Query psy84
Match_columns 2182
No_of_seqs 1129 out of 3468
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 17:42:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy84.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/84hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1738|consensus 100.0 1.4E-77 3E-82 727.6 15.9 612 1144-1932 1-638 (638)
2 KOG1738|consensus 100.0 1.1E-70 2.3E-75 667.6 17.6 617 3-786 1-638 (638)
3 KOG3487|consensus 99.9 1.4E-26 3.1E-31 235.7 10.2 129 1032-1160 2-133 (139)
4 PF04628 Sedlin_N: Sedlin, N-t 99.9 4.2E-26 9.1E-31 241.5 10.0 121 1037-1157 1-127 (132)
5 COG5603 TRS20 Subunit of TRAPP 99.9 8.8E-24 1.9E-28 212.3 10.8 125 1033-1157 3-129 (136)
6 PF10534 CRIC_ras_sig: Connect 99.8 7.5E-23 1.6E-27 204.2 0.0 86 82-167 1-95 (95)
7 PF10534 CRIC_ras_sig: Connect 99.8 9.7E-23 2.1E-27 203.4 0.0 86 1223-1308 1-95 (95)
8 KOG3444|consensus 99.8 3.8E-21 8.2E-26 191.3 10.9 108 1032-1144 2-120 (121)
9 cd01260 PH_CNK Connector enhan 99.8 1.2E-19 2.7E-24 181.3 12.6 94 1857-1951 1-96 (96)
10 cd01260 PH_CNK Connector enhan 99.8 1.7E-18 3.6E-23 173.2 12.6 94 711-805 1-96 (96)
11 cd01233 Unc104 Unc-104 pleckst 99.7 1.1E-17 2.4E-22 169.5 13.0 94 1856-1952 2-98 (100)
12 cd01251 PH_centaurin_alpha Cen 99.7 8.5E-18 1.8E-22 171.4 12.2 94 1858-1953 1-101 (103)
13 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 2.5E-17 5.4E-22 165.7 11.7 91 1859-1952 2-94 (95)
14 KOG3369|consensus 99.7 2E-17 4.4E-22 177.1 11.3 97 1059-1157 95-192 (199)
15 cd01251 PH_centaurin_alpha Cen 99.7 5.5E-17 1.2E-21 165.5 12.4 95 712-808 1-102 (103)
16 KOG0609|consensus 99.7 4.7E-17 1E-21 198.8 14.0 155 168-323 75-252 (542)
17 cd01252 PH_cytohesin Cytohesin 99.7 9.8E-17 2.1E-21 168.4 13.6 95 1857-1955 1-116 (125)
18 cd01265 PH_PARIS-1 PARIS-1 ple 99.7 8.9E-17 1.9E-21 161.7 11.9 92 712-806 1-94 (95)
19 cd01233 Unc104 Unc-104 pleckst 99.7 1.4E-16 2.9E-21 161.6 13.1 94 710-806 2-98 (100)
20 cd01238 PH_Tec Tec pleckstrin 99.7 1.4E-16 3.1E-21 163.3 11.9 93 1858-1950 2-105 (106)
21 cd01235 PH_SETbf Set binding f 99.7 2E-16 4.4E-21 158.8 12.5 92 1858-1952 1-101 (101)
22 cd01236 PH_outspread Outspread 99.7 1.9E-16 4.1E-21 162.0 11.6 93 1858-1950 1-102 (104)
23 cd01264 PH_melted Melted pleck 99.7 3.4E-16 7.3E-21 159.3 11.6 95 1858-1952 2-101 (101)
24 cd01266 PH_Gab Gab (Grb2-assoc 99.7 4.5E-16 9.8E-21 159.8 11.3 94 1858-1951 1-107 (108)
25 cd01247 PH_GPBP Goodpasture an 99.7 7.4E-16 1.6E-20 154.2 12.3 87 1858-1950 1-90 (91)
26 cd01252 PH_cytohesin Cytohesin 99.6 1.2E-15 2.5E-20 160.4 13.8 94 711-808 1-115 (125)
27 cd01264 PH_melted Melted pleck 99.6 1.1E-15 2.4E-20 155.5 11.7 94 712-805 2-100 (101)
28 cd01236 PH_outspread Outspread 99.6 1.3E-15 2.8E-20 156.0 11.7 93 712-804 1-102 (104)
29 cd01235 PH_SETbf Set binding f 99.6 2.6E-15 5.6E-20 150.8 12.6 92 712-806 1-101 (101)
30 cd01247 PH_GPBP Goodpasture an 99.6 2.7E-15 5.8E-20 150.2 12.6 87 712-804 1-90 (91)
31 cd01238 PH_Tec Tec pleckstrin 99.6 2.2E-15 4.7E-20 154.6 12.1 93 712-804 2-105 (106)
32 PF04099 Sybindin: Sybindin-li 99.6 2.9E-15 6.4E-20 161.2 13.3 125 1032-1156 1-136 (142)
33 cd01250 PH_centaurin Centaurin 99.6 2.5E-15 5.4E-20 147.9 11.7 92 1858-1951 1-94 (94)
34 cd01266 PH_Gab Gab (Grb2-assoc 99.6 2.2E-15 4.7E-20 154.8 11.7 94 712-805 1-107 (108)
35 cd01257 PH_IRS Insulin recepto 99.6 3.4E-15 7.3E-20 152.3 12.1 87 1856-1950 2-100 (101)
36 cd01257 PH_IRS Insulin recepto 99.6 7E-15 1.5E-19 150.0 12.5 87 710-804 2-100 (101)
37 cd01246 PH_oxysterol_bp Oxyste 99.6 8.4E-15 1.8E-19 143.3 12.3 88 1858-1951 1-91 (91)
38 KOG0930|consensus 99.6 3E-15 6.4E-20 169.7 10.2 99 1853-1954 257-377 (395)
39 cd01245 PH_RasGAP_CG5898 RAS G 99.6 3.4E-15 7.4E-20 151.4 9.3 90 1858-1950 1-97 (98)
40 cd01250 PH_centaurin Centaurin 99.6 1.4E-14 3E-19 142.6 12.1 92 712-805 1-94 (94)
41 cd01246 PH_oxysterol_bp Oxyste 99.5 3.6E-14 7.7E-19 138.9 12.5 88 712-805 1-91 (91)
42 COG5122 TRS23 Transport protei 99.5 2.2E-14 4.8E-19 144.6 9.7 123 1031-1156 2-127 (134)
43 cd01245 PH_RasGAP_CG5898 RAS G 99.5 2.1E-14 4.6E-19 145.6 9.6 90 712-804 1-97 (98)
44 KOG0930|consensus 99.5 2E-14 4.3E-19 163.1 10.1 97 709-808 259-377 (395)
45 PF00169 PH: PH domain; Inter 99.5 8.2E-14 1.8E-18 136.5 12.7 93 1857-1952 2-103 (104)
46 cd01244 PH_RasGAP_CG9209 RAS_G 99.5 9.2E-14 2E-18 141.1 11.3 91 1860-1951 5-98 (98)
47 cd01263 PH_anillin Anillin Ple 99.5 6.4E-14 1.4E-18 147.2 10.2 94 1856-1951 1-122 (122)
48 cd01241 PH_Akt Akt pleckstrin 99.5 1.5E-13 3.2E-18 140.3 12.1 91 1857-1952 2-102 (102)
49 PF00169 PH: PH domain; Inter 99.5 2.9E-13 6.3E-18 132.6 13.3 93 711-806 2-103 (104)
50 cd01256 PH_dynamin Dynamin ple 99.5 2.6E-13 5.6E-18 135.2 11.2 99 711-810 2-109 (110)
51 cd01244 PH_RasGAP_CG9209 RAS_G 99.5 4.1E-13 8.8E-18 136.5 12.0 91 714-805 5-98 (98)
52 cd01263 PH_anillin Anillin Ple 99.4 2.9E-13 6.2E-18 142.3 10.7 95 710-805 1-122 (122)
53 cd01241 PH_Akt Akt pleckstrin 99.4 9E-13 2E-17 134.5 12.0 91 711-806 2-102 (102)
54 cd01253 PH_beta_spectrin Beta- 99.4 7.9E-13 1.7E-17 134.4 11.5 94 1858-1951 1-104 (104)
55 KOG3549|consensus 99.4 3.8E-13 8.2E-18 156.1 8.6 127 167-296 22-150 (505)
56 cd01253 PH_beta_spectrin Beta- 99.4 1.4E-12 3.1E-17 132.5 11.7 94 712-805 1-104 (104)
57 cd01237 Unc112 Unc-112 pleckst 99.4 9.5E-13 2.1E-17 134.5 7.9 95 713-807 4-104 (106)
58 cd01254 PH_PLD Phospholipase D 99.3 4.8E-12 1E-16 133.1 11.6 94 1858-1951 1-121 (121)
59 PF00536 SAM_1: SAM domain (St 99.3 1.3E-12 2.8E-17 122.0 6.6 64 7-72 1-64 (64)
60 cd01237 Unc112 Unc-112 pleckst 99.3 3.2E-12 6.9E-17 130.7 8.4 85 1870-1954 15-105 (106)
61 PF00595 PDZ: PDZ domain (Also 99.3 9E-12 1.9E-16 121.0 10.0 78 204-282 1-81 (81)
62 PF15409 PH_8: Pleckstrin homo 99.3 1.4E-11 3.1E-16 122.9 10.7 86 1860-1951 1-88 (89)
63 KOG0609|consensus 99.3 1.3E-11 2.9E-16 152.0 12.6 137 1319-1458 90-246 (542)
64 PF07647 SAM_2: SAM domain (St 99.3 3.1E-12 6.7E-17 120.0 5.5 65 6-72 1-66 (66)
65 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 2.3E-11 4.9E-16 127.5 12.5 99 1858-1956 2-115 (117)
66 smart00233 PH Pleckstrin homol 99.3 6.9E-11 1.5E-15 113.6 13.8 94 1857-1952 2-101 (102)
67 cd01254 PH_PLD Phospholipase D 99.3 3.1E-11 6.7E-16 127.1 12.0 94 712-805 1-121 (121)
68 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 3.4E-11 7.4E-16 126.1 12.0 98 712-809 2-114 (117)
69 PF00595 PDZ: PDZ domain (Also 99.2 2.5E-11 5.5E-16 117.9 9.7 78 1345-1423 1-81 (81)
70 KOG3550|consensus 99.2 2.7E-10 5.8E-15 120.7 17.5 88 199-287 88-177 (207)
71 cd01219 PH_FGD FGD (faciogenit 99.2 6.8E-11 1.5E-15 120.7 12.5 93 1857-1953 3-100 (101)
72 PF15409 PH_8: Pleckstrin homo 99.2 5.3E-11 1.1E-15 118.9 11.2 86 714-805 1-88 (89)
73 KOG3209|consensus 99.2 2E-11 4.3E-16 151.4 9.5 136 1272-1429 702-839 (984)
74 cd01220 PH_CDEP Chondrocyte-de 99.2 9.4E-11 2E-15 119.6 12.5 93 1857-1953 3-98 (99)
75 PF00536 SAM_1: SAM domain (St 99.2 1.2E-11 2.5E-16 115.6 4.9 63 1149-1213 2-64 (64)
76 smart00233 PH Pleckstrin homol 99.2 2.1E-10 4.6E-15 110.2 13.8 94 711-806 2-101 (102)
77 cd01256 PH_dynamin Dynamin ple 99.2 7.2E-11 1.6E-15 118.0 10.1 94 1857-1952 2-105 (110)
78 PF06663 DUF1170: Protein of u 99.2 2.8E-11 6.1E-16 133.0 7.3 135 1536-1773 4-143 (189)
79 cd01219 PH_FGD FGD (faciogenit 99.2 2.5E-10 5.4E-15 116.6 12.7 93 711-807 3-100 (101)
80 cd00821 PH Pleckstrin homology 99.1 1.8E-10 3.9E-15 109.8 10.2 92 1858-1951 1-96 (96)
81 cd01220 PH_CDEP Chondrocyte-de 99.1 3.9E-10 8.4E-15 115.2 12.8 93 711-807 3-98 (99)
82 PF15413 PH_11: Pleckstrin hom 99.1 3.6E-10 7.7E-15 117.6 12.1 92 1858-1951 1-112 (112)
83 KOG3938|consensus 99.1 3.7E-11 7.9E-16 136.6 5.0 82 1343-1425 127-208 (334)
84 PF15410 PH_9: Pleckstrin homo 99.1 4E-10 8.7E-15 118.3 12.4 95 1858-1952 2-118 (119)
85 KOG3209|consensus 99.1 1.4E-10 3.1E-15 144.0 10.2 84 202-287 754-838 (984)
86 smart00454 SAM Sterile alpha m 99.1 9.4E-11 2E-15 108.9 6.4 66 6-73 1-67 (68)
87 cd00166 SAM Sterile alpha moti 99.1 7.2E-11 1.6E-15 108.6 5.3 63 8-72 1-63 (63)
88 PF07647 SAM_2: SAM domain (St 99.1 4.3E-11 9.4E-16 112.3 3.8 65 1147-1213 1-66 (66)
89 cd00821 PH Pleckstrin homology 99.1 4.6E-10 1E-14 107.0 10.5 92 712-805 1-96 (96)
90 PF15413 PH_11: Pleckstrin hom 99.1 8.5E-10 1.9E-14 114.8 12.2 92 712-805 1-112 (112)
91 KOG3549|consensus 99.1 2.8E-10 6.1E-15 132.8 9.0 111 1310-1423 24-137 (505)
92 PF15410 PH_9: Pleckstrin homo 99.1 1.1E-09 2.4E-14 115.0 12.5 95 712-806 2-118 (119)
93 cd00900 PH-like Pleckstrin hom 99.1 1.4E-09 3E-14 104.6 12.1 94 1858-1951 1-99 (99)
94 cd00900 PH-like Pleckstrin hom 99.0 2.6E-09 5.6E-14 102.7 12.3 94 712-805 1-99 (99)
95 KOG4375|consensus 99.0 2.6E-10 5.5E-15 130.2 3.7 70 1-72 202-271 (272)
96 cd00166 SAM Sterile alpha moti 98.9 5.4E-10 1.2E-14 102.8 4.2 63 1149-1213 1-63 (63)
97 smart00454 SAM Sterile alpha m 98.9 8.4E-10 1.8E-14 102.5 5.4 66 1147-1214 1-67 (68)
98 cd01234 PH_CADPS CADPS (Ca2+-d 98.9 7.9E-10 1.7E-14 111.5 5.3 94 712-808 4-112 (117)
99 cd01234 PH_CADPS CADPS (Ca2+-d 98.9 1.4E-09 3.1E-14 109.7 6.1 93 1858-1953 4-111 (117)
100 KOG3550|consensus 98.9 2.6E-09 5.7E-14 113.3 8.0 87 1340-1427 88-176 (207)
101 KOG1170|consensus 98.9 9.2E-10 2E-14 138.4 5.0 73 1-75 990-1062(1099)
102 KOG3938|consensus 98.9 1.9E-09 4E-14 123.1 5.0 83 201-284 126-208 (334)
103 KOG3368|consensus 98.8 3.4E-08 7.3E-13 103.5 12.2 123 1030-1153 1-129 (140)
104 KOG3551|consensus 98.8 1E-08 2.3E-13 121.6 8.8 90 203-292 86-177 (506)
105 KOG1170|consensus 98.7 1.1E-08 2.4E-13 129.0 4.2 71 1144-1216 992-1062(1099)
106 cd00992 PDZ_signaling PDZ doma 98.7 1.1E-07 2.4E-12 91.7 10.2 78 203-281 2-81 (82)
107 KOG4375|consensus 98.6 1.5E-08 3.2E-13 116.2 3.9 71 1138-1212 200-270 (272)
108 cd00992 PDZ_signaling PDZ doma 98.6 1.5E-07 3.2E-12 90.8 10.0 79 1344-1423 2-82 (82)
109 cd01259 PH_Apbb1ip Apbb1ip (Am 98.6 8.3E-08 1.8E-12 99.1 8.2 96 1857-1955 1-111 (114)
110 KOG1090|consensus 98.6 2E-08 4.4E-13 127.9 3.8 92 1858-1952 1636-1731(1732)
111 cd00136 PDZ PDZ domain, also c 98.6 1.3E-07 2.8E-12 89.1 8.2 68 1355-1423 2-70 (70)
112 smart00228 PDZ Domain present 98.6 2.8E-07 6E-12 88.9 10.7 79 203-283 3-83 (85)
113 cd00136 PDZ PDZ domain, also c 98.6 1.4E-07 3E-12 88.8 8.4 67 214-281 2-69 (70)
114 smart00228 PDZ Domain present 98.6 3.7E-07 8E-12 88.1 10.5 78 1345-1424 4-83 (85)
115 KOG3606|consensus 98.5 1.9E-07 4.2E-12 107.2 6.9 84 1340-1423 156-251 (358)
116 KOG3531|consensus 98.5 3.3E-08 7.2E-13 125.7 0.3 132 671-809 889-1022(1036)
117 cd01259 PH_Apbb1ip Apbb1ip (Am 98.5 3.9E-07 8.5E-12 94.2 7.8 94 712-808 2-110 (114)
118 KOG0690|consensus 98.4 2.5E-07 5.5E-12 108.9 6.8 98 1856-1956 15-120 (516)
119 KOG3606|consensus 98.4 3E-07 6.5E-12 105.6 6.6 85 199-283 156-252 (358)
120 cd01218 PH_phafin2 Phafin2 Pl 98.4 2.5E-06 5.4E-11 88.4 11.7 93 1858-1955 6-101 (104)
121 KOG0690|consensus 98.3 6.7E-07 1.5E-11 105.5 7.3 97 710-809 15-119 (516)
122 cd01249 PH_oligophrenin Oligop 98.3 2.1E-06 4.5E-11 88.5 9.6 90 712-803 1-102 (104)
123 KOG3551|consensus 98.3 7.1E-07 1.5E-11 106.6 6.8 85 1344-1428 86-172 (506)
124 cd01242 PH_ROK Rok (Rho- assoc 98.3 5.3E-06 1.2E-10 85.9 12.0 95 1858-1952 2-110 (112)
125 KOG1090|consensus 98.3 2.7E-07 5.9E-12 118.0 2.5 93 711-806 1635-1731(1732)
126 cd01218 PH_phafin2 Phafin2 Pl 98.3 8.3E-06 1.8E-10 84.6 12.0 93 711-808 5-100 (104)
127 cd01243 PH_MRCK MRCK (myotonic 98.2 9.5E-06 2.1E-10 85.2 12.3 94 1857-1951 3-118 (122)
128 cd01242 PH_ROK Rok (Rho- assoc 98.2 1.1E-05 2.4E-10 83.7 12.3 95 712-806 2-110 (112)
129 cd01249 PH_oligophrenin Oligop 98.2 3.6E-06 7.7E-11 86.8 8.6 90 1858-1949 1-102 (104)
130 KOG3640|consensus 98.2 1.9E-06 4.1E-11 111.4 6.7 103 1851-1954 985-1108(1116)
131 cd01243 PH_MRCK MRCK (myotonic 98.2 2.1E-05 4.6E-10 82.7 12.7 93 711-804 3-117 (122)
132 cd01239 PH_PKD Protein kinase 98.1 9E-06 1.9E-10 84.8 9.5 91 1858-1951 2-117 (117)
133 KOG3640|consensus 98.1 2.9E-06 6.4E-11 109.8 6.6 102 705-807 985-1107(1116)
134 KOG1892|consensus 98.1 1.8E-05 3.9E-10 101.8 13.2 209 1198-1428 767-1022(1629)
135 KOG1892|consensus 98.1 1.7E-05 3.6E-10 102.2 12.3 83 202-286 934-1021(1629)
136 cd00988 PDZ_CTP_protease PDZ d 98.1 9.2E-06 2E-10 79.4 7.7 68 1355-1424 3-71 (85)
137 PF14593 PH_3: PH domain; PDB: 98.1 2E-05 4.3E-10 81.7 10.3 87 1857-1955 14-102 (104)
