RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8397
(203 letters)
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 149 bits (377), Expect = 5e-42
Identities = 61/175 (34%), Positives = 88/175 (50%), Gaps = 48/175 (27%)
Query: 35 VDDILDTIGLVLSKHTLCGR------LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
VD++L +GL +T G LSGG++KRL+ A EL+ +PP++F DEPT+GLDS
Sbjct: 141 VDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS- 199
Query: 89 STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148
F V +LK LA+ G+T
Sbjct: 200 ------------------------------F-----------MAYSVVQVLKGLAQKGKT 218
Query: 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
I+CTIHQPS+ +FE+ D + ++AEG Y GS +P+ +G CP+ +NPAD
Sbjct: 219 IICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPAD 273
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 121 bits (305), Expect = 1e-34
Identities = 53/99 (53%), Positives = 70/99 (70%), Gaps = 5/99 (5%)
Query: 32 IGLV--DDIL---DTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
IG V DDIL T+ L LSGG++KR+SIALEL+ NP ++FLDEPT+GLD
Sbjct: 84 IGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
Query: 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
S+S Q +++L+ LA GRTI+C+IHQPS+ IFE+ D L
Sbjct: 144 SSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKL 182
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 108 bits (271), Expect = 1e-29
Identities = 47/95 (49%), Positives = 58/95 (61%), Gaps = 14/95 (14%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LS Q+KRL+I +EL P I+FLDEPT+GLDS + V LK LA G+ I+CTIHQP
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168
Query: 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
SA+IFE D L L L RGG+T+
Sbjct: 169 SASIFEKFDRLLL--------------LKRGGKTV 189
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 104 bits (262), Expect = 6e-28
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
L +SGG+++R+SIA++L+ +P ++ LDEPT+GLDS + V+ L LAR R ++
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 109 CTIHQPSATIFEMVDHL 125
TIHQP + +F + D +
Sbjct: 198 LTIHQPRSDLFRLFDRI 214
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
[Transport and binding proteins, Other].
Length = 1394
Score = 100 bits (251), Expect = 1e-24
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 51/179 (28%)
Query: 35 VDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPP-IMFLDEPTTGLDSNS 89
V++++ + + + G L+ Q+KRL+I +EL+ P ++FLDEPT+GLDS +
Sbjct: 878 VEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
Query: 90 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
+++ LA G+ I+CTIHQPSA +FE D L L L +GG+T
Sbjct: 938 AWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLL--------------LQKGGQT- 982
Query: 150 VCTIHQPSATIFEMVDHLYVIAEGHCVYKG----SSANTIPYLQTIGLH-CPQYHNPAD 203
VY G +S I Y + G CP+ NPA+
Sbjct: 983 --------------------------VYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015
Score = 73.6 bits (181), Expect = 2e-15
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 46/175 (26%)
Query: 34 LVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
+ D + T GL +++T G +SGG++KR+SIA + I D T GLDS
Sbjct: 184 IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243
Query: 89 STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRT 148
+ + + LK A +L T
Sbjct: 244 TALEFIRALKTSAN-----------------------------------ILDT------T 262
Query: 149 IVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
+ I+Q S +E+ D + V+ EG+ +Y G + Y + +G CP AD
Sbjct: 263 PLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTAD 317
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 93.9 bits (234), Expect = 2e-23
Identities = 31/93 (33%), Positives = 51/93 (54%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
++++L+ GL + LSGG K+RLSIAL L+ +P ++ LDEPT+GLD S +
Sbjct: 117 IEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127
+L+ LA+ G + E+ D + +
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVII 209
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 92.6 bits (230), Expect = 5e-22
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 47/179 (26%)
Query: 30 DTIGLVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
+ I + + ++ +GL ++T+ G +SGG++KR+SIA E++ NP ++ LDEPT+G
Sbjct: 177 EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALAR 144
LD+ + + +V LG +LA+
Sbjct: 237 LDATAA----------------------------YRLVLTLG--------------SLAQ 254
Query: 145 GGRTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
G+TIV ++HQPS+ +++M D + V++EG C++ G ++ + Y +++G NPAD
Sbjct: 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPAD 313
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 91.4 bits (227), Expect = 1e-21
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 35 VDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
VD++++ + L K + G LS Q+KRL+IA+EL+ NP I+F+DEPT+GLD+ +
Sbjct: 995 VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1054
Query: 90 TNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
+ ++ GRT+VCTIHQPS IFE D L L + RGG+ I
Sbjct: 1055 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL--------------MKRGGQVI 1100
Score = 69.9 bits (171), Expect = 5e-14
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 48/176 (27%)
Query: 34 LVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSIALELIDNP-PIMFLDEPTTGLDS 87
+ D L +GL + K T+ G +SGGQKKR++ E+I P +F+DE +TGLDS
Sbjct: 311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKTLFMDEISTGLDS 369
Query: 88 NSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147
++T Q V L+ + +H AT+ +++L
Sbjct: 370 STTYQIVKCLQQI----------VHLTEATVL----------------MSLL-------- 395
Query: 148 TIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYHNPAD 203
QP+ F++ D + +++EG VY+G + + + ++ G CP+ AD
Sbjct: 396 -------QPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTAD 444
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 79.6 bits (197), Expect = 5e-19
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 22 RISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP 81
I +D ++++ IG V LSGGQ++R+++A L+ NP ++ LDEP
Sbjct: 55 EILIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALARALLLNPDLLLLDEP 107
Query: 82 TTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
T+GLD S + + +L+ LA GRT++ H P
Sbjct: 108 TSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 79.8 bits (198), Expect = 1e-18
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V++ L+ +GL + LSGGQK+R++IA L +P I+ LDEPT GLD + +
Sbjct: 115 VEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL 174
Query: 95 AMLKALARGGRTIVCTIHQ 113
+LK L G+TI+ H
Sbjct: 175 ELLKKLKAEGKTIIIVTHD 193
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 77.5 bits (192), Expect = 8e-18
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V+ +L +GL + LSGG K++LS+A+ LI P ++ LDEPT+GLD S
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 95 AMLKALARGGRTIVCTIH 112
++ + R GR+I+ T H
Sbjct: 174 DLILEV-RKGRSIILTTH 190
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 74.2 bits (183), Expect = 3e-16
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
VD+ L+ +G+ + G LSGGQK+R+ +A L NP ++ LDEP TG+D +
Sbjct: 120 VDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY 179
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVDH 124
+LK L + G+T++ H + D
Sbjct: 180 DLLKELRQEGKTVLMVTHDLG-LVMAYFDR 208
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 72.4 bits (179), Expect = 3e-16
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGG K+RL++A L+ +P ++ LDEPT+GLD S + +L+ L + G+TI+ + H
Sbjct: 95 KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 71.5 bits (176), Expect = 1e-15
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 41/125 (32%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
+SGG++KR+SIA L+ ++ D T GLDS++ + + ++ +A +T
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT-------- 170
Query: 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVIAEGH 174
T +++Q S I+++ D + V+ EG
Sbjct: 171 ---------------------------------TTFVSLYQASDEIYDLFDKVLVLYEGR 197
Query: 175 CVYKG 179
+Y G
Sbjct: 198 QIYYG 202
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 71.8 bits (177), Expect = 1e-15
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
G ++ +S + VD+ L+ +GL + L+ + G LSGGQ++R+ +A
Sbjct: 97 GHKGLFRRLSKADKAK--VDEALERVGLSE---------LADRQI-GELSGGQQQRVLLA 144
Query: 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 124
L+ +P ++ LDEP G+D + +L+ L R G TI+ H + E D
Sbjct: 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDR 201
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 69.5 bits (171), Expect = 1e-14
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
L+ +GL+ + +LSGGQ++R++IA L+ P ++ DEP LD S+ Q + +L
Sbjct: 128 ALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187
Query: 98 KALARG-GRTIVCTIHQPS 115
K + R G T++ ++HQ
Sbjct: 188 KRINREEGITVIVSLHQVD 206
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 69.9 bits (172), Expect = 3e-14
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++ +++A L+ +PPI+ LDEPT+ +D+ S + LK G+T+V H+
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRT 660
Query: 115 SATIFEMVDHL 125
S + ++VD +
Sbjct: 661 S--LLDLVDRI 669
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 67.8 bits (167), Expect = 4e-14
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+++L+ +GL G LS GQ++RL IA L +P ++ LDEP GL+ T +
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183
Query: 95 AMLKALARGGRTIV 108
+++ L G T++
Sbjct: 184 ELIRELRERGITVL 197
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 67.1 bits (164), Expect = 5e-14
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V++ L +GL + +LS GQ++R+++A L+ P+ LDEPTT LD +
Sbjct: 106 VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA 165
Query: 95 AMLKALARGGRTIVCTIHQP 114
+ G +V T HQ
Sbjct: 166 EAMAGHCARGGMVVLTTHQD 185
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 66.7 bits (163), Expect = 6e-14
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V + L +G + LSGG+KKR++IA + P ++ LDEPT GLD Q +
Sbjct: 108 VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 95 AMLKALARGGRTIVCTIH 112
A+L+ L G T+V + H
Sbjct: 168 AILRRLRAEGMTVVISTH 185
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 67.4 bits (165), Expect = 7e-14
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+D++LD +GL+ + L SGG ++RL IA L+ P ++FLDEPT GLD +
Sbjct: 112 IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171
Query: 95 AMLKAL-ARGGRTIVCTIH 112
++ L G TI+ T H
Sbjct: 172 EYIEKLKEEFGMTILLTTH 190
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 66.7 bits (164), Expect = 8e-14
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
+L+ +GL + LSGGQ++R++IA L ++P I+ DEPT LDS + + + +L
Sbjct: 124 LLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 98 KALARG-GRTIVCTIHQPSA-----TIFEMVD 123
+ L + G TIV H P I E+ D
Sbjct: 184 RELNKEAGTTIVVVTHDPELAEYADRIIELRD 215
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 66.9 bits (164), Expect = 1e-13
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
+ +L+ +GL LSGGQK+R++IA L+ P ++ DEPT LDS S
Sbjct: 117 EARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176
Query: 90 TNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHL 125
V +++ LAR G TI+ H I ++ D +
Sbjct: 177 GRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRI 211
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 66.8 bits (164), Expect = 1e-13
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
+V + L+ +GL ++ LSGG KKR+++A L +P ++ DEPT GLD ++
Sbjct: 116 IVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175
Query: 94 VAMLKALAR--GGRTIVCTIHQPSATIFEMVDHLGL 127
++++L + G +I+ T H T F + D + +
Sbjct: 176 DDLIRSLKKELGLTSIMVT-HDLD-TAFAIADRIAV 209
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 66.2 bits (162), Expect = 1e-13
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
++D L +GL + +LS GQ++RL++A + P+ LDEPTT LD
Sbjct: 108 IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLA 167
Query: 95 AMLKA-LARGGRTIVCTIHQP 114
+L+A LARGG ++ T HQ
Sbjct: 168 GLLRAHLARGGIVLLTT-HQD 187
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 65.5 bits (161), Expect = 2e-13
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91
I V L+ +GL LSGG+++R+ +A L PPI+ LDEPT+ LD
Sbjct: 75 IAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQI 134
Query: 92 QCVAMLKALAR-GGRTIVCTIHQP 114
+ + +L+ LAR G+T+V +H
Sbjct: 135 ELLELLRRLARERGKTVVMVLHDL 158
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 66.0 bits (162), Expect = 2e-13
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L+ +GL +LSGGQ++R++IA L NP +M DEPT+ LD + + +
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 97 LKALARGGRTIVCTIHQ 113
+K LA G T+V H+
Sbjct: 178 MKDLAEEGMTMVVVTHE 194
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 66.1 bits (162), Expect = 2e-13
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V + L+ +GL LSGGQK+R++IA L P I+ LDEPT GLD + +
Sbjct: 119 VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL 178
Query: 95 AMLKALAR-GGRTIVCTIH 112
+LK L GG+TI+ H
Sbjct: 179 ELLKKLKEEGGKTIIIVTH 197
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 65.3 bits (160), Expect = 3e-13
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
L+ +GL L LSGG+++R+++A ++ PP++ DEPT LD + ++ + +L
Sbjct: 118 ALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 98 KALARGGRTIVCTIHQPSATIFEMVD 123
L G+TI+ H P + + D
Sbjct: 178 LELNDEGKTIIIVTHDPE--VAKQAD 201
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 66.3 bits (162), Expect = 3e-13
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA 95
+++L+ L + G SGG ++RL IA LI P ++FLDEPTTGLD +
Sbjct: 106 EELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165
Query: 96 MLKALARGGRTIVCTIH 112
++AL G TI+ T H
Sbjct: 166 YIRALKEEGVTILLTTH 182
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 65.3 bits (160), Expect = 3e-13
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V L +GL +LSGG+++R++IA ++++PP++ DEPT LD + + + +
Sbjct: 118 VGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177
Query: 95 AMLKALARGGRTIVCTIHQPS 115
+LK L + G T++ H S
Sbjct: 178 DLLKRLNKRGTTVIVATHDLS 198
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 65.9 bits (161), Expect = 3e-13
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQKKR++IA L P I+ LDEPT+GLD +Q + +L L + G TI+ + H
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 65.7 bits (161), Expect = 4e-13
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V++ L+ +GL LSGG+++R+ IA L PI+ LDEPT+ LD + +
Sbjct: 119 VEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVL 178
Query: 95 AMLKALAR-GGRTIVCTIHQP 114
+L+ L R G T+V +H
Sbjct: 179 ELLRDLNREKGLTVVMVLHDL 199
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 64.2 bits (157), Expect = 6e-13
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 22 RISVDDILDTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79
+ + ++ + +L + L + +H L LSGGQK+RL+IA L+ ++ D
Sbjct: 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPL--SLSGGQKQRLAIAAALLSGKDLLIFD 151
Query: 80 EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
EPT+GLD + + +++ LA G+ ++ H
Sbjct: 152 EPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 64.0 bits (156), Expect = 9e-13
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V L+ +GL L LSGG+++R++IA ++++P I+ DEPT LD ++T + +
Sbjct: 117 VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176
Query: 95 AMLKALARGGRTIVCTIH 112
+LK + + G T+V H
Sbjct: 177 NLLKKINKAGTTVVVATH 194
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 63.4 bits (155), Expect = 1e-12
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
LSGGQ++R+++A L +P ++ LDEPT+ LD + + A+LK+L A+ G T+V H
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 63.8 bits (156), Expect = 1e-12
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+ + L +GL + G+LS GQ++R+++A + P+ LDEP T LD
Sbjct: 111 IWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 95 AMLKALARGGRTIVCTIHQP 114
A++ A A G ++ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 63.8 bits (156), Expect = 1e-12
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++ +++A L+++PPI+ LDEPT+ +D NS + L+ L G +T++ H+P
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRP 199
Query: 115 SATIFEMVDHL 125
S + ++VD +
Sbjct: 200 S--LLDLVDRI 208
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 63.4 bits (155), Expect = 1e-12
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+D++LD +GL S S G K+RL IAL L+ NP ++ LDEPT GLD + +
Sbjct: 107 IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127
++ +L G T++ + H S I ++ D +G+
