 1.1 41 33-74 53-93 (265)
190 1jcn_A Inosine monophosphate d 70.2 0.04 1.4E-06 50.7 -9.1 44 67-116 28-72 (514)
191 3hr8_A Protein RECA; alpha and 70.2 18 0.00061 31.7 8.4 54 61-114 126-198 (356)
192 2yva_A DNAA initiator-associat 70.2 16 0.00053 28.1 7.3 59 99-173 105-166 (196)
193 3sho_A Transcriptional regulat 69.9 12 0.0004 28.6 6.5 56 103-174 87-142 (187)
194 2qby_A CDC6 homolog 1, cell di 69.1 0.97 3.3E-05 38.0 -0.0 44 72-115 128-174 (386)
195 2orv_A Thymidine kinase; TP4A 69.1 8.1 0.00028 32.2 5.6 50 70-125 88-146 (234)
196 4ag6_A VIRB4 ATPase, type IV s 68.9 4.5 0.00015 35.0 4.2 46 71-116 261-309 (392)
197 2yv5_A YJEQ protein; hydrolase 68.4 0.29 9.8E-06 41.8 -3.5 35 33-67 265-300 (302)
198 3fj1_A Putative phosphosugar i 68.2 13 0.00043 32.1 7.0 46 129-174 101-146 (344)
199 3trj_A Phosphoheptose isomeras 68.2 15 0.00051 29.0 6.9 61 97-173 108-171 (201)
200 1sxj_D Activator 1 41 kDa subu 68.1 6.8 0.00023 32.6 5.1 69 72-142 133-204 (353)
201 3fxa_A SIS domain protein; str 68.0 9.9 0.00034 29.5 5.7 46 129-174 102-147 (201)
202 2i2w_A Phosphoheptose isomeras 66.9 16 0.00054 28.8 6.9 57 101-173 129-185 (212)
203 1x92_A APC5045, phosphoheptose 66.3 24 0.00081 27.2 7.7 58 101-174 111-171 (199)
204 2r6a_A DNAB helicase, replicat 65.8 44 0.0015 29.5 10.2 112 53-175 266-401 (454)
205 1vim_A Hypothetical protein AF 65.3 16 0.00055 28.5 6.5 46 129-174 99-144 (200)
206 3eua_A Putative fructose-amino 63.3 18 0.00063 30.8 7.0 46 129-174 84-129 (329)
207 3etn_A Putative phosphosugar i 63.1 23 0.0008 28.2 7.2 46 129-174 116-163 (220)
208 1jeo_A MJ1247, hypothetical pr 62.1 22 0.00076 26.8 6.6 53 103-172 82-134 (180)
209 1xp8_A RECA protein, recombina 62.0 25 0.00086 30.7 7.7 54 61-114 139-211 (366)
210 3hba_A Putative phosphosugar i 61.8 20 0.00068 30.8 7.0 46 129-174 100-145 (334)
211 1g6h_A High-affinity branched- 61.1 4.9 0.00017 33.1 2.8 66 78-155 147-212 (257)
212 2yz2_A Putative ABC transporte 60.7 5 0.00017 33.3 2.8 66 78-155 132-197 (266)
213 1xx6_A Thymidine kinase; NESG, 60.6 26 0.0009 27.6 7.0 39 72-115 81-119 (191)
214 2d2e_A SUFC protein; ABC-ATPas 60.1 4.4 0.00015 33.2 2.4 66 78-155 136-202 (250)
215 3kl4_A SRP54, signal recogniti 59.9 27 0.00094 31.3 7.7 51 63-113 170-223 (433)
216 2qgz_A Helicase loader, putati 59.5 4.8 0.00016 34.1 2.5 46 70-115 212-259 (308)
217 3t34_A Dynamin-related protein 58.7 7.6 0.00026 33.2 3.7 58 54-112 154-212 (360)
218 1njg_A DNA polymerase III subu 58.3 6.4 0.00022 30.0 2.9 67 72-140 126-195 (250)
219 4dgf_A Sulfate transporter sul 55.8 24 0.00081 25.7 5.6 43 71-113 50-93 (135)
220 3fkj_A Putative phosphosugar i 55.8 24 0.00081 30.4 6.4 45 129-173 99-143 (347)
221 3g68_A Putative phosphosugar i 55.7 16 0.00055 31.5 5.3 46 129-174 92-137 (352)
222 2zu0_C Probable ATP-dependent 54.9 5.1 0.00017 33.3 1.9 65 78-154 157-222 (267)
223 3llo_A Prestin; STAS domain, c 54.8 36 0.0012 24.7 6.5 42 72-113 63-105 (143)
224 4dgh_A Sulfate permease family 54.4 56 0.0019 23.3 9.3 43 71-113 47-90 (130)
225 3tbf_A Glucosamine--fructose-6 53.9 28 0.00096 30.2 6.6 47 128-174 110-157 (372)
226 3oiz_A Antisigma-factor antago 52.5 16 0.00056 25.3 4.1 42 71-112 42-84 (99)
227 3d8b_A Fidgetin-like protein 1 52.5 25 0.00086 30.0 6.0 54 61-114 165-231 (357)
228 3gfo_A Cobalt import ATP-bindi 52.3 7.1 0.00024 32.8 2.4 66 78-155 137-203 (275)
229 4gp7_A Metallophosphoesterase; 52.2 5.6 0.00019 30.3 1.6 89 66-158 66-161 (171)
230 3knz_A Putative sugar binding 50.3 21 0.00072 31.1 5.2 46 129-174 107-152 (366)
231 2pcj_A ABC transporter, lipopr 49.8 9.3 0.00032 30.7 2.6 65 78-154 134-198 (224)
232 3h4m_A Proteasome-activating n 49.3 14 0.00049 29.8 3.8 53 63-115 101-167 (285)
233 2poc_A D-fructose-6- PH, isome 49.3 41 0.0014 28.9 6.9 46 129-174 107-152 (367)
234 2yhs_A FTSY, cell division pro 48.2 12 0.0004 34.7 3.3 48 59-112 397-447 (503)
235 2a3n_A Putative glucosamine-fr 47.9 51 0.0017 28.2 7.2 45 129-173 112-156 (355)
236 2zj3_A Glucosamine--fructose-6 47.3 47 0.0016 28.7 7.0 46 129-174 117-162 (375)
237 1moq_A Glucosamine 6-phosphate 47.2 44 0.0015 28.7 6.7 46 129-174 109-155 (368)
238 3jvv_A Twitching mobility prot 46.4 4.3 0.00015 35.5 0.1 44 127-172 202-245 (356)
239 3cf0_A Transitional endoplasmi 46.2 25 0.00085 29.1 4.9 53 63-115 99-165 (301)
240 2i1q_A DNA repair and recombin 46.1 14 0.00046 31.0 3.2 53 61-113 190-258 (322)
241 1ji0_A ABC transporter; ATP bi 45.8 11 0.00038 30.6 2.5 65 78-154 133-197 (240)
242 3ny7_A YCHM protein, sulfate t 45.8 21 0.00072 25.5 3.8 42 71-113 44-86 (118)
243 1nri_A Hypothetical protein HI 44.9 48 0.0017 27.8 6.5 56 103-174 140-195 (306)
244 1b0u_A Histidine permease; ABC 44.1 12 0.00039 31.0 2.4 65 78-154 147-211 (262)
245 3co5_A Putative two-component 44.0 48 0.0016 24.0 5.7 42 72-114 75-116 (143)
246 1sbo_A Putative anti-sigma fac 43.5 72 0.0025 21.4 6.7 40 73-112 44-84 (110)
247 2ka5_A Putative anti-sigma fac 43.5 62 0.0021 23.0 6.2 40 72-111 51-91 (125)
248 2qi9_C Vitamin B12 import ATP- 43.4 13 0.00045 30.5 2.6 66 78-154 120-191 (249)
249 2ff7_A Alpha-hemolysin translo 43.3 13 0.00045 30.3 2.6 65 78-155 139-203 (247)
250 1vpl_A ABC transporter, ATP-bi 43.3 14 0.00048 30.5 2.8 65 78-154 140-204 (256)
251 2aml_A SIS domain protein; 469 43.2 43 0.0015 28.9 6.1 56 103-174 97-153 (373)
252 2j9r_A Thymidine kinase; TK1, 43.1 49 0.0017 26.9 6.0 39 72-115 101-139 (214)
253 2v1u_A Cell division control p 42.2 30 0.001 28.7 4.7 70 72-141 130-212 (387)
254 2olj_A Amino acid ABC transpor 41.9 14 0.00049 30.6 2.6 65 78-154 153-217 (263)
255 3iyg_B T-complex protein 1 sub 41.9 90 0.0031 28.4 8.2 96 70-168 219-337 (513)
256 2ghi_A Transport protein; mult 41.7 14 0.00047 30.5 2.5 66 77-155 148-213 (260)
257 3iyg_H T-complex protein 1 sub 41.0 77 0.0026 28.9 7.7 101 69-170 222-342 (515)
258 1q57_A DNA primase/helicase; d 40.7 1.9E+02 0.0066 25.5 10.9 95 67-171 320-440 (503)
259 1ega_A Protein (GTP-binding pr 40.7 28 0.00096 29.0 4.3 63 55-125 101-169 (301)
260 2chg_A Replication factor C sm 40.5 34 0.0012 25.4 4.5 70 71-142 101-173 (226)
261 3lda_A DNA repair protein RAD5 40.1 89 0.003 27.5 7.7 55 32-86 262-332 (400)
262 2ihy_A ABC transporter, ATP-bi 39.4 11 0.00036 31.7 1.5 65 78-154 155-221 (279)
263 3llm_A ATP-dependent RNA helic 39.3 39 0.0014 26.6 4.9 54 55-110 161-215 (235)
264 2nq2_C Hypothetical ABC transp 38.9 18 0.00063 29.6 2.8 65 78-154 122-187 (253)
265 1mhs_A Proton pump, plasma mem 38.6 65 0.0022 31.8 7.1 84 84-167 489-572 (920)
266 3b85_A Phosphate starvation-in 38.0 14 0.00049 29.4 2.0 37 131-174 135-171 (208)
267 1q57_A DNA primase/helicase; d 37.8 72 0.0024 28.4 6.8 53 61-114 341-404 (503)
268 2kln_A Probable sulphate-trans 37.5 29 0.00099 24.9 3.5 43 72-114 47-90 (130)
269 3cvj_A Putative phosphoheptose 36.3 52 0.0018 26.2 5.2 56 102-173 107-173 (243)
270 1gml_A T-complex protein 1 sub 35.9 71 0.0024 24.8 5.8 100 70-170 25-145 (178)
271 3io5_A Recombination and repai 34.8 1.1E+02 0.0036 26.8 7.1 58 57-114 92-172 (333)
272 2qz4_A Paraplegin; AAA+, SPG7, 33.9 86 0.0029 24.4 6.1 52 64-115 90-156 (262)
273 3bh0_A DNAB-like replicative h 33.5 1.8E+02 0.0061 24.1 8.3 57 55-113 162-230 (315)
274 2orw_A Thymidine kinase; TMTK, 33.5 32 0.0011 26.6 3.3 39 72-115 76-114 (184)
275 2onk_A Molybdate/tungstate ABC 32.9 19 0.00066 29.3 2.0 65 78-154 120-185 (240)
276 3iyg_G T-complex protein 1 sub 32.8 1.3E+02 0.0046 27.2 7.9 103 70-173 221-344 (515)
277 2dy1_A Elongation factor G; tr 32.7 73 0.0025 29.9 6.2 44 68-116 95-138 (665)
278 1th8_B Anti-sigma F factor ant 32.0 64 0.0022 22.0 4.5 42 72-113 42-84 (116)
279 1jr3_A DNA polymerase III subu 31.6 52 0.0018 27.3 4.5 70 71-142 118-190 (373)
280 2vo9_A EAD500, L-alanyl-D-glut 31.4 57 0.002 25.6 4.5 34 82-115 30-63 (179)
281 3iyg_E T-complex protein 1 sub 31.0 1.6E+02 0.0053 26.8 8.0 98 71-169 222-339 (515)
282 2ehv_A Hypothetical protein PH 29.9 34 0.0012 26.5 3.0 37 134-171 160-206 (251)
283 1ypw_A Transitional endoplasmi 29.5 42 0.0014 32.3 4.0 54 62-115 287-351 (806)
284 2bpl_A Glucosamine--fructose-6 29.4 1.1E+02 0.0039 28.1 6.9 47 128-174 348-395 (608)
285 1tmy_A CHEY protein, TMY; chem 29.3 1.2E+02 0.0042 19.9 5.6 71 31-113 14-84 (120)
286 1xwi_A SKD1 protein; VPS4B, AA 28.8 2.5E+02 0.0085 23.2 8.8 52 64-115 97-160 (322)
287 1iy2_A ATP-dependent metallopr 28.7 0.38 1.3E-05 39.8 -9.3 28 52-81 167-194 (278)
288 2vhj_A Ntpase P4, P4; non- hyd 28.7 87 0.003 27.2 5.6 57 57-114 167-236 (331)
289 4b4t_L 26S protease subunit RP 28.4 2.3E+02 0.008 25.2 8.5 55 61-115 263-331 (437)
290 2lpm_A Two-component response 28.2 58 0.002 23.7 3.8 76 24-113 13-88 (123)
291 3iyg_Q T-complex protein 1 sub 28.0 1.7E+02 0.0057 26.6 7.6 100 71-173 219-340 (512)
292 4h3u_A Hypothetical protein; s 27.9 50 0.0017 24.2 3.4 36 166-203 122-157 (158)
293 4dgh_A Sulfate permease family 27.9 1.5E+02 0.0052 20.9 6.1 73 73-156 19-91 (130)
294 1iqp_A RFCS; clamp loader, ext 27.8 1.8E+02 0.0061 23.2 7.2 70 71-142 109-181 (327)
295 3k7i_B IHH, HHG-2, indian hedg 27.7 30 0.001 27.9 2.2 95 70-182 69-178 (187)
296 1rj9_A FTSY, signal recognitio 27.5 1.6E+02 0.0054 24.7 6.9 31 127-157 228-259 (304)
297 3a10_A Response regulator; pho 26.2 1.4E+02 0.0048 19.5 6.3 69 31-112 13-81 (116)
298 4b4t_I 26S protease regulatory 26.0 1.3E+02 0.0043 27.2 6.3 54 62-115 265-332 (437)
299 4b4t_K 26S protease regulatory 25.9 1.6E+02 0.0056 26.2 7.0 54 62-115 255-322 (428)
300 3n1g_B Desert hedgehog protein 25.6 34 0.0012 27.1 2.2 44 71-114 62-111 (170)
301 2hqs_H Peptidoglycan-associate 25.6 1.4E+02 0.0048 21.2 5.5 45 69-113 1-46 (118)
302 3iyg_D T-complex protein 1 sub 25.6 2.4E+02 0.0083 25.5 8.3 101 70-173 220-347 (518)
303 3ko1_A Chaperonin; 9-fold symm 25.6 59 0.002 30.0 4.1 100 70-170 241-360 (553)
304 1oxx_K GLCV, glucose, ABC tran 25.4 46 0.0016 28.8 3.2 65 78-154 134-199 (353)
305 1jql_B DNA polymerase III, del 25.3 1.4E+02 0.0046 21.8 5.5 46 68-114 72-117 (140)
306 2ixe_A Antigen peptide transpo 25.2 34 0.0011 28.3 2.2 65 78-154 150-215 (271)
307 3odp_A Putative tagatose-6-pho 25.1 1.1E+02 0.0037 26.8 5.6 46 128-173 117-169 (393)
308 1a6d_A Thermosome (alpha subun 25.1 48 0.0016 30.5 3.4 100 70-170 231-350 (545)
309 1j5x_A Glucosamine-6-phosphate 25.0 1E+02 0.0035 26.1 5.4 44 129-172 110-153 (342)
310 3b60_A Lipid A export ATP-bind 24.9 39 0.0013 31.0 2.7 65 78-155 474-538 (582)
311 4b4t_J 26S protease regulatory 24.7 1.7E+02 0.0059 25.9 6.9 55 62-116 231-299 (405)
312 3q6v_A Beta-lactamase; metallo 24.7 63 0.0022 24.8 3.6 38 73-113 35-72 (233)
313 3rfu_A Copper efflux ATPase; a 24.6 3.3E+02 0.011 25.9 9.2 83 92-174 558-645 (736)
314 1srr_A SPO0F, sporulation resp 24.3 1.6E+02 0.0055 19.5 5.9 72 30-114 14-85 (124)
315 3cu5_A Two component transcrip 24.2 1.5E+02 0.005 20.6 5.3 39 71-113 48-86 (141)
316 1we3_A CPN60(groel); chaperoni 24.0 55 0.0019 30.2 3.6 47 70-121 213-259 (543)
317 1xp2_A EAD500, PLY500, L-alany 24.0 94 0.0032 24.8 4.5 34 82-115 30-63 (179)
318 1iok_A Chaperonin 60; chaperon 24.0 54 0.0018 30.3 3.5 106 70-180 215-336 (545)
319 1a6d_B Thermosome (beta subuni 23.9 74 0.0025 29.2 4.4 100 70-170 232-351 (543)
320 2kln_A Probable sulphate-trans 23.8 1.9E+02 0.0066 20.3 7.9 74 72-156 13-90 (130)
321 1jr3_D DNA polymerase III, del 23.6 57 0.0019 27.2 3.3 47 67-114 71-117 (343)
322 3tui_C Methionine import ATP-b 23.4 38 0.0013 29.8 2.2 65 78-154 157-222 (366)
323 4b4t_M 26S protease regulatory 23.0 1.8E+02 0.006 26.0 6.7 55 61-115 263-331 (434)
324 3hu3_A Transitional endoplasmi 22.9 59 0.002 29.4 3.5 52 64-115 289-351 (489)
325 1mvo_A PHOP response regulator 22.7 1.8E+02 0.0062 19.5 5.9 70 31-113 15-84 (136)
326 1ixz_A ATP-dependent metallopr 22.5 0.44 1.5E-05 38.7 -9.9 29 52-82 143-171 (254)
327 1dbw_A Transcriptional regulat 22.3 1.7E+02 0.0058 19.5 5.2 71 31-114 15-85 (126)
328 3zxn_A RSBS, anti-sigma-factor 22.0 1.9E+02 0.0065 20.6 5.6 44 71-114 41-85 (123)
329 3aq1_B Thermosome subunit; gro 22.0 38 0.0013 30.8 2.1 100 70-170 185-304 (500)
330 2qxy_A Response regulator; reg 22.0 1.9E+02 0.0064 19.7 5.5 72 30-115 15-86 (142)
331 3t6o_A Sulfate transporter/ant 21.9 1.7E+02 0.0058 20.3 5.3 43 71-113 46-90 (121)
332 3lua_A Response regulator rece 21.9 1.8E+02 0.0062 19.8 5.4 74 30-114 15-91 (140)
333 2jk1_A HUPR, hydrogenase trans 21.9 1.5E+02 0.0051 20.3 5.0 40 70-113 42-81 (139)
334 3p9d_G T-complex protein 1 sub 21.6 1.7E+02 0.0058 26.9 6.4 58 70-127 236-312 (550)
335 1kp8_A Groel protein; chaperon 21.5 89 0.003 28.9 4.4 106 70-180 214-335 (547)
336 3ruv_A Chaperonin, CPN; double 21.2 70 0.0024 29.4 3.7 100 70-170 227-346 (543)
337 3to5_A CHEY homolog; alpha(5)b 21.2 2.4E+02 0.0082 20.4 7.1 80 23-113 16-96 (134)
338 1lv7_A FTSH; alpha/beta domain 21.1 2.3E+02 0.0078 22.1 6.4 52 64-115 96-161 (257)
339 3cz5_A Two-component response 21.1 2.1E+02 0.0073 19.8 6.4 40 70-113 49-88 (153)
340 2rjn_A Response regulator rece 21.0 2E+02 0.0068 20.0 5.6 71 30-113 18-88 (154)
341 3cmw_A Protein RECA, recombina 21.0 2.2E+02 0.0075 30.2 7.6 52 61-112 797-867 (1706)
342 1ass_A Thermosome; chaperonin, 20.9 79 0.0027 24.1 3.4 100 71-171 20-139 (159)
343 2pr7_A Haloacid dehalogenase/e 20.9 2E+02 0.0068 19.3 7.1 39 89-127 19-57 (137)
344 4a1f_A DNAB helicase, replicat 20.8 2.5E+02 0.0086 24.0 7.0 58 54-113 137-205 (338)
345 3vfd_A Spastin; ATPase, microt 20.7 1.7E+02 0.0059 24.8 5.9 78 64-141 199-293 (389)
346 1pfk_A Phosphofructokinase; tr 20.7 2.1E+02 0.0073 24.5 6.5 47 62-113 176-224 (320)
347 3bgw_A DNAB-like replicative h 20.5 3.9E+02 0.013 23.4 8.4 58 54-113 290-359 (444)
348 3bt7_A TRNA (uracil-5-)-methyl 20.4 73 0.0025 27.2 3.4 36 72-115 295-330 (369)
349 3d31_A Sulfate/molybdate ABC t 20.4 58 0.002 28.2 2.8 65 78-154 121-186 (348)
350 3t15_A Ribulose bisphosphate c 20.3 2.2E+02 0.0075 23.2 6.4 13 70-82 97-109 (293)
351 3hzh_A Chemotaxis response reg 20.3 2.3E+02 0.0079 19.9 5.9 74 30-113 47-120 (157)
352 3n70_A Transport activator; si 20.2 87 0.003 22.6 3.4 41 72-114 76-116 (145)
353 3p9d_A T-complex protein 1 sub 20.2 1.7E+02 0.006 26.8 6.2 97 72-169 241-363 (559)
354 2zts_A Putative uncharacterize 20.1 1.2E+02 0.0042 23.1 4.5 46 69-114 132-182 (251)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.97 E-value=1.3e-31 Score=232.36 Aligned_cols=135 Identities=28% Similarity=0.356 Sum_probs=118.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.||....+++ .+||.|++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46677876544444 6899887632 4578899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|++++ ++|.|||++||++++
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~------------------------------------- 206 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI------------------------------------- 206 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-------------------------------------
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-------------------------------------
Confidence 999999999999999999999999997 558899999998763
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+..+||++++|++|++++.|+++++.
T Consensus 207 ------~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 207 ------VPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp ------GGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred ------HHHhCCEEEEEECCEEEEECCHHHHh
Confidence 56899999999999999999998875
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.97 E-value=5e-31 Score=237.49 Aligned_cols=135 Identities=25% Similarity=0.365 Sum_probs=118.1
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+.||.+. ++..+||.|++.. ++++.++|+.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 105 ~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P 182 (366)
T 3tui_C 105 RQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 182 (366)
T ss_dssp TTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred CcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35678887643 5677899997642 457889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~------------------------------------- 225 (366)
T 3tui_C 183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD------------------------------------- 225 (366)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-------------------------------------
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-------------------------------------
Confidence 999999999999999999999999999754 777777777753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|++++++
T Consensus 226 ------~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 226 ------VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp ------HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 477899999999999999999998765
No 3
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.97 E-value=1.1e-30 Score=224.32 Aligned_cols=133 Identities=23% Similarity=0.348 Sum_probs=115.0
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
..|.||.. .++..+||.|++.. .+++.++++.+||.+. .++++.+|||||||||+|||||+.+|
T Consensus 95 i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 172 (262)
T 1b0u_A 95 LTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 172 (262)
T ss_dssp EEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 56677653 35567899887643 2467889999999998 99999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
++|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 173 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-------------------------------------- 214 (262)
T 1b0u_A 173 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-------------------------------------- 214 (262)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH--------------------------------------
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence 999999999999999999999999999866778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 215 -----~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 -----FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp -----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred -----HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 367899999999999999999988764
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.97 E-value=2.2e-30 Score=223.24 Aligned_cols=133 Identities=27% Similarity=0.399 Sum_probs=115.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
..|.+|.. .++..+||.|++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 102 i~~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 102 VGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp EEEECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence 45667643 35567899887643 2467889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------------------------------------- 220 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG--------------------------------------- 220 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH---------------------------------------
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH---------------------------------------
Confidence 99999999999999999999999999866788888888753
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 221 ----~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 221 ----FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp ----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ----HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 367899999999999999999988764
No 5
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=1.4e-30 Score=234.00 Aligned_cols=135 Identities=21% Similarity=0.286 Sum_probs=117.6
Q ss_pred CceeEEEeeecccccCCCCHhHHHh------------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD------------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+.||.. .+++.+||.|++. .++++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 80 r~ig~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 80 RRLGYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp SCCEEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 4567888754 3567799999763 3567899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+..+..+++.++++.+ .|.|+|++|||++
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~------------------------------------- 200 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE------------------------------------- 200 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-------------------------------------
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------
Confidence 99999999999999999999998888754 4777777777754
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||||++|++|+++..|+++++.
T Consensus 201 ------ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 201 ------EALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ------HHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 467899999999999999999998875
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.97 E-value=2.5e-30 Score=233.97 Aligned_cols=135 Identities=23% Similarity=0.366 Sum_probs=119.2
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+.||.. .+++.+||.|++.. ++++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 75 r~ig~VfQ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 75 RGVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp SCEEEECTTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEecCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 4567888764 35677999997643 457899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~------------------------------------- 195 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV------------------------------------- 195 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-------------------------------------
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-------------------------------------
Confidence 999999999999999999999999999765 788888888754
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||+|++|++|+++..|+++++.
T Consensus 196 ------ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 196 ------EAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ------HHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 478899999999999999999998875
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=4.4e-30 Score=217.26 Aligned_cols=132 Identities=23% Similarity=0.338 Sum_probs=110.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...|.||.. .+++.+||.|++.. .+++.++++.+++.+. .++++.+|||||||||+|||||+
T Consensus 84 ~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~ 161 (235)
T 3tif_A 84 KIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA 161 (235)
T ss_dssp HEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence 356777653 35667899887532 3467889999999875 49999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~---------------------------------- 207 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN---------------------------------- 207 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH----------------------------------
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH----------------------------------
Confidence 999999999999999999999999999999754 777777777742
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
+..+||++++|++|+++..++++++
T Consensus 208 ----------~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 208 ----------VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp ----------HHTTSSEEEEEETTEEEEEEECC--
T ss_pred ----------HHHhCCEEEEEECCEEEEEcChhhh
Confidence 3478999999999999999988765
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.97 E-value=4.3e-30 Score=219.78 Aligned_cols=108 Identities=27% Similarity=0.445 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||
T Consensus 132 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 211 (257)
T 1g6h_A 132 EKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH 211 (257)
T ss_dssp HHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 46788999999999999999999999999999999999999999999999999999999999999999877888888888
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCccc
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSAN 183 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~ 183 (203)
++++ +..+||++++|++|++++.|++++
T Consensus 212 d~~~-------------------------------------------~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 212 RLDI-------------------------------------------VLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCST-------------------------------------------TGGGCSEEEEEETTEEEEEEESHH
T ss_pred CHHH-------------------------------------------HHHhCCEEEEEECCEEEEEeCHHH
Confidence 8753 567999999999999999999888
No 9
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=2.4e-30 Score=220.02 Aligned_cols=134 Identities=22% Similarity=0.308 Sum_probs=114.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIM 76 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vL 76 (203)
...|.+|.. .+++.+||.|++.. .+++.++++.+||.+..++++++||||||||++|||||+.+|++|
T Consensus 71 ~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 148 (240)
T 2onk_A 71 GIGFVPQDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp CCBCCCSSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred cEEEEcCCC--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 345666643 34567899887532 356889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
||||||+|||+.++..+++.|++++++ |+|||++||+++
T Consensus 149 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~---------------------------------------- 188 (240)
T 2onk_A 149 LLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI---------------------------------------- 188 (240)
T ss_dssp EEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH----------------------------------------
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH----------------------------------------
Confidence 999999999999999999999999754 778888887753
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 189 ---~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 189 ---EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp ---HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ---HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 367899999999999999999987764
No 10
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=1e-29 Score=218.54 Aligned_cols=134 Identities=26% Similarity=0.422 Sum_probs=115.0
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcCCc--ccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIGLV--LSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~L~--~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
..|.+|.....+ ..+||.|++.. .+++.++++.+||. +..++++.+|||||||||+|||||+.+|+
T Consensus 80 i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 80 IGIAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp EEEECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 556666532233 45799887643 35688999999999 89999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|++++++|.|||++||++++
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-------------------------------------- 200 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-------------------------------------- 200 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT--------------------------------------
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH--------------------------------------
Confidence 999999999999999999999999998668888888888753
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+..+||++++|++|++++.|+++++.
T Consensus 201 -----~~~~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 201 -----VINHVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp -----TGGGCSEEEEEETTEEEEEEEHHHHH
T ss_pred -----HHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 56789999999999999999887764
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.97 E-value=1.2e-29 Score=213.05 Aligned_cols=129 Identities=23% Similarity=0.330 Sum_probs=109.8
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.. .++..+||.|++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 83 ~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (224)
T 2pcj_A 83 KLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPI 160 (224)
T ss_dssp HEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCS
T ss_pred cEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 355666643 34567899987632 3467889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|++++++|.|||++||+++
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------------------------------------- 201 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--------------------------------------- 201 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH---------------------------------------
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH---------------------------------------
Confidence 99999999999999999999999999866777777777742
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCc
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSS 181 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~ 181 (203)
.+ .+||++++|++|++++.|+.
T Consensus 202 ----~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 202 ----LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp ----HH-TTSSEEEEEETTEEEEEEEC
T ss_pred ----HH-HhCCEEEEEECCEEEEEeee
Confidence 24 78999999999999998863
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=9.7e-30 Score=218.30 Aligned_cols=133 Identities=23% Similarity=0.274 Sum_probs=114.9
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPI 75 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~v 75 (203)
..|.+|.. .++..+||.|++.. .+++.++++.+||.+..++++++|||||||||+|||||+.+|++
T Consensus 90 i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 90 ISYLPEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp EEEECTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEcCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 45666643 34567899997643 24578899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 76 MFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 76 LlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
|||||||+|||+.++..+++.|++++++|+|||++||+++
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~---------------------------------------- 207 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML---------------------------------------- 207 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH----------------------------------------
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH----------------------------------------
Confidence 9999999999999999999999999867888888888753
Q ss_pred chhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 156 PSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 156 ~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 208 ---~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 208 ---EVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp ---HHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred ---HHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 367889999999999999999887764
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.96 E-value=8e-30 Score=228.69 Aligned_cols=134 Identities=22% Similarity=0.339 Sum_probs=116.9
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.||.. .+++.+||.|++.. ++++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 88 ~ig~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 88 NVGLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp SEEEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 466777643 35677999997642 3568899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-------------------------------------- 207 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-------------------------------------- 207 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH--------------------------------------
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH--------------------------------------
Confidence 99999999999999999999999999764 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 208 -----~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 208 -----EALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp -----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred -----HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999998774
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.96 E-value=7.9e-30 Score=228.30 Aligned_cols=135 Identities=21% Similarity=0.383 Sum_probs=117.4
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+.||.. .+++.+||.|++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 82 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 82 RKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp SCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 3466778753 35677999997632 457889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~------------------------------------- 202 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA------------------------------------- 202 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-------------------------------------
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------------------------
Confidence 999999999999999999999999999754 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 203 ------~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 203 ------DIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999998774
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=8.4e-30 Score=215.97 Aligned_cols=134 Identities=21% Similarity=0.328 Sum_probs=114.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-----------HHHHHHHHHHcC-CcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-----------IGLVDDILDTIG-LVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~L~~~~-L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...|.+|.. .++..+|+.|++.. .++++++++.++ +.+..++++.+|||||||||+|||||+.+|+
T Consensus 82 ~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 82 GIALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TEEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred CEEEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 356777643 35567899887532 346778899994 9888999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|||||||+|||+.++..+++.|++++++|+|||++||+++
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~--------------------------------------- 200 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL--------------------------------------- 200 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH---------------------------------------
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH---------------------------------------
Confidence 99999999999999999999999999867888888888753
Q ss_pred CchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 155 QPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 155 ~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 201 ----~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 201 ----GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp ----HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred ----HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 367899999999999999999888764
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=1.6e-29 Score=217.81 Aligned_cols=132 Identities=22% Similarity=0.388 Sum_probs=113.1
Q ss_pred eEEEeeecccccCCCCHhHHHh----------HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc------C
Q psy8397 9 IWCWQIISAQYSHRISVDDILD----------TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID------N 72 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~------~ 72 (203)
.+.+|.. .+...+||.|++. .++++.++++.+++.+..++++.+|||||||||+|||||++ +
T Consensus 88 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 88 AVMRQYS--ELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EEECSCC--CCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEEecCC--ccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 4455432 2445689998763 35678999999999999999999999999999999999999 9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.|++++++ |+|||++||+++
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~------------------------------------ 209 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN------------------------------------ 209 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH------------------------------------
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH------------------------------------
Confidence 9999999999999999999999999999754 457777777753
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 210 -------~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 210 -------LAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp -------HHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred -------HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 467899999999999999999999876
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.96 E-value=1.1e-29 Score=228.16 Aligned_cols=135 Identities=23% Similarity=0.290 Sum_probs=117.5
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+.||.. .+++.+||.|++.. ++++.++++.+||.+..++++++|||||||||+|||||+.+|
T Consensus 75 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 75 REVGMVFQNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp TTEEEECSSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3466777753 34577999998642 347889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~------------------------------------- 195 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA------------------------------------- 195 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-------------------------------------
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------------------------
Confidence 999999999999999999999999999764 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 196 ------~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 196 ------EAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ------HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 467899999999999999999998875
No 18
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=1.4e-29 Score=228.16 Aligned_cols=135 Identities=24% Similarity=0.345 Sum_probs=117.5
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....|.||.. .+++.+||.|++.. ++++.++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 81 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 81 RDIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SSEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3467778753 34577999997642 346889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~------------------------------------- 201 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV------------------------------------- 201 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-------------------------------------
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-------------------------------------
Confidence 999999999999999999999999999764 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 202 ------~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 202 ------EAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ------HHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 467899999999999999999998875
No 19
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.1e-29 Score=228.38 Aligned_cols=135 Identities=25% Similarity=0.332 Sum_probs=117.4
Q ss_pred CceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCC
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P 73 (203)
....+.||.. .+++.+||.|++.. +++++++++.+||.+..++++.+|||||||||+|||||+.+|
T Consensus 75 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 75 RNVGLVFQNW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp TTEEEECTTC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 3466777753 35577999997643 346889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 74 PIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 74 ~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
++|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~------------------------------------- 195 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA------------------------------------- 195 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-------------------------------------
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-------------------------------------
Confidence 999999999999999999999999999754 778888888753
Q ss_pred ecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 153 IHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 153 ~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 196 ------~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 196 ------EALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp ------HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ------HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 467899999999999999999998875
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.96 E-value=6.1e-30 Score=222.01 Aligned_cols=136 Identities=21% Similarity=0.378 Sum_probs=114.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
...|.+|.....+...+||.|++.. .+++.++++.+||.+..++++++|||||||||+|||||+
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 3556676433223345688886531 246788999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE--EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI--VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv--i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
.+|++|||||||+|||+.++..+++.|++++++|+|| |++||+++
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~--------------------------------- 224 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE--------------------------------- 224 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG---------------------------------
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH---------------------------------
Confidence 9999999999999999999999999999997657788 88888764
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 225 ----------~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 225 ----------EITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp ----------GCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred ----------HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 356789999999999999999988764
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.96 E-value=1.4e-29 Score=226.41 Aligned_cols=134 Identities=23% Similarity=0.335 Sum_probs=116.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhHH---------HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDTI---------GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF 77 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl 77 (203)
...+.||.. .+++.+||.|++... +++.++++.++|.+..++++++|||||||||+|||||+.+|++||
T Consensus 73 ~ig~v~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 73 DIAFVYQNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp TCEEECTTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred cEEEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 355777643 356779999986531 578899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCc
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 156 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~ 156 (203)
|||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 151 LDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~----------------------------------------- 189 (348)
T 3d31_A 151 LDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT----------------------------------------- 189 (348)
T ss_dssp EESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-----------------------------------------
T ss_pred EECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-----------------------------------------
Confidence 99999999999999999999999753 778888887753
Q ss_pred hhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 157 SATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 157 ~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 190 --~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 190 --EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp --HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred --HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 467899999999999999999988764
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.96 E-value=1.6e-29 Score=227.86 Aligned_cols=134 Identities=20% Similarity=0.276 Sum_probs=114.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
...+.||... +++.+||.|++.. ++++.++++.+||.+..++++.+|||||||||+|||||+.+|+
T Consensus 84 ~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 84 NISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp TEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4667887533 4577899997632 3578899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 IMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+..+..+++.|+++.++ |.|+|++||+++
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-------------------------------------- 203 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-------------------------------------- 203 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH--------------------------------------
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999999765 778888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
++..+||++++|++|+++..|+++++.
