RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8397
(203 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 84.5 bits (210), Expect = 3e-20
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V+ + GL S G ++L IA L+ NP + LDEPT+GLD + +
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 95 AMLKALARGGRTIVCTIH 112
+LK ++ G TI+ + H
Sbjct: 187 KILKQASQEGLTILVSSH 204
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 77.3 bits (191), Expect = 2e-17
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 13 QIISAQYSHRISVDDIL-----DTIGL-----------VDDILDTIGLVLSKHTLCGRLS 56
+ ++ V D++ +IG+ +L +G+ G LS
Sbjct: 104 HSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLS 163
Query: 57 GGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR--TIVCTIHQP 114
G+K+R+ IA L+ P ++ LDEP GLD + +++L +L+ ++ H
Sbjct: 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223
Query: 115 SATIFEMVDHLGL 127
I + L
Sbjct: 224 E-EITANFSKILL 235
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 71.4 bits (176), Expect = 2e-15
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
+ LD + L LSGGQ++ + IA + ++ LDEPT+ LD + +
Sbjct: 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
Query: 94 VAMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGL 127
+++L LA+ T+V T HQP+ + + + L
Sbjct: 168 LSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLL 201
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 70.2 bits (173), Expect = 3e-15
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+ D L+++ + L G LS G +R+ +A L+ N I LD+P +D +S ++ +
Sbjct: 115 IMDALESVEV-LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 95 AMLKALAR-GGRTIVCTIHQPSATIFEMVDHLGL 127
+ + + G I+ + D
Sbjct: 174 KSILEILKEKGIVIISSRE-----ELSYCDVNEN 202
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 65.7 bits (161), Expect = 3e-13
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 30 DTIGLVDDILDTIGL----VLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGL 85
D + LV ++ +GL + LSGG+K+R++IA ++ P I+ LDEP GL
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPF--FLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169
Query: 86 DSNSTNQCVAMLKALARGGRTIVCTIHQ 113
D + +++ G+T++ H
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISHD 197
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 65.8 bits (160), Expect = 3e-13
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 13 QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL--- 69
+I + + S + V + G L SGG++ L +A L
Sbjct: 211 EIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL----SGGERIALGLAFRLAMS 266
Query: 70 ---IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
++ LDEPT LD + + +++ + ++ H + + DH+
Sbjct: 267 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHV 323
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 64.4 bits (158), Expect = 4e-13
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQP 114
LSGG+++R++IA L + P ++F DEPT LDS +T + + + + GG +IV H+
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 65.4 bits (160), Expect = 6e-13
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 13 QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDN 72
+I S++ + ++L +G+ D+ D ++ LSGG+ +R++IA L+ +
Sbjct: 440 KIDSSKLNSNFYKTELLKPLGI-IDLYD-------RNV--EDLSGGELQRVAIAATLLRD 489
Query: 73 PPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRTIVCTIHQPSATIFEMVDHL 125
I LDEP+ LD ++ L +T + H M+D++
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-----VLMIDYV 538
Score = 61.6 bits (150), Expect = 2e-11
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 13 QIISAQYSHRIS------VDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKR 62
++ QY + V ++L + V + + + ++ L R LSGG+ +R
Sbjct: 178 PVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL-DRELHQLSGGELQR 236
Query: 63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
++IA L+ F DEP++ LD + +++ LA G+ ++
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 65.4 bits (160), Expect = 7e-13
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 14 IISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNP 73
I +++ + ++L +G+ D+ D + LSGG+ +R++IA L+ +
Sbjct: 371 IDASKLNSNFYKTELLKPLGI-IDLYD-------REVNE--LSGGELQRVAIAATLLRDA 420
Query: 74 PIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIV 108
I LDEP+ LD ++ L + +T +
Sbjct: 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Score = 58.1 bits (141), Expect = 2e-10
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 13 QIISAQYSHRIS------VDDIL---DTIGLVDDILDTIGLVLSKHTLCGR----LSGGQ 59
