Query psy8399
Match_columns 167
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 17:39:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ter_A Tertiapin; toxin; NMR { 5.0 1.1E+02 0.0038 17.9 -0.6 10 156-165 2-11 (26)
2 3kxe_A Toxin protein PARE-1; c 4.7 6.6E+02 0.023 16.0 3.1 18 142-160 83-100 (110)
3 1nvp_C Transcription initiatio 3.3 4.8E+02 0.016 17.8 1.4 9 155-163 35-43 (76)
4 1nh2_C Transcription initiatio 3.3 4.8E+02 0.016 18.0 1.4 9 155-163 37-45 (79)
5 3brd_A LIN-12 and GLP-1 phenot 3.1 4.1E+02 0.014 23.5 1.2 8 155-162 205-212 (477)
6 1dc1_A Bsobi restriction endon 2.3 7.5E+02 0.026 21.0 1.8 20 141-161 195-218 (323)
7 3ld7_A LIN0431 protein; DUF131 2.3 5E+02 0.017 17.6 0.6 14 151-164 73-86 (101)
8 3iag_C Recombining binding pro 2.3 6E+02 0.02 22.2 1.2 8 155-162 160-167 (422)
9 3mp2_A Non-structural protein 2.1 2.2E+03 0.077 16.4 4.9 37 124-160 167-206 (211)
10 1nnv_A Hypothetical protein HI 2.0 6.5E+02 0.022 18.4 0.9 21 144-165 75-96 (110)
No 1
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=4.98 E-value=1.1e+02 Score=17.86 Aligned_cols=10 Identities=60% Similarity=1.045 Sum_probs=8.2
Q ss_pred Eeeeeeeccc
Q psy8399 156 LCLFNRILIS 165 (167)
Q Consensus 156 lclfnrilis 165 (167)
||-.|||+|.
T Consensus 2 lcncnriiip 11 (26)
T 1ter_A 2 LCNCNRIIIP 11 (26)
T ss_dssp CCCTTSSSCC
T ss_pred cccCCcEech
Confidence 7888999884
No 2
>3kxe_A Toxin protein PARE-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=4.68 E-value=6.6e+02 Score=16.03 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=15.1
Q ss_pred EEEEeeeecCceeEEeeee
Q psy8399 142 YTLFYGIRNRNVNVLCLFN 160 (167)
Q Consensus 142 ytlfygirnrnvnvlclfn 160 (167)
|.+||- ....|-|+.++.
T Consensus 83 Y~I~Y~-~~~~V~IlrV~h 100 (110)
T 3kxe_A 83 HVVFYR-VGVRVEIIRVLH 100 (110)
T ss_dssp EEEEEE-ESSSEEEEEEEE
T ss_pred EEEEEE-eCCEEEEEEEEE
Confidence 899999 888888887764
No 3
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=3.28 E-value=4.8e+02 Score=17.84 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=7.2
Q ss_pred EEeeeeeec
Q psy8399 155 VLCLFNRIL 163 (167)
Q Consensus 155 vlclfnril 163 (167)
|||+|.+|-
T Consensus 35 vlC~ydKV~ 43 (76)
T 1nvp_C 35 VVCQYDKIH 43 (76)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 789998774
No 4
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=3.27 E-value=4.8e+02 Score=17.99 Aligned_cols=9 Identities=33% Similarity=1.217 Sum_probs=7.1
Q ss_pred EEeeeeeec
Q psy8399 155 VLCLFNRIL 163 (167)
Q Consensus 155 vlclfnril 163 (167)
|||+|.+|-
T Consensus 37 vlC~ydKV~ 45 (79)
T 1nh2_C 37 MLCLYDKVT 45 (79)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 789998764
No 5
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=3.12 E-value=4.1e+02 Score=23.52 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=6.3
Q ss_pred EEeeeeee
Q psy8399 155 VLCLFNRI 162 (167)
Q Consensus 155 vlclfnri 162 (167)
.+||||||