T Consensus 204 -----~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 204 -----EAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp -----HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred -----HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 467899999999999999999998875
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.96 E-value=4e-29 Score=213.65 Aligned_cols=133 Identities=21% Similarity=0.323 Sum_probs=115.3
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC------
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP------ 74 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~------ 74 (203)
..|.+|.. .++..+||.|++.. .+++.++++.+||.+..++++.+||||||||++|||||+.+|+
T Consensus 75 i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~ 152 (249)
T 2qi9_C 75 RAYLSQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAG 152 (249)
T ss_dssp EEEECSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTC
T ss_pred EEEECCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 45666643 34566899987643 4678899999999999999999999999999999999999999
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEee
Q psy8397 75 -IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTI 153 (203)
Q Consensus 75 -vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~ 153 (203)
+|||||||+|||+.++..+++.|+++.++|.|||++||+++
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-------------------------------------- 194 (249)
T 2qi9_C 153 QLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-------------------------------------- 194 (249)
T ss_dssp CEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------------------------------------
T ss_pred eEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------------------------------------
Confidence 99999999999999999999999999866788888888753
Q ss_pred cCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 154 HQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 154 h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|++++.|+++++.
T Consensus 195 -----~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 195 -----HTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp -----HHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred -----HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 367899999999999999999888764
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.96 E-value=7e-29 Score=212.31 Aligned_cols=132 Identities=25% Similarity=0.346 Sum_probs=112.0
Q ss_pred eeEEEeeecccccCCCCHhHHHhH----------------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhc
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT----------------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID 71 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~ 71 (203)
..|.+|.. .++..+||.|++.. .+++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus 68 i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 68 IGFVPQFF--SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS 145 (253)
T ss_dssp EEEECSCC--CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCCC--ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 44666543 34456788886521 3467889999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~----------------------------------- 190 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN----------------------------------- 190 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-----------------------------------
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-----------------------------------
Confidence 99999999999999999999999999999866 788888888753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+..+||++++|++|+ ++.|+++++.
T Consensus 191 --------~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 191 --------QVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp --------HHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred --------HHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 3678999999999999 9999888764
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.96 E-value=8.9e-29 Score=210.82 Aligned_cols=129 Identities=20% Similarity=0.254 Sum_probs=104.4
Q ss_pred eEEEeeecccccCCCCHhHHHhH---------------HHHHHHHHHHcCC-cccccccCCC-CCHHHHHHHHHHHHHhc
Q psy8397 9 IWCWQIISAQYSHRISVDDILDT---------------IGLVDDILDTIGL-VLSKHTLCGR-LSGGQKKRLSIALELID 71 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~L~~~~L-~~~~~~~v~~-LSgGqrqrl~iA~aL~~ 71 (203)
.+.+|.. .+++.+|+.|++.. .+++.++++.+|+ .+..++++++ |||||||||+|||||+.
T Consensus 83 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 83 FLAFQYP--VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp CCCCCCC--C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred EEeccCC--ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 3555532 34566888886532 2457789999999 5889999999 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|++|||||||+|||+.++..+++.|+++.++|+|||++||++++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~----------------------------------- 205 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI----------------------------------- 205 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-----------------------------------
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-----------------------------------
Confidence 999999999999999999999999999997668888888888652
Q ss_pred eecCchhHHHhh-cCEEEEEeCCeEEeeCCcc
Q psy8397 152 TIHQPSATIFEM-VDHLYVIAEGHCVYKGSSA 182 (203)
Q Consensus 152 ~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~ 182 (203)
+..+ ||++++|++|++++.|+++
T Consensus 206 --------~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 206 --------LNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp --------GGTSCCSEEEEEETTEEEEEESHH
T ss_pred --------HHHhcCCEEEEEECCEEEEEeCHH
Confidence 4566 5999999999999999887
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.96 E-value=2.9e-28 Score=209.78 Aligned_cols=117 Identities=22% Similarity=0.310 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCc-ccccccCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 33 GLVDDILDTIGLV-LSKHTLCG-RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 33 ~~v~~~L~~~~L~-~~~~~~v~-~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
+++.++++.+||. ...++++. +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++
T Consensus 141 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220 (267)
T ss_dssp HHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4577899999996 57899997 599999999999999999999999999999999999999999999987668888888
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh-cCEEEEEeCCeEEeeCCcccchhHHH
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM-VDHLYVIAEGHCVYKGSSANTIPYLQ 189 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G~i~~~g~~~~~~~~~~ 189 (203)
||+++ .+..+ ||++++|++|++++.|+++++.. ++
T Consensus 221 tHd~~-------------------------------------------~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~ 256 (267)
T 2zu0_C 221 THYQR-------------------------------------------ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LE 256 (267)
T ss_dssp CSSGG-------------------------------------------GGGTSCCSEEEEEETTEEEEEECTTHHHH-HH
T ss_pred eeCHH-------------------------------------------HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hh
Confidence 88864 24555 89999999999999999887643 34
Q ss_pred hcCC
Q psy8397 190 TIGL 193 (203)
Q Consensus 190 ~~g~ 193 (203)
..++
T Consensus 257 ~~~~ 260 (267)
T 2zu0_C 257 EQGY 260 (267)
T ss_dssp TTTC
T ss_pred hcch
Confidence 4443
No 27
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=7.9e-28 Score=207.25 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=105.8
Q ss_pred CCCHhHHHhH--------HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q psy8397 22 RISVDDILDT--------IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92 (203)
Q Consensus 22 ~~~~~~~~~~--------~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~ 92 (203)
.+|+.|++.. .+++.++++.+||. +..++++++||||||||++|||||+.+|++|||||||+|||+.++..
T Consensus 87 ~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 166 (263)
T 2pjz_A 87 GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166 (263)
T ss_dssp TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHH
T ss_pred CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHH
Confidence 7899987653 35688999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcC-EEEEEe
Q psy8397 93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD-HLYVIA 171 (203)
Q Consensus 93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d-~v~vl~ 171 (203)
+++.|+++.+ |||++||+++ .+..+|| ++++|+
T Consensus 167 l~~~L~~~~~---tviivtHd~~-------------------------------------------~~~~~~d~~i~~l~ 200 (263)
T 2pjz_A 167 ISRYIKEYGK---EGILVTHELD-------------------------------------------MLNLYKEYKAYFLV 200 (263)
T ss_dssp HHHHHHHSCS---EEEEEESCGG-------------------------------------------GGGGCTTSEEEEEE
T ss_pred HHHHHHHhcC---cEEEEEcCHH-------------------------------------------HHHHhcCceEEEEE
Confidence 9999998753 8888888864 3567899 999999
Q ss_pred CCeEEeeCCcccch
Q psy8397 172 EGHCVYKGSSANTI 185 (203)
Q Consensus 172 ~G~i~~~g~~~~~~ 185 (203)
+|++++.|+++++.
T Consensus 201 ~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 201 GNRLQGPISVSELL 214 (263)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEecCHHHHH
Confidence 99999999988775
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=3.1e-27 Score=201.30 Aligned_cols=130 Identities=25% Similarity=0.326 Sum_probs=105.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccccc-----------ccCCCCCHHHHHHHHHHHHHh
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKH-----------TLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~-----------~~v~~LSgGqrqrl~iA~aL~ 70 (203)
..|.+|... ++. .|+.|++.. .+++.++++.+++.+..+ +++.+|||||||||+|||||+
T Consensus 85 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 85 VGVVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp EEEECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 456666432 333 599887643 345777888888765544 456899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++.
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~---------------------------------- 206 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST---------------------------------- 206 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG----------------------------------
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH----------------------------------
Confidence 9999999999999999999999999999995 58888888888642
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+ ..||++++|++|++++.|+++++.
T Consensus 207 ---------~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 207 ---------V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp ---------G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred ---------H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 3 359999999999999999988764
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=5.7e-27 Score=198.71 Aligned_cols=131 Identities=28% Similarity=0.315 Sum_probs=107.5
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccc-----------cCCCCCHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKHT-----------LCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~-----------~v~~LSgGqrqrl~iA~a 68 (203)
...|.+|.. .++. .|+.|++.. .+++.++++.+++.+..++ ++.+|||||||||+||||
T Consensus 77 ~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 77 QIGFVSQDS--AIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp TCCEECCSS--CCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred hEEEEcCCC--cccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 456677643 2333 488887532 3567888999988766544 467999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--------------------------------- 199 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--------------------------------- 199 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH---------------------------------
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH---------------------------------
Confidence 999999999999999999999999999999987 5888888888853
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|++++.|+++++.
T Consensus 200 ----------~~-~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 200 ----------TI-VDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp ----------HH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred ----------HH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 23 469999999999999999988775
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=5.1e-27 Score=202.58 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=105.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH--------H--------HHHHHHHHHc--CCcccccccCCCCCHHHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT--------I--------GLVDDILDTI--GLVLSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~--------~~v~~~L~~~--~L~~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
..|.+|.. .++. .||.|++.. . ..+.++++.+ |+....++++.+|||||||||+|||||
T Consensus 95 i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 95 VAAVGQEP--LLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp EEEECSSC--CCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred EEEEecCC--cccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 45666643 2333 588887532 0 1234567777 788888999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
+.+|++|||||||+|||+.++..+++.|+++.+ +|+|||++||+++
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--------------------------------- 218 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--------------------------------- 218 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH---------------------------------
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH---------------------------------
Confidence 999999999999999999999999999999864 3777777777753
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+. .||++++|++|++++.|+++++.
T Consensus 219 ----------~~~-~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 219 ----------LAE-RAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp ----------HHT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred ----------HHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 244 59999999999999999988775
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.94 E-value=2.2e-26 Score=197.41 Aligned_cols=131 Identities=22% Similarity=0.239 Sum_probs=105.6
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...|.+|.. .++. .|+.|++.. .+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 94 ~i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 94 IIGIVPQDT--ILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp TEEEECSSC--CCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred cEEEEcCCC--cccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 356667643 2333 588887642 3456777877776543 2467789999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.++..+++.|+++.+ |+|||++||+++.
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~--------------------------------- 216 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST--------------------------------- 216 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG---------------------------------
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH---------------------------------
Confidence 999999999999999999999999999999864 7888888888642
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+ ..||++++|++|++++.|+++++.
T Consensus 217 ----------~-~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 217 ----------I-SSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp ----------S-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred ----------H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 3 359999999999999999988775
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=2.7e-26 Score=201.97 Aligned_cols=132 Identities=25% Similarity=0.316 Sum_probs=104.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVL-----------SKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~-----------~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...|.+|... ++ ..|+.|++.. .+++.++++.+++.+ ..+.+..+|||||||||+|||||
T Consensus 129 ~i~~v~Q~~~--lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL 205 (306)
T 3nh6_A 129 HIGVVPQDTV--LF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTI 205 (306)
T ss_dssp TEEEECSSCC--CC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred ceEEEecCCc--cC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHH
Confidence 3567776532 33 4588887642 345566666665544 34555678999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|||||||+|||+.+...+++.|+++.+ ++|+|++||+++
T Consensus 206 ~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~---------------------------------- 250 (306)
T 3nh6_A 206 LKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLS---------------------------------- 250 (306)
T ss_dssp HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHH----------------------------------
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChH----------------------------------
Confidence 999999999999999999999999999999863 677788887753
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+.. ||+|++|++|+|++.|+++++..
T Consensus 251 ---------~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 251 ---------TVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp ---------HHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred ---------HHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 2444 99999999999999999998763
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=210.09 Aligned_cols=131 Identities=21% Similarity=0.178 Sum_probs=111.4
Q ss_pred ceeEEEeeecccccCCCCHhHHHh-----HHHHHHHHHHHcCCcccccccCCC-----------CCHHHHHHHHHHHHHh
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILD-----TIGLVDDILDTIGLVLSKHTLCGR-----------LSGGQKKRLSIALELI 70 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~~~~L~~~~~~~v~~-----------LSgGqrqrl~iA~aL~ 70 (203)
...+.||... +++ +||.|++. .++++.++++.++|.+..++++.+ |||||||||+|||||+
T Consensus 95 ~ig~v~Q~~~--lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 95 AFGVIPQKVF--IFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp TEEEESCCCC--CCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCcc--cCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 4567776543 333 69988864 256788999999999999999988 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|||||||+|||+..+..+++.|+++. .|.|+|++||+++
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e----------------------------------- 215 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE----------------------------------- 215 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG-----------------------------------
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH-----------------------------------
Confidence 9999999999999999999999999998764 4678888888753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
....||+|++|++|+++..|+++++.
T Consensus 216 ---------~~~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 216 ---------AMLECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp ---------GGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred ---------HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 23569999999999999999998875
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.93 E-value=4.1e-26 Score=193.10 Aligned_cols=129 Identities=20% Similarity=0.248 Sum_probs=98.8
Q ss_pred eEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 9 IWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLV-----------LSKHTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~-----------~~~~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
.|.+|.. .+ ..+|+.|++.. .+...++++.+++. ...++++.+||||||||++|||||+.+
T Consensus 69 ~~v~Q~~--~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 145 (237)
T 2cbz_A 69 AYVPQQA--WI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 145 (237)
T ss_dssp EEECSSC--CC-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEcCCC--cC-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4556542 23 46788887643 12334444444432 135788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLK---ALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~---~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
|++|||||||+|||+.++..+++.|. ++. +|+|||++||+++.
T Consensus 146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~--------------------------------- 191 (237)
T 2cbz_A 146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY--------------------------------- 191 (237)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT---------------------------------
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH---------------------------------
Confidence 99999999999999999999999985 333 47788888887642
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
+ ..||++++|++|++++.|+++++.
T Consensus 192 ----------~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 192 ----------L-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp ----------G-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred ----------H-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 3 469999999999999999988765
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.93 E-value=6.8e-26 Score=189.81 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=101.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH----------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT----------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF 77 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl 77 (203)
..|.+|.. .++..+|+.|++.. .+++.++++.+|+.+. ++++.+||||||||++||+||+.+|++||
T Consensus 80 i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 80 IFFLPEEI--IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp EEEECSSC--CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEEeCCC--cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 45666543 34567899997643 2467889999999988 99999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST 132 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~ 132 (203)
|||||+|||+.++..+++.|+++.++|+|||++||++++ +...|+++.+.++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKYSTKI 210 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGGBC--
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEeCCcc
Confidence 999999999999999999999998779999999999875 567788876654443
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.92 E-value=2.4e-25 Score=187.30 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=96.8
Q ss_pred eEEEeeecccccCCCCHhHHHhH-----HHHHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 9 IWCWQIISAQYSHRISVDDILDT-----IGLVDDILDTIGLVLSK-----------HTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~L~~~~L~~~~-----------~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
.|.+|.. .++. .|+.|++.. ..++.++++.+++.+.. ++++.+||||||||++|||||+.+
T Consensus 72 ~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 72 SFCSQFS--WIMP-GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEECSSC--CCCS-BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEecCC--cccC-CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 3555532 2334 499887643 12345566666654332 334689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAM-LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~-l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++. ++++. +|+|||++||+++
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~------------------------------------ 191 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME------------------------------------ 191 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH------------------------------------
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH------------------------------------
Confidence 999999999999999999999996 45554 3667777777742
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|++++.|+++++.
T Consensus 192 -------~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 192 -------HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp -------HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred -------HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 23 459999999999999999988764
No 37
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.1e-25 Score=210.83 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=114.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD 79 (203)
..+.+|.... ....|+.+++.. ...+.++++.++|.+..++++.+|||||||||+|||||+++|++||||
T Consensus 415 i~~~~q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 415 VSMKPQKIAP--KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp EEEECSSCCC--CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred EEEecccccc--cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4555554332 234577765431 345778999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 80 EPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 80 EPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
|||+|||+.++..+++.|+++.+ .|.|||++|||++
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~------------------------------------------- 529 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI------------------------------------------- 529 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------
Confidence 99999999999999999999864 4777777777753
Q ss_pred HHHhhcCEEEEEeC--CeEEeeCCcccchh----HHHhcCC
Q psy8397 159 TIFEMVDHLYVIAE--GHCVYKGSSANTIP----YLQTIGL 193 (203)
Q Consensus 159 ~i~~~~d~v~vl~~--G~i~~~g~~~~~~~----~~~~~g~ 193 (203)
++..+|||+++|++ |++++.|+|++++. ++..++.
T Consensus 530 ~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~ 570 (608)
T 3j16_B 530 MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNV 570 (608)
T ss_dssp HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHHTC
T ss_pred HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhcCc
Confidence 47789999999996 89999999999874 3455553
No 38
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=3.5e-25 Score=207.43 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=111.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD 79 (203)
..|.+|... ....+||.++... .+++.++++.+++.+..++++.+|||||||||+|||+|+.+|++||||
T Consensus 349 i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 349 VAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp EEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 445665433 2356788876542 235678899999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 80 EPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 80 EPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
|||+|||+.++..+++.|+++.+ .|.|||++|||++
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~------------------------------------------- 463 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL------------------------------------------- 463 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-------------------------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------
Confidence 99999999999999999999874 4777777777753
Q ss_pred HHHhhcCEEEEEeC--CeEEeeCCcccchh
Q psy8397 159 TIFEMVDHLYVIAE--GHCVYKGSSANTIP 186 (203)
Q Consensus 159 ~i~~~~d~v~vl~~--G~i~~~g~~~~~~~ 186 (203)
++..+||++++|++ |++++.|+|+++..
T Consensus 464 ~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 464 MIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 47789999999986 78888999998765
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.92 E-value=9.3e-25 Score=205.35 Aligned_cols=131 Identities=25% Similarity=0.370 Sum_probs=106.3
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCcccccc-----------cCCCCCHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKHT-----------LCGRLSGGQKKRLSIALE 68 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~~-----------~v~~LSgGqrqrl~iA~a 68 (203)
...+.+|... +++ .|+.|++.. .+++.++++.+++.+..++ +..+||||||||++||||
T Consensus 418 ~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 418 HFALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred CeEEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 4566776432 333 488887642 3567788888887655444 457899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|++|+|||||+|||+.+.+.+.+.|+++.+ |+|+|++||+++
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--------------------------------- 540 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS--------------------------------- 540 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH---------------------------------
Confidence 9999999999999999999999999999999864 788888888864
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|++++.|+++++.
T Consensus 541 ----------~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 541 ----------TI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred ----------HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 23 469999999999999999998875
No 40
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=2.1e-24 Score=204.95 Aligned_cols=134 Identities=22% Similarity=0.236 Sum_probs=112.4
Q ss_pred eeEEEeeecccccCCCCHhHHHhH--------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT--------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD 79 (203)
..|.+|... ....+||.++... .+++.++++.+|+.+..++++++|||||||||+||+||+.+|++||||
T Consensus 419 i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 419 VAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp EEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 446666433 2356889886532 235778999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 80 EPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 80 EPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
|||+|||+.++..+++.|+++.+ .|.|||++|||++
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~------------------------------------------- 533 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL------------------------------------------- 533 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-------------------------------------------
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------
Confidence 99999999999999999999874 4777777777753
Q ss_pred HHHhhcCEEEEEeC--CeEEeeCCcccchh
Q psy8397 159 TIFEMVDHLYVIAE--GHCVYKGSSANTIP 186 (203)
Q Consensus 159 ~i~~~~d~v~vl~~--G~i~~~g~~~~~~~ 186 (203)
.+..+||++++|++ |++.+.|+|+++..
T Consensus 534 ~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 534 MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 46789999999986 88888999998864
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.92 E-value=1e-24 Score=205.05 Aligned_cols=131 Identities=26% Similarity=0.348 Sum_probs=106.4
Q ss_pred eeEEEeeecccccCCCCHhHHHhH-------HHHHHHHHHHcCCccccc-----------ccCCCCCHHHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT-------IGLVDDILDTIGLVLSKH-----------TLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~L~~~~L~~~~~-----------~~v~~LSgGqrqrl~iA~aL 69 (203)
..+.+|.. .+++ .|+.|++.. .+++.++++.+++.+..+ .+..+||||||||++|||||
T Consensus 419 i~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 419 VALVSQNV--HLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp EEEECSSC--CCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred CeEEccCC--cCCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 55667643 2334 489887642 356778888887765443 35578999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||+|||+.+.+.+.+.++++.+ |+|+|++||+++.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--------------------------------- 541 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--------------------------------- 541 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG---------------------------------
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH---------------------------------
Confidence 999999999999999999999999999999864 7888888888642
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+ ..||++++|++|++++.|+++++..
T Consensus 542 ----------~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 542 ----------I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp ----------T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ----------H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 3 4699999999999999999988753
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.91 E-value=2e-24 Score=203.62 Aligned_cols=131 Identities=27% Similarity=0.339 Sum_probs=103.9
Q ss_pred eeEEEeeecccccCCCCHhHHHh---------HHHHHHHHHHHcCCcccc-------ccc----CCCCCHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD---------TIGLVDDILDTIGLVLSK-------HTL----CGRLSGGQKKRLSIAL 67 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~L~~~~L~~~~-------~~~----v~~LSgGqrqrl~iA~ 67 (203)
..+.+|.. .+++ .|+.|++. ..+++.++++.+++.+.. +++ ..+||||||||++|||
T Consensus 420 i~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 420 IGTVSQEP--ILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp EEEECSSC--CCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred eEEEccCC--cccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 55666643 2333 59988763 246678889888875432 333 3789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
||+.+|++|+|||||+|||+.+++.+.+.|+++.+ |+|+|++||+++
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-------------------------------- 543 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-------------------------------- 543 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--------------------------------
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--------------------------------
Confidence 99999999999999999999999999999999875 677777777753
Q ss_pred eEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 148 tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
.+ ..||++++|++|++++.|+++++..
T Consensus 544 -----------~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 544 -----------TI-KNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp -----------HH-HHSSEEEEEETTEEEEEECSCC---
T ss_pred -----------HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 23 4699999999999999999998753
No 43
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=2.4e-24 Score=205.37 Aligned_cols=120 Identities=28% Similarity=0.419 Sum_probs=101.8
Q ss_pred CCCHhHHHhH------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHH
Q psy8397 22 RISVDDILDT------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTN 91 (203)
Q Consensus 22 ~~~~~~~~~~------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~ 91 (203)
.+|+.|++.. .+++.+.++.+++.. ..++++.+|||||||||+|||||+++| ++|||||||+|||+.++.
T Consensus 504 ~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~ 583 (670)
T 3ux8_A 504 DMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA 583 (670)
T ss_dssp TSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHH
T ss_pred hCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHH
Confidence 3677776542 345677888999964 568999999999999999999999987 499999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE-
Q psy8397 92 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI- 170 (203)
Q Consensus 92 ~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl- 170 (203)
.+++.|++++++|.|||++||+++ .+ ..||++++|
T Consensus 584 ~i~~~l~~l~~~g~tvi~vtHd~~-------------------------------------------~~-~~~d~i~~l~ 619 (670)
T 3ux8_A 584 RLLDVLHRLVDNGDTVLVIEHNLD-------------------------------------------VI-KTADYIIDLG 619 (670)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHH-------------------------------------------HH-TTCSEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHH-------------------------------------------HH-HhCCEEEEec
Confidence 999999999877777777777753 23 569999999
Q ss_pred -----eCCeEEeeCCcccch
Q psy8397 171 -----AEGHCVYKGSSANTI 185 (203)
Q Consensus 171 -----~~G~i~~~g~~~~~~ 185 (203)
++|++++.|+++++.
T Consensus 620 ~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 620 PEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp SSSGGGCCEEEEEECHHHHH
T ss_pred CCcCCCCCEEEEecCHHHHH
Confidence 899999999998874
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.91 E-value=2.8e-24 Score=202.08 Aligned_cols=132 Identities=30% Similarity=0.295 Sum_probs=104.2
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCccc-----------ccccCCCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLS-----------KHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~-----------~~~~v~~LSgGqrqrl~iA~aL 69 (203)
...+++|.. .+++ .|+.|++.. .+++.+.++..++.+. .+.+..+||||||||++|||||
T Consensus 416 ~i~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral 492 (578)
T 4a82_A 416 QIGLVQQDN--ILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 492 (578)
T ss_dssp TEEEECSSC--CCCS-SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred heEEEeCCC--ccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 356777643 3333 499988642 3456667776665443 2344568999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||+|||+.+.+.+.+.++++. +|+|+|++||+++.
T Consensus 493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--------------------------------- 538 (578)
T 4a82_A 493 LNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--------------------------------- 538 (578)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG---------------------------------
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH---------------------------------
Confidence 99999999999999999999999999999875 46788888888642
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+ ..||++++|++|++++.|+++++..
T Consensus 539 ----------~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 539 ----------I-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp ----------T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ----------H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 3 4599999999999999999998763
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=4.2e-24 Score=201.48 Aligned_cols=131 Identities=22% Similarity=0.228 Sum_probs=102.7
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHc-----------CCcccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTI-----------GLVLSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~-----------~L~~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
..+.+|.. .+++ .|+.|++.. .+++.+.++.. |+....+++..+||||||||++|||||+
T Consensus 419 i~~v~Q~~--~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQET--VLFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSSC--CCCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCC--cCcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 45666643 2333 488887632 23444444444 3444556778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|+|||||++||+.+.+.+.+.++++. +|+|+|++||+++
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~----------------------------------- 539 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP----------------------------------- 539 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-----------------------------------
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-----------------------------------
Confidence 9999999999999999999999999999874 4788888888753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
. ...||+|++|++|++++.|+++++..
T Consensus 540 --------~-~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 540 --------T-ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp --------H-HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred --------H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 2 35799999999999999999998863
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=2.2e-24 Score=203.73 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=105.1
Q ss_pred ceeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCcccccccC-----------CCCCHHHHHHHHHHHHH
Q psy8397 7 GTIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLVLSKHTLC-----------GRLSGGQKKRLSIALEL 69 (203)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~~~~~~~v-----------~~LSgGqrqrl~iA~aL 69 (203)
...+.+|.. .++ ..|+.|++.. .+++.++++.+++.+..+..+ .+||||||||++|||||
T Consensus 430 ~i~~v~Q~~--~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral 506 (598)
T 3qf4_B 430 SIGIVLQDT--ILF-STTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506 (598)
T ss_dssp HEEEECTTC--CCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeCCC--ccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 355666643 233 3589887642 345666776666655444443 68999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv 149 (203)
+.+|++|+|||||++||+.+...+.+.++++. +|+|+|++||+++.
T Consensus 507 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--------------------------------- 552 (598)
T 3qf4_B 507 LANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--------------------------------- 552 (598)
T ss_dssp HTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH---------------------------------
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH---------------------------------
Confidence 99999999999999999999999999999985 58888888888752
Q ss_pred EEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 150 i~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+ ..||+|++|++|++++.|+++++..
T Consensus 553 ----------~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 553 ----------I-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp ----------H-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred ----------H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 3 4599999999999999999998763
No 47
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=4.5e-24 Score=203.47 Aligned_cols=104 Identities=28% Similarity=0.461 Sum_probs=92.9
Q ss_pred HHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 38 ILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 38 ~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+++.+||.+. .++++++|||||||||+|||||+++|+ +|||||||+|||+.++..+++.|++++++|.|||++||++
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5888999865 699999999999999999999999998 9999999999999999999999999987777888888775
Q ss_pred CchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcccch
Q psy8397 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSANTI 185 (203)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~~~~ 185 (203)
+ . ...||++++| ++|++++.|+++++.
T Consensus 265 ~-------------------------------------------~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 D-------------------------------------------T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H-------------------------------------------H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H-------------------------------------------H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 3 2 3469999999 899999999998764
No 48
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=4.8e-24 Score=186.02 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=95.8
Q ss_pred eeEEEeeecccccCCCCHhHHHhH----HHHHHHHHHHcCCcccc-----------cccCCCCCHHHHHHHHHHHHHhcC
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT----IGLVDDILDTIGLVLSK-----------HTLCGRLSGGQKKRLSIALELIDN 72 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~L~~~~L~~~~-----------~~~v~~LSgGqrqrl~iA~aL~~~ 72 (203)
..|.+|.. .++. .|+.|++.. ..++.++++.+++.+.. +.++.+||||||||++|||||+.+
T Consensus 101 i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 101 ISFCSQNS--WIMP-GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp EEEECSSC--CCCS-SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCC--ccCc-ccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 34556543 2334 499887641 12345566666664332 234579999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l-~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~------------------------------------ 220 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME------------------------------------ 220 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH------------------------------------
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH------------------------------------
Confidence 9999999999999999999999864 4543 3677777777742
Q ss_pred eecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 152 TIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 152 ~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||++++|++|++++.|+++++.
T Consensus 221 -------~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 221 -------HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp -------HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred -------HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 23 469999999999999999998874
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=7.9e-24 Score=198.48 Aligned_cols=122 Identities=19% Similarity=0.208 Sum_probs=103.2
Q ss_pred CCCCHhHHHhH---------HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q psy8397 21 HRISVDDILDT---------IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91 (203)
Q Consensus 21 ~~~~~~~~~~~---------~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~ 91 (203)
...||.+++.. ...++++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 343 ~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~ 422 (538)
T 3ozx_A 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERY 422 (538)
T ss_dssp CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 35788876543 234678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE
Q psy8397 92 QCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI 170 (203)
Q Consensus 92 ~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl 170 (203)
.+++.|+++++ .|.|||++|||++ .+..+||||++|
T Consensus 423 ~i~~~l~~l~~~~g~tvi~vsHdl~-------------------------------------------~~~~~aDri~vl 459 (538)
T 3ozx_A 423 IVAKAIKRVTRERKAVTFIIDHDLS-------------------------------------------IHDYIADRIIVF 459 (538)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHH-------------------------------------------HHHHHCSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH-------------------------------------------HHHHhCCEEEEE
Confidence 99999999975 4777777777753 477899999999
Q ss_pred eC--CeEEeeCCcccch
Q psy8397 171 AE--GHCVYKGSSANTI 185 (203)
Q Consensus 171 ~~--G~i~~~g~~~~~~ 185 (203)
++ |.+...+++..+.
T Consensus 460 ~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 460 KGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EEETTTEEEECCCEEHH
T ss_pred eCCcceeccCCChHHHH
Confidence 86 5666777776654
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=9.2e-24 Score=197.78 Aligned_cols=92 Identities=24% Similarity=0.443 Sum_probs=82.1
Q ss_pred CHhHHHhH---HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 24 SVDDILDT---IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 24 ~~~~~~~~---~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
++.+++.. .+++.++++.+||....++++.+|||||||||+||+||+.+|++|||||||++||+.++..+++.|+++
T Consensus 125 ~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 204 (538)
T 1yqt_A 125 KVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204 (538)
T ss_dssp BHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 67665432 246889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEecCCC
Q psy8397 101 ARGGRTIVCTIHQPS 115 (203)
Q Consensus 101 ~~~g~tvi~~tH~~~ 115 (203)
.++|.|||++||+++
T Consensus 205 ~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 205 SEEGKSVLVVEHDLA 219 (538)
T ss_dssp HHTTCEEEEECSCHH
T ss_pred HhcCCEEEEEeCCHH
Confidence 877888888888753
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=1.6e-23 Score=198.86 Aligned_cols=92 Identities=24% Similarity=0.456 Sum_probs=82.6
Q ss_pred CHhHHHhH---HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 24 SVDDILDT---IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 24 ~~~~~~~~---~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
++.|++.. .++++++++.+||.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++
T Consensus 195 tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 195 KVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp BHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 77776532 246889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEecCCC
Q psy8397 101 ARGGRTIVCTIHQPS 115 (203)
Q Consensus 101 ~~~g~tvi~~tH~~~ 115 (203)
.++|.|||++||+++
T Consensus 275 ~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 275 ANEGKAVLVVEHDLA 289 (607)
T ss_dssp HHTTCEEEEECSCHH
T ss_pred HhcCCEEEEEecChH
Confidence 877788888888753
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.7e-23 Score=198.79 Aligned_cols=102 Identities=21% Similarity=0.355 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+++.++++.+||....++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 279 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999877888888888
Q ss_pred CCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEe
Q psy8397 113 QPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVY 177 (203)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~ 177 (203)
+++ .+..+||++++|++|..++
T Consensus 280 dl~-------------------------------------------~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 280 DLS-------------------------------------------VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp CHH-------------------------------------------HHHHHCSEEEEEESCTTTE
T ss_pred CHH-------------------------------------------HHHHhCCEEEEEeCCcccc
Confidence 764 4678899999998776443
No 53
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=4.5e-23 Score=203.52 Aligned_cols=119 Identities=29% Similarity=0.444 Sum_probs=101.8
Q ss_pred CCHhHHHhH------HHHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHH
Q psy8397 23 ISVDDILDT------IGLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQ 92 (203)
Q Consensus 23 ~~~~~~~~~------~~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~ 92 (203)
+|+.+.+.. ..++.++|+.+||.. ..++++.+|||||||||+|||+|+.+| ++|||||||+|||+.+++.
T Consensus 767 ~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~ 846 (916)
T 3pih_A 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRK 846 (916)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHH
T ss_pred CCHHHHHHHHhcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 566665432 356778999999975 468999999999999999999999876 7999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE--
Q psy8397 93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI-- 170 (203)
Q Consensus 93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl-- 170 (203)
+++.|++++++|.|||++||+++ .+ ..||+|++|
T Consensus 847 L~~lL~~L~~~G~TVIvI~HdL~-------------------------------------------~i-~~ADrIivLgp 882 (916)
T 3pih_A 847 LVEVLHRLVDRGNTVIVIEHNLD-------------------------------------------VI-KNADHIIDLGP 882 (916)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHH-------------------------------------------HH-TTCSEEEEEES
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-------------------------------------------HH-HhCCEEEEecC
Confidence 99999999877788888888753 23 459999999
Q ss_pred ----eCCeEEeeCCcccch
Q psy8397 171 ----AEGHCVYKGSSANTI 185 (203)
Q Consensus 171 ----~~G~i~~~g~~~~~~ 185 (203)
++|+|++.|+|+++.
T Consensus 883 ~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 883 EGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp SSGGGCCEEEEEESHHHHH
T ss_pred CCCCCCCEEEEEcCHHHHH
Confidence 899999999999876
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=2.5e-23 Score=206.32 Aligned_cols=121 Identities=25% Similarity=0.276 Sum_probs=106.3
Q ss_pred ccCCCCHhHHHhH-----HHHHHHHHHHcCCc-ccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q psy8397 19 YSHRISVDDILDT-----IGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92 (203)
Q Consensus 19 ~~~~~~~~~~~~~-----~~~v~~~L~~~~L~-~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~ 92 (203)
+...+|+.+++.. .+++.++++.+||. +..++++++||||||||++|||+|+.+|++|||||||+|||+.++..
