RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8397
(203 letters)
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 73.5 bits (180), Expect = 1e-16
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Query: 7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIA 66
G I + ++ + + + IL+ + L G LSGGQ K + I
Sbjct: 103 GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 162
Query: 67 LELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
L+ NP ++ +DEP G+ + + L G T + H+ + +DHL
Sbjct: 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHL 220
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 68.8 bits (168), Expect = 6e-15
Identities = 21/118 (17%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 8 TIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIAL 67
+ ++ + +R + I + + + L L G LSGG+++ L+I
Sbjct: 95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP--RLKERLKQLGGTLSGGEQQMLAIGR 152
Query: 68 ELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
L+ P ++ +DEP+ GL ++ +++ + + G TI+ ++ +
Sbjct: 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG-ALKVAHYG 209
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 68.4 bits (167), Expect = 1e-14
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 8/115 (6%)
Query: 6 HGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKK 61
GTI II ++ L DI +T+ G LSGGQ+
Sbjct: 110 PGTIK-ENIIFGVSYDEYRYKSVVKACQLQQDIT---KFAEQDNTVLGEGGVTLSGGQRA 165
Query: 62 RLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116
R+S+A + + + LD P LD + Q +T + +
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 220
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 67.6 bits (165), Expect = 2e-14
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 48 KHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR-GGRT 106
+ +LSGGQ++R++IA L +NPPI+ D+PT LDS + + + +LK L G+T
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKT 198
Query: 107 IVCTIHQPSA 116
+V H +
Sbjct: 199 VVVVTHDINV 208
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 67.6 bits (165), Expect = 2e-14
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
+ +D I +D+ LDTI LSGGQ++R++IA L+ + PI+ LDE T+
Sbjct: 128 MAYAMDFINKMDNGLDTI-----IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 182
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116
LD+ S A L L + RT + H+ S
Sbjct: 183 LDTESERAIQAALDELQK-NRTSLVIAHRLST 213
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 66.3 bits (162), Expect = 4e-14
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V + + + + +LSGGQ++R+++A ++ P ++ +DEP + LD+
Sbjct: 117 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 95 AMLKALA-RGGRTIVCTIHQPS 115
A +K L + T + H
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQV 198
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 64.0 bits (156), Expect = 3e-13
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
+LSGGQK+RLSIA ++NPPI+ LDE T+ LD S + L L++ RT + H+
Sbjct: 154 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHR 212
Query: 114 PSA 116
S
Sbjct: 213 LST 215
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 61.8 bits (150), Expect = 2e-12
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++L +GL + LSGGQK+R++IA L NP ++ DE T+ LD +T +
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 95 AMLKALAR-GGRTIVCTIHQPSATIFEMVDHL 125
+LK + R G TI+ H+ + + D +
Sbjct: 181 ELLKDINRRLGLTILLITHEM-DVVKRICDCV 211
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 61.2 bits (148), Expect = 3e-12
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 34 LVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQC 93
+V+ + GL S G ++L IA L+ NP + LDEPT+GLD + +
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 94 VAMLKALARGGRTIVCTIHQPSATIFEMVDHLGL 127
+LK ++ G TI+ + H + + D + L
Sbjct: 173 RKILKQASQEGLTILVSSHNMLE-VEFLCDRIAL 205
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 60.6 bits (147), Expect = 5e-12
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 5 NHGTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLV-LSKHTLCGRLSGGQKKRL 63
+H T+ + + +S D + L +G+ ++ LSGGQ++R+
Sbjct: 102 SHMTVLENVMEAPIQVLGLSKHDARE---RALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158
Query: 64 SIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIH 112
SIA L P ++ DEPT+ LD + + +++ LA G+T+V H
Sbjct: 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 207
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 60.3 bits (146), Expect = 5e-12
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 25 VDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTG 84
+ D I + + +TI LSGGQ++R++IA L++NP I+ DE T+
Sbjct: 115 LAGAHDFISELREGYNTI-----VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 169
Query: 85 LDSNSTNQCVAMLKALARGGRTIVCTIHQPSA 116
LD S + + + + + GRT++ H+ S