138 KOG3751|consensus 98.1 6.3E-06 1.4E-10 101.9 7.4 100 1854-1956 315-428 (622)
139 cd00988 PDZ_CTP_protease PDZ d 98.0 1.2E-05 2.7E-10 78.5 7.8 68 214-283 3-71 (85)
140 cd01239 PH_PKD Protein kinase 98.0 2.9E-05 6.2E-10 81.1 10.2 91 712-805 2-117 (117)
141 KOG0932|consensus 98.0 2.4E-06 5.2E-11 105.6 2.7 120 1834-1957 488-622 (774)
142 KOG3651|consensus 98.0 1.5E-05 3.2E-10 93.1 8.2 84 1343-1426 5-90 (429)
143 KOG3571|consensus 98.0 1.1E-05 2.4E-10 99.3 7.6 83 199-281 245-336 (626)
144 KOG3531|consensus 97.9 1.9E-06 4E-11 110.3 -0.1 97 1858-1957 926-1024(1036)
145 KOG3651|consensus 97.9 2.4E-05 5.2E-10 91.4 8.5 82 203-284 6-89 (429)
146 KOG2059|consensus 97.9 1.6E-05 3.4E-10 101.3 6.4 98 1858-1956 567-668 (800)
147 KOG3571|consensus 97.9 3.1E-05 6.8E-10 95.5 8.3 88 1336-1423 241-337 (626)
148 KOG0521|consensus 97.8 7.1E-06 1.5E-10 109.1 2.4 98 1856-1955 274-371 (785)
149 KOG0521|consensus 97.8 7.8E-06 1.7E-10 108.7 2.4 97 711-809 275-371 (785)
150 KOG3605|consensus 97.8 7.7E-05 1.7E-09 94.2 10.4 83 199-281 643-731 (829)
151 KOG3580|consensus 97.8 3.3E-05 7.1E-10 95.9 7.0 81 204-287 11-99 (1027)
152 KOG2059|consensus 97.8 3E-05 6.6E-10 98.8 6.8 97 712-809 567-667 (800)
153 cd01261 PH_SOS Son of Sevenles 97.8 0.00017 3.7E-09 75.9 11.1 93 1858-1953 6-110 (112)
154 PF13180 PDZ_2: PDZ domain; PD 97.8 8.8E-05 1.9E-09 72.9 8.5 67 214-283 2-71 (82)
155 PF13180 PDZ_2: PDZ domain; PD 97.8 9.7E-05 2.1E-09 72.6 8.5 67 1355-1424 2-71 (82)
156 KOG3751|consensus 97.7 5.3E-05 1.2E-09 94.0 7.1 97 709-808 316-426 (622)
157 PF14593 PH_3: PH domain; PDB: 97.7 0.00022 4.8E-09 74.1 10.6 87 710-808 13-101 (104)
158 cd01261 PH_SOS Son of Sevenles 97.7 0.00029 6.2E-09 74.2 11.4 93 712-807 6-110 (112)
159 KOG3605|consensus 97.7 5.4E-05 1.2E-09 95.5 7.0 86 1341-1426 644-733 (829)
160 PLN02866 phospholipase D 97.7 0.00023 5E-09 95.6 12.9 82 1873-1954 216-309 (1068)
161 KOG3552|consensus 97.7 6.2E-05 1.3E-09 97.4 7.1 77 1343-1426 56-132 (1298)
162 PLN00188 enhanced disease resi 97.6 0.00018 3.9E-09 93.6 10.5 100 710-809 4-112 (719)
163 KOG3552|consensus 97.6 5.6E-05 1.2E-09 97.8 5.4 75 202-282 56-130 (1298)
164 KOG0932|consensus 97.6 2.9E-05 6.4E-10 96.4 2.7 99 712-810 508-621 (774)
165 PRK11186 carboxy-terminal prot 97.6 0.00011 2.4E-09 96.8 7.4 70 1354-1424 244-319 (667)
166 PLN00188 enhanced disease resi 97.5 0.00034 7.3E-09 91.2 10.8 100 1856-1955 4-112 (719)
167 KOG3580|consensus 97.5 0.00015 3.3E-09 90.2 7.1 80 1345-1427 11-98 (1027)
168 PRK11186 carboxy-terminal prot 97.5 0.00015 3.3E-09 95.5 7.5 71 212-283 243-319 (667)
169 PLN02866 phospholipase D 97.5 0.00062 1.3E-08 91.7 12.9 82 727-808 216-309 (1068)
170 KOG1739|consensus 97.4 0.00015 3.3E-09 89.2 5.0 92 1854-1953 22-117 (611)
171 cd00989 PDZ_metalloprotease PD 97.4 0.00045 9.8E-09 66.6 7.0 65 1356-1424 3-68 (79)
172 cd00989 PDZ_metalloprotease PD 97.4 0.00047 1E-08 66.4 7.1 65 215-283 3-68 (79)
173 COG0793 Prc Periplasmic protea 97.3 0.00054 1.2E-08 86.2 9.0 101 183-284 67-171 (406)
174 cd01258 PH_syntrophin Syntroph 97.3 0.00062 1.3E-08 71.3 7.7 92 1859-1950 2-107 (108)
175 PTZ00267 NIMA-related protein 97.3 0.00048 1E-08 87.9 8.0 92 1855-1952 376-476 (478)
176 COG0793 Prc Periplasmic protea 97.3 0.00053 1.1E-08 86.3 8.1 73 1352-1425 98-171 (406)
177 TIGR00225 prc C-terminal pepti 97.2 0.00049 1.1E-08 84.4 7.4 69 213-283 51-120 (334)
178 PTZ00267 NIMA-related protein 97.2 0.00064 1.4E-08 86.8 7.9 91 710-806 377-476 (478)
179 PLN00049 carboxyl-terminal pro 97.2 0.00076 1.7E-08 84.5 8.4 70 213-283 85-160 (389)
180 PLN00049 carboxyl-terminal pro 97.2 0.00081 1.8E-08 84.3 8.3 70 1354-1424 85-160 (389)
181 cd01258 PH_syntrophin Syntroph 97.2 0.0013 2.7E-08 69.0 8.2 91 714-804 3-107 (108)
182 TIGR00225 prc C-terminal pepti 97.2 0.00064 1.4E-08 83.4 7.2 68 1355-1424 52-120 (334)
183 cd00990 PDZ_glycyl_aminopeptid 97.2 0.00099 2.1E-08 64.6 7.1 64 215-283 3-66 (80)
184 KOG3678|consensus 97.1 0.00048 1E-08 84.6 5.5 84 5-90 461-547 (832)
185 cd00990 PDZ_glycyl_aminopeptid 97.1 0.0011 2.4E-08 64.3 7.0 64 1356-1424 3-66 (80)
186 cd01224 PH_Collybistin Collybi 97.1 0.0056 1.2E-07 64.3 11.7 89 1858-1950 4-105 (109)
187 KOG1739|consensus 97.0 0.00076 1.6E-08 83.4 5.5 94 708-807 22-117 (611)
188 KOG0248|consensus 97.0 0.00038 8.2E-09 88.4 2.6 95 1855-1956 248-345 (936)
189 KOG3553|consensus 96.9 0.00084 1.8E-08 68.4 4.3 59 214-273 36-106 (124)
190 cd01262 PH_PDK1 3-Phosphoinosi 96.9 0.0049 1.1E-07 62.5 9.2 84 1858-1952 3-88 (89)
191 cd00986 PDZ_LON_protease PDZ d 96.9 0.0032 6.8E-08 61.4 7.6 56 222-282 6-63 (79)
192 cd00987 PDZ_serine_protease PD 96.9 0.0022 4.8E-08 63.1 6.7 55 226-283 25-81 (90)
193 cd01224 PH_Collybistin Collybi 96.9 0.012 2.7E-07 61.9 12.3 91 712-805 4-106 (109)
194 KOG3543|consensus 96.9 0.00021 4.5E-09 89.2 -0.7 96 711-809 465-568 (1218)
195 KOG4384|consensus 96.9 0.0011 2.4E-08 80.2 5.2 67 10-78 214-281 (361)
196 KOG3553|consensus 96.8 0.0014 2.9E-08 66.9 4.3 59 1355-1414 36-106 (124)
197 cd00991 PDZ_archaeal_metallopr 96.7 0.0045 9.7E-08 60.8 7.5 54 227-283 12-67 (79)
198 cd00991 PDZ_archaeal_metallopr 96.7 0.0043 9.4E-08 60.9 7.2 54 1368-1424 12-67 (79)
199 cd00987 PDZ_serine_protease PD 96.7 0.0036 7.7E-08 61.6 6.5 55 1367-1424 25-81 (90)
200 cd00986 PDZ_LON_protease PDZ d 96.6 0.0051 1.1E-07 60.0 7.0 58 1362-1424 5-64 (79)
201 KOG4384|consensus 96.6 0.0016 3.4E-08 78.9 4.0 68 1150-1219 213-281 (361)
202 KOG3543|consensus 96.6 0.00042 9.1E-09 86.6 -0.7 93 1858-1953 466-566 (1218)
203 cd01240 PH_beta-ARK Beta adren 96.6 0.0015 3.3E-08 67.8 3.3 97 1856-1955 3-101 (116)
204 KOG1451|consensus 96.4 0.0045 9.8E-08 78.1 6.7 106 1849-1956 258-371 (812)
205 KOG1451|consensus 96.4 0.005 1.1E-07 77.8 7.0 98 704-803 259-364 (812)
206 KOG0196|consensus 96.4 0.0047 1E-07 80.9 6.7 94 1120-1215 876-985 (996)
207 KOG3723|consensus 96.4 0.0013 2.8E-08 82.4 1.4 102 708-809 733-839 (851)
208 cd01225 PH_Cool_Pix Cool (clon 96.3 0.031 6.7E-07 58.9 10.8 99 1851-1952 7-109 (111)
209 KOG1117|consensus 96.3 0.0079 1.7E-07 78.6 7.8 95 1858-1952 494-601 (1186)
210 cd01240 PH_beta-ARK Beta adren 96.3 0.0032 6.9E-08 65.5 3.3 96 710-808 3-100 (116)
211 KOG0606|consensus 96.3 0.0092 2E-07 80.6 8.3 88 1346-1435 630-726 (1205)
212 KOG0248|consensus 96.2 0.0022 4.7E-08 81.9 2.3 94 710-809 249-344 (936)
213 KOG1117|consensus 96.2 0.01 2.2E-07 77.6 8.2 98 710-807 492-602 (1186)
214 KOG3542|consensus 96.2 0.0053 1.1E-07 77.9 5.4 82 1341-1424 534-618 (1283)
215 cd01262 PH_PDK1 3-Phosphoinosi 96.2 0.025 5.3E-07 57.6 9.1 85 712-805 3-87 (89)
216 KOG3678|consensus 96.2 0.0049 1.1E-07 76.1 5.0 87 1141-1229 456-545 (832)
217 cd01225 PH_Cool_Pix Cool (clon 96.2 0.021 4.5E-07 60.1 8.7 78 728-805 27-108 (111)
218 cd01226 PH_exo84 Exocyst compl 96.2 0.032 6.9E-07 58.1 9.9 93 1858-1952 4-98 (100)
219 KOG3542|consensus 96.1 0.0066 1.4E-07 77.1 5.6 81 200-282 534-617 (1283)
220 cd01226 PH_exo84 Exocyst compl 96.1 0.037 8E-07 57.6 9.8 93 712-806 4-98 (100)
221 KOG1899|consensus 96.0 0.006 1.3E-07 77.4 4.8 66 5-72 546-612 (861)
222 PF12814 Mcp5_PH: Meiotic cell 96.0 0.051 1.1E-06 58.3 11.2 93 713-805 12-120 (123)
223 KOG0196|consensus 95.9 0.0063 1.4E-07 79.8 4.3 60 13-74 925-985 (996)
224 PF14685 Tricorn_PDZ: Tricorn 95.9 0.024 5.2E-07 57.7 7.5 70 1355-1427 2-81 (88)
225 PF12814 Mcp5_PH: Meiotic cell 95.8 0.074 1.6E-06 57.1 11.3 94 1859-1952 12-121 (123)
226 KOG3723|consensus 95.8 0.0033 7.2E-08 78.9 1.0 105 1851-1956 730-840 (851)
227 KOG0606|consensus 95.7 0.016 3.4E-07 78.5 6.8 76 205-282 630-714 (1205)
228 PTZ00283 serine/threonine prot 95.6 0.023 4.9E-07 73.5 7.5 93 711-807 374-490 (496)
229 KOG4374|consensus 95.5 0.0059 1.3E-07 70.2 1.6 61 11-73 151-211 (216)
230 PF14685 Tricorn_PDZ: Tricorn 95.4 0.041 9E-07 56.1 7.2 71 214-287 2-82 (88)
231 KOG4424|consensus 95.4 0.013 2.9E-07 74.7 4.3 105 1849-1956 490-599 (623)
232 PTZ00283 serine/threonine prot 95.4 0.029 6.3E-07 72.6 7.4 93 1857-1953 374-490 (496)
233 TIGR02037 degP_htrA_DO peripla 95.2 0.034 7.3E-07 70.8 7.1 55 226-283 258-314 (428)
234 KOG1737|consensus 95.1 0.011 2.3E-07 78.9 2.6 93 1857-1957 78-173 (799)
235 TIGR02037 degP_htrA_DO peripla 94.9 0.045 9.8E-07 69.6 7.1 54 1368-1424 259-314 (428)
236 KOG4374|consensus 94.9 0.011 2.3E-07 68.1 1.3 89 1121-1214 120-211 (216)
237 PF09235 Ste50p-SAM: Ste50p, s 94.8 0.03 6.5E-07 54.7 3.7 50 5-55 2-54 (75)
238 PRK10942 serine endoprotease; 94.6 0.054 1.2E-06 70.0 6.8 55 226-283 409-463 (473)
239 PF15408 PH_7: Pleckstrin homo 94.6 0.013 2.8E-07 58.6 1.0 91 1859-1955 1-100 (104)
240 PF15408 PH_7: Pleckstrin homo 94.6 0.02 4.3E-07 57.3 2.2 89 713-807 1-98 (104)
241 PRK10942 serine endoprotease; 94.6 0.056 1.2E-06 69.9 6.7 55 1367-1424 409-463 (473)
242 KOG1899|consensus 94.5 0.032 7E-07 71.2 4.2 69 6-76 620-688 (861)
243 cd01222 PH_clg Clg (common-sit 94.5 0.42 9.1E-06 49.8 11.5 91 1854-1953 2-96 (97)
244 PF09597 IGR: IGR protein moti 94.5 0.046 9.9E-07 51.6 4.1 54 14-72 1-55 (57)
245 cd01222 PH_clg Clg (common-sit 94.5 0.44 9.6E-06 49.6 11.7 88 711-807 5-96 (97)
246 PRK10139 serine endoprotease; 94.1 0.083 1.8E-06 68.0 6.8 55 226-283 391-445 (455)
247 TIGR02860 spore_IV_B stage IV 93.9 0.11 2.3E-06 65.7 7.2 68 1352-1424 94-169 (402)
248 TIGR00054 RIP metalloprotease 93.8 0.099 2.1E-06 66.7 6.6 54 227-283 205-259 (420)
249 PRK10139 serine endoprotease; 93.8 0.1 2.2E-06 67.3 6.8 55 1367-1424 391-445 (455)
250 cd01221 PH_ephexin Ephexin Ple 93.7 0.64 1.4E-05 50.5 11.5 92 711-802 4-118 (125)
251 PF09597 IGR: IGR protein moti 93.7 0.069 1.5E-06 50.5 3.7 55 1155-1214 1-56 (57)
252 TIGR00054 RIP metalloprotease 93.6 0.11 2.3E-06 66.4 6.6 54 1368-1424 205-259 (420)
253 PRK10779 zinc metallopeptidase 93.6 0.14 3.1E-06 65.8 7.6 66 1355-1424 211-277 (449)
254 cd01231 PH_Lnk LNK-family Plec 93.5 0.23 5E-06 51.7 7.3 78 727-804 19-106 (107)
255 KOG1945|consensus 93.5 0.066 1.4E-06 65.4 4.1 68 4-73 262-329 (377)
256 TIGR02038 protease_degS peripl 93.4 0.2 4.3E-06 62.6 8.2 55 226-283 279-335 (351)
257 PF15406 PH_6: Pleckstrin homo 93.3 0.17 3.7E-06 53.2 6.1 65 735-803 45-110 (112)
258 PF04495 GRASP55_65: GRASP55/6 93.2 0.27 5.9E-06 54.1 7.9 97 1341-1441 9-115 (138)
259 cd01221 PH_ephexin Ephexin Ple 93.2 0.68 1.5E-05 50.3 10.7 93 1857-1949 4-119 (125)
260 cd08541 SAM_PNT-FLI-1 Sterile 93.2 0.11 2.5E-06 53.3 4.6 67 5-75 16-85 (91)
261 KOG1737|consensus 93.2 0.055 1.2E-06 72.5 3.0 94 711-812 78-174 (799)
262 TIGR02038 protease_degS peripl 93.1 0.23 4.9E-06 62.1 8.2 54 1368-1424 280-335 (351)
263 PRK10898 serine endoprotease; 93.1 0.18 3.9E-06 63.0 7.1 55 226-283 280-336 (353)
264 PRK10898 serine endoprotease; 93.0 0.18 4E-06 62.9 7.1 55 1367-1424 280-336 (353)
265 cd01228 PH_BCR-related BCR (br 93.0 0.31 6.7E-06 50.4 7.3 81 1858-1951 5-93 (96)
266 PF02198 SAM_PNT: Sterile alph 93.0 0.06 1.3E-06 54.2 2.3 67 5-73 16-82 (84)
267 cd01223 PH_Vav Vav pleckstrin 92.9 0.54 1.2E-05 50.4 9.3 98 1854-1954 2-113 (116)
268 cd08540 SAM_PNT-ERG Sterile al 92.9 0.13 2.8E-06 51.2 4.4 64 6-73 5-71 (75)
269 KOG4424|consensus 92.9 0.079 1.7E-06 68.0 3.7 98 710-810 497-599 (623)
270 TIGR01713 typeII_sec_gspC gene 92.9 0.32 6.9E-06 58.6 8.6 54 227-283 193-248 (259)
271 KOG4403|consensus 92.9 0.087 1.9E-06 65.2 3.8 59 5-64 131-193 (575)
272 cd01223 PH_Vav Vav pleckstrin 92.9 0.56 1.2E-05 50.3 9.3 95 710-807 4-112 (116)
273 TIGR02860 spore_IV_B stage IV 92.8 0.21 4.5E-06 63.2 7.2 67 212-283 95-169 (402)
274 COG3975 Predicted protease wit 92.8 0.61 1.3E-05 60.1 11.1 84 170-256 401-492 (558)
275 TIGR03279 cyano_FeS_chp putati 92.7 0.14 3.1E-06 65.0 5.6 52 228-284 1-52 (433)
276 cd01231 PH_Lnk LNK-family Plec 92.7 0.34 7.3E-06 50.5 7.1 80 1871-1950 17-106 (107)
277 PF04495 GRASP55_65: GRASP55/6 92.7 0.31 6.7E-06 53.7 7.4 81 199-281 8-98 (138)
278 TIGR01713 typeII_sec_gspC gene 92.6 0.35 7.5E-06 58.3 8.5 54 1368-1424 193-248 (259)
279 PRK10779 zinc metallopeptidase 92.6 0.15 3.2E-06 65.6 5.7 54 1369-1425 129-184 (449)
280 TIGR03279 cyano_FeS_chp putati 92.4 0.16 3.5E-06 64.6 5.5 50 1370-1424 2-51 (433)
281 cd01228 PH_BCR-related BCR (br 92.3 0.43 9.3E-06 49.4 7.2 80 712-804 5-92 (96)