Sbjct: 167 ELILSLRDQGITVLISSHLLS-EIQKVADRIGI 198
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 63.7 bits (155), Expect = 1e-12
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V D L +GL G LSGGQ++R+ +A L P ++ LDEP TGLD +
Sbjct: 94 VRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT 153
Query: 95 AMLKALARGGRTIVCTIH 112
+ LA G I+ T H
Sbjct: 154 ELFIELAGAGTAILMTTH 171
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 63.3 bits (155), Expect = 2e-12
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 35 VDDILDTIGLV-LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
+++L+ +GL LSGGQ++R++IA LI+NP I+ DEPT LDS + +
Sbjct: 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181
Query: 94 VAMLKALAR-GGRTIVCTIHQP 114
+ +L+ L + G+TI+ H P
Sbjct: 182 LELLRELNKERGKTIIMVTHDP 203
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 63.5 bits (155), Expect = 2e-12
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
L+ +GL + +LSGGQ++R++IA L P ++ DEP LD ++ Q +
Sbjct: 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187
Query: 97 LKALARG-GRTIVCTIHQ 113
LK + + G T++ +HQ
Sbjct: 188 LKRINKEDGITVIINLHQ 205
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 62.9 bits (154), Expect = 3e-12
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGGQ++R++IA L +P +M DEPT+ LD + + ++K LA G T++ H
Sbjct: 135 AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTH 194
Query: 113 Q 113
+
Sbjct: 195 E 195
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 61.2 bits (150), Expect = 5e-12
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA L+ +PPI+ LDE T+ LD + + L+AL G+T++ H+
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRL 155
Query: 115 SATIFEMVDH 124
S TI D
Sbjct: 156 S-TI-RDADR 163
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 61.8 bits (151), Expect = 5e-12
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 19 YSHRISVDDILDTIGL------------VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
+V + LD I VD++L+ + L G LSGG ++R+ IA
Sbjct: 83 VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142
Query: 67 LELIDNPPIMFLDEPTTGLD 86
L+ +P I+ +DEPT GLD
Sbjct: 143 QALVGDPSILIVDEPTAGLD 162
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 61.4 bits (150), Expect = 7e-12
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+ L+ +GL H G LS GQK+R+++A L+ N PI LDEPT LD+ +
Sbjct: 108 IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA 167
Query: 95 AMLKA-LARGGRTIVCTIHQP 114
+++A LA+GG ++ H P
Sbjct: 168 ELIRAHLAQGG-IVIAATHIP 187
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 62.1 bits (151), Expect = 7e-12
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
L +G+ LSGGQ++R++IA L P +M DEPT+ LD + + +
Sbjct: 135 KYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKV 194
Query: 97 LKALARGGRTIVCTIHQ 113
++ LA GRT+V H+
Sbjct: 195 MQDLAEEGRTMVVVTHE 211
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 63.5 bits (154), Expect = 7e-12
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
+ ++GL L L G SGG K++LS A+ LI PP++ LDEPTTG+D + +
Sbjct: 2055 IQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114
Query: 99 ALARGGRTIVCTIH 112
++ R GR +V T H
Sbjct: 2115 SIIREGRAVVLTSH 2128
Score = 47.7 bits (113), Expect = 1e-06
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
++ +L+ GL ++ LSGG +++LS+A+ + + ++ LDEPT+G+D S
Sbjct: 1042 MEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW 1101
Query: 95 AMLKALARGGRTIVCTIHQ 113
+L R GRTI+ + H
Sbjct: 1102 DLLLKY-RSGRTIIMSTHH 1119
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 62.6 bits (153), Expect = 1e-11
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++RL++A L+ P I+ LDE T+ LD + + L + GRT++ H+
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRL 668
Query: 115 S 115
S
Sbjct: 669 S 669
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 61.4 bits (150), Expect = 1e-11
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 49 HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL--AR 102
TL G +LSGGQK+R++IA L+ NP I+ LDE T+ LD+ S V +AL A
Sbjct: 130 DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL-VQ--EALDRAM 186
Query: 103 GGRTIVCTIHQPSATI 118
GRT + H+ S TI
Sbjct: 187 KGRTTIVIAHRLS-TI 201
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 61.7 bits (150), Expect = 2e-11
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
G LSGG K+RL++A L+++P ++ LDEPTTGLD + + L++L G+TI+ T H
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 61.4 bits (149), Expect = 2e-11
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGG K+RL++A LI++P ++ LDEPTTGLD ++ + L++L G+TI+ T H
Sbjct: 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 60.3 bits (147), Expect = 3e-11
Identities = 24/55 (43%), Positives = 41/55 (74%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
+LSGG+K+R++IA ++ NPPI+ LDE T+ LD+++ + A L+ +++G TIV
Sbjct: 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIV 191
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 60.0 bits (146), Expect = 4e-11
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+D++L TIGL + L LS GQK+ L I + L +P ++ LDEP G+ T +
Sbjct: 128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187
Query: 95 AMLKALARGGRTIV 108
+LK+LA +V
Sbjct: 188 ELLKSLAGKHSILV 201
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 59.3 bits (144), Expect = 5e-11
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+D++L+ + L + + S G K+RL IA+ L+++P ++ LDEPT GLD +
Sbjct: 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSN 130
++++ G T++ + H S + ++ DH+G+ S
Sbjct: 165 ELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE 199
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 60.4 bits (147), Expect = 5e-11
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 27 DILDTIGLVDDILDTIGLVLSKHTLCGR-LSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85
L +GL + + + GR LSGG+++RL++A L+ + P+ LDEPT GL
Sbjct: 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL 505
Query: 86 DSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 122
D + Q +A+L A G ++ T + +
Sbjct: 506 DPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 59.5 bits (145), Expect = 5e-11
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L+ +GL +LSGGQK+R+ IA L +NP ++ DE T+ LD +T +
Sbjct: 121 VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180
Query: 95 AMLKAL-ARGGRTIVCTIHQ 113
A+L+ + G TIV H+
Sbjct: 181 ALLRDINRELGLTIVLITHE 200
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 59.5 bits (145), Expect = 6e-11
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
++++L+TIGL L G LS GQK+ L I + L+ +P ++ LDEP G+ T +
Sbjct: 124 IEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183
Query: 95 AMLKALARGGRTIV 108
+LK+LA G ++V
Sbjct: 184 ELLKSLA-GKHSVV 196
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 60.1 bits (146), Expect = 7e-11
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGGQ++RL+IA L+ + PI+ LDE T+ LD+ S A L+ L +G T+V
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 59.2 bits (144), Expect = 7e-11
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
D L+ +G++ + LSGGQ++R++IA L+ P I+ DEP LD S + + +
Sbjct: 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI 189
Query: 97 LKALARG-GRTIVCTIHQ 113
LK + + G T++ +HQ
Sbjct: 190 LKDINQEDGITVIVNLHQ 207
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 59.1 bits (144), Expect = 8e-11
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L+ +GL G LS GQ++RL IA L P ++ LDEP GL+ T + +
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 97 LKAL-ARGGRTIV 108
++ L RGG TI+
Sbjct: 192 IRELRDRGGVTIL 204
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 59.6 bits (144), Expect = 8e-11
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGG K+RL++A LI++P ++ LDEPTTGLD ++ + L++L G+TI+ T H
Sbjct: 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 59.6 bits (145), Expect = 1e-10
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 8/95 (8%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLDE 80
+ + L+ GL D+ + + L T G LSGGQ +RL++A + + P++ LDE
Sbjct: 428 IREALERAGL-DEFVAALPQGL--DTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484
Query: 81 PTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
PT LD+ + + + L+ALA+ GRT++ H+ +
Sbjct: 485 PTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRLA 518
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 57.5 bits (140), Expect = 2e-10
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
+ L +GL + +LS GQ++R+++A + P+ LDEP T +D + A+
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 97 LKALARGGRTIVCTIHQPSATIFEMVDHLGLD 128
L A G ++ T HQ + V L L
Sbjct: 172 LAQHAEQGGMVILTTHQDLPVASDKVRKLRLG 203
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 58.4 bits (141), Expect = 2e-10
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
+V L + +V +H G LSGGQKKR+ +A + ++ LDEP TG+D + +
Sbjct: 122 IVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
Query: 94 VAMLKALARGGRTIVCTIH 112
+++L+ L G+T++ + H
Sbjct: 182 ISLLRELRDEGKTMLVSTH 200
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 57.8 bits (140), Expect = 2e-10
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 35 VDDILDTIGLVLSKHTL---CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91
++++ D +G+ + L G S G +++++IA L+ +PP++ LDEPTTGLD +T
Sbjct: 117 LEELADRLGM---EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR 173
Query: 92 QCVAMLKALARGGRTIVCTIH 112
++ L G+ I+ + H
Sbjct: 174 ALREFIRQLRALGKCILFSTH 194
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 55.4 bits (134), Expect = 2e-10
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT 83
++ L+ +GL D + G LSGGQK+R++IA L+ P ++ LDEPT
Sbjct: 70 AEEALERVGLPDFL---------DREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 57.4 bits (139), Expect = 3e-10
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+ ++ + L+ G S G K++++IA L+ +P I+ LDEPT+GLD + +
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 95 AMLKALARGGRTIVCTIH 112
+K L GR ++ + H
Sbjct: 174 DFIKQLKNEGRAVIFSSH 191
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 58.2 bits (141), Expect = 4e-10
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++R++IA L+ NP I+ DE T+ LD S + ++ + R GRT++ H
Sbjct: 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAH 650
Query: 113 QPSA 116
+ S
Sbjct: 651 RLST 654
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 57.6 bits (139), Expect = 4e-10
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
VD+ L G+ K LS GQKKR++IA L+ P ++ LDEPT GLD ++ +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 95 AMLKALARG-GRTIVCTIH 112
+L + + G TI+ H
Sbjct: 182 KLLVEMQKELGLTIIIATH 200
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 57.7 bits (140), Expect = 5e-10
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 24 SVDDILDTIGLVDDILDTIGLVLSKHTLCG----RLSGGQKKRLSIALELIDNPPIMFLD 79
+ LD GL++ + GL T+ G LSGGQ +RL++A L+ ++ LD
Sbjct: 426 EIIAALDQAGLLEFVPKPDGL----DTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481
Query: 80 EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
EPT LD+ + + L+ LA+ +V T H+
Sbjct: 482 EPTAHLDAETEQIILQALQELAKQKTVLVIT-HRLE 516
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 57.8 bits (140), Expect = 5e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
+LSGGQ++R+SIA L++ ++ DEPT LDS+S + +A+L L G T++ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 113 QP 114
P
Sbjct: 203 DP 204
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 56.9 bits (138), Expect = 5e-10
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
+LSGGQ++R++IA L+ +PPI+ LDE T+ LD+ S A L+ L + T V
Sbjct: 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFV 192
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 57.3 bits (139), Expect = 5e-10
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L+ +GL +LSGGQK+R++IA L +NP I+ DE T+ LD +T +
Sbjct: 122 VAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181
Query: 95 AMLKAL-ARGGRTIVCTIHQP 114
+LK + G TIV H+
Sbjct: 182 ELLKDINRELGLTIVLITHEM 202
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 56.3 bits (136), Expect = 8e-10
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L +GL H LSGGQ++R++IA L P +M DEPT+ LD ++ + +
Sbjct: 119 ELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178
Query: 97 LKALARGGRTIVCTIHQ 113
++ LA G T+V H+
Sbjct: 179 MQDLAEEGMTMVIVTHE 195
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 57.1 bits (138), Expect = 8e-10
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 53 GRLSGGQKKRLSIALEL------IDNPPI--MFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG++ S+AL L + +FLDEP LD + +L+ L G
Sbjct: 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDG 873
Query: 105 RTIV 108
R I+
Sbjct: 874 RQII 877
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 56.6 bits (137), Expect = 8e-10
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQK+R+++A L P + DEPT GLD + + + L + G+TI+ H
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 56.0 bits (135), Expect = 9e-10
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
LSGGQ++R++IA L+ P ++ DEPT LD T Q V+++K LA G T V H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 55.7 bits (135), Expect = 9e-10
Identities = 24/78 (30%), Positives = 47/78 (60%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++LD +GL L +LSGG+++R++IA +++ P ++ DEPT LD + + + +
Sbjct: 118 VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177
Query: 95 AMLKALARGGRTIVCTIH 112
+ + + R G T++ H
Sbjct: 178 RLFEEINRLGTTVLMATH 195
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 56.4 bits (137), Expect = 9e-10
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
LSGG ++R+ IA+ L NP ++ DEPTT LD Q + +LK L R G ++ H
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 56.6 bits (137), Expect = 1e-09
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 27 DILDTIGLVDDILDTI-GLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85
L+ +GL D + GL RLSGG+++RL++A L+ + PI+ LDEPT L
Sbjct: 443 AALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502
Query: 86 DSNSTNQCVAMLKALARGGRTIVCTIHQP 114
D+ + ++ + L A G ++ T H
Sbjct: 503 DAETADELLEDLLAALSGRTVVLIT-HHL 530
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 56.3 bits (136), Expect = 1e-09
Identities = 27/78 (34%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V+++++ +GL +H G+LS G ++R+ +A LI +P ++ LDEPTTGLD N +
Sbjct: 114 VEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIR 173
Query: 95 AMLKALARGGRTIVCTIH 112
++K + + +TI+ + H
Sbjct: 174 NVIKNIGK-DKTIILSTH 190
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 55.5 bits (134), Expect = 1e-09
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 19 YSHRISVDDIL------------DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
+ HR +++I+ + ++L +GL + + RLSGGQ++R++IA
Sbjct: 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156
Query: 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
L P ++ DEPT+ LD + + ++ LA+ RT+V H+ S
Sbjct: 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 55.6 bits (134), Expect = 2e-09
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V L +GL + + LSGG+KKR++IA + P ++ LDEPT GLD + +
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 95 AMLKALA-RGGRTIVCTIHQPSATIFEMVDHL 125
L L G T++ + HQ + EM D++
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLD-LVPEMADYI 208
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 55.5 bits (134), Expect = 2e-09
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ +R++IA L P I+ LDEPT GLD + + + K L + G TIV H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 55.8 bits (135), Expect = 2e-09
Identities = 23/54 (42%), Positives = 38/54 (70%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGG+K+R++IA ++ NPPI+ LDE T+ LD+++ A L+ ++ G T+V
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLV 453
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 54.7 bits (132), Expect = 3e-09
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
SGG+++R++IA I + PI+ LDEPT LD+ + V ++ G ++ H
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 53.8 bits (130), Expect = 3e-09
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN---STNQCVAMLKALARGGRTIVCTI 111
LSGGQ++RL +A L NP I+ LDEP + LD + NQ +A LKA G T +
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIA 153
Query: 112 HQPSATIFEMVD 123
H+P D
Sbjct: 154 HRPETL--ASAD 163
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 55.5 bits (134), Expect = 3e-09
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
LSGGQ++RL+IA L+ NPPI+ LDE T+ LD+ + LK L + GRT + H+
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHR 523