Sbjct: 170 LDYESEHVIMRNMHKICK-GRTVIIIAHRLST 200
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 59.2 bits (143), Expect = 9e-12
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
+ D L+++ ++ K L G LS G +R+ +A L+ N I LD+P +D +S ++ +
Sbjct: 107 IMDALESVEVLDLKKKL-GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 165
Query: 95 AMLKALARGGRTIVCTIHQ 113
+ + + ++ + +
Sbjct: 166 KSILEILKEKGIVIISSRE 184
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 59.9 bits (145), Expect = 1e-11
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 54 RLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQ 113
++SGGQ++RL+IA + NP I+ LDE T LDS S + L +L + GRT + H+
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHR 197
Query: 114 PSA 116
S
Sbjct: 198 LST 200
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 59.1 bits (143), Expect = 2e-11
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 13 QIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGR----LSGGQKKRLSIALE 68
+ I+ + + ++++I GL T LSGGQ++ +++A
Sbjct: 106 ENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165
Query: 69 LIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALA-RGGRTIVCTIHQPSA 116
LI P ++ LD+ T+ LD+NS Q +L R R+++ S
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSL 214
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 56.9 bits (137), Expect = 1e-10
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 36 DDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI-------DNPPIMFLDEPTTGLDSN 88
+D+ + L +LSGG+ +R+ +A ++ ++ LDEP LD
Sbjct: 107 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 89 STNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
+ +L AL + G IV + H + T+
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTL-RHAHRA 202
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 56.5 bits (136), Expect = 1e-10
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 11 CWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELI 70
I ++ +I V ++ + +GL + LSGGQ++R+++ ++
Sbjct: 99 YDNIAFPLKLRKVPRQEIDQ---RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV 155
Query: 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-GRTIVCTIHQPS 115
P + +DEP + LD+ + A LK L R G T + H
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 53.3 bits (126), Expect = 3e-09
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 58 GQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSAT 117
G RL+++L L ++ LDEPT LD + + +++ + ++ H
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-- 345
Query: 118 IFEMVDHL 125
+ + DH+
Sbjct: 346 LKDAADHV 353
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 50.1 bits (118), Expect = 4e-08
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 47 SKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRT 106
+ + R++ G RL+++L L ++ LDEPT LD + + +++ +
Sbjct: 200 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 259
Query: 107 IVCTIHQPSATIFEMVDHL 125
++ H + + DH+
Sbjct: 260 VILVSHDEE--LKDAADHV 276
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 49.2 bits (117), Expect = 5e-08
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V+ + + + L LSGGQ++R++I L+ P + LDEP + LD+ Q
Sbjct: 111 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 95 AMLKALARG-GRTIVCTIHQPS 115
+ L + GRT++ H
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQV 192
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 43.9 bits (102), Expect = 5e-06
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 56 SGGQKKRLSIALEL----IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTI 111
SGG+K ++AL P LDE LD + + A ++ +
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 112 HQPSATIFEMVDHL 125
+ + +FE D L
Sbjct: 394 LKNT--MFEKSDAL 405
Score = 29.7 bits (65), Expect = 0.27
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 118 IFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHLYVI 170
+ + VD LD + + A ++ + + + +FE D L +
Sbjct: 359 VLDEVD-AALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 42.4 bits (99), Expect = 1e-05
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V D + + LSGG+++R+++A L+ NP I+ LDEP + LD +
Sbjct: 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 95 AMLKALA-RGGRTIVCTIHQPS 115
ML L + T++ H +
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQT 189
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 40.8 bits (95), Expect = 4e-05
Identities = 25/92 (27%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V+++ + + + LSG Q++R+++A L+ +P ++ LDEP + LD+ +
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 95 AMLKALARG-GRTIVCTIHQPSATIFEMVDHL 125
A++K + G T++ H P A IF + D +
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDP-ADIFAIADRV 211
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 38.8 bits (90), Expect = 2e-04
