BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy84
(2182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|C Chain C, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 142
Score = 140 bits (352), Expect = 1e-32, Method: Composition-based stats.
Identities = 62/133 (46%), Positives = 99/133 (74%), Gaps = 2/133 (1%)
Query: 1029 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 1086
M+ +YFV+VG DNP+++ F K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62
Query: 1087 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 1146
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 63 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 122
Query: 1147 INNWKPDQVADWL 1159
I + D+ +L
Sbjct: 123 IRSSAFDRKVQFL 135
>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution
Length = 140
Score = 140 bits (352), Expect = 1e-32, Method: Composition-based stats.
Identities = 62/133 (46%), Positives = 99/133 (74%), Gaps = 2/133 (1%)
Query: 1029 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 1086
M+ +YFV+VG DNP+++ F K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 1087 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 1146
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 1147 INNWKPDQVADWL 1159
I + D+ +L
Sbjct: 121 IRSSAFDRKVQFL 133
>pdb|3BS5|B Chain B, Crystal Structure Of Hcnk2-SamDHYP-Sam Complex
Length = 80
Score = 79.3 bits (194), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
P++ W P QV DW KGLD + +Y+++F ++G LL + +LE G+ ++GHQE+I
Sbjct: 3 PVSKWSPSQVVDWXKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELI 62
Query: 1206 LEAVDHLRNFHYELDHEN 1223
LEAVD L +Y L+ EN
Sbjct: 63 LEAVDLLCALNYGLETEN 80
Score = 77.0 bits (188), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 65
V+ W P QV DW KGLD + +Y+++F ++G LL + +LE G+ ++GHQE+IL
Sbjct: 4 VSKWSPSQVVDWXKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELIL 63
Query: 66 EAVDHLRNFHYELDHEN 82
EAVD L +Y L+ EN
Sbjct: 64 EAVDLLCALNYGLETEN 80
>pdb|2EAN|A Chain A, Solution Structure Of The N-Terminal Sam-Domain Of Human
Kiaa0902 Protein (Connector Enhancer Of Kinase
Suppressor Of Ras 2)
Length = 83
Score = 70.5 bits (171), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 9 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAV 68
W P QV DW+KGLD + +Y+++F ++G LL + +LE G+ ++GHQE+ILEAV
Sbjct: 11 WSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAV 70
Query: 69 DHL 71
D L
Sbjct: 71 DLL 73
Score = 70.5 bits (171), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 1150 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAV 1209
W P QV DW+KGLD + +Y+++F ++G LL + +LE G+ ++GHQE+ILEAV
Sbjct: 11 WSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAV 70
Query: 1210 DHL 1212
D L
Sbjct: 71 DLL 73
>pdb|1WWV|A Chain A, Solution Structure Of The Sam Domain Of Human Connector
Enhancer Of Ksr-Like Protein Cnk1
Length = 91
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
P+ W P +VA WL+GLD S+ Y F + + G++LL L P LE + +GHQE+I
Sbjct: 10 PVETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI 67
Query: 1206 LEAVDHLRNFHYELDHEN 1223
L V+ L+ L EN
Sbjct: 68 LGGVEQLQALSSRLQTEN 85
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 65
V W P +VA WL+GLD S+ Y F + + G++LL L P LE + +GHQE+IL
Sbjct: 11 VETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELIL 68
Query: 66 EAVDHLRNFHYELDHEN 82
V+ L+ L EN
Sbjct: 69 GGVEQLQALSSRLQTEN 85
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 714 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--AVEVKS 771
GWL ++D S + W R WF++ G+ + + D + LP + + P +
Sbjct: 15 GWLHKQDS--SGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRG 72
Query: 772 RKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIA 808
R++ H G T+ L+AD+ ++ WL L +A+ A
Sbjct: 73 RRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA 110
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 1860 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--AVEVKS 1917