T Consensus 507 ~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~ 586 (986)
T 2iw3_A 507 THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAW 586 (986)
T ss_dssp CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHH
T ss_pred cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH
Confidence 3456788887642 56789999999995 68899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeC
Q psy8397 93 CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAE 172 (203)
Q Consensus 93 i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~ 172 (203)
+++.|++ .|.|||++||+++ .+..+||++++|++
T Consensus 587 l~~~L~~---~g~tvIivSHdl~-------------------------------------------~l~~~adrii~L~~ 620 (986)
T 2iw3_A 587 LVNYLNT---CGITSITISHDSV-------------------------------------------FLDNVCEYIINYEG 620 (986)
T ss_dssp HHHHHHH---SCSEEEEECSCHH-------------------------------------------HHHHHCSEEEEEET
T ss_pred HHHHHHh---CCCEEEEEECCHH-------------------------------------------HHHHhCCEEEEEEC
Confidence 9999988 5889999999864 46789999999999
Q ss_pred CeEE-eeCCcccch
Q psy8397 173 GHCV-YKGSSANTI 185 (203)
Q Consensus 173 G~i~-~~g~~~~~~ 185 (203)
|+++ +.|+++++.
T Consensus 621 G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 621 LKLRKYKGNFTEFV 634 (986)
T ss_dssp TEEEEEESCHHHHH
T ss_pred CeeecCCCCHHHHH
Confidence 9996 689887764
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.88 E-value=3.7e-23 Score=193.94 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=80.5
Q ss_pred CHhHHHhH---HHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 24 SVDDILDT---IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 24 ~~~~~~~~---~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
++.+++.. +++++++++.+|+....++++.+|||||||||+||+||+.+|++|||||||++||+.++..+++.|+++
T Consensus 105 ~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l 184 (538)
T 3ozx_A 105 TVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184 (538)
T ss_dssp BHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 56654432 236788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEecCCC
Q psy8397 101 ARGGRTIVCTIHQPS 115 (203)
Q Consensus 101 ~~~g~tvi~~tH~~~ 115 (203)
.+ |.|||++||+++
T Consensus 185 ~~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 185 LK-NKYVIVVDHDLI 198 (538)
T ss_dssp CT-TSEEEEECSCHH
T ss_pred hC-CCEEEEEEeChH
Confidence 75 788888888864
No 56
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=1.9e-22 Score=199.36 Aligned_cols=109 Identities=27% Similarity=0.388 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
.++.++++.+||.. ..++++.+|||||||||+||++|+.+| ++|||||||+|||+.++..+++.|++++++|.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34578999999987 789999999999999999999999875 99999999999999999999999999987778888
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA 182 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~ 182 (203)
++||+++ .+ ..||++++| ++|++++.|+++
T Consensus 903 visHdl~-------------------------------------------~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 903 VIEHNLD-------------------------------------------VI-KTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp EECCCHH-------------------------------------------HH-TTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred EEcCCHH-------------------------------------------HH-HhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 8888753 23 579999999 789999999998
Q ss_pred cch
Q psy8397 183 NTI 185 (203)
Q Consensus 183 ~~~ 185 (203)
++.
T Consensus 939 el~ 941 (972)
T 2r6f_A 939 EVA 941 (972)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 57
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=1.4e-22 Score=198.46 Aligned_cols=109 Identities=28% Similarity=0.390 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDN---PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~---P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
+++.++++.+||.. ..++++.+|||||||||+||++|+.+ |++|||||||+|||+..+..+++.|++++++|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999987 46999999999999999999999996 799999999999999999999999999997788888
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA 182 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~ 182 (203)
++||+++ .+ ..||++++| ++|++++.|+++
T Consensus 788 visHdl~-------------------------------------------~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~ 823 (842)
T 2vf7_A 788 AVEHKMQ-------------------------------------------VV-AASDWVLDIGPGAGEDGGRLVAQGTPA 823 (842)
T ss_dssp EECCCHH-------------------------------------------HH-TTCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred EEcCCHH-------------------------------------------HH-HhCCEEEEECCCCCCCCCEEEEEcCHH
Confidence 8888753 35 689999999 799999999998
Q ss_pred cch
Q psy8397 183 NTI 185 (203)
Q Consensus 183 ~~~ 185 (203)
++.
T Consensus 824 el~ 826 (842)
T 2vf7_A 824 EVA 826 (842)
T ss_dssp HHT
T ss_pred HHH
Confidence 765
No 58
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=2.7e-22 Score=197.92 Aligned_cols=108 Identities=29% Similarity=0.444 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 34 LVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 34 ~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
...+.|..+||... .++++.+|||||||||+||++|+.+|+ +|||||||+|||+..+..+++.|++++++|.|||++
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 44567888999864 699999999999999999999999887 999999999999999999999999998667777777
Q ss_pred ecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcccc
Q psy8397 111 IHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSANT 184 (203)
Q Consensus 111 tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~~~ 184 (203)
||+++ .+ ..||+|++| ++|++++.|+++++
T Consensus 523 tHd~~-------------------------------------------~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~ 558 (916)
T 3pih_A 523 EHDEE-------------------------------------------VI-RNADHIIDIGPGGGTNGGRVVFQGTVDEL 558 (916)
T ss_dssp CCCHH-------------------------------------------HH-HTCSEEEEEESSSGGGCSEEEEEECHHHH
T ss_pred eCCHH-------------------------------------------HH-HhCCEEEEEcCCcccCCCEEEEeechhhh
Confidence 77752 23 459999999 89999999999876
Q ss_pred h
Q psy8397 185 I 185 (203)
Q Consensus 185 ~ 185 (203)
.
T Consensus 559 ~ 559 (916)
T 3pih_A 559 L 559 (916)
T ss_dssp H
T ss_pred h
Confidence 4
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.87 E-value=3.2e-22 Score=203.00 Aligned_cols=133 Identities=26% Similarity=0.320 Sum_probs=103.8
Q ss_pred CceeEEEeeecccccCCCCHhHHHh--------HHHHHHHHHHHcCCcccc-------ccc----CCCCCHHHHHHHHHH
Q psy8397 6 HGTIWCWQIISAQYSHRISVDDILD--------TIGLVDDILDTIGLVLSK-------HTL----CGRLSGGQKKRLSIA 66 (203)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~L~~~~L~~~~-------~~~----v~~LSgGqrqrl~iA 66 (203)
....+.+|... + ...|+.|++. ..+.+.+.++..++.+.. ++. ..+||||||||++||
T Consensus 1107 ~~i~~v~Q~~~--l-~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1107 AQLGIVSQEPI--L-FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp TSCEEEESSCC--C-CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred hceEEECCCCc--c-ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 45677777542 3 3468888762 234556666666554332 333 357999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (203)
|||+.+|++|+|||||+|||+.+.+.+.+.|+++ .+|+|+|++||++++
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~------------------------------ 1232 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST------------------------------ 1232 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG------------------------------
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH------------------------------
Confidence 9999999999999999999999999999999885 357888888888753
Q ss_pred ceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 147 ~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
+ ..||+|++|++|++++.|+++++..
T Consensus 1233 -------------i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1233 -------------I-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp -------------G-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred -------------H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 3 4599999999999999999998763
No 60
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=4.7e-22 Score=197.04 Aligned_cols=109 Identities=26% Similarity=0.393 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIALELIDNP---PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~aL~~~P---~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
.++.++++.+||.. ..++++.+|||||||||+||++|+.+| ++|||||||+|||+.++..+++.|++++++|.|||
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34568899999987 789999999999999999999999875 99999999999999999999999999987777888
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA 182 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~ 182 (203)
++||+++ .+ ..||++++| ++|++++.|+++
T Consensus 921 visHdl~-------------------------------------------~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 921 VIEHNLD-------------------------------------------VI-KTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp EECCCHH-------------------------------------------HH-TTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred EEcCCHH-------------------------------------------HH-HhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 8887753 23 579999999 689999999998
Q ss_pred cch
Q psy8397 183 NTI 185 (203)
Q Consensus 183 ~~~ 185 (203)
++.
T Consensus 957 el~ 959 (993)
T 2ygr_A 957 DVA 959 (993)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=6.2e-22 Score=195.73 Aligned_cols=109 Identities=27% Similarity=0.429 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 32 IGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
.+++ +.|..+||... .++++.+|||||+|||.||++|..+| ++|+|||||+|||+.....+++.|++|+..|.|||
T Consensus 482 ~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVI 560 (972)
T 2r6f_A 482 RDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLI 560 (972)
T ss_dssp HHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred HHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4455 45899999865 79999999999999999999999985 99999999999999999999999999987788888
Q ss_pred EEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCcc
Q psy8397 109 CTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSSA 182 (203)
Q Consensus 109 ~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~~ 182 (203)
+++|+++ ++ ..||+|++| ++|++++.|+++
T Consensus 561 vVeHdl~-------------------------------------------~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~ 596 (972)
T 2r6f_A 561 VVEHDED-------------------------------------------TM-LAADYLIDIGPGAGIHGGEVVAAGTPE 596 (972)
T ss_dssp EECCCHH-------------------------------------------HH-HSCSEEEEECSSSGGGCCSEEEEECTT
T ss_pred EEecCHH-------------------------------------------HH-HhCCEEEEeCCCccCCCCEEEEecCHH
Confidence 8888753 23 479999999 799999999998
Q ss_pred cch
Q psy8397 183 NTI 185 (203)
Q Consensus 183 ~~~ 185 (203)
++.
T Consensus 597 e~~ 599 (972)
T 2r6f_A 597 EVM 599 (972)
T ss_dssp TTT
T ss_pred HHH
Confidence 875
No 62
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.86 E-value=5.7e-22 Score=157.49 Aligned_cols=67 Identities=25% Similarity=0.389 Sum_probs=60.5
Q ss_pred ccccCCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 48 KHTLCGRLSGGQKKRLSIA------LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 48 ~~~~v~~LSgGqrqrl~iA------~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.++++++||||||||++|| ++|+.+|+++||||||+|||+.++..+.+.++++.++|.|||++||++
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 5678999999999999886 899999999999999999999999999999999876677777777774
No 63
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=7.7e-22 Score=176.35 Aligned_cols=85 Identities=28% Similarity=0.402 Sum_probs=75.7
Q ss_pred cccCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh
Q psy8397 49 HTLCGRLSGGQKKRLSIALELI------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~ 122 (203)
++++.+||||||||++||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|.|||++||+++
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~------- 346 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE------- 346 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-------
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-------
Confidence 5788999999999999999999 799999999999999999999999999999866777777777752
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEe
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVY 177 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~ 177 (203)
....||++++|++|+++.
T Consensus 347 -------------------------------------~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 347 -------------------------------------FSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp -------------------------------------HHTTCSCEEEEETTEEC-
T ss_pred -------------------------------------HHHhCCEEEEEECCEEEe
Confidence 356799999999999875
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.86 E-value=1.2e-21 Score=194.20 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q psy8397 31 TIGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~--P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv 107 (203)
+.+++ +.|..+||... .++++.+|||||+|||.||++|..+ |++|||||||+|||+.....+++.|++|++.|.||
T Consensus 498 i~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 576 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL 576 (993)
T ss_dssp HHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 34555 45889999865 7999999999999999999999999 58999999999999999999999999998778888
Q ss_pred EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCc
Q psy8397 108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSS 181 (203)
Q Consensus 108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~ 181 (203)
|+++|+++ . ...||+|++| ++|++++.|++
T Consensus 577 IvVeHdl~-------------------------------------------~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~ 612 (993)
T 2ygr_A 577 IVVEHDED-------------------------------------------T-IEHADWIVDIGPGAGEHGGRIVHSGPY 612 (993)
T ss_dssp EEECCCHH-------------------------------------------H-HHTCSEEEEECSSSGGGCCSCCEEECH
T ss_pred EEECCCHH-------------------------------------------H-HHhCCEEEEecCccccCCCEEEEeeCH
Confidence 88888753 2 3479999999 79999999999
Q ss_pred ccch
Q psy8397 182 ANTI 185 (203)
Q Consensus 182 ~~~~ 185 (203)
+++.
T Consensus 613 ~e~~ 616 (993)
T 2ygr_A 613 DELL 616 (993)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8775
No 65
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.86 E-value=6.2e-22 Score=201.37 Aligned_cols=131 Identities=27% Similarity=0.386 Sum_probs=102.6
Q ss_pred eeEEEeeecccccCCCCHhHHHh--------HHHHHHHHHHHcCCcc-------cccccCC----CCCHHHHHHHHHHHH
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD--------TIGLVDDILDTIGLVL-------SKHTLCG----RLSGGQKKRLSIALE 68 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~L~~~~L~~-------~~~~~v~----~LSgGqrqrl~iA~a 68 (203)
..+.+|.+. + ..-|+.||+. ..+.+.++++..++.+ -.|+.++ +||||||||++||||
T Consensus 1155 i~~V~Qdp~--L-F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1155 IAIVSQEPT--L-FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp EEEECSSCC--C-CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCE--e-eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 445555322 2 2347777631 2456777777776643 3455554 699999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCce
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 148 (203)
|+.+|+||+||||||+||+.+.+.+.+.|+++. +|+|+|+++|.++.
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-------------------------------- 1278 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-------------------------------- 1278 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--------------------------------
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--------------------------------
Confidence 999999999999999999999999999988754 47888888888753
Q ss_pred EEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchh
Q psy8397 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIP 186 (203)
Q Consensus 149 vi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~ 186 (203)
...||+|+||++|+|++.|++++++.
T Consensus 1279 ------------i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1279 ------------VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp ------------TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred ------------HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 35699999999999999999999874
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.85 E-value=2.2e-21 Score=190.06 Aligned_cols=111 Identities=27% Similarity=0.425 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q psy8397 31 TIGLVDDILDTIGLVLS-KHTLCGRLSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~-~~~~v~~LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv 107 (203)
+.++++ .+..+||... .++++.+|||||||||.||++|+.+| ++|+|||||+|||+..++.+++.|++|+..|.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 445565 6889999865 79999999999999999999999999 5999999999999999999999999998777777
Q ss_pred EEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE------eCCeEEeeCCc
Q psy8397 108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI------AEGHCVYKGSS 181 (203)
Q Consensus 108 i~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl------~~G~i~~~g~~ 181 (203)
|+++|+++ ....||+|++| .+|++++.|++
T Consensus 435 IvVeHdl~--------------------------------------------~l~~aD~ii~lgpgaG~~~G~iv~~g~~ 470 (842)
T 2vf7_A 435 FVVEHDLD--------------------------------------------VIRRADWLVDVGPEAGEKGGEILYSGPP 470 (842)
T ss_dssp EEECCCHH--------------------------------------------HHTTCSEEEEECSSSGGGCCSEEEEECG
T ss_pred EEEcCCHH--------------------------------------------HHHhCCEEEEeCCCcccCCCEEEEecCH
Confidence 77777752 34579999999 79999999999
Q ss_pred ccchh
Q psy8397 182 ANTIP 186 (203)
Q Consensus 182 ~~~~~ 186 (203)
+++..
T Consensus 471 ~~~~~ 475 (842)
T 2vf7_A 471 EGLKH 475 (842)
T ss_dssp GGGGG
T ss_pred HHHHh
Confidence 88753
No 67
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=1.6e-21 Score=197.84 Aligned_cols=130 Identities=25% Similarity=0.306 Sum_probs=100.1
Q ss_pred eeEEEeeecccccCCCCHhHHHhH------HHHHHHHHHHcCCc-----------ccccccCCCCCHHHHHHHHHHHHHh
Q psy8397 8 TIWCWQIISAQYSHRISVDDILDT------IGLVDDILDTIGLV-----------LSKHTLCGRLSGGQKKRLSIALELI 70 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~L~~~~L~-----------~~~~~~v~~LSgGqrqrl~iA~aL~ 70 (203)
..+++|.. .++. -|+.|++.. .+++.+.++..++. .....+..+||||||||++|||||+
T Consensus 466 i~~v~Q~~--~l~~-~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEP--VLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSC--CCCS-SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCC--ccCC-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 56677653 2333 488887643 33455555544432 2234455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++|||||||++||+.+.+.+.+.++.+. +|+|+|++||+++
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~----------------------------------- 586 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS----------------------------------- 586 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-----------------------------------
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-----------------------------------
Confidence 9999999999999999999999999998764 4778888888753
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
.+ ..||+|++|++|++++.|+++++.
T Consensus 587 --------~i-~~~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 587 --------TV-RNADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp --------HH-TTCSEEEECSSSCCCCEECHHHHH
T ss_pred --------HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 24 449999999999999999998875
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=6.8e-22 Score=196.08 Aligned_cols=103 Identities=24% Similarity=0.375 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCcc-c-ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 32 IGLVDDILDTIGLVL-S-KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~-~-~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
.++++++++.+||.. . .++++++|||||||||+|||+|+.+|++|||||||+|||+.+...+++.|+++ |.|||+
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIi 953 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVII 953 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEE
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEE
Confidence 356888999999975 3 68899999999999999999999999999999999999999999988887654 457777
Q ss_pred EecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 110 TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 110 ~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
+||+++ .+..+||++++|.+|+++..|+
T Consensus 954 ISHD~e-------------------------------------------~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 954 ITHSAE-------------------------------------------FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp ECSCHH-------------------------------------------HHTTTCCEEECCBTTBCCC---
T ss_pred EECCHH-------------------------------------------HHHHhCCEEEEEECCEEEEeCC
Confidence 777753 4678999999999999988774
No 69
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.85 E-value=3.4e-21 Score=195.98 Aligned_cols=130 Identities=27% Similarity=0.311 Sum_probs=102.5
Q ss_pred eeEEEeeecccccCCCCHhHHHh------HHHHHHHHHHHcCCccc-------ccccC----CCCCHHHHHHHHHHHHHh
Q psy8397 8 TIWCWQIISAQYSHRISVDDILD------TIGLVDDILDTIGLVLS-------KHTLC----GRLSGGQKKRLSIALELI 70 (203)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~L~~~~L~~~-------~~~~v----~~LSgGqrqrl~iA~aL~ 70 (203)
..+++|.. +-..-|+.|++. ..+++.++++..++.+. .++.+ .+||||||||++||||++
T Consensus 494 i~~v~Q~~---~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 494 VAVVSQEP---ALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp EEEECSSC---CCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred ccccCCcc---eeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 45666532 224457777763 24567777776655332 34444 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEE
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIV 150 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi 150 (203)
.+|++||||||||+||+.+.+.+.+.|.++. +|+|+|++||+++.
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~---------------------------------- 615 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST---------------------------------- 615 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT----------------------------------
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHH----------------------------------
Confidence 9999999999999999999999999998875 47888888888752
Q ss_pred EeecCchhHHHhhcCEEEEEeCCeEEeeCCcccch
Q psy8397 151 CTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI 185 (203)
Q Consensus 151 ~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~ 185 (203)
...||+|++|++|+|++.|+.+++.
T Consensus 616 ----------i~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 616 ----------IRNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp ----------TTTCSEEEEEETTEEEEEECHHHHH
T ss_pred ----------HHhCCEEEEeeCCeeeccCCHHHHH
Confidence 4679999999999999999999875
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.81 E-value=1.5e-19 Score=161.29 Aligned_cols=80 Identities=24% Similarity=0.391 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397 55 LSGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST 132 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~ 132 (203)
||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|+++. +|.|||+|||+++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~----------------- 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ----------------- 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH-----------------
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH-----------------
Confidence 5999999999999999999 9999999999999999999999999997 5788888888752
Q ss_pred hHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEE----eCCeEEeeC
Q psy8397 133 NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI----AEGHCVYKG 179 (203)
Q Consensus 133 ~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl----~~G~i~~~g 179 (203)
+...||++++| .+|+++...
T Consensus 358 ---------------------------~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 358 ---------------------------IAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp ---------------------------HHTTCSEEEEEEEEEETTEEEEEE
T ss_pred ---------------------------HHhhcCeEEEEEEeccCCceEEEE
Confidence 34679999999 999987653
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=3.8e-18 Score=149.21 Aligned_cols=67 Identities=24% Similarity=0.354 Sum_probs=60.4
Q ss_pred cccccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 47 SKHTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 47 ~~~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
..+.++..||||||||++||++|+ .+|++|||||||++||+..+..+++.|+++. +|.|+|++||++
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~ 282 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK 282 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH
Confidence 356788999999999999999997 6889999999999999999999999999984 478888888885
No 72
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=1.4e-18 Score=153.06 Aligned_cols=68 Identities=25% Similarity=0.407 Sum_probs=59.9
Q ss_pred cccccCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 47 SKHTLCGRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 47 ~~~~~v~~LSgGqrq------rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
..++++..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~ 314 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 314 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH
Confidence 356788999999999 67788888899999999999999999999999999999876677777777773
No 73
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.74 E-value=3.1e-18 Score=158.79 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=58.5
Q ss_pred ccCCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 50 TLCGRL-SGGQKKRLSIALELIDNP--PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 50 ~~v~~L-SgGqrqrl~iA~aL~~~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
++++.| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||++||++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~ 458 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA 458 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 567788 999999999999999999 99999999999999999999999999986 77777777774
No 74
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.72 E-value=2.8e-17 Score=133.51 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=55.2
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 48 KHTLCGRLSGGQKKRLSIALELID----NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 48 ~~~~v~~LSgGqrqrl~iA~aL~~----~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
..+++..||||||||++||++|+. +|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~ 126 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLR 126 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSC
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEec
Confidence 455678899999999999999974 4699999999999999999999999998863 3456666665
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.70 E-value=1.5e-17 Score=149.12 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=75.8
Q ss_pred cccCC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchh
Q psy8397 49 HTLCG-RLSGGQKKRLSIALELI---------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATI 118 (203)
Q Consensus 49 ~~~v~-~LSgGqrqrl~iA~aL~---------~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~ 118 (203)
+++++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.++++. .|+|++||. +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~--- 331 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A--- 331 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C---
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c---
Confidence 56677 79999999999999999 8999999999999999999999999998764 567777762 1
Q ss_pred hhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 119 FEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
. .+|+++++.+|+++..|+++++
T Consensus 332 ----------------------------------------~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 332 ----------------------------------------P---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ----------------------------------------T---TCSEEEEEETTEEEECCCTTTS
T ss_pred ----------------------------------------c---cCCEEEEEECCEEEecCCHHHH
Confidence 2 7999999999999999999876
No 76
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.9e-18 Score=155.58 Aligned_cols=107 Identities=12% Similarity=0.144 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCCe
Q psy8397 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALE--LIDNPPI----MFLDE-PTTGLDSNSTNQCVAMLKALARGGRT 106 (203)
Q Consensus 34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~a--L~~~P~v----LlLDE-Pt~gLD~~~~~~i~~~l~~l~~~g~t 106 (203)
++.++++.+|+.+..+ +.+|||||||||+||++ |+.+|++ ||||| ||++||+. ...+.+.++++ |.|
T Consensus 217 ~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~t 290 (460)
T 2npi_A 217 NKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVN 290 (460)
T ss_dssp CBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCC
T ss_pred HHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCC
Confidence 4556788889887766 88999999999999999 9999999 99999 99999998 54455444432 678
Q ss_pred EEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCE-----EEEEe-CCeEEeeCC
Q psy8397 107 IVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH-----LYVIA-EGHCVYKGS 180 (203)
Q Consensus 107 vi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~-----v~vl~-~G~i~~~g~ 180 (203)
+|++||+.+.++. ...+..+||+ +++|+ +|+++ .|+
T Consensus 291 viiVth~~~~~l~-------------------------------------~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~ 332 (460)
T 2npi_A 291 IMLVLCSETDPLW-------------------------------------EKVKKTFGPELGNNNIFFIPKLDGVS-AVD 332 (460)
T ss_dssp EEEEECCSSCTHH-------------------------------------HHHHHHHHHHHCGGGEEEECCCTTCC-CCC
T ss_pred EEEEEccCchhhh-------------------------------------HHHHHHhcccccCCEEEEEeCCCcEE-ECC
Confidence 8888888641100 0035678999 99999 99999 898
Q ss_pred cccc
Q psy8397 181 SANT 184 (203)
Q Consensus 181 ~~~~ 184 (203)
++++
T Consensus 333 ~~~~ 336 (460)
T 2npi_A 333 DVYK 336 (460)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.64 E-value=2.6e-16 Score=127.57 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=57.1
Q ss_pred cccccCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 47 SKHTLCGRLSGGQKKRLSIALE-----LIDNPPIMFLDE--PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 47 ~~~~~v~~LSgGqrqrl~iA~a-----L~~~P~vLlLDE--Pt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
..++++.+||||||||++||++ ++.+|++++||| ||++||+..++.+.+.+++ .+.|+|++||+
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~ 139 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPI 139 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCS
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEcc
Confidence 5678888999999999999996 999999999999 9999999999998888765 46778888874
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.63 E-value=5.9e-17 Score=129.36 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=63.8
Q ss_pred HcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCC
Q psy8397 41 TIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN----------------STNQCVAMLKALARGG 104 (203)
Q Consensus 41 ~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~----------------~~~~i~~~l~~l~~~g 104 (203)
..|.....+ .....|||||||++||++++.+|++|+|||||++||+. .+..+++.+++++++|
T Consensus 71 ~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g 149 (171)
T 4gp7_A 71 QLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG 149 (171)
T ss_dssp HTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT
T ss_pred hCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC
Confidence 345543333 33456999999999999999999999999999999999 6688999999988779
Q ss_pred CeEEEEecCCCc
Q psy8397 105 RTIVCTIHQPSA 116 (203)
Q Consensus 105 ~tvi~~tH~~~~ 116 (203)
.|+|++||++++
T Consensus 150 ~tvi~vtH~~~~ 161 (171)
T 4gp7_A 150 FRYVYILNSPEE 161 (171)
T ss_dssp CSEEEEECSHHH
T ss_pred CcEEEEeCCHHH
Confidence 999999999865
No 79
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.63 E-value=1.4e-15 Score=135.34 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=63.9
Q ss_pred HHHHHHHHHcCCccc------------cc----ccCCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHH
Q psy8397 33 GLVDDILDTIGLVLS------------KH----TLCGRLSGGQKKRL------SIALELIDN-PPIMFLDEPTTGLDSNS 89 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~------------~~----~~v~~LSgGqrqrl------~iA~aL~~~-P~vLlLDEPt~gLD~~~ 89 (203)
+.+.+.++.+++... .+ .++..|||||+||+ ++|++|+.+ |++|||||||+|||+..
T Consensus 243 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~ 322 (371)
T 3auy_A 243 KYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322 (371)
T ss_dssp HHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred HHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence 345667777766441 11 56778999999988 567889999 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 90 TNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 90 ~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+..+.+.|+++. ++.+||+|||++
T Consensus 323 ~~~l~~~l~~~~-~~~~vi~~th~~ 346 (371)
T 3auy_A 323 RAKLAEIFRKVK-SIPQMIIITHHR 346 (371)
T ss_dssp HHHHHHHHHHCC-SCSEEEEEESCG
T ss_pred HHHHHHHHHHhc-cCCeEEEEEChH
Confidence 999999999864 335677777764
No 80
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.61 E-value=1.8e-15 Score=136.76 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=57.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 49 HTLCGRLSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~----~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.+++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++..+|.++|++||+
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~ 396 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 396 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 3556679999999999999999 5899999999999999999999999999987556677777776
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.49 E-value=1.9e-14 Score=133.47 Aligned_cols=73 Identities=8% Similarity=-0.087 Sum_probs=68.2
Q ss_pred HcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 41 TIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN-----STNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 41 ~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~-----~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.+|+....+.++.+|||||+||+.+|+++..+|++|++| ||+|||+. .+..++++++.+++.|.|||++||++
T Consensus 340 ~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 340 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 466777788889999999999999999999999999999 99999999 99999999999998899999999997
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.43 E-value=2.9e-15 Score=124.43 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 58 GQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 58 Gqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
|||||++|||||+.+|++|||||||+| ++..+++.|+++ ++|+||| +||++++
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~ 160 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQ 160 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC---
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHH
Confidence 999999999999999999999999999 889999999998 6799999 9999864
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.31 E-value=1e-13 Score=126.35 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGG--QKKRLSIALELID----------NPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgG--qrqrl~iA~aL~~----------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
.++.++++.+++.+..... . |||| |+||+.||++|++ +|++++|||||+|||+..+.++++.++++
T Consensus 135 ~~~~~~L~~~~L~~~~~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 4578899999987654333 3 9999 9999999999999 99999999999999999999999999998
Q ss_pred H-----hCC----CeEEEEecCCCc-hhhhhhhccc
Q psy8397 101 A-----RGG----RTIVCTIHQPSA-TIFEMVDHLG 126 (203)
Q Consensus 101 ~-----~~g----~tvi~~tH~~~~-~~~~~~~~~~ 126 (203)
. +.| .+|+++||++++ -+.++|++|.
T Consensus 213 ~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 213 CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 4 333 678899999875 4677777773
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.30 E-value=2.2e-12 Score=127.73 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=53.4
Q ss_pred ccCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCeEEEEecCCC
Q psy8397 50 TLCGRLSGGQKKRLSIALEL--IDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL--~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
.....+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ +.+++.+.++ |.|+|++||+.+
T Consensus 717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e 786 (934)
T 3thx_A 717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE 786 (934)
T ss_dssp ------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG
T ss_pred hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH
Confidence 34457899999999999988 999999999999999999999888 7788888864 889999999853
No 85
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.16 E-value=4.4e-11 Score=118.31 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=59.3
Q ss_pred HHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCeEEEEecCCCc
Q psy8397 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALAR-GGRTIVCTIHQPSA 116 (203)
Q Consensus 39 L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~-~~l~~l~~-~g~tvi~~tH~~~~ 116 (203)
+..+|+.+......+.+|+||+|++.++++ +.+|+++||||||+|||+.....+. .+++.+.+ .|.|+|++||+++.
T Consensus 720 ~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 720 FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 344555556667778899999999999998 8999999999999999999999987 78888865 59999999999753
No 86
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.15 E-value=1.1e-10 Score=99.59 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=50.3
Q ss_pred cCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 51 LCGRLSGGQ-KKRLSIALELIDNPPIMFLDEPTT---G---LDS-NSTNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 51 ~v~~LSgGq-rqrl~iA~aL~~~P~vLlLDEPt~---g---LD~-~~~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
.+..+|.++ +|++. |+++.++|+++|+||||+ + +|. .....+++.|++++++ |+|||++||+.
T Consensus 126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 446789998 67776 999999999999999999 5 555 6778899999999765 99999999995
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.14 E-value=3.9e-11 Score=119.89 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=56.2
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 42 IGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST-NQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 42 ~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~-~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
+|+.+......+++|+|+++ +++|++++.+|+++|||||++|+|+... ..++.+++.+.++ |.|+|++||+++
T Consensus 839 ig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 839 LGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp CC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred cCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 45555455556778888876 9999999999999999999999999985 5578999999876 899999999965
No 88
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.09 E-value=1.7e-10 Score=98.03 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=64.9
Q ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-CCCeEE
Q psy8397 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT--GLDSNST---NQCVAMLKALAR-GGRTIV 108 (203)
Q Consensus 35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~--gLD~~~~---~~i~~~l~~l~~-~g~tvi 108 (203)
+.++++.+++.+..++++..||+|+++++ ++++.+|+++++||||+ ++|+... ..+++.|+.+.+ .|+|||
T Consensus 99 ~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 34567888888888889999999998765 68888999999999999 9998554 788888888864 599999
Q ss_pred EEecCCC
Q psy8397 109 CTIHQPS 115 (203)
Q Consensus 109 ~~tH~~~ 115 (203)
+++|+..
T Consensus 176 ~i~H~~~ 182 (279)
T 1nlf_A 176 FLHHASK 182 (279)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999975
No 89
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.08 E-value=8.6e-13 Score=107.62 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q psy8397 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL----DSNSTNQCVAMLKALAR-GGRTIVCTIHQ 113 (203)
Q Consensus 39 L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gL----D~~~~~~i~~~l~~l~~-~g~tvi~~tH~ 113 (203)
++.+|+...+++++..|| +|+.+|++++|||||+|+ |+..++++++.++++.+ .|.|+|++||+
T Consensus 119 l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd 187 (207)
T 1znw_A 119 VDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR 187 (207)
T ss_dssp CCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS
T ss_pred eCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC
Confidence 566677777788888888 999999999999999998 78899999999999975 49999999999
Q ss_pred CCchhhhhhhccccC
Q psy8397 114 PSATIFEMVDHLGLD 128 (203)
Q Consensus 114 ~~~~~~~~~~~~~~~ 128 (203)
+++ +.++|+++.++
T Consensus 188 l~~-~~~~~d~i~~l 201 (207)
T 1znw_A 188 LES-ACAELVSLLVG 201 (207)
T ss_dssp HHH-HHHHHHHHHC-
T ss_pred HHH-HHHHHHHHHHh
Confidence 875 67888888664
No 90
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.98 E-value=4.6e-10 Score=98.87 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397 57 GGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131 (203)
Q Consensus 57 gGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~ 131 (203)
|||+||++||+||..+|++|+|||||+ .++++.|+.+..++.|+|+|+|.++ ..+.|+|+.....+
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g 290 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSS 290 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcC
Confidence 899999999999999999999999998 2467778887755568999999987 56788888764443
No 91
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.96 E-value=1.4e-09 Score=87.68 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCCeEEEEecCC
Q psy8397 54 RLSGGQKKRLSIALELIDNPP--IMFLDEPTTGL--DSNSTNQCVAMLKALAR-GGRTIVCTIHQP 114 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gL--D~~~~~~i~~~l~~l~~-~g~tvi~~tH~~ 114 (203)
..|.++.++...+.+...+|+ ++++||||+++ |+..+..+++.|+++++ .|.|||+++|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 459999988888888888999 99999999877 99999999999999865 489999999986
No 92
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.93 E-value=5.6e-12 Score=110.70 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 34 ~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.+.+.++.+ |....+ ...|||||||| ||||+.+|+||| |++||+.+...+.. .||+
T Consensus 183 ~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~ 238 (305)
T 2v9p_A 183 ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSR 238 (305)
T ss_dssp HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTT
T ss_pred HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCC
Confidence 455666664 444444 77999999999 999999999999 99999988887752 1666
Q ss_pred CCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccchhHHH
Q psy8397 114 PSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQ 189 (203)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~~~~~~ 189 (203)
++ ....||+| +|++|++++.|+++++...+.
T Consensus 239 ~~--------------------------------------------~~~~aD~i-vl~~G~iv~~g~~~el~~~y~ 269 (305)
T 2v9p_A 239 VQ--------------------------------------------TFRFEQPC-TDESGEQPFNITDADWKSFFV 269 (305)
T ss_dssp EE--------------------------------------------EEECCCCC-CCC---CCCCCCHHHHHHHHH
T ss_pred HH--------------------------------------------HHHhCCEE-EEeCCEEEEeCCHHHHHHHHH
Confidence 43 24689999 999999999999988844443
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.91 E-value=1.3e-09 Score=89.35 Aligned_cols=61 Identities=13% Similarity=0.025 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLD-----SNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 56 SgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD-----~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
+.++......+..-..+|++++|||||++|| +..++.+.++++.+++.|+|||++||++.+
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4455444444445568999999999999997 667777999999998789999999999764
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.87 E-value=1.9e-10 Score=106.61 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=46.1
Q ss_pred HHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 62 RLSIALELI-DNPPIMFLDEPTT-----GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 62 rl~iA~aL~-~~P~vLlLDEPt~-----gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
.-.+..+|. .+|++++|||||+ +||+..++.++++++.+++.|+|||++||++++
T Consensus 127 ~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 127 IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp HHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred HHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 344455553 6799999999997 469999999999999998889999999999864
No 95
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.83 E-value=2.6e-10 Score=99.52 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=56.0
Q ss_pred HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q psy8397 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQ 113 (203)
Q Consensus 38 ~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~ 113 (203)
+++.+|+.+..++++.+|| |||++||++++.+|+ +|+|| ||+|||+..+ ++++.+ .|.|+|++||.
T Consensus 188 lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 188 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKL 256 (302)
T ss_dssp EECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECC
T ss_pred HHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCC
Confidence 4566788777788889999 999999999999999 99999 9999999755 345553 58999999994
No 96
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.80 E-value=1.7e-09 Score=105.67 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCeEEEEecCCC
Q psy8397 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
.+.+|+||++ ++.+...+.+|+++|||||++|+|+.....+ +.+++.+.++ |.|+|++||+++
T Consensus 667 ~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e 731 (800)
T 1wb9_A 667 RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 731 (800)
T ss_dssp ---CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH
Confidence 4467888765 4444556899999999999999999888775 7889999874 999999999975
No 97
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.78 E-value=3.9e-10 Score=100.96 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=55.6
Q ss_pred HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q psy8397 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQ 113 (203)
Q Consensus 38 ~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~--vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~ 113 (203)
+++.+|+.+..++++.+|| |||++|||+++.+|+ +|+|| ||+|||+..+. +.+.+ .|.|+|++||.
