Query psy8399
Match_columns 167
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 17:39:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8399.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8399hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ja1a3 c.25.1.4 (A:519-678) N 9.1 39 0.0028 21.8 0.4 17 141-157 41-57 (160)
2 d1nvpc_ b.56.1.1 (C:) Large ch 4.5 1.6E+02 0.012 17.3 1.4 9 155-163 6-14 (47)
3 d1dc1a_ c.52.1.11 (A:) Restric 3.7 2E+02 0.015 22.5 1.8 18 142-160 196-213 (319)
4 d2vvpa1 c.121.1.1 (A:3-158) Al 3.1 1.9E+02 0.014 19.4 1.0 23 141-163 91-113 (156)
5 d1nh2c_ b.56.1.1 (C:) Large ch 3.0 2.5E+02 0.018 17.0 1.4 9 155-163 17-25 (59)
6 d2c42a2 c.36.1.12 (A:786-1232) 2.8 2.4E+02 0.017 22.3 1.4 15 149-163 195-209 (447)
7 d1nn4a_ c.121.1.1 (A:) Alterna 2.8 2.1E+02 0.015 19.4 0.9 14 150-163 112-125 (159)
8 d1nnva_ d.17.7.1 (A:) Hypothet 2.8 2.7E+02 0.02 18.6 1.5 23 143-165 71-93 (107)
9 d1g5aa1 b.71.1.1 (A:555-628) A 2.4 2.9E+02 0.021 15.8 1.2 7 154-160 20-26 (74)
10 d1m7xa2 b.71.1.1 (A:623-728) 1 2.2 7.2E+02 0.052 14.6 3.2 24 136-160 11-34 (106)
No 1
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.13 E-value=39 Score=21.80 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=12.3
Q ss_pred eEEEEeeeecCceeEEe
Q psy8399 141 MYTLFYGIRNRNVNVLC 157 (167)
Q Consensus 141 mytlfygirnrnvnvlc 157 (167)
--.||||.|++....++
T Consensus 41 ~~~L~~G~R~~~~d~~y 57 (160)
T d1ja1a3 41 ETLLYYGCRRSDEDYLY 57 (160)
T ss_dssp CEEEEEEESCTTTCCTT
T ss_pred CEEEEEecCCccccHHH
Confidence 34699999988765543
No 2
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.46 E-value=1.6e+02 Score=17.32 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=7.4
Q ss_pred EEeeeeeec
Q psy8399 155 VLCLFNRIL 163 (167)
Q Consensus 155 vlclfnril 163 (167)
|||+|.+|.
T Consensus 6 vlc~ydKV~ 14 (47)
T d1nvpc_ 6 VVCQYDKIH 14 (47)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 789998874
No 3
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.71 E-value=2e+02 Score=22.52 Aligned_cols=18 Identities=39% Similarity=0.944 Sum_probs=10.4
Q ss_pred EEEEeeeecCceeEEeeee
Q psy8399 142 YTLFYGIRNRNVNVLCLFN 160 (167)
Q Consensus 142 ytlfygirnrnvnvlclfn 160 (167)
|-+---|-+.||. +||||
T Consensus 196 yn~~vpivkkNvD-icLfn 213 (319)
T d1dc1a_ 196 YNITVSLVKKNVD-ICLFN 213 (319)
T ss_dssp EEEEETTTTEEEE-EEEEE
T ss_pred EeeccccccCccc-eEEec
Confidence 3333344455554 79998
No 4
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.06 E-value=1.9e+02 Score=19.39 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=15.2
Q ss_pred eEEEEeeeecCceeEEeeeeeec
Q psy8399 141 MYTLFYGIRNRNVNVLCLFNRIL 163 (167)
Q Consensus 141 mytlfygirnrnvnvlclfnril 163 (167)
.++.....+--|.|||||=-|++
T Consensus 91 ~~~A~~ar~hNnaNVL~lGa~~~ 113 (156)
T d2vvpa1 91 VQTAALAREHNNAQLIGIGGRMH 113 (156)
T ss_dssp HHHHHHHHHTTCCSEEEEEGGGS
T ss_pred HHHHHHHHHhcCCcEEEEcceec
Confidence 33334444556899999987765
No 5
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.04 E-value=2.5e+02 Score=17.02 Aligned_cols=9 Identities=33% Similarity=1.217 Sum_probs=7.3
Q ss_pred EEeeeeeec
Q psy8399 155 VLCLFNRIL 163 (167)
Q Consensus 155 vlclfnril 163 (167)
|||+|.+|.