GWL ++D S + W R WF++ G+ + + D + LP + + P +
Sbjct: 15 GWLHKQDS--SGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRG 72
Query: 1918 RKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIA 1954
R++ H G T+ L+AD+ ++ WL L +A+ A
Sbjct: 73 RRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA 110
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 714 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVA---PAVEVK 770
GWLF++ S V QW + WF++ + + D+ I L F VA P+ +
Sbjct: 26 GWLFKQAS--SGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNI- 82
Query: 771 SRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQAT 806
SRK+ K H G T++ SA+S +E +W+ + +A
Sbjct: 83 SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 1860 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVA---PAVEVK 1916
GWLF++ S V QW + WF++ + + D+ I L F VA P+ +
Sbjct: 26 GWLFKQAS--SGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNI- 82
Query: 1917 SRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQAT 1952
SRK+ K H G T++ SA+S +E +W+ + +A
Sbjct: 83 SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119
>pdb|3BQ7|A Chain A, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|B Chain B, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|C Chain C, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|D Chain D, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|E Chain E, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
pdb|3BQ7|F Chain F, Sam Domain Of Diacylglycerol Kinase Delta1 (E35g)
Length = 81
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
P++ W ++VA WL+ L S+ Y + F + + G LL+L+ DL+ G+ KVGH + I
Sbjct: 6 PVHLWGTEEVAAWLEHL--SLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRI 63
Query: 1206 LEAVDHL 1212
L + L
Sbjct: 64 LCGIKEL 70
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 9 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAV 68
W ++VA WL+ L S+ Y + F + + G LL+L+ DL+ G+ KVGH + IL +
Sbjct: 10 WGTEEVAAWLEHL--SLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGI 67
Query: 69 DHL 71
L
Sbjct: 68 KEL 70
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 714 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVA---PAVEVK 770
GWLF++ S V QW + WF++ + + D+ I L F VA P+ +
Sbjct: 15 GWLFKQAS--SGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNI- 71
Query: 771 SRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQAT 806
SRK+ K H G T++ SA+S +E +W+ + +A
Sbjct: 72 SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 1860 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVA---PAVEVK 1916
GWLF++ S V QW + WF++ + + D+ I L F VA P+ +
Sbjct: 15 GWLFKQAS--SGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNI- 71
Query: 1917 SRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQAT 1952
SRK+ K H G T++ SA+S +E +W+ + +A
Sbjct: 72 SRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 714 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVK--S 771
GWL+++D + + W + WF++ + + D+ I LP F +A +
Sbjct: 25 GWLYKQDS--TGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHIN 82
Query: 772 RKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSP 813
RKYA K H T+Y D+ E W+ + A + P
Sbjct: 83 RKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTSGP 125
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 1860 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVK--S 1917
GWL+++D + + W + WF++ + + D+ I LP F +A +
Sbjct: 25 GWLYKQDS--TGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHIN 82
Query: 1918 RKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSP 1959
RKYA K H T+Y D+ E W+ + A + P
Sbjct: 83 RKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTSGP 125
>pdb|2F3N|A Chain A, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F3N|B Chain B, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F3N|C Chain C, Crystal Structure Of The Native Shank Sam Domain.