T Consensus 205 ~VaLFNRl 212 (477)
T 3brd_A 205 KVALFNRL 212 (477)
T ss_dssp EEEEEECS
T ss_pred EEEeeeee
Confidence 46789987
No 6
>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic enzyme, degenerate DNA recognition, hydrolase/DNA complex; HET: DNA; 1.70A {Geobacillus stearothermophilus} SCOP: c.52.1.11
Probab=2.32 E-value=7.5e+02 Score=21.04 Aligned_cols=20 Identities=50% Similarity=0.946 Sum_probs=12.1
Q ss_pred eEEEEeeee----cCceeEEeeeee
Q psy8399 141 MYTLFYGIR----NRNVNVLCLFNR 161 (167)
Q Consensus 141 mytlfygir----nrnvnvlclfnr 161 (167)
--||+|-+- +.||. +||||-
T Consensus 195 ~RtLiyN~tVPiVkkNID-icLfn~ 218 (323)
T 1dc1_A 195 HRTLMYNITVSLVKKNVD-ICLFNC 218 (323)
T ss_dssp EEEEEEEEEETTTTEEEE-EEEEES
T ss_pred ceeEEEEecchhhcCccc-eEEecC
Confidence 446777543 44443 799983
No 7
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=2.29 E-value=5e+02 Score=17.61 Aligned_cols=14 Identities=14% Similarity=0.622 Sum_probs=8.9
Q ss_pred CceeEEeeeeeecc
Q psy8399 151 RNVNVLCLFNRILI 164 (167)
Q Consensus 151 rnvnvlclfnrili 164 (167)
.+--++||=||++|
T Consensus 73 ~Gq~IVCLPnklvI 86 (101)
T 3ld7_A 73 AGDTIVCLPHKVFV 86 (101)
T ss_dssp TTCEEEETTTTEEE
T ss_pred CCCEEEEcCCEEEE
Confidence 34456777777765
No 8
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=2.27 E-value=6e+02 Score=22.18 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=6.4
Q ss_pred EEeeeeee
Q psy8399 155 VLCLFNRI 162 (167)
Q Consensus 155 vlclfnri 162 (167)
.++|||||
T Consensus 160 ~VaLFNRl 167 (422)
T 3iag_C 160 KVALFNRL 167 (422)
T ss_dssp EEEEEECS
T ss_pred EEEEeecc
Confidence 56889987
No 9
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=2.10 E-value=2.2e+03 Score=16.41 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=28.7
Q ss_pred CCC-CcceeEEEEecCceeEE--EEeeeecCceeEEeeee
Q psy8399 124 TGN-NNRHYSMYINRNHSMYT--LFYGIRNRNVNVLCLFN 160 (167)
Q Consensus 124 tgn-nnrhysmyinrnhsmyt--lfygirnrnvnvlclfn 160 (167)
+|. ..-||-.+....-.|+- -++.|++..++.+|+-+
T Consensus 167 ~G~~~~GHY~~~~~~~~~~vDG~~~~~~~~~~~~~i~~~~ 206 (211)
T 3mp2_A 167 TGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFIN 206 (211)
T ss_dssp ESCTTTCEEEEEETTTTEEEETTEEECCCCSCEEEEEEEE
T ss_pred EcCCCCceEEEEecccceEEeCCceeEcccCccceEEEee
Confidence 555 67899999888877775 35788888999988754
No 10
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F, structural genomics, unknown function; NMR {Haemophilus influenzae} SCOP: d.17.7.1
Probab=2.02 E-value=6.5e+02 Score=18.43 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=13.6
Q ss_pred EEeeeec-CceeEEeeeeeeccc
Q psy8399 144 LFYGIRN-RNVNVLCLFNRILIS 165 (167)
Q Consensus 144 lfygirn-rnvnvlclfnrilis 165 (167)
+.-|+-+ .+ -+=-+|-|+|||
T Consensus 75 V~IGL~n~~~-~iddvFAR~Lis 96 (110)
T 1nnv_A 75 VWVGLVNEQD-EMDDVFAKFLIS 96 (110)
T ss_dssp EEEECCCTTC-CCSCEEEEEEEC
T ss_pred eEEeccCCcc-hHHHHHHHHHhc
Confidence 4556665 33 333589999998
Done!