T Consensus 245 lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 245 LCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp EEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred HHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 4566777777788888999 999999999999999 99999 99999998653 44554 48999999994
No 98
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.76 E-value=1.4e-10 Score=103.12 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=65.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----eEEEEecCCCchhhhhh
Q psy8397 50 TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR--GGR-----TIVCTIHQPSATIFEMV 122 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~--~g~-----tvi~~tH~~~~~~~~~~ 122 (203)
..+.+||+|| ||+++| +.+|++ |+||||..+..++++++++.+ +|. ||+++|||++
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~------- 229 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN------- 229 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-------
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-------
Confidence 4678899999 899999 688877 999999999999999999874 365 6666666653
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
..+||+++++.+|+++.+|+++++
T Consensus 230 --------------------------------------~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 --------------------------------------DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --------------------------------------CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --------------------------------------ChhhhheEEeeCcEEEEeCCHHHc
Confidence 356888899999999998887764
No 99
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.69 E-value=3.8e-08 Score=79.05 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=49.6
Q ss_pred cCCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 51 LCGRLSGGQ--KKRLSIALELIDN-PPIMFLDEPTTGLDSNS--------TNQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 51 ~v~~LSgGq--rqrl~iA~aL~~~-P~vLlLDEPt~gLD~~~--------~~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
.+..+|+++ ++++..+++++.+ |+++++||||+++|+.. ...+++.|++++++ |.|||+++|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 81 ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 344566664 5688888899986 99999999999999743 24455667777655 899999999864
No 100
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.67 E-value=8.4e-10 Score=94.68 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=53.2
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 45 VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 45 ~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
....+..+.+||||||||+++|||++. ++|||||+.|||+.. .++++.+.+. .+||++.|-.+
T Consensus 89 ~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 89 EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGG
T ss_pred HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccc
Confidence 455677888999999999999999886 999999999999987 5566777666 89999988754
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.66 E-value=3.1e-08 Score=80.01 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=45.0
Q ss_pred CCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhC-CCeEEEEec
Q psy8397 54 RLSGGQK-KRLSIALELID-------NPPIMFLDEPTTGLDSNS------------TNQCVAMLKALARG-GRTIVCTIH 112 (203)
Q Consensus 54 ~LSgGqr-qrl~iA~aL~~-------~P~vLlLDEPt~gLD~~~------------~~~i~~~l~~l~~~-g~tvi~~tH 112 (203)
..+++++ +.+..+.+++. +|++++|||||+++|+.. ...+++.|+++.++ |.|||++||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH 178 (231)
T 4a74_A 99 AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 178 (231)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEee
Confidence 3455554 34666666665 999999999999999841 23677777777654 899999999
Q ss_pred CCC
Q psy8397 113 QPS 115 (203)
Q Consensus 113 ~~~ 115 (203)
...
T Consensus 179 ~~~ 181 (231)
T 4a74_A 179 VQA 181 (231)
T ss_dssp CC-
T ss_pred ccc
Confidence 754
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.65 E-value=1.7e-08 Score=98.28 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 53 GRLSGGQKKRLSIALEL--IDNPPIMFLDEP---TTGLDSNST-NQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL--~~~P~vLlLDEP---t~gLD~~~~-~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
..+|+|+++++.+|+++ +.+|+++||||| |++||+.+. ..+++.|.+ .|.|+|++||+.+
T Consensus 634 ~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 634 GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp -CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 35899999999999999 999999999999 999999876 467777665 5899999999964
No 103
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.65 E-value=3.8e-10 Score=103.28 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=62.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----eEEEEecCCCchhhhhh
Q psy8397 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR---G-GR-----TIVCTIHQPSATIFEMV 122 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~---~-g~-----tvi~~tH~~~~~~~~~~ 122 (203)
+..||+|| ||++|| +.+|++ |+|||+..+..+.+.+.++.+ + |. ||+++||+++
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~------- 318 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ------- 318 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-------
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-------
Confidence 56799999 999999 889988 999999999999999998865 2 53 6666666653
Q ss_pred hccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 123 DHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
..+||+++++.+|+++.+|+++++
T Consensus 319 --------------------------------------~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 319 --------------------------------------DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp --------------------------------------CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred --------------------------------------chhhceEEEEeCcEEEEeCCHHHc
Confidence 356788888888888888776654
No 104
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.50 E-value=8.6e-08 Score=76.41 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCccc-ccccCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q psy8397 34 LVDDILDTIGLVLS-KHTLCGRLSGGQKKR-LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR 105 (203)
Q Consensus 34 ~v~~~L~~~~L~~~-~~~~v~~LSgGqrqr-l~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~ 105 (203)
.+.+++...++... ...++..+|+||+|+ +..+++++.+|+++++|||||++|+....++++.|.++..+|.
T Consensus 128 ~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 45566777777644 467788999999999 8999999999999999999999999999999999998875543
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.49 E-value=8.1e-08 Score=85.01 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCCeEEEEecCCC
Q psy8397 56 SGGQKKRLSIALELI-------DNPPIMFLDEPTTGLDSNS------------TNQCVAMLKALAR-GGRTIVCTIHQPS 115 (203)
Q Consensus 56 SgGqrqrl~iA~aL~-------~~P~vLlLDEPt~gLD~~~------------~~~i~~~l~~l~~-~g~tvi~~tH~~~ 115 (203)
|.+++|++.++++++ .+|+++++||||+++|+.. ...++..|+++++ .|+|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 688999999999999 6899999999999999852 3566666777665 4999999999864
No 106
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.48 E-value=1.9e-09 Score=94.45 Aligned_cols=84 Identities=8% Similarity=-0.059 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+.+.++++.++ ....+.++..|||||+||+++|++++.+|+|||||||+..+|+.. ..+...=-..|+++|
T Consensus 156 ~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a 226 (312)
T 3aez_A 156 RALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDA 226 (312)
T ss_dssp HHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEEC
Confidence 56778888888 555678889999999999999999999999999999999998521 012221124567777
Q ss_pred CCCchhhhhhhcc
Q psy8397 113 QPSATIFEMVDHL 125 (203)
Q Consensus 113 ~~~~~~~~~~~~~ 125 (203)
+.+.....+++|.
T Consensus 227 ~~~~~~~R~i~R~ 239 (312)
T 3aez_A 227 RIEDIEQWYVSRF 239 (312)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7655444455554
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.47 E-value=1e-10 Score=94.52 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCcccccccCCCCCHHHH----HHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH
Q psy8397 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQK----KRLSIALELIDNPPIMFLDEPTTG-------LDSNSTNQCVAMLKAL 100 (203)
Q Consensus 32 ~~~v~~~L~~~~L~~~~~~~v~~LSgGqr----qrl~iA~aL~~~P~vLlLDEPt~g-------LD~~~~~~i~~~l~~l 100 (203)
.+++.+.++.+++.+..+.++..+|+|++ ||+++|++++.+|+++++||||++ ||+.....+.+.+++.
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRD 146 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 35677888888888888888999999974 688999999999999999999999 9999999999988875
Q ss_pred -HhCCCeEEEEecCC
Q psy8397 101 -ARGGRTIVCTIHQP 114 (203)
Q Consensus 101 -~~~g~tvi~~tH~~ 114 (203)
...|.|++.++|+.
T Consensus 147 ~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 147 VLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHSCCCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHH
Confidence 45699999999975
No 108
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.45 E-value=9.6e-10 Score=90.72 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSI-----ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR----- 102 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~i-----A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~----- 102 (203)
..++++++...+. ..+ .+|||||+||++| +++++.+|++++|||||+++|..+...+.+.+..+.+
T Consensus 105 ~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~ 180 (218)
T 1z6g_A 105 SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEA 180 (218)
T ss_dssp HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 3466677654432 122 5789999999999 8999999999999999999999988888888776543
Q ss_pred --CCCeEEEEecCCCc
Q psy8397 103 --GGRTIVCTIHQPSA 116 (203)
Q Consensus 103 --~g~tvi~~tH~~~~ 116 (203)
.+.+.|+++|++++
T Consensus 181 h~~~~d~iiv~~~~~e 196 (218)
T 1z6g_A 181 NLLNFNLSIINDDLTL 196 (218)
T ss_dssp TTSCCSEEEECSSHHH
T ss_pred cccCCCEEEECCCHHH
Confidence 46788999998765
No 109
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.37 E-value=6.5e-07 Score=76.21 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397 62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131 (203)
Q Consensus 62 rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~ 131 (203)
|++||++|..+|+++++|||| |+.+...+ ++. ...|.+|++++|+.+ +...|+++.....+
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~~ 148 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIFPL 148 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTSCG
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhcCc
Confidence 899999999999999999999 98886544 333 356999999999977 46788888775443
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.28 E-value=2.5e-08 Score=81.31 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=39.8
Q ss_pred cccCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCeEE
Q psy8397 49 HTLCGRLSGGQKKRL-SIAL---ELIDNPPIMFLDE--PTTGLDSNSTNQCVAMLKALARGGRTIV 108 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl-~iA~---aL~~~P~vLlLDE--Pt~gLD~~~~~~i~~~l~~l~~~g~tvi 108 (203)
.++...+|+|||+++ ++++ |++.+|++||||| |+..+|+.. ++.|.++.++..++|
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~~l~~~l~~~~~~i 139 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQAVRQTLSTPGTII 139 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HHHHHHHHHCSSCCE
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HHHHHHHHhCCCcEE
Confidence 444557999999888 4444 5799999999999 899999865 444455443444444
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.26 E-value=2.3e-06 Score=67.28 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=44.2
Q ss_pred HHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCch
Q psy8397 68 ELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 117 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~ 117 (203)
..+.+|++|+||||++ ++|+..+..+.+++.....+|+++|++||.+.++
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 3456999999999985 9999999999999999888899999999998653
No 112
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.22 E-value=1.3e-08 Score=88.34 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=50.8
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 47 SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 47 ~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
..+.++.++|||||||+.+||+++ ++++||||+ |||+... +.++++..+ +.++|+++||+.
T Consensus 106 ~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 106 QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 345788899999999999998886 999999998 5999873 566666654 889999999975
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.20 E-value=2e-06 Score=76.62 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=48.6
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397 64 SIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST 132 (203)
Q Consensus 64 ~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~ 132 (203)
+||++|.++|++|++|||| |... ++.+.+++..|.||++|+|+.+.. +.|+|+..+-.+.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~--~~~dRli~l~~~~ 247 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAA--KTIDRVVDVFPAE 247 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHH--HHHHHHHHTSCHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHH--HHHHHHhhhcCcc
Confidence 9999999999999999999 6544 445555567899999999999853 7899997765443
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.04 E-value=1.5e-05 Score=64.63 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=38.8
Q ss_pred CCCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 54 RLSGGQKKR-LSIALELI--DNPPIMFLDEPTTGLDSN-------S-----TNQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 54 ~LSgGqrqr-l~iA~aL~--~~P~vLlLDEPt~gLD~~-------~-----~~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
..+..+... +.-+..++ .+|+++++|||++.+|+. . ...++..|++++++ |.|||+++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 456665433 33333343 589999999999999985 2 34566666666654 999999999864
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.01 E-value=7.7e-06 Score=63.70 Aligned_cols=47 Identities=6% Similarity=0.154 Sum_probs=40.0
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCe-EEEEecCCC
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT-IVCTIHQPS 115 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~t-vi~~tH~~~ 115 (203)
+++.+|++|+||||++ +++..+..+++.+..+.++|++ +|++||...
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 4577899999999998 6666688899999998888888 999999654
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.95 E-value=1.6e-08 Score=80.31 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC-CCchhhhhhhccccC
Q psy8397 56 SGGQKKRLSIAL------ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ-PSATIFEMVDHLGLD 128 (203)
Q Consensus 56 SgGqrqrl~iA~------aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~-~~~~~~~~~~~~~~~ 128 (203)
|+|++|++.++. +++.+|+...+|+ ++|+..++. ++.+..+...+.++|.+||. ++
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~------------- 158 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPT------------- 158 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGG-------------
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChh-------------
Confidence 788888887787 8899998888884 899998888 88888876556777777776 54
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeEEeeCCcccc
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANT 184 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i~~~g~~~~~ 184 (203)
.+.+.||+|+ ++|++++.|+++-+
T Consensus 159 ------------------------------~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 159 ------------------------------NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp ------------------------------GHHHHHHHHH--HCGGGSCC------
T ss_pred ------------------------------hHHHHHHHHh--hCCcEEEeecCCch
Confidence 3567788877 89999998887643
No 117
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.84 E-value=4.4e-07 Score=79.12 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCc
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSA 116 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~ 116 (203)
++...+||++|||+++.+|+.++| +||+.+...+++.++.+.+. |.|+|++||+...
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 455668999999999999995544 55555556677777887765 9999999998543
No 118
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.81 E-value=7.8e-07 Score=73.96 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=51.3
Q ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+.+.++.+ ....+.++..||+||+||+.+ ++++.+|+++|||||....+.. + .++ .+.||+++||+.
T Consensus 99 ~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l----~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 99 MHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----I----RDM--FHLRLFVDTDSD 165 (245)
T ss_dssp HHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----H----HTT--CSEEEEEECCHH
T ss_pred HHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----H----HHh--cCeEEEEECCHH
Confidence 34455543 455678899999999999988 5888999999999998888753 1 222 378999999973
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=4.5e-05 Score=65.54 Aligned_cols=72 Identities=10% Similarity=0.120 Sum_probs=53.7
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCch---hhhhhhccccCCCchhHHHHHHHHh
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT---IFEMVDHLGLDSNSTNQCVAMLKAL 142 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (203)
+..+|+++|+|||++ ||+.+...+++.+.+.. .+.++|++||++... +...|..+-+..-+..+..+.++..
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHH
Confidence 788999999999999 99999999999998853 478999999998653 3344545555666666777777654
No 120
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.76 E-value=6.2e-05 Score=71.13 Aligned_cols=78 Identities=15% Similarity=0.262 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CCeEEEEecCCCchhhhhhhccccCCCchhH
Q psy8397 63 LSIALELIDNPPIMFLDEP------TTGLDSNSTNQCVAMLKALARG--GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQ 134 (203)
Q Consensus 63 l~iA~aL~~~P~vLlLDEP------t~gLD~~~~~~i~~~l~~l~~~--g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~ 134 (203)
+.++.+....|+++|+||| |+|||+..+..+.++++++.++ +.++++++|+++.+ ...
T Consensus 137 i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--------------~~~ 202 (608)
T 3szr_A 137 ITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--------------TTE 202 (608)
T ss_dssp EEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--------------TCH
T ss_pred HHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--------------cHH
Confidence 3344445568999999999 9999999999999999997543 77899999997642 223
Q ss_pred HHHHHHHhhh-CCceEEEeec
Q psy8397 135 CVAMLKALAR-GGRTIVCTIH 154 (203)
Q Consensus 135 ~~~~~~~~~~-~g~tvi~~~h 154 (203)
+...++.+.. .+.||+++++
T Consensus 203 ~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 203 ALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp HHHHHHHHCSSCCSEEEEEEC
T ss_pred HHHHHHHHhhcCCceEEEecc
Confidence 4445555533 4577777777
No 121
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.47 E-value=0.0007 Score=61.32 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=52.4
Q ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH--------HHHHHHHHHHHHHHhC-
Q psy8397 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI--DNPPIMFLDEPTTGLDS--------NSTNQCVAMLKALARG- 103 (203)
Q Consensus 35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~--~~P~vLlLDEPt~gLD~--------~~~~~i~~~l~~l~~~- 103 (203)
+.+.++.++..+..-.....+|.++.+ +.++.++ ++|+++++|+++...++ .....+.+.|+.++++
T Consensus 276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~ 353 (454)
T 2r6a_A 276 LTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAREL 353 (454)
T ss_dssp HHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 334444443333333335679999887 4566666 78999999999987743 3345677778888765
Q ss_pred CCeEEEEec
Q psy8397 104 GRTIVCTIH 112 (203)
Q Consensus 104 g~tvi~~tH 112 (203)
|.+||+++|
T Consensus 354 ~i~vi~~sq 362 (454)
T 2r6a_A 354 EVPVIALSQ 362 (454)
T ss_dssp TCCEEEEEC
T ss_pred CCeEEEEec
Confidence 999999999
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.41 E-value=1.2e-06 Score=72.54 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=43.1
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q psy8397 46 LSKHTLCGRLSGGQKKRLSIALEL-IDNPPIMFLD----EPTTGLDSNSTNQCVAMLKALAR 102 (203)
Q Consensus 46 ~~~~~~v~~LSgGqrqrl~iA~aL-~~~P~vLlLD----EPt~gLD~~~~~~i~~~l~~l~~ 102 (203)
...++++..||| |+ +++ +.+|++++|| |||+|||+.+...+.+.++.+.+
T Consensus 144 r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 144 RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred HHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 345777888999 55 677 9999999999 99999999999999999988764
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.38 E-value=1.1e-05 Score=70.08 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 40 DTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 40 ~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
..+++....++.. ++|+||+||+..+++++.+|+++ ||| ..+.+.+++++ .+.||+++||.+.
T Consensus 128 ~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 128 ALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp EEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred EEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 3445544444443 79999999999889999999987 998 67888888875 5899999999864
No 124
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.37 E-value=0.00039 Score=62.70 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=34.3
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 71 DNPPIMFLDEPTTGLDSNST------------NQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~------------~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
.+|+++++|||++.+|+... ..+++.|++++++ |.|||+++|..
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 57999999999999986432 5677888888765 99999999984
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.28 E-value=4.3e-05 Score=67.21 Aligned_cols=64 Identities=11% Similarity=-0.102 Sum_probs=48.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397 50 TLCGRLSGGQKKRLSIALELI-DNPPIMFLDE---PT------TGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~-~~P~vLlLDE---Pt------~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~ 113 (203)
+.+..+|+|++++..+++++. .+|+++|||| |+ .++|+..+..+.+.|+++.++ |.+|++++|.
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 254 TQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 344457788888888888774 6999999999 65 589999999999999987654 8999999975
No 126
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.27 E-value=3.3e-05 Score=70.24 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 54 RLSGGQKKRLSIALELIDNPP---IMFLDEPT-TGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~~P~---vLlLDEPt-~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.++.+++||++|||+++.+|+ +|++|||| .|||+... +.++.+. .+.++|++.|-.+
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 356778889999999999999 99999999 69998773 4455554 4788888888754
No 127
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.26 E-value=0.0004 Score=61.71 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccC
Q psy8397 62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLD 128 (203)
Q Consensus 62 rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~ 128 (203)
+.+|+++|..+|+++++|||+ |+.... ..++. ...|.+|+.|+|..+ +.+.|+|+...
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 468999999999999999999 766533 34444 356999999999966 56788887553
No 128
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.26 E-value=8e-05 Score=67.62 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecCC
Q psy8397 36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA-LARGGRTIVCTIHQP 114 (203)
Q Consensus 36 ~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~-l~~~g~tvi~~tH~~ 114 (203)
+.++..+++. +.++.+||+|++|++.+|++|+..|.++++ +++|+... ..++.+++ +...|.+++++|---
T Consensus 237 ~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~ 308 (416)
T 1udx_A 237 RVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALT 308 (416)
T ss_dssp SEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTT
T ss_pred HhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCC
Confidence 3344445554 567788999999999999999999999999 99999877 44554444 445588888777543
No 129
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.00 E-value=0.0019 Score=57.06 Aligned_cols=116 Identities=18% Similarity=0.171 Sum_probs=75.3
Q ss_pred ccCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy8397 19 YSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98 (203)
Q Consensus 19 ~~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~ 98 (203)
|+..++..++ ..|+......+++....+ +.||.++.+|+..|...+.++++++.|+|... ...+...++
T Consensus 80 fSlEms~~ql---~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir 148 (338)
T 4a1f_A 80 FSLEMSAEQL---ALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLR 148 (338)
T ss_dssp EESSSCHHHH---HHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHH
T ss_pred EeCCCCHHHH---HHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHH
Confidence 3445676654 233333334444443332 57999999999999999999999999998654 336666677
Q ss_pred HHHhC--CCeEEEEecCCCchhhhhhhccccCCC------chh---HHHHHHHHh-hhCCceEEEeecCch
Q psy8397 99 ALARG--GRTIVCTIHQPSATIFEMVDHLGLDSN------STN---QCVAMLKAL-ARGGRTIVCTIHQPS 157 (203)
Q Consensus 99 ~l~~~--g~tvi~~tH~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~-~~~g~tvi~~~h~~~ 157 (203)
.+.++ |..+|++-|-- ++.. ... .....|+.+ ++.+.+|++++|--.
T Consensus 149 ~l~~~~gg~~lIVIDyLq------------lm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R 207 (338)
T 4a1f_A 149 KLKSQHKELGIAFIDYLQ------------LMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNR 207 (338)
T ss_dssp HHHHHCTTEEEEEEEEEE------------CCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred HHHHhcCCCCEEEEechH------------HhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 76643 68888876532 2111 112 334556666 556999999999643
No 130
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.97 E-value=2.7e-05 Score=67.24 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=32.6
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy8397 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~ 88 (203)
..+-..+||||+||+.+|++...+|+|||+|||++++|+.
T Consensus 129 p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 129 PKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred ccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 3445689999999999873333399999999999999985
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.68 E-value=0.0071 Score=48.59 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=34.4
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCCeEEEEecCCC
Q psy8397 71 DNPPIMFLDEPTTGL--DSNSTNQCVAMLKAL-ARGGRTIVCTIHQPS 115 (203)
Q Consensus 71 ~~P~vLlLDEPt~gL--D~~~~~~i~~~l~~l-~~~g~tvi~~tH~~~ 115 (203)
.+|+++++|+|++.+ |+....+++..+.++ ++.|.|||+++|...
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 589999999999987 665556666555555 456999999999864
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.58 E-value=0.00014 Score=57.06 Aligned_cols=56 Identities=7% Similarity=-0.129 Sum_probs=43.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 49 ~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
+.++..+|+|++|++.++|++..+|+++ +|+...+.+++.++.+...+..+|.+++
T Consensus 104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTT
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCC
Confidence 4456679999999999999999999876 6888888888887776543444555543
No 133
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.55 E-value=0.019 Score=49.43 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=82.3
Q ss_pred cCCCCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397 20 SHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA 99 (203)
Q Consensus 20 ~~~~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~ 99 (203)
+..++..++ ..++......+++....+.. ..||.++++|+..|...+.++++++.|+|... ...+...+++
T Consensus 103 slE~s~~~l---~~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~ 173 (315)
T 3bh0_A 103 SLEMGKKEN---IKRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQ 173 (315)
T ss_dssp ESSSCHHHH---HHHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHH
T ss_pred ECCCCHHHH---HHHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHH
Confidence 344666554 23333333334433332211 22899999999999999999999999998643 3456667777
Q ss_pred HHhC-CCe--EEEEecCCCchhhhhhhccccCCCchhHHHH---HHHHh-hhCCceEEEeecCch---------------
Q psy8397 100 LARG-GRT--IVCTIHQPSATIFEMVDHLGLDSNSTNQCVA---MLKAL-ARGGRTIVCTIHQPS--------------- 157 (203)
Q Consensus 100 l~~~-g~t--vi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~g~tvi~~~h~~~--------------- 157 (203)
+.++ |.. +|++-|--. ...-.-..+...++.. .|+.+ ++.+.+|++++|...
T Consensus 174 l~~~~~~~~~lVVID~l~~------l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dl 247 (315)
T 3bh0_A 174 TKRKNPGKRVIVMIDYLQL------LEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDL 247 (315)
T ss_dssp HHHTSSSCCEEEEEECGGG------SBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGG
T ss_pred HHHhcCCCCeEEEEeCchh------cCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHh
Confidence 7655 777 888876421 1000000111233333 34444 566999999999531
Q ss_pred ---hHHHhhcCEEEEEe
Q psy8397 158 ---ATIFEMVDHLYVIA 171 (203)
Q Consensus 158 ---~~i~~~~d~v~vl~ 171 (203)
..+...+|-|+++.
T Consensus 248 r~sg~ie~~aD~vi~L~ 264 (315)
T 3bh0_A 248 RESGQLEQDADIIEFLY 264 (315)
T ss_dssp TTTSHHHHHCSEEEEEE
T ss_pred hhhhhhHhhCCEEEEEe
Confidence 12567889988886
No 134
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.53 E-value=0.01 Score=52.22 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCeEEEEecCC
Q psy8397 61 KRLSIALELIDN--PPIMFLDEPTTGL----------DS---NSTNQCVAMLKAL----ARGGRTIVCTIHQP 114 (203)
Q Consensus 61 qrl~iA~aL~~~--P~vLlLDEPt~gL----------D~---~~~~~i~~~l~~l----~~~g~tvi~~tH~~ 114 (203)
+-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.+++| .+.|+|||+++|..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 456778888755 9999999999988 33 2223455555555 34599999999975
No 135
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.16 E-value=0.0014 Score=63.54 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=56.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEE-ecCCCchhhhhhh
Q psy8397 50 TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCT-IHQPSATIFEMVD 123 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~-tH~~~~~~~~~~~ 123 (203)
..+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.....+..+|+++ ||+.+ .+.+.++
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~ 260 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFN 260 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTT
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhc
Confidence 3445689999999999999999999999999996 999887777777666655556788885 89754 3344444
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.01 E-value=0.00016 Score=57.73 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHhC
Q psy8397 54 RLSGGQKKRLSIALELIDNPPIM-------FLDEPTTG---LDSNSTNQCVAMLKALARG 103 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~~P~vL-------lLDEPt~g---LD~~~~~~i~~~l~~l~~~ 103 (203)
.|||||+||++|||+++.+|++. .=|.|..+ +|......+.+.+.+..++
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence 49999999999999999999873 22444322 3455667777777665544
No 137
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.99 E-value=0.00016 Score=67.43 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=62.6
Q ss_pred HHHHHcCCcccccc---cCCCCCHHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397 37 DILDTIGLVLSKHT---LCGRLSGGQKKRL----------SIALELIDNPP-IMFLDEPTTGLDSNSTNQCVAMLKALAR 102 (203)
Q Consensus 37 ~~L~~~~L~~~~~~---~v~~LSgGqrqrl----------~iA~aL~~~P~-vLlLDEPt~gLD~~~~~~i~~~l~~l~~ 102 (203)
+++...|+.+..+. ....+|+||+|+. .+++++...|. ++++||++.-++. ....+.+.+..+.+
T Consensus 248 ~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~-~~~~~~~~l~~Lar 326 (512)
T 2ius_A 248 KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT-VGKKVEELIARLAQ 326 (512)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh-hhHHHHHHHHHHHH
Confidence 56777887654332 1235788887652 34566777898 8999999988873 33456666665543
Q ss_pred ---C-CCeEEEEecCCCc------hhhhhhhccccCCCchhHHHH
Q psy8397 103 ---G-GRTIVCTIHQPSA------TIFEMVDHLGLDSNSTNQCVA 137 (203)
Q Consensus 103 ---~-g~tvi~~tH~~~~------~~~~~~~~~~~~~~~~~~~~~ 137 (203)
. |.++|++||.++. ...++..||.+--.+......
T Consensus 327 ~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 327 KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp HCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred HhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 3 7899999999983 123455566554333333333
No 138
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.96 E-value=0.0099 Score=54.74 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCeEEEEecCCC
Q psy8397 57 GGQKKRLSIALELIDNPPIMFLDEP----------TTGLDSNSTNQCVAMLKALA----RGGRTIVCTIHQPS 115 (203)
Q Consensus 57 gGqrqrl~iA~aL~~~P~vLlLDEP----------t~gLD~~~~~~i~~~l~~l~----~~g~tvi~~tH~~~ 115 (203)
|+++.|-.+++|....|.+||+||+ +.|.|+...+.+.+++..+. ..+..||.+||.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6788899999999999999999999 34677777777777777764 34778999999974
No 139
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.70 E-value=0.015 Score=47.74 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=44.7
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCC--CchhHHHHHHH
Q psy8397 66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDS--NSTNQCVAMLK 140 (203)
Q Consensus 66 A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 140 (203)
+..++..++++||| ||+.++..+++.+. +|.||+++||++++. ..|+ +.+ +++.++...+.
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l----~~Rl-~~rG~~~~e~i~~rl~ 163 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIEL----DRRL-RGRGQDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHH----HHHH-HTTSCSCHHHHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHH----HHHH-HHcCCCCHHHHHHHHH
Confidence 44566779999999 99999999998776 589999999997653 2343 333 34555555554
No 140
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.55 E-value=0.025 Score=52.27 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=43.9
Q ss_pred cCCCCCHHHHHHHHHHHHH--hc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 51 LCGRLSGGQKKRLSIALEL--ID---------------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 51 ~v~~LSgGqrqrl~iA~aL--~~---------------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
..+.+||||+|-.-+|.+. ++ .=.+++|||. +-+|....+.++++++++ |.-+|+++=
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP 450 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAP 450 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECc
Confidence 4678999999965444432 22 1247999999 999999999999999865 566777774
No 141
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.47 E-value=0.026 Score=49.19 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=51.7
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe--cCCC
Q psy8397 48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTI--HQPS 115 (203)
Q Consensus 48 ~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t--H~~~ 115 (203)
.+.++..+|+|++|.+. +.+...++-++++| +|+.|+|......+++.+..... +..+|++. ||+.
T Consensus 225 ~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 225 LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 34566789999998876 55555677789999 99999999998888887776543 77777777 8875
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.36 E-value=2.6e-05 Score=70.45 Aligned_cols=51 Identities=12% Similarity=0.271 Sum_probs=40.6
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCeEEEEecCCCchhhhhhhcc
Q psy8397 72 NP--PIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQPSATIFEMVDHL 125 (203)
Q Consensus 72 ~P--~vLlLDEPt~gLD~~~~~~i~~~l~~l-~~~g~tvi~~tH~~~~~~~~~~~~~ 125 (203)
+| +++++|||+.++|+....+.++.++.+ .+.|.|++ +|.+.+ +.++|+++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~-~~~l~~~i 192 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKE-EQAIIEKV 192 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHH-HHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHH-HHHHHHHH
Confidence 89 999999999999999999999999998 66677764 887643 34444444
No 143
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.13 E-value=0.0011 Score=53.23 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=22.2
Q ss_pred hCCceEEEeecCchhHHHhhcCEEEEEe
Q psy8397 144 RGGRTIVCTIHQPSATIFEMVDHLYVIA 171 (203)
Q Consensus 144 ~~g~tvi~~~h~~~~~i~~~~d~v~vl~ 171 (203)
..|.|+++++|+++ ++..+||+++++.
T Consensus 176 ~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 176 QGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp GGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred hccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 45899999999998 5889999999874
No 144
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.02 E-value=0.022 Score=49.28 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=42.4
Q ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRL---SIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101 (203)
Q Consensus 35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl---~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~ 101 (203)
+..+++.+++.. +..+|+|+.+++ ++++++..+|+++|+|||.. ......+++.++++.
T Consensus 151 L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 151 LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 345666677653 345789999999 89999999999999999974 334445555555543
No 145
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.51 E-value=0.019 Score=50.14 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy8397 54 RLSGGQKKRLSIALEL---ID--NPPIMFLDEPT 82 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL---~~--~P~vLlLDEPt 82 (203)
.+|+|++||..++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 5899999999999999 76 89999999997
No 146
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.47 E-value=0.05 Score=49.00 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=38.4
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 71 DNPPIMFLDEPTTGLDS-NSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~-~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+|++||+||+..-.+. ..+..++..+..+...|..||++||.+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999876664 6778899999998888999999999854
No 147
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.17 E-value=0.1 Score=44.59 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=44.9
Q ss_pred HHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q psy8397 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP-TTGLDSNSTNQCVAMLKALA 101 (203)
Q Consensus 38 ~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEP-t~gLD~~~~~~i~~~l~~l~ 101 (203)
+.+..++.-..... ..+-.+.+|.+++.+...+++++|+||| +.++|......+.+..+.+.
T Consensus 148 ~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 148 LGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp HHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred hcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 44555664332111 2344556788999988899999999999 99999988888888777654
No 148
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.79 E-value=0.047 Score=48.51 Aligned_cols=38 Identities=11% Similarity=-0.027 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHH
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL 69 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL 69 (203)
..+++.++++.+|+.++.+.++.+|| ||+||++||+++
T Consensus 291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 34567788999999999999999999 999999999764
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.46 E-value=0.039 Score=47.35 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397 61 KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA 99 (203)
Q Consensus 61 qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~ 99 (203)
-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-
T Consensus 173 l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 173 FQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp HHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred HHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 345555 45999999999 999998877666554443
No 150
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.18 E-value=0.14 Score=44.89 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcccc
Q psy8397 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127 (203)
Q Consensus 56 SgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~ 127 (203)
+++..++-.|+.++..+|+.+++|||+. .+.++.++.+.....|++.++|..+ ..+.++|+..
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~ 298 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLAL 298 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHH
Confidence 3667789999999999999999999986 3566778777665668999999976 4566777755
No 151
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.86 E-value=0.1 Score=40.64 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy8397 61 KRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100 (203)
Q Consensus 61 qrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l 100 (203)
+...+|++++.+|+++++| ||++|+....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999987653
No 152
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.71 E-value=0.027 Score=46.17 Aligned_cols=83 Identities=8% Similarity=0.179 Sum_probs=55.0
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh
Q psy8397 79 DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 79 DEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~ 158 (203)
+.+...|..-.++++ .+.+.+..+-.-+|+ =.|. -++|..+...+.+.++.+.++|+|||+++|+++
T Consensus 128 ~~~~~~LSgGqkqrv-~laraL~~~p~lllL--DEPt---------s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~- 194 (214)
T 1sgw_A 128 KKKLGELSQGTIRRV-QLASTLLVNAEIYVL--DDPV---------VAIDEDSKHKVLKSILEILKEKGIVIISSREEL- 194 (214)
T ss_dssp TSBGGGSCHHHHHHH-HHHHHTTSCCSEEEE--ESTT---------TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-
T ss_pred CCChhhCCHHHHHHH-HHHHHHHhCCCEEEE--ECCC---------cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence 778888887776664 444555543222222 1121 145888889999999988666899999999998
Q ss_pred HHHhhcCEEEEEeCCeE
Q psy8397 159 TIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 159 ~i~~~~d~v~vl~~G~i 175 (203)
.+..+||++++ ..|+|
T Consensus 195 ~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENLHK-YSTKI 210 (214)
T ss_dssp TTSSEEEEGGG-GBC--
T ss_pred HHHHhCCEEEE-eCCcc
Confidence 46778888764 44554
No 153
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.66 E-value=0.08 Score=48.17 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCeEEEEecC
Q psy8397 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA-LARGGRTIVCTIHQ 113 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~-l~~~g~tvi~~tH~ 113 (203)
.|+-.. +.++++|..+++++++|+|+..|.+.....+.+.+++ +...|.+|+.+|.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 456555 7899999999999999999999999999999999987 88889999998865
No 154
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.87 E-value=0.35 Score=40.41 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 65 IALELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 65 iA~aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
+..++..+|+++++||+-. ..+.......++.+..+...|..++.|+|-
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEG
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccc
Confidence 3344557899999999864 244444445666666677779999999984
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.65 E-value=1 Score=38.15 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=35.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEecCCC
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR---GGRTIVCTIHQPS 115 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~---~g~tvi~~tH~~~ 115 (203)
.+|.+|++||+... |+.....+.+.+..+.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888887776665 5789999999873
No 156
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.39 E-value=0.37 Score=41.95 Aligned_cols=48 Identities=15% Similarity=-0.035 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCC
Q psy8397 60 KKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQP 114 (203)
Q Consensus 60 rqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~ 114 (203)
.+.-.+++++..++.+++||.+|. +.+.+.++.+.+ .|.|+|++||.-
T Consensus 231 ~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 231 DEMKKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 334458899988888888885543 456666777764 499999999963
No 157
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.18 E-value=0.1 Score=45.44 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397 52 CGRLSGGQKKRLSIALELID------NPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~------~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~ 101 (203)
...+|+|++|++..+.+++. .|++++ +|++|......+++.|.++.