pdb|2F44|A Chain A, Crystal Structure Of The Zinc-Bound Shank Sam Domain
pdb|2F44|B Chain B, Crystal Structure Of The Zinc-Bound Shank Sam Domain
pdb|2F44|C Chain C, Crystal Structure Of The Zinc-Bound Shank Sam Domain
Length = 76
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 9 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAV 68
W V DWL+ + + HR + F ++ + G HL L +D G+ +VGH+E I A+
Sbjct: 5 WSKFDVGDWLESIHLGEHR--DRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERAL 62
Query: 69 DHL 71
L
Sbjct: 63 RQL 65
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1150 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAV 1209
W V DWL+ + + HR + F ++ + G HL L +D G+ +VGH+E I A+
Sbjct: 5 WSKFDVGDWLESIHLGEHR--DRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERAL 62
Query: 1210 DHL 1212
L
Sbjct: 63 RQL 65
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 38.1 bits (87), Expect = 0.050, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 714 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE--VKS 771
GWL ++ S V W + +F+++ Y + D++ TK +YLPG T+ ++
Sbjct: 12 GWL---KKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEA 68
Query: 772 RKYALKIYHTG--------TTFYLSADSQDEFSSWLGCLSQ 804
K+ +I ++ L A SQ E W+ L +
Sbjct: 69 GKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRR 109
Score = 38.1 bits (87), Expect = 0.050, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 1860 GWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE--VKS 1917
GWL ++ S V W + +F+++ Y + D++ TK +YLPG T+ ++
Sbjct: 12 GWL---KKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEA 68
Query: 1918 RKYALKIYHTG--------TTFYLSADSQDEFSSWLGCLSQ 1950
K+ +I ++ L A SQ E W+ L +
Sbjct: 69 GKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRR 109
>pdb|2D8C|A Chain A, Solution Structure Of The Sam-Domain Of Mouse
Phosphatidyl Ceramidecholinephosphotransferase 1
Length = 97
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVG--HQEI 63
V W P +VADWL L+ ++ Y E H GQ L+NL +D + + +V + +
Sbjct: 17 VVYWSPKKVADWL--LENAMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSDNGQR 72
Query: 64 ILEAVDHLRNFHYELDHEN 82
+L+ ++ L+ H+ H+N
Sbjct: 73 LLDMIETLKMEHHMEAHKN 91
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 1150 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVG--HQEIILE 1207
W P +VADWL L+ ++ Y E H GQ L+NL +D + + +V + + +L+
Sbjct: 20 WSPKKVADWL--LENAMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSDNGQRLLD 75
Query: 1208 AVDHLRNFHYELDHEN 1223
++ L+ H+ H+N
Sbjct: 76 MIETLKMEHHMEAHKN 91
>pdb|2COF|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of
Hypothetical Protein Kiaa1914 From Human
Length = 107
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 728 QWIRGWFIIKGNHFYGFTDKDSTK-AHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFY 786
QW W ++ NH + + D++ +K A + L G V P Y+ +I H G
Sbjct: 21 QWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS-PDHLYSFRILHKGEELA 79
Query: 787 -LSADSQDEFSSWLGCL 802
L A S +E WLG L
Sbjct: 80 KLEAKSSEEMGHWLGLL 96
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 1874 QWIRGWFIIKGNHFYGFTDKDSTK-AHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFY 1932
QW W ++ NH + + D++ +K A + L G V P Y+ +I H G
Sbjct: 21 QWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS-PDHLYSFRILHKGEELA 79
Query: 1933 -LSADSQDEFSSWLGCL 1948
L A S +E WLG L
Sbjct: 80 KLEAKSSEEMGHWLGLL 96
>pdb|3SEI|A Chain A, Crystal Structure Of Caskin1 Tandem Sams
pdb|3SEI|B Chain B, Crystal Structure Of Caskin1 Tandem Sams
Length = 149
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 4 VNVADW----KPDQVADWLKGLDVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKV 58
+++ DW KP +A WL + + +Y + ++N + N + ++ +DL+ GI K+
Sbjct: 68 LSIPDWLPEHKPANLAVWLSM--IGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKL 125
Query: 59 GHQEIILEAVDHL 71
GHQ+ ++ AV L
Sbjct: 126 GHQKKLMLAVRKL 138
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 1151 KPDQVADWLKGLDVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKVGHQEIILEAV 1209
KP +A WL + + +Y + ++N + N + ++ +DL+ GI K+GHQ+ ++ AV
Sbjct: 78 KPANLAVWLSM--IGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAV 135
Query: 1210 DHL 1212
L
Sbjct: 136 RKL 138
>pdb|1V85|A Chain A, Sterile Alpha Motif (Sam) Domain Of Mouse Bifunctional
Apoptosis Regulator
Length = 91
Score = 35.0 bits (79), Expect = 0.41, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 1143 INTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEH--HGICKVG 1200
++ ++ W ++V WL+ L Y + FL+ VNG+ LL L ++ + I
Sbjct: 13 VHKAVDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSS 72
Query: 1201 HQEIILEAVDHLRN 1214
H+ +IL ++ +R+
Sbjct: 73 HRRVILTELERVRS 86