++ QY I V ++L D G +++++ + L + R LSGG+
Sbjct: 108 PVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALEL----ENVLEREIQHLSGGE 163
Query: 60 KKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
+R++IA L+ N F DEP++ LD ++ L+ G++++
Sbjct: 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 65.0 bits (159), Expect = 1e-12
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 18 QYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMF 77
QY S D + + +++ + L + LSGG+ ++L IA L +
Sbjct: 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV 408
Query: 78 LDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI-HQPSATIFEMVDHL 125
LD+P++ LD +K + R + + I H + D++
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD-----LSIHDYI 452
Score = 62.7 bits (153), Expect = 5e-12
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 29 LDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
+D G D++ + + + L + LSGG +RL +A L+ + D+P++
Sbjct: 113 IDERGKKDEVKELLNMT----NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCT 110
LD ++ L + IV
Sbjct: 169 LDVRERMNMAKAIRELLKNKYVIVVD 194
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 63.3 bits (155), Expect = 2e-12
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
VD+ L G+ K LS GQKKR++IA L+ P ++ LDEPT GLD ++ +
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 95 AMLKALAR-GGRTIVCTIHQ 113
+L + + G TI+ H
Sbjct: 184 KLLVEMQKELGITIIIATHD 203
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 62.2 bits (152), Expect = 3e-12
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQ 113
LSGGQ++R++IA L +NPPI+ D+PT LDS + + + +LK L G+T+V H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 114 P 114
Sbjct: 206 I 206
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 63.5 bits (155), Expect = 3e-12
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 24 SVDDILDTIGLVDDILDTIGLV--LSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEP 81
+ D++ + + + + LSGG+ +R++I L L I +DEP
Sbjct: 437 KIRGQFLNPQFQTDVVKPLRIDDIIDQEV--QHLSGGELQRVAIVLALGIPADIYLIDEP 494
Query: 82 TTGLDSNSTNQCVAMLKALARG-GRTIV 108
+ LDS C +++ +T
Sbjct: 495 SAYLDSEQRIICSKVIRRFILHNKKTAF 522
Score = 61.2 bits (149), Expect = 2e-11
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
LSGG+ +R +I + + + DEP++ LD ++++L + ++
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 61.4 bits (150), Expect = 9e-12
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
+LSGG+++R++IA L+ +P I+ DE T+ LDS + ++ L + I+
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLII 209
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 62.4 bits (151), Expect = 1e-11
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
+++ +GL +I+ H+ LSGGQK +L +A P ++ LDEPT
Sbjct: 880 IEEHCSMLGLDPEIVS--------HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIH 112
LD +S A+ KAL ++ H
Sbjct: 932 LDRDS---LGALSKALKEFEGGVIIITH 956
Score = 52.7 bits (126), Expect = 2e-08
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
+ D L G D+++ LSGG K +L++A ++ N I+ LDEPT
Sbjct: 528 IKDKLIEFGFTDEMIAM---------PISALSGGWKMKLALARAVLRNADILLLDEPTNH 578
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIH 112
LD+ + ++ L G T + H
Sbjct: 579 LDTVN---VAWLVNYLNTCGITSITISH 603
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 61.6 bits (150), Expect = 2e-11
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 49 HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL--AR 102
+T G +LSGGQK+R++IA L+ P I+ LDE T+ LD+ S + +AL AR
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK---VVQEALDKAR 1218
Query: 103 GGRTIVCTIHQPSATI 118
GRT + H+ S TI
Sbjct: 1219 EGRTCIVIAHRLS-TI 1233
Score = 59.3 bits (144), Expect = 1e-10
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 49 HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKAL--AR 102
TL G +LSGGQK+R++IA L+ NP I+ LDE T+ LD+ S + AL AR
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEA---VVQAALDKAR 573
Query: 103 GGRTIVCTIHQPSATI 118
GRT + H+ S T+
Sbjct: 574 EGRTTIVIAHRLS-TV 588
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 60.7 bits (148), Expect = 2e-11
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
+LSGG+K+R++IA ++ P I+ LDE T+ LD+++ A L + RT + H+
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHR 248
Query: 114 PSATI 118
S T+
Sbjct: 249 LS-TV 252
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 59.1 bits (144), Expect = 6e-11
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 49 HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN--QCVAMLKALAR 102
T G +LSGGQ++ +++A LI P ++ LD T+ LD+ + Q + ++