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999987 688886 99999999999999998865
No 158
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.95 E-value=0.00011 Score=68.25 Aligned_cols=54 Identities=13% Similarity=0.056 Sum_probs=42.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE--EecCCCc
Q psy8397 51 LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC--TIHQPSA 116 (203)
Q Consensus 51 ~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~--~tH~~~~ 116 (203)
....+||||+||++++ ++ | |+||||...+.+++.+.++...|.|+++ +||++++
T Consensus 397 ~~~~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e 452 (511)
T 2oap_1 397 QTMWVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK 452 (511)
T ss_dssp EEEEESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH
T ss_pred EEEEEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH
Confidence 3446899999887664 11 7 9999999888888888877777999986 9999764
No 159
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.35 E-value=0.47 Score=38.70 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=33.5
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 60 KKRLSIALELI--DNPPIMFLDEPTT--GLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 60 rqrl~iA~aL~--~~P~vLlLDEPt~--gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+..+..|+..+ .+.++++|||.+. .++.....++++.|.. +-....||+|+...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCC
Confidence 55666677777 5689999999975 2333444566666653 22245555555554
No 160
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.33 E-value=11 Score=33.51 Aligned_cols=108 Identities=21% Similarity=0.192 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCCchhhhhhhcc--cc-C
Q psy8397 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHL--GL-D 128 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~~~~~~~~~~~--~~-~ 128 (203)
+.||..+.+++.-|...+.+.++.+.|+|. +++ ..+...++++.+ .|..+|++-+--. +..- +- .
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~---~~l~~~~~~l~~~~~~~lIvID~l~~------~~~~~~~~~~ 331 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL---MEVRARARRLVSQNQVGLIIIDYLQL------MSGPGSGKSG 331 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH---HHHHHHHHHHHHHSCCCEEEEECGGG------CBCC------
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHcCCCEEEEcChhh------cCCCcCCCCC
Confidence 579999999999988888888899988774 333 345556666654 4777777754311 0000 00 0
Q ss_pred CCchhH---HHHHHHHh-hhCCceEEEeecCchh------------------HHHhhcCEEEEEe
Q psy8397 129 SNSTNQ---CVAMLKAL-ARGGRTIVCTIHQPSA------------------TIFEMVDHLYVIA 171 (203)
Q Consensus 129 ~~~~~~---~~~~~~~~-~~~g~tvi~~~h~~~~------------------~i~~~~d~v~vl~ 171 (203)
.+...+ ....++.+ ++.+.+|++++|-... .+...+|.|+++.
T Consensus 332 ~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 332 ENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 011222 33445555 5569999999884210 2456889999885
No 161
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.79 E-value=0.75 Score=37.99 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS----------TNQCVAMLKALAR----GGRTIVCTIHQPS 115 (203)
Q Consensus 56 SgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~----------~~~i~~~l~~l~~----~g~tvi~~tH~~~ 115 (203)
+++++.+..++.+...+|.+||+||+.+.++... ...++..+..... .+..||.+|+.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 4678888888989889999999999987655322 2233333333221 2356778888653
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.25 E-value=0.00057 Score=57.89 Aligned_cols=63 Identities=17% Similarity=0.064 Sum_probs=47.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 50 TLCGRLSGGQKKRLSIALELIDNPPI--MFLDEPTTGLDSNST--------NQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~~~P~v--LlLDEPt~gLD~~~~--------~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
++.-.+|+| ||+++++++..+|++ +|+||.|+.+|...+ ..+.+...++..+|+|.+.+.|.+
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~ 240 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA 240 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHH
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 333457888 899999999999999 999999999997632 234444445556788887777764
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.25 E-value=0.41 Score=37.10 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397 63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101 (203)
Q Consensus 63 l~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~ 101 (203)
...|++++.+|+++++| |+++|+....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999877643
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=86.04 E-value=0.51 Score=41.49 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCcccc----cccCCCCCHHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy8397 33 GLVDDILDTIGLVLSK----HTLCGRLSGGQKKRLSIA----LEL-IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~----~~~v~~LSgGqrqrl~iA----~aL-~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~ 101 (203)
+.+.++++.+++.+.. ..++..+|+|+++++.++ +.+ ..+|++ +|+|++|......+++.|.++.
T Consensus 279 ~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 279 QSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 3456778887765443 456677898888888877 555 444454 8999999999999999888765
No 165
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.61 E-value=0.039 Score=47.54 Aligned_cols=44 Identities=27% Similarity=0.271 Sum_probs=34.4
Q ss_pred cCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397 42 IGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102 (203)
Q Consensus 42 ~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~ 102 (203)
+++.. ..++++.||+|++||+.++ .+||+.+...+.++|++..+
T Consensus 151 ~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 151 FTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp CEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH
T ss_pred eEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH
Confidence 44433 5677889999999998554 78888888999999888764
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.63 E-value=0.0044 Score=49.67 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHH-HHHhcCCCEEEEeCCC
Q psy8397 53 GRLSGGQKKRLSIA-LELIDNPPIMFLDEPT 82 (203)
Q Consensus 53 ~~LSgGqrqrl~iA-~aL~~~P~vLlLDEPt 82 (203)
..+|+||+|++++| ++++.++.++++|||.
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 35799999999998 8888999888899984
No 167
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.11 E-value=0.014 Score=52.88 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q psy8397 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF 77 (203)
Q Consensus 37 ~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLl 77 (203)
+.|..+|+.... .+..|||||+|| ||++|+.+|++..
T Consensus 278 ~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 278 TRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 346677887653 678899999999 9999999999876
No 168
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.04 E-value=1.5 Score=36.72 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=35.2
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 70 IDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 70 ~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
..+|.+||+||+.. .-+......++..+..+...|..+|++++..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35699999999865 3344778889999988888888888888754
No 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.95 E-value=0.00096 Score=59.25 Aligned_cols=60 Identities=20% Similarity=0.133 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 54 RLSGGQKKRLSIALELIDNPPI--MFLDEPTTGLDSNS---T-----NQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~~P~v--LlLDEPt~gLD~~~---~-----~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.+|+| ||+++++++..+|++ +|+||.|+.||... . ..+.+...++..+|.|.+.+.|.+.
T Consensus 283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 45888 889999999999999 99999999998651 1 2244444445567998888888764
No 170
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.94 E-value=0.0049 Score=52.17 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=37.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy8397 48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT------------GLDSNSTNQCVAML 97 (203)
Q Consensus 48 ~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~------------gLD~~~~~~i~~~l 97 (203)
.++.+..|||||+||+.|++|+.++|++| |||+. -.|...+..+++.+
T Consensus 131 ~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 131 VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 34556679999999999999999999985 99864 23666777766644
No 171
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=83.35 E-value=0.22 Score=46.44 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=40.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy8397 50 TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKA 99 (203)
Q Consensus 50 ~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~ 99 (203)
...+.+|+|++|++..++....++.+|||||... |++.....+++.|.+
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 3446799999999999999999999999999988 899888888888875
No 172
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=83.35 E-value=7.1 Score=35.00 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCe--EEEEecCCCchhhhhhhccccCCCc
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRT--IVCTIHQPSATIFEMVDHLGLDSNS 131 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~t--vi~~tH~~~~~~~~~~~~~~~~~~~ 131 (203)
|+..+.+++.-|...+.+.++++.|+|. +++ ..+...++++.+ .|.. +|++-+--. ...-.-..+.
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~---~~i~~~ir~l~~~~~~~~~lIVID~Lq~------~~~~~~~~~r 331 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSV---NYIWSKTRQTKRKNPGKRVIVMIDYLQL------LEPAKANDSR 331 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBH---HHHHHHHHHHHHHSCSSCEEEEEECSTT------SBCSCSSSCH
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHhCCCCeEEEEecHHh------ccCCCCCCCH
Confidence 8888899999888888888899989874 444 345556666654 3777 777755311 1000001122
Q ss_pred hhHHH---HHHHHh-hhCCceEEEeecCchh------------------HHHhhcCEEEEEeC
Q psy8397 132 TNQCV---AMLKAL-ARGGRTIVCTIHQPSA------------------TIFEMVDHLYVIAE 172 (203)
Q Consensus 132 ~~~~~---~~~~~~-~~~g~tvi~~~h~~~~------------------~i~~~~d~v~vl~~ 172 (203)
..++. ..++.+ ++.+.+|++++|-... .+...+|-|+++..
T Consensus 332 ~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 332 TNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 22333 345555 5569999999994321 26678899988863
No 173
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.95 E-value=0.99 Score=38.52 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=37.5
Q ss_pred HHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 60 KKRLSIALELI---DNPPIMFLDEPTTGLDS--------NS----TNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 60 rqrl~iA~aL~---~~P~vLlLDEPt~gLD~--------~~----~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
.+.+..++.++ .+|+++++|+.++-... .. ..+++..|+.++++ +.+||++.|-.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 35677777777 67999999999875432 12 23445555555554 99999998864
No 174
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=82.60 E-value=0.19 Score=42.25 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=18.0
Q ss_pred cccccCCCCCHHHHH-HHHHHHHHhcC
Q psy8397 47 SKHTLCGRLSGGQKK-RLSIALELIDN 72 (203)
Q Consensus 47 ~~~~~v~~LSgGqrq-rl~iA~aL~~~ 72 (203)
..|.|...|.-..++ -..+-+.+..+
T Consensus 170 llDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 170 FLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 469999999866554 45566666654
No 175
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.96 E-value=0.2 Score=43.52 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=38.9
Q ss_pred ccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCeE
Q psy8397 124 HLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~i 175 (203)
.|.+|+....++.+.++++...+.|+++++|..+ +...+||++++.+|..
T Consensus 243 ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 243 RIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred EEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 3445666666677788888766678999999987 5788999999998863
No 176
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=80.80 E-value=0.83 Score=42.86 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=48.4
Q ss_pred CCCCCHH-HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397 52 CGRLSGG-QKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113 (203)
Q Consensus 52 v~~LSgG-qrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~ 113 (203)
.+.|+.+ .++...+.+.++.+|.-++++.+|+++|... ....++++++... +.||+++||-
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~-~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT-TEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT-CHHHHHHHHHCSSCCSEEEEEECG
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc-HHHHHHHHHHhhcCCceEEEecch
Confidence 6666544 4588889999999999999999999999884 4577788887655 5799999983
No 177
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=80.80 E-value=1.7 Score=37.53 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=36.3
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 61 KRLSIALELI----DNPPIMFLDEPTTGLDSN--------S----TNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 61 qrl~iA~aL~----~~P~vLlLDEPt~gLD~~--------~----~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
+.+..++.++ .+++++++|+.++-.... . ...+...|+.++++ |.+||+++|-.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 4555556665 679999999999865432 1 24455556666554 89999999874
No 178
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=80.46 E-value=0.046 Score=43.54 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397 65 IAL-ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102 (203)
Q Consensus 65 iA~-aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~ 102 (203)
.++ +++.+|++++|||||+++|..+...+.+.|....+
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~ 154 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAART 154 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 455 67788888888999999999888888888877653
No 179
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=80.12 E-value=7.2 Score=29.76 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=45.7
Q ss_pred HHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 98 KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 98 ~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
......+-.+|++|+- |.+....+.++..++.|.++|.+|......+.+++|.++.+..|.
T Consensus 105 ~~~~~~~Dvvi~iS~s----------------G~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~~ 165 (188)
T 1tk9_A 105 EALGNEKDVLIGISTS----------------GKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD 165 (188)
T ss_dssp HHHCCTTCEEEEECSS----------------SCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCSC
T ss_pred HHhCCCCCEEEEEeCC----------------CCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCCC
Confidence 3334456777888874 556677788887788899888888877777899999988776553
No 180
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=77.53 E-value=0.47 Score=37.15 Aligned_cols=94 Identities=10% Similarity=0.078 Sum_probs=57.2
Q ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 35 v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+.++.+.+|.... .|.|+.+|..++.....+|+.+... .+.++|..+..+.+.+... .+.++|+.+|.+
T Consensus 47 ~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l 115 (206)
T 1jjv_A 47 LSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLL 115 (206)
T ss_dssp HHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTT
T ss_pred HHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechh
Confidence 4455666664321 3678999999999888887654333 3456676666666555432 356899999987
Q ss_pred Cch-hhhhhhccccCCCchhHHHHHH
Q psy8397 115 SAT-IFEMVDHLGLDSNSTNQCVAML 139 (203)
Q Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 139 (203)
.+. +...|+.+.+...+.....+.+
T Consensus 116 ~e~~~~~~~d~vi~l~~~~e~~~~Rl 141 (206)
T 1jjv_A 116 IENKLTALCDRILVVDVSPQTQLARS 141 (206)
T ss_dssp TTTTCGGGCSEEEEEECCHHHHHHHH
T ss_pred hhcCcHhhCCEEEEEECCHHHHHHHH
Confidence 654 4567777777777766666665
No 181
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=77.12 E-value=9 Score=33.97 Aligned_cols=59 Identities=20% Similarity=0.136 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397 53 GRLSGGQKKRLSIALELI--DNPPIMFLDEPTTGLDS----------NSTNQCVAMLKALARG-GRTIVCTIHQ 113 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~--~~P~vLlLDEPt~gLD~----------~~~~~i~~~l~~l~~~-g~tvi~~tH~ 113 (203)
..+|..+. .+.++.+. ++|+++++|..+.-... .....+...|+.++++ +.+||+++|-
T Consensus 291 ~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 291 PDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp TTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 45676664 34455554 58999999998754432 1224566677777765 9999999984
No 182
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.61 E-value=1.5 Score=34.01 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=27.6
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCCeEEEEecCCC
Q psy8397 70 IDNPPIMFLDEPTT-GLDSNSTNQCV-AMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 70 ~~~P~vLlLDEPt~-gLD~~~~~~i~-~~l~~l~~~g~tvi~~tH~~~ 115 (203)
+.++++|+|||+-. .++...+..++ .++......+..+|++|+...
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~ 160 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDM 160 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCH
Confidence 35678999999932 34443344344 466665456677777777643
No 183
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=76.21 E-value=8.4 Score=29.63 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=44.3
Q ss_pred HHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCC
Q psy8397 99 ALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEG 173 (203)
Q Consensus 99 ~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G 173 (203)
....++-.+|++|+- |.+......++..++.|..+|.+|......+.+++|.++.+..+
T Consensus 112 ~~~~~~d~vI~iS~S----------------G~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 112 ALGNEGDVLIGYSTS----------------GKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHCCTTCEEEEECSS----------------SCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred hhCCCCCEEEEEeCC----------------CCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 334457788888874 55566777888778889888888887766788999988876654
No 184
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=75.66 E-value=6.1 Score=32.28 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
+|+++++||-.. |+. ...+.++.++..|.+||++.|+.+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKN 127 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEecccc
Confidence 589999999964 654 355566777767999999999543
No 185
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=74.43 E-value=7.2 Score=34.05 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=34.1
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---H-hCCCeEEEEecCC
Q psy8397 61 KRLSIALELI--DNPPIMFLDEPTTGLDSN-------------STNQCVAMLKAL---A-RGGRTIVCTIHQP 114 (203)
Q Consensus 61 qrl~iA~aL~--~~P~vLlLDEPt~gLD~~-------------~~~~i~~~l~~l---~-~~g~tvi~~tH~~ 114 (203)
+.+.+++.++ .+|+++++|.+++-.... ..+.+.+.+++| . +.++|||+++|-.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 4456666664 689999999999866321 112344455554 3 3499999998864
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.11 E-value=2.4 Score=32.98 Aligned_cols=44 Identities=7% Similarity=0.134 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCe-EEEEecCC
Q psy8397 71 DNPPIMFLDEPTTGL-DSNSTNQCVAMLKALARGGRT-IVCTIHQP 114 (203)
Q Consensus 71 ~~P~vLlLDEPt~gL-D~~~~~~i~~~l~~l~~~g~t-vi~~tH~~ 114 (203)
.+|.+|++||...-- +......+++.+......+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965422 223367788888887766665 88888754
No 187
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=73.60 E-value=10 Score=28.73 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCC
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEG 173 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G 173 (203)
+|.+....+.++..++.|..+|.+|......+.+++|.++.+..|
T Consensus 106 sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 106 SGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp SSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 456677888888888889989898888777789999999887754
No 188
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=73.40 E-value=11 Score=28.76 Aligned_cols=56 Identities=9% Similarity=0.076 Sum_probs=43.1
Q ss_pred CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 103 GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 103 ~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
++-.+|++|+- |.+......++..++.|..+|.+|......+.+++|.++.+..+.
T Consensus 79 ~~d~vI~iS~s----------------G~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 79 EGDLVIIGSGS----------------GETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp TTCEEEEECSS----------------SCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred CCCEEEEEcCC----------------CCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 45677777764 455667777888888899899988887667889999988877654
No 189
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=72.91 E-value=1.1 Score=36.77 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCC
Q psy8397 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74 (203)
Q Consensus 33 ~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~ 74 (203)
++++++-+.+|. ++.++..+.||||..|+...+++|+..|+
T Consensus 53 ~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 53 DAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 346777788898 68899999999999999999999998886
No 190
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=70.24 E-value=0.04 Score=50.66 Aligned_cols=44 Identities=14% Similarity=0.024 Sum_probs=32.1
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCc
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSA 116 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~ 116 (203)
|||..+ +|||+ ||++.+|| .+..+. .+|.++ +.++.+++|.+++
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~---~eLt~~~~~~iP~vsa~md~ 72 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLT---SALTRKITLKTPLISSPMDT 72 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCC---EESSSSCEESSCEEECCCTT
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEE---eeccCCeeEeceEEEEehhh
Confidence 789999 99999 99999999 443322 234333 5678888888764
No 191
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.20 E-value=18 Score=31.65 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=34.7
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCH----------------HHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 61 KRLSIALELI--DNPPIMFLDEPTTGLDS----------------NSTNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 61 qrl~iA~aL~--~~P~vLlLDEPt~gLD~----------------~~~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
+.+.+++.++ .+|+++++|+-++-... .....++..|..++++ |.|||++.|-.
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~ 198 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIR 198 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeee
Confidence 4456666665 57999999987654431 1122344455566655 89999998873
No 192
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=70.15 E-value=16 Score=28.11 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh---cCEEEEEeCC
Q psy8397 99 ALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM---VDHLYVIAEG 173 (203)
Q Consensus 99 ~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~---~d~v~vl~~G 173 (203)
.....+-.+|++|+- |.+..+...++..++.|..+|.+|......+.++ +|.++.+..+
T Consensus 105 ~~~~~~DvvI~iS~S----------------G~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 105 ALGHAGDVLLAISTR----------------GNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp HHCCTTCEEEEECSS----------------SCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCS
T ss_pred hcCCCCCEEEEEeCC----------------CCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCC
Confidence 334456677888874 5667778888888888998988888877678888 8987776544
No 193
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=69.93 E-value=12 Score=28.58 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=43.6
Q ss_pred CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 103 GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 103 ~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
++-.+|++|+- |.+......++..++.|..+|.+|......+.+++|.++.+..+.
T Consensus 87 ~~d~~i~iS~s----------------G~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 142 (187)
T 3sho_A 87 PTDLMIGVSVW----------------RYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRG 142 (187)
T ss_dssp TTEEEEEECCS----------------SCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCC
T ss_pred CCCEEEEEeCC----------------CCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCC
Confidence 35566777764 556677778888888899999999887777899999998877654
No 194
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.13 E-value=0.97 Score=37.99 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=26.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCeEEEEecCCC
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKAL---ARGGRTIVCTIHQPS 115 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l---~~~g~tvi~~tH~~~ 115 (203)
.|.+|++||+....+......+..+++.+ ...+.++|++||++.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 38899999997755321122333333333 223678999999864
No 195
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=69.07 E-value=8.1 Score=32.21 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=39.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC---------CCchhhhhhhcc
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ---------PSATIFEMVDHL 125 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~---------~~~~~~~~~~~~ 125 (203)
+.+.+++++||----.+ +.+.++.+...|..||++.++ ...++..++|.+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~V 146 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESV 146 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEE
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccE
Confidence 36789999999977643 666666666789999999999 666677777666
No 196
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.91 E-value=4.5 Score=35.04 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=39.1
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 71 DNPPIMFLDEPTTGLD---SNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD---~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
..|.++++||--.-++ +.....+.+.+++.++.|..++++||.++.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 3588999999988884 667777888888888889999999999875
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=68.39 E-value=0.29 Score=41.76 Aligned_cols=35 Identities=3% Similarity=-0.108 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCcc-cccccCCCCCHHHHHHHHHHH
Q psy8397 33 GLVDDILDTIGLVL-SKHTLCGRLSGGQKKRLSIAL 67 (203)
Q Consensus 33 ~~v~~~L~~~~L~~-~~~~~v~~LSgGqrqrl~iA~ 67 (203)
.++.++++.++|.+ ..+++++.|||.++|+++|||
T Consensus 265 ~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 265 CAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35889999999986 788999999998899999986
No 198
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=68.20 E-value=13 Score=32.09 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=40.2
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
||.+......++..++.|..+|.+|..+...+.+.+|.++.+..|.
T Consensus 101 SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 146 (344)
T 3fj1_A 101 SGKSPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGP 146 (344)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecCCCC
Confidence 5778888888888888899999999988888999999999888775
No 199
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=68.19 E-value=15 Score=29.02 Aligned_cols=61 Identities=7% Similarity=0.108 Sum_probs=45.9
Q ss_pred HHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhc---CEEEEEeCC
Q psy8397 97 LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV---DHLYVIAEG 173 (203)
Q Consensus 97 l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~---d~v~vl~~G 173 (203)
+..+...+-.+|++|+- |.+..+...++..++.|..+|.+|......+.+++ |.++.+...
T Consensus 108 l~~~~~~~Dvvi~iS~S----------------G~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~ 171 (201)
T 3trj_A 108 VAALGNEDDILLVITTS----------------GDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSD 171 (201)
T ss_dssp HHHHCCTTCEEEEECSS----------------SCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCC
T ss_pred HHhhCCCCCEEEEEeCC----------------CCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCC
Confidence 33434556777887764 56677888888888889999888887777788999 998877654
No 200
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.15 E-value=6.8 Score=32.56 Aligned_cols=69 Identities=7% Similarity=0.147 Sum_probs=45.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCch---hhhhhhccccCCCchhHHHHHHHHh
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT---IFEMVDHLGLDSNSTNQCVAMLKAL 142 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (203)
+++++++|| ...+++.....+.+.+.+... ...+|++++++... +...|..+-+..-+..+....++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 204 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFI 204 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHH
Confidence 456999999 788999888888888776532 34566677665433 3344444555566666666666644
No 201
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=67.99 E-value=9.9 Score=29.53 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=37.0
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
+|.+......++..++.|..+|.+|......+.+++|.++.+..+.
T Consensus 102 sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 147 (201)
T 3fxa_A 102 GGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSK 147 (201)
T ss_dssp SSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSC
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 3556677777787788899999999888778899999999887653
No 202
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=66.94 E-value=16 Score=28.77 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=42.3
Q ss_pred HhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCC
Q psy8397 101 ARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEG 173 (203)
Q Consensus 101 ~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G 173 (203)
...+-.+|++|+- |.+......++..++.|..+|.+|......+.+++|.++.+..|
T Consensus 129 ~~~~DvvI~iS~S----------------G~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~g 185 (212)
T 2i2w_A 129 GREGDVLLGISTS----------------GNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHF 185 (212)
T ss_dssp CCTTCEEEEECSS----------------SCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECCC
T ss_pred CCCCCEEEEEECC----------------CCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCCC
Confidence 3456677777764 44566777777777888888888887766788999998887765
No 203
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=66.27 E-value=24 Score=27.16 Aligned_cols=58 Identities=7% Similarity=0.102 Sum_probs=44.5
Q ss_pred HhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh---cCEEEEEeCCe
Q psy8397 101 ARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM---VDHLYVIAEGH 174 (203)
Q Consensus 101 ~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~---~d~v~vl~~G~ 174 (203)
...+-.+|++|+- |.+..+...++..++.|..+|.+|......+.++ +|.++.+..+.
T Consensus 111 ~~~~DvvI~iS~S----------------G~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 111 GQPGDVLLAISTS----------------GNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp CCTTCEEEEECSS----------------SCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSC
T ss_pred CCCCCEEEEEeCC----------------CCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCc
Confidence 3456677777764 5566777888888888998888888877778899 99888776543
No 204
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=65.81 E-value=44 Score=29.52 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhcccc-CCC
Q psy8397 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGL-DSN 130 (203)
Q Consensus 53 ~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~-~~~ 130 (203)
+.|+..+.+++.-|...+...++++.|+| +++.. ++...++.+.++ +..+|++-.--. ...-.. ..+
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~--~~s~~---~i~~~~~~l~~~~~~~livID~l~~------~~~~~~~~~~ 334 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAGIYIDDTP--SIRVS---DIRAKCRRLKQESGLGMIVIDYLQL------IQGSGRSKEN 334 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSCEEEECCT--TCCHH---HHHHHHHHHHTTTCCCEEEEECGGG------SCCSCC----
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHH---HHHHHHHHHHHHcCCCEEEEccHHH------hccCCCCCCC
Confidence 57899999998888777777788887765 45543 344566666643 677777643210 000000 011
Q ss_pred chhH---HHHHHHHh-hhCCceEEEeec---------C--ch-------hHHHhhcCEEEEEeCCeE
Q psy8397 131 STNQ---CVAMLKAL-ARGGRTIVCTIH---------Q--PS-------ATIFEMVDHLYVIAEGHC 175 (203)
Q Consensus 131 ~~~~---~~~~~~~~-~~~g~tvi~~~h---------~--~~-------~~i~~~~d~v~vl~~G~i 175 (203)
...+ ....++.+ ++.+.+|++++| + |. ..+...||.|+++.+++.
T Consensus 335 ~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 335 RQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2223 33345555 456999999999 2 32 036778999999986643
No 205
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=65.33 E-value=16 Score=28.53 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
+|.+..+...++..++.|..+|.+|......+.+++|.++.+..+.
T Consensus 99 SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 99 SGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp SSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 4566777888887888899999999888777899999998877665
No 206
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=63.34 E-value=18 Score=30.75 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=39.3
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
||.+-.....++..++.|..+|.+|..+...+.+.+|.++.+..|.
T Consensus 84 SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 129 (329)
T 3eua_A 84 SGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGD 129 (329)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCST
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCC
Confidence 5667788888888888899999999988888999999999888764
No 207
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=63.14 E-value=23 Score=28.15 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=38.1
Q ss_pred CCchhHHHHHHHHhhh--CCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALAR--GGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~--~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
+|.+..+...++..++ .|..+|.+|......+.+++|.++.+..+.
T Consensus 116 SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~ 163 (220)
T 3etn_A 116 SGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPA 163 (220)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 5667778888888888 899999999887778899999998877654
No 208
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=62.13 E-value=22 Score=26.80 Aligned_cols=53 Identities=9% Similarity=0.121 Sum_probs=41.3
Q ss_pred CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeC
Q psy8397 103 GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAE 172 (203)
Q Consensus 103 ~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~ 172 (203)
++-.+|++|+- |.+......++..++.|..+|.+|..... +.+++|.++.+..
T Consensus 82 ~~d~vi~iS~s----------------G~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 82 KDDLLILISGS----------------GRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp TTCEEEEEESS----------------SCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECCC
T ss_pred CCCEEEEEeCC----------------CCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeCC
Confidence 46677888875 44566777778778889989999988877 8899998887764
No 209
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=61.99 E-value=25 Score=30.66 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=34.6
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC---H----------HHHHHHHHHHHHH---Hh-CCCeEEEEecCC
Q psy8397 61 KRLSIALELI--DNPPIMFLDEPTTGLD---S----------NSTNQCVAMLKAL---AR-GGRTIVCTIHQP 114 (203)
Q Consensus 61 qrl~iA~aL~--~~P~vLlLDEPt~gLD---~----------~~~~~i~~~l~~l---~~-~g~tvi~~tH~~ 114 (203)
+.+.+++.++ .+++++++|..++-.. . ...+.+.+.+++| .+ .+++||++.|--
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 4456666666 5799999999986441 0 1223455666665 34 488998888763
No 210
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=61.82 E-value=20 Score=30.75 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=39.7
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
||.+......++..++.|..+|.+|..+...+.+.+|.++.+..|.
T Consensus 100 SG~T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~g~ 145 (334)
T 3hba_A 100 SGRSPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLRAGE 145 (334)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeecCCC
Confidence 5778888888888888899999999988888999999999888775
No 211
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=61.09 E-value=4.9 Score=33.14 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=44.5
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
+|.+...|..-.++++ .+.+.+..+-.-+|+ =.|- =++|..+...+.+.++.+.++|.|||+++|+
T Consensus 147 ~~~~~~~LSgGqkQrv-~iAraL~~~p~lllL--DEPt---------s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 212 (257)
T 1g6h_A 147 YDRKAGELSGGQMKLV-EIGRALMTNPKMIVM--DEPI---------AGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212 (257)
T ss_dssp TTSBGGGSCHHHHHHH-HHHHHHHTCCSEEEE--ESTT---------TTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred hCCCchhCCHHHHHHH-HHHHHHHcCCCEEEE--eCCc---------cCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5788888888777764 455566644333332 1121 1346777788888888886679999999997
No 212
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=60.70 E-value=5 Score=33.31 Aligned_cols=66 Identities=15% Similarity=0.290 Sum_probs=43.1
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
+|.+...|.--.++++ .+.+.+..+-.-+|+ =.|. -++|..+...+.+.++.+.++|.|||++||+
T Consensus 132 ~~~~~~~LSgGq~qRv-~lAraL~~~p~lllL--DEPt---------s~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 132 KDRVPFFLSGGEKRRV-AIASVIVHEPDILIL--DEPL---------VGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp TTCCGGGSCHHHHHHH-HHHHHHTTCCSEEEE--ESTT---------TTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred ccCChhhCCHHHHHHH-HHHHHHHcCCCEEEE--cCcc---------ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4677778877766654 445556543332222 1111 1347778888888888886669999999997
No 213
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=60.55 E-value=26 Score=27.59 Aligned_cols=39 Identities=21% Similarity=0.474 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
+.+++++||--- +|+. .++.++.+...|..||++.++.+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMD 119 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccc
Confidence 579999999544 6654 35567777777899999998653
No 214
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=60.09 E-value=4.4 Score=33.24 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=38.4
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 78 LDEPTTG-LDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 78 LDEPt~g-LD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
+|.|... |..-.++++ .+.+.+..+-.-+|+= .|. -++|..+...+.+.++.+.+.|.|||++||+
T Consensus 136 ~~~~~~~~LSgGqkQrv-~iAraL~~~p~lllLD--EPt---------s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 136 LSRYLNEGFSGGEKKRN-EILQLLVLEPTYAVLD--ETD---------SGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp GGSBTTCC----HHHHH-HHHHHHHHCCSEEEEE--CGG---------GTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred hcCCcccCCCHHHHHHH-HHHHHHHcCCCEEEEe--CCC---------cCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4666555 777666654 4455565443333321 111 1346677778888888876679999999997
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=59.92 E-value=27 Score=31.34 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 63 LSIALELIDNPPIMFLDEPT-TG--LDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 63 l~iA~aL~~~P~vLlLDEPt-~g--LD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
-+++.+...+++++|+|+|- .+ .|+....++.++.+.+......+++.++.
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 34556666799999999997 45 88888888877766664444555555554
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=59.53 E-value=4.8 Score=34.09 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=26.9
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCeEEEEecCCC
Q psy8397 70 IDNPPIMFLDEPT-TGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 70 ~~~P~vLlLDEPt-~gLD~~~~~~i~~-~l~~l~~~g~tvi~~tH~~~ 115 (203)
+.++++|++||.- ..++...+..++. ++.....++..+|+||+...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~ 259 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSF 259 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCH
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCH
Confidence 4578999999983 2345444444544 66654445677888888653
No 217
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=58.66 E-value=7.6 Score=33.25 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CeEEEEec
Q psy8397 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG-RTIVCTIH 112 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tvi~~tH 112 (203)
+.+++++++..+++..+.+|++++|.-..+..|... ...+++++.+...| .||++.|.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 356788999999999999999887774334445433 45566677766555 57777776
No 218
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=58.33 E-value=6.4 Score=29.96 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=39.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCch---hhhhhhccccCCCchhHHHHHHH
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT---IFEMVDHLGLDSNSTNQCVAMLK 140 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 140 (203)
+|.+|++||.-. +++.....+.+.+.+. ..+..+|++|+..... +...+..+-+..-+..+..+.++
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~ 195 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLE 195 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHH
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHH
Confidence 578999999755 7777766666655432 2356788888775432 22223334444444455555554
No 219
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=55.83 E-value=24 Score=25.72 Aligned_cols=43 Identities=9% Similarity=0.221 Sum_probs=38.0
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 71 DNPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 71 ~~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.+|+.++|| ...+.+|......+.+..+++.+.|.+++++.-.
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 93 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVS 93 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCC
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 478899999 7889999999999999999999889999988644
No 220
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=55.80 E-value=24 Score=30.40 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=38.8
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCC
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEG 173 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G 173 (203)
||.+-.....++..++.|..+|.+|..+...+.+.+|.++.+..|
T Consensus 99 SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g 143 (347)
T 3fkj_A 99 QGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWA 143 (347)
T ss_dssp SSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence 566778888888778889999999998888899999999988877
No 221
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=55.69 E-value=16 Score=31.53 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
||.+-.....++..++.|..+|.+|..+...+.+.+|.++.+..|.
T Consensus 92 SG~T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~~~~g~ 137 (352)
T 3g68_A 92 GGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILTVNCGE 137 (352)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEEeCCCC
Confidence 5777888888888888899999999988888999999998887775
No 222
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=54.85 E-value=5.1 Score=33.32 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=41.0
Q ss_pred EeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 78 LDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|.|.. .|.--.++++ .+.+.+..+-.-+|+ =.|. -++|..+...+.+.++.+.++|+|||+++|
T Consensus 157 ~~~~~~~~LSgGq~QRv-~iAraL~~~p~lLlL--DEPt---------s~LD~~~~~~l~~~l~~l~~~g~tviivtH 222 (267)
T 2zu0_C 157 LTRSVNVGFSGGEKKRN-DILQMAVLEPELCIL--DESD---------SGLDIDALKVVADGVNSLRDGKRSFIIVTH 222 (267)
T ss_dssp TTSBTTTTCCHHHHHHH-HHHHHHHHCCSEEEE--ESTT---------TTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred hcCCcccCCCHHHHHHH-HHHHHHHhCCCEEEE--eCCC---------CCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 466665 4887766665 345556644333332 1111 134667777888888877667999999999
No 223
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=54.76 E-value=36 Score=24.73 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=37.6
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 72 NPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 72 ~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.++.++|| ...+.+|......+.+..+++.+.|..+.++.-.
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 105 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCS 105 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCC
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899999 7889999999999999999999999999988644
No 224
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=54.42 E-value=56 Score=23.32 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=38.7
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 71 DNPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 71 ~~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.+|+.++|| ...+.+|......+.+..+++.+.|.+++++.-.
T Consensus 47 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 90 (130)
T 4dgh_A 47 ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGAN 90 (130)
T ss_dssp SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 478999999 8899999999999999999999999999988654
No 225
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=53.85 E-value=28 Score=30.24 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=40.6
Q ss_pred CCCchhHHHHHHHHhhhCC-ceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 128 DSNSTNQCVAMLKALARGG-RTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~g-~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
-||.+-.....++..++.| ..+|.+|..+...+.+.+|.++.+..|.