282 PF15406 PH_6: Pleckstrin homo 92.3 0.27 5.9E-06 51.8 5.9 63 1883-1949 47-110 (112)
283 KOG4407|consensus 91.5 0.041 8.9E-07 74.5 -1.1 110 1845-1955 912-1044(1973)
284 KOG4807|consensus 91.4 0.0038 8.1E-08 75.5 -9.7 79 1873-1952 33-114 (593)
285 KOG3727|consensus 91.2 0.032 7E-07 70.8 -2.4 80 727-808 377-460 (664)
286 cd08531 SAM_PNT-ERG_FLI-1 Ster 91.1 0.17 3.8E-06 50.3 3.0 64 6-73 5-71 (75)
287 smart00251 SAM_PNT SAM / Point 90.9 0.19 4E-06 50.8 3.0 62 5-72 16-80 (82)
288 cd08533 SAM_PNT-ETS-1,2 Steril 90.4 0.34 7.4E-06 47.8 4.3 63 6-73 4-69 (71)
289 cd08757 SAM_PNT_ESE Sterile al 90.2 0.17 3.7E-06 49.4 2.0 58 7-71 3-66 (68)
290 PF15404 PH_4: Pleckstrin homo 89.9 1 2.2E-05 52.0 8.1 51 712-765 1-62 (185)
291 cd08532 SAM_PNT-PDEF-like Ster 89.8 0.33 7.1E-06 48.5 3.7 63 5-73 9-73 (76)
292 cd08534 SAM_PNT-GABP-alpha Ste 89.8 0.34 7.4E-06 49.7 3.9 66 5-74 18-85 (89)
293 KOG0705|consensus 89.6 0.16 3.4E-06 65.1 1.6 36 774-809 446-482 (749)
294 COG3975 Predicted protease wit 89.5 0.93 2E-05 58.5 8.2 104 1311-1426 401-513 (558)
295 PF09235 Ste50p-SAM: Ste50p, s 89.2 0.26 5.7E-06 48.4 2.5 49 1147-1196 3-54 (75)
296 cd08535 SAM_PNT-Tel_Yan Steril 89.2 0.4 8.6E-06 47.0 3.6 62 6-73 3-67 (68)
297 cd01232 PH_TRIO Trio pleckstri 88.5 4.6 0.0001 43.4 11.3 96 709-806 4-112 (114)
298 KOG3727|consensus 88.4 0.072 1.6E-06 67.9 -2.4 82 1873-1956 377-462 (664)
299 KOG3532|consensus 88.4 1.1 2.3E-05 58.6 7.6 72 208-282 381-452 (1051)
300 cd08538 SAM_PNT-ESE-2-like Ste 88.1 0.36 7.8E-06 48.5 2.6 63 4-72 5-72 (78)
301 KOG1945|consensus 88.1 0.87 1.9E-05 56.2 6.3 66 1147-1214 264-329 (377)
302 cd08542 SAM_PNT-ETS-1 Sterile 87.8 0.65 1.4E-05 47.7 4.3 64 5-73 18-84 (88)
303 cd08203 SAM_PNT Sterile alpha 87.6 0.27 5.9E-06 47.7 1.4 61 7-72 3-65 (66)
304 cd08541 SAM_PNT-FLI-1 Sterile 87.5 0.57 1.2E-05 48.3 3.7 61 1148-1216 18-85 (91)
305 KOG4407|consensus 87.5 0.041 8.9E-07 74.6 -5.5 106 702-807 915-1042(1973)
306 cd01232 PH_TRIO Trio pleckstri 87.0 7.1 0.00015 42.0 11.6 77 1876-1952 25-112 (114)
307 cd08540 SAM_PNT-ERG Sterile al 87.0 0.6 1.3E-05 46.6 3.4 59 1148-1214 6-71 (75)
308 KOG3532|consensus 87.0 1.3 2.9E-05 57.8 7.2 69 1349-1420 381-449 (1051)
309 KOG4807|consensus 86.7 0.014 2.9E-07 71.0 -9.6 77 727-804 33-112 (593)
310 PF15404 PH_4: Pleckstrin homo 86.5 4.1 8.9E-05 47.1 10.2 49 1858-1909 1-60 (185)
311 KOG4403|consensus 86.3 0.46 1E-05 59.2 2.7 69 1125-1205 120-193 (575)
312 KOG3129|consensus 86.0 7.8 0.00017 45.5 11.9 29 1367-1396 140-168 (231)
313 COG3480 SdrC Predicted secrete 85.8 1.5 3.3E-05 53.7 6.6 62 1359-1425 124-187 (342)
314 PF02198 SAM_PNT: Sterile alph 85.7 0.29 6.3E-06 49.4 0.5 62 1148-1214 18-82 (84)
315 cd08531 SAM_PNT-ERG_FLI-1 Ster 85.6 0.7 1.5E-05 46.1 3.1 63 1148-1214 6-71 (75)
316 cd08536 SAM_PNT-Mae Sterile al 85.2 0.71 1.5E-05 45.0 2.9 41 7-53 3-49 (66)
317 cd08543 SAM_PNT-ETS-2 Sterile 85.1 0.57 1.2E-05 48.1 2.3 64 5-73 18-84 (89)
318 cd01248 PH_PLC Phospholipase C 85.0 4.3 9.3E-05 43.0 8.9 75 728-804 19-114 (115)
319 cd01248 PH_PLC Phospholipase C 83.8 4.5 9.7E-05 42.9 8.4 75 1874-1950 19-114 (115)
320 KOG3129|consensus 83.7 9.5 0.00021 44.8 11.3 56 226-282 140-197 (231)
321 COG3480 SdrC Predicted secrete 83.6 2.2 4.7E-05 52.5 6.6 58 222-284 128-187 (342)
322 cd08539 SAM_PNT-ESE-3-like Ste 83.2 1.6 3.4E-05 43.6 4.3 65 5-72 4-70 (74)
323 KOG0705|consensus 82.7 0.64 1.4E-05 59.9 1.8 36 1920-1955 446-482 (749)
324 cd08532 SAM_PNT-PDEF-like Ster 82.5 1.1 2.5E-05 44.8 3.1 61 1148-1214 11-73 (76)
325 KOG4236|consensus 82.4 1.5 3.2E-05 56.5 4.7 96 1858-1957 415-528 (888)
326 KOG3930|consensus 82.3 0.97 2.1E-05 54.7 2.9 49 1166-1214 18-66 (389)
327 PF06663 DUF1170: Protein of u 81.9 2.8 6.1E-05 48.2 6.2 96 316-450 23-120 (189)
328 KOG4236|consensus 81.3 1.9 4.1E-05 55.6 5.1 93 712-808 415-525 (888)
329 cd08533 SAM_PNT-ETS-1,2 Steril 81.2 1.5 3.3E-05 43.5 3.4 59 1148-1214 5-69 (71)
330 KOG3930|consensus 80.9 1.2 2.6E-05 54.0 3.1 49 25-73 18-66 (389)
331 cd08757 SAM_PNT_ESE Sterile al 80.8 0.69 1.5E-05 45.3 0.9 58 1148-1212 3-66 (68)
332 PF15405 PH_5: Pleckstrin homo 80.2 9 0.00019 42.3 9.3 91 712-805 3-134 (135)
333 KOG4371|consensus 79.6 1.9 4.1E-05 58.9 4.6 83 200-282 1244-1327(1332)
334 cd08537 SAM_PNT-ESE-1-like Ste 79.6 2.3 5.1E-05 42.7 4.1 65 4-72 8-75 (78)
335 KOG2070|consensus 79.3 7.1 0.00015 50.1 9.0 97 1850-1950 304-404 (661)
336 cd08535 SAM_PNT-Tel_Yan Steril 79.0 2 4.3E-05 42.3 3.4 61 1148-1214 4-67 (68)
337 cd08203 SAM_PNT Sterile alpha 78.2 2.1 4.4E-05 41.7 3.2 60 1148-1213 3-65 (66)
338 smart00251 SAM_PNT SAM / Point 77.8 1.2 2.5E-05 45.2 1.5 61 1148-1214 18-81 (82)
339 cd08538 SAM_PNT-ESE-2-like Ste 77.8 1.3 2.8E-05 44.6 1.8 62 1145-1214 5-73 (78)
340 cd08534 SAM_PNT-GABP-alpha Ste 76.4 2.8 6.1E-05 43.3 3.7 61 1148-1216 20-86 (89)
341 KOG0792|consensus 76.1 1.4 3E-05 60.6 1.9 70 205-274 708-798 (1144)
342 KOG4371|consensus 76.0 2.8 6E-05 57.4 4.5 81 1341-1421 1244-1325(1332)
343 cd08542 SAM_PNT-ETS-1 Sterile 75.8 2.7 5.8E-05 43.3 3.4 63 1148-1215 20-85 (88)
344 PF15405 PH_5: Pleckstrin homo 73.8 16 0.00034 40.5 8.9 91 1858-1951 3-134 (135)
345 cd08543 SAM_PNT-ETS-2 Sterile 73.5 3.3 7.2E-05 42.7 3.4 62 1148-1214 20-84 (89)
346 KOG1320|consensus 72.5 7 0.00015 50.9 6.7 57 1367-1426 399-455 (473)
347 KOG2070|consensus 71.8 15 0.00032 47.5 8.9 76 729-804 325-404 (661)
348 COG0265 DegQ Trypsin-like seri 70.8 6.9 0.00015 48.8 6.1 63 215-284 264-328 (347)
349 cd01255 PH_TIAM TIAM Pleckstri 69.6 21 0.00045 39.9 8.4 81 727-808 43-156 (160)
350 cd01227 PH_Dbs Dbs (DBL's big 69.2 51 0.0011 36.7 11.5 78 730-809 30-118 (133)
351 COG0265 DegQ Trypsin-like seri 69.1 10 0.00022 47.3 7.1 63 1356-1425 264-328 (347)
352 KOG0792|consensus 69.0 2.6 5.7E-05 58.0 2.0 74 1341-1414 703-797 (1144)
353 KOG4047|consensus 67.0 3.2 7E-05 53.2 2.1 98 1854-1954 6-119 (429)
354 cd08536 SAM_PNT-Mae Sterile al 66.2 3.5 7.6E-05 40.4 1.7 41 1148-1194 3-49 (66)
355 PRK09681 putative type II secr 63.1 12 0.00026 45.9 5.8 57 1355-1424 206-264 (276)
356 KOG0517|consensus 62.8 0.35 7.6E-06 68.3 -7.7 97 711-807 2300-2410(2473)
357 PF15411 PH_10: Pleckstrin hom 62.5 57 0.0012 35.4 10.1 87 711-802 8-116 (116)
358 PRK09681 putative type II secr 61.3 21 0.00045 43.9 7.3 42 240-283 221-264 (276)
359 KOG1421|consensus 60.9 14 0.00031 49.2 6.1 56 223-282 301-357 (955)
360 KOG1421|consensus 59.7 14 0.00031 49.2 5.9 56 1364-1423 301-357 (955)
361 KOG1320|consensus 58.5 17 0.00036 47.6 6.2 57 226-285 399-455 (473)
362 cd01255 PH_TIAM TIAM Pleckstri 57.3 46 0.00099 37.4 8.2 77 1878-1955 52-157 (160)
363 PF01217 Clat_adaptor_s: Clath 57.0 1.1E+02 0.0025 33.5 11.6 93 1032-1136 2-95 (141)
364 cd01227 PH_Dbs Dbs (DBL's big 54.5 1.3E+02 0.0027 33.7 11.2 79 1876-1956 30-119 (133)
365 KOG1264|consensus 53.0 17 0.00037 49.2 5.0 62 1896-1957 850-915 (1267)
366 PF15411 PH_10: Pleckstrin hom 52.9 1E+02 0.0022 33.6 10.0 85 1857-1948 8-116 (116)
367 cd08539 SAM_PNT-ESE-3-like Ste 51.8 10 0.00022 38.1 2.2 64 1147-1214 5-71 (74)
368 KOG4047|consensus 49.2 10 0.00022 49.0 2.1 97 709-808 7-119 (429)
369 cd08537 SAM_PNT-ESE-1-like Ste 47.6 14 0.00029 37.6 2.3 66 1144-1214 7-76 (78)
370 KOG0517|consensus 43.4 1.2 2.6E-05 63.5 -7.5 97 1858-1954 2301-2411(2473)
371 KOG3523|consensus 42.4 31 0.00067 45.9 4.9 76 1875-1950 499-592 (695)
372 cd05134 RasGAP_RASA3 RASA3 (or 41.5 8.2 0.00018 48.0 -0.3 28 1857-1884 281-310 (310)
373 KOG3523|consensus 40.0 35 0.00076 45.4 4.9 77 727-803 497-591 (695)
374 KOG2996|consensus 38.9 46 0.001 44.0 5.6 100 705-807 401-512 (865)
375 COG3031 PulC Type II secretory 38.7 66 0.0014 38.9 6.4 63 1351-1426 202-266 (275)
376 KOG2996|consensus 38.1 57 0.0012 43.2 6.2 103 1850-1955 400-514 (865)
377 KOG1264|consensus 37.2 39 0.00084 46.1 4.7 57 753-809 853-913 (1267)
378 cd05394 RasGAP_RASA2 RASA2 (or 37.2 8.3 0.00018 48.0 -1.1 28 1857-1884 284-313 (313)
379 cd05128 RasGAP_GAP1_like The G 34.0 12 0.00025 46.8 -0.6 27 1857-1883 287-315 (315)
380 COG3031 PulC Type II secretory 34.0 1.2E+02 0.0025 37.0 7.3 69 202-284 195-265 (275)
381 PF12812 PDZ_1: PDZ-like domai 32.5 71 0.0015 32.4 4.7 45 1369-1416 33-77 (78)
382 cd05134 RasGAP_RASA3 RASA3 (or 27.4 19 0.00042 44.9 -0.2 29 710-738 280-310 (310)
383 PF02828 L27: L27 domain; Int 26.4 88 0.0019 29.5 4.0 44 149-195 5-53 (56)
384 PF12812 PDZ_1: PDZ-like domai 25.8 1.2E+02 0.0026 30.8 5.0 45 228-275 33-77 (78)
385 COG0750 Predicted membrane-ass 24.7 1.2E+02 0.0026 38.2 5.9 53 228-283 132-188 (375)
386 PRK08558 adenine phosphoribosy 24.6 6.9E+02 0.015 30.4 11.9 39 243-281 172-210 (238)
387 KOG0249|consensus 24.4 33 0.00072 46.2 1.1 60 16-77 680-740 (916)
388 cd05394 RasGAP_RASA2 RASA2 (or 24.2 19 0.00042 44.9 -1.0 29 710-738 283-313 (313)
389 KOG0861|consensus 23.8 4E+02 0.0086 31.3 9.0 100 1030-1134 1-103 (198)
390 cd05128 RasGAP_GAP1_like The G 23.6 23 0.0005 44.3 -0.5 28 710-737 286-315 (315)
391 KOG0592|consensus 22.3 2E+02 0.0043 38.7 7.1 83 1858-1951 453-536 (604)
392 KOG2572|consensus 22.3 4.3E+02 0.0092 34.5 9.6 100 14-118 60-165 (498)
393 COG0750 Predicted membrane-ass 22.2 1.4E+02 0.003 37.6 5.8 54 1368-1424 131-188 (375)
394 PF08192 Peptidase_S64: Peptid 21.9 1.2E+03 0.026 32.6 14.0 76 1225-1304 167-249 (695)
395 PF08458 PH_2: Plant pleckstri 21.0 1.6E+02 0.0035 32.0 5.0 36 772-807 69-104 (110)
No 1
>KOG1738|consensus
Probab=100.00 E-value=1.4e-77 Score=727.57 Aligned_cols=612 Identities=26% Similarity=0.346 Sum_probs=463.1
Q ss_pred cCCcCCCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHhhhcccCchh
Q psy84 1144 NTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFHYELDHEN 1223 (2182)
Q Consensus 1144 ~~PI~sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~~~y~l~~EN 1223 (2182)
+.||.+|+++||++|++|||++|++|...|+++.|.|++|+++++++|+.|||.++|||++||+||++|++|+|.+++||
T Consensus 1 ~~~v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~lg~rrig~qeli~~av~~L~~l~~~l~~en 80 (638)
T KOG1738|consen 1 MEPVETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLETLGVRRIGHQELILEAVEQLWALKYKLKTEN 80 (638)
T ss_pred CCcccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHHHhhhhhhhHHHHHHHHHHHHHHHhccccCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCCcchhhHHHHHHHHHHHhhhhhccCCCCCCChhhhHHHHHHHHHHHHHHHhh
Q psy84 1224 LQLLALRVSCLAHSLHRELWNY---SSPVVSTQTLSDVATIIKAVKPLVCWLDRPPFSGQLAFIDKKAELLRLSLEMAFS 1300 (2182)
Q Consensus 1224 Lq~La~~l~~~a~sl~~~i~~~---~~~~~~~~~L~~Vv~li~aaK~Ll~WLdR~pF~~~~df~~~r~~I~~l~~eLa~~ 1300 (2182)
||.|++++..++++++ ...| .++++++.||.+|++|++|||.|++||||+||.++.+|+.+|++|.++|++|+++
T Consensus 81 lq~l~~~~~~~~~~~~--~~~y~~~~s~K~~n~vl~~v~~l~~aak~l~~wldR~pf~~~~df~~~~nnV~el~~eL~~~ 158 (638)
T KOG1738|consen 81 LQNLAKKLWTSLKNLQ--EYAYSNQESEKADNFVLLAVVELIRAAKALLFWLDRTPFPQIKDFSFACNNVQELNLELNTL 158 (638)
T ss_pred HHHHHHHHHHHhcccc--ccccccchhhcCccccchhhhhhhHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 3333 6889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHhHhhccCCCcccCCcccceeeEee-cCCCCCcceEEEecCCcceEEeccCCCChh
Q psy84 1301 GQRGKFADHPIENIRNSAKGLSELADEMIREIHDPLLLQPSSLDLATLK-KRPGEHLGFCIIPSFHGIHQIGDIKCNSTA 1379 (2182)
Q Consensus 1301 vq~D~~a~e~e~~i~~ic~~L~~icD~Il~~spD~l~~q~a~le~V~L~-K~~~e~LG~~I~s~~~G~h~Is~I~~gSPA 1379 (2182)
||+||++++.+..++..|..+.++|+.+|.+|+|||++|.++|+.|+|. .+++++||++|+++++|.|+|+.|.++|||
T Consensus 159 v~~d~~a~e~t~~~~~~~s~~~~~~~~~I~~c~DPl~sQ~a~Le~vqls~~kp~eglg~~I~Ssydg~h~~s~~~e~Spa 238 (638)
T KOG1738|consen 159 VHADIHALETTGDVLCYSESEMEYCLSFIVDCPDPLMSQKASLERVQLSTLSPSEGLGLYIDSSYDGPHVTSKIFEQSPA 238 (638)
T ss_pred HHhhhhhhccCCceeEeehhhhccccceeccCCchHhhhHHHHHHHHhccCCcccCCceEEeeecCCceeccccccCChH
Confidence 9999999999999999999999999999999999999999999999998 557889999999999999999999999999
Q ss_pred hhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEeCCCCCcccccccccCCCCCccccccccccccCCCC
Q psy84 1380 YQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQVSYRWFLDDKIT 1459 (2182)
Q Consensus 1380 d~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKkrP~~~~~~~q~~~kp~r~p~~~~~~~~~r~~~~~~ 1459 (2182)
|+|++|++||||+|||+|+||||++++||+.|++.+.+|.|+|||||.+...+.+. |++.. ++..||.+.++
T Consensus 239 d~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~~~~~~~~~-------~sp~~-~~~~r~~~~~~ 310 (638)