Query: 114 PS 115
S
Sbjct: 524 LS 525
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 55.2 bits (134), Expect = 3e-09
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 53 GR-LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
GR LSGG+++RL IA L+ + P++ LDEPT GLD+ + Q + +L A+ +T++
Sbjct: 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMIT 531
Query: 112 H 112
H
Sbjct: 532 H 532
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 55.3 bits (134), Expect = 3e-09
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIH 112
+LSGG ++R+ IA+ L P ++ DEPTT LD + Q + +LK L R G ++ H
Sbjct: 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213
Score = 50.7 bits (122), Expect = 1e-07
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 35 VDDILDTIGL---VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
V ++L+ +GL L ++ LSGGQ++R++IA L P ++ LDEP + LD
Sbjct: 409 VAELLELVGLPPEFLDRY--PHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 54.2 bits (131), Expect = 4e-09
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
LSGGQ++R++IA L+ P ++ DEPT LD T Q V++++ LA G T V H+
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 54.0 bits (130), Expect = 4e-09
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
+LSGGQK+R++IA LI NP ++ LDE T+ LD+ S Q
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 54.6 bits (131), Expect = 5e-09
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V D L +GL + L +LSGG ++R++IA + P ++ LDEP + LD+N
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177
Query: 95 AMLKALAR--GGRTIVCTIH 112
+ AL TI+C H
Sbjct: 178 EEIAALHEELPELTILCVTH 197
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 54.2 bits (130), Expect = 5e-09
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
LSGGQ++R+SIA L P ++ DEPT+ LD + + +++ LA G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 53.6 bits (130), Expect = 6e-09
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 43/135 (31%)
Query: 48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
+ L G LSGG+++ L+IA L+ P ++ LDEP+ GL
Sbjct: 126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---------------------- 163
Query: 108 VCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 167
P +V+ + ++ L G TI+ + Q + E+ D
Sbjct: 164 -----APK-----IVEEIF----------EAIRELRDEGVTIL-LVEQNARFALEIADRA 202
Query: 168 YVIAEGHCVYKGSSA 182
YV+ G V +G++A
Sbjct: 203 YVLERGRVVLEGTAA 217
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 53.6 bits (129), Expect = 7e-09
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
+L+ +GL +LSGG+++R+++A P ++F DEPT LD + ++ +
Sbjct: 129 ALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188
Query: 97 LKALARG-GRTIVCTIHQPS 115
L AL R G T+V H P
Sbjct: 189 LFALNRERGTTLVLVTHDPQ 208
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 53.5 bits (129), Expect = 8e-09
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++R +A+ L + P++ LDEPTT LD N + + +++ L G+T+V +H
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLH 196
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 53.8 bits (130), Expect = 8e-09
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
LSGG +KR+++A + +P ++FLDEPT+GLD S +++ L G T++ H
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
Query: 114 PSATIFEMVDH 124
++ + D
Sbjct: 206 LD-SLLTIADR 215
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 53.5 bits (129), Expect = 8e-09
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+ ++L +GL L+GG ++R+ IA L+ P ++ LDEPT GLD S
Sbjct: 113 IAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 95 AMLKALAR 102
A ++ALAR
Sbjct: 173 AHVRALAR 180
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 53.1 bits (128), Expect = 9e-09
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V+ +GL L G LSGGQ++R+++A L+ PI+ LDEP + LD + +
Sbjct: 110 VEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEML 169
Query: 95 AMLKALARG-GRTIVCTIHQPS 115
A++ L T++ H P
Sbjct: 170 ALVSQLCDERKMTLLMVTHHPE 191
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 53.9 bits (130), Expect = 1e-08
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGGQ++R++IA ++ + PI+ LDE T+ LD+ S L+ L +G T++
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 52.9 bits (128), Expect = 1e-08
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
LSGGQ++R++IA L NP ++ DEPT+ LD + Q + +LK L
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE 193
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 53.3 bits (128), Expect = 1e-08
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L +GL + LSGGQK+R++IA L NP ++ DE T+ LD +T +
Sbjct: 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180
Query: 95 AMLKALARG-GRTIVCTIHQ 113
+LK + R G TI+ H+
Sbjct: 181 ELLKEINRRLGLTILLITHE 200
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 53.8 bits (130), Expect = 1e-08
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
+LSGG+++RL+IA L+ +PPI+ LDE T+ LD + + A L L +G T +
Sbjct: 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 53.1 bits (127), Expect = 1e-08
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
V D L +GL +++ D L ++ L LSGGQ++RL IA L P ++ LDEPT+
Sbjct: 119 VVDCLQKVGLFEEVKDK----LKQNALA--LSGGQQQRLCIARALAIKPKLLLLDEPTSA 172
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCT 110
LD S+ +LK L+ I+ T
Sbjct: 173 LDPISSGVIEELLKELSHNLSMIMVT 198
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 52.3 bits (126), Expect = 2e-08
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
+LS GQ+ R IA L+ P I+FLDEPT GLD + LK R G T++ T H
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 52.3 bits (126), Expect = 2e-08
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 22 RISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP 81
RISVD++LD +GL +L+++ +LSGG+K+R+++A L P ++ LDEP
Sbjct: 109 RISVDELLDLLGL--------DHLLNRYP--AQLSGGEKQRVALARALAAQPELLLLDEP 158
Query: 82 TTGLDSNSTNQCVAMLKALA 101
+ LD Q + LK +
Sbjct: 159 FSALDRALRLQLLPELKQIK 178
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 52.3 bits (125), Expect = 2e-08
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
VD+ L + +H LS GQKKR++IA L+ + LDEPT GLD Q +
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVD 123
A+++ + G ++ + H I+E+ D
Sbjct: 177 AIIRRIVAQGNHVIISSHDID-LIYEISD 204
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 52.2 bits (126), Expect = 2e-08
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
++L+ +GL + +LSGG ++R++IA L P ++ LDEP LD
Sbjct: 111 AKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 52.5 bits (126), Expect = 2e-08
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
LSGGQK+R++IA L P I+ DEPT GLD ++ + ++ +T+ H
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 52.7 bits (127), Expect = 3e-08
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
LSGGQ++R+++A L +P ++ LDEP + LD +KAL ARG +V T H+
Sbjct: 455 LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT-HR 513
Query: 114 PSAT 117
PS
Sbjct: 514 PSLL 517
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 52.1 bits (125), Expect = 3e-08
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIH 112
++SGGQ ++++I L NP I+ LDEPT GLD S Q + +LK+L +TI+ H
Sbjct: 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 52.4 bits (126), Expect = 3e-08
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 47 SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
++H SGGQ++R++IA LI P ++ LDEPT+ LD Q +A+LK+L
Sbjct: 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471
Score = 45.5 bits (108), Expect = 8e-06
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
+LSGG+++R+ IA+ L+ P ++ DEPTT LD + Q + +L+ L +
Sbjct: 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQ 204
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 51.3 bits (123), Expect = 3e-08
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
++ L +GL + L G LSGG+++R+++A L+ + P++ LDEP LD + +
Sbjct: 109 IEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
Query: 95 AMLKALAR-GGRTIVCTIHQP--SATIFEMVDHL 125
++ L T++ HQP + + + V L
Sbjct: 169 DLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL 202
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 52.1 bits (124), Expect = 3e-08
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 13 QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI-- 70
+ R + L + LV + L+ L +S G K+ L++ L L+
Sbjct: 148 PFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSA 207
Query: 71 -DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
++ +DEP GL + V +LK L+ G ++ T H P
Sbjct: 208 LPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPL 253
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 50.8 bits (122), Expect = 3e-08
Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
R SGG+++RL++A L+ + PI+ LDEPT GLD + Q ++++ + + +T++ H
Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITH 155
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 52.0 bits (125), Expect = 3e-08
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++LD +GL S+ G+LSGGQ++R+++A L +P ++ LDEP + LD+
Sbjct: 115 VAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLR 174
Query: 95 AMLKALAR--GGRTIVCTIHQPSATIFEMVDHL 125
++ L R G TI+ T Q A M D +
Sbjct: 175 TEIRQLQRRLGVTTIMVTHDQEEA--LSMADRI 205
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 51.4 bits (124), Expect = 3e-08
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
++++L+ + + + LSGG+++R+ IA L NP + LDEP G+D +
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVDH 124
++K L G ++ T H T + D
Sbjct: 174 KIIKILKDRGIGVLITDHNVRET-LSITDR 202
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 51.3 bits (123), Expect = 4e-08
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA LI NP I+ DE T+ LD S + + + + GRT++ H+
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRL 197
Query: 115 SA 116
S
Sbjct: 198 ST 199
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 51.9 bits (125), Expect = 4e-08
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 8/66 (12%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL----ARGGRTIVCT 110
LSGGQ++R+++A L +P ++ LDEP + LDS A+ A+ ARGG +V
Sbjct: 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGE---AALAAAILAAKARGGTVVVIA 529
Query: 111 IHQPSA 116
H+PSA
Sbjct: 530 -HRPSA 534
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.5 bits (123), Expect = 5e-08
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
G+LSGGQ++RL IA L P ++ DEPT LD +T + ++ L + TIV H
Sbjct: 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTH 203
Query: 113 QP 114
P
Sbjct: 204 FP 205
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 51.4 bits (123), Expect = 5e-08
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL +A L P I+ LDEPT+ LD +T + +++ L RG TI+ H
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSYTIMIVTH 239
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.1 bits (122), Expect = 6e-08
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
RLSGGQ++RL IA L P ++ LDEPT+ LD +T + +L+ L+ TIV H
Sbjct: 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHN 204
Query: 114 PSATI 118
I
Sbjct: 205 IGQAI 209
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 51.4 bits (123), Expect = 6e-08
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ +R++IA + P I+ LDEP GLD + + + K + G T++ H
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 50.6 bits (122), Expect = 6e-08
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 21 HRISVDDILDTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78
H I + + LD V++ L L + LSGGQ++RL +A L + P ++ L
Sbjct: 108 HGIKLKEELDER--VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLL 165
Query: 79 DEPTTGLDSNST 90
DEPT+ LD ST
Sbjct: 166 DEPTSALDPIST 177
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 51.1 bits (123), Expect = 7e-08
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V++ L+ +GL +LSGGQ++R+++A L+ P ++ LDEP + LD+ Q
Sbjct: 117 VEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176
Query: 95 AMLKALAR--GGRTIVCTIHQPSATIFEMVDHLGL 127
LK L R G + T Q A M D + +
Sbjct: 177 KELKELQRELGITFVYVTHDQEEA--LAMSDRIAV 209
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 50.6 bits (121), Expect = 7e-08
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++LD +GL + +LSGGQ++R++IA L P +M DE T+ LD + + +
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188
Query: 97 LKALA 101
++ LA
Sbjct: 189 IRRLA 193
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 51.4 bits (124), Expect = 7e-08
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LS GQ +RL++A L+ ++ LDEPT LD++S + L A +R T++ T H
Sbjct: 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT-H 542
Query: 113 Q 113
Q
Sbjct: 543 Q 543
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 50.4 bits (121), Expect = 7e-08
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGG+++R++IA L+ NP I+ LDEP + LD + + LK + + V +H
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV--LH 185
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 50.2 bits (121), Expect = 8e-08
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L+ +GL + LSGGQ++R+++A L P ++ LDEP + LD+ +
Sbjct: 111 VRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 95 AMLKAL-ARGGRTIVCTIHQPS 115
LK L G T + H
Sbjct: 171 EELKELQRELGITTIYVTHDQE 192
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 50.4 bits (121), Expect = 8e-08
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL IA L P ++ LDEPT+ LD +T + +++ L + TIV H
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTH 201
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 50.2 bits (120), Expect = 9e-08
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V D +G+ L +LSGGQ++R+++A L+ PI+ LDEP + LD + +
Sbjct: 109 VVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168
Query: 95 AMLKALA-RGGRTIVCTIHQPS 115
A++K L RT++ H S
Sbjct: 169 ALVKQLCSERQRTLLMVTHHLS 190
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 50.0 bits (120), Expect = 9e-08
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LS G ++++ +I +P ++ LDEP +GLD + +++ LAR G+T++ + HQ
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ- 187
Query: 115 SATIFEMVDHLGL 127
+ E+ D + L
Sbjct: 188 MELVEELCDRVLL 200
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 50.0 bits (120), Expect = 1e-07
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
LSGG+++R++IA L++ P ++ DEPT LD+N+ ++ L R T
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 50.9 bits (122), Expect = 1e-07
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 49 HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARG 103
T G +LSGGQK+R++IA L+ P ++ LDE T+ LD+ +C +L+ +R
Sbjct: 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESRSRA 663
Query: 104 GRTIVCTIHQPS 115
RT++ H+ S
Sbjct: 664 SRTVLLIAHRLS 675
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 50.2 bits (120), Expect = 1e-07
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL IA L P I+ +DEPT +D T + +L L + TIV H
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTH 206
Query: 113 QPS 115
P+
Sbjct: 207 SPA 209
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 50.6 bits (122), Expect = 1e-07
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L+ +GL +LSGGQK+R++IA L NP ++ DE T+ LD +T +
Sbjct: 121 VTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 95 AMLKALARG-GRTIVCTIHQ 113
+LK + R G TIV H+
Sbjct: 181 ELLKDINRELGLTIVLITHE 200
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 50.6 bits (121), Expect = 1e-07
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGG+++R+ +A L P++ LDEPT LD N + + +++ L G+T V IH
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIH 197
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 50.6 bits (122), Expect = 1e-07
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L +GL + TL G LS Q++ + IA L + ++ LDEPT L T + +
Sbjct: 128 ELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL 187
Query: 97 LKALARGGRTIV 108
++ L G I+
Sbjct: 188 IRRLKAQGVAII 199
Score = 46.0 bits (110), Expect = 4e-06
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 47 SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
S G LSGG ++++ +A L +P ++ LDEPT G+D + + +++ LA G+
Sbjct: 394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453
Query: 107 IV 108
I+
Sbjct: 454 IL 455
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 50.1 bits (119), Expect = 1e-07
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ +R++IA L P ++ LDEPT GLD + + + + +++ + G+T+V H
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTH 202
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 49.7 bits (118), Expect = 2e-07