T Consensus 110 ~SG~T~e~l~al~~ak~~G~a~~iaIT~~~~S~La~~aD~~l~~~~g~ 157 (372)
T 3tbf_A 110 QSGETADTLESLRKSKKQNYVGSMCICNVPNSSLVRESDIAFMTKAGV 157 (372)
T ss_dssp SSSCCHHHHHHHHHHTTTTEEEEEEEESSSSSHHHHHSSEEEECCCCC
T ss_pred CCCCCHHHHHHHHHHHHcCCceEEEEcCCCCChHHHhCCEeeeecCCc
Confidence 4677888888888888889 8999999988888999999999888775
No 226
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=52.54 E-value=16 Score=25.34 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=37.0
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 71 DNPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 71 ~~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
.+|+.+++| .....+|......+.+..+++.+.|.++.++.-
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 84 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGM 84 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 357889998 778999999999999999999999999988863
No 227
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=52.48 E-value=25 Score=29.96 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHHHh------CCCeEEEEecCC
Q psy8397 61 KRLSIALELIDNPPIMFLDEP-------TTGLDSNSTNQCVAMLKALAR------GGRTIVCTIHQP 114 (203)
Q Consensus 61 qrl~iA~aL~~~P~vLlLDEP-------t~gLD~~~~~~i~~~l~~l~~------~g~tvi~~tH~~ 114 (203)
.+-.+..+-...|.+||+||. ..+.+........+++..+.. .+..||.+|+.+
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 344455566678999999998 334444444444445554431 234567788764
No 228
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=52.26 E-value=7.1 Score=32.76 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=41.5
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhh-hCCceEEEeecC
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQ 155 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~tvi~~~h~ 155 (203)
+|.+...|.--.++++ .+.+.+..+-.-+|+ =.|. =++|..+...+.+.++.+. +.|.|||++||+
T Consensus 137 ~~~~~~~LSgGqkQRv-~iAraL~~~P~lLlL--DEPt---------s~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 137 KDKPTHCLSFGQKKRV-AIAGVLVMEPKVLIL--DEPT---------AGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp TTSBGGGSCHHHHHHH-HHHHHHTTCCSEEEE--ECTT---------TTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred hcCCcccCCHHHHHHH-HHHHHHHcCCCEEEE--ECcc---------ccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 4677777877666554 344555543333322 1111 1346677778888888775 569999999998
No 229
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=52.19 E-value=5.6 Score=30.28 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=41.9
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhh-hccc--c----CCCchhHHHHH
Q psy8397 66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV-DHLG--L----DSNSTNQCVAM 138 (203)
Q Consensus 66 A~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~-~~~~--~----~~~~~~~~~~~ 138 (203)
+..........++|.+. +.+..+++...+.+.+..+- -++.--.|...+.... .|+. + .......+...
T Consensus 66 ~~~~~~~g~~~~~~~~~--~~s~g~~qrv~iAral~~~p--~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~ 141 (171)
T 4gp7_A 66 VSKRLQLGKLTVVDATN--VQESARKPLIEMAKDYHCFP--VAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKS 141 (171)
T ss_dssp HHHHHHTTCCEEEESCC--CSHHHHHHHHHHHHHTTCEE--EEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCeEEEECCC--CCHHHHHHHHHHHHHcCCcE--EEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhh
Confidence 34444445556777663 44777777777766665321 1222122211110000 0000 0 00011233333
Q ss_pred HHHhhhCCceEEEeecCchh
Q psy8397 139 LKALARGGRTIVCTIHQPSA 158 (203)
Q Consensus 139 ~~~~~~~g~tvi~~~h~~~~ 158 (203)
++.+.++|.|+|+++|+++.
T Consensus 142 l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 142 IKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp STTHHHHTCSEEEEECSHHH
T ss_pred hhhHHhcCCcEEEEeCCHHH
Confidence 44445569999999999874
No 230
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=50.32 E-value=21 Score=31.05 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
||.+-.....++..++.|..+|.+|..+...+.+.+|.++.+..|.
T Consensus 107 SGeT~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~~~~g~ 152 (366)
T 3knz_A 107 GGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGE 152 (366)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCCCCC
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEecCCCc
Confidence 5777888888888888899999999988888999999988887774
No 231
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=49.84 E-value=9.3 Score=30.72 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=40.0
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|.+...|.--.++++ .+.+.+..+-.-+|+ =.|. -++|..+...+...++.+.++|.|||++||
T Consensus 134 ~~~~~~~LSgGq~qrv-~laral~~~p~lllL--DEPt---------~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 134 LSRKPYELSGGEQQRV-AIARALANEPILLFA--DEPT---------GNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp TTCCGGGSCHHHHHHH-HHHHHTTTCCSEEEE--ESTT---------TTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred hhCChhhCCHHHHHHH-HHHHHHHcCCCEEEE--eCCC---------CCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4667777777666653 344445433222222 1111 134677778888888888666999999999
No 232
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=49.28 E-value=14 Score=29.76 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---h-CCCeEEEEecCCC
Q psy8397 63 LSIALELIDNPPIMFLDEPTTG----------LDSNSTNQCVAMLKALA---R-GGRTIVCTIHQPS 115 (203)
Q Consensus 63 l~iA~aL~~~P~vLlLDEPt~g----------LD~~~~~~i~~~l~~l~---~-~g~tvi~~tH~~~ 115 (203)
-.+..+....|.+||+||--.- -+......+...+..+. . .+..||.+|+.++
T Consensus 101 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 3445566678899999997431 35666777777777764 2 2456788887653
No 233
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=49.28 E-value=41 Score=28.93 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=38.5
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
||.+-.....++..++.|..+|.+|..+...+.+.+|.++.+..|.
T Consensus 107 SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 152 (367)
T 2poc_A 107 SGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGP 152 (367)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcCCCC
Confidence 5777788888888888898889999888778999999988887664
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=48.22 E-value=12 Score=34.70 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHh-cCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEec
Q psy8397 59 QKKRLSIALELI-DNPP-IMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIH 112 (203)
Q Consensus 59 qrqrl~iA~aL~-~~P~-vLlLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH 112 (203)
.+|++.+++++. ..|. +||...||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 397 L~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 397 LKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 357788888664 4564 55555588876543 34555554 3889999999
No 235
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=47.87 E-value=51 Score=28.15 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCC
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEG 173 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G 173 (203)
||.+-.....++..++.|..+|.+|......+.+.+|.++.+..+
T Consensus 112 SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~ 156 (355)
T 2a3n_A 112 SGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHK 156 (355)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCS
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeCCC
Confidence 466777778888778889888888988877899999998877644
No 236
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=47.32 E-value=47 Score=28.68 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=38.2
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
||.+-.....++..++.|..+|.+|..+...+.+.+|.++.+..|.
T Consensus 117 SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 162 (375)
T 2zj3_A 117 SGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGP 162 (375)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeecCCc
Confidence 5667788888888888898889999888778999999988887664
No 237
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=47.15 E-value=44 Score=28.66 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=38.2
Q ss_pred CCchhHHHHHHHHhhhCC-ceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 129 SNSTNQCVAMLKALARGG-RTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g-~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
||.+-.....++..++.| ..+|.+|......+.+.+|.++.+..|.
T Consensus 109 SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~ 155 (368)
T 1moq_A 109 SGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGT 155 (368)
T ss_dssp SSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCC
Confidence 567778888888888888 8888888887778999999988888765
No 238
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=46.37 E-value=4.3 Score=35.51 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=29.0
Q ss_pred cCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeC
Q psy8397 127 LDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAE 172 (203)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~ 172 (203)
+++-...+....+......|.+|++++|+.+. ...+||++.|..
T Consensus 202 lDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~ 245 (356)
T 3jvv_A 202 VGEMRDLETIRLALTAAETGHLVFGTLHTTSA--AKTIDRVVDVFP 245 (356)
T ss_dssp ESCCCSHHHHHHHHHHHHTTCEEEEEESCSSH--HHHHHHHHHTSC
T ss_pred cCCCCCHHHHHHHHHHHhcCCEEEEEEccChH--HHHHHHHhhhcC
Confidence 35555444444433345669999999999874 367888776644
No 239
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=46.22 E-value=25 Score=29.11 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHh-CCCeEEEEecCCC
Q psy8397 63 LSIALELIDNPPIMFLDEPTT-------------GLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPS 115 (203)
Q Consensus 63 l~iA~aL~~~P~vLlLDEPt~-------------gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~~~ 115 (203)
-.+..+....|.++|+||--+ +........++..+..+.. .+..||.+|+.++
T Consensus 99 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 345556667899999999642 2223333444444443322 2567888998763
No 240
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=46.11 E-value=14 Score=30.99 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=32.4
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCC--------HHHH----HHHHHHHHHHHh-CCCeEEEEecC
Q psy8397 61 KRLSIALELI---DNPPIMFLDEPTTGLD--------SNST----NQCVAMLKALAR-GGRTIVCTIHQ 113 (203)
Q Consensus 61 qrl~iA~aL~---~~P~vLlLDEPt~gLD--------~~~~----~~i~~~l~~l~~-~g~tvi~~tH~ 113 (203)
+-+..+..++ .+|+++++|.-++-.. ...+ .++...|+.+++ .+.+||++.|-
T Consensus 190 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 190 LFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp HHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 3444455555 4689999998875321 1222 344455555554 48899998775
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.83 E-value=11 Score=30.57 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=43.5
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|.+...|..-.++++ .+.+.+..+-.-+|+ =.|. -++|..+...+.+.++.+.+.|.|||++||
T Consensus 133 ~~~~~~~LSgGq~qrv-~lAraL~~~p~lllL--DEPt---------s~LD~~~~~~l~~~l~~~~~~g~tvi~vtH 197 (240)
T 1ji0_A 133 LKQLGGTLSGGEQQML-AIGRALMSRPKLLMM--DEPS---------LGLAPILVSEVFEVIQKINQEGTTILLVEQ 197 (240)
T ss_dssp TTSBSSSSCHHHHHHH-HHHHHHTTCCSEEEE--ECTT---------TTCCHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hcCChhhCCHHHHHHH-HHHHHHHcCCCEEEE--cCCc---------ccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 4788888988777765 445556543333222 1111 134777788888888888667999999999
No 242
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=45.80 E-value=21 Score=25.49 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=37.3
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 71 DNPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 71 ~~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
.+|+.++|| ...+.+|......+.+..+++.+ |.+++++.-.
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~ 86 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVE 86 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCC
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCC
Confidence 568899999 78899999999999999999999 9999988654
No 243
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=44.95 E-value=48 Score=27.84 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 103 GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 103 ~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
.+-.+|++|+ +|.+-.+...++..++.|..+|.+|..+...+.+++|.++.+..|.
T Consensus 140 ~~DvvI~IS~----------------SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~ 195 (306)
T 1nri_A 140 KNDVLVGIAA----------------SGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGP 195 (306)
T ss_dssp TTSEEEEECT----------------TSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCS
T ss_pred CCCEEEEEEC----------------CCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCC
Confidence 4667777776 4667778888888888899999999888778999999988876553
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=44.13 E-value=12 Score=31.01 Aligned_cols=65 Identities=20% Similarity=0.364 Sum_probs=40.6
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|.+...|.--.++++. +.+.+..+-.-+|+ =.|. -++|..+...+...++.+.++|.|||++||
T Consensus 147 ~~~~~~~LSgGq~qRv~-lAraL~~~p~lllL--DEPt---------s~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 211 (262)
T 1b0u_A 147 QGKYPVHLSGGQQQRVS-IARALAMEPDVLLF--DEPT---------SALDPELVGEVLRIMQQLAEEGKTMVVVTH 211 (262)
T ss_dssp HTSCGGGSCHHHHHHHH-HHHHHHTCCSEEEE--ESTT---------TTSCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred hcCCcccCCHHHHHHHH-HHHHHhcCCCEEEE--eCCC---------ccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 46677777776665543 44455543222222 1111 134677778888888888666999999999
No 245
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=44.04 E-value=48 Score=24.04 Aligned_cols=42 Identities=5% Similarity=0.131 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+..+|++||.- .+++..+..+++.+.+....+..+|++|...
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 56899999964 6788888888888777544456777777653
No 246
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=43.52 E-value=72 Score=21.42 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.9
Q ss_pred CCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEec
Q psy8397 73 PPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112 (203)
Q Consensus 73 P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH 112 (203)
++.+++| .-...+|......+....+.+.+.|..+.++.-
T Consensus 44 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 84 (110)
T 1sbo_A 44 KKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSL 84 (110)
T ss_dssp CSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 3778899 788899999999999999999988999888754
No 247
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=43.52 E-value=62 Score=23.04 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=35.4
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEe
Q psy8397 72 NPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111 (203)
Q Consensus 72 ~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~t 111 (203)
+++.+++| .-.+.+|......+....+.+.+.|..+.++.
T Consensus 51 ~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~ 91 (125)
T 2ka5_A 51 GYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVS 91 (125)
T ss_dssp TCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 47888999 78899999999999999999988888888875
No 248
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=43.42 E-value=13 Score=30.53 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=41.7
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCC------eEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEE
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGR------TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVC 151 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~------tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~ 151 (203)
+|.+...|.--.++++. +.+.+..+-. -+++- =.|. -++|..+...+.+.++.+.++|.|||+
T Consensus 120 ~~~~~~~LSgGq~qrv~-lAraL~~~p~~~~~~~~lllL-DEPt---------s~LD~~~~~~l~~~l~~l~~~g~tvii 188 (249)
T 2qi9_C 120 LGRSTNQLSGGEWQRVR-LAAVVLQITPQANPAGQLLLL-DEPM---------NSLDVAQQSALDKILSALSQQGLAIVM 188 (249)
T ss_dssp TTSBGGGCCHHHHHHHH-HHHHHHHHCTTTCTTCCEEEE-SSTT---------TTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hcCChhhCCHHHHHHHH-HHHHHHcCCCcCCCCCeEEEE-ECCc---------ccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 47778888887777653 3344443222 12221 1111 134777788888888888666999999
Q ss_pred eec
Q psy8397 152 TIH 154 (203)
Q Consensus 152 ~~h 154 (203)
++|
T Consensus 189 vtH 191 (249)
T 2qi9_C 189 SSH 191 (249)
T ss_dssp ECS
T ss_pred EeC
Confidence 999
No 249
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=43.32 E-value=13 Score=30.35 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=42.0
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
++++...|.--.++++ .+.+.+..+-.-+|+ =.|. -++|..+...+.+.++.+. .|+|||+++|+
T Consensus 139 ~~~~~~~LSgGq~qRv-~iAraL~~~p~lllL--DEPt---------s~LD~~~~~~i~~~l~~~~-~g~tviivtH~ 203 (247)
T 2ff7_A 139 VGEQGAGLSGGQRQRI-AIARALVNNPKILIF--DEAT---------SALDYESEHVIMRNMHKIC-KGRTVIIIAHR 203 (247)
T ss_dssp CSTTTTCCCHHHHHHH-HHHHHHTTCCSEEEE--CCCC---------SCCCHHHHHHHHHHHHHHH-TTSEEEEECSS
T ss_pred hhCCCCCCCHHHHHHH-HHHHHHhcCCCEEEE--eCCc---------ccCCHHHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 5777788887766654 345555544333332 1111 1346777778888888774 58999999997
No 250
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=43.26 E-value=14 Score=30.50 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=41.5
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|.+...|.--.++++ .+.+.+..+-.-+|+= .|. -++|..+...+.+.++.+.+.|.|||++||
T Consensus 140 ~~~~~~~LSgGq~qRv-~lAraL~~~p~lllLD--EPt---------s~LD~~~~~~l~~~l~~l~~~g~tiiivtH 204 (256)
T 1vpl_A 140 IKDRVSTYSKGMVRKL-LIARALMVNPRLAILD--EPT---------SGLDVLNAREVRKILKQASQEGLTILVSSH 204 (256)
T ss_dssp GGSBGGGCCHHHHHHH-HHHHHHTTCCSEEEEE--STT---------TTCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred hcCChhhCCHHHHHHH-HHHHHHHcCCCEEEEe--CCc---------cccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4677777877666654 3445555433322221 111 134677778888888888767999999999
No 251
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=43.19 E-value=43 Score=28.92 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=43.3
Q ss_pred CCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhC-CceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 103 GGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 103 ~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
.+..+|++|+ ||.+-.....++..++. |..+|.+|......+.+.+|.++.+..|.
T Consensus 97 ~~dlvI~iS~----------------SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~~ 153 (373)
T 2aml_A 97 HLDLVIGISQ----------------SGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGK 153 (373)
T ss_dssp TCCEEEEECS----------------SSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECSCCC
T ss_pred CCCEEEEEcC----------------CCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecCCCc
Confidence 4566777776 46667777888877777 88888888887777899999988887664
No 252
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=43.09 E-value=49 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
+.+++++||--- +|+. .++.++.++..|..||++.++.+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQD 139 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccc
Confidence 578999999866 6643 23667777767899999999544
No 253
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=42.18 E-value=30 Score=28.67 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=36.1
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHHHH----hCCCeEEEEecCCC---c---hhhhhh--hccccCCCchhHHHHH
Q psy8397 72 NPPIMFLDEPTTGLDSN-STNQCVAMLKALA----RGGRTIVCTIHQPS---A---TIFEMV--DHLGLDSNSTNQCVAM 138 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~-~~~~i~~~l~~l~----~~g~tvi~~tH~~~---~---~~~~~~--~~~~~~~~~~~~~~~~ 138 (203)
+|.+|++||.-.-.+.. ....+..+++... ..+..+|++|+.+. . .+...+ ..+-+...+..+....
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~i 209 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDI 209 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 46699999986433221 3344444444433 33678999998763 1 122222 2344444555555555
Q ss_pred HHH
Q psy8397 139 LKA 141 (203)
Q Consensus 139 ~~~ 141 (203)
++.
T Consensus 210 l~~ 212 (387)
T 2v1u_A 210 LET 212 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 254
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=41.90 E-value=14 Score=30.61 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=41.1
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h 154 (203)
+|.+...|.--.++++. +.+.+..+-.-+|+ =.|. -++|..+..++.+.++.+.++|.|||++||
T Consensus 153 ~~~~~~~LSgGqkQRv~-lAraL~~~p~lllL--DEPt---------s~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 217 (263)
T 2olj_A 153 AHAYPDSLSGGQAQRVA-IARALAMEPKIMLF--DEPT---------SALDPEMVGEVLSVMKQLANEGMTMVVVTH 217 (263)
T ss_dssp TTSCGGGSCHHHHHHHH-HHHHHTTCCSEEEE--ESTT---------TTSCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred hcCChhhCCHHHHHHHH-HHHHHHCCCCEEEE--eCCc---------ccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 46777777776666543 44455533222222 1111 134777788888888888666999999999
No 255
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=41.88 E-value=90 Score=28.40 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=61.6
Q ss_pred hcCCCEEEEeCCCCCCC---------HHHHH-----------HHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcccc--
Q psy8397 70 IDNPPIMFLDEPTTGLD---------SNSTN-----------QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL-- 127 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD---------~~~~~-----------~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~-- 127 (203)
+.+|+|+++|-|...-- ..+.. .+.+.++++.+.|..+|++.-..+.++.+.+.+.++
T Consensus 219 ~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~a 298 (513)
T 3iyg_B 219 IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMA 298 (513)
T ss_pred ecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceE
Confidence 57999999998643211 11222 233467778888999999999988888887776666
Q ss_pred CCCchhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEE
Q psy8397 128 DSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLY 168 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~ 168 (203)
...... ..|+.+.. -|.+++....++.....-.|+++.
T Consensus 299 v~~~~~---~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~ 337 (513)
T 3iyg_B 299 IEHADF---VGVERLALVTGGEIASTFDHPELVKLGSCKLIE 337 (513)
T ss_pred EecCCH---HHHHHHHHHhCCEEecccccCCHhHCCcccEEE
Confidence 222222 35665533 467777766666544455677665
No 256
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=41.70 E-value=14 Score=30.50 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=42.8
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 77 FLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 77 lLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
.++++...|.--.++++ .+.+.+..+-.-+|+= .|. =++|..+...+.+.++.+.+ |+|||+++|+
T Consensus 148 ~~~~~~~~LSgGqkqRv-~lAraL~~~p~lllLD--EPt---------s~LD~~~~~~i~~~l~~l~~-~~tviivtH~ 213 (260)
T 2ghi_A 148 IVGNKGMKLSGGERQRI-AIARCLLKDPKIVIFD--EAT---------SSLDSKTEYLFQKAVEDLRK-NRTLIIIAHR 213 (260)
T ss_dssp EESSSSBCCCHHHHHHH-HHHHHHHHCCSEEEEE--CCC---------CTTCHHHHHHHHHHHHHHTT-TSEEEEECSS
T ss_pred cccCCcCcCCHHHHHHH-HHHHHHHcCCCEEEEE--Ccc---------ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 35778788887766665 4556666543333331 111 13466677777888887754 8999999997
No 257
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=41.03 E-value=77 Score=28.88 Aligned_cols=101 Identities=13% Similarity=0.071 Sum_probs=62.7
Q ss_pred HhcCCCEEEEeCCCCC----------C-CHHHH--------HHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCC
Q psy8397 69 LIDNPPIMFLDEPTTG----------L-DSNST--------NQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDS 129 (203)
Q Consensus 69 L~~~P~vLlLDEPt~g----------L-D~~~~--------~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~ 129 (203)
-+.+|+|+++|-|... + ++... +.+.+.++++.+.|..+|++.-..++...+.+..=++.-
T Consensus 222 ~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~ 301 (515)
T 3iyg_H 222 KYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFC 301 (515)
T ss_pred cccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcc
Confidence 3679999999987431 1 11222 234667888888899999998777665666665544432
Q ss_pred CchhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEEEE
Q psy8397 130 NSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLYVI 170 (203)
Q Consensus 130 ~~~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~vl 170 (203)
. ...-...|+-+.. -|.+++....++.....-.|+++.+-
T Consensus 302 v-~~~~k~~leria~~tGa~ii~~l~~~~~~~LG~a~~v~~~ 342 (515)
T 3iyg_H 302 A-GRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEET 342 (515)
T ss_pred c-ccccHHHHHHHHHHhCCEEeeccccCCHHHCCcccEEEEE
Confidence 2 2223455665533 47777777776665445567776654
No 258
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=40.70 E-value=1.9e+02 Score=25.52 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=51.7
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCCchhhhhhhccccCCCchhHHHH---HHHHh
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVA---MLKAL 142 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 142 (203)
.+++.+.++.+.|+|. .++ ...+...++.+.++ |..+|++-+--. ...-.=.++...++.. .|+.+
T Consensus 320 ~~~~~~~~l~i~~~~~-~~~---~~~i~~~i~~~~~~~~~~lvVID~l~~------l~~~~~~~~~~~~~~~~~~~Lk~l 389 (503)
T 1q57_A 320 DELFGNDTFHLYDSFA-EAE---TDRLLAKLAYMRSGLGCDVIILDHISI------VVSASGESDERKMIDNLMTKLKGF 389 (503)
T ss_dssp HHHHTTTCEEEECCC----C---HHHHHHHHHHHHHTTCCSEEEEECTTC------CCSCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCEEEECCCC-CCC---HHHHHHHHHHHHHhcCCCEEEEccchh------cCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444566688877762 233 34566666666554 777777765311 0000000112233333 44444
Q ss_pred -hhCCceEEEeecCch---------------------hHHHhhcCEEEEEe
Q psy8397 143 -ARGGRTIVCTIHQPS---------------------ATIFEMVDHLYVIA 171 (203)
Q Consensus 143 -~~~g~tvi~~~h~~~---------------------~~i~~~~d~v~vl~ 171 (203)
++.+.+|++++|... ..+...+|-|+.+.
T Consensus 390 ak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 390 AKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp HHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEE
T ss_pred HHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEE
Confidence 556999999988642 12456799999885
No 259
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=40.65 E-value=28 Score=29.04 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--eEEEEecCCCchhhhhhhcc
Q psy8397 55 LSGGQKKRLSIALELI--DNPPIMFLDEPTTGLDSNS-TNQCVAMLKALARG-GR--TIVCTIHQPSATIFEMVDHL 125 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~--~~P~vLlLDEPt~gLD~~~-~~~i~~~l~~l~~~-g~--tvi~~tH~~~~~~~~~~~~~ 125 (203)
+|+|++ .+++.+. ..|.++++ +.+|... +..+.+.+.++.+. |. .+.+++|.-. -+.++++.|
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 899987 4556665 78999998 8899877 67788888888764 54 5555666543 244444444
No 260
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=40.47 E-value=34 Score=25.42 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=41.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc---hhhhhhhccccCCCchhHHHHHHHHh
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA---TIFEMVDHLGLDSNSTNQCVAMLKAL 142 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (203)
.++.++++||. ..+++.....+.+.+... ..+..+|++|..... .+...+..+-+..-+..+....++..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHH
Confidence 56889999995 456776666666666552 235567777766432 23333444445555556666666543
No 261
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=40.13 E-value=89 Score=27.49 Aligned_cols=55 Identities=7% Similarity=0.084 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcC-----CcccccccCCCCCH----HHHHHH--HHHH---HHh--cCCCEEEEeCCCCCCC
Q psy8397 32 IGLVDDILDTIG-----LVLSKHTLCGRLSG----GQKKRL--SIAL---ELI--DNPPIMFLDEPTTGLD 86 (203)
Q Consensus 32 ~~~v~~~L~~~~-----L~~~~~~~v~~LSg----Gqrqrl--~iA~---aL~--~~P~vLlLDEPt~gLD 86 (203)
..++.+.+...+ +.........++|| |+||+. .+.+ .++ .+-.+++.-..++..|
T Consensus 262 l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~ 332 (400)
T 3lda_A 262 LDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVD 332 (400)
T ss_dssp HHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCC
Confidence 344445555443 23333334456775 777763 2222 333 2566788777655444
No 262
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=39.45 E-value=11 Score=31.65 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=41.7
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceE--EEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI--VCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tv--i~~~h 154 (203)
+|.+...|.--.++++ .+.+.+..+-.-+|+ =.|. =++|..+...+.+.++.+.++|.|| |++||
T Consensus 155 ~~~~~~~LSgGqkqRv-~lAraL~~~p~lLlL--DEPt---------s~LD~~~~~~l~~~l~~l~~~g~tv~~iivtH 221 (279)
T 2ihy_A 155 AQQYIGYLSTGEKQRV-MIARALMGQPQVLIL--DEPA---------AGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221 (279)
T ss_dssp TTSBGGGSCHHHHHHH-HHHHHHHTCCSEEEE--ESTT---------TTCCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred hcCChhhCCHHHHHHH-HHHHHHhCCCCEEEE--eCCc---------cccCHHHHHHHHHHHHHHHHCCCEEEEEEEec
Confidence 4677778887776664 445556543332222 1111 1346777788888888876558999 99999
No 263
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=39.34 E-value=39 Score=26.59 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 55 LSGGQKKRLSIALELIDNPPIMFLDEPTT-GLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~~~P~vLlLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
.+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.....+-.+++++
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 3556655543 33588999999999976 677665544444443333222344444
No 264
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=38.93 E-value=18 Score=29.64 Aligned_cols=65 Identities=23% Similarity=0.329 Sum_probs=42.3
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhC-CceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARG-GRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~tvi~~~h 154 (203)
+|.+...|..-.++++ .+.+.+..+-.-+|+ =.|. -++|..+...+.+.++.+.++ |.|||+++|
T Consensus 122 ~~~~~~~LSgGq~qrv-~lAraL~~~p~lllL--DEPt---------s~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 122 AKREFTSLSGGQRQLI-LIARAIASECKLILL--DEPT---------SALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp TTSBGGGSCHHHHHHH-HHHHHHHTTCSEEEE--SSSS---------TTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred hcCChhhCCHHHHHHH-HHHHHHHcCCCEEEE--eCCc---------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4777888888777765 445556543332222 1111 134667778888888888665 999999999
No 265
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=38.62 E-value=65 Score=31.75 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchhHHHhh
Q psy8397 84 GLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM 163 (203)
Q Consensus 84 gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~ 163 (203)
.++...+..+.+.+.++.++|.+++...+...+.=+..+.-+++..-.+..+.+.++.+++.|..++++|.|-...+..+
T Consensus 489 ~~~~~~~~~~~~~~~~~a~~G~RvL~vA~~~~e~~l~~lGli~i~Dp~R~ea~~aI~~l~~aGI~v~MiTGD~~~TA~aI 568 (920)
T 1mhs_A 489 PIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARET 568 (920)
T ss_dssp CCCHHHHHHHHHHHHHHHTSSCCCCEECCCSSSCSCCCCBBCCCCCCCCHHHHHHHHHHHHHTCEEEEEESSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccccccEEEEEEEEeccccccHHHHHHHHhhcCceEEEEcCCCHHHHHHH
Confidence 36666677788888899999998888886532111234555667778889999999999999999999999988766666
Q ss_pred cCEE
Q psy8397 164 VDHL 167 (203)
Q Consensus 164 ~d~v 167 (203)
+.++
T Consensus 569 A~~l 572 (920)
T 1mhs_A 569 SRQL 572 (920)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6554
No 266
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=38.05 E-value=14 Score=29.39 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=17.2
Q ss_pred chhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 131 STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
+...+.+.++.+ ..|.||| ++|+++. +++....++|.
T Consensus 135 ~~~~l~~~l~~l-~~g~tii-vtHd~~~-----~~~~~~~~~G~ 171 (208)
T 3b85_A 135 TPAQMKMFLTRL-GFGSKMV-VTGDITQ-----VDLPGGQKSGL 171 (208)
T ss_dssp CHHHHHHHHTTB-CTTCEEE-EEEC-----------------CC
T ss_pred cHHHHHHHHHHh-cCCCEEE-EECCHHH-----HhCcCCCCCcH
Confidence 445555555555 4689999 9999863 33344455665
No 267
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=37.77 E-value=72 Score=28.40 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 61 KRLSIALELI--DNPPIMFLDEPTTGLD--------SNSTNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 61 qrl~iA~aL~--~~P~vLlLDEPt~gLD--------~~~~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
+.+..++.+. .+|+++++|=-+. +. ......+...|+.++++ |.+||+++|--
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 3344444443 5799999994432 21 12234566677777765 99999999964
No 268
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=37.47 E-value=29 Score=24.94 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=37.6
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 72 NPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 72 ~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+++.++|| .-.+.+|......+.+..+++.+.|..++++.-.+
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 90 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQ 90 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSS
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 57889999 77889999999999999999998899998887543
No 269
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=36.32 E-value=52 Score=26.23 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=41.3
Q ss_pred hCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecCchh-----------HHHhhcCEEEEE
Q psy8397 102 RGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA-----------TIFEMVDHLYVI 170 (203)
Q Consensus 102 ~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~-----------~i~~~~d~v~vl 170 (203)
..+-.+|++|+- |.+..+...++..++.|..+|.+|..... .+.+++|.++..
T Consensus 107 ~~~Dv~I~iS~S----------------G~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~~ 170 (243)
T 3cvj_A 107 TNKDVIMIISNS----------------GRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDN 170 (243)
T ss_dssp CTTCEEEEECSS----------------CCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEEC
T ss_pred CCCCEEEEEeCC----------------CCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEEC
Confidence 346677888874 55667777788778889988888887554 578899988876
Q ss_pred eCC
Q psy8397 171 AEG 173 (203)
Q Consensus 171 ~~G 173 (203)
..+
T Consensus 171 ~~~ 173 (243)
T 3cvj_A 171 GAP 173 (243)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 270
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=35.93 E-value=71 Score=24.81 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=58.9
Q ss_pred hcCCCEEEEeCCCCCCCH-------------------HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCC
Q psy8397 70 IDNPPIMFLDEPTTGLDS-------------------NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~-------------------~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~ 130 (203)
+.+|+|++||=|..---+ ...+.+.+.++++...|..||++.--.+..+.+.+.+=+|.--
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~v 104 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAI 104 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcccHHHHHHHHHCCCEEE
Confidence 379999999977542111 1233456677778778999999998877777777666665221
Q ss_pred chhHHHHHHHHh-hhCCceEEEeecCchhHHHhh-cCEEEEE
Q psy8397 131 STNQCVAMLKAL-ARGGRTIVCTIHQPSATIFEM-VDHLYVI 170 (203)
Q Consensus 131 ~~~~~~~~~~~~-~~~g~tvi~~~h~~~~~i~~~-~d~v~vl 170 (203)
.. .-...|+.+ ..-|.+++....++...-.-. |+.+...
T Consensus 105 r~-v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~ 145 (178)
T 1gml_A 105 RR-VRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIK 145 (178)
T ss_dssp CC-CCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEE
T ss_pred ec-CCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEE
Confidence 11 122334433 223666666666555433345 6666543
No 271
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=34.79 E-value=1.1e+02 Score=26.78 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-----H----------HHHHHHHHHHHHH----HhCCCeEEEEecC
Q psy8397 57 GGQKKRLSIALEL--I--DNPPIMFLDEPTTGLD-----S----------NSTNQCVAMLKAL----ARGGRTIVCTIHQ 113 (203)
Q Consensus 57 gGqrqrl~iA~aL--~--~~P~vLlLDEPt~gLD-----~----------~~~~~i~~~l~~l----~~~g~tvi~~tH~ 113 (203)
-++++.+.++..+ + .+|+++++|--++=.. . ...+.+-..|++| .+.+.++|+|-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 4566657777776 3 4699999997665431 1 1233444555553 3569999999997
Q ss_pred C
Q psy8397 114 P 114 (203)
Q Consensus 114 ~ 114 (203)
.
T Consensus 172 ~ 172 (333)
T 3io5_A 172 Y 172 (333)
T ss_dssp -
T ss_pred e
Confidence 4
No 272
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=33.90 E-value=86 Score=24.43 Aligned_cols=52 Identities=10% Similarity=0.148 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397 64 SIALELIDNPPIMFLDEPTTGL-----------DSNSTNQCVAMLKALAR----GGRTIVCTIHQPS 115 (203)
Q Consensus 64 ~iA~aL~~~P~vLlLDEPt~gL-----------D~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~ 115 (203)
.+..+....|.+|++||.-.-. +......+..++..+.. .+..+|.+|..++
T Consensus 90 ~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 90 LFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 4455555679999999986432 23334445556665543 2446666776554
No 273
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=33.46 E-value=1.8e+02 Score=24.12 Aligned_cols=57 Identities=18% Similarity=0.064 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHh--cCCC--EEEEeCCCCCC------C-HHHHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397 55 LSGGQKKRLSIALELI--DNPP--IMFLDEPTTGL------D-SNSTNQCVAMLKALARG-GRTIVCTIHQ 113 (203)
Q Consensus 55 LSgGqrqrl~iA~aL~--~~P~--vLlLDEPt~gL------D-~~~~~~i~~~l~~l~~~-g~tvi~~tH~ 113 (203)
+|-.+ ..+.++.+. .+++ ++++|--+.=- + ......+...|+.++++ |.+||+++|-
T Consensus 162 ~~~~~--i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 162 QSVNY--IWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 230 (315)
T ss_dssp CBHHH--HHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCHHH--HHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 45443 333344444 3688 99999543211 1 12334566677777766 9999999995
No 274
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=33.45 E-value=32 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
+++++++||--. +++ .+.+.++.+...|..|+++.+..+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccc
Confidence 578999999753 543 356677777777999999998654
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=32.88 E-value=19 Score=29.31 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=40.8
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhh-CCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALAR-GGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~tvi~~~h 154 (203)
+|.+...|.--.++++ .+.+.+..+-.-+|+= .|. -++|..+...+.+.++.+.+ .|.|||++||
T Consensus 120 ~~~~~~~LSgGqkqRv-~lAral~~~p~lllLD--EPt---------s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtH 185 (240)
T 2onk_A 120 LDRKPARLSGGERQRV-ALARALVIQPRLLLLD--EPL---------SAVDLKTKGVLMEELRFVQREFDVPILHVTH 185 (240)
T ss_dssp TTCCGGGSCHHHHHHH-HHHHHHTTCCSSBEEE--STT---------SSCCHHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred hcCChhhCCHHHHHHH-HHHHHHHcCCCEEEEe--CCc---------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4777778887777665 3445555332222220 110 13467777888888888754 5999999999
No 276
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=32.80 E-value=1.3e+02 Score=27.24 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=61.3
Q ss_pred hcCCCEEEEeCCCCC--------CCHHHHHH-----------HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCC
Q psy8397 70 IDNPPIMFLDEPTTG--------LDSNSTNQ-----------CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130 (203)
Q Consensus 70 ~~~P~vLlLDEPt~g--------LD~~~~~~-----------i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~ 130 (203)
+.+|+|+++|-|... +-..+..+ +.+.++++.+.|.-||++.-..+..+.+.+.+-+|..-
T Consensus 221 ien~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av 300 (515)
T 3iyg_G 221 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAI 300 (515)
T ss_pred eeeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceee
Confidence 579999999987532 11112222 33344477777889999887777777777666555322
Q ss_pred chhHHHHHHHHhh-hCCceEEEeecCchhHHHhh-cCEEEEEeCC
Q psy8397 131 STNQCVAMLKALA-RGGRTIVCTIHQPSATIFEM-VDHLYVIAEG 173 (203)
Q Consensus 131 ~~~~~~~~~~~~~-~~g~tvi~~~h~~~~~i~~~-~d~v~vl~~G 173 (203)
...-...|+-+. .-|.+++....++...-.-. |+.+.+-..|
T Consensus 301 -~~~~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g 344 (515)
T 3iyg_G 301 -RRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIG 344 (515)
T ss_pred -ccCCHHHHHHHHHHhCCeeeccccccChhhcCCcccEEEEEEEC
Confidence 222345566553 34677777666665444445 7777655443
No 277
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=32.74 E-value=73 Score=29.89 Aligned_cols=44 Identities=7% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~ 116 (203)
.-..++-++++| |+.|+++... .+ ++.+...+..+|++.|.++.