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEH--HGICKVGHQEI 63
V W ++V WL+ L Y + FL+ VNG+ LL L ++ + I H+ +
Sbjct: 17 VDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRV 76
Query: 64 ILEAVDHLRN 73
IL ++ +R+
Sbjct: 77 ILTELERVRS 86
>pdb|2GLE|A Chain A, Solution Structure Of Neurabin Sam Domain
Length = 74
Score = 35.0 bits (79), Expect = 0.49, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 65
V +W QV+ WL GL S+ +YV F +++G+ LL L + L+ G+ + ++
Sbjct: 4 VHEWSVQQVSHWLVGL--SLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVK 61
Query: 66 EAVDHLR 72
+ + ++
Sbjct: 62 KKLKEMK 68
Score = 34.7 bits (78), Expect = 0.61, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 1147 INNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 1206
++ W QV+ WL GL S+ +YV F +++G+ LL L + L+ G+ + ++
Sbjct: 4 VHEWSVQQVSHWLVGL--SLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVK 61
Query: 1207 EAVDHLR 1213
+ + ++
Sbjct: 62 KKLKEMK 68
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 748
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 213 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 251
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 1894
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 213 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 251
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 207 LKKRPGEHLGFCIIPSFHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L+KR GE LG ++ S G I ++ A +SG + GD + IN ++VG
Sbjct: 15 LEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLP 74
Query: 263 VKQVMALFEESSSDIFLTLKKRPC 286
+ A E+ S +TL C
Sbjct: 75 LAACQAAVRETKSQTSVTLSIVHC 98
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 1348 LKKRPGEHLGFCIIPSFHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L+KR GE LG ++ S G I ++ A +SG + GD + IN ++VG
Sbjct: 15 LEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLP 74
Query: 1404 VKQVMALFEESSSDIFLTLKKRPC 1427
+ A E+ S +TL C
Sbjct: 75 LAACQAAVRETKSQTSVTLSIVHC 98
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 748
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 213 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 251
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 1894
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 213 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 251
>pdb|4BBK|A Chain A, Structural And Functional Characterisation Of The
Kindlin-1 Pleckstrin Homology Domain
Length = 165
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 733 WFIIKGNHFYGFTDKDSTKAHLF--IYLPGFTVAPAVEVKSRKYALK----IYHTGTTFY 786
WF+ K F +K+ + + L G + P V V RK+ +K + Y
Sbjct: 49 WFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVY 108
Query: 787 LSADSQDEFSSWLGCLSQAT 806
L D +D+++ W+ A+
Sbjct: 109 LRCDHEDQYARWMAACILAS 128
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 1879 WFIIKGNHFYGFTDKDSTKAHLF--IYLPGFTVAPAVEVKSRKYALK----IYHTGTTFY 1932
WF+ K F +K+ + + L G + P V V RK+ +K + Y
Sbjct: 49 WFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMNEVY 108
Query: 1933 LSADSQDEFSSWLGCLSQAT 1952
L D +D+++ W+ A+
Sbjct: 109 LRCDHEDQYARWMAACILAS 128
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 768 EVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSP 813
++ R +I T TFY+ ADS +E SW+ +S A +A R P
Sbjct: 72 DIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ-RGP 116
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 1914 EVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSP 1959
++ R +I T TFY+ ADS +E SW+ +S A +A R P
Sbjct: 72 DIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ-RGP 116
>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Mouse Ethanol Decreased 4 Protein
Length = 109
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 729 WIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYL- 787
W WF+IK Y + + A L GFTV + S ++ H G FY+
Sbjct: 24 WKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVF 83
Query: 788 SADSQDEFSSWLGCLSQATIA 808
AD W+ + T++
Sbjct: 84 KADDAHSTQRWIDAFQEGTVS 104
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 1875 WIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYL- 1933
W WF+IK Y + + A L GFTV + S ++ H G FY+
Sbjct: 24 WKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVF 83
Query: 1934 SADSQDEFSSWLGCLSQATIA 1954
AD W+ + T++
Sbjct: 84 KADDAHSTQRWIDAFQEGTVS 104
>pdb|1KW4|A Chain A, Polyhomeotic Sam Domain Structure
Length = 89
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
PI++W D V+++++ L YV+ F+ ++GQ LL L+ L + K+G I
Sbjct: 13 PISSWSVDDVSNFIRELP-GCQDYVDDFIQQEIDGQALLRLKEKHLVNAXGXKLGPALKI 71
Query: 1206 LEAVDHLR 1213
+ V+ ++
Sbjct: 72 VAKVESIK 79
>pdb|1PK1|A Chain A, Hetero Sam Domain Structure Of Ph And Scm.