Sbjct: 147 DTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ-RLLYESPEW 205
Query: 103 GGRTIVCTIHQPSATI 118
RT++ Q S
Sbjct: 206 ASRTVLLITQQLS-LA 220
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 58.6 bits (143), Expect = 7e-11
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIV 108
++SGGQ++RL+IA + NP I+ LDE T LDS S + L +L +G T+V
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLV 193
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 58.0 bits (141), Expect = 1e-10
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 39 LDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLK 98
LD +GL H LSGGQ +R++IA L P IM DEPT+ LD + ++++K
Sbjct: 144 LDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 99 ALARGGRTIVCTIHQPSATIFEM 121
LA G T+V H EM
Sbjct: 204 QLANEGMTMVVVTH-------EM 219
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 58.1 bits (141), Expect = 1e-10
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 20/92 (21%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDE 80
++L + L ++IL R LS GQ + +L L P I+ LDE
Sbjct: 108 FLEMLKALKLGEEILR-------------RKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154
Query: 81 PTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
P +D+ + +K G+ + H
Sbjct: 155 PFENVDAARRHVISRYIKEY---GKEGILVTH 183
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 57.6 bits (140), Expect = 2e-10
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA-------LELIDNPPIMFLDEPTTGLD 86
L++D+ + L +LSGG+ +R+ +A + ++ LDEP LD
Sbjct: 106 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165
Query: 87 SNSTNQCVAMLKALARGGRTIVCTIH 112
+ +L AL++ G IV + H
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSH 191
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 56.7 bits (138), Expect = 3e-10
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 49 HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
+T+ G LSGGQ++R++IA L++NP I+ DE T+ LD S + + + + +G
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR 195
Query: 105 RTIV 108
I+
Sbjct: 196 TVII 199
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 56.7 bits (138), Expect = 3e-10
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
IL+ + L G LSGGQ K + I L+ NP ++ +DEP G+ +
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 95 AMLKALARGGRTIV 108
+ L G T +
Sbjct: 194 NHVLELKAKGITFL 207
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 56.9 bits (138), Expect = 4e-10
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L +GL + LSGGQK+R++IA L NP ++ D+ T+ LD +T +
Sbjct: 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSIL 203
Query: 95 AMLKAL-ARGGRTIVCTIHQ 113
+LK + R G TI+ H+
Sbjct: 204 ELLKDINRRLGLTILLITHE 223
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 56.4 bits (137), Expect = 5e-10
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
LSGGQ++R+SIA L P ++ DEPT+ LD + + +++ LA G+T+V H
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
Query: 113 QPSATIFEM 121
EM
Sbjct: 212 -------EM 213
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 54.0 bits (130), Expect = 1e-09
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALEL------IDNPPIMFLDEPTTGLDS 87
V + G L SGG++ L +A L ++ LDEPT LD
Sbjct: 41 KVRLFVVWEGKERPLTFL----SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE 96
Query: 88 NSTNQCVAMLKALARGGRTIVCTIH 112
+ + +++ + ++ H
Sbjct: 97 ERRRKLITIMERYLKKIPQVILVSH 121
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 54.9 bits (133), Expect = 3e-09
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 13/68 (19%)
Query: 49 HTLCG----RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTN--QCVAMLKAL-- 100
+T+ G LSGGQK+R++IA L+ NP I+ LDE T+ LD+ + Q +AL
Sbjct: 474 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ-----EALDR 528
Query: 101 ARGGRTIV 108
GRT++
Sbjct: 529 LMDGRTVL 536
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 53.7 bits (130), Expect = 7e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
LSGGQ++R++IA L+ + PI+ LDE T+ LD+ S
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 53.4 bits (129), Expect = 9e-09
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNS 89
LSGGQ++R++IA L+ + P++ LDE T+ LD+ S
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 53.0 bits (128), Expect = 1e-08
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
+LSGGQK+RLSIA ++NPPI+ LDE T+ LD S + L L++ RT
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRT 528
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 49.8 bits (119), Expect = 1e-07