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~-~~---~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTE-RA---WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHH-HH---HHHHHHTTCCEEEEEECGGG
T ss_pred HhhcCcEEEEEc-CCcccchhHH-HH---HHHHHHccCCEEEEecCCch
Confidence 345788899999 9999998766 23 33344468899999998753
No 278
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=32.00 E-value=64 Score=22.01 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=35.9
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 72 NPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 72 ~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
+++.+++| .....+|......+....+.+.+.|..+.++.-.
T Consensus 42 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 84 (116)
T 1th8_B 42 AIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVS 84 (116)
T ss_dssp CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 37888999 7778899999999999999999889888887643
No 279
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=31.64 E-value=52 Score=27.27 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=42.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC---chhhhhhhccccCCCchhHHHHHHHHh
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS---ATIFEMVDHLGLDSNSTNQCVAMLKAL 142 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (203)
.++.++++||. -.|+......+.+.+.+. ..+..+|++|+++. ..+...|..+-+..-+..+....++..
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI 190 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcC-CCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHH
Confidence 35689999995 456777766666665432 13456777887654 233444555555555666666666543
No 280
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=31.44 E-value=57 Score=25.60 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 82 TTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 82 t~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
..||++.....+.++++...++|..+.+++=+-+
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~sgyRs 63 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRS 63 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCC
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEEEECC
Confidence 4589999999999999999999999888876654
No 281
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=31.02 E-value=1.6e+02 Score=26.75 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=60.9
Q ss_pred cCCCEEEEeCCCCCC--------CHHHHH-----------HHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397 71 DNPPIMFLDEPTTGL--------DSNSTN-----------QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131 (203)
Q Consensus 71 ~~P~vLlLDEPt~gL--------D~~~~~-----------~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~ 131 (203)
.+|++++||-|..-. -..+.+ .+.+.++++.+.|..+|++.-+.+.++.+.+..=+|. +-
T Consensus 222 ~~~kIall~~~le~~k~~~~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~-~v 300 (515)
T 3iyg_E 222 EDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLP-AV 300 (515)
T ss_pred CCceEEEEcCccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCE-EE
Confidence 578999999885432 111222 2466778888889999999988877666655543331 11
Q ss_pred hhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEEE
Q psy8397 132 TNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLYV 169 (203)
Q Consensus 132 ~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~v 169 (203)
...-...|+.+.. -|.+++....++.....-.|+++.+
T Consensus 301 ~~v~k~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~ 339 (515)
T 3iyg_E 301 RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKE 339 (515)
T ss_pred eccCHHHHHHHHHHhCCEEecccccCCHHHCCcceEEEE
Confidence 2223566776633 4777777666665444456766665
No 282
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=29.92 E-value=34 Score=26.54 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhCCceEEEeecCchhHH---------Hhhc-CEEEEEe
Q psy8397 134 QCVAMLKALARGGRTIVCTIHQPSATI---------FEMV-DHLYVIA 171 (203)
Q Consensus 134 ~~~~~~~~~~~~g~tvi~~~h~~~~~i---------~~~~-d~v~vl~ 171 (203)
++...++.+++.|.||++++|++.. + ..+| |++++|+
T Consensus 160 ~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 160 VLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 3555566667789999999999874 4 5788 9999996
No 283
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=29.48 E-value=42 Score=32.35 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC------HHHHHHHHH----HHHHHHhC-CCeEEEEecCCC
Q psy8397 62 RLSIALELIDNPPIMFLDEPTTGLD------SNSTNQCVA----MLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 62 rl~iA~aL~~~P~vLlLDEPt~gLD------~~~~~~i~~----~l~~l~~~-g~tvi~~tH~~~ 115 (203)
+..+..+....|.++|+||.-..+. ......+.. .+..+... +..+|.+||+++
T Consensus 287 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~ 351 (806)
T 1ypw_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTT
T ss_pred HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCch
Confidence 4455666677899999999954442 122233333 33322222 568888998864
No 284
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=29.40 E-value=1.1e+02 Score=28.10 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCCchhHHHHHHHHhhhCC-ceEEEeecCchhHHHhhcCEEEEEeCCe
Q psy8397 128 DSNSTNQCVAMLKALARGG-RTIVCTIHQPSATIFEMVDHLYVIAEGH 174 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~g-~tvi~~~h~~~~~i~~~~d~v~vl~~G~ 174 (203)
-||.+-...+.++..++.| ..+|.+|..+...+.+.+|.++.+..|.
T Consensus 348 ~SG~T~e~l~a~~~ak~~G~a~~IaIT~~~~S~La~~ad~~l~~~~~~ 395 (608)
T 2bpl_A 348 QSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGT 395 (608)
T ss_dssp SSSCCHHHHHHHHHHHHTTCSEEEEEESSTTCHHHHHSSEEEECCCCC
T ss_pred CCcCCHHHHHHHHHHHHcCCCeEEEEECCCCCHHHHhcCEEEEecCCc
Confidence 4677788888888888889 8888888887778999999888777665
No 285
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=29.30 E-value=1.2e+02 Score=19.93 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
....+...++..|..- +...+.|+.-.-.+ --..|+++|+|--..+.|- ..+.+.+++.. .+..+|++
T Consensus 14 ~~~~l~~~l~~~g~~v-----v~~~~~~~~a~~~~---~~~~~dlil~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~ 81 (120)
T 1tmy_A 14 MRMMLKDIITKAGYEV-----AGEATNGREAVEKY---KELKPDIVTMDITMPEMNG---IDAIKEIMKID-PNAKIIVC 81 (120)
T ss_dssp HHHHHHHHHHHTTCEE-----EEEESSHHHHHHHH---HHHCCSEEEEECSCGGGCH---HHHHHHHHHHC-TTCCEEEE
T ss_pred HHHHHHHHHhhcCcEE-----EEEECCHHHHHHHH---HhcCCCEEEEeCCCCCCcH---HHHHHHHHhhC-CCCeEEEE
Confidence 3445666777666421 22233343322222 2357999999987766553 34445555432 24445555
Q ss_pred ecC
Q psy8397 111 IHQ 113 (203)
Q Consensus 111 tH~ 113 (203)
|..
T Consensus 82 s~~ 84 (120)
T 1tmy_A 82 SAM 84 (120)
T ss_dssp ECT
T ss_pred eCC
Confidence 544
No 286
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=28.81 E-value=2.5e+02 Score=23.24 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHHh-----CCCeEEEEecCCC
Q psy8397 64 SIALELIDNPPIMFLDEPTT-------GLDSNSTNQCVAMLKALAR-----GGRTIVCTIHQPS 115 (203)
Q Consensus 64 ~iA~aL~~~P~vLlLDEPt~-------gLD~~~~~~i~~~l~~l~~-----~g~tvi~~tH~~~ 115 (203)
.+..+-...|.+||+||--+ +......+.+-.++..+.. .+..||.+|..++
T Consensus 97 lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 97 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp HHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 34445567899999999743 2222233333445555431 2456666777653
No 287
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=28.69 E-value=0.38 Score=39.80 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy8397 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEP 81 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEP 81 (203)
+..|||||+|++.+++++..+|++ ||++
T Consensus 167 l~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 167 LVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 456899999999999999999987 5655
No 288
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=28.67 E-value=87 Score=27.21 Aligned_cols=57 Identities=11% Similarity=0.272 Sum_probs=30.1
Q ss_pred HHHHHHHH-HHHHHhcCCCEEEEeCCCCCCCHHH--------HHHHHHHHHHH----HhCCCeEEEEecCC
Q psy8397 57 GGQKKRLS-IALELIDNPPIMFLDEPTTGLDSNS--------TNQCVAMLKAL----ARGGRTIVCTIHQP 114 (203)
Q Consensus 57 gGqrqrl~-iA~aL~~~P~vLlLDEPt~gLD~~~--------~~~i~~~l~~l----~~~g~tvi~~tH~~ 114 (203)
.+..+.+. +...+...+ ++++||-.+=-.... .+.+.+.+.+| .+.|.|+|++++..
T Consensus 167 ~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 167 TDFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp CCHHHHHHHHHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred cCHHHHHHHHHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 33444444 444444444 999999765322111 12233333333 34599999998853
No 289
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.38 E-value=2.3e+02 Score=25.21 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397 61 KRLSIALELIDNPPIMFLDEPTT----------GLDSNSTNQCVAMLKALAR----GGRTIVCTIHQPS 115 (203)
Q Consensus 61 qrl~iA~aL~~~P~vLlLDEPt~----------gLD~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~ 115 (203)
-|-.+..|-...|-|+|+||--+ +-|......+..+|..+-. .+.-||.+|..++
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 45566777778999999999743 2344445556667777642 3567899998875
No 290
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=28.18 E-value=58 Score=23.67 Aligned_cols=76 Identities=18% Similarity=0.121 Sum_probs=44.1
Q ss_pred CHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q psy8397 24 SVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG 103 (203)
Q Consensus 24 ~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~ 103 (203)
=|+|.......+...|+..|..- +..-+.|+.-. ..+--..|+++|+|=-.-|.|-.. + ++.+++.
T Consensus 13 iVdD~~~~~~~l~~~L~~~G~~v-----~~~a~~g~eAl---~~~~~~~~DlvllDi~mP~~~G~e---l---~~~lr~~ 78 (123)
T 2lpm_A 13 VVEDESMIAMLIEDTLCELGHEV-----AATASRMQEAL---DIARKGQFDIAIIDVNLDGEPSYP---V---ADILAER 78 (123)
T ss_dssp EESSSTTTSHHHHHHHHHHCCCC-----CBCSCCHHHHH---HHHHHCCSSEEEECSSSSSCCSHH---H---HHHHHHT
T ss_pred EEeCCHHHHHHHHHHHHHCCCEE-----EEEECCHHHHH---HHHHhCCCCEEEEecCCCCCCHHH---H---HHHHHcC
Confidence 34444444556777888877531 23344555422 223347899999998887777532 3 3344445
Q ss_pred CCeEEEEecC
Q psy8397 104 GRTIVCTIHQ 113 (203)
Q Consensus 104 g~tvi~~tH~ 113 (203)
+.-||+.|=+
T Consensus 79 ~ipvI~lTa~ 88 (123)
T 2lpm_A 79 NVPFIFATGY 88 (123)
T ss_dssp CCSSCCBCTT
T ss_pred CCCEEEEecC
Confidence 6656665543
No 291
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=27.95 E-value=1.7e+02 Score=26.56 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=62.1
Q ss_pred cCCCEEEEeCCCCCCCHH--------HHHH-----------HHHHHHHHHhCCCeEEEEecCCCchhhhhhhcccc--CC
Q psy8397 71 DNPPIMFLDEPTTGLDSN--------STNQ-----------CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL--DS 129 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~--------~~~~-----------i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~--~~ 129 (203)
.+|++++||-|..-+.+. +.++ +.+.++++.+.|..+|++.-..+..+.+.+.+.++ ..
T Consensus 219 ~n~kI~ll~~~le~~~~e~k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~ 298 (512)
T 3iyg_Q 219 KDAKIAVYSCPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVR 298 (512)
T ss_pred ccCceEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEE
Confidence 579999999987433221 1122 33345577778999999988877777777776665 22
Q ss_pred CchhHHHHHHHHhh-hCCceEEEeecCchhHHHhhcCEEEEEeCC
Q psy8397 130 NSTNQCVAMLKALA-RGGRTIVCTIHQPSATIFEMVDHLYVIAEG 173 (203)
Q Consensus 130 ~~~~~~~~~~~~~~-~~g~tvi~~~h~~~~~i~~~~d~v~vl~~G 173 (203)
... ...|+-+. .-|.+++....++.....-.|+++.+-..|
T Consensus 299 ~~~---~~dle~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~~g 340 (512)
T 3iyg_Q 299 LNS---KWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVG 340 (512)
T ss_pred eCC---HHHHHHHHHHhCCEEecccccCCHHHCCcccEEEEEEeC
Confidence 222 12355452 346777776666654455578887766543
No 292
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=27.88 E-value=50 Score=24.21 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=25.2
Q ss_pred EEEEEeCCeEEeeCCcccchhHHHhcCCCCCCCCCCCC
Q psy8397 166 HLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203 (203)
Q Consensus 166 ~v~vl~~G~i~~~g~~~~~~~~~~~~g~~~p~~~~~~d 203 (203)
.++-+++|+|+..-..-+....++.+|+ |.--.|||
T Consensus 122 ~v~~~~dGkI~~~~~y~D~~~ll~QlGl--p~~w~pa~ 157 (158)
T 4h3u_A 122 TLLRTRGEEITSDQDYYSLSSVLAQSGL--PADWTPSD 157 (158)
T ss_dssp EEEEEETTEEEEEEEEECHHHHHHHHTC--CTTCCC--
T ss_pred EEEEEECCEEEEEEEEECHHHHHHHcCC--CCCCCCCC
Confidence 3556689999988777777788889995 44555654
No 293
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=27.87 E-value=1.5e+02 Score=20.88 Aligned_cols=73 Identities=4% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEe
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~ 152 (203)
|.++++ ++...||..+...+.+.+..+......||+=-.... .||+.|...+....+.+++.|..++++
T Consensus 19 ~~v~v~-~~~G~L~f~~a~~~~~~l~~~~~~~~~vvlDls~v~----------~iDssgl~~L~~~~~~~~~~g~~l~l~ 87 (130)
T 4dgh_A 19 RELAVY-ALEGPFFFAAAETFERVMGSIQETPQILILRLKWVP----------FMDITGIQTLEEMIQSFHKRGIKVLIS 87 (130)
T ss_dssp TTEEEE-ECCSSCCHHHHHHHHHHHHHSSSCCSEEEEECTTCC----------CCCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCEEEE-EEeeeEeehhHHHHHHHHHHhccCCCEEEEECCCCC----------cccHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 455555 467789999999999998765434556666444333 247778777777788888788877776
Q ss_pred ecCc
Q psy8397 153 IHQP 156 (203)
Q Consensus 153 ~h~~ 156 (203)
.-.+
T Consensus 88 ~~~~ 91 (130)
T 4dgh_A 88 GANS 91 (130)
T ss_dssp CCCH
T ss_pred cCCH
Confidence 5544
No 294
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=27.79 E-value=1.8e+02 Score=23.19 Aligned_cols=70 Identities=13% Similarity=0.182 Sum_probs=41.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCc---hhhhhhhccccCCCchhHHHHHHHHh
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA---TIFEMVDHLGLDSNSTNQCVAMLKAL 142 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (203)
.++.++++||. ..+++.....+.+.+.+. ..+..+|+++.++.. .+...|..+-+..-+..+....++..
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~ 181 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMF-SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 181 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhc-CCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHH
Confidence 46889999996 446666666666666542 234566777766432 23334444555555555666656544
No 295
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=27.72 E-value=30 Score=27.89 Aligned_cols=95 Identities=25% Similarity=0.294 Sum_probs=57.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC------CCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhh
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG------GRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA 143 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~------g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (203)
..+|+|+|=||..+|=|-...+++.+.|..|+.. |.-+-+++=.-+ .+- . ...-+.
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~La~~V~nqwpGvkLRVtegwde--------------~~h-h---~~~SLH 130 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTKGWDE--------------DGH-H---SEESLH 130 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEECCCS--------------SCC-S---CTTCGG
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHHHHHHHHhcCCceEEEeecccC--------------CCC-C---Cccccc
Confidence 4589999999999998888888888877776532 555655542211 000 0 111223
Q ss_pred hCCceEEEeecCchh---------HHHhhcCEEEEEeCCeEEeeCCcc
Q psy8397 144 RGGRTIVCTIHQPSA---------TIFEMVDHLYVIAEGHCVYKGSSA 182 (203)
Q Consensus 144 ~~g~tvi~~~h~~~~---------~i~~~~d~v~vl~~G~i~~~g~~~ 182 (203)
-+|+++=+++.+-.. .+..=||.|+.-..+.|-..-..+
T Consensus 131 yEGRAvDIttsdrd~~k~g~LarLAveAGFDwV~Y~sr~~IH~SVk~d 178 (187)
T 3k7i_B 131 YEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSE 178 (187)
T ss_dssp GGTCEEEEEETTCCGGGHHHHHHHHHHTTCSEEEEEETTEEEEECCCS
T ss_pred ccceeeEEEecccchhHHHHHHHHHHHcCCCEEEeccCCeEEEEeccc
Confidence 468888666543221 133468888877777775544433
No 296
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=27.46 E-value=1.6e+02 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=22.3
Q ss_pred cCCCchhHHHHHHHHhh-hCCceEEEeecCch
Q psy8397 127 LDSNSTNQCVAMLKALA-RGGRTIVCTIHQPS 157 (203)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-~~g~tvi~~~h~~~ 157 (203)
+|..+...+...++... ..|.|++++||+..
T Consensus 228 LDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 228 LDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp EETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred EcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 35555566777777664 45999999999864
No 297
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=26.17 E-value=1.4e+02 Score=19.49 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
....+...++..|.. +...+.|+.-.-.+ --..|+++|+|-...+.|. ..+.+.+++.. ....+|+.
T Consensus 13 ~~~~l~~~l~~~~~~------v~~~~~~~~a~~~~---~~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~ 79 (116)
T 3a10_A 13 IRELLKEELQEEGYE------IDTAENGEEALKKF---FSGNYDLVILDIEMPGISG---LEVAGEIRKKK-KDAKIILL 79 (116)
T ss_dssp HHHHHHHHHHHTTCE------EEEESSHHHHHHHH---HHSCCSEEEECSCCSSSCH---HHHHHHHHHHC-TTCCEEEE
T ss_pred HHHHHHHHHHHCCCE------EEEeCCHHHHHHHH---hcCCCCEEEEECCCCCCCH---HHHHHHHHccC-CCCeEEEE
Confidence 344566677765542 22333343322111 2367999999987777664 24455555433 23444444
Q ss_pred ec
Q psy8397 111 IH 112 (203)
Q Consensus 111 tH 112 (203)
|.
T Consensus 80 s~ 81 (116)
T 3a10_A 80 TA 81 (116)
T ss_dssp ES
T ss_pred EC
Confidence 43
No 298
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.00 E-value=1.3e+02 Score=27.25 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397 62 RLSIALELIDNPPIMFLDEPTT----------GLDSNSTNQCVAMLKALAR----GGRTIVCTIHQPS 115 (203)
Q Consensus 62 rl~iA~aL~~~P~vLlLDEPt~----------gLD~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~ 115 (203)
|-.+..|-...|-|+|+||--+ +-+....+.+..+|..+-. .+.-||.+|..++
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 5566667778899999999642 2244455666667776642 2567899998875
No 299
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.87 E-value=1.6e+02 Score=26.17 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397 62 RLSIALELIDNPPIMFLDEP----------TTGLDSNSTNQCVAMLKALAR----GGRTIVCTIHQPS 115 (203)
Q Consensus 62 rl~iA~aL~~~P~vLlLDEP----------t~gLD~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~ 115 (203)
|-.+..|-...|-|+|+||- .++-|....+.+..+|..+-. .|.-||.+|..++
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 34455666778999999996 234455555556666666642 3667899998875
No 300
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=25.63 E-value=34 Score=27.14 Aligned_cols=44 Identities=34% Similarity=0.419 Sum_probs=30.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh------CCCeEEEEecCC
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR------GGRTIVCTIHQP 114 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~------~g~tvi~~tH~~ 114 (203)
.+|+|+|-||-.+|-|-..-.++++.|..|+. .|..|.++|=+-
T Consensus 62 ~n~divFrDee~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~SGYR 111 (170)
T 3n1g_B 62 YNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTEGWD 111 (170)
T ss_dssp CCTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEESSC
T ss_pred CCCCcEEecccccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEeccc
Confidence 38999999999766555555556665555542 167788887553
No 301
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=25.63 E-value=1.4e+02 Score=21.19 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=35.0
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113 (203)
Q Consensus 69 L~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~ 113 (203)
|+.-+.-+++|-=.+-|++.+...+-++...|... +..|.++.|-
T Consensus 1 ~i~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ght 46 (118)
T 2hqs_H 1 MLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHA 46 (118)
T ss_dssp ---CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred CccccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 34567778888889999999988888887777765 6789999996
No 302
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=25.62 E-value=2.4e+02 Score=25.50 Aligned_cols=101 Identities=9% Similarity=0.139 Sum_probs=62.3
Q ss_pred hcCCCEEEEeCCCCCC-----------CHHH--------HHHHHHHHHHHHhCCCeEEEE-----ecCCCchhhhhhhcc
Q psy8397 70 IDNPPIMFLDEPTTGL-----------DSNS--------TNQCVAMLKALARGGRTIVCT-----IHQPSATIFEMVDHL 125 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gL-----------D~~~--------~~~i~~~l~~l~~~g~tvi~~-----tH~~~~~~~~~~~~~ 125 (203)
+.+|+++++|-|...- ++.. ++.+.+.++++.+.|..+|++ .-+.+.++.+.+..-
T Consensus 220 i~n~kIlll~~~Le~~k~~~~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~ 299 (518)
T 3iyg_D 220 VEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKM 299 (518)
T ss_pred ccCceEEEEEeeccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHc
Confidence 5899999999875321 1221 235677888888889999998 566666666655544
Q ss_pred cc--CCCchhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEEEEeCC
Q psy8397 126 GL--DSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLYVIAEG 173 (203)
Q Consensus 126 ~~--~~~~~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~vl~~G 173 (203)
+| ...... ..|+-+.. -|.+++....++.....-.|+++.+...|
T Consensus 300 ~I~av~~~~~---~~le~ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~~g 347 (518)
T 3iyg_D 300 KIMVVKDIER---EDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLN 347 (518)
T ss_pred CcEEEecCCH---HHHHHHHHHhCCEEecccccCCHHHCCcCcEEEEEEeC
Confidence 44 222222 34555533 46777776666654445567777765433
No 303
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=25.56 E-value=59 Score=30.01 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=59.0
Q ss_pred hcCCCEEEEeCCCCC----------C-CHHH--------HHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCC
Q psy8397 70 IDNPPIMFLDEPTTG----------L-DSNS--------TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130 (203)
Q Consensus 70 ~~~P~vLlLDEPt~g----------L-D~~~--------~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~ 130 (203)
+.+|+|+++|-|... + ++.. ++.+.+.++++.+.|..+|++.-..+..+.+.+.+=++..-
T Consensus 241 ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v 320 (553)
T 3ko1_A 241 LENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAV 320 (553)
T ss_dssp CBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEE
T ss_pred cccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhh
Confidence 679999999987432 1 2222 22356677888888999999998887777666654333111
Q ss_pred chhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEEEE
Q psy8397 131 STNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLYVI 170 (203)
Q Consensus 131 ~~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~vl 170 (203)
...-...|+.+.. -|.+++....++.....-.|+++.+-
T Consensus 321 -~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~ 360 (553)
T 3ko1_A 321 -RRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEER 360 (553)
T ss_dssp -CCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECC
T ss_pred -hhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHh
Confidence 1112445665533 36666655444433223356666543
No 304
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=25.41 E-value=46 Score=28.79 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=43.1
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhh-hCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA-RGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~tvi~~~h 154 (203)
+|-+...|.--.++++ .+.+.+..+-.-+|+= .|- =++|.....++...++.+. +.|.|+|++||
T Consensus 134 ~~~~~~~LSGGq~QRv-alAraL~~~P~lLLLD--EP~---------s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH 199 (353)
T 1oxx_K 134 LNHFPRELSGAQQQRV-ALARALVKDPSLLLLD--EPF---------SNLDARMRDSARALVKEVQSRLGVTLLVVSH 199 (353)
T ss_dssp TTSCGGGSCHHHHHHH-HHHHHHTTCCSEEEEE--STT---------TTSCGGGHHHHHHHHHHHHHHHCCEEEEEES
T ss_pred hcCChhhCCHHHHHHH-HHHHHHHhCCCEEEEE--CCc---------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4677778887777664 4556666443333331 111 1347788888889998884 45999999999
No 305
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=25.30 E-value=1.4e+02 Score=21.77 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=28.1
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 68 aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.|..+.+++++.+|...+.-.....+.+.+.... .+..+|++.+.+
T Consensus 72 slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~-~~~~lvi~~~kl 117 (140)
T 1jql_B 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNKL 117 (140)
T ss_dssp CTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCC-SSCCEEEECSSC
T ss_pred CCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCC-CCEEEEEEeCCc
Confidence 4567889999999987776555555555554322 244444444444
No 306
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=25.19 E-value=34 Score=28.30 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=42.1
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhh-hCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA-RGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~tvi~~~h 154 (203)
+|++...|.--.++++ .+.+.+..+-.-+|+ =.|. -++|..+...+...++.+. +.|+|||+++|
T Consensus 150 ~~~~~~~LSgGq~QRv-~lAraL~~~p~lllL--DEPt---------s~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 150 VGETGNQLSGGQRQAV-ALARALIRKPRLLIL--DNAT---------SALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp CCGGGTTSCHHHHHHH-HHHHHHTTCCSEEEE--ESTT---------TTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred hcCCcCCCCHHHHHHH-HHHHHHhcCCCEEEE--ECCc---------cCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 5788888888777665 445556544333332 1111 1346677778888888774 45899999999
No 307
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}
Probab=25.11 E-value=1.1e+02 Score=26.79 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=36.0
Q ss_pred CCCchhHHHHHHHHhhhC--CceEEEeecCchhHHHhhcCE-----EEEEeCC
Q psy8397 128 DSNSTNQCVAMLKALARG--GRTIVCTIHQPSATIFEMVDH-----LYVIAEG 173 (203)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~--g~tvi~~~h~~~~~i~~~~d~-----v~vl~~G 173 (203)
-||.+-...+.++..++. |..+|.+|..+...+.+.+|. ++.+..|
T Consensus 117 ~SGeT~e~l~al~~ak~~~~Ga~~iaIT~~~~S~La~~aD~~~~~~~i~~~~~ 169 (393)
T 3odp_A 117 RSGNSPESTAAVTLAEKIVDDISHLIITCNSEGKLALHAKRNYNSFLLLMPEE 169 (393)
T ss_dssp SSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHGGGSSSCEEEEECCGG
T ss_pred CCCCCHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHhcCCCceEEEEcCCc
Confidence 367788888888877776 899999999888889999992 4555544
No 308
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=25.08 E-value=48 Score=30.52 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=59.7
Q ss_pred hcCCCEEEEeCC-------------CCCCCH------HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCC
Q psy8397 70 IDNPPIMFLDEP-------------TTGLDS------NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130 (203)
Q Consensus 70 ~~~P~vLlLDEP-------------t~gLD~------~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~ 130 (203)
+.+|+|+++|-| -+..+. ...+.+.+.++++.+.|..+|++.-+.+.++.+.+..-+|..-
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av 310 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAV 310 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEE
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEe
Confidence 689999999998 232322 1233457788888888999999998888777666554444111
Q ss_pred chhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEEEE
Q psy8397 131 STNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLYVI 170 (203)
Q Consensus 131 ~~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~vl 170 (203)
...-+..|+-+.. -|.+++....++...-.-.|++|.+-
T Consensus 311 -~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~ 350 (545)
T 1a6d_A 311 -RRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEER 350 (545)
T ss_dssp -CSCCHHHHHHHHHHHCCCEESSGGGCCGGGCEEEEEEEEE
T ss_pred -ccCCHHHHHHHHHHhCCeeecccccCCHHHCCCceEEEEE
Confidence 1223455555522 35566654444433223345555543
No 309
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=25.05 E-value=1e+02 Score=26.06 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHhhhCCceEEEeecCchhHHHhhcCEEEEEeC
Q psy8397 129 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAE 172 (203)
Q Consensus 129 ~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~~i~~~~d~v~vl~~ 172 (203)
||.+-...+.++..++.|..+|.+|......+.+.+|.++.+..
T Consensus 110 SG~T~e~l~a~~~ak~~Ga~vIaIT~~~~S~La~~ad~~l~~~~ 153 (342)
T 1j5x_A 110 TGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPV 153 (342)
T ss_dssp SSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEECCC
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHhcCEEEEcCC
Confidence 56677888888888888999999998887789999998877654
No 310
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=24.88 E-value=39 Score=30.98 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=41.8
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCceEEEeecC
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 155 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tvi~~~h~ 155 (203)
++|+-..|.--.++++ .+-+.+.++..-+|+ -.|. =++|..++..+.+.++.+.+ |+|+|+++|+
T Consensus 474 ~~~~~~~LSgGq~qrl-~iAral~~~p~illl--DEpt---------s~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 538 (582)
T 3b60_A 474 IGENGVLLSGGQRQRI-AIARALLRDSPILIL--DEAT---------SALDTESERAIQAALDELQK-NRTSLVIAHR 538 (582)
T ss_dssp CCTTSCSSCHHHHHHH-HHHHHHHHCCSEEEE--ETTT---------SSCCHHHHHHHHHHHHHHHT-TSEEEEECSC
T ss_pred ccCCCCCCCHHHHHHH-HHHHHHHhCCCEEEE--ECcc---------ccCCHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence 4677778887777765 455556554333333 1111 13467777788888877754 8999999997
No 311
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.72 E-value=1.7e+02 Score=25.94 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHh----CCCeEEEEecCCCc
Q psy8397 62 RLSIALELIDNPPIMFLDEPTTG----------LDSNSTNQCVAMLKALAR----GGRTIVCTIHQPSA 116 (203)
Q Consensus 62 rl~iA~aL~~~P~vLlLDEPt~g----------LD~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~~ 116 (203)
|-.+..|-...|-|+|+||--+- -|....+.+..+|.++-. .+.-||.+|..++.
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 34556666788999999996432 234455566667777642 25678999988763
No 312
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=24.70 E-value=63 Score=24.80 Aligned_cols=38 Identities=5% Similarity=0.014 Sum_probs=27.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 73 P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
-..+|+| +|.++.....+.+.++++.....+-|+.||.
T Consensus 35 ~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 72 (233)
T 3q6v_A 35 DGITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTNY 72 (233)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSSS
T ss_pred CeEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECCC
Confidence 4577788 4667777778888888775445677899985
No 313
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=24.63 E-value=3.3e+02 Score=25.92 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccC----CCchhHHHHHHHHhhhCCceEEEeecCchh-HHHhhcCE
Q psy8397 92 QCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLD----SNSTNQCVAMLKALARGGRTIVCTIHQPSA-TIFEMVDH 166 (203)
Q Consensus 92 ~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~tvi~~~h~~~~-~i~~~~d~ 166 (203)
...+.|+++++.|..+++.|=|....+..++++++|+ +-.+.+-...++.+.+.|..|.++---.++ .+.+.+|-
T Consensus 558 ~~~~aI~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~~~P~~K~~~v~~l~~~g~~V~~vGDG~ND~paL~~Adv 637 (736)
T 3rfu_A 558 STPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADI 637 (736)
T ss_dssp SHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECSCCHHHHHHHHHHHHHHSCCEEEEECSSTTHHHHHHSSE
T ss_pred hHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHhcCCEEEEEECChHhHHHHHhCCE
Confidence 3456788888889999999999988899999999994 334455556666776667667666544433 25567787
Q ss_pred EEEEeCCe
Q psy8397 167 LYVIAEGH 174 (203)
Q Consensus 167 v~vl~~G~ 174 (203)
-+-|.+|.
T Consensus 638 GIAmg~g~ 645 (736)
T 3rfu_A 638 GIAMGTGT 645 (736)
T ss_dssp EEEESSSC
T ss_pred EEEeCCcc
Confidence 77776664
No 314
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.34 E-value=1.6e+02 Score=19.52 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 30 ~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
.....+...++..|.. +...+.|+.-. ...--..|+++|+|--..+.|. ..+.+.+++.. ....||+
T Consensus 14 ~~~~~l~~~l~~~~~~------v~~~~~~~~a~---~~~~~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~ 80 (124)
T 1srr_A 14 GIRILLNEVFNKEGYQ------TFQAANGLQAL---DIVTKERPDLVLLDMKIPGMDG---IEILKRMKVID-ENIRVII 80 (124)
T ss_dssp HHHHHHHHHHHTTTCE------EEEESSHHHHH---HHHHHHCCSEEEEESCCTTCCH---HHHHHHHHHHC-TTCEEEE
T ss_pred HHHHHHHHHHHHCCcE------EEEeCCHHHHH---HHHhccCCCEEEEecCCCCCCH---HHHHHHHHHhC-CCCCEEE
Confidence 3445566677665532 22233343321 1122358999999987777664 23444444432 3455666
Q ss_pred EecCC
Q psy8397 110 TIHQP 114 (203)
Q Consensus 110 ~tH~~ 114 (203)
.|...
T Consensus 81 ~s~~~ 85 (124)
T 1srr_A 81 MTAYG 85 (124)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 65543
No 315
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=24.24 E-value=1.5e+02 Score=20.57 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=24.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
..|+++|+|-...+.|. ..+.+.+++.. .+..||+.|-.
T Consensus 48 ~~~dlvllD~~lp~~~g---~~l~~~l~~~~-~~~~ii~ls~~ 86 (141)
T 3cu5_A 48 HPPNVLLTDVRMPRMDG---IELVDNILKLY-PDCSVIFMSGY 86 (141)
T ss_dssp SCCSEEEEESCCSSSCH---HHHHHHHHHHC-TTCEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhC-CCCcEEEEeCC
Confidence 57999999987777664 34455555432 24555555544
No 316
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=24.03 E-value=55 Score=30.18 Aligned_cols=47 Identities=9% Similarity=0.330 Sum_probs=37.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhh
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEM 121 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~ 121 (203)
+.+|+|+++|.+-+ +.+++...+.++.+.|..+|++.-+.+.++.+.