pdb|1PK1|C Chain C, Hetero Sam Domain Structure Of Ph And Scm
Length = 89
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
PI++W D V+++++ L YV+ F+ ++GQ LL L+ L + K+G I
Sbjct: 13 PISSWSVDDVSNFIRELP-GCQDYVDDFIQQEIDGQALLLLKEKHLVNAXGXKLGPARKI 71
Query: 1206 LEAVDHLR 1213
+ V+ ++
Sbjct: 72 VAKVESIK 79
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 748
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 3 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 41
Score = 33.9 bits (76), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 1894
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 3 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 41
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 297 KPYRLPSKKQVSYRWFLDDKITPPRISHFDIKPLGHALVNSVTSFTKNRKPLSGSFENAK 356
+PY + S Q + F+ D P H + P H + N VT+F NR + EN
Sbjct: 45 EPYCIVSHLQEDKKCFICDSRDP---YHETLNPDSHLIENVVTTFAPNRLKIWWQSENGV 101
Query: 357 EDVSIDIE 364
E+V+I ++
Sbjct: 102 ENVTIQLD 109
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 1438 KPYRLPSKKQVSYRWFLDDKITPPRISHFDIKPLGHALVNSVTSFTKNRKPLSGSFENAK 1497
+PY + S Q + F+ D P H + P H + N VT+F NR + EN
Sbjct: 45 EPYCIVSHLQEDKKCFICDSRDP---YHETLNPDSHLIENVVTTFAPNRLKIWWQSENGV 101
Query: 1498 EDVSIDIE 1505
E+V+I ++
Sbjct: 102 ENVTIQLD 109
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 748
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 3 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 41
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 1894
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 3 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 41
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 232 IKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTL 281
+K A+++G + GD I+++N ++V+G QV+AL + S + + L++
Sbjct: 68 VKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 1373 IKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTL 1422
+K A+++G + GD I+++N ++V+G QV+AL + S + + L++
Sbjct: 68 VKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 748
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 5 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 43
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKD 1894
PD EGWL + ++ T W R WFI+ N Y F TDK+
Sbjct: 5 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKE 43
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 713 EGWLFQRDRKISTVPQ--WIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVK 770
+GWL ST+ + W + WF+++ + F + K + + + ++
Sbjct: 61 QGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVR--SAKEIIDNT 118
Query: 771 SRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDR 811
+++ + I TF+L A+S ++ S W LSQ + D+
Sbjct: 119 NKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQ 159
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 1859 EGWLFQRDRKISTVPQ--WIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVK 1916
+GWL ST+ + W + WF+++ + F + K + + + ++
Sbjct: 61 QGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVR--SAKEIIDNT 118
Query: 1917 SRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDR 1957
+++ + I TF+L A+S ++ S W LSQ + D+
Sbjct: 119 NKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQ 159
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 205 ATLKKRPGEHLGFCIIPSFHGI---------HQIGDIKCNSTAYQSGKIECGDEIVQINY 255
+ ++ E GF II S + H+IG I S A + K++ GD I+ +N
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNG 73
Query: 256 QTVVGWDVKQVMALFEESSSDIFLTL 281
Q+++ ++ L +++ + L +
Sbjct: 74 QSIINMPHADIVKLIKDAGLSVTLRI 99
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 1346 ATLKKRPGEHLGFCIIPSFHGI---------HQIGDIKCNSTAYQSGKIECGDEIVQINY 1396
+ ++ E GF II S + H+IG I S A + K++ GD I+ +N