T KOG1738|consen 239 DYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPVTSESGFLN-------PSPDT-SSASRWHDLLL 310 (638)
T ss_pred HHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCCCcCCCCCC-------CCccc-chhccCCcccc
Confidence 99999999999999999999999999999999999999999999999998887765 55554 77777778877
Q ss_pred CCCCCcCCCCccccccccccccccccCCCCCCCccCcccccchhhccccccccCCCCCCCCCCCCCCCCCCCCccccccC
Q psy84 1460 PPRISHFDIKPLGHALVNSVTSFTKNRKPLSGSFENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESI 1539 (2182)
Q Consensus 1460 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1539 (2182)
.|-++ |+|.++ .+.+++++++ ++|+
T Consensus 311 ~P~~P---------------------~s~~~d--------------------------------~~t~~S~~~t--p~k~ 335 (638)
T KOG1738|consen 311 VPLPP---------------------RSPISD--------------------------------VATSVSEIDT--PTKL 335 (638)
T ss_pred CCCCC---------------------CCcccc--------------------------------cccccccCCC--Cccc
Confidence 77321 111110 0111222222 2344
Q ss_pred CCCc-cccccccCCCccccccc----cccCCCCCCCCCCCCCchhHHHHHhhhhhhhhcccccCCCCCchhhhcccCCCC
Q psy84 1540 SSPT-SVRLYHPKPRLPVQRRA----TITGTGASPTSKRAPLNLEQLWHELKLEKEWRLSGKQRKGEKSTSELLLSATSP 1614 (2182)
Q Consensus 1540 ~~~~-~~rly~pkPr~~~qrr~----t~~~~~~~p~~k~~~~~~~~~w~~~k~~~~~~~~~~~~~~~~~~s~l~~~~~~~ 1614 (2182)
...+ .++||+|+|+.|+++|+ ..+|+.--|.-+ .--.++++++||+|+.++|.+
T Consensus 336 ~~sa~~~~l~p~~~a~P~~~r~e~~~~~~~~~~~~~~~---------------------~p~~k~~~s~~s~l~~~~~kr 394 (638)
T KOG1738|consen 336 YKSARQASLSPPPPARPSTPRNEDGVAPVKDLRNPSIG---------------------SPVHKIRTSPNSTLKEEDRKR 394 (638)
T ss_pred hhhHHHhhccCCCCCCCCCCCccccccCCCccCCCCCC---------------------CCccCCCCCchhhhhHHHHHH
Confidence 4555 56677777889999993 222221111111 112378999999999888777
Q ss_pred CcccCCcccccccCCCCCCccccccccchhhhhcCCCCccccccccccccCCCCCCcccccccccccCCCCCcccccccc
Q psy84 1615 SEVGSDENKIHLKSAPKACSADCLKSVQSDFVRRNKPDLNLLDSKFIAENEIPGKSLKETDQESKKVNDPSLTEEESNMF 1694 (2182)
Q Consensus 1615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~~~~ 1694 (2182)
+.++-|...+ ... ...+|+++. + .
T Consensus 395 ~~~~~dd~~l------~~~-------------~~~~~~~~~-------------------~-----~------------- 418 (638)
T KOG1738|consen 395 RNLLRDDPDL------YLR-------------KYRKPKVSN-------------------T-----L------------- 418 (638)
T ss_pred HhhcccCCcc------eee-------------eeecCCccc-------------------c-----c-------------
Confidence 6666544222 111 112222210 0 0
Q ss_pred cchHHHHHHhhccccCCCCcCCCCCCCccccccccccccccCC----------CCCCCCCCC-CCCcCCCCcccCCCCCC
Q psy84 1695 IPLKERIEIFNKKIDDSNSVHSMKPKVPAKRYVQNEGFISLTN----------SPAHRPTEK-KPVARPRGKLDKSNSTP 1763 (2182)
Q Consensus 1695 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~n----------~p~~~~~~~-~~~~~~rg~~dks~s~p 1763 (2182)
.++..+..+...|..+|.+|.|.+-.....+ .+..-++++ .....++++.||+++.+
T Consensus 419 ------------r~~~~~~~~k~~p~~~P~e~~~~g~~d~~e~~~~~~~k~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (638)
T KOG1738|consen 419 ------------RIDDIYDQLKANPDDTPQEFKKEGDSDSVENSIGHDRKGKDLLQLTHDVYKAFIFARDTRTDKSMSVR 486 (638)
T ss_pred ------------eeccchhhhccCcccCCchhhhccCcchhhhhccchhhhhhhhhhhhhhhhhhHHHHhcccccccccc
Confidence 0000111222222333333333321100000 000011111 22346688888898888
Q ss_pred cccCCCCCCChhhHHHHHHhhhcccCCCCCCCCCCCCcccccccccccCC------CCCcCCCCCCCCccCCCCcccccc
Q psy84 1764 VYDFNDRPQGADEIELLLSRELKSRINIPASTRNEKPEAQGQILQTEVDD------KKHSCDSSESPKHKATSPKVFRKK 1837 (2182)
Q Consensus 1764 ~yd~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~KK 1837 (2182)
.|..-+....++ .+...|++++...+.+..+ +++..+..++.++..++. ||
T Consensus 487 ~~~~~~~~s~Sp-------------------~~s~~p~~~~~~~~~~~~~~pv~~~a~~h~~q~s~~q~~~~~~----~~ 543 (638)
T KOG1738|consen 487 HLIPCGEKSSSP-------------------CYSSTPASDPDALRSSSSPSPVPAPAPLHGFQSSALQTESKSK----KK 543 (638)
T ss_pred ccCccccccCCC-------------------CCCCCcccccccccccccCCcCCCCCCCCccccccccCCCCCC----CC
Confidence 777655432222 3344444444433333222 333333444444443221 44
Q ss_pred CcccccccCCCCcccCCCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEecccccC
Q psy84 1838 TNLLRGKRRNISVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKS 1917 (2182)
Q Consensus 1838 k~sl~~sRRnis~~~Lg~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~ks 1917 (2182)
......++|+.+++.++.++++|||++++...-+...|+|.||||.+..||+|.++..+.+.++|.|..|+|+.+.++.+
T Consensus 544 ~~~s~~s~~~~~~~~l~~G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~i~~a~e~~~ 623 (638)
T KOG1738|consen 544 GPGSLKSSREEALELLGRGDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFTISVAEEVLG 623 (638)
T ss_pred CCCccchhhhhHHHHhccchhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhheeeccchhhhhHHHhcc
Confidence 45557899999999999999999999998753356789999999999999999999999999999999999999999996
Q ss_pred cceeEEEEcCCeEEE
Q psy84 1918 RKYALKIYHTGTTFY 1932 (2182)
Q Consensus 1918 Rk~aFkI~~~~rtyy 1932 (2182)
++..|..++..+.||
T Consensus 624 ~~~~~~~~~~~~~f~ 638 (638)
T KOG1738|consen 624 KPELTGEKFRQKSFY 638 (638)
T ss_pred CHhhhccchhhcccC
Confidence 666666666656665
No 2
>KOG1738|consensus
Probab=100.00 E-value=1.1e-70 Score=667.59 Aligned_cols=617 Identities=27% Similarity=0.310 Sum_probs=448.1
Q ss_pred cccCCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHhhhcccCcch
Q psy84 3 YVNVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFHYELDHEN 82 (2182)
Q Consensus 3 ~~~V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~l~y~l~~EN 82 (2182)
+.+|+.||+.||++|++||||+|++|...|+++.|.|++|+++++++|++|||.++|||++|++||++|++|+|.++.||
T Consensus 1 ~~~v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~lg~rrig~qeli~~av~~L~~l~~~l~~en 80 (638)
T KOG1738|consen 1 MEPVETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLETLGVRRIGHQELILEAVEQLWALKYKLKTEN 80 (638)
T ss_pred CCcccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHHHhhhhhhhHHHHHHHHHHHHHHHhccccCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hcCCCCCchhhHHHHHHHHHHHhhhhhccCCCCCCCchhhHHHHHHHHHHHHHHHHhc
Q psy84 83 LQLLALRVSCLAHSLHRELW--NYSSPVVSTQTLSDVATIIKAVKPLVCWLDRPPFSGQLAFIDKKAELLRLSLEMAFSG 160 (2182)
Q Consensus 83 LqsLa~~L~~~~~sL~~~i~--~~~s~~~~~~~L~~Vv~lI~aaK~Ll~WLdR~pF~~~~dys~~r~~I~~L~~EL~~~l 160 (2182)
||.|++++..++++++ ... ++.++++++.||.+|++|++|||.|++||||+||.++++|+..|++|.++|+||++++
T Consensus 81 lq~l~~~~~~~~~~~~-~~~y~~~~s~K~~n~vl~~v~~l~~aak~l~~wldR~pf~~~~df~~~~nnV~el~~eL~~~v 159 (638)
T KOG1738|consen 81 LQNLAKKLWTSLKNLQ-EYAYSNQESEKADNFVLLAVVELIRAAKALLFWLDRTPFPQIKDFSFACNNVQELNLELNTLV 159 (638)
T ss_pred HHHHHHHHHHHhcccc-ccccccchhhcCccccchhhhhhhHHHHHHHHHhhhCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 333 3479999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCccccccceEEEee-eCCCCCcceEEEecCCcceEEeccCCCChhh
Q psy84 161 QRGKFADHPIENIRNSAKGLSELADEMIREIHDPLLLQPSSLDLATLK-KRPGEHLGFCIIPSFHGIHQIGDIKCNSTAY 239 (2182)
Q Consensus 161 q~d~~a~e~e~~il~~~~~L~~i~D~I~~~~~dpll~q~a~l~~V~L~-K~~~e~LG~~I~~~~~g~h~VsrI~~gsPAd 239 (2182)
|+|+++++.+..++..|+.+.++|+.+|++|+||++.|.++|+.|+|. ..++++||++|+++++|.|+|+.|.+++|||
T Consensus 160 ~~d~~a~e~t~~~~~~~s~~~~~~~~~I~~c~DPl~sQ~a~Le~vqls~~kp~eglg~~I~Ssydg~h~~s~~~e~Spad 239 (638)
T KOG1738|consen 160 HADIHALETTGDVLCYSESEMEYCLSFIVDCPDPLMSQKASLERVQLSTLSPSEGLGLYIDSSYDGPHVTSKIFEQSPAD 239 (638)
T ss_pred HhhhhhhccCCceeEeehhhhccccceeccCCchHhhhHHHHHHHHhccCCcccCCceEEeeecCCceeccccccCChHH
Confidence 999999999999999999999999999999999999999999999997 3468899999999999999999999999999
Q ss_pred hcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEEecCCCCccccccccCCCCCCcccccCcccccCCcCCC
Q psy84 240 QSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQVSYRWFLDDKITP 319 (2182)
Q Consensus 240 ~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lkkrP~~t~~~~~~~~~~~~~P~~~~a~~~~~~~d~l~~ 319 (2182)
+|++|+.||||+|||+|+||||+++.||+.|++.+.+|.|+|||||..+..+.+. |... ...+.||-+.++.
T Consensus 240 ~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp~~~~~~~~~-------~sp~-~~~~~r~~~~~~~ 311 (638)
T KOG1738|consen 240 YRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRPVTSESGFLN-------PSPD-TSSASRWHDLLLV 311 (638)
T ss_pred HhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccCCCcCCCCCC-------CCcc-cchhccCCccccC
Confidence 9999999999999999999999999999999999999999999999998766554 4444 6677889888888
Q ss_pred CCCCCCCCccccccccccccccccCCCCCCCcccCCCCCcchhccccccccccCCCCCCCCCCCCCCCCCCchhhhccCC
Q psy84 320 PRISHFDIKPLGHALVNSVTSFTKNRKPLSGSFENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESIS 399 (2182)
Q Consensus 320 Pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~ 399 (2182)
|-++ .+.+. +..+.. ++|+
T Consensus 312 P~~P------------------------~s~~~-----------------------d~~t~~--------------S~~~ 330 (638)
T KOG1738|consen 312 PLPP------------------------RSPIS-----------------------DVATSV--------------SEID 330 (638)
T ss_pred CCCC------------------------CCccc-----------------------cccccc--------------ccCC
Confidence 8433 11210 000000 1122
Q ss_pred CC-------ccccccCCCCCccccccccccCCCCCCCCCCCCCchhhhhHhhhcccccccCCCccccccchhhhhccCCC
Q psy84 400 SP-------TSVRLYHPKPRLPVQRRATITGTGASPTSKRAPLNLEQLWHELKLEKEWRLSGKQRKGEKSTSELLLSATS 472 (2182)
Q Consensus 400 ~p-------~~~rly~~kpr~~~qrr~t~~~~~~~~~~k~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 472 (2182)
+| ..+||+||+||.+.++|+.- |-++. |+..+...+. +.. .+++..+||.-
T Consensus 331 tp~k~~~sa~~~~l~p~~~a~P~~~r~e~---~~~~~-----------~~~~~~~~~~--p~~-k~~~s~~s~l~----- 388 (638)
T KOG1738|consen 331 TPTKLYKSARQASLSPPPPARPSTPRNED---GVAPV-----------KDLRNPSIGS--PVH-KIRTSPNSTLK----- 388 (638)
T ss_pred CCccchhhHHHhhccCCCCCCCCCCCccc---cccCC-----------CccCCCCCCC--Ccc-CCCCCchhhhh-----
Confidence 33 48899999999999999322 21211 3222222111 111 23344445521
Q ss_pred CCcccCccccccc-cCCcccccccccc---CccchhhhccCCCCccCcccccccc--cCCCCCCccchhhhcccCCCCCc
Q psy84 473 PSEVGSDENKIHL-KSAPKACSADCLK---SVQSDFVRRNKPDLNLLDSKFIAEN--EIPGKSLKETDQESKKVNDPSLT 546 (2182)
Q Consensus 473 ~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~k~~~en--~~~~~~~~~~~~~~~~~~~~~~~ 546 (2182)
...++. ..+.+-|...|++ ++++. .++.|.. .-+..-| ..|+++++++|
T Consensus 389 -------~~~~kr~~~~~dd~~l~~~~~~~~~~~~---~~r~~~~---~~~~k~~p~~~P~e~~~~g~------------ 443 (638)
T KOG1738|consen 389 -------EEDRKRRNLLRDDPDLYLRKYRKPKVSN---TLRIDDI---YDQLKANPDDTPQEFKKEGD------------ 443 (638)
T ss_pred -------HHHHHHHhhcccCCcceeeeeecCCccc---cceeccc---hhhhccCcccCCchhhhccC------------
Confidence 111111 1233334333333 32222 1222110 0011122 24677777766
Q ss_pred ccccccccchhHHHHHHHHhhccCCCccccCCCCccccccccccccccCCCCCCCCCC-CCCCcCCCCCCCCCCCCCccC
Q psy84 547 EEESNMFIPLKERIEIFNKKIDDSNSVHSMKPKVPAKRYVQNEGFISLTNSPAHRPTE-KKPVARPRGKLDKSNSTPVYD 625 (2182)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~ldks~st~~~d 625 (2182)
.|..++.+--..+.+++..+ -+++ .....-+++|.||++|++.|+
T Consensus 444 ~d~~e~~~~~~~k~~d~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (638)
T KOG1738|consen 444 SDSVENSIGHDRKGKDLLQL----------------------------------THDVYKAFIFARDTRTDKSMSVRHLI 489 (638)
T ss_pred cchhhhhccchhhhhhhhhh----------------------------------hhhhhhhhHHHHhccccccccccccC
Confidence 33333322111111111111 0000 011123588999999999999
Q ss_pred CCCCCCChhHHHHHH-hHhhc-cc-cccCcccCCC-CCCCCCCcCCCCccccCCCCCCCCCCCCccccccccccccccCC
Q psy84 626 FNDRPQGADEIELLL-SRELK-SR-INIPASTLRS-VLPGPSSIQNSPLRAIIPLKPKHKATSPKVFRKKTNLLRGKRRN 701 (2182)
Q Consensus 626 ~~~~~~~~~~~~~~~-~~e~~-~~-~~~~~~~~~~-~~~~~~sf~~S~~~a~~~~~~~kk~t~~~Sf~KKk~s~~skrRn 701 (2182)
..+++..-+ -| ..|.. .. ....+++.+. ++.....|+.|.+ +..++++ |+.+....++|+
T Consensus 490 ~~~~~s~Sp----~~s~~p~~~~~~~~~~~~~~pv~~~a~~h~~q~s~~-----q~~~~~~-------~~~~~s~~s~~~ 553 (638)
T KOG1738|consen 490 PCGEKSSSP----CYSSTPASDPDALRSSSSPSPVPAPAPLHGFQSSAL-----QTESKSK-------KKGPGSLKSSRE 553 (638)
T ss_pred ccccccCCC----CCCCCcccccccccccccCCcCCCCCCCCccccccc-----cCCCCCC-------CCCCCccchhhh
Confidence 888732110 00 00000 00 0000000000 0001122333222 1222222 334445566788
Q ss_pred CCCcCCCCCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeC
Q psy84 702 ISVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHT 781 (2182)
Q Consensus 702 vsv~~lg~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~ 781 (2182)
.+++.++.++++|||+++.....+...|++.||||.+..||+|.+++...+.++|.|.+++|..+.+..+++..|..++.