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 55 LSGGQKKRLSIALEL-------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
LSGG++ ++++L L + + LDEPT LD N + + + + + I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 108 VCTIHQPSATIFEMVDHL 125
+ T H + ++ D +
Sbjct: 341 IIT-HHRE--LEDVADVI 355
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 44.5 bits (105), Expect = 7e-06
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 55 LSGGQKKRLSIALEL---------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGR 105
LSGG++ +SI+L + +D F+DE + LD+ + + ++LK L R +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLD---AFFIDEGFSSLDTENKEKIASVLKELERLNK 336
Query: 106 TI 107
I
Sbjct: 337 VI 338
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 42.5 bits (101), Expect = 4e-05
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
SGGQK+RLSIA L+ P ++ LD+ T+ +D
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 42.1 bits (100), Expect = 4e-05
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
V ++ + +G+ RLSGG+++R+++A L+ P ++ LDEP + +D
Sbjct: 107 VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 39.5 bits (93), Expect = 4e-04
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 53 GRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV--AMLKALARGGRT 106
LS GQ++ L+I + NP I+ LDE T+ +D+ T + + AM K + G+T
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK-TEKSIQAAMWKLME--GKT 542
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 38.0 bits (89), Expect = 0.001
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 35 VDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
V ++L + L + R LSGGQ++R+++A L P ++ DEP +D
Sbjct: 126 VRELLRFMRL----ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 37.9 bits (89), Expect = 0.001
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 35 VDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
++ +L+ G+ L GR LSGGQ++R ++A L +P ++ LDEP + LD
Sbjct: 119 IEAMLELTGI----SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 37.9 bits (89), Expect = 0.001
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 35 VDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
V D + + L R LSGG+++R+++A L+ NP I+ LDEP + LD
Sbjct: 108 VLDTARDLKI----EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 37.4 bits (88), Expect = 0.001
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTI 107
L G LSGG+++ L+I L+ P ++ +DEP+ GL ++ +++ + + G TI
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 36.8 bits (86), Expect = 0.002
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST----NQCVAMLKALARGGRTIVCT 110
LSGGQK+R+S+A + N I D+P + +D++ + L +T +
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK--NKTRILV 185
Query: 111 IHQ 113
H
Sbjct: 186 THS 188
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 34.7 bits (81), Expect = 0.015
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 17/64 (26%)
Query: 55 LSGGQKKRLSIALEL----------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG+ +R+ +A EL I LDEPT GL + V +L L G
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYI-------LDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 105 RTIV 108
T++
Sbjct: 859 NTVI 862
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 34.4 bits (80), Expect = 0.021
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 17/64 (26%)
Query: 55 LSGGQKKRLSIALEL----------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG+ +R+ +A EL I LDEPTTGL + + + +L L G
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYI-------LDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 105 RTIV 108
T++
Sbjct: 597 DTVL 600
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 33.9 bits (78), Expect = 0.024
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDS 87
LS G K+ + +A ++ I+ LDEP+ LD
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 33.9 bits (78), Expect = 0.026
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST----NQCVAMLKALARGGRTIVCT 110
LSGGQ+ R+S+A + + + LD P LD + CV K +A +T +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMA--NKTRILV 215
Query: 111 IHQ 113
+
Sbjct: 216 TSK 218
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 33.6 bits (78), Expect = 0.035
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 17/64 (26%)
Query: 55 LSGGQKKRLSIALEL----------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG+ +R+ +A EL I LDEPTTGL + + + +L L G
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYI-------LDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 105 RTIV 108
T++
Sbjct: 899 DTVL 902