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNG 73
Query: 1397 QTVVGWDVKQVMALFEESSSDIFLTL 1422
Q+++ ++ L +++ + L +
Sbjct: 74 QSIINMPHADIVKLIKDAGLSVTLRI 99
>pdb|3SEN|A Chain A, Structure Of Caskin1 Tandem Sams
pdb|3SEN|B Chain B, Structure Of Caskin1 Tandem Sams
pdb|3SEN|C Chain C, Structure Of Caskin1 Tandem Sams
pdb|3SEN|D Chain D, Structure Of Caskin1 Tandem Sams
Length = 157
Score = 33.1 bits (74), Expect = 2.0, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 4 VNVADW----KPDQVADWLKGLDVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKV 58
+++ DW KP +A WL + + +Y + ++N + N + ++ +DL+ GI K+
Sbjct: 76 LSIPDWLPEHKPANLAVWLSM--IGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKL 133
Query: 59 GHQEIILEAVDHL 71
GHQ+ ++ AV L
Sbjct: 134 GHQKKLMLAVRKL 146
Score = 30.8 bits (68), Expect = 9.0, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 1151 KPDQVADWLKGLDVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKVGHQEIILEAV 1209
KP +A WL + + +Y + ++N + N + ++ +DL+ GI K+GHQ+ ++ AV
Sbjct: 86 KPANLAVWLSM--IGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAV 143
Query: 1210 DHL 1212
L
Sbjct: 144 RKL 146
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDK-----------------DS 749
PD EGWL + V W R WFI+ N Y F TDK D
Sbjct: 11 PDREGWLLKLGG--GRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDP 68
Query: 750 TKAHLF-IYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIA 808
K + F +Y+P K+ + + +SA +Q+E W+ + QA ++
Sbjct: 69 RKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSI-QAAVS 127
Query: 809 HD 810
D
Sbjct: 128 VD 129
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 24/122 (19%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDK-----------------DS 1895
PD EGWL + V W R WFI+ N Y F TDK D
Sbjct: 11 PDREGWLLKLGG--GRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDP 68
Query: 1896 TKAHLF-IYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIA 1954
K + F +Y+P K+ + + +SA +Q+E W+ + QA ++
Sbjct: 69 RKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSI-QAAVS 127
Query: 1955 HD 1956
D
Sbjct: 128 VD 129
>pdb|2QKQ|A Chain A, Structure Of The Sam Domain Of Human Ephrin Type-b
Receptor 4
pdb|2QKQ|B Chain B, Structure Of The Sam Domain Of Human Ephrin Type-b
Receptor 4
Length = 83
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 14 VADWLKGLDVSIHRYVESFLNNHVNGQHLLN-LQPDDLEHHGICKVGHQEIILEAVDHLR 72
V +WL+ + + RY ESF L++ + +DL G+ GHQ+ IL +V H++
Sbjct: 18 VGEWLRA--IKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMK 75
Query: 73 N 73
+
Sbjct: 76 S 76
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1155 VADWLKGLDVSIHRYVESFLNNHVNGQHLLN-LQPDDLEHHGICKVGHQEIILEAVDHLR 1213
V +WL+ + + RY ESF L++ + +DL G+ GHQ+ IL +V H++
Sbjct: 18 VGEWLRA--IKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMK 75
Query: 1214 N 1214
+
Sbjct: 76 S 76
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 31.6 bits (70), Expect = 4.6, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 774 YALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 805
YALKI + + LSA S E W GCLS+A
Sbjct: 304 YALKIETSESCLXLSASSCAERDEWYGCLSRA 335
Score = 31.6 bits (70), Expect = 4.6, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 1920 YALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 1951
YALKI + + LSA S E W GCLS+A
Sbjct: 304 YALKIETSESCLXLSASSCAERDEWYGCLSRA 335
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 229 IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKR 284
+ I +S G+I+ GD+I+ ++ + G+ +Q + + + + LTL +R
Sbjct: 37 VKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 92
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 1370 IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKR 1425