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 35 VDDILDTIGLVLSKHTLCGRLSGGQKKRLSIALELIDNPPIMFLDEPTTGLDSNSTNQCV 94
V ++ + +G+ RLSGG+++R+++A L+ P ++ LDEP + +D + +
Sbjct: 107 VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166
Query: 95 AMLKALARG-GRTIVCTIHQPSATIFEMVDHL 125
L+ + R I+ H + D +
Sbjct: 167 EELRFVQREFDVPILHVTHDLI-EAAMLADEV 197
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus),
pcc7942 [TaxId: 1129]}
Length = 98
Score = 30.5 bits (69), Expect = 0.035
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 92 QCVAMLKALARGGR-TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALA-----RG 145
LA R ++ + + + ++ +G+ ++ + + L+ L +
Sbjct: 12 SLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 71
Query: 146 GRTIVCTIHQP--SATIFEMVDHL 167
GR + + A +DHL
Sbjct: 72 GRHVYYQLQDHHIVALYQNALDHL 95
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 28.1 bits (61), Expect = 0.74
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 70 IDNPPIMFLDEPTTGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMVDHL 125
I P LDE + LD + + +LK ++ + IV T H + E D L
Sbjct: 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT-HNKI--VMEAADLL 291
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 190
Score = 27.3 bits (60), Expect = 0.89
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 96 MLKALARGGR-TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKA 141
++K + R I+ + TI ++ + LG + + LK
Sbjct: 12 VIKVMLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKE 58
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 27.0 bits (59), Expect = 1.5
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 114 PSATIF---EMVDHLGLDSNSTNQCVAMLKALARGGRT 148
P + I M+ H+G + M A+ T
Sbjct: 353 PGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVT 390
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein
PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Length = 194
Score = 26.6 bits (58), Expect = 1.7
Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 92 QCVAMLKALARGGR-TIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKA 141
+ +L L R I+ + + + E+ LG+ + + + +L+
Sbjct: 4 ELNRLLDVLGNETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEE 54
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 148
Score = 25.9 bits (57), Expect = 2.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALAR 102
NP I+F DE TG D T +C L ALA
Sbjct: 41 YNPDIIFKDEENTGADRLMTQRCKDKLNALAI 72
>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 115
Score = 25.2 bits (55), Expect = 3.1
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 14/104 (13%)
Query: 63 LSIALELIDNPPIMFLDEPTTGLDSNSTNQCV-AMLKALARGGRTIVCTIHQPSATIFEM 121
L+I LE+ + I+ L LD ++ + + L + + +
Sbjct: 2 LAIDLEVKQDVLIVRLSGE---LDHHTAEELREQVTDVLENRAIRHI---------VLNL 49
Query: 122 VDHLGLDSNSTNQCVAMLKAL-ARGGRTIVCTIHQPSATIFEMV 164
+DS+ + K + GG+ +VC + +F+M
Sbjct: 50 GQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPAVKRLFDMS 93
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking
protein particle complex 5 {Zebrafish (Brachydanio
rerio) [TaxId: 7955]}
Length = 168
Score = 25.6 bits (56), Expect = 3.2
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 9/56 (16%)
Query: 71 DNPPIMFLDEPTTGLDSNSTNQCVAMLKALARG-----GRTIVCTIHQPSATIFEM 121
+ ++ P NST C A + G T+H T +
Sbjct: 101 EPLINAYISVP----KENSTLNCAAFTGGIVEAILTHSGFPAKVTVHWHKGTTLMI 152
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia
coli [TaxId: 562]}
Length = 168
Score = 25.3 bits (54), Expect = 4.3
Identities = 11/85 (12%), Positives = 20/85 (23%), Gaps = 4/85 (4%)
Query: 105 RTIVCTIHQPSATIFEMVDHLGLDSNSTNQCVAMLKALARGGRTIVCTIHQPSATIFEMV 164
+ A + D + + + L R G + E+
Sbjct: 77 EVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVF 136
Query: 165 DHLYVIAEGHCVYKGSSANTIPYLQ 189
+ + GS IP Q
Sbjct: 137 NLIM----KRRAIAGSMIGGIPETQ 157
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 25.1 bits (54), Expect = 5.5
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 98 KALARGGRTIVCTIHQPSATIFEMVDHLGLD---------SNSTNQCVAMLKALARGGRT 148
ALA I C + E++ G D N + + L AL
Sbjct: 9 AALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASA 68
Query: 149 IVCTIHQPSATIFEMV 164
V + I + +
Sbjct: 69 PVVRVPTNEPVIIKRL 84
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
{Escherichia coli [TaxId: 562]}
Length = 347
Score = 24.9 bits (54), Expect = 8.9
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 7 GTIWCWQIISAQYSHRISVDDILDTIGLVDDILDTIGLVLSKHTLCGR 54
T+ +++ A S+D + +++ +IG+ L T+
Sbjct: 143 NTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAA 190
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 750,274
Number of extensions: 31872
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 46
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.4 bits)