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 22 RISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP 81
++ +DDI+++ D+ D I + K L LSGGQ++RL IA L P ++ +DEP
Sbjct: 120 KLEIDDIVESALKDADLWDEIKHKIHKSAL--DLSGGQQQRLCIARALAVKPKVLLMDEP 177
Query: 82 TTGLDSNSTNQCVAMLKALA-RGGRTIVCTIH 112
GLD ++ + +++++L R T+V H
Sbjct: 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 49.7 bits (119), Expect = 2e-07
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V++ L + + + LS GQKKR++IA L +P ++ LDEP LD +
Sbjct: 119 VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178
Query: 95 AMLKALARGGRTIVCTIH 112
+L L G+T++ H
Sbjct: 179 EILDRLHNQGKTVIVATH 196
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 49.6 bits (119), Expect = 2e-07
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQ 113
LSGGQ +R++IA L P ++ LDEPT GLD + + M L + G T V H
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 49.4 bits (118), Expect = 2e-07
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
LSGG+ +R+SIA L +NP ++ LDEPT+ LD ST
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTST 167
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 49.1 bits (117), Expect = 2e-07
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
V+ L + L D++ D + HT LSGGQ++RL IA L NP ++ +DEPT+
Sbjct: 132 VEKSLKDVALWDEVKDRL------HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSA 185
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIH 112
LD ST + ++ L + TIV H
Sbjct: 186 LDPVSTRKIEELILKL-KEKYTIVIVTH 212
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 50.0 bits (119), Expect = 3e-07
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 4/44 (9%)
Query: 50 TLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
TL G +LSGGQK+R+SIA +I NP I+ LDE T+ LD+ S
Sbjct: 571 TLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKS 614
Score = 49.6 bits (118), Expect = 4e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
LSGGQK+R++IA L+ P I+ LDE T+ LDSNS
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 47.8 bits (115), Expect = 3e-07
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGG+K RL++A L++NP ++ LDEPT LD
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 49.6 bits (119), Expect = 3e-07
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
++ L +G + LSGG ++R+++A L++ P ++ LDEPT LD
Sbjct: 135 AEEALLGLGF-PDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
Score = 46.5 bits (111), Expect = 3e-06
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 49 HTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG 103
G LSGG+K RL +A L+ P ++ LDEPT LD + L+AL
Sbjct: 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD-------IESLEALEEA 481
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 49.3 bits (118), Expect = 3e-07
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL----ARGGRTIVC 109
+LS GQ+ R +A L+ P ++FLDEPT GLD N+ + + L T++
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ---ANIREFLKEYNEERQATVLL 212
Query: 110 TIH 112
T H
Sbjct: 213 TTH 215
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 49.6 bits (119), Expect = 3e-07
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
SGGQ++R++IA LI P ++ LDEPT+ LD + Q + +L+ L
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
Score = 46.1 bits (110), Expect = 4e-06
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
LSGGQ++R+ IA+ L + P ++ DEPTT LD Q + +LK L
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 48.9 bits (116), Expect = 3e-07
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 29 LDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
L +GL D + D LS RLSGGQ++ L +A L NP ++ LDEPT+ LD
Sbjct: 144 LTEVGLWDAVKDR----LSDSPF--RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPT 197
Query: 89 STNQCVAMLKALARGGRTIVCT 110
+T + +++LA I+ T
Sbjct: 198 TTEKIEEFIRSLADRLTVIIVT 219
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 48.7 bits (117), Expect = 3e-07
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 22/87 (25%)
Query: 19 YSHRI--SVDDILDTI-----------GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSI 65
Y R+ D LD I V D L L LSGGQ++RL I
Sbjct: 110 YGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSAL---------GLSGGQQQRLCI 160
Query: 66 ALELIDNPPIMFLDEPTTGLDSNSTNQ 92
A L P ++ +DEPT+ LD ST +
Sbjct: 161 ARALAVKPEVLLMDEPTSALDPISTLK 187
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 48.6 bits (117), Expect = 4e-07
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 46/137 (33%)
Query: 48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
++ G LSGG+++ L+IA L+ P ++ LDEP+ GL
Sbjct: 130 RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---------------------- 167
Query: 108 VCTIHQPS--ATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVD 165
P IFE + L+ GG TI+ + Q + E+ D
Sbjct: 168 -----APKIVEEIFEA--------------IKELR--KEGGMTIL-LVEQNARFALEIAD 205
Query: 166 HLYVIAEGHCVYKGSSA 182
YV+ G V G++A
Sbjct: 206 RGYVLENGRIVLSGTAA 222
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 48.4 bits (116), Expect = 4e-07
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
+D +L+ + + + LSGG+++R+ IA L NP + LDEP G+D
Sbjct: 120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 49.2 bits (118), Expect = 5e-07
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 33 GLVDDILDT-IGLVLSKHTLC----GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
GL +DI +G+ HT+ G LSGGQ++RL IA L+ P I+ DE T+ LD
Sbjct: 566 GLAEDIRAMPMGM----HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD- 620
Query: 88 NSTNQCV 94
N T V
Sbjct: 621 NRTQAIV 627
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 48.5 bits (116), Expect = 5e-07
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA--RGGRTIVCTIH 112
LS G+++R+ IA L+ +P ++ LDEP GLD + Q + L+ LA G ++ H
Sbjct: 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
Query: 113 QP 114
Sbjct: 232 HA 233
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 48.0 bits (115), Expect = 6e-07
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113
LSGGQ++R++IA LI P ++ LDEPT+ LD + Q + +L L + G T + H
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201
Query: 114 PSATIFEMVDHL 125
+V+H+
Sbjct: 202 -----LALVEHM 208
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 47.7 bits (113), Expect = 8e-07
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
V++ L L D++ D + L LSGGQ++RL IA L +P I+ DEPT+
Sbjct: 138 VENALRNAALWDEVKDRL------GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSA 191
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIH 112
LD +T ++ L + TI+ H
Sbjct: 192 LDPIATASIEELISDL-KNKVTILIVTH 218
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 46.6 bits (111), Expect = 9e-07
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 49 HTLCGRLSGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
+LSGG+K+ ++AL L + P+ LDE GLD + G
Sbjct: 72 IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKG 131
Query: 105 RTIVCTIHQPSATIFEMVDHL 125
++ H P + E+ D L
Sbjct: 132 AQVIVITHLP--ELAELADKL 150
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 48.1 bits (115), Expect = 9e-07
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++R++IA L+ + PI+ LDE T+ LD+ S A L L + RT + H+
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL 539
Query: 115 SATI 118
S TI
Sbjct: 540 S-TI 542
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 47.7 bits (114), Expect = 1e-06
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQK+R++IA + P I+ LDEPT GLD
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 47.6 bits (114), Expect = 1e-06
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
L+ +GL +H LSGG ++R+ +A L +P I+ +DE + LD
Sbjct: 145 LELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 47.3 bits (112), Expect = 1e-06
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT--IH 112
LSGGQ++RL IA L P I+ +DEPT+ LD ST + ++ L + I+ T +H
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208
Query: 113 QPS----ATIF----EMVDH 124
Q + T F ++V+H
Sbjct: 209 QAARVSDTTSFFLVGDLVEH 228
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 47.6 bits (114), Expect = 1e-06
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQ++RL IA L+ NP I+ LDE T+ LD T + + L R G T + H+
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDP-ETEKII--DDNLRRRGCTCIIVAHRL 672
Query: 115 SATI 118
S TI
Sbjct: 673 S-TI 675
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 47.0 bits (112), Expect = 1e-06
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL IA + P I+ +DEP + LD ST Q + L + TI+ H
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTH 220
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.9 bits (111), Expect = 1e-06
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 24 SVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTT 83
+V+ L + D++ D + H LSGGQ++R+ IA L P ++ LDEPT+
Sbjct: 124 AVETSLKQAAIWDEVKDHL------HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177
Query: 84 GLDSNSTNQCVAMLKALARGGRTIVCT--IHQPS 115
LD S+ Q ML L I+ T +HQ S
Sbjct: 178 ALDPISSTQIENMLLELRDQYTIILVTHSMHQAS 211
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 46.4 bits (110), Expect = 2e-06
Identities = 29/79 (36%), Positives = 38/79 (48%)
Query: 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
L +GL + TL +LS GQKKRL++A + P+ LDEP LD M+
Sbjct: 122 LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMIS 181
Query: 99 ALARGGRTIVCTIHQPSAT 117
A RGG + T H A
Sbjct: 182 AHLRGGGAALVTTHGAYAA 200
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 46.9 bits (112), Expect = 2e-06
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 35 VDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
D++LD +GL S+ R LSGGQ++R+ +A L +PPI+ +DEP LD +
Sbjct: 114 ADELLDLVGLDPSE--YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171
Query: 91 NQCVAMLKALARG-GRTIVCTIH 112
Q +K L + G+TIV H
Sbjct: 172 KQLQEEIKELQKELGKTIVFVTH 194
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.6 bits (110), Expect = 2e-06
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL IA + +P ++ +DEP + LD ST + ++ L + TIV H
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTH 203
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 47.0 bits (112), Expect = 2e-06
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 49 HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
+T G LS GQK+ L++A L+ P I+ LDE T +DS T Q + A R
Sbjct: 467 YTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS-GTEQAIQQALAAVREH 525
Query: 105 RTIVCTIHQPSATIFE----MVDHLG 126
T+V H+ S TI E +V H G
Sbjct: 526 TTLVVIAHRLS-TIVEADTILVLHRG 550
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 47.1 bits (112), Expect = 2e-06
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 6 HGTIWCWQIISAQYSHRISVDDILDTIGLVDD--ILDTIGLVLSKHTLC---------GR 54
G + Q++ +Y + ++ DIL+ + LD + H LC GR
Sbjct: 747 LGKRFLPQVLEVRYKGK-NIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGR 805
Query: 55 ----LSGGQKKRLSIALELI---DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
LSGG+ +RL +A EL+ P + LDEPTTGL ++ + +L++L G T+
Sbjct: 806 PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTV 865
Query: 108 VCTIH 112
V H
Sbjct: 866 VIIEH 870
Score = 32.9 bits (75), Expect = 0.13
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 24 SVDDILDTIGLVDDILDTIGL-VLSKHTLCGRLSGGQKKRLSIA----LELIDNPPIMF- 77
S++++L + IL +GL L+ LSGG+++R ++A ELI I +
Sbjct: 445 SIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIG---ITYI 501
Query: 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LDEP+ GL T++ + ++K L G T++ H
Sbjct: 502 LDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEH 536
Score = 30.2 bits (68), Expect = 0.92
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 55 LSGGQKKRLSIALELIDNP--PIMFL-DEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LS +K + IA L P P +FL DE T LD+ + + L+ L G +++
Sbjct: 1700 LSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759
Query: 112 HQP 114
H P
Sbjct: 1760 HDP 1762
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 46.1 bits (110), Expect = 2e-06
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
G LS G+++ L+IA ++ +P I+ LDE T+ +D+ + L+ L GRT + H
Sbjct: 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAH 196
Query: 113 QPSATI 118
+ S TI
Sbjct: 197 RLS-TI 201
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.1 bits (109), Expect = 3e-06
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
V+ L L D++ D L K L +LSGGQ++RL IA + P ++ +DEPT+
Sbjct: 124 VEWALKKAALWDEVKDD----LKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIH 112
LD ST + ++ L + TIV H
Sbjct: 178 LDPISTLKIEDLMVELKK-EYTIVIVTH 204
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 46.2 bits (109), Expect = 3e-06
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
V++ L +GL ++ D + ++ +LSGGQ++RL+IA L P ++ +DEPT+
Sbjct: 130 VEECLRKVGLWKEVYDRL------NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
+D ++ Q + L + IV H P
Sbjct: 184 IDIVNS-QAIEKLITELKNEIAIVIVSHNP 212
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 46.8 bits (111), Expect = 3e-06
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
RLSGG+++RL+IA ++ N PI+ LDE T+ LD + + + AL R RT H+
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAHR 529
Query: 114 PS 115
S
Sbjct: 530 LS 531
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 46.2 bits (109), Expect = 3e-06
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
L +G+V H LSGGQ++R++IA L+ ++ DEP LD S + L+
Sbjct: 137 LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLR 196
Query: 99 ALARG-GRTIVCTIHQ 113
+ + G T+V T+HQ
Sbjct: 197 DINQNDGITVVVTLHQ 212
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 45.7 bits (109), Expect = 3e-06
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 53 GRLSGGQKKRLSIALEL------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR 105
GR SGG+K S+ + L N I+ LDEPTT LD + + +A + + +
Sbjct: 114 GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK 172
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 45.1 bits (108), Expect = 3e-06
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGG ++++ +A L +P ++ LDEPT G+D + + +++ LA G+ ++
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 46.1 bits (109), Expect = 3e-06
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
V++ L L D++ D + H+ LSGGQ++RL IA L P ++ LDEP +
Sbjct: 141 VEESLTKAALWDEVKDRL------HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA 194
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCT 110
LD S + ++ L I+ T
Sbjct: 195 LDPISNAKIEELITELKEEYSIIIVT 220
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 46.3 bits (110), Expect = 3e-06
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113
LSGG+K+R+ +A +L P + DEPT LD + L+ + G ++V T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 114 P 114
P
Sbjct: 229 P 229
Score = 41.7 bits (98), Expect = 1e-04
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 19 YSHRISVDDILDTIGLVDDILDTIGLVLSKHTL-----------------CGRLSGGQKK 61
Y HR +D++ + IGL ++ D + + + TL LS G++
Sbjct: 377 YPHRTVLDNLTEAIGL--ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434
Query: 62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALARGGRTIVCTIH 112
R+++A LI P I+ LDEPT +D + ++LKA +T + H
Sbjct: 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 45.9 bits (109), Expect = 4e-06
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQ 113
LSGGQ++R+++A L+ P I+ LDEP + LD +Q LK + G T V H
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160
Query: 114 PSATIFEMVDHLGLDSN 130
+ M D + +
Sbjct: 161 QEEAM-TMSDRIAIMRK 176
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 45.2 bits (108), Expect = 4e-06
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
+++L+ +GL ++ +LSGG ++R+++A L +P ++ LDEP + LD
Sbjct: 112 AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 45.6 bits (108), Expect = 4e-06
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L +GL + LSGG+++R++IA L++NP ++ DEPT LD+ + + +
Sbjct: 128 EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187
Query: 97 LKALAR 102
L L R
Sbjct: 188 LGELNR 193
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 45.5 bits (108), Expect = 4e-06
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
LSGGQ++RL IA L P ++ +DEPT+ LD ST
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 45.5 bits (108), Expect = 4e-06
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
+V++ + +GL + G+LSGG K+R++IA L P ++ LDEP LD+
Sbjct: 94 IVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 45.3 bits (107), Expect = 5e-06
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V LD +GL+ +LSGG+++R+ IA +++ P ++ DEPT LD + +