T Consensus 554 ~~~~~l~~G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~i~~a~e~~~~~~~~~~~~~ 633 (638)
T KOG1738|consen 554 EALELLGRGDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFTISVAEEVLGKPELTGEKFR 633 (638)
T ss_pred hHHHHhccchhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhheeeccchhhhhHHHhccCHhhhccchh
Confidence 89999999999999999887744558999999999999999999999999999999999999999888866666666655
Q ss_pred CeEEE
Q psy84 782 GTTFY 786 (2182)
Q Consensus 782 ~rtyy 786 (2182)
.+.||
T Consensus 634 ~~~f~ 638 (638)
T KOG1738|consen 634 QKSFY 638 (638)
T ss_pred hcccC
Confidence 55554
No 3
>KOG3487|consensus
Probab=99.93 E-value=1.4e-26 Score=235.65 Aligned_cols=129 Identities=45% Similarity=0.833 Sum_probs=119.7
Q ss_pred eEEEEEEcCCCCceEEeccCCCc---cCCCchhHHHHHHHHHHHHHHHhhhcccCCCCceeecccCCeEEEEEEcCCCcE
Q psy84 1032 RYYFVMVGREDNPLYQRGFSCKE---ANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVK 1108 (2182)
Q Consensus 1032 i~~laIIGk~d~PLY~~~f~s~~---~~~~~~~l~~qfi~HsSLDiIeEk~~~t~~~yLg~Ld~~e~~~VygYvT~TgiK 1108 (2182)
..||+|||+.|+|+|+.+|++.. ...+++.+++|||+|+|||||||.+|.+++||||.||.|+++.|++|+|+++|+
T Consensus 2 ~~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas~i~ 81 (139)
T KOG3487|consen 2 TAYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTASHIR 81 (139)
T ss_pred ceEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccCcEE
Confidence 36999999999999999999542 235667899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHHHHHhhcCCCccccCCcCCCCchhhhhhhc
Q psy84 1109 FLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINNWKPDQVADWLK 1160 (2182)
Q Consensus 1109 FILi~d~~~e~~Ir~fF~~VhelYvd~vmNPFy~~~~PI~sWs~dQVv~WLk 1160 (2182)
|+++|..+.+++|++||++|||+|++.+|||||.++.||++--+|+.+.-+.
T Consensus 82 f~mlh~~~~~~~ik~Ffqev~elyik~lmnpFy~~~dpirs~afd~kv~~~~ 133 (139)
T KOG3487|consen 82 FIMLHINRADDNIKLFFQEVHELYIKTLMNPFYEINDPIRSPAFDHKVRGLA 133 (139)
T ss_pred EEEEeeccccccHHHHHHHHHHHHHHHHhCcccccCCccccHHHHHHHHHHH
Confidence 9999999988999999999999999999999999999999999998876554
No 4
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=99.93 E-value=4.2e-26 Score=241.48 Aligned_cols=121 Identities=43% Similarity=0.816 Sum_probs=101.2
Q ss_pred EEcCCCCceEEeccCCCccCC-CchhHHHHHHHHHHHHHHHhhhcc-cCCCCceeecccCCeEEEEEEcCCCcEEEEEec
Q psy84 1037 MVGREDNPLYQRGFSCKEAND-NENKYYYEFIAHASLDLLDEQVWQ-TDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHD 1114 (2182)
Q Consensus 1037 IIGk~d~PLY~~~f~s~~~~~-~~~~l~~qfi~HsSLDiIeEk~~~-t~~~yLg~Ld~~e~~~VygYvT~TgiKFILi~d 1114 (2182)
|||++|+|||+++|+...... +.+.+++||++|+|||+||+++|. ++++|||.|+++++|.||||+|+||+||||+++
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~ 80 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD 80 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence 899999999999998654221 123566999999999999999999 999999999999999999999999999999999
Q ss_pred ----CCChHHHHHHHHHHHHHHHHhhcCCCccccCCcCCCCchhhhh
Q psy84 1115 ----SKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINNWKPDQVAD 1157 (2182)
Q Consensus 1115 ----~~~e~~Ir~fF~~VhelYvd~vmNPFy~~~~PI~sWs~dQVv~ 1157 (2182)
..++++||+||++||++|++++|||||.+++||.+-.|++-++
T Consensus 81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~~~~I~S~~Fd~~v~ 127 (132)
T PF04628_consen 81 MSDNSIRDEDIKQFFKEVHELYVKALCNPFYQPGTPIKSPKFDSRVR 127 (132)
T ss_dssp GGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGCT-HHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHccCCCCCCCCCcCCHHHHHHHH
Confidence 5578999999999999999999999999999999988877664
No 5
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=99.90 E-value=8.8e-24 Score=212.30 Aligned_cols=125 Identities=30% Similarity=0.653 Sum_probs=114.7
Q ss_pred EEEEEEcCCCCceEEeccCCCccCC--CchhHHHHHHHHHHHHHHHhhhcccCCCCceeecccCCeEEEEEEcCCCcEEE
Q psy84 1033 YYFVMVGREDNPLYQRGFSCKEAND--NENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFL 1110 (2182)
Q Consensus 1033 ~~laIIGk~d~PLY~~~f~s~~~~~--~~~~l~~qfi~HsSLDiIeEk~~~t~~~yLg~Ld~~e~~~VygYvT~TgiKFI 1110 (2182)
.|++|||+.|+|+|+++|+..+... ....+++||++|+|||||+.++|..+.+|++.|+.|.+..|+||++++|+||+
T Consensus 3 ~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pSgmkf~ 82 (136)
T COG5603 3 EYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPSGMKFL 82 (136)
T ss_pred ceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccCCceEE
Confidence 6899999999999999999543322 34568899999999999999999999999999999999999999999999999
Q ss_pred EEecCCChHHHHHHHHHHHHHHHHhhcCCCccccCCcCCCCchhhhh
Q psy84 1111 MVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINNWKPDQVAD 1157 (2182)
Q Consensus 1111 Li~d~~~e~~Ir~fF~~VhelYvd~vmNPFy~~~~PI~sWs~dQVv~ 1157 (2182)
++|+....+++|.||++||++|++.+|||||++++||++..||.-++
T Consensus 83 ~iH~n~s~~N~rsF~qevHely~ktLmspfy~~~~pirsqafd~~Vr 129 (136)
T COG5603 83 FIHQNQSRKNARSFLQEVHELYAKTLMSPFYEPDEPIRSQAFDDGVR 129 (136)
T ss_pred EEeccchhhhHHHHHHHHHHHHHHHhhCcccCCCccccchhhhhhHH
Confidence 99998888889999999999999999999999999999998877554
No 6
>PF10534 CRIC_ras_sig: Connector enhancer of kinase suppressor of ras; InterPro: IPR019555 The multi-domain protein Connector enhancer of kinase suppressor of ras (Connector enhancer of KSR) (CNK) functions as a scaffold in several signal cascades and acts on proliferation, differentiation and apoptosis. CNK connects upstream activators and downstream targets of Ras- and Rho-dependent signalling pathways and may allow cross-talk between these pathways. In invertebrates, CNK is expressed as one isoform, whereas in mammals there exists CNK1, CNK2A, and its splice variant CNK2B. CNK proteins consist of one sterile alpha motif (SAM) domain (see PDOC50105 from PROSITEDOC, IPR001660 from INTERPRO) one conserved region in CNK (CRIC) domain, one PSD-96/Dlg-A/ZO-1 (PDZ) domain (see PDOC50106 from PROSITEDOC, IPR001478 from INTERPRO) and one pleckstrin homology (PH) domain (see PDOC50003 from PROSITEDOC, IPR001849 from INTERPRO. The CRIC domain is enriched in leucine residues and functions as a protein-protein interaction domain [, ].; PDB: 1WWV_A.
Probab=99.85 E-value=7.5e-23 Score=204.16 Aligned_cols=86 Identities=31% Similarity=0.431 Sum_probs=0.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh-c--------CCCCCchhhHHHHHHHHHHHhhhhhccCCCCCCCchhhHHHHHHHHHH
Q psy84 82 NLQLLALRVSCLAHSLHRELWN-Y--------SSPVVSTQTLSDVATIIKAVKPLVCWLDRPPFSGQLAFIDKKAELLRL 152 (2182)
Q Consensus 82 NLqsLa~~L~~~~~sL~~~i~~-~--------~s~~~~~~~L~~Vv~lI~aaK~Ll~WLdR~pF~~~~dys~~r~~I~~L 152 (2182)
|||+||++|++++|+||+.|+. + .++++|+++|++|++||++||+|++|||||||++++||+++|++|++|
T Consensus 1 NLqsLt~~L~~~~~~lq~~i~~r~~~~~~dg~~~~~~p~~vL~aVveLi~aAK~Ll~WLdR~pF~~~~dfs~~kn~I~~l 80 (95)
T PF10534_consen 1 NLQSLTEKLRAATHNLQNFIQGRRRSRSYDGRTSRKPPNDVLTAVVELIGAAKALLSWLDRYPFSGLNDFSACKNKIIQL 80 (95)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcHHHHHHHHHHHHHHHhhcccccCCCCCCchHHHHHHHHHHHH
Confidence 8999999999999999999983 2 356899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCC
Q psy84 153 SLEMAFSGQRGKFAD 167 (2182)
Q Consensus 153 ~~EL~~~lq~d~~a~ 167 (2182)
|+||++++|+||+++
T Consensus 81 c~eL~~~vq~d~~~~ 95 (95)
T PF10534_consen 81 CLELTTIVQKDCTVY 95 (95)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhccCCC
Confidence 999999999999863
No 7
>PF10534 CRIC_ras_sig: Connector enhancer of kinase suppressor of ras; InterPro: IPR019555 The multi-domain protein Connector enhancer of kinase suppressor of ras (Connector enhancer of KSR) (CNK) functions as a scaffold in several signal cascades and acts on proliferation, differentiation and apoptosis. CNK connects upstream activators and downstream targets of Ras- and Rho-dependent signalling pathways and may allow cross-talk between these pathways. In invertebrates, CNK is expressed as one isoform, whereas in mammals there exists CNK1, CNK2A, and its splice variant CNK2B. CNK proteins consist of one sterile alpha motif (SAM) domain (see PDOC50105 from PROSITEDOC, IPR001660 from INTERPRO) one conserved region in CNK (CRIC) domain, one PSD-96/Dlg-A/ZO-1 (PDZ) domain (see PDOC50106 from PROSITEDOC, IPR001478 from INTERPRO) and one pleckstrin homology (PH) domain (see PDOC50003 from PROSITEDOC, IPR001849 from INTERPRO. The CRIC domain is enriched in leucine residues and functions as a protein-protein interaction domain [, ].; PDB: 1WWV_A.
Probab=99.85 E-value=9.7e-23 Score=203.37 Aligned_cols=86 Identities=33% Similarity=0.468 Sum_probs=0.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc------C---CCCCcchhhHHHHHHHHHHHhhhhhccCCCCCCChhhhHHHHHHHHHH
Q psy84 1223 NLQLLALRVSCLAHSLHRELWN------Y---SSPVVSTQTLSDVATIIKAVKPLVCWLDRPPFSGQLAFIDKKAELLRL 1293 (2182)
Q Consensus 1223 NLq~La~~l~~~a~sl~~~i~~------~---~~~~~~~~~L~~Vv~li~aaK~Ll~WLdR~pF~~~~df~~~r~~I~~l 1293 (2182)
|||+||++|++++|+||+.|+. | .++++|+++|++||+||++||+|++||||+||++++||+++|++|++|
T Consensus 1 NLqsLt~~L~~~~~~lq~~i~~r~~~~~~dg~~~~~~p~~vL~aVveLi~aAK~Ll~WLdR~pF~~~~dfs~~kn~I~~l 80 (95)
T PF10534_consen 1 NLQSLTEKLRAATHNLQNFIQGRRRSRSYDGRTSRKPPNDVLTAVVELIGAAKALLSWLDRYPFSGLNDFSACKNKIIQL 80 (95)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCCcHHHHHHHHHHHHHHHhhcccccCCCCCCchHHHHHHHHHHHH
Confidence 8999999999999999999982 2 356899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCC
Q psy84 1294 SLEMAFSGQRGKFAD 1308 (2182)
Q Consensus 1294 ~~eLa~~vq~D~~a~ 1308 (2182)
|+||+++||+||+++
T Consensus 81 c~eL~~~vq~d~~~~ 95 (95)
T PF10534_consen 81 CLELTTIVQKDCTVY 95 (95)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhccCCC
Confidence 999999999999875
No 8
>KOG3444|consensus
Probab=99.85 E-value=3.8e-21 Score=191.33 Aligned_cols=108 Identities=31% Similarity=0.519 Sum_probs=99.6
Q ss_pred eEEEEEEcCCCCceEEeccCCCccCCCchhHHHHHHHHHHHHHHHhhhcc-------cCCCCceeecccCCeEEEEEEcC
Q psy84 1032 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQ-------TDHMYLKTIDKFNDMMVSAFVTP 1104 (2182)
Q Consensus 1032 i~~laIIGk~d~PLY~~~f~s~~~~~~~~~l~~qfi~HsSLDiIeEk~~~-------t~~~yLg~Ld~~e~~~VygYvT~ 1104 (2182)
+.|++|+|+.|+|||++.++.. ++++..|+.+|+|||+|||+.+. .+++|||+|+++++|+||||+||
T Consensus 2 ~v~~av~g~kn~~lyi~s~t~~-----e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtN 76 (121)
T KOG3444|consen 2 LVCLAVAGPKNEPLYIESITPK-----EKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTN 76 (121)
T ss_pred EEEEEEEcCCCCccEEEecCcH-----HHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEec
Confidence 4899999999999999998754 57899999999999999999964 46999999999999999999999
Q ss_pred CCcEEEEEecCC----ChHHHHHHHHHHHHHHHHhhcCCCcccc
Q psy84 1105 TGVKFLMVHDSK----NEEGIKKFFTSVYELFIKYSLNPFYKIN 1144 (2182)
Q Consensus 1105 TgiKFILi~d~~----~e~~Ir~fF~~VhelYvd~vmNPFy~~~ 1144 (2182)
|.+|||++++.. .|.+||++|+.+|-+|+|.+|||||.++
T Consensus 77 TkVKFIlvvdssd~avreteiRsv~r~~h~l~td~~~npfy~pg 120 (121)
T KOG3444|consen 77 TKVKFILVVDSSDYAVRETEIRSVFRILHLLYTDLSCNPFYLPG 120 (121)
T ss_pred cEEEEEEEEcCCcceehhHHHHHHHHHHHHHHHHheecceeccC
Confidence 999999999876 4788999999999999999999999765
No 9
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.81 E-value=1.2e-19 Score=181.32 Aligned_cols=94 Identities=40% Similarity=0.885 Sum_probs=86.4
Q ss_pred ceEEEEEeecCCCC-CCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEecccccCcceeEEEEcCC-eEEEEE
Q psy84 1857 DCEGWLFQRDRKIS-TVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLS 1934 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s-~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~-rtyyFs 1934 (2182)
||+|||+|+++.++ .++.|++|||||+++.|+||+++.+..+.|.|+|.+++|..+.+.. ++|+|+|.+++ ++|||+
T Consensus 1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~-k~~~F~I~~~~~~~~~f~ 79 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEVK-KKYAFKVCHPVYKSFYFA 79 (96)
T ss_pred CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhcC-CceEEEECCCCCcEEEEE
Confidence 68999999986443 5789999999999999999999999999999999999998876665 89999999999 999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy84 1935 ADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1935 AdSeeEm~~WI~AL~~A 1951 (2182)
|+|++++++||.+|+.|
T Consensus 80 a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 80 AETLDDLSQWVNHLITA 96 (96)
T ss_pred eCCHHHHHHHHHHHHhC
Confidence 99999999999999876
No 10
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.77 E-value=1.7e-18 Score=173.23 Aligned_cols=94 Identities=40% Similarity=0.885 Sum_probs=85.9
Q ss_pred CeeEEEEeecCCCC-CCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCC-eEEEEE
Q psy84 711 DCEGWLFQRDRKIS-TVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLS 788 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~-~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-rtyyFa 788 (2182)
|++|||+|++..++ .++.|++|||||+++.|+||+++.+..+.|.|+|.+++|..+.+.. ++|+|.|.+++ ++|||+
T Consensus 1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~-k~~~F~I~~~~~~~~~f~ 79 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEVK-KKYAFKVCHPVYKSFYFA 79 (96)
T ss_pred CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhcC-CceEEEECCCCCcEEEEE
Confidence 58999999986644 4679999999999999999999999999999999999998775555 89999999999 999999
Q ss_pred cCCHHHHHHHHHHHHHh
Q psy84 789 ADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 789 AdSeeEme~WI~AL~~A 805 (2182)
|+|++|+++||.+|++|
T Consensus 80 a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 80 AETLDDLSQWVNHLITA 96 (96)
T ss_pred eCCHHHHHHHHHHHHhC
Confidence 99999999999999886
No 11
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.74 E-value=1.1e-17 Score=169.46 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=83.8
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEecccc---cCcceeEEEEcCCeEEE
Q psy84 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV---KSRKYALKIYHTGTTFY 1932 (2182)
Q Consensus 1856 ~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~---ksRk~aFkI~~~~rtyy 1932 (2182)
+.++|||.|+++ ..+.|+||||||++++|+||+++.+..+.|.|+|.++.|...++. ..++++|.|.+++++||
T Consensus 2 v~k~G~L~Kkg~---~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~ 78 (100)
T cd01233 2 VSKKGYLNFPEE---TNSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYL 78 (100)
T ss_pred cceeEEEEeeCC---CCCCcEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEE
Confidence 358999999987 348999999999999999999999999999999999888876443 23689999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHHh
Q psy84 1933 LSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1933 FsAdSeeEm~~WI~AL~~As 1952 (2182)
|+|+|++|+++||++|+...