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 33.7 bits (78), Expect = 0.041
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 17/64 (26%)
Query: 55 LSGGQKKRLSIALEL----------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG+ +R+ +A EL I LDEPTTGL + + + ++ L G
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYI-------LDEPTTGLHFDDIRKLLNVINGLVDKG 916
Query: 105 RTIV 108
T++
Sbjct: 917 NTVI 920
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 33.6 bits (78), Expect = 0.041
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 55 LSGGQKKRLSIALEL----------IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGG 104
LSGG+ +R+ +A EL + LDEPTTGL + L L G
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYV-------LDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 105 RTIV 108
T++
Sbjct: 784 NTVI 787
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 33.0 bits (76), Expect = 0.049
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSG Q++R+++A L+ +P ++ LDEP + LD
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 32.5 bits (75), Expect = 0.053
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNST----NQCVAMLKALARGGRTIVCT 110
LSGGQ+ R+S+A + + + LD P LD + CV K +A +T +
Sbjct: 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV--CKLMA--NKTRILV 186
Query: 111 IHQ 113
+
Sbjct: 187 TSK 189
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 30.7 bits (70), Expect = 0.18
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 55 LSGGQKKRLSIALE---LIDNP-PIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCT 110
+SGG+K ++A P P DE LD + + ++K ++ + IV T
Sbjct: 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124
Query: 111 IHQPSATIFEMVDHL 125
+ D +
Sbjct: 125 -LRDVM--MANADKI 136
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein
binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Length = 150
Score = 30.4 bits (68), Expect = 0.23
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
L N I+F DE TG D + +C L LA
Sbjct: 37 DLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLA 72
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 30.6 bits (70), Expect = 0.26
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
SGG+KKR I L+ P LDE +GLD
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 30.2 bits (69), Expect = 0.32
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 56 SGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
SGG+KKR I + P + LDE +GLD
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLD 196
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 30.3 bits (69), Expect = 0.36
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ++R++IA L+ P ++ LDEP + LD
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.51
Identities = 26/175 (14%), Positives = 54/175 (30%), Gaps = 50/175 (28%)
Query: 33 GLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQ 92
LV D++ LS+ R + +K + L +++ +L+ P+ D +
Sbjct: 182 VLVGDLIKFSAETLSELI---RTTLDAEKVFTQGLNILE-----WLENPSNTPDKDYLLS 233
Query: 93 C-VAM----LKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGR 147
++ + LA + + LG + + + LK +
Sbjct: 234 IPISCPLIGVIQLAH--YVVTAKL-------------LGF---TPGELRSYLKGATGHSQ 275
Query: 148 TIVCTIHQPSATIFEMVD---HLYVIAEGHCVYKGSSANTIPYLQTIGLHCPQYH 199
+V +A D +V I L IG+ C + +
Sbjct: 276 GLV------TAVAIAETDSWESFFVSV----------RKAITVLFFIGVRCYEAY 314
Score = 30.0 bits (67), Expect = 0.61
Identities = 34/165 (20%), Positives = 52/165 (31%), Gaps = 44/165 (26%)
Query: 49 HTLCGRLSGGQKKRLSIALELIDN--PPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
H L +L L ELI N + P SNS A+ +A+ G
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK-SNS-----ALFRAVGEGNAQ 155
Query: 107 IVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDH 166
+V IF G N T+ L+ L + +V I +
Sbjct: 156 LV--------AIF------GGQGN-TDDYFEELRDLYQTYHVLV------GDLIKFSAET 194
Query: 167 LYVIAEGHC----VY-KG-------SSANTIP---YLQTIGLHCP 196
L + V+ +G + + P YL +I + CP
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich,
autocatalytic cleavage, cell membrane, developmental
protein, disease mutation; 1.44A {Homo sapiens} PDB:
3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A
3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A
2wfr_A 2wg3_A*
Length = 187
Score = 29.4 bits (65), Expect = 0.53
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
L NP I+F DE TG D T +C L +LA
Sbjct: 65 ELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLA 100
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 29.5 bits (67), Expect = 0.79