Sbjct: 118 VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGIL 177
Query: 95 AMLKALARGGRTIVCTIH 112
+ + R G T++ H
Sbjct: 178 RLFEEFNRVGVTVLMATH 195
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 45.3 bits (108), Expect = 5e-06
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 17/82 (20%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDE 80
V ++L+ +GL ++ L R LSGGQ++R+ IA L NP ++ DE
Sbjct: 89 VLELLEKVGLPEEFLY-------------RYPHELSGGQRQRIGIARALALNPKLIVADE 135
Query: 81 PTTGLDSNSTNQCVAMLKALAR 102
P + LD + Q + +LK L
Sbjct: 136 PVSALDVSVQAQILNLLKDLQE 157
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 45.7 bits (109), Expect = 5e-06
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 35 VDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
V ++ +GL +L++ L LSGGQ++R+++A L+ P + LDEP + LD+
Sbjct: 114 VKEVAKLLGLEHLLNRKPLQ--LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171
Query: 93 CVAMLKAL-ARGGRTIVCTIH-QPSATIFEMVDHLGLDSN 130
+ +K L R G T + H Q A D + + ++
Sbjct: 172 MRSEIKKLHERLGTTTIYVTHDQVEAMTLA--DRIVVMND 209
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 45.6 bits (108), Expect = 5e-06
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 32 IGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN 91
I +V D+L +G++ + LSGGQK+R++IA L P I+ LDE T+ LD
Sbjct: 121 IKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180
Query: 92 QCVAMLKALAR-GGRTIVCTIH 112
Q + +++ L + T++ H
Sbjct: 181 QILKLIRKLKKKNNLTVISITH 202
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.2 bits (107), Expect = 6e-06
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 29 LDTIGLVDDILDTIGLVLSKHTLCGRL-------SGGQKKRLSIALELIDNPPIMFLDEP 81
LD I V+ L ++GL L RL SGGQ++RL IA + P ++ +DEP
Sbjct: 122 LDEI--VEKSLTSVGLW---EELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEP 176
Query: 82 TTGLDSNSTNQCVAMLKALARGGRTIVCT 110
+ LD +TN +++ L + IV T
Sbjct: 177 CSALDPVATNVIENLIQELKKNFTIIVVT 205
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 45.2 bits (108), Expect = 6e-06
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIV 108
G LSGGQ+++L+IA L+ P ++ LDEPT G+ + +++ L GG I+
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAIL 186
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 45.4 bits (108), Expect = 6e-06
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
+ L+ +GL LSGG ++R+ +A L ++P I+ +DE + LD
Sbjct: 145 ALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 44.3 bits (106), Expect = 6e-06
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LS G+++ + IA L N ++ LDEPT L + +++ L G ++
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 45.2 bits (107), Expect = 6e-06
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGG+++R+ +A L P ++ LDEPT LD + + +A+++ LA G T+V +H
Sbjct: 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALH 195
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 44.9 bits (107), Expect = 6e-06
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
V + LD + L + +LSGGQ++R++IA L++ P ++ LDEP LD
Sbjct: 111 VAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 45.5 bits (108), Expect = 7e-06
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 20 SHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79
RIS + +++ +G IG +L + GRLSGG+K+R++I L+ +P ++ +D
Sbjct: 107 ERRISFERVIELLG--------IGHLLGRLP--GRLSGGEKQRVAIGRALLSSPRLLLMD 156
Query: 80 EPTTGLDSNSTNQCVAMLKALAR 102
EP LD + + L+ L
Sbjct: 157 EPLAALDDPRKYEILPYLERLHA 179
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 45.2 bits (107), Expect = 7e-06
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V D LD+ GL LSGGQ++RL IA + +P ++ +DEP + LD +T++
Sbjct: 170 VKDQLDSSGL---------DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIE 220
Query: 95 AMLKALARGGRTIVCTIH--QPSATI 118
+++ LA T+V H Q +A I
Sbjct: 221 DLIEELAE-EYTVVIVTHNMQQAARI 245
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 44.2 bits (105), Expect = 7e-06
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 55 LSGGQKKRLSIALELIDNPP--IMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGG+ +R+ +A EL PP + LDEP+TGL NQ + ++K L G T++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 113 QPS 115
Sbjct: 148 NLD 150
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 45.0 bits (106), Expect = 7e-06
Identities = 28/79 (35%), Positives = 39/79 (49%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
VD L IGL +H LSGGQ + +++A L P + DE T+ LD +S
Sbjct: 116 RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 94 VAMLKALARGGRTIVCTIH 112
+ +K L G+TIV H
Sbjct: 176 LERIKKLHEKGKTIVYITH 194
Score = 39.2 bits (91), Expect = 6e-04
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 15/112 (13%)
Query: 87 SNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146
S QCVA+ L +P IF+ V + LD +S + +K L G
Sbjct: 138 SGGQGQCVALAGILTM----------EPECLIFDEVTSM-LDPDSGIAVLERIKKLHEKG 186
Query: 147 RTIVCTIHQPSATIFEMVDHLYVIAEGHCVYKGSSANTI--PYLQTIGLHCP 196
+TIV H D + V+ G V +G N + LQT+GL P
Sbjct: 187 KTIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPP 236
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 44.8 bits (106), Expect = 7e-06
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL IA + P ++ +DEP + LD ST + ++ L TI+ H
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTH 208
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 44.8 bits (106), Expect = 8e-06
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL IA + P ++ +DEPT+ LD +T++ +++ L + TIV H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTH 202
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 44.8 bits (106), Expect = 1e-05
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
+L +GL + LS K+ L IA L+ + ++ +DEPT+ L + + ++
Sbjct: 129 MLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 98 KALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLK 140
L + G IV H+ A I + D + + ++ C M+
Sbjct: 189 NQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS 230
Score = 36.3 bits (84), Expect = 0.007
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGG ++++ I+ L P ++ DEPT G+D + + +++ LA G+ I+
Sbjct: 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 44.5 bits (106), Expect = 1e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
SGG ++RL IA L+ +P ++F+DEPT GLD
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 43.7 bits (104), Expect = 1e-05
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGG+++RL+ A L+ P +FLDE T+ LD S ++ +LK L G T++ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP 148
Query: 115 S-ATIFEMVDHL 125
S + V L
Sbjct: 149 SLWKFHDRVLDL 160
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 44.4 bits (105), Expect = 1e-05
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V++ + +GL H L LSGG+++R IA+ + + + LDEPT+ LD +
Sbjct: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187
Query: 95 AMLKALARG-GRTIVCTIH 112
A++ L++ G T++ +H
Sbjct: 188 ALVHRLSQERGLTVIAVLH 206
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 44.5 bits (105), Expect = 1e-05
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 9 IWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALE 68
I+ WQI + + ++D + L D IL T LSGG+K+R+++
Sbjct: 98 IFPWQIRNRRPDRAAALDLLAR-FALPDSILT------KNIT---ELSGGEKQRIALIRN 147
Query: 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIHQPSATI 118
L P I+ LDE T+ LD ++ M+ + + ++ H I
Sbjct: 148 LQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI 198
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 44.3 bits (105), Expect = 1e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
SGG+++R++IA I + PI+ LDEPT LD+ + V +++ G +V H
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 44.2 bits (104), Expect = 1e-05
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV--AMLKALARGGRTIVCTIH 112
LSGGQ++R+ +A L N I+FLD+P + LD + ++ + +LK L RT+V H
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200
Query: 113 Q 113
+
Sbjct: 201 K 201
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 44.2 bits (104), Expect = 1e-05
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
V+ L L ++ D L+K L LSGGQ++RL IA L P ++ +DEP +
Sbjct: 127 VESALKGAALWQEVKDK----LNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIH--QPSATIFEMVDHLGLDSNSTNQCV 136
LD +T + ++ +L R TI H Q + + + D + Q V
Sbjct: 181 LDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 44.4 bits (105), Expect = 1e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
SGG ++RL IA L+ P ++F+DEPT GLD + + + +L+ L R
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 44.7 bits (106), Expect = 1e-05
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG--RTIVCTIH 112
LSGGQK+R+SIA L+ N I+ LD+ + +D + +Q +L L + G RT++ + H
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQ---ILHNLRQWGEGRTVIISAH 508
Query: 113 QPSA 116
+ SA
Sbjct: 509 RLSA 512
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 44.0 bits (104), Expect = 1e-05
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
LSGGQ++R+ IA L +P I+ LDEPT+ LD S + L L
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 44.5 bits (105), Expect = 1e-05
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
++L +GL +H LSGG ++R+ +A L P I+ +DE + LD +
Sbjct: 112 ELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171
Query: 97 LKALARG-GRTIVCTIH 112
LK L +TIV H
Sbjct: 172 LKKLQATLQKTIVFITH 188
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 44.5 bits (106), Expect = 2e-05
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
LSGG+++R+++ L+ P ++ LDEPT LD+ S VA L + L T+V H
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVAVTH 216
Score = 38.0 bits (89), Expect = 0.002
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 51 LCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
G+LSGG++ R+ +A L ++ LDEPT LD V L+AL
Sbjct: 440 KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD-------VETLRAL 482
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 43.8 bits (103), Expect = 2e-05
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH-- 112
LSGGQ++RL IA L P I+ DEPT+ LD ST + ++ L + TIV H
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM 213
Query: 113 QPSATI 118
Q +A I
Sbjct: 214 QQAARI 219
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 44.4 bits (105), Expect = 2e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
GRLSGG +++ +A L+ NP ++ LDEPT G+D + + ++ LA+ G I+
Sbjct: 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
Score = 29.0 bits (65), Expect = 1.9
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
G GGQ++ + IA L ++ LDEP++ L T + +++ L G V H
Sbjct: 140 GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISH 199
Query: 113 Q 113
+
Sbjct: 200 K 200
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 43.9 bits (104), Expect = 2e-05
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 55 LSGGQKKRLSIALEL------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGG+++R+ +A L + + +FLDEPT+ LD + + + + LAR G ++
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195
Query: 109 CTIH 112
+H
Sbjct: 196 AVLH 199
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 44.3 bits (105), Expect = 2e-05
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 47 SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
T G LSGG ++++ I L+ P I+ LDEPT G+D + + ++ LA+ +
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443
Query: 107 IV 108
I+
Sbjct: 444 II 445
Score = 28.5 bits (64), Expect = 2.6
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LS Q + + IA N I+ +DEPT+ L N +++ L G IV H
Sbjct: 133 ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISH 192
Query: 113 QPSATIFEMVD 123
+ IF++ D
Sbjct: 193 K-MEEIFQLCD 202
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 43.8 bits (103), Expect = 2e-05
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIH 112
LSGGQ++R IA+ L IM LDEPTT LD + + +L L R G T+ +H
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 43.9 bits (103), Expect = 2e-05
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
LSGGQ++RL IA L P ++ +DEPT+ LD ST + ++ L I+ T
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 43.4 bits (103), Expect = 2e-05
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG----GRTIVCT 110
LSGGQ++R IA+ L + + LDEP LD V ++K L R G+TIV
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD---MKHSVQIMKILRRLADELGKTIVVV 192
Query: 111 IH 112
+H
Sbjct: 193 LH 194
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 43.5 bits (103), Expect = 2e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
RLSGGQK+R++IA L P I+ LDE T+ LD + + ++ L V +I
Sbjct: 140 RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSI 197
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 43.9 bits (104), Expect = 2e-05
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQ 113
LSGGQ++R+++A L P ++ LDEP LD+ + + K R G T V H
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD 197
Query: 114 PSATIFEMVDHL 125
E+ D +
Sbjct: 198 Q-EEALELADRV 208
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 43.2 bits (102), Expect = 2e-05
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
+L+ +GL L +LSGG+++R+++A P ++F DEPT LD + ++ +
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 97 LKALARG-GRTIVCTIHQP 114
L +L R G T++ H
Sbjct: 189 LFSLNREHGTTLILVTHDL 207
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 43.5 bits (103), Expect = 2e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
LSGGQ++RL IA + P ++ LDEPT+ LD ST
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST 204
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
+LSGGQ++R++IA +++ P ++ LDE + LD Q LKAL R
Sbjct: 144 QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 42.9 bits (101), Expect = 3e-05
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
+ L+ GL + H LSGGQ+ R+++ L+ P + LDEP + LD
Sbjct: 114 AANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 43.1 bits (102), Expect = 3e-05
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA- 95
+L +GL ++ +LSGGQ++R+ IA L NP ++ LDEP LD+ + Q
Sbjct: 111 QMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170
Query: 96 MLKALARGGRTIVCTIHQPSATIF 119
+LK G+ ++ H +F
Sbjct: 171 LLKLWQETGKQVLLITHDIEEAVF 194
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 43.1 bits (102), Expect = 3e-05
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 14 IISAQYSHRI------SVDDIL---DTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKR 62
I+ QY I V ++L D G +D+++D + L VL ++ +LSGG+ +R
Sbjct: 90 IVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI--DQLSGGELQR 147
Query: 63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
++IA L + F DEP++ LD +++ LA ++ H
Sbjct: 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH 197
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 43.2 bits (102), Expect = 3e-05
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
V++ L+ +G+ K RLSGGQK+R++IA + P I+ LDE T+ LD
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLD 172
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 43.2 bits (102), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
SGG ++RL IA L+ P ++F+DEPT GLD + + + +L+ L R
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 199
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 43.1 bits (102), Expect = 3e-05
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
LSGGQ++RL IA + P ++ LDEP + LD ST
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIST 192
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 43.2 bits (101), Expect = 3e-05
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
LSGGQ++RL IA + P ++ +DEPT+ LD +T + ++ L + I+ T
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVT 281
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.9 bits (101), Expect = 3e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
LSGGQ++RL IA L NP ++ +DEP + LD +T + +++ L + I+ T
Sbjct: 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT 205
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 42.9 bits (101), Expect = 4e-05
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH-- 112
LSGGQ++RL IA L +P ++ +DEP + LD +T++ +++ LA T+V H
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM 259
Query: 113 QPSATI 118
Q +A I
Sbjct: 260 QQAARI 265
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 42.8 bits (101), Expect = 4e-05
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
VD+ L +G+ + LSGGQK+R++IA L P + DEPT LD + + V
Sbjct: 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV 184
Query: 95 AMLKALARG-GRTIVCTIH 112
+K L + G TI+ H
Sbjct: 185 NTIKELNKKYGITIILITH 203
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 42.8 bits (101), Expect = 4e-05