T Consensus 79 ~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 79 FQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EEcCCHHHHHHHHHHhhhhh
Confidence 99999999999999998754
No 12
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.74 E-value=8.5e-18 Score=171.44 Aligned_cols=94 Identities=14% Similarity=0.337 Sum_probs=79.7
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCC----cEEEec--cc-ccCcceeEEEEcCCeE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG----FTVAPA--VE-VKSRKYALKIYHTGTT 1930 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g----~tVs~a--~e-~ksRk~aFkI~~~~rt 1930 (2182)
++|||.|+|+. ..+.||||||||+++.|+||+++.+..+.|.|+|.. +.|... ++ .....++|.|.+++|+
T Consensus 1 KeG~L~K~g~~--~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rt 78 (103)
T cd01251 1 KEGFMEKTGPK--HTEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERK 78 (103)
T ss_pred CceeEEecCCC--CCCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCCeE
Confidence 58999999973 358999999999999999999999999999999975 445432 11 2223469999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHHhh
Q psy84 1931 FYLSADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1931 yyFsAdSeeEm~~WI~AL~~As~ 1953 (2182)
|||+|+|++||++||+||+.|..
T Consensus 79 y~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 79 FLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEECCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999874
No 13
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.72 E-value=2.5e-17 Score=165.67 Aligned_cols=91 Identities=20% Similarity=0.308 Sum_probs=79.5
Q ss_pred EEEEEeecCCCCCCCCceEEEEEEeC--CeEEEEecCCCCccceeEecCCcEEEecccccCcceeEEEEcCCeEEEEEcC
Q psy84 1859 EGWLFQRDRKISTVPQWIRGWFIIKG--NHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSAD 1936 (2182)
Q Consensus 1859 eGWL~KKg~k~s~~K~WKKRWFVLkd--~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyFsAd 1936 (2182)
+|||+|++++ +..|.|+||||||++ +.||||+++.+..|.|.|+|.++.+....+. ++++|.|.+++++|+|+|+
T Consensus 2 ~GyL~K~g~~-~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~--~~~~F~i~t~~r~y~l~A~ 78 (95)
T cd01265 2 CGYLHKIEGK-GPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPRE--EKGRFEIHSNNEVIALKAS 78 (95)
T ss_pred cccEEEecCC-CCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCC--CCCEEEEEcCCcEEEEECC
Confidence 6999999874 247999999999984 4799999999999999999999776654332 4789999999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy84 1937 SQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1937 SeeEm~~WI~AL~~As 1952 (2182)
|++||++||++|+.+.
T Consensus 79 s~~e~~~Wi~al~~~~ 94 (95)
T cd01265 79 SDKQMNYWLQALQSKR 94 (95)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999999863
No 14
>KOG3369|consensus
Probab=99.72 E-value=2e-17 Score=177.05 Aligned_cols=97 Identities=25% Similarity=0.385 Sum_probs=82.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhcccCCCCceeecccCCeEEEEEEcCCCcEEEEEecCCChHHHHHHHHHHHHHHHHhhc-
Q psy84 1059 ENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL- 1137 (2182)
Q Consensus 1059 ~~~l~~qfi~HsSLDiIeEk~~~t~~~yLg~Ld~~e~~~VygYvT~TgiKFILi~d~~~e~~Ir~fF~~VhelYvd~vm- 1137 (2182)
++.+.+...+| +|++|.+++++-+.+....+..+++|.++||+|.||+|||+|.+... ..+.++|++||++|.||++
T Consensus 95 NEkL~las~fh-sl~aI~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~-~~aD~lLrKiYelYsDyvlK 172 (199)
T KOG3369|consen 95 NEKLILASSFH-SLFAISTQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGT-QGADSLLRKIYELYSDYVLK 172 (199)
T ss_pred cchhhhhhhhc-chhheeeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCc-hhHHHHHHHHHHHHHHHhhc
Confidence 33445555555 99999999988766555566669999999999999999999999865 4589999999999999999
Q ss_pred CCCccccCCcCCCCchhhhh
Q psy84 1138 NPFYKINTPINNWKPDQVAD 1157 (2182)
Q Consensus 1138 NPFy~~~~PI~sWs~dQVv~ 1157 (2182)
||||.++|||++-.||+...
T Consensus 173 NPfYSlEMPIRc~lFDe~lk 192 (199)
T KOG3369|consen 173 NPFYSLEMPIRCELFDEKLK 192 (199)
T ss_pred CCccCcccceeHHHhhHHHH
Confidence 99999999999999988654
No 15
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.71 E-value=5.5e-17 Score=165.52 Aligned_cols=95 Identities=14% Similarity=0.325 Sum_probs=80.0
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCC----cEEEec--cc-cCCCcceEEEEeCCeE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG----FTVAPA--VE-VKSRKYALKIYHTGTT 784 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g----~tV~~~--~d-~ksRk~aFkL~~~~rt 784 (2182)
++|||.|+|+.. .+.||||||||+++.|+||+++.+..+.|.|+|.. +.|... ++ ...+.++|.|.+++|+
T Consensus 1 KeG~L~K~g~~~--~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rt 78 (103)
T cd01251 1 KEGFMEKTGPKH--TEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERK 78 (103)
T ss_pred CceeEEecCCCC--CCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCCeE
Confidence 589999999763 36899999999999999999999999999999975 445432 12 2223469999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhhh
Q psy84 785 FYLSADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 785 yyFaAdSeeEme~WI~AL~~As~~ 808 (2182)
|+|+|+|++||++||+||+.|...
T Consensus 79 y~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 79 FLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred EEEECCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998753
No 16
>KOG0609|consensus
Probab=99.71 E-value=4.7e-17 Score=198.83 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=129.5
Q ss_pred chHHHHHHHHH-----HHHHHHHHHH----hccCCCCcc-----ccccceEEEeeeCCCCCcceEEEecCCcceEEeccC
Q psy84 168 HPIENIRNSAK-----GLSELADEMI----REIHDPLLL-----QPSSLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIK 233 (2182)
Q Consensus 168 e~e~~il~~~~-----~L~~i~D~I~----~~~~dpll~-----q~a~l~~V~L~K~~~e~LG~~I~~~~~g~h~VsrI~ 233 (2182)
..+.++..+++ .++..||.|+ +...+|.+. +...+++|+++|..+++||++|+...++..||+||.
T Consensus 75 ~~~~eL~~iL~~ph~~~~l~ahd~vas~~~~~~~~p~l~~~~~e~~~~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~ 154 (542)
T KOG0609|consen 75 SEVQELRQLLNTPHLQALLQAHDTVASKYDQPPFSPYLNPESPEPVEAVRIVRIVKNTGEPLGATIRVEEDTKVVVARIM 154 (542)
T ss_pred hhHHHHHHHhcchhHhHHHHHhHHHhhccCCCCCccccCCCcccccceeEEEEEeecCCCccceEEEeccCCccEEeeec
Confidence 33455555554 6777889999 455556553 344589999999889999999998766678999999
Q ss_pred CCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEEec----CCCCcccccccc-----CCCCCCcc
Q psy84 234 CNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKR----PCHSKILGQIYM-----KPYRLPSK 304 (2182)
Q Consensus 234 ~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lkkr----P~~t~~~~~~~~-----~~~~~P~~ 304 (2182)
+|+.|+++|.||+||+|++|||+.|.|..+.++.++|+.+.+.|||+|-.. |....+|.++.| +|..|||+
T Consensus 155 ~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~~~~~~~~~~vra~FdYdP~~D~~IPCk 234 (542)
T KOG0609|consen 155 HGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYRPPPQQQVVFVRALFDYDPKEDDLIPCK 234 (542)
T ss_pred cCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEcccccCCCceeeeeehhhcCcCcccCCcccch
Confidence 999999999999999999999999999999999999999999999999332 334457888888 79999999
Q ss_pred cccCcccccCCcCCCCCCC
Q psy84 305 KQVSYRWFLDDKITPPRIS 323 (2182)
Q Consensus 305 ~~a~~~~~~~d~l~~Pr~~ 323 (2182)
+ ||+.|++||||.+=--.
T Consensus 235 E-agl~F~~GDILqIv~qd 252 (542)
T KOG0609|consen 235 E-AGLPFQRGDILQIVSQD 252 (542)
T ss_pred h-cCCcccccceeeeccCC
Confidence 9 99999999999876443
No 17
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.70 E-value=9.8e-17 Score=168.42 Aligned_cols=95 Identities=22% Similarity=0.574 Sum_probs=84.4
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEecccccCcceeEEEEcCC--------
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-------- 1928 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~-------- 1928 (2182)
+++|||+|+++ ..+.|++|||||.+++|+||+++.+..+.|.|+|.++.|..+++. .++++|.|.+++
T Consensus 1 ~k~G~L~K~~~---~~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~~-~~~~~F~i~~~~~~~~i~~~ 76 (125)
T cd01252 1 DREGWLLKQGG---RVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVEDP-SKPFCFELFSPSDKQQIKAC 76 (125)
T ss_pred CcEEEEEEeCC---CCCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEcccC-CCCeeEEEECCccccccccc
Confidence 58999999886 468999999999999999999999999999999999988887554 388999987754
Q ss_pred -------------eEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy84 1929 -------------TTFYLSADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1929 -------------rtyyFsAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
++|||+|+|++|+++||++|+.++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 77 KTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred cccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999988643
No 18
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.70 E-value=8.9e-17 Score=161.73 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=79.9
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeC--CeEEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEEEc
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKG--NHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSA 789 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd--~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyFaA 789 (2182)
++|||+|+++.+. +++|++|||||++ +.|+||+++.+..|.|.|+|.++.+....+. ++++|.|.+++++|+|+|
T Consensus 1 l~GyL~K~g~~~~-~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~--~~~~F~i~t~~r~y~l~A 77 (95)
T cd01265 1 LCGYLHKIEGKGP-LRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPRE--EKGRFEIHSNNEVIALKA 77 (95)
T ss_pred CcccEEEecCCCC-CcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCC--CCCEEEEEcCCcEEEEEC
Confidence 3799999997643 6899999999984 5899999999999999999999876654332 478999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy84 790 DSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 790 dSeeEme~WI~AL~~As 806 (2182)
+|++||++||++|+.+.
T Consensus 78 ~s~~e~~~Wi~al~~~~ 94 (95)
T cd01265 78 SSDKQMNYWLQALQSKR 94 (95)
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999999998763
No 19
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.69 E-value=1.4e-16 Score=161.64 Aligned_cols=94 Identities=14% Similarity=0.217 Sum_probs=83.5
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEecccc---CCCcceEEEEeCCeEEE
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV---KSRKYALKIYHTGTTFY 786 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~---ksRk~aFkL~~~~rtyy 786 (2182)
+.++|||.|+++.. +.|+||||||++++|+||+++.+..+.+.|+|.++.|...++. ..++++|.|.+++++|+
T Consensus 2 v~k~G~L~Kkg~~~---k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~ 78 (100)
T cd01233 2 VSKKGYLNFPEETN---SGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYL 78 (100)
T ss_pred cceeEEEEeeCCCC---CCcEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEE
Confidence 35899999998763 6999999999999999999999999999999999988776443 23689999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHhh
Q psy84 787 LSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 787 FaAdSeeEme~WI~AL~~As 806 (2182)
|+|+|++|+++||.+|+.+.
T Consensus 79 ~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 79 FQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EEcCCHHHHHHHHHHhhhhh
Confidence 99999999999999997654
No 20
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.68 E-value=1.4e-16 Score=163.31 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=77.9
Q ss_pred eEEEEEeecCCC--CCCCCceEEEEEEeCCeEEEEecCCC--CccceeEecCCcE-EEeccccc------CcceeEEEEc
Q psy84 1858 CEGWLFQRDRKI--STVPQWIRGWFIIKGNHFYGFTDKDS--TKAHLFIYLPGFT-VAPAVEVK------SRKYALKIYH 1926 (2182)
Q Consensus 1858 keGWL~KKg~k~--s~~K~WKKRWFVLkd~~LyYYKde~d--~kp~GsI~L~g~t-Vs~a~e~k------sRk~aFkI~~ 1926 (2182)
++|||+|++.+. .+.++||+|||||++++|+||+++.+ ..++|.|+|.++. |+.+.+.. .++++|+|.+
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t 81 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVH 81 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEe
Confidence 699999997532 24569999999999999999999876 4899999999953 44442222 3589999999
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHH
Q psy84 1927 TGTTFYLSADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1927 ~~rtyyFsAdSeeEm~~WI~AL~~ 1950 (2182)
++++|||.|+|++|+++||++|++
T Consensus 82 ~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 82 DEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHh
Confidence 999999999999999999999986
No 21
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.68 E-value=2e-16 Score=158.81 Aligned_cols=92 Identities=24% Similarity=0.442 Sum_probs=77.8
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeC--CeEEEEecCCCCccceeEecCCc-EEEeccc------ccCcceeEEEEcCC
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKG--NHFYGFTDKDSTKAHLFIYLPGF-TVAPAVE------VKSRKYALKIYHTG 1928 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd--~~LyYYKde~d~kp~GsI~L~g~-tVs~a~e------~ksRk~aFkI~~~~ 1928 (2182)
|+|||.|+|+ ..+.|++|||||.+ +.|+||+++.+..+.|.|+|..+ .|..+.. ...+.+.|.|.+++
T Consensus 1 ~~G~L~K~g~---~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~ 77 (101)
T cd01235 1 CEGYLYKRGA---LLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSK 77 (101)
T ss_pred CeEEEEEcCC---CCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCC
Confidence 6899999986 56899999999994 48999999999999999999994 3443211 12356789999989
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1929 TTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1929 rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
++|||+|++++|+++||.+|+.++
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHHhhC
Confidence 999999999999999999998864
No 22
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.68 E-value=1.9e-16 Score=162.01 Aligned_cols=93 Identities=23% Similarity=0.399 Sum_probs=78.3
Q ss_pred eEEEEEeecCCCC------CCCCceEEEEEEe-CCeEEEEecC-CCCccceeEecCCc-EEEecccccCcceeEEEEcCC
Q psy84 1858 CEGWLFQRDRKIS------TVPQWIRGWFIIK-GNHFYGFTDK-DSTKAHLFIYLPGF-TVAPAVEVKSRKYALKIYHTG 1928 (2182)
Q Consensus 1858 keGWL~KKg~k~s------~~K~WKKRWFVLk-d~~LyYYKde-~d~kp~GsI~L~g~-tVs~a~e~ksRk~aFkI~~~~ 1928 (2182)
++|||+|.+.+.. ..|.||||||||+ ++.||||+++ .+..++|.|+|..| .|..+.+..+++++|.|.+++
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~ 80 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPD 80 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECCC
Confidence 4799999998543 4789999999998 5678888877 47899999999884 444455555568999999999
Q ss_pred eEEEEEcCCHHHHHHHHHHHHH
Q psy84 1929 TTFYLSADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1929 rtyyFsAdSeeEm~~WI~AL~~ 1950 (2182)
|+|||.|+|++|+++||.+|..
T Consensus 81 R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 81 KEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred ceEEEEeCCHHHHHHHHHHHHh
Confidence 9999999999999999999974
No 23
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.66 E-value=3.4e-16 Score=159.25 Aligned_cols=95 Identities=22% Similarity=0.400 Sum_probs=78.8
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccc-eeEecCCcE-EEeccccc---CcceeEEEEcCCeEEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH-LFIYLPGFT-VAPAVEVK---SRKYALKIYHTGTTFY 1932 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~-GsI~L~g~t-Vs~a~e~k---sRk~aFkI~~~~rtyy 1932 (2182)
.+|||.|+++.=-..|.|+||||||+++.|+||++.....+. |+|+|..|. |..+.+.. +++++|.|.++.++||
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~ 81 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYI 81 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCceEE
Confidence 589999988620167999999999999999999998665555 999999954 44443322 3479999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHHh
Q psy84 1933 LSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1933 FsAdSeeEm~~WI~AL~~As 1952 (2182)
|+|+|++++++||++|+.|.
T Consensus 82 l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 82 LKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEeCCHHHHHHHHHHHHhhC
Confidence 99999999999999999873
No 24
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.65 E-value=4.5e-16 Score=159.80 Aligned_cols=94 Identities=19% Similarity=0.395 Sum_probs=77.4
Q ss_pred eEEEEEeecCCCC-CCCCceEEEEEEeCCe-------EEEEecCCCCccceeEecCCcEEEec-----ccccCcceeEEE
Q psy84 1858 CEGWLFQRDRKIS-TVPQWIRGWFIIKGNH-------FYGFTDKDSTKAHLFIYLPGFTVAPA-----VEVKSRKYALKI 1924 (2182)
Q Consensus 1858 keGWL~KKg~k~s-~~K~WKKRWFVLkd~~-------LyYYKde~d~kp~GsI~L~g~tVs~a-----~e~ksRk~aFkI 1924 (2182)
|+|||.|+++... ..+.|+||||||++.. |+||+++.+.++.|.|+|..+.+..+ .......|.|.|
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i 80 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDI 80 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEE
Confidence 5899999987322 3469999999999865 69999999999999999999655432 111124678999
Q ss_pred EcCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy84 1925 YHTGTTFYLSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1925 ~~~~rtyyFsAdSeeEm~~WI~AL~~A 1951 (2182)
.++.|+|||+|+|++||++||.+|++.