T Consensus 17 vlc~yDKV~ 25 (59)
T d1nh2c_ 17 MLCLYDKVT 25 (59)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 899998774
No 6
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Probab=2.81 E-value=2.4e+02 Score=22.27 Aligned_cols=15 Identities=20% Similarity=0.394 Sum_probs=12.4
Q ss_pred ecCceeEEeeeeeec
Q psy8399 149 RNRNVNVLCLFNRIL 163 (167)
Q Consensus 149 rnrnvnvlclfnril 163 (167)
|+.||+|||+-|.+.
T Consensus 195 rg~nit~ivlDNe~Y 209 (447)
T d2c42a2 195 SGEDVNVFVMDTEVY 209 (447)
T ss_dssp TTCSCEEEEEECSSB
T ss_pred cCCCceEEEEcCccc
Confidence 678899999998764
No 7
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=2.79 E-value=2.1e+02 Score=19.39 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=10.2
Q ss_pred cCceeEEeeeeeec
Q psy8399 150 NRNVNVLCLFNRIL 163 (167)
Q Consensus 150 nrnvnvlclfnril 163 (167)
--|.|||||=-|++
T Consensus 112 HNnaNVL~lGar~~ 125 (159)
T d1nn4a_ 112 HNDTNVLAFGSRVV 125 (159)
T ss_dssp HHCCCEEEEETTTB
T ss_pred hcCCcEEEecceec
Confidence 34788999877764
No 8
>d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus influenzae [TaxId: 727]}
Probab=2.79 E-value=2.7e+02 Score=18.59 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=15.9
Q ss_pred EEEeeeecCceeEEeeeeeeccc
Q psy8399 143 TLFYGIRNRNVNVLCLFNRILIS 165 (167)
Q Consensus 143 tlfygirnrnvnvlclfnrilis 165 (167)
.+.-|+-+.+=..=-+|-|||||
T Consensus 71 EV~IGL~~~~de~ddvFAR~Lis 93 (107)
T d1nnva_ 71 EVWVGLVNEQDEMDDVFAKFLIS 93 (107)
T ss_dssp EEEEECCCTTCCCSCEEEEEEEC
T ss_pred eEEEeecCccchHHhHhhhheec
Confidence 34567766555555689999998
No 9
>d1g5aa1 b.71.1.1 (A:555-628) Amylosucrase {Neisseria polysaccharea [TaxId: 489]}
Probab=2.41 E-value=2.9e+02 Score=15.81 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=5.4
Q ss_pred eEEeeee
Q psy8399 154 NVLCLFN 160 (167)
Q Consensus 154 nvlclfn 160 (167)
.|||+.|
T Consensus 20 ~ilvi~N 26 (74)
T d1g5aa1 20 ALLAFGN 26 (74)
T ss_dssp TEEEEEE
T ss_pred eEEEEEe
Confidence 4888887
No 10
>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]}
Probab=2.17 E-value=7.2e+02 Score=14.61 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=11.2
Q ss_pred ecCceeEEEEeeeecCceeEEeeee
Q psy8399 136 NRNHSMYTLFYGIRNRNVNVLCLFN 160 (167)
Q Consensus 136 nrnhsmytlfygirnrnvnvlclfn 160 (167)
+...|++...=.-.. .=.|||+||
T Consensus 11 d~~~sV~af~R~~~~-~~~~vvV~N 34 (106)
T d1m7xa2 11 DKERSVLIFVRRDKE-GNEIIVASN 34 (106)
T ss_dssp ETTTTEEEEEEECTT-CCEEEEEEE
T ss_pred CCCCCEEEEEEeCCC-CCEEEEEEe
Confidence 445555544322222 123777776
Done!