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
+ +L +GL ++H +LSGG ++R+ IA L P ++ LDEP LD+ + Q
Sbjct: 112 IAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
Query: 94 VAMLKALAR 102
+L L +
Sbjct: 172 QELLLDLWQ 180
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 42.9 bits (102), Expect = 5e-05
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGG +++L +A EL P ++ +PT GLD + L L G+ ++
Sbjct: 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
Score = 38.3 bits (90), Expect = 0.001
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+ ++ + GL + LS G+++R+ I L ++ LDEPT L ++
Sbjct: 121 IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELF 180
Query: 95 AMLKALARGGRTIV 108
+L+ LA G+TI+
Sbjct: 181 EILRRLAAEGKTII 194
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 42.3 bits (100), Expect = 5e-05
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 20 SHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLD 79
+ R + I +G+ +D+L L G+LSGGQ++R+++A L+ PI+ LD
Sbjct: 105 AQREKLHAIARQMGI-EDLLAR---------LPGQLSGGQRQRVALARCLVREQPILLLD 154
Query: 80 EPTTGLD 86
EP + LD
Sbjct: 155 EPFSALD 161
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 42.7 bits (101), Expect = 6e-05
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 18 QYSHRIS------VDDIL---DTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIA 66
QY I V ++L D G D++++ +GL VL + LSGG+ +R++IA
Sbjct: 168 QYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDV--SELSGGELQRVAIA 225
Query: 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
L+ + + F DEP++ LD +++ LA G+ ++ H
Sbjct: 226 AALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271
Score = 34.6 bits (80), Expect = 0.026
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
LSGG+ +R++IA L + LDEP+ LD
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 42.4 bits (100), Expect = 6e-05
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
L +GL + LSGGQK+R+++A LI P ++ LDEP LD+
Sbjct: 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 42.1 bits (99), Expect = 6e-05
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V+++L+ + L +LSGGQ++R+++A L P ++ LDEP LD+ +
Sbjct: 111 VEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR 170
Query: 95 AMLKAL 100
+ L+ L
Sbjct: 171 SWLRKL 176
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 42.4 bits (100), Expect = 6e-05
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL IA + +P ++ +DEP + LD +T + ++ L R TIV H
Sbjct: 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTH 220
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 42.3 bits (100), Expect = 6e-05
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIH 112
LSGGQK+R++IA L NP I+ DE T+ LD + ++ L + +T++ H
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH 201
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 42.7 bits (101), Expect = 6e-05
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 55 LSGGQKKRLSIALEL---IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ +R+ +A EL + LDEPTTGL + + + +L+ L G T+V
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 112 H 112
H
Sbjct: 890 H 890
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 42.3 bits (99), Expect = 7e-05
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
LSGGQ++RL IA + P ++ +DEP + LD ST Q
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQ 199
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 41.9 bits (99), Expect = 7e-05
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST---NQCVA 95
L+ +GL+ + G L+ GQ++RL IA ++ P I+ LDEP GL+ T ++ +A
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 96 MLK 98
L+
Sbjct: 198 ELR 200
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.9 bits (98), Expect = 7e-05
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
V++ L L D++ D L K L LSGGQ++RL IA + +P ++ +DEP +
Sbjct: 123 VEESLKAAALWDEVKDK----LDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 117
LD ST + ++ L ++ T + AT
Sbjct: 177 LDPISTTKIEDLIHKLKEDYTIVIVTHNMQQAT 209
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 41.8 bits (98), Expect = 9e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
LSGGQ++RL IA L P ++ +DEPT+ LD ST
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPIST 203
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 41.7 bits (98), Expect = 9e-05
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 28 ILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
+LD +GL + D L +LSGGQ +R++IA L P ++ LDE + LD
Sbjct: 133 LLDMVGLRSEDADK---------LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183
Query: 88 NSTNQCVAMLKAL-ARGGRTIVCTIH 112
+ +L+ L G + H
Sbjct: 184 VLQAVILELLRKLQQAFGTAYLFITH 209
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 41.6 bits (98), Expect = 9e-05
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 39 LDTIGL-----VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
L+ +GL VL K+ +LSGG +R+ IAL L+ PP + DEPTT LD
Sbjct: 107 LEAVGLPDPEEVLKKYPF--QLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 42.0 bits (99), Expect = 9e-05
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
SGGQ +R+ IA LI P ++ DEP + LD + Q V +L+ L R
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR 209
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 41.5 bits (98), Expect = 1e-04
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L I +L + +LSGGQ++R+++ ++ P + +DEP + LD+ Q
Sbjct: 114 VAELLQ-IEHLLDRKP--KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 95 AMLKAL-ARGGRTIVCTIH 112
A LK L R G T + H
Sbjct: 171 AELKRLQQRLGTTTIYVTH 189
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 41.4 bits (97), Expect = 1e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGG+++R+ IA L NP + LDEP G+D S +++ L G ++ T H
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 115 SATI 118
T+
Sbjct: 198 RETL 201
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 41.6 bits (97), Expect = 1e-04
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 15 ISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPP 74
+AQ V+ L L D++ D + H LSGGQ++RL IA L P
Sbjct: 114 TTAQSRLDEVVEKSLRQAALWDEVKDNL------HKSGLALSGGQQQRLCIARVLAIEPE 167
Query: 75 IMFLDEPTTGLDSNSTNQCVAMLKALAR 102
++ +DEP + LD ST + +++ L +
Sbjct: 168 VILMDEPCSALDPVSTMRIEELMQELKQ 195
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 41.0 bits (97), Expect = 1e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
SGG+KKR I L+ P + LDEP +GLD ++ ++ L G++++ H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 41.8 bits (98), Expect = 1e-04
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
+LSGG ++R+ IA+ L P ++ DEPTT LD Q + ++K L
Sbjct: 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214
Score = 36.8 bits (85), Expect = 0.006
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
SGGQ++R+ IA L NP ++ DE + LD + Q + +L L R
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 41.7 bits (98), Expect = 1e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
R SGG+K RL +AL + P ++ LDEPT LD
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
Score = 32.8 bits (75), Expect = 0.10
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
SGG + RL++A LI ++ LDEPT LD
Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 41.2 bits (97), Expect = 1e-04
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 27 DILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
L+ +GL + VL + +SGG +R+ IAL L+ P + DEPTT LD
Sbjct: 120 AALEAVGLENA-----ARVLKLYPF--EMSGGMLQRMMIALALLCEAPFIIADEPTTDLD 172
Query: 87 SNSTNQCVAMLKALAR 102
+ + + +L+++ +
Sbjct: 173 VVAQARILDLLESIVQ 188
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 38.7 bits (91), Expect = 1e-04
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 53 GRLSGGQKK-------RLSIALELIDNPP-----IMFLDEPTTGLDSNSTNQCVAMLKA 99
G LSGG+K+ ++A + N ++FLDE LD + + +L+
Sbjct: 21 GTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 41.1 bits (97), Expect = 2e-04
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
LSGGQ++R+ +A L +PP++ +DEP LD + +Q K L + G+TIV H
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 40.9 bits (96), Expect = 2e-04
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQK+R++IA L NP ++ LDE T+ LD
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 40.5 bits (96), Expect = 2e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN----QCVAMLKALARGGRTIVCT 110
LSGGQK+R+S+A + + I LD+P + +D++ C+ L L I+ T
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCI--LGLLLNNKTRILVT 185
Query: 111 IHQ 113
HQ
Sbjct: 186 -HQ 187
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 40.8 bits (96), Expect = 2e-04
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
++L + L D +LD +LSGGQ +R+ +A L P ++ LDE +
Sbjct: 131 ASEMLRAVDLDDSVLDK---------RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSN 181
Query: 85 LDSNSTNQCVAMLKAL 100
LD + +LK L
Sbjct: 182 LDLVLQAGVIRLLKKL 197
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 40.5 bits (95), Expect = 2e-04
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 36 DDILDTIGLVLSKHTL---CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
+DIL + V + H + +LSGG+ +R+ +A L++ P ++ LDEPT G+D N
Sbjct: 99 EDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVN 154
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 40.8 bits (95), Expect = 2e-04
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
LSGGQ++RL IA + P ++ +DEP + LD ST + +++ L I+ T
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 41.1 bits (97), Expect = 2e-04
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 25 VDDILDTIGL------VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFL 78
+ + LD L ++++L +GL LSGG ++ ++ L+ NP ++ L
Sbjct: 123 LQEQLDHHNLWQLENRINEVLAQLGL--DPDAALSSLSGGWLRKAALGRALVSNPDVLLL 180
Query: 79 DEPTTGLD 86
DEPT LD
Sbjct: 181 DEPTNHLD 188
Score = 33.4 bits (77), Expect = 0.077
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGG++ RL +A + ++ LDEPT LD
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 40.7 bits (96), Expect = 2e-04
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
RLSGG +++ +A L+ NP I+ LDEPT G+D + + ++ L + G I+
Sbjct: 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAII 459
Score = 32.6 bits (75), Expect = 0.11
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 38 ILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML 97
+L + L ++ T G L GQ++ + IA L ++ LDEPT L + T + ++
Sbjct: 127 LLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186
Query: 98 KALARGGRTIVC 109
+ L G I C
Sbjct: 187 RDLKAHG--IAC 196
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 40.4 bits (94), Expect = 2e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
SGGQ++R+ IA L P ++ LDEPT+ LD S+++
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 40.2 bits (94), Expect = 2e-04
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELID-----NPP--IMFLDEPTTGL 85
L++D+ + L +LSGG+ +R+ +A ++ NP ++ LDEP L
Sbjct: 104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163
Query: 86 DSNSTNQCVAMLKALARGGRTIVCTIHQPSATI 118
D + +L AL + G IV + H + T+
Sbjct: 164 DVAQQSALDRLLSALCQQGLAIVMSSHDLNHTL 196
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 40.8 bits (96), Expect = 2e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
G LSGG +++++IA L+ P ++ LDEPT G+D
Sbjct: 394 GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
Score = 38.1 bits (89), Expect = 0.002
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVA 95
D +L + L S L G LS G+++ + IA L ++ +DEPT L T
Sbjct: 123 DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182
Query: 96 MLKALARGGRTIVCTIHQPSATIFEMVD 123
+++ L GR IV H+ IFE+ D
Sbjct: 183 VIRELKSQGRGIVYISHR-LKEIFEICD 209
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 40.4 bits (94), Expect = 2e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++RL IA + P ++ LDEP + LD +T + ++ L + TI H
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTH 206
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 40.1 bits (94), Expect = 3e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
LSGGQ++RL IA L P ++ +DEP + LD +T
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 40.5 bits (95), Expect = 3e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
G LSGGQ++RL IA + P ++ +DEP + LD ST
Sbjct: 147 GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST 184
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 40.2 bits (94), Expect = 3e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST 90
LSGGQ++RL IA + P ++ +DEP + LD ST
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIST 190
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 40.3 bits (95), Expect = 3e-04
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
SGGQ++R++IA L+ +P ++ DEP + LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 40.5 bits (95), Expect = 3e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
SGG ++R+ IA+ L+ P ++ DEPTT LD Q + +L L R
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
+SGGQK+R+++A L+ + ++ LDE T+ LD
Sbjct: 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 40.3 bits (95), Expect = 3e-04
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 55 LSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVC 109
SGG+ RL +AL+ I D P + DE TG+ S Q V LK L+R ++C
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGI-SGEVAQAVGKKLKELSR-SHQVLC 228
Query: 110 TIHQP 114
H P
Sbjct: 229 ITHLP 233
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 40.8 bits (96), Expect = 3e-04
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGG+++RL+ A L+ P +FLDE T+ LD + ++ +LK T++ H+P
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA-TVISVGHRP 574
Query: 115 SA-TIFEMVDHLGLD 128
+ L D
Sbjct: 575 TLWNFHSRQLELLDD 589
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 40.4 bits (94), Expect = 3e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS-NSTNQCVA 95
D L +GL H+ LSGG ++R+ +A L NP I+ +DE + LD T
Sbjct: 147 DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206
Query: 96 MLKALARGGRTIVCTIH 112
++K A+ RTIV H
Sbjct: 207 LVKLQAKHQRTIVFISH 223
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 40.1 bits (93), Expect = 3e-04
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
+ I VD+ L + ++ K RLSGGQK+R+++A + P I+ LDE T+ LD
Sbjct: 116 EMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175
Query: 90 TNQCVAML 97
+ + ++
Sbjct: 176 RQEIMRVI 183
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 40.1 bits (94), Expect = 3e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
+LSGGQK+R+++A L P I+ LDEP LD+
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 40.0 bits (94), Expect = 4e-04
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 36 DDILDTIGLVLSKHTL---CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
D ++ +G+ +H L G LSGG+K+R++I L+ P ++ +DEP LD
Sbjct: 110 DQLVALLGI---EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 39.9 bits (94), Expect = 5e-04
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 37 DILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM 96
+ L+ +G+ + T LS GQ++ + IA L N ++ DEPT+ L + Q +
Sbjct: 123 EQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV 182
Query: 97 LKALARGGRTIVCTIHQPSATIFEMVD 123
++ L GR I+ H+ IF + D
Sbjct: 183 IRELRAEGRVILYVSHR-MEEIFALCD 208
Score = 36.8 bits (86), Expect = 0.004
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 47 SKHTLCGRLSGG--QKKRLSIAL-ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG 103
S+ L LSGG QK L L E + ++ LDEPT G+D + ++ ++ LA
Sbjct: 389 SREQLIMNLSGGNQQKAILGRWLSEDMK---VILLDEPTRGIDVGAKHEIYNVIYELAAQ 445
Query: 104 GRTIV 108
G ++
Sbjct: 446 GVAVL 450
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 39.7 bits (93), Expect = 5e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
+LSGG +R+ IA+ + P ++ DEPTT LD Q + +L L +
Sbjct: 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 39.2 bits (92), Expect = 6e-04
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 21/91 (23%)
Query: 39 LDTIGLVLSKH--TLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS-------NS 89
L +GL L G LSGGQ++ LS+ + + P I+ LDE T LD
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 90 TNQCVA------------MLKALARGGRTIV 108
T + V M AL G R I+
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIM 221
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 39.6 bits (93), Expect = 6e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LS G+ ++ + L+ P ++ LDEP GLD S Q +L +L + G T+V
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
Score = 36.5 bits (85), Expect = 0.007
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LS GQ++ I L+ +P ++ LDEP GLD