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ++R+++A L+ P ++ DEP + LD
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion
molecules, cell cycle cell LINE, conserved sequence,
fibronectins; 1.90A {Homo sapiens} PDB: 3n1q_B
Length = 170
Score = 28.5 bits (63), Expect = 1.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 66 ALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA 101
L NP I+F DE +G D T +C + ALA
Sbjct: 57 DLVPNYNPDIIFKDEENSGADRLMTERCKERVNALA 92
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 28.7 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ++R+++A ++ P ++ +DEP + LD
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca
cleavage, DNA damage, DNA repair, DNA replication,
DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Length = 196
Score = 28.3 bits (64), Expect = 1.5
Identities = 5/30 (16%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 117 TIFEMVDHLGLDSNSTNQCVAMLKALARGG 146
++ E+ + + L AL + G
Sbjct: 26 SVREIARRFRITPRGA---LLHLIALEKKG 52
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A
{Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Length = 256
Score = 28.0 bits (63), Expect = 2.0
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 98 KALARGGRTIVCTIHQPSATIFEMVDHLGLD---------SNSTNQCVAMLKALARGG 146
ALA I C + E++ G D N + + L AL
Sbjct: 12 AALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSA 69
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 28.0 bits (63), Expect = 2.0
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 55 LSGGQKKRLSIALELIDNPPIMFLDEPTTGLD 86
LSGGQ++R+++ ++ P + +DEP + LD
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II
aldolase, homoprotocatechuate, aromatic DEGR aromatic
hydrocarbons catabolism; 1.60A {Escherichia coli} PDB:
2v5k_A
Length = 287
Score = 28.1 bits (63), Expect = 2.0
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 98 KALARGGRTIVCTIHQPSATIFEMVDHLGLD---------SNSTNQCVAMLKALARGG 146
AL G I + S+ E++ G D N+ + L+A+A
Sbjct: 32 AALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAPYP 89
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12
protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of
homoprotocatechuate; 1.39A {Escherichia coli} PDB:
2vwt_A
Length = 267
Score = 28.0 bits (63), Expect = 2.2
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 98 KALARGGRTIVCTIHQPSATIFEMVDHLGLD---------SNSTNQCVAMLKALARGG 146
+ L +G I + +A + E+ G D N+ L+A+A
Sbjct: 11 ERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYA 68
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 4.1
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 136 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLY 168
+L+ L +GG +V T + S + + +Y
Sbjct: 491 AEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIY 523
Score = 26.8 bits (59), Expect = 7.0
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 25/92 (27%)
Query: 83 TGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKAL 142
TG S +L+ L +GG +V T + S + +++
Sbjct: 482 TGAGKGSIG--AEVLQGLLQGGAKVVVTTSRFSKQV-----------------TDYYQSI 522
Query: 143 -----ARGGRTIVCTIHQPSAT-IFEMVDHLY 168
A+G IV +Q S + +++ +Y
Sbjct: 523 YAKYGAKGSTLIVVPFNQGSKQDVEALIEFIY 554
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 26.7 bits (59), Expect = 5.3
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 12/86 (13%)
Query: 83 TGLDSNSTNQCVAMLKALARGGRTI---VCTIHQPSA-------TIFEMVDHLGLDSNST 132
T +D + + I I Q S + E++ +L +
Sbjct: 77 TVIDVMPRA--IGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMR 134
Query: 133 NQCVAMLKALARGGRTIVCTIHQPSA 158
M+K LA GG + + +
Sbjct: 135 TAIDNMVKMLAPGGHLVFGSARDATC 160
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 26.5 bits (59), Expect = 6.3
Identities = 7/40 (17%), Positives = 11/40 (27%)
Query: 131 STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI 170
Q A G TI T+ + D + +
Sbjct: 16 GRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYM 55
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 26.3 bits (58), Expect = 9.1
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 95 AMLKALA-RGGRTIVC----TIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTI 149
A LK +A GG + T PS ++ LG + +KA A I
Sbjct: 266 ARLKKIADAGGAICINSIYLTDTTPSPERKAALEALGRAPDMKTATPEAVKAYADKRAAI 325
Query: 150 VCTIHQPSATIFEMVDHL-YVI 170
+ + +V+
Sbjct: 326 DKAHPAARGDFDLYMKSMLHVL 347
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,079,168
Number of extensions: 179956
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 94
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)