RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8399
(167 letters)
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
papillomavirus type 16 [TaxId: 333760]}
Length = 455
Score = 30.4 bits (69), Expect = 0.099
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 62 NRHYTMHNNRNHSMYHAWNDNRNHSMYDNTRNNNRHYTMHNNRNHSMYNTRNIN 115
N+ Y + + H+ W + ++ D TR+ N + + + Y N
Sbjct: 289 NKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFK 342
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 29.7 bits (66), Expect = 0.16
Identities = 7/119 (5%), Positives = 22/119 (18%), Gaps = 2/119 (1%)
Query: 5 RNHSMYHAWYNNRNHSMYDNTRNNNRHYAMYINRNHYMYNTRNNNRIHPMYDNTRNNNRH 64
++ + A + ++ + + N
Sbjct: 93 KHPEPFFALAKELYPGQFKP--TICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDL 150
Query: 65 YTMHNNRNHSMYHAWNDNRNHSMYDNTRNNNRHYTMHNNRNHSMYNTRNINRNHSMYKN 123
H S + + + + T S+ + S+
Sbjct: 151 VEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPAR 209
>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain,
VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Length = 121
Score = 26.6 bits (58), Expect = 1.0
Identities = 10/79 (12%), Positives = 21/79 (26%)
Query: 35 YINRNHYMYNTRNNNRIHPMYDNTRNNNRHYTMHNNRNHSMYHAWNDNRNHSMYDNTRNN 94
Y YM R ++ T++ + + D +++Y +
Sbjct: 27 YAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSL 86
Query: 95 NRHYTMHNNRNHSMYNTRN 113
T Y R+
Sbjct: 87 KPEDTATYYCAAGGYELRD 105
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 24.9 bits (54), Expect = 5.6
Identities = 9/68 (13%), Positives = 16/68 (23%), Gaps = 3/68 (4%)
Query: 43 YNTRNNNRIHPMYDNTRNNNRHYTMHNNRNHSMYHAWNDNRNHSMYDNTRNNNRHYTMHN 102
+ P N N R YH + + S++ +N
Sbjct: 334 EVMVFHGMAFPEMAKKLENFGFV---NYRPGGEYHMNSPEMSKSLHKAVAAYKVGGNGNN 390
Query: 103 NRNHSMYN 110
+ Y
Sbjct: 391 GEAYDHYE 398
>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable
domain, VH {Engineered (including hybrid species)}
Length = 125
Score = 24.3 bits (52), Expect = 5.9
Identities = 7/75 (9%), Positives = 17/75 (22%)
Query: 35 YINRNHYMYNTRNNNRIHPMYDNTRNNNRHYTMHNNRNHSMYHAWNDNRNHSMYDNTRNN 94
+ H M R + + + + Y + + + D+ +Y
Sbjct: 27 FRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86
Query: 95 NRHYTMHNNRNHSMY 109
T
Sbjct: 87 RVEDTAIYYCARKGS 101
>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 119
Score = 23.9 bits (51), Expect = 7.2
Identities = 10/78 (12%), Positives = 18/78 (23%)
Query: 35 YINRNHYMYNTRNNNRIHPMYDNTRNNNRHYTMHNNRNHSMYHAWNDNRNHSMYDNTRNN 94
Y + YMY R + + TM+ + D + Y +
Sbjct: 27 YTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSL 86
Query: 95 NRHYTMHNNRNHSMYNTR 112
T +
Sbjct: 87 RSEDTAVYYCAADPWELN 104
>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda
variable domain, VL-lambda {Hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 108
Score = 24.0 bits (51), Expect = 7.3
Identities = 3/71 (4%), Positives = 17/71 (23%)
Query: 6 NHSMYHAWYNNRNHSMYDNTRNNNRHYAMYINRNHYMYNTRNNNRIHPMYDNTRNNNRHY 65
+ W+ ++ + I + + + +Y
Sbjct: 26 LPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85
Query: 66 TMHNNRNHSMY 76
+ + +++
Sbjct: 86 CLSSYGDNNDL 96
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 24.5 bits (52), Expect = 7.9
Identities = 5/94 (5%), Positives = 15/94 (15%)
Query: 31 HYAMYINRNHYMYNTRNNNRIHPMYDNTRNNNRHYTMHNNRNHSMYHAWNDNRNHSMYDN 90
R + ++ + + N + +
Sbjct: 138 CRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 197
Query: 91 TRNNNRHYTMHNNRNHSMYNTRNINRNHSMYKNT 124
N + R + + T
Sbjct: 198 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 231
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 24.3 bits (51), Expect = 8.0
Identities = 7/123 (5%), Positives = 24/123 (19%)
Query: 1 MHNNRNHSMYHAWYNNRNHSMYDNTRNNNRHYAMYINRNHYMYNTRNNNRIHPMYDNTRN 60
+ N H R + D N ++ + N
Sbjct: 66 FQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVN 125
Query: 61 NNRHYTMHNNRNHSMYHAWNDNRNHSMYDNTRNNNRHYTMHNNRNHSMYNTRNINRNHSM 120
H + + ++ + + ++ + +
Sbjct: 126 VEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLEL 185
Query: 121 YKN 123
++
Sbjct: 186 RED 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.129 0.421
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,964
Number of extensions: 27805
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 167
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)