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 39.3 bits (93), Expect = 7e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAML-KALARGGRTIVCTIH 112
LSGG+++R+++ L++ P ++ LDEPT LD+ S VA L + L T+V H
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES----VAWLEQFLHDYPGTVVAVTH 218
Score = 35.5 bits (83), Expect = 0.013
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
G LSGG++ RL +A L ++ LDEPT LD V L+AL
Sbjct: 443 VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD-------VETLRAL 484
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 39.8 bits (93), Expect = 7e-04
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV--AMLKALARGGRTIVCTIH 112
LSGGQK R+S+A + N + LD+P + LD++ + V L ALA G+T V H
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA--GKTRVLATH 840
Query: 113 Q 113
Q
Sbjct: 841 Q 841
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 38.3 bits (89), Expect = 8e-04
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR----GGRTIVCT 110
LSGG+ +R++IA L+ N DEP+ LD Q + +A+ R G +T +
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI---EQRLNAARAIRRLSEEGKKTALVV 128
Query: 111 IHQPSATIFEMVDHL 125
H ++D+L
Sbjct: 129 EHD-----LAVLDYL 138
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 38.7 bits (90), Expect = 0.001
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
+ G +SGG+++ L+I L+ P ++ LDEP+ GL Q ++ L G TI
Sbjct: 131 RIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTI 190
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 38.4 bits (90), Expect = 0.001
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 55 LSGGQKKRLSIALELI---DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
LSGG+ +R+ +A EL + LDEPTTGL + + + +L+ L G T+V
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 112 HQ 113
H
Sbjct: 230 HN 231
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
++SGGQ++R+++A LI P ++ DEP + LD+N
Sbjct: 136 QISGGQQQRVALARALILKPKVLLFDEPLSNLDAN 170
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 38.7 bits (90), Expect = 0.001
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC-VAMLKALARGGRTIVCTIH 112
+LSGGQ++R+++A L P ++ LDEP LD ++ + ++ L R G T V H
Sbjct: 149 QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 38.6 bits (91), Expect = 0.001
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 18 QYSHRI------SVDDIL---DTIGLVDDILDTIGL--VLSKHTLCGRLSGGQKKRLSIA 66
QY I V ++L D G +D++++ +GL +L + LSGG+ +R++IA
Sbjct: 167 QYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDI--SELSGGELQRVAIA 224
Query: 67 LELIDNPPIMFLDEPTTGLD 86
L+ + F DEPT+ LD
Sbjct: 225 AALLRDADFYFFDEPTSYLD 244
Score = 33.2 bits (77), Expect = 0.086
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGG+ +R++IA L + + LDEP+ LD
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 37.9 bits (89), Expect = 0.001
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAM-LKALARGGRTIVCTIHQ 113
SGG+KKR I L+ P + LDEP +GLD ++ VA + AL GR ++ H
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI-VAEGINALREEGRGVLIITHY 203
Query: 114 P 114
Sbjct: 204 Q 204
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 38.3 bits (89), Expect = 0.002
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGGQK R++ A P I+ LDEP+ LD ++ + L L +GG V +
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL-VLFQGG---VLMVSHD 683
Query: 115 SATIFEMVDHL 125
I VD L
Sbjct: 684 EHLISGSVDEL 694
Score = 33.3 bits (76), Expect = 0.079
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
SGG + R+++A L P ++ LDEPT LD
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 37.9 bits (89), Expect = 0.002
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 27 DILDTIGLVDDILDTIGLVLSKHTLCGR-LSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85
L+ +GL + + G + + G LS GQ++ L +A L+ I+ LDE T +
Sbjct: 111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASV 170
Query: 86 DSNSTNQCVAMLKALARGGRTIVCTIH 112
D + ++ A T++ H
Sbjct: 171 DPETDALIQKTIRE-AFKDCTVLTIAH 196
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 38.1 bits (88), Expect = 0.002
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIH 112
LSGGQK+R+++A + + + LDEPT GLD + + + L + + I+ H
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTH 209
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 38.1 bits (89), Expect = 0.002
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
LSGGQ++R++I L+ P + LDEP + LD+
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 38.1 bits (89), Expect = 0.002
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+ L+ + +V K LS G ++++ +I P ++ LDEP +GLD +
Sbjct: 111 LQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
+ L G TI+ + H+ + E+ D L
Sbjct: 171 DAIFELKEEGATIIFSSHRME-HVEELCDRL 200
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 37.6 bits (88), Expect = 0.002
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
SGG+KKR I + P + LDE +GLD ++ + L R+ + H
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 37.1 bits (87), Expect = 0.003
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 55 LSGGQKKRLSIALELI------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTI 107
LSGG+++R+ +A L P + LDEPT+ LD + + + + LA G +
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 108 VCTIH 112
+ +H
Sbjct: 195 IVVLH 199
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 37.6 bits (88), Expect = 0.003
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 55 LSGGQKKRLSIALELID---NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGG+ +R+ +A EL + LDEPTTGL + + + +L L G T++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVI 879
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 37.2 bits (87), Expect = 0.004
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 55 LSGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVC 109
SGG+ R+ +AL++I D+ P + DE TG+ S Q V L+ L+ + +
Sbjct: 432 ASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGI-SGRVAQAVGKKLRRLSEHHQVLCV 490
Query: 110 TIHQP 114
T H P
Sbjct: 491 T-HLP 494
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels of
palindromic sequences in DNA. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1042
Score = 37.3 bits (86), Expect = 0.004
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 55 LSGGQKKR--LSIALELID--------NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG+ LS+AL L D +F+DE LD +S ++ + +L A+ G
Sbjct: 951 LSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGS 1010
Query: 105 RTIVCTIHQP 114
+ I H P
Sbjct: 1011 KMIGIISHVP 1020
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 36.8 bits (86), Expect = 0.005
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
G LSGG+K+R++I L+ P ++ +DEP LD
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 36.2 bits (84), Expect = 0.005
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
V ++L + L +LSGGQ++R+++A L P ++ LDEP LD+
Sbjct: 117 VHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 169
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 36.8 bits (85), Expect = 0.006
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
S G K RL A+ + NP I+ +DE + D T +C+ + G+TI H S
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 36.6 bits (85), Expect = 0.006
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Query: 55 LSGGQKK------RLSIALELIDNPPIMFLDEPTTGLD 86
LSGG++ RL+++L L N P++ LDEPT LD
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLD 826
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 36.6 bits (85), Expect = 0.007
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
LSGG ++++ IA L +P ++ +DEPT G+D ++ N +++++A
Sbjct: 402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA 450
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 35.7 bits (82), Expect = 0.007
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 52 CGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
CG LS GQK+++++ + + LDEP LD S + ++ G ++ T
Sbjct: 125 CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184
Query: 112 HQ 113
HQ
Sbjct: 185 HQ 186
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 36.5 bits (84), Expect = 0.008
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
+SGGQK+R+S+A + N I D+P + LD++ +Q
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQ 778
Score = 29.9 bits (67), Expect = 0.97
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
S GQ++ LS+A L+ I+ LDE T +D
Sbjct: 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 36.1 bits (83), Expect = 0.009
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
LSGGQK+R+S+A + N I D+P + +D++
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 794
Score = 27.2 bits (60), Expect = 8.6
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LS GQ++ + +A L+ I+ LDE T +D + N + ++ + V TI
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIR--TQFEDCTVLTIAHR 1479
Query: 115 SATIFEMVDHLGLDSNSTNQCVAMLKALARGG 146
TI + + LD + A L + G
Sbjct: 1480 LNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG 1511
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 35.5 bits (82), Expect = 0.011
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
LSGG+ +R++IA L + I LDEP+ LD Q + K + R
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDV---EQRLMASKVIRR 160
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 35.1 bits (81), Expect = 0.014
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 9 IWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALE 68
I+ WQI + Q I +DD L+ L D IL LSGG+K+R+S+
Sbjct: 102 IFPWQIRNQQPDPAIFLDD-LERFALPDTILTK---------NIAELSGGEKQRISLIRN 151
Query: 69 LIDNPPIMFLDEPTTGLD-SNSTN 91
L P ++ LDE T+ LD SN N
Sbjct: 152 LQFMPKVLLLDEITSALDESNKHN 175
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 35.1 bits (81), Expect = 0.017
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
VD+ L+ +GL G LSGG ++R+ +A PI+ +DEP + LD
Sbjct: 144 RVDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 34.9 bits (81), Expect = 0.021
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 58 GQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
G K R+ +A L NP I+ LDEPT LD N+
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINT 190
Score = 31.0 bits (71), Expect = 0.40
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
LSGG+K R+ ++ P ++ +DEPT +D S
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 34.5 bits (80), Expect = 0.023
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 55 LSGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
LSGGQK +++AL D P DE LD+ M+K L+ G + I T
Sbjct: 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFI-TT 217
Query: 111 IHQPSATIFEMVD 123
+P E+++
Sbjct: 218 TFRP-----ELLE 225
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 34.7 bits (80), Expect = 0.024
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 56 SGGQKKRLSIALELI----DNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCT 110
SGG+ R+ +AL+++ + DE G+ S T Q +A L L+ + + T
Sbjct: 442 SGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGV-SGETAQAIAKKLAQLSERHQVLCVT 500
Query: 111 IHQP 114
H P
Sbjct: 501 -HLP 503
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 34.1 bits (79), Expect = 0.031
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 33 GLVDDILDTIGLVLSKHTLCGRLSGG--QKKRLSIALELID---NP--PIMFLDEPTTGL 85
++++ + +GL +LSGG Q+ RL+ + + NP ++ LDEP L
Sbjct: 105 SALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164
Query: 86 DSNSTNQCVAM---LKALARGGRTIVCTIH 112
D Q A+ L L + G +V + H
Sbjct: 165 D---VAQQAALDRLLSELCQQGIAVVMSSH 191
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 33.9 bits (78), Expect = 0.031
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ------PSA 116
L+I + I LDEP L + + +A+L+ LA G I+ H P A
Sbjct: 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGA 196
Query: 117 TIFEMVDHLGL 127
I+E + G+
Sbjct: 197 EIYE-ISESGI 206
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 34.7 bits (80), Expect = 0.033
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
+SGGQK+R+S+A + N + D+P + LD++ Q
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
Score = 27.4 bits (61), Expect = 6.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
S GQ++ LS+A L+ I+ LDE T +D
Sbjct: 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 33.1 bits (75), Expect = 0.038
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 55 LSGGQKKRLSIALELID--NPPIMFLDEPTTGLDSNSTNQ------CVAMLKALARGGRT 106
SG + RL +AL L P ++ LDE T+ LD+ +L + T
Sbjct: 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
Query: 107 IVCTIHQPSATI 118
++ T +
Sbjct: 119 VILTTNDEKDLG 130
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 33.4 bits (77), Expect = 0.039
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 55 LSGGQKKRLSI----ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
LSGG+K ++ AL+ I P LDE LD + + M+K +A+ +
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 111 IHQPSATIFEMVDHL 125
+ +FE D L
Sbjct: 155 TLKK--EMFENADKL 167
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 34.2 bits (78), Expect = 0.039
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 29 LDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSN 88
L + + D + S T LS GQ+KRL++ +++ PI+ DE D +
Sbjct: 449 LQRLEIADKV-KIEDGGFSTTT---ALSTGQQKRLALICAWLEDRPILLFDE--WAADQD 502
Query: 89 STNQCV---AMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
+ +L L R G+TI+ H FE+ D +
Sbjct: 503 PAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQI 540
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 34.2 bits (79), Expect = 0.041
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 34 LVDDILDTIGLVLSKHTLCG------RLSGGQKKRLSIALELIDNPPIMFLDE 80
LV+ L+ + + K L +LS GQKKRL++ L L + I+ LDE
Sbjct: 424 LVEKWLERLKMA-HKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 33.2 bits (76), Expect = 0.063
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
LS GQ++ L +A L+ P ++ LDE T +D +
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 33.2 bits (76), Expect = 0.076
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDE 80
+LS GQKKRL++ L L++ I+ LDE
Sbjct: 448 KLSTGQKKRLALLLALLEERDILVLDE 474
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 32.9 bits (75), Expect = 0.084
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 50 TLCGR----LSGGQKKRLSIALEL---------IDNPPIMFLDEPTTGLDSNSTNQCVAM 96
L GR LSGG+ R+ A L P + LDEPT LD ++ +
Sbjct: 137 ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT 196
Query: 97 LKALARGGRTIVCTI-HQPS 115
++ LAR V I H P+
Sbjct: 197 VRRLARDWNLGVLAIVHDPN 216
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 32.9 bits (75), Expect = 0.096
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTI 111
LS GQK+R +A L + P ++ +DE LD + + + LAR G T++
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565
Query: 112 HQPSATIFEMVDHLGLD 128
H+P E+ + L D
Sbjct: 566 HRP-----EVGNALRPD 577
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 32.5 bits (74), Expect = 0.098
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
L+ GQK+R+++A LI P I+ DE LD + +Q
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQ 187
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 33.1 bits (75), Expect = 0.10
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 53 GRLSGGQKK------RLSIALELIDNPPIMFLDEPTTGLD 86
GR S GQK RL++A N I+ LDEPTT LD
Sbjct: 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLD 1237
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 31.9 bits (73), Expect = 0.15
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
SGG+KKR I + + + LDE +GLD ++ + L +I+ H
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 32.1 bits (73), Expect = 0.15
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 29 LDTIGLVDDILDTIGLVLSKHTLCGR-----LSGGQKKRLSI----ALELIDNPPIMFLD 79
LD D + + I L+ L R SGG+KKR I LE P + LD
Sbjct: 115 LDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE----PELCILD 170
Query: 80 EPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
E +GLD ++ + +L G R+ + H
Sbjct: 171 ESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 31.8 bits (73), Expect = 0.16
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPS 115
S G RL+ ++ P I+ LDE D+ +C+ L L +TIV H
Sbjct: 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG 208
Query: 116 A 116
A
Sbjct: 209 A 209
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 31.7 bits (73), Expect = 0.18
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
S G K RL+ A+ P I+ +DE D+ +C L+ L + G+T++ H P
Sbjct: 143 YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP 202
Query: 115 SA 116
S+
Sbjct: 203 SS 204
>gnl|CDD|201590 pfam01085, HH_signal, Hedgehog amino-terminal signalling domain.
