RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8399
         (167 letters)



>gnl|CDD|220096 pfam09052, SipA, Salmonella invasion protein A.  Salmonella
           invasion protein A is an actin-binding protein that
           contributes to host cytoskeletal rearrangements by
           stimulating actin polymerisation and counteracting
           F-actin destabilising proteins. Members of this family
           possess an all-helical fold consisting of eight
           alpha-helices arranged so that six long, amphipathic
           helices form a compact fold that surrounds a final,
           predominantly hydrophobic helix in the middle of the
           molecule.
          Length = 674

 Score = 29.6 bits (66), Expect = 0.89
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 76  YHAWNDNRNHSMYDNTRNNNRHYTMHNNRNHSMYNTRNI-NRNHSMYKNTGNNNRHYSMY 134
           YH    N N S YDN   +N          +     R+  N  H   +N   +    +  
Sbjct: 302 YHINIHNDNRS-YDNRVFDN------RGDTYLGGARRHYDNSYHENSENDAQSPTSQTND 354

Query: 135 INRN 138
           ++RN
Sbjct: 355 LSRN 358


>gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde
           dehydrogenase family 14 and related proteins.  Aldehyde
           dehydrogenase family 14 (ALDH14), isolated mainly from
           the mitochondrial outer membrane of Saccharomyces
           cerevisiae (YMR110C) and most closely related to the
           plant and animal ALDHs and fatty ALDHs family 3 members,
           and similar fungal sequences, are present in this CD.
          Length = 436

 Score = 28.7 bits (65), Expect = 1.5
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 7/39 (17%)

Query: 21  MYDNTRNNNRHYAMYINRNHYMYNTRNNNRIHPMYDNTR 59
            Y    N +  Y   +N  H+       NR+  + D T+
Sbjct: 275 FYPGGANASPDYTRIVNPRHF-------NRLKSLLDTTK 306


>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
          Length = 545

 Score = 27.4 bits (61), Expect = 3.8
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 9  MYHAWYNNRNHSMYDNTRNNNRHYAMYINR-----NHYMYNTRNNNRIHPMYDNTRNNNR 63
          M     ++ N S+     NN   Y  Y +      N+   +  N     P Y N      
Sbjct: 1  MRSTDGSSSNGSVSSGPSNNYNSYGPYPDSSNPYGNYQANHQDNYGGFRPGYGNYSGGYG 60

Query: 64 HYTMHNNRNHSM 75
           + M++  + ++
Sbjct: 61 GFGMNSYGSSTL 72


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.129    0.421 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,997,520
Number of extensions: 676634
Number of successful extensions: 812
Number of sequences better than 10.0: 1
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 70
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)