T Consensus 81 ~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 81 ETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 25
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.65 E-value=7.4e-16 Score=154.22 Aligned_cols=87 Identities=16% Similarity=0.318 Sum_probs=76.1
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCC--CccceeEecCCcEEEecccccCcceeEEEEcCC-eEEEEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS--TKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLS 1934 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d--~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~-rtyyFs 1934 (2182)
.+|||.|++. ..+.|++|||||+++.|+||+++.+ ..++|.|+|.++.|... + .+++.|.|.... ++|||.
T Consensus 1 ~~G~L~K~~~---~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~-~--~~~~~F~i~~~~~r~~~L~ 74 (91)
T cd01247 1 TNGVLSKWTN---YINGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH-E--FDENRFDISVNENVVWYLR 74 (91)
T ss_pred CceEEEEecc---ccCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC-C--CCCCEEEEEeCCCeEEEEE
Confidence 3799999885 6899999999999999999999866 45899999999877754 2 246899997666 999999
Q ss_pred cCCHHHHHHHHHHHHH
Q psy84 1935 ADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1935 AdSeeEm~~WI~AL~~ 1950 (2182)
|+|++|+++||+||++
T Consensus 75 A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 75 AENSQSRLLWMDSVVR 90 (91)
T ss_pred eCCHHHHHHHHHHHhh
Confidence 9999999999999985
No 26
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.65 E-value=1.2e-15 Score=160.38 Aligned_cols=94 Identities=22% Similarity=0.586 Sum_probs=83.5
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCC--------
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-------- 782 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-------- 782 (2182)
+++|||+|+++. ++.|++|||||++++|+||+++.+..+.|.|+|.++.|...++. .++++|+|..++
T Consensus 1 ~k~G~L~K~~~~---~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~~-~~~~~F~i~~~~~~~~i~~~ 76 (125)
T cd01252 1 DREGWLLKQGGR---VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVEDP-SKPFCFELFSPSDKQQIKAC 76 (125)
T ss_pred CcEEEEEEeCCC---CCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEcccC-CCCeeEEEECCccccccccc
Confidence 479999999865 46999999999999999999999999999999999998877554 478999987754
Q ss_pred -------------eEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy84 783 -------------TTFYLSADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 783 -------------rtyyFaAdSeeEme~WI~AL~~As~~ 808 (2182)
++|+|+|+|++|+++||.+|+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 77 KTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred cccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999998874
No 27
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=1.1e-15 Score=155.52 Aligned_cols=94 Identities=21% Similarity=0.390 Sum_probs=78.8
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcce-EEEEcCCcEEE-eccccC---CCcceEEEEeCCeEEE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH-LFIYLPGFTVA-PAVEVK---SRKYALKIYHTGTTFY 786 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpk-GsI~L~g~tV~-~~~d~k---sRk~aFkL~~~~rtyy 786 (2182)
++|||.++++.-.+++.|++|||+|+++.|+|||+.....+. |+|+|..|... .+.+.. +++++|+|.+++++||
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~ 81 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYI 81 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCceEE
Confidence 589999999743346899999999999999999998665555 99999997743 333222 3479999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q psy84 787 LSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 787 FaAdSeeEme~WI~AL~~A 805 (2182)
|+|+|++++++||++|+.|
T Consensus 82 l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 82 LKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred EEeCCHHHHHHHHHHHHhh
Confidence 9999999999999999987
No 28
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=1.3e-15 Score=156.00 Aligned_cols=93 Identities=23% Similarity=0.382 Sum_probs=78.6
Q ss_pred eeEEEEeecCCCC------CCCCceeEEEEEe-CCeEEEEecC-CCCcceEEEEcCCcEEEe-ccccCCCcceEEEEeCC
Q psy84 712 CEGWLFQRDRKIS------TVPQWIRGWFIIK-GNHFYGFTDK-DSTKAHLFIYLPGFTVAP-AVEVKSRKYALKIYHTG 782 (2182)
Q Consensus 712 keGWL~Kkg~~~~------~~k~WKKRWFVLk-d~~LyYYKdk-~dkkpkGsI~L~g~tV~~-~~d~ksRk~aFkL~~~~ 782 (2182)
++|||.|.+.... ..+.||||||||+ ++.|+||+++ .+..+.|.|+|..|.... +.+..+++++|.|.+++
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~ 80 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPD 80 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECCC
Confidence 4899999998753 3699999999998 5788888886 478999999999876433 34445568999999999
Q ss_pred eEEEEEcCCHHHHHHHHHHHHH
Q psy84 783 TTFYLSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 783 rtyyFaAdSeeEme~WI~AL~~ 804 (2182)
|+|||.|+|++|+++||++|..
T Consensus 81 R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 81 KEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred ceEEEEeCCHHHHHHHHHHHHh
Confidence 9999999999999999999964
No 29
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.62 E-value=2.6e-15 Score=150.84 Aligned_cols=92 Identities=24% Similarity=0.436 Sum_probs=77.1
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEe--CCeEEEEecCCCCcceEEEEcCCcE-EEeccc------cCCCcceEEEEeCC
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIK--GNHFYGFTDKDSTKAHLFIYLPGFT-VAPAVE------VKSRKYALKIYHTG 782 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLk--d~~LyYYKdk~dkkpkGsI~L~g~t-V~~~~d------~ksRk~aFkL~~~~ 782 (2182)
++|||.|++.. ++.||+|||||. ++.|+||+++.+..++|.|+|..++ |..... ...+.+.|.|.+++
T Consensus 1 ~~G~L~K~g~~---~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~ 77 (101)
T cd01235 1 CEGYLYKRGAL---LKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSK 77 (101)
T ss_pred CeEEEEEcCCC---CCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCC
Confidence 58999999965 479999999999 4599999999999999999999954 333211 11356789998888
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhh
Q psy84 783 TTFYLSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 783 rtyyFaAdSeeEme~WI~AL~~As 806 (2182)
++|||+|+|++|+++||.+|++++
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHHhhC
Confidence 999999999999999999998764
No 30
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.62 E-value=2.7e-15 Score=150.22 Aligned_cols=87 Identities=16% Similarity=0.317 Sum_probs=76.0
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC--CcceEEEEcCCcEEEeccccCCCcceEEEEeCC-eEEEEE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS--TKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLS 788 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d--kkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-rtyyFa 788 (2182)
++|||.|++.. +++|++|||||+++.|+||+++.+ ..++|.|+|.+|.|... + .+++.|.|...+ ++|||.
T Consensus 1 ~~G~L~K~~~~---~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~-~--~~~~~F~i~~~~~r~~~L~ 74 (91)
T cd01247 1 TNGVLSKWTNY---INGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH-E--FDENRFDISVNENVVWYLR 74 (91)
T ss_pred CceEEEEeccc---cCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC-C--CCCCEEEEEeCCCeEEEEE
Confidence 37999999965 579999999999999999999776 45799999999987753 2 246899998777 999999
Q ss_pred cCCHHHHHHHHHHHHH
Q psy84 789 ADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 789 AdSeeEme~WI~AL~~ 804 (2182)
|+|++|+++||+||++
T Consensus 75 A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 75 AENSQSRLLWMDSVVR 90 (91)
T ss_pred eCCHHHHHHHHHHHhh
Confidence 9999999999999976
No 31
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.62 E-value=2.2e-15 Score=154.60 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=77.6
Q ss_pred eeEEEEeecCCCC--CCCCceeEEEEEeCCeEEEEecCCC--CcceEEEEcCCcEE-EeccccC------CCcceEEEEe
Q psy84 712 CEGWLFQRDRKIS--TVPQWIRGWFIIKGNHFYGFTDKDS--TKAHLFIYLPGFTV-APAVEVK------SRKYALKIYH 780 (2182)
Q Consensus 712 keGWL~Kkg~~~~--~~k~WKKRWFVLkd~~LyYYKdk~d--kkpkGsI~L~g~tV-~~~~d~k------sRk~aFkL~~ 780 (2182)
++|||+|++.+.. ..+.||+|||||++++|+||+++.+ ..++|.|+|.++.+ ..+.+.. .+.++|+|.+
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t 81 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVH 81 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEe
Confidence 6899999975543 2359999999999999999999876 48999999999754 3332221 3589999999
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHH
Q psy84 781 TGTTFYLSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 781 ~~rtyyFaAdSeeEme~WI~AL~~ 804 (2182)
++++|||.|+|++|+++||.+|++
T Consensus 82 ~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 82 DEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHh
Confidence 999999999999999999999986
No 32
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=99.62 E-value=2.9e-15 Score=161.19 Aligned_cols=125 Identities=22% Similarity=0.321 Sum_probs=87.5
Q ss_pred eEEEEEEcCCCCceEEeccCCCc----cCCCchhHHHHHHHHHHHHHHHhhhccc------CCCCceeecccCCeEEEEE
Q psy84 1032 RYYFVMVGREDNPLYQRGFSCKE----ANDNENKYYYEFIAHASLDLLDEQVWQT------DHMYLKTIDKFNDMMVSAF 1101 (2182)
Q Consensus 1032 i~~laIIGk~d~PLY~~~f~s~~----~~~~~~~l~~qfi~HsSLDiIeEk~~~t------~~~yLg~Ld~~e~~~VygY 1101 (2182)
||+|+|+||+|+.||.++|.... +....++.+.-|.+.+||..|..++.+. .....-....++.|++++|
T Consensus 1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~ 80 (142)
T PF04099_consen 1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF 80 (142)
T ss_dssp EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence 58999999999999999998543 2334455555555555999999999882 1222334455899999999
Q ss_pred EcCCCcEEEEEecCCChHHHHHHHHHHHHHHHHhhc-CCCccccCCcCCCCchhhh
Q psy84 1102 VTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINNWKPDQVA 1156 (2182)
Q Consensus 1102 vT~TgiKFILi~d~~~e~~Ir~fF~~VhelYvd~vm-NPFy~~~~PI~sWs~dQVv 1156 (2182)
+|.||+|||++++...+.....+++.+|++|+|+|+ ||||.+++||++-.|++-+
T Consensus 81 eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l 136 (142)
T PF04099_consen 81 ETPTGLKFVLITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKL 136 (142)
T ss_dssp E-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHH
T ss_pred EcCcCcEEEEEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHH
Confidence 999999999999997756678899999999999988 9999999999998886643
No 33
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.62 E-value=2.5e-15 Score=147.86 Aligned_cols=92 Identities=21% Similarity=0.456 Sum_probs=81.0
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCC--CccceeEecCCcEEEecccccCcceeEEEEcCCeEEEEEc
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS--TKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSA 1935 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d--~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyFsA 1935 (2182)
++|||.|++++ +.+.|++|||||+++.|+||+++.+ ..+.+.|+|.+++|....+...++++|.|.+++++|+|+|
T Consensus 1 k~G~L~kk~~~--~~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a 78 (94)
T cd01250 1 KQGYLYKRSSK--SNKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQA 78 (94)
T ss_pred CcceEEEECCC--cCCCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCccccCCceEEEEEcCCcEEEEEC
Confidence 58999998863 3678999999999999999999875 6788999999998888765544799999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy84 1936 DSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1936 dSeeEm~~WI~AL~~A 1951 (2182)
+|++++++||.||+.+
T Consensus 79 ~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 79 DSEEERDDWISAIQES 94 (94)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999999764
No 34
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.62 E-value=2.2e-15 Score=154.77 Aligned_cols=94 Identities=19% Similarity=0.383 Sum_probs=78.2
Q ss_pred eeEEEEeecCCCC-CCCCceeEEEEEeCCe-------EEEEecCCCCcceEEEEcCCcEEEecc-----ccCCCcceEEE
Q psy84 712 CEGWLFQRDRKIS-TVPQWIRGWFIIKGNH-------FYGFTDKDSTKAHLFIYLPGFTVAPAV-----EVKSRKYALKI 778 (2182)
Q Consensus 712 keGWL~Kkg~~~~-~~k~WKKRWFVLkd~~-------LyYYKdk~dkkpkGsI~L~g~tV~~~~-----d~ksRk~aFkL 778 (2182)
++|||.|++.... +.+.||+|||||++.. |+||+++.+.++.|.|+|..|.+.... ......|.|.|
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i 80 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDI 80 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEE
Confidence 5899999987643 3469999999999865 699999999999999999998654321 11124678999
Q ss_pred EeCCeEEEEEcCCHHHHHHHHHHHHHh
Q psy84 779 YHTGTTFYLSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 779 ~~~~rtyyFaAdSeeEme~WI~AL~~A 805 (2182)
.++.++|||+|+|++||++||.+|++.
T Consensus 81 ~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 81 ETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 35
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.61 E-value=3.4e-15 Score=152.26 Aligned_cols=87 Identities=15% Similarity=0.344 Sum_probs=74.7
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEeCC------eEEEEecCCC-----CccceeEecCCcE-EEecccccCcceeEE
Q psy84 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGN------HFYGFTDKDS-----TKAHLFIYLPGFT-VAPAVEVKSRKYALK 1923 (2182)
Q Consensus 1856 ~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~------~LyYYKde~d-----~kp~GsI~L~g~t-Vs~a~e~ksRk~aFk 1923 (2182)
+.++|||.|+ |.|+||||||++. .|.||+++.. ..|.|+|+|.+|. |....+.+ ++|+|.
T Consensus 2 v~k~GyL~K~-------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k-~~~~f~ 73 (101)
T cd01257 2 VRKSGYLRKQ-------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAK-HRHLIA 73 (101)
T ss_pred ccEEEEEeEe-------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccc-cCeEEE
Confidence 4589999997 3699999999987 7999999854 7899999999965 44444444 579999
Q ss_pred EEcCCeEEEEEcCCHHHHHHHHHHHHH
Q psy84 1924 IYHTGTTFYLSADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1924 I~~~~rtyyFsAdSeeEm~~WI~AL~~ 1950 (2182)
|.+++++|+|+|+|++|+++||++|..
T Consensus 74 i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 74 LYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999999999964
No 36
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.59 E-value=7e-15 Score=149.96 Aligned_cols=87 Identities=15% Similarity=0.321 Sum_probs=74.7
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCC------eEEEEecCCC-----CcceEEEEcCCcEEEe-ccccCCCcceEE
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGN------HFYGFTDKDS-----TKAHLFIYLPGFTVAP-AVEVKSRKYALK 777 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~------~LyYYKdk~d-----kkpkGsI~L~g~tV~~-~~d~ksRk~aFk 777 (2182)
+.++|||.|+ +.|+||||||++. .|.||+++.. ..|+|+|+|.+|.... ..+.+ ++|+|.
T Consensus 2 v~k~GyL~K~-------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k-~~~~f~ 73 (101)
T cd01257 2 VRKSGYLRKQ-------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAK-HRHLIA 73 (101)
T ss_pred ccEEEEEeEe-------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccc-cCeEEE
Confidence 5689999997 2799999999977 7999999754 7899999999987433 23433 579999
Q ss_pred EEeCCeEEEEEcCCHHHHHHHHHHHHH
Q psy84 778 IYHTGTTFYLSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 778 L~~~~rtyyFaAdSeeEme~WI~AL~~ 804 (2182)
|.+++++|+|+|+|++|+++||.+|..
T Consensus 74 i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 74 LYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999999999964
No 37
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.59 E-value=8.4e-15 Score=143.28 Aligned_cols=88 Identities=27% Similarity=0.522 Sum_probs=78.5
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCC--ccceeEecCCcEEEecccccCcceeEEEEcCC-eEEEEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST--KAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLS 1934 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~--kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~-rtyyFs 1934 (2182)
++|||+|+++ ..+.|++|||||+++.|+||+++.+. .+.|.|+|.++.|.... .++++|.|.+++ ++|+|+
T Consensus 1 ~~G~L~k~~~---~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~F~i~~~~~~~~~~~ 74 (91)
T cd01246 1 VEGWLLKWTN---YLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDD---SDDKCFTIDTGGDKTLHLR 74 (91)
T ss_pred CeEEEEEecc---cCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECC---CCCcEEEEEcCCCCEEEEE
Confidence 4899999976 34799999999999999999999877 89999999998776642 247999999988 999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy84 1935 ADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1935 AdSeeEm~~WI~AL~~A 1951 (2182)
|+|.+|+.+||.||+.|
T Consensus 75 a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 75 ANSEEERQRWVDALELA 91 (91)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 99999999999999875
No 38
>KOG0930|consensus
Probab=99.59 E-value=3e-15 Score=169.70 Aligned_cols=99 Identities=24% Similarity=0.535 Sum_probs=89.4
Q ss_pred CCCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEecccccCcceeEEEEcCC----
Q psy84 1853 LVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG---- 1928 (2182)
Q Consensus 1853 Lg~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~---- 1928 (2182)
+-.++.+|||.|+|+ ++.+.||||||||+++|||||.--.+..|+|.|+|.+..|..+++.+ ++|||.|..+.
T Consensus 257 ffnpdREGWLlKlgg--~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~-kP~cfEly~ps~~gq 333 (395)
T KOG0930|consen 257 FFNPDREGWLLKLGG--NRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPK-KPNCFELYIPSNKGQ 333 (395)
T ss_pred ccCccccceeeeecC--CcccchhheeEEeecceeeeeeeccCCCCCcceeccccceeeccCCC-CCCeEEEecCCCCcC
Confidence 456889999999987 47899999999999999999999999999999999999999998877 99999997653
Q ss_pred ------------------eEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy84 1929 ------------------TTFYLSADSQDEFSSWLGCLSQATIA 1954 (2182)
Q Consensus 1929 ------------------rtyyFsAdSeeEm~~WI~AL~~As~~ 1954 (2182)
..|-++|.+.+|+.+||.+|+.++..
T Consensus 334 ~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 334 VIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred eeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 18999999999999999999987753
No 39
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.58 E-value=3.4e-15 Score=151.35 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=80.3
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeC----CeEEEEecCCCCccceeEecCCcEEEecccc-cCcceeEEEEcCCe--E
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKG----NHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV-KSRKYALKIYHTGT--T 1930 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd----~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~-ksRk~aFkI~~~~r--t 1930 (2182)
+.|||.|+++ +..|.||+|||+|.+ ++||||++..+.++.|.|+|..+.|.++.+. .+++|||+|.++.+ +
T Consensus 1 ~~G~l~K~g~--~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~ 78 (98)
T cd01245 1 KKGNLLKRTK--SVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTV 78 (98)
T ss_pred CCCccccCCC--CcccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEecCCCCeE
Confidence 4699999986 347999999999986 9999999999999999999999988887443 45899999999974 9
Q ss_pred EEEEcCCHHHHHHHHHHHHH
Q psy84 1931 FYLSADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1931 yyFsAdSeeEm~~WI~AL~~ 1950 (2182)
||+||++ +|+++||++|+.