For the carboxyl Hint module, see pfam01079. Hedgehog is
a family of secreted signal molecules required for
embryonic cell differentiation.
Length = 160
Score = 31.0 bits (70), Expect = 0.25
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 72 NPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
NP I+F DE TG D T +C L ALA
Sbjct: 57 NPDIIFKDEEKTGADRLMTQRCKDKLNALA 86
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 31.4 bits (71), Expect = 0.29
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
L+ G+ +++ IA+ L + P ++ DEPT ++ + Q +L L + T + I
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 115 SATIFEMVD 123
I + D
Sbjct: 219 LQMISQWAD 227
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 31.6 bits (73), Expect = 0.32
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 17/64 (26%)
Query: 55 LSGGQKKRLSIALEL----------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG+ +R+ +A EL I LDEPTTGL + + +L L G
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYI-------LDEPTTGLHFEDIRKLLEVLHRLVDKG 883
Query: 105 RTIV 108
T+V
Sbjct: 884 NTVV 887
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 31.0 bits (70), Expect = 0.35
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ----CVAMLKA 99
LSGGQ+ R+S+A + + + LD P LD + + CV L A
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA 208
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 31.4 bits (71), Expect = 0.39
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ+ R+S+A + + + LD P T LD
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
Score = 29.5 bits (66), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LS G K+ + +A ++ I+ LDEP+ LD
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 31.3 bits (71), Expect = 0.40
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 14/64 (21%)
Query: 55 LSGGQKKRLSIALEL-----------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG 103
LSGG+ +S+AL L ID+ +FLDE LDS + + + L AL
Sbjct: 950 LSGGESFLVSLALALALSDLVSHKTRIDS---LFLDEGFGTLDSETLDTALDALDALNAS 1006
Query: 104 GRTI 107
G+TI
Sbjct: 1007 GKTI 1010
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 30.5 bits (69), Expect = 0.57
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 55 LSGGQKKRLSIALELID--NPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LS G + L++A L+ PP++ LDEP T L + ++++ A+ + IV T H
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVST-H 329
Query: 113 QP 114
P
Sbjct: 330 SP 331
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 30.1 bits (68), Expect = 0.59
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL 100
L+ GQK+RL +A LI P ++ DE LD + +Q + ++ L
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLEL 195
>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional.
Length = 431
Score = 30.6 bits (69), Expect = 0.61
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 138 MLKALARGGRTIVCTIHQPSATIFEMVD----HLYVIAEGHCVYKGSSANTIPYL 188
++K LA G V H P + I + VI +G +G S+ +P L
Sbjct: 178 VIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLL 232
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 30.2 bits (68), Expect = 0.62
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
S G + +L ++ + NP I+ +DE + D +C+ + +TI H
Sbjct: 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 0.65
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 15/72 (20%)
Query: 55 LSGGQKKRLSIAL---------ELIDN----PPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
LSGG++ +++L E I+ PP + LDEPT LDS +Q V +++++
Sbjct: 782 LSGGERALFNLSLRCAIYRLLAEGIEGDAPLPP-LILDEPTVFLDSGHVSQLVDLVESMR 840
Query: 102 R-GGRTIVCTIH 112
R G IV H
Sbjct: 841 RLGVEQIVVVSH 852
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 30.6 bits (69), Expect = 0.66
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 55 LSGGQKK------RLSIALELIDNPPIMFLDEPTTGLDSNSTN 91
LSGG+K R+++A L ++ ++ +DEPT LD +
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT 844
>gnl|CDD|223382 COG0305, DnaB, Replicative DNA helicase [DNA replication,
recombination, and repair].
Length = 435
Score = 29.9 bits (68), Expect = 0.93
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 27/121 (22%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
LV +L + + S GRLS + +RL A + PI D P + +
Sbjct: 240 LVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGL-----TITEI 294
Query: 94 VAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGL-DSNSTN----QCVAM----LKALA 143
+ + L ++ ++D+L L + Q V+ LK LA
Sbjct: 295 RSKARRLKLKHNLGLI------------VIDYLQLMTGGKKSENRKQEVSEISRSLKGLA 342
Query: 144 R 144
+
Sbjct: 343 K 343
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 29.1 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 55 LSGGQKKRLSIALELIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGG+ +R+ +A ++ + LDEP+ GL ++ + LK L G T++ H
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 113 QP 114
Sbjct: 198 DE 199
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 29.4 bits (66), Expect = 1.1
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
L+ G+ +++ IA+ L + P ++ DEPT ++ + Q +L L + T + I
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain.
Length = 127
Score = 28.8 bits (65), Expect = 1.1
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 105 RTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKAL 142
R I+ H ++ E++ L N T + KAL
Sbjct: 24 REIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKAL 61
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 29.3 bits (66), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
L+ +GL + + LSGG +R ++A + P ++ DEP G D
Sbjct: 128 LEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
>gnl|CDD|184898 PRK14905, PRK14905, triosephosphate isomerase/PTS system
glucose/sucrose-specific transporter subunit IIB;
Provisional.
Length = 355
Score = 29.2 bits (65), Expect = 1.5
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVA-MLKALARGGRTIVCTIHQPSATIFEMVDH 124
A ELI P I L + D+ + +A LKALA G I IH+ S +++DH
Sbjct: 227 ANELIMKPHIDGLFIGRSAWDAQCFHALIADALKALA--GSKIDPIIHKFSEIAIQLIDH 284
Query: 125 LGLDSN--STNQCVAMLKALAR 144
LG N + C + ++ + R
Sbjct: 285 LGGKDNISALTHCASRIRVMLR 306
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 29.1 bits (65), Expect = 1.9
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 55 LSGGQKKRLSIAL---ELIDNP-----PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
LS G+K ++ +L +NP ++ +D+P + DSN + ++K +
Sbjct: 530 LSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQ 589
Query: 107 IVCTIHQPSATIFEMVDHLGLDSNSTNQ 134
++ H T F L LD N+
Sbjct: 590 VIVLTHN---TYFYRDITLELDLKRYNK 614
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 28.5 bits (64), Expect = 2.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 13 QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72
++ + +R V D L IG+ D LD + L + + R+ K L+I E I+
Sbjct: 54 EMKKEKLVNREKVLDFLRGIGIDPDELDGLELPSTVDVMRERVEFLHKLGLTI--EDINE 111
Query: 73 PPIM 76
P++
Sbjct: 112 YPLV 115
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 28.6 bits (64), Expect = 2.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGG+K+R+++A P LDE T+ + S + M + G T+ H+
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAV---SVDVEGYMYRLCREFGITLFSVSHRK 639
Query: 115 S 115
S
Sbjct: 640 S 640
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 28.0 bits (63), Expect = 2.7
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 55 LSGGQKKRLSIAL-----ELIDNP---PI--MFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG+ S++L E++ N + +F+DE LD + L+ +
Sbjct: 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN 183
Query: 105 RTIVCTIHQP 114
R + H
Sbjct: 184 RMVGVISHVE 193
>gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 414
Score = 28.0 bits (62), Expect = 3.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 44 LVLSKHTLCGRLSG--GQKKRLSIALELIDN--PPIMFLDEPTTGLD 86
LV S ++ G L G G + + + L+D PP + LD+P GLD
Sbjct: 332 LVSSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLD 378
>gnl|CDD|183595 PRK12560, PRK12560, adenine phosphoribosyltransferase; Provisional.
Length = 187
Score = 27.4 bits (61), Expect = 3.7
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 30 DTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72
D + ++DD L T G V++ SGG + +E N
Sbjct: 115 DRVAIIDDTLSTGGTVIALIKAI-ENSGGIVSDVICVIEKTQN 156
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 27.9 bits (62), Expect = 3.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LS G K+ + +A ++ I+ LDEP+ LD
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related
proteins. Cinnamyl alcohol dehydrogenases (CAD),
members of the medium chain dehydrogenase/reductase
family, reduce cinnamaldehydes to cinnamyl alcohols in
the last step of monolignal metabolism in plant cells
walls. CAD binds 2 zinc ions and is NADPH- dependent.
CAD family members are also found in non-plant species,
e.g. in yeast where they have an aldehyde reductase
activity. The medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes, or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 330
Score = 27.7 bits (62), Expect = 4.8
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 18/71 (25%)
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIH 154
A L L RGGR ++ + + + L ++I + H
Sbjct: 241 AALGGLRRGGRIVLVGLP------------------ESPPFSPDIFPLIMKRQSIAGSTH 282
Query: 155 QPSATIFEMVD 165
A + E +D
Sbjct: 283 GGRADLQEALD 293
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 27.3 bits (61), Expect = 5.0
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 55 LSGGQKKRLSIALELI------DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGGQ R +AL LI P+ LDE LD + T M+K +G + IV
Sbjct: 167 LSGGQ--RSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIV 224
>gnl|CDD|234414 TIGR03953, rplD_bact, 50S ribosomal protein L4,
bacterial/organelle. Members of this protein family are
ribosomal protein L4. This model recognizes bacterial
and most organellar forms, but excludes homologs from
the eukaryotic cytoplasm and from archaea [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 188
Score = 27.1 bits (61), Expect = 5.4
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 97 LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCT 152
L AR G+ +V VD L+ T +LK L + ++ T
Sbjct: 98 LSEKAREGKLVV-------------VDDFDLEEPKTKDLAKILKNLGLDKKVLIVT 140
>gnl|CDD|220334 pfam09664, DUF2399, Protein of unknown function C-terminus
(DUF2399). Proteins in this entry are encoded within a
conserved gene four-gene neighborhood found sporadically
in a phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Beta-proteobacteria). Just the
C-terminal region is ioncluded here.
Length = 155
Score = 26.9 bits (60), Expect = 5.6
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 137 AMLKALARGGRTIVCTIHQPSATIFEMVDHLY 168
A L +VCT QPSA ++D L
Sbjct: 33 AAADRLGARCAPLVCTSGQPSAAALILLDRLA 64
Score = 26.5 bits (59), Expect = 8.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 95 AMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
A L +VCT QPSA ++D L
Sbjct: 33 AAADRLGARCAPLVCTSGQPSAAALILLDRL 63
>gnl|CDD|223564 COG0490, COG0490, Putative regulatory, ligand-binding protein
related to C-terminal domains of K+ channels [Inorganic
ion transport and metabolism].
Length = 162
Score = 27.0 bits (60), Expect = 6.0
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 124 HLGLDSNSTNQCVAMLKALARGGRTIVCTIHQ------PSA-TIFEMVDHLYVIAEGHCV 176
+ S + + L G T++ + P T+ E D L VI E +
Sbjct: 91 KIEAGSPFIGKTIGDLNIRQNTGATVIAIVRNEEKILSPGPYTVLEAGDTLVVIGEETGL 150
Query: 177 YK 178
+
Sbjct: 151 KR 152
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 27.1 bits (61), Expect = 6.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ++R+++ ++ P + DEP + LD
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like.
Length = 378
Score = 27.2 bits (60), Expect = 7.0
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 43 GLVLSKHTLCGRLSGGQKKRLSIALELID---NPPIMFLDEPTTGLDSNSTNQCVAMLKA 99
GL LS TL G L GG K + + L+D N IM + T L + N+
Sbjct: 308 GLFLSGRTLKGSLFGGWKPKSDLPS-LVDKYMNKEIMIDEFITHNLSFDEINKAF----E 362
Query: 100 LARGGRTIVCTIHQP 114
L R G+ + C IH P
Sbjct: 363 LMREGKCLRCVIHMP 377
>gnl|CDD|222534 pfam14090, HTH_39, Helix-turn-helix domain. This helix-turn-helix
domain is often found in phage proteins and is likely to
be DNA-binding.
Length = 70
Score = 24.9 bits (55), Expect = 9.6
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 133 NQCVAMLKALARGGR--TIVCT----IHQPSATIFEMVDHLYVI 170
QC +L AL RGG T+ I + +A I E+ Y I
Sbjct: 1 TQCARILAALRRGGSITTLEALRELGITRLAARIHELRARGYRI 44
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 26.6 bits (59), Expect = 9.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 125 LGLDSNSTNQCVAMLKALARGGRTIVCT 152
+G+D +TN CVA+L+ GG+ IV
Sbjct: 5 IGIDLGTTNSCVAVLE----GGKPIVIP 28
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,087,661
Number of extensions: 919707
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1414
Number of HSP's successfully gapped: 460
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)