T Consensus 213 ~en~~Ill~d~~Is-----~~~~l~~~le~i~~~g~~lvii~~~I~~~Al~~ 259 (543)
T 1we3_A 213 LEDAFILIVEKKVS-----NVRELLPILEQVAQTGKPLLIIAEDVEGEALAT 259 (543)
T ss_dssp EEEEEEEEESSCBC-----CHHHHHHHHHHHHTTTCCEEEEESCBCHHHHHH
T ss_pred ecCceEEEECCCcC-----CHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHH
Confidence 57899999999855 455678888888888999999998887665554
No 317
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=24.03 E-value=94 Score=24.75 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 82 TTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 82 t~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
-+|||+.....+.++++...++|..+.+++=+-+
T Consensus 30 v~gLdp~~a~al~~m~~aA~~~Gi~l~v~sGyRS 63 (179)
T 1xp2_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRS 63 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCeEEEEEeecC
Confidence 3699999999999999999989998777765544
No 318
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=23.99 E-value=54 Score=30.31 Aligned_cols=106 Identities=10% Similarity=0.257 Sum_probs=45.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhc--c----cc--C--CCchhHHHHHH
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH--L----GL--D--SNSTNQCVAML 139 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~--~----~~--~--~~~~~~~~~~~ 139 (203)
+.+|+|+++|.+.+..+. +...++++.+.|..+|++.-+.+.++.+.+-. | .+ . -+-.+.-+..|
T Consensus 215 ~en~~Ill~d~~I~~~~~-----l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~l 289 (545)
T 1iok_A 215 LEDAYILLHEKKLSSLQP-----MVPLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAML 289 (545)
T ss_dssp EEEEEEEECSSCBCCCCC----------------CCCCEEEESCBC-----------------CEEEECSCCTTHHHHHH
T ss_pred ecCCeEEEEcCCcCCHHH-----HHHHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhccHHHH
Confidence 578999999999776553 66778888888999999988876655443211 1 11 0 11113345667
Q ss_pred HHhhh-CCceEEEe-----ecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 140 KALAR-GGRTIVCT-----IHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 140 ~~~~~-~g~tvi~~-----~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
+-+.. -|-+++.. ..++.....-.|+++.+-++--++..|.
T Consensus 290 e~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~ 336 (545)
T 1iok_A 290 QDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGA 336 (545)
T ss_dssp HHHHHHHTC---------------CTTSEEEEEEEECSSCEEEESCC
T ss_pred HHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEEecCEEEEEeCC
Confidence 75522 35555543 3333222344677777654444555543
No 319
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=23.95 E-value=74 Score=29.21 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=60.2
Q ss_pred hcCCCEEEEeCC-------------CCCCCHH------HHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCC
Q psy8397 70 IDNPPIMFLDEP-------------TTGLDSN------STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130 (203)
Q Consensus 70 ~~~P~vLlLDEP-------------t~gLD~~------~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~ 130 (203)
+.+|+|+++|-| -+..+.. ..+.+...++++.+.|..+|++.-..+..+.+.+..-++.--
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av 311 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAV 311 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEe
Confidence 579999999999 3333321 223357788888888999999998888777766655444111
Q ss_pred chhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEEEE
Q psy8397 131 STNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLYVI 170 (203)
Q Consensus 131 ~~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~vl 170 (203)
...-...|+.+.. -|.+++....++.....-.|+++.+.
T Consensus 312 -~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~ 351 (543)
T 1a6d_B 312 -RRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQV 351 (543)
T ss_dssp -CSCCHHHHHHHHHHHTCCEESCGGGCCGGGCEEEEEEEEE
T ss_pred -ccCCHHHHHHHHHHhCCceecccccCCHHHCCCceEEEEE
Confidence 1223455555522 35566654444433233355555543
No 320
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=23.80 E-value=1.9e+02 Score=20.30 Aligned_cols=74 Identities=9% Similarity=0.029 Sum_probs=52.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---C-CeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhhhCCc
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARG---G-RTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~---g-~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 147 (203)
.|.++++ .+...||..+...+.+.+.++..+ + ..||+=--... -||+.|...+....+.+.+.|.
T Consensus 13 ~~~v~v~-~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~----------~iDssgl~~L~~~~~~~~~~g~ 81 (130)
T 2kln_A 13 VPGLVVY-RYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNV----------EVDLTALDALDQLRTELLRRGI 81 (130)
T ss_dssp SSSEEEE-ECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCS----------SSBCSTTTHHHHHHHHHHTTTE
T ss_pred CCCEEEE-EECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCC----------hhhHHHHHHHHHHHHHHHHCCC
Confidence 3566666 567779999999999999887654 3 34554322222 2588888888888888888888
Q ss_pred eEEEeecCc
Q psy8397 148 TIVCTIHQP 156 (203)
Q Consensus 148 tvi~~~h~~ 156 (203)
.++++.-.+
T Consensus 82 ~l~l~~~~~ 90 (130)
T 2kln_A 82 VFAMARVKQ 90 (130)
T ss_dssp EEEEECCSS
T ss_pred EEEEEcCCH
Confidence 877765554
No 321
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=23.58 E-value=57 Score=27.16 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 67 ~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
..+..+.+++++||+...+.......+.+.+.+.. .+..+|+++..+
T Consensus 71 ~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~-~~~~~il~~~~~ 117 (343)
T 1jr3_D 71 MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNKL 117 (343)
T ss_dssp HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB-TTEEEEEEESCC
T ss_pred cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCC-CCeEEEEEcCCC
Confidence 45667889999999977677666666666555422 244555555443
No 322
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=23.43 E-value=38 Score=29.78 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=38.6
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhh-hCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA-RGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~tvi~~~h 154 (203)
+|.+...|.--.++++. +-+.|..+-.-+|+ =.|- =++|..+...+.+.++.+. +.|.|||++||
T Consensus 157 ~~~~~~~LSGGqkQRVa-IArAL~~~P~lLLl--DEPT---------s~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH 222 (366)
T 3tui_C 157 HDSYPSNLSGGQKQRVA-IARALASNPKVLLC--DQAT---------SALDPATTRSILELLKDINRRLGLTILLITH 222 (366)
T ss_dssp TTCCTTTSCHHHHHHHH-HHHHTTTCCSEEEE--ESTT---------TTSCHHHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred hcCChhhCCHHHHHHHH-HHHHHhcCCCEEEE--ECCC---------ccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 46777777766665543 33444433222222 1111 1336666777778888774 45999999999
No 323
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.02 E-value=1.8e+02 Score=26.01 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397 61 KRLSIALELIDNPPIMFLDEPT----------TGLDSNSTNQCVAMLKALAR----GGRTIVCTIHQPS 115 (203)
Q Consensus 61 qrl~iA~aL~~~P~vLlLDEPt----------~gLD~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~ 115 (203)
-|-.+..|-...|-|+|+||-- .+=+......+..+|..+-. ++.-||.+|..++
T Consensus 263 ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 263 VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp HHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred HHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch
Confidence 3555666777889999999952 12233344455556666532 3567888998875
No 324
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=22.93 E-value=59 Score=29.38 Aligned_cols=52 Identities=15% Similarity=0.354 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHhC-CCeEEEEecCCC
Q psy8397 64 SIALELIDNPPIMFLDEPT----------TGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS 115 (203)
Q Consensus 64 ~iA~aL~~~P~vLlLDEPt----------~gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~~ 115 (203)
.+..|.-..|.+|||||-- ..+.......++..+..+... +..||.+|+.++
T Consensus 289 ~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred HHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 4555666788999999961 112223334444444443333 456677787763
No 325
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=22.66 E-value=1.8e+02 Score=19.54 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
....+...++..|.. +...+.|..-.-. .--..|+++|+|--..+.|. ..+.+.+++.. ....||+.
T Consensus 15 ~~~~l~~~L~~~g~~------v~~~~~~~~a~~~---~~~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~ 81 (136)
T 1mvo_A 15 IVTLLQYNLERSGYD------VITASDGEEALKK---AETEKPDLIVLDVMLPKLDG---IEVCKQLRQQK-LMFPILML 81 (136)
T ss_dssp HHHHHHHHHHHTTCE------EEEESSHHHHHHH---HHHHCCSEEEEESSCSSSCH---HHHHHHHHHTT-CCCCEEEE
T ss_pred HHHHHHHHHHHCCcE------EEEecCHHHHHHH---HhhcCCCEEEEecCCCCCCH---HHHHHHHHcCC-CCCCEEEE
Confidence 344566677766542 2223334332211 12357999999988777764 23444444422 23445554
Q ss_pred ecC
Q psy8397 111 IHQ 113 (203)
Q Consensus 111 tH~ 113 (203)
|..
T Consensus 82 s~~ 84 (136)
T 1mvo_A 82 TAK 84 (136)
T ss_dssp ECT
T ss_pred ECC
Confidence 443
No 326
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.49 E-value=0.44 Score=38.65 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy8397 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPT 82 (203)
Q Consensus 52 v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt 82 (203)
...|||||+|++.+++++..+|++ +|++.
T Consensus 143 l~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 143 LVEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp HHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred HHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 446889999999999999999987 67764
No 327
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=22.25 E-value=1.7e+02 Score=19.51 Aligned_cols=71 Identities=8% Similarity=-0.008 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q psy8397 31 TIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110 (203)
Q Consensus 31 ~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~ 110 (203)
..+.+..+++..|.. +...+.|+.- +...--..|+++|+|--..+.|. ..+.+.+++.. .+..||+.
T Consensus 15 ~~~~l~~~l~~~~~~------v~~~~~~~~~---~~~~~~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~ 81 (126)
T 1dbw_A 15 VRKSLAFMLTMNGFA------VKMHQSAEAF---LAFAPDVRNGVLVTDLRMPDMSG---VELLRNLGDLK-INIPSIVI 81 (126)
T ss_dssp HHHHHHHHHHHTTCE------EEEESCHHHH---HHHGGGCCSEEEEEECCSTTSCH---HHHHHHHHHTT-CCCCEEEE
T ss_pred HHHHHHHHHHhCCcE------EEEeCCHHHH---HHHHhcCCCCEEEEECCCCCCCH---HHHHHHHHhcC-CCCCEEEE
Confidence 445566677765542 1122333321 12222357999999987767664 23444444322 24455555
Q ss_pred ecCC
Q psy8397 111 IHQP 114 (203)
Q Consensus 111 tH~~ 114 (203)
|...
T Consensus 82 s~~~ 85 (126)
T 1dbw_A 82 TGHG 85 (126)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 5443
No 328
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=21.97 E-value=1.9e+02 Score=20.59 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=37.3
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 71 DNPPIMFLD-EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 71 ~~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
.+++.+++| .-..-+|......+.+..+.+...|..++++.=.+
T Consensus 41 ~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~p 85 (123)
T 3zxn_A 41 VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKP 85 (123)
T ss_dssp SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCCH
T ss_pred cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478899999 88888999999999999999987788887776544
No 329
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=21.96 E-value=38 Score=30.79 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=56.5
Q ss_pred hcCCCEEEEeCCCCC--------CCHHHHHH-----------HHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCC
Q psy8397 70 IDNPPIMFLDEPTTG--------LDSNSTNQ-----------CVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130 (203)
Q Consensus 70 ~~~P~vLlLDEPt~g--------LD~~~~~~-----------i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~ 130 (203)
+.+|+|+++|-|..- +...+..+ +.+.++++.+.|..+|++.-..+.++.+.+..-++.--
T Consensus 185 i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av 264 (500)
T 3aq1_B 185 VENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAV 264 (500)
T ss_dssp EEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred ccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCCcCHHHHHHHHHCCEEEE
Confidence 579999999998321 11222222 47788888888999999998888777776655544111
Q ss_pred chhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEEEE
Q psy8397 131 STNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLYVI 170 (203)
Q Consensus 131 ~~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~vl 170 (203)
...-+..|+-+.. -|.+++....++.....-.|+++.+-
T Consensus 265 -~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~ 304 (500)
T 3aq1_B 265 -RRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEK 304 (500)
T ss_dssp -CSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEE
T ss_pred -EeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEE
Confidence 1223445554422 25555544444432223345555554
No 330
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.96 E-value=1.9e+02 Score=19.67 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 30 ~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
.....+...|+..|.. +...+.|+.-. ...--..|+++|+|- ..+. ....+++.+++.. .+.-||+
T Consensus 15 ~~~~~l~~~L~~~g~~------v~~~~~~~~a~---~~l~~~~~dlvi~d~-~~~~---~g~~~~~~l~~~~-~~~pii~ 80 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFN------VIWAKNEQEAF---TFLRREKIDLVFVDV-FEGE---ESLNLIRRIREEF-PDTKVAV 80 (142)
T ss_dssp HHHHHHHHHHGGGTCE------EEEESSHHHHH---HHHTTSCCSEEEEEC-TTTH---HHHHHHHHHHHHC-TTCEEEE
T ss_pred HHHHHHHHHHHhCCCE------EEEECCHHHHH---HHHhccCCCEEEEeC-CCCC---cHHHHHHHHHHHC-CCCCEEE
Confidence 3445566677766542 22233333211 122236799999997 5442 3344555555432 2455666
Q ss_pred EecCCC
Q psy8397 110 TIHQPS 115 (203)
Q Consensus 110 ~tH~~~ 115 (203)
.|-..+
T Consensus 81 ls~~~~ 86 (142)
T 2qxy_A 81 LSAYVD 86 (142)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 655433
No 331
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=21.94 E-value=1.7e+02 Score=20.34 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=37.0
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEecC
Q psy8397 71 DNPPIMFLD-EPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQ 113 (203)
Q Consensus 71 ~~P~vLlLD-EPt~gLD~~~~~~i~~~l~~l~~-~g~tvi~~tH~ 113 (203)
..|+.+++| .....+|......+....+++.+ .|..+.++.-.
T Consensus 46 ~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~ 90 (121)
T 3t6o_A 46 AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVS 90 (121)
T ss_dssp SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEESCC
T ss_pred cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467889999 77889999999999999999998 89888887543
No 332
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.93 E-value=1.8e+02 Score=19.77 Aligned_cols=74 Identities=7% Similarity=-0.009 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHH-cCCcccccccCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCe
Q psy8397 30 DTIGLVDDILDT-IGLVLSKHTLCGRLSGGQKKRLSIALELI-DNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRT 106 (203)
Q Consensus 30 ~~~~~v~~~L~~-~~L~~~~~~~v~~LSgGqrqrl~iA~aL~-~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~-~~g~t 106 (203)
.....+..+|+. .|.. +...+.|+.-. ...-- ..|+++|+|=-..| ......+.+.+++.. ....-
T Consensus 15 ~~~~~l~~~L~~~~~~~------v~~~~~~~~a~---~~l~~~~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ 83 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYD------FIEVENLKKFY---SIFKDLDSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTP 83 (140)
T ss_dssp HHHHHHHHHHHHHCCCE------EEEECSHHHHH---TTTTTCCCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCC
T ss_pred HHHHHHHHHHHhccCcc------EEEECCHHHHH---HHHhcCCCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCC
Confidence 345556677777 5542 22233343211 11112 67999999965540 233445555555521 12455
Q ss_pred EEEEecCC
Q psy8397 107 IVCTIHQP 114 (203)
Q Consensus 107 vi~~tH~~ 114 (203)
||+.|-..
T Consensus 84 ii~ls~~~ 91 (140)
T 3lua_A 84 VIIATKSD 91 (140)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 55555443
No 333
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=21.92 E-value=1.5e+02 Score=20.26 Aligned_cols=40 Identities=5% Similarity=-0.006 Sum_probs=23.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
-..|+++|+|--..+.|- ..+.+.+++.. ....+|+.|-.
T Consensus 42 ~~~~dlvl~D~~lp~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 81 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTG---VDFLTEVRERW-PETVRIIITGY 81 (139)
T ss_dssp HSCEEEEEEESCCSSSCH---HHHHHHHHHHC-TTSEEEEEESC
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCcEEEEeCC
Confidence 357999999987777764 24444444432 23444444433
No 334
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=21.64 E-value=1.7e+02 Score=26.86 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=40.5
Q ss_pred hcCCCEEEEeCCCC-------------CCC-H-----HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcccc
Q psy8397 70 IDNPPIMFLDEPTT-------------GLD-S-----NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127 (203)
Q Consensus 70 ~~~P~vLlLDEPt~-------------gLD-~-----~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~ 127 (203)
+.+|+|+++|-|.. ..+ . ...+.+.+.++++.+.|..+|++.-..+....+.+.+-++
T Consensus 236 ~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI 312 (550)
T 3p9d_G 236 FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNI 312 (550)
T ss_dssp CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTC
T ss_pred ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCC
Confidence 78999999999842 222 1 1223456678888888999999988877666666655554
No 335
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=21.47 E-value=89 Score=28.86 Aligned_cols=106 Identities=13% Similarity=0.309 Sum_probs=65.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhh--cc----cc--C--CCchhHHHHHH
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD--HL----GL--D--SNSTNQCVAML 139 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~--~~----~~--~--~~~~~~~~~~~ 139 (203)
+.+|+||++|-+.+.. +++...++++.+.|+.+|++.-+.+.++.+.+- +| .+ . -+-.+.-+..|
T Consensus 214 lenp~Ill~d~~Is~~-----~~l~~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~l 288 (547)
T 1kp8_A 214 LESPFILLADKKISNI-----REMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAML 288 (547)
T ss_dssp EESCEEECEESEECCG-----GGTHHHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHH
T ss_pred ecCceEEEEcCcCCCH-----HHHHHHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHH
Confidence 5799999999986643 347788888888899999999888766666422 11 11 1 11223345667
Q ss_pred HHhhh-CCceEEEe-----ecCchhHHHhhcCEEEEEeCCeEEeeCC
Q psy8397 140 KALAR-GGRTIVCT-----IHQPSATIFEMVDHLYVIAEGHCVYKGS 180 (203)
Q Consensus 140 ~~~~~-~g~tvi~~-----~h~~~~~i~~~~d~v~vl~~G~i~~~g~ 180 (203)
+-+.. -|-+++.. ..++.....-.|+++.+-++--++..|.
T Consensus 289 e~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~ 335 (547)
T 1kp8_A 289 QDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGV 335 (547)
T ss_dssp HHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEECSSCEEEEEEC
T ss_pred HHHHHHhCCeEecccccCCcccCCHHHCCceeEEEEccceEEEEcCC
Confidence 75532 35566653 3444433345677877755544555553
No 336
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=21.21 E-value=70 Score=29.40 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=59.1
Q ss_pred hcCCCEEEEeCCCCC-------------CCH------HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCC
Q psy8397 70 IDNPPIMFLDEPTTG-------------LDS------NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130 (203)
Q Consensus 70 ~~~P~vLlLDEPt~g-------------LD~------~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~ 130 (203)
+.+|+|+++|-|... .+. ...+.+.+.++++.+.|..+|++.-..+..+.+.+.+=++..-
T Consensus 227 ~~n~kIll~~~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v 306 (543)
T 3ruv_A 227 VTDAKIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAA 306 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEE
T ss_pred ccCcEEEEEcccccccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEE
Confidence 678999999987421 111 1123466778888888999999998888777776654443111
Q ss_pred chhHHHHHHHHhhh-CCceEEEeecCchhHHHhhcCEEEEE
Q psy8397 131 STNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLYVI 170 (203)
Q Consensus 131 ~~~~~~~~~~~~~~-~g~tvi~~~h~~~~~i~~~~d~v~vl 170 (203)
...-...|+.+.. -|.+++....++.....-.|+++.+-
T Consensus 307 -~~v~k~~le~ia~~tGa~iis~l~~l~~~~LG~a~~v~~~ 346 (543)
T 3ruv_A 307 -RRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEER 346 (543)
T ss_dssp -CSCCHHHHHHHHHHHCCCEESCGGGCCGGGCEEEEEEEEE
T ss_pred -eeCCHHHHHHHHHHhCCceecccccCCHHHCCcccEEEEE
Confidence 1112445555522 35566655555443333456666554
No 337
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.18 E-value=2.4e+02 Score=20.39 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=47.2
Q ss_pred CCHhHHHhHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy8397 23 ISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102 (203)
Q Consensus 23 ~~~~~~~~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~ 102 (203)
+=|+|....++.+..+|+..|... +..-+.|+.- +...--.+|+++|+|=-.-++|- -++.+.|++...
T Consensus 16 LiVDD~~~~r~~l~~~L~~~G~~~-----v~~a~~g~~a---l~~~~~~~~DlillD~~MP~mdG---~el~~~ir~~~~ 84 (134)
T 3to5_A 16 LIVDDFSTMRRIVKNLLRDLGFNN-----TQEADDGLTA---LPMLKKGDFDFVVTDWNMPGMQG---IDLLKNIRADEE 84 (134)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCC-----EEEESSHHHH---HHHHHHHCCSEEEEESCCSSSCH---HHHHHHHHHSTT
T ss_pred EEEeCCHHHHHHHHHHHHHcCCcE-----EEEECCHHHH---HHHHHhCCCCEEEEcCCCCCCCH---HHHHHHHHhCCC
Confidence 456666667778888999888642 2223445542 22233468999999988888885 234444443222
Q ss_pred -CCCeEEEEecC
Q psy8397 103 -GGRTIVCTIHQ 113 (203)
Q Consensus 103 -~g~tvi~~tH~ 113 (203)
...-||+.|-+
T Consensus 85 ~~~ipvI~lTa~ 96 (134)
T 3to5_A 85 LKHLPVLMITAE 96 (134)
T ss_dssp TTTCCEEEEESS
T ss_pred CCCCeEEEEECC
Confidence 13445554433
No 338
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.12 E-value=2.3e+02 Score=22.10 Aligned_cols=52 Identities=19% Similarity=0.299 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCEEEEeCC-------C---CCCCHHHHHHHHHHHHHHHh----CCCeEEEEecCCC
Q psy8397 64 SIALELIDNPPIMFLDEP-------T---TGLDSNSTNQCVAMLKALAR----GGRTIVCTIHQPS 115 (203)
Q Consensus 64 ~iA~aL~~~P~vLlLDEP-------t---~gLD~~~~~~i~~~l~~l~~----~g~tvi~~tH~~~ 115 (203)
.+..+....|.++++||- . .+-.......+..++..+.. .+..||.+|+.++
T Consensus 96 ~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp HHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 344455566889999996 1 11112222334445555532 2557888888874
No 339
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=21.08 E-value=2.1e+02 Score=19.79 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=24.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecC
Q psy8397 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113 (203)
Q Consensus 70 ~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~ 113 (203)
-..|+++|+|--..+.|. ..+.+.+++.. .+..||++|..
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~~ 88 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGG---IEATRHIRQWD-GAARILIFTMH 88 (153)
T ss_dssp TTCCSEEEECSCCSSSCH---HHHHHHHHHHC-TTCCEEEEESC
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHHhC-CCCeEEEEECC
Confidence 357999999987777663 34455555542 24455555544
No 340
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=20.99 E-value=2e+02 Score=19.99 Aligned_cols=71 Identities=4% Similarity=-0.018 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 30 ~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
.....+...|+..|.. +...+.|+. ++...--..|+++|+|-...+.|. ..+.+.+++.. ...-||+
T Consensus 18 ~~~~~l~~~L~~~g~~------v~~~~~~~~---a~~~l~~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~ 84 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCN------IITFTSPLD---ALEALKGTSVQLVISDMRMPEMGG---EVFLEQVAKSY-PDIERVV 84 (154)
T ss_dssp HHHHHHHHHHHTTTCE------EEEESCHHH---HHHHHTTSCCSEEEEESSCSSSCH---HHHHHHHHHHC-TTSEEEE
T ss_pred HHHHHHHHHHHHcCCe------EEEeCCHHH---HHHHHhcCCCCEEEEecCCCCCCH---HHHHHHHHHhC-CCCcEEE
Confidence 3455566777766542 222333332 122222357999999988777664 24444454432 2455666
Q ss_pred EecC
Q psy8397 110 TIHQ 113 (203)
Q Consensus 110 ~tH~ 113 (203)
+|..
T Consensus 85 ls~~ 88 (154)
T 2rjn_A 85 ISGY 88 (154)
T ss_dssp EECG
T ss_pred EecC
Confidence 5544
No 341
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=20.96 E-value=2.2e+02 Score=30.23 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHhC-CCeEEEEec
Q psy8397 61 KRLSIALELI--DNPPIMFLDEPTTGLD----------------SNSTNQCVAMLKALARG-GRTIVCTIH 112 (203)
Q Consensus 61 qrl~iA~aL~--~~P~vLlLDEPt~gLD----------------~~~~~~i~~~l~~l~~~-g~tvi~~tH 112 (203)
+....++.++ .+|+++++|+.++-.. ......++..|+.++++ |.+||+++|
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinq 867 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEec
No 342
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=20.87 E-value=79 Score=24.14 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=57.8
Q ss_pred cCCCEEEEeCCCCCCCH-------------------HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCc
Q psy8397 71 DNPPIMFLDEPTTGLDS-------------------NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNS 131 (203)
Q Consensus 71 ~~P~vLlLDEPt~gLD~-------------------~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~ 131 (203)
.+|+|++||=|..---+ ...+.+.+.++++...|..||++.--.+..+.+.+.+=+|..-.
T Consensus 20 ~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~a~~~l~k~gI~~v~ 99 (159)
T 1ass_A 20 KNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVR 99 (159)
T ss_dssp EEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESSCBCHHHHHHHHHTTCEEEC
T ss_pred CCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECCccCHHHHHHHHHCCCEEEc
Confidence 68999999987553211 11233566777788889999999988777777766665552111
Q ss_pred hhHHHHHHHHh-hhCCceEEEeecCchhHHHhhcCEEEEEe
Q psy8397 132 TNQCVAMLKAL-ARGGRTIVCTIHQPSATIFEMVDHLYVIA 171 (203)
Q Consensus 132 ~~~~~~~~~~~-~~~g~tvi~~~h~~~~~i~~~~d~v~vl~ 171 (203)
..-...|+.+ ..-|.+++....++...-.-.|+.+....
T Consensus 100 -~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ 139 (159)
T 1ass_A 100 -RVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERK 139 (159)
T ss_dssp -SCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEE
T ss_pred -cCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEE
Confidence 1112233333 22355555555555433334566666543
No 343
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=20.86 E-value=2e+02 Score=19.34 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhcccc
Q psy8397 89 STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127 (203)
Q Consensus 89 ~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~ 127 (203)
-...+.+.|+.+++.|..+.++|......+....+++++
T Consensus 19 ~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l 57 (137)
T 2pr7_A 19 DQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELET 57 (137)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHH
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCCh
Confidence 344577888999888999988888766554444444443
No 344
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=20.78 E-value=2.5e+02 Score=23.99 Aligned_cols=58 Identities=19% Similarity=0.082 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHh--c-CCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397 54 RLSGGQKKRLSIALELI--D-NPPIMFLDEPTTGLDSN-------STNQCVAMLKALARG-GRTIVCTIHQ 113 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~--~-~P~vLlLDEPt~gLD~~-------~~~~i~~~l~~l~~~-g~tvi~~tH~ 113 (203)
.+|-. +..+.++.+. + +++++++|--..=-.+. ....+...|+.++++ +++||+++|-
T Consensus 137 ~~si~--~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl 205 (338)
T 4a1f_A 137 YVRIE--QIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQL 205 (338)
T ss_dssp TCCHH--HHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CCcHH--HHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEec
Confidence 45544 3334455554 3 68999999654322221 245677778888876 9999999985
No 345
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=20.74 E-value=1.7e+02 Score=24.78 Aligned_cols=78 Identities=12% Similarity=0.215 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCEEEEeCCCC-------CC---CHHHHHHHHHHHHHHHh---CCCeEEEEecCC---Cchhhhhhhc-cc
Q psy8397 64 SIALELIDNPPIMFLDEPTT-------GL---DSNSTNQCVAMLKALAR---GGRTIVCTIHQP---SATIFEMVDH-LG 126 (203)
Q Consensus 64 ~iA~aL~~~P~vLlLDEPt~-------gL---D~~~~~~i~~~l~~l~~---~g~tvi~~tH~~---~~~~~~~~~~-~~ 126 (203)
.+..+-..+|.+||+||--. +. .......++..+..... ....||.+|+.+ +..+..+|.. +-
T Consensus 199 ~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 199 LFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVY 278 (389)
T ss_dssp HHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEE
T ss_pred HHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEE
Confidence 34444556889999999832 11 12222333344443332 134566677764 3344444432 33
Q ss_pred cCCCchhHHHHHHHH
Q psy8397 127 LDSNSTNQCVAMLKA 141 (203)
Q Consensus 127 ~~~~~~~~~~~~~~~ 141 (203)
+.-.+..+....++.
T Consensus 279 i~~p~~~~r~~il~~ 293 (389)
T 3vfd_A 279 VSLPNEETRLLLLKN 293 (389)
T ss_dssp CCCCCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHH
Confidence 333444444444443
No 346
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=20.68 E-value=2.1e+02 Score=24.47 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEEecC
Q psy8397 62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR--GGRTIVCTIHQ 113 (203)
Q Consensus 62 rl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~--~g~tvi~~tH~ 113 (203)
-+++..+|+..|+++++=|-- .| ...+.+.+++..+ ++..||+++--
T Consensus 176 ~lAl~a~lA~ga~~iliPE~~--~~---~~~i~~~i~~~~~~gk~~~iIvvaEG 224 (320)
T 1pfk_A 176 DLTLAAAIAGGCEFVVVPEVE--FS---REDLVNEIKAGIAKGKKHAIVAITEH 224 (320)
T ss_dssp HHHHHHHHHTTCSEEECTTSC--CC---HHHHHHHHHHHHHTTCSCEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEeCCCC--CC---HHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 588999999999999995531 23 3467777776543 46788888754
No 347
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=20.50 E-value=3.9e+02 Score=23.44 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHh--cCCC--EEEEeCCCCC--C--C---HHHHHHHHHHHHHHHhC-CCeEEEEecC
Q psy8397 54 RLSGGQKKRLSIALELI--DNPP--IMFLDEPTTG--L--D---SNSTNQCVAMLKALARG-GRTIVCTIHQ 113 (203)
Q Consensus 54 ~LSgGqrqrl~iA~aL~--~~P~--vLlLDEPt~g--L--D---~~~~~~i~~~l~~l~~~-g~tvi~~tH~ 113 (203)
.+|-.+-. +.++.+. ++|+ ++++|--+.= - . ......+...|+.++++ |.+||+++|-
T Consensus 290 ~~s~~~i~--~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 290 GQSVNYIW--SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp SCBHHHHH--HHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCCHHHHH--HHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 35555532 2334443 4899 9999955321 1 1 11234556677777766 9999999994
No 348
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=20.39 E-value=73 Score=27.22 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=26.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~ 115 (203)
.++++++|-|..|++... ++. +. .+..++++|.++.
T Consensus 295 ~fD~Vv~dPPr~g~~~~~----~~~---l~-~~g~ivyvsc~p~ 330 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSET----EKM---VQ-AYPRILYISCNPE 330 (369)
T ss_dssp CEEEEEECCCTTCCCHHH----HHH---HT-TSSEEEEEESCHH
T ss_pred CCCEEEECcCccccHHHH----HHH---Hh-CCCEEEEEECCHH
Confidence 578999999999998533 222 22 5778999998865
No 349
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=20.35 E-value=58 Score=28.16 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=39.1
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCchhHHHHHHHHhh-hCCceEEEeec
Q psy8397 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA-RGGRTIVCTIH 154 (203)
Q Consensus 78 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~tvi~~~h 154 (203)
+|.+...|.--.++++ .+.+.+..+-.-+++= .|- =++|.....++...++.+. +.|.|+|++||
T Consensus 121 ~~~~~~~LSgGq~QRv-alAraL~~~P~lLLLD--EP~---------s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 121 LDRNPLTLSGGEQQRV-ALARALVTNPKILLLD--EPL---------SALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp TTSCGGGSCHHHHHHH-HHHHHTTSCCSEEEEE--SSS---------TTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hcCChhhCCHHHHHHH-HHHHHHHcCCCEEEEE--Ccc---------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4666677777666654 3445555333222221 111 1236677778888888774 45999999999
No 350
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=20.34 E-value=2.2e+02 Score=23.19 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=10.7
Q ss_pred hcCCCEEEEeCCC
Q psy8397 70 IDNPPIMFLDEPT 82 (203)
Q Consensus 70 ~~~P~vLlLDEPt 82 (203)
-..|.|||+||-=
T Consensus 97 ~~~~~vl~iDEiD 109 (293)
T 3t15_A 97 KGNMCCLFINDLD 109 (293)
T ss_dssp TSSCCCEEEECCC
T ss_pred cCCCeEEEEechh
Confidence 4579999999983
No 351
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.29 E-value=2.3e+02 Score=19.87 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHcCCcccccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEE
Q psy8397 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVC 109 (203)
Q Consensus 30 ~~~~~v~~~L~~~~L~~~~~~~v~~LSgGqrqrl~iA~aL~~~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~ 109 (203)
...+.+..+|+..|..- +...+.|+.-. ......-..|+++|+|=-..+.|. ..+++.|++... ..-||+
T Consensus 47 ~~~~~l~~~L~~~g~~v-----~~~~~~~~~al-~~l~~~~~~~dliilD~~l~~~~g---~~~~~~lr~~~~-~~~ii~ 116 (157)
T 3hzh_A 47 FTVKQLTQIFTSEGFNI-----IDTAADGEEAV-IKYKNHYPNIDIVTLXITMPKMDG---ITCLSNIMEFDK-NARVIM 116 (157)
T ss_dssp HHHHHHHHHHHHTTCEE-----EEEESSHHHHH-HHHHHHGGGCCEEEECSSCSSSCH---HHHHHHHHHHCT-TCCEEE
T ss_pred HHHHHHHHHHHhCCCeE-----EEEECCHHHHH-HHHHhcCCCCCEEEEeccCCCccH---HHHHHHHHhhCC-CCcEEE
Confidence 34556777787766432 11233333222 112222227899999987777664 344555555432 344544
Q ss_pred EecC
Q psy8397 110 TIHQ 113 (203)
Q Consensus 110 ~tH~ 113 (203)
.|-.
T Consensus 117 ls~~ 120 (157)
T 3hzh_A 117 ISAL 120 (157)
T ss_dssp EESC
T ss_pred Eecc
Confidence 4443
No 352
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=20.24 E-value=87 Score=22.56 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q psy8397 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114 (203)
Q Consensus 72 ~P~vLlLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi~~tH~~ 114 (203)
+..+|++||. ..|++..+..+++.+... .....+|++|...
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSC
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcC
Confidence 6689999998 468888888888877332 2245677777653
No 353
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=20.23 E-value=1.7e+02 Score=26.84 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCCEEEEeCCC--------------CCCCH-----HHHHHHHHHHHHHHhCCCeEEEEecCCCchhhhhhhccccCCCch
Q psy8397 72 NPPIMFLDEPT--------------TGLDS-----NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNST 132 (203)
Q Consensus 72 ~P~vLlLDEPt--------------~gLD~-----~~~~~i~~~l~~l~~~g~tvi~~tH~~~~~~~~~~~~~~~~~~~~ 132 (203)
+|+|+++|-|. +.-|. ...+.+...++++.+.|.-+|++.-+.+.++.+.+..=+|..- .
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~I~av-~ 319 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGV-R 319 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTTCEEE-S
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCceE-c
Confidence 99999999885 22232 1224477788888888999999999888777666554444111 1
Q ss_pred hHHHHHHHHhh-hCCceEEEee------cCchhHHHhhcCEEEE
Q psy8397 133 NQCVAMLKALA-RGGRTIVCTI------HQPSATIFEMVDHLYV 169 (203)
Q Consensus 133 ~~~~~~~~~~~-~~g~tvi~~~------h~~~~~i~~~~d~v~v 169 (203)
..-...|+.+. .-|.+++... .++.....-.|+++..
T Consensus 320 ~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~ 363 (559)
T 3p9d_A 320 RCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQ 363 (559)
T ss_dssp SCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEE
T ss_pred cCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEE
Confidence 22244566552 2455665554 2333222335666654
No 354
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.13 E-value=1.2e+02 Score=23.14 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=33.3
Q ss_pred HhcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q psy8397 69 LIDNPPIMFLDEPTT----GLDSNSTNQCVAMLKALARG-GRTIVCTIHQP 114 (203)
Q Consensus 69 L~~~P~vLlLDEPt~----gLD~~~~~~i~~~l~~l~~~-g~tvi~~tH~~ 114 (203)
--.+|+++++|--+. .-+.....++...|+.++++ |.|+++++|..
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 346899999996432 22555666777777777765 99999999864
Done!