+ I +S G+I+ GD+I+ ++ + G+ +Q + + + + LTL +R
Sbjct: 37 VKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRR 92
>pdb|1B0X|A Chain A, The Crystal Structure Of An Eph Receptor Sam Domain
Reveals A Mechanism For Modular Dimerization
Length = 94
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 14 VADWLKGLDVSIHRYVESFLN-NHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72
V DWL+ + + RY ++F + + ++++ DDL GI + HQ IL +V +R
Sbjct: 29 VGDWLQA--IKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMR 86
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1155 VADWLKGLDVSIHRYVESFLN-NHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213
V DWL+ + + RY ++F + + ++++ DDL GI + HQ IL +V +R
Sbjct: 29 VGDWLQA--IKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMR 86
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 31.6 bits (70), Expect = 5.7, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 207 LKKRPGEHLGFCIIPSFHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
++K+ GE LG I+ S G I ++ A +SGK+ GD+I+ IN ++VG
Sbjct: 7 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLP 66
Query: 263 VKQVMALFE--ESSSDIFLTLKKRPCHSKIL 291
+ ++ + ++ S + L + + P + +L
Sbjct: 67 LSTCQSIIKGLKNQSRVKLNIVRCPPVTTVL 97
Score = 31.6 bits (70), Expect = 5.7, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 1348 LKKRPGEHLGFCIIPSFHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
++K+ GE LG I+ S G I ++ A +SGK+ GD+I+ IN ++VG
Sbjct: 7 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLP 66
Query: 1404 VKQVMALFE--ESSSDIFLTLKKRPCHSKIL 1432
+ ++ + ++ S + L + + P + +L
Sbjct: 67 LSTCQSIIKGLKNQSRVKLNIVRCPPVTTVL 97
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 207 LKKRPGEHLGFCIIPSFHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
++K+ GE LG I+ S G I ++ A +SGK+ GD+I+ IN ++VG
Sbjct: 7 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 1348 LKKRPGEHLGFCIIPSFHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
++K+ GE LG I+ S G I ++ A +SGK+ GD+I+ IN ++VG
Sbjct: 7 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 64
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 207 LKKRPGEHLGFCIIPSFHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
++K+ GE LG I+ S G I ++ A +SGK+ GD+I+ IN ++VG
Sbjct: 11 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 68
Score = 31.2 bits (69), Expect = 6.0, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 1348 LKKRPGEHLGFCIIPSFHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
++K+ GE LG I+ S G I ++ A +SGK+ GD+I+ IN ++VG
Sbjct: 11 IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 68
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 30.8 bits (68), Expect = 8.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 228 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFE 271
Q+ + + A Q GK+E GD IV IN V+G V+ LF+
Sbjct: 47 QVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ 90
Score = 30.8 bits (68), Expect = 8.4, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 1369 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFE 1412
Q+ + + A Q GK+E GD IV IN V+G V+ LF+
Sbjct: 47 QVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQ 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,308,085
Number of Sequences: 62578
Number of extensions: 2481399
Number of successful extensions: 5840
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5746
Number of HSP's gapped (non-prelim): 98
length of query: 2182
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2068
effective length of database: 7,839,445
effective search space: 16211972260
effective search space used: 16211972260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)