T Consensus 79 y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 79 YYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EEEeCCH-HHHHHHHHHHhc
Confidence 9999999 999999999985
No 40
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.57 E-value=1.4e-14 Score=142.63 Aligned_cols=92 Identities=21% Similarity=0.444 Sum_probs=80.3
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC--CcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEEEc
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS--TKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSA 789 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d--kkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyFaA 789 (2182)
++|||.|+++.+ .+.|++|||+|+++.|+||+++.+ ..+.+.|+|.+++|....+...++++|.|.+++++|+|+|
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a 78 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQA 78 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCccccCCceEEEEEcCCcEEEEEC
Confidence 589999988653 368999999999999999999766 6788899999998887655434789999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy84 790 DSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 790 dSeeEme~WI~AL~~A 805 (2182)
+|++++++||.||+.|
T Consensus 79 ~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 79 DSEEERDDWISAIQES 94 (94)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999999764
No 41
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.55 E-value=3.6e-14 Score=138.88 Aligned_cols=88 Identities=27% Similarity=0.521 Sum_probs=78.4
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCC--cceEEEEcCCcEEEeccccCCCcceEEEEeCC-eEEEEE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST--KAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLS 788 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk--kpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-rtyyFa 788 (2182)
++|||+|+++. .+.|++|||||+++.|+||+++.+. .+.+.|+|.++.|.... .++++|.|.+++ ++|+|+
T Consensus 1 ~~G~L~k~~~~---~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~F~i~~~~~~~~~~~ 74 (91)
T cd01246 1 VEGWLLKWTNY---LKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDD---SDDKCFTIDTGGDKTLHLR 74 (91)
T ss_pred CeEEEEEeccc---CCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECC---CCCcEEEEEcCCCCEEEEE
Confidence 48999999865 3699999999999999999999877 89999999999876532 247999999988 999999
Q ss_pred cCCHHHHHHHHHHHHHh
Q psy84 789 ADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 789 AdSeeEme~WI~AL~~A 805 (2182)
|+|.+|+++||.||+.|
T Consensus 75 a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 75 ANSEEERQRWVDALELA 91 (91)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 99999999999999876
No 42
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=99.53 E-value=2.2e-14 Score=144.64 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=96.9
Q ss_pred ceEEEEEEcCCCCceEEeccCCCccC-CCchhHHHHHHHHHHHHHHHhhhcc-cCCCCceeecccCCeEEEEEEcCCCcE
Q psy84 1031 NRYYFVMVGREDNPLYQRGFSCKEAN-DNENKYYYEFIAHASLDLLDEQVWQ-TDHMYLKTIDKFNDMMVSAFVTPTGVK 1108 (2182)
Q Consensus 1031 ~i~~laIIGk~d~PLY~~~f~s~~~~-~~~~~l~~qfi~HsSLDiIeEk~~~-t~~~yLg~Ld~~e~~~VygYvT~TgiK 1108 (2182)
++-.|.||||+|++||.++|+..+.. .+++.+.+..++| +..+|..+..+ .+...+.+|+ +.+|.+..|+|.||+|
T Consensus 2 ave~~~iINksGglifqref~~~et~lnsneyLiLastlh-gV~aI~tq~~p~~gssg~~~l~-~~~f~m~I~qT~TG~k 79 (134)
T COG5122 2 AVEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLH-GVSAILTQTIPLPGSSGRLVLY-FRNFVMTIFQTTTGTK 79 (134)
T ss_pred ceeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechh-hhhhhhhhcccCCCCCceEEEE-eccEEEEEEEecCCcE
Confidence 35789999999999999999876554 3455567788888 55555555444 3344444444 9999999999999999
Q ss_pred EEEEecCCChHHHHHHHHHHHHHHHHhhc-CCCccccCCcCCCCchhhh
Q psy84 1109 FLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINNWKPDQVA 1156 (2182)
Q Consensus 1109 FILi~d~~~e~~Ir~fF~~VhelYvd~vm-NPFy~~~~PI~sWs~dQVv 1156 (2182)
||++.+.+..+ .+--++++|++|.||++ ||||.++|||.+-.||+..
T Consensus 80 FV~~~~k~t~n-a~~ql~kiY~lYsdYV~knPfys~EMPI~c~lFde~l 127 (134)
T COG5122 80 FVFVAEKRTVN-ALFQLQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHL 127 (134)
T ss_pred EEEEecCCchh-HHHHHHHHHHHHHHHhhcCCCCCcccceehhhhhHHH
Confidence 99999775544 44447889999999999 9999999999999998755
No 43
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.53 E-value=2.1e-14 Score=145.60 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=79.9
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeC----CeEEEEecCCCCcceEEEEcCCcEEEecccc-CCCcceEEEEeCC--eE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKG----NHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV-KSRKYALKIYHTG--TT 784 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd----~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~-ksRk~aFkL~~~~--rt 784 (2182)
+.|||.|++++. .+.||+|||+|.+ ++|+||++..+.++.|.|+|..+.|.++.+. .+++|||+|..+. ++
T Consensus 1 ~~G~l~K~g~~~--~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~ 78 (98)
T cd01245 1 KKGNLLKRTKSV--TKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTV 78 (98)
T ss_pred CCCccccCCCCc--ccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEecCCCCeE
Confidence 369999998752 3799999999986 9999999999999999999999999887554 4589999999997 59
Q ss_pred EEEEcCCHHHHHHHHHHHHH
Q psy84 785 FYLSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 785 yyFaAdSeeEme~WI~AL~~ 804 (2182)
||++|++ +|+++||++|++
T Consensus 79 y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 79 YYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EEEeCCH-HHHHHHHHHHhc
Confidence 9999999 999999999976
No 44
>KOG0930|consensus
Probab=99.53 E-value=2e-14 Score=163.15 Aligned_cols=97 Identities=25% Similarity=0.526 Sum_probs=87.4
Q ss_pred CCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCC-e----
Q psy84 709 MPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-T---- 783 (2182)
Q Consensus 709 ~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-r---- 783 (2182)
.++.+|||.|.++++ +++||||||+|+++|||||.--.+++|+|.|+|.+..|..+++.+ ++|||+|+.+. +
T Consensus 259 npdREGWLlKlgg~r--vktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~-kP~cfEly~ps~~gq~I 335 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNR--VKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPK-KPNCFELYIPSNKGQVI 335 (395)
T ss_pred CccccceeeeecCCc--ccchhheeEEeecceeeeeeeccCCCCCcceeccccceeeccCCC-CCCeEEEecCCCCcCee
Confidence 456799999998763 689999999999999999999999999999999999999988886 99999998763 1
Q ss_pred -----------------EEEEEcCCHHHHHHHHHHHHHhhhh
Q psy84 784 -----------------TFYLSADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 784 -----------------tyyFaAdSeeEme~WI~AL~~As~~ 808 (2182)
.|-++|.+.+|+++||.+|+.++..
T Consensus 336 KACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 336 KACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred eeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 7889999999999999999988774
No 45
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.52 E-value=8.2e-14 Score=136.51 Aligned_cols=93 Identities=24% Similarity=0.500 Sum_probs=84.0
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCC---CCccceeEecCCcEEEecccc-----cCcceeEEEEcCC
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD---STKAHLFIYLPGFTVAPAVEV-----KSRKYALKIYHTG 1928 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~---d~kp~GsI~L~g~tVs~a~e~-----ksRk~aFkI~~~~ 1928 (2182)
.++|||.+++. ..+.|++|||||.++.|+||+++. ...+.+.|+|.++.|...... ....++|.|.+++
T Consensus 2 ~~~G~L~~~~~---~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 2 IKEGWLLKKSS---SRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPN 78 (104)
T ss_dssp EEEEEEEEEES---SSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETT
T ss_pred EEEEEEEEECC---CCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCC
Confidence 48999999984 457999999999999999999997 689999999999988887554 4689999999999
Q ss_pred -eEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1929 -TTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1929 -rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
++|+|+|+|++++..||.+|+.|+
T Consensus 79 ~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 79 GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 599999999999999999999985
No 46
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=9.2e-14 Score=141.14 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=73.1
Q ss_pred EEEEeecCCC-CCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCc-EEEec-ccccCcceeEEEEcCCeEEEEEcC
Q psy84 1860 GWLFQRDRKI-STVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGF-TVAPA-VEVKSRKYALKIYHTGTTFYLSAD 1936 (2182)
Q Consensus 1860 GWL~KKg~k~-s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~-tVs~a-~e~ksRk~aFkI~~~~rtyyFsAd 1936 (2182)
|.|.|+...+ -..++||+|||||++..|+||+++. ..+.|+|+|... .|+.+ +....++|+|+|.+++++|||.|+
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~ 83 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFE 83 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECC
Confidence 4556655322 1347999999999999999999876 689999999993 33333 333446799999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy84 1937 SQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1937 SeeEm~~WI~AL~~A 1951 (2182)
|++|+++||.||+++
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999864
No 47
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=6.4e-14 Score=147.16 Aligned_cols=94 Identities=22% Similarity=0.377 Sum_probs=76.4
Q ss_pred CceEEEEEe-ecCCCCCCCCceEEEEEEeCCeEEEEecCCC---CccceeEecCCcEEEecc----cccCcceeEEEEcC
Q psy84 1856 PDCEGWLFQ-RDRKISTVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPGFTVAPAV----EVKSRKYALKIYHT 1927 (2182)
Q Consensus 1856 ~dkeGWL~K-Kg~k~s~~K~WKKRWFVLkd~~LyYYKde~d---~kp~GsI~L~g~tVs~a~----e~ksRk~aFkI~~~ 1927 (2182)
++..|||.- +.. ++.+.|+||||||++++|+||+.+.+ ..|.|.|+|.+|.+.... +...|+++|.|..-
T Consensus 1 ~~~~GfL~~~q~~--~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDT--SGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEecc--CCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 467999996 443 47899999999999999999997765 679999999998776652 23359999999542
Q ss_pred --C-----------------e-EEEEEcCCHHHHHHHHHHHHHH
Q psy84 1928 --G-----------------T-TFYLSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1928 --~-----------------r-tyyFsAdSeeEm~~WI~AL~~A 1951 (2182)
. + -|+|+|||.+|+++||.||++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 1 2 2679999999999999999875
No 48
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.49 E-value=1.5e-13 Score=140.29 Aligned_cols=91 Identities=23% Similarity=0.483 Sum_probs=70.6
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEe-CCeEEEEecCCCCccceeEecCCcEEEecc---cccCcceeEEEEc------
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIK-GNHFYGFTDKDSTKAHLFIYLPGFTVAPAV---EVKSRKYALKIYH------ 1926 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLk-d~~LyYYKde~d~kp~GsI~L~g~tVs~a~---e~ksRk~aFkI~~------ 1926 (2182)
.++|||.|+++ ..+.|++|||||+ ++.|+||+++......|.|+|.+++|..+. ....+.++|.|..
T Consensus 2 ~k~G~L~K~g~---~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~ 78 (102)
T cd01241 2 VKEGWLHKRGE---YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTTV 78 (102)
T ss_pred cEEEEEEeecC---CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCCcc
Confidence 48999999986 5789999999999 788998988765555688888887764431 1224678999972
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1927 TGTTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1927 ~~rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
..|+ |+|+|++||++||.||+.++
T Consensus 79 ~~r~--f~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 79 IERT--FHVESPEEREEWIHAIQTVA 102 (102)
T ss_pred cCEE--EEeCCHHHHHHHHHHHHhhC
Confidence 2354 46999999999999998763
No 49
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.49 E-value=2.9e-13 Score=132.64 Aligned_cols=93 Identities=24% Similarity=0.495 Sum_probs=83.5
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCC---CCcceEEEEcCCcEEEecccc-----CCCcceEEEEeCC
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD---STKAHLFIYLPGFTVAPAVEV-----KSRKYALKIYHTG 782 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~---dkkpkGsI~L~g~tV~~~~d~-----ksRk~aFkL~~~~ 782 (2182)
.++|||.+++.. .+.|++|||||.++.|+||++.. ...+.+.|+|.++.|...... ...+++|.|.+++
T Consensus 2 ~~~G~L~~~~~~---~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 2 IKEGWLLKKSSS---RKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPN 78 (104)
T ss_dssp EEEEEEEEEESS---SSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETT
T ss_pred EEEEEEEEECCC---CCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCC
Confidence 479999999943 46999999999999999999987 689999999999998887554 4689999999999
Q ss_pred -eEEEEEcCCHHHHHHHHHHHHHhh
Q psy84 783 -TTFYLSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 783 -rtyyFaAdSeeEme~WI~AL~~As 806 (2182)
+.|+|+|+|++++..||.+|+.|+
T Consensus 79 ~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 79 GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 599999999999999999999885
No 50
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=2.6e-13 Score=135.16 Aligned_cols=99 Identities=16% Similarity=0.330 Sum_probs=86.6
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEeccc-cCCCcceEEEEeCC-------
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE-VKSRKYALKIYHTG------- 782 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d-~ksRk~aFkL~~~~------- 782 (2182)
...|||...+.+.. .++-|+|||||++.||+|||+.++++++++|+|++..|+.+++ ..+++|+|+|.+++
T Consensus 2 irkgwl~~~n~~~m-~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd 80 (110)
T cd01256 2 IRKGWLSISNVGIM-KGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKD 80 (110)
T ss_pred eeeeeEEeecccee-cCCCcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcccccccc
Confidence 37899999887643 3569999999999999999999999999999999999988754 45688999999875
Q ss_pred -eEEEEEcCCHHHHHHHHHHHHHhhhhcc
Q psy84 783 -TTFYLSADSQDEFSSWLGCLSQATIAHD 810 (2182)
Q Consensus 783 -rtyyFaAdSeeEme~WI~AL~~As~~~~ 810 (2182)
++..|+|+|+++++.|.+.+-+|.+.+.
T Consensus 81 ~k~lel~~~~~e~vdswkasflragvype 109 (110)
T cd01256 81 YKQLELGCETLEEVDSWKASFLRAGVYPE 109 (110)
T ss_pred hheeeecCCCHHHHHHHHHHHHhccccCC
Confidence 4777999999999999999999998764
No 51
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.45 E-value=4.1e-13 Score=136.47 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=72.9
Q ss_pred EEEEeecCCCC-CCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEE-ec-cccCCCcceEEEEeCCeEEEEEcC
Q psy84 714 GWLFQRDRKIS-TVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVA-PA-VEVKSRKYALKIYHTGTTFYLSAD 790 (2182)
Q Consensus 714 GWL~Kkg~~~~-~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~-~~-~d~ksRk~aFkL~~~~rtyyFaAd 790 (2182)
|.|.|+...+. ..+.||+|||+|++..|+||+++. ..+.|+|+|...... .+ +....++|+|+|.+++++|||.|+
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~ 83 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFE 83 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECC
Confidence 34455543332 247999999999999999999876 699999999995433 22 333446799999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy84 791 SQDEFSSWLGCLSQA 805 (2182)
Q Consensus 791 SeeEme~WI~AL~~A 805 (2182)
|++|+++||.||+++
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999864
No 52
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.45 E-value=2.9e-13 Score=142.32 Aligned_cols=95 Identities=20% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC---CcceEEEEcCCcEEEecc----ccCCCcceEEEEeC-
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPGFTVAPAV----EVKSRKYALKIYHT- 781 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d---kkpkGsI~L~g~tV~~~~----d~ksRk~aFkL~~~- 781 (2182)
++..|||+.....+ +++.|+||||||+|++|+||+.+.+ +.|.|.|+|.+|.+.... +...|+|+|.|...
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~ 79 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWR 79 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEec
Confidence 35789999744333 3799999999999999999997655 689999999998876652 34568999999542
Q ss_pred -C-----------------e-EEEEEcCCHHHHHHHHHHHHHh
Q psy84 782 -G-----------------T-TFYLSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 782 -~-----------------r-tyyFaAdSeeEme~WI~AL~~A 805 (2182)
. + -|+|+|||.+|+++||.||++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 80 PKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 1 2 3679999999999999999875
No 53
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=9e-13 Score=134.52 Aligned_cols=91 Identities=22% Similarity=0.464 Sum_probs=70.3
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEe-CCeEEEEecCCCCcceEEEEcCCcEEEecc---ccCCCcceEEEEeC-----
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIK-GNHFYGFTDKDSTKAHLFIYLPGFTVAPAV---EVKSRKYALKIYHT----- 781 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLk-d~~LyYYKdk~dkkpkGsI~L~g~tV~~~~---d~ksRk~aFkL~~~----- 781 (2182)
.++|||.|++.. .+.|++|||+|+ ++.|+||+++......+.|+|.+++|..+. ....++++|.|...
T Consensus 2 ~k~G~L~K~g~~---~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~ 78 (102)
T cd01241 2 VKEGWLHKRGEY---IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTTV 78 (102)
T ss_pred cEEEEEEeecCC---CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCCcc
Confidence 489999999975 579999999999 788999988655555678888887764431 12346799999832
Q ss_pred -CeEEEEEcCCHHHHHHHHHHHHHhh
Q psy84 782 -GTTFYLSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 782 -~rtyyFaAdSeeEme~WI~AL~~As 806 (2182)
.+ +|+|+|++||++||.||+.++
T Consensus 79 ~~r--~f~a~s~ee~~eWi~ai~~v~ 102 (102)
T cd01241 79 IER--TFHVESPEEREEWIHAIQTVA 102 (102)
T ss_pred cCE--EEEeCCHHHHHHHHHHHHhhC
Confidence 24 446999999999999998763
No 54
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.42 E-value=7.9e-13 Score=134.39 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=76.3
Q ss_pred eEEEEEeecC-----CCCCCCCceEEEEEEeCCeEEEEecCCCC--ccce--eEecCCcEEEecccccCcceeEEEEcCC
Q psy84 1858 CEGWLFQRDR-----KISTVPQWIRGWFIIKGNHFYGFTDKDST--KAHL--FIYLPGFTVAPAVEVKSRKYALKIYHTG 1928 (2182)
Q Consensus 1858 keGWL~KKg~-----k~s~~K~WKKRWFVLkd~~LyYYKde~d~--kp~G--sI~L~g~tVs~a~e~ksRk~aFkI~~~~ 1928 (2182)
++|||.+|.. +....+.|++|||||+++.|+||+++... ...+ .|+|.++.|..+.+...++++|.|.+++
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~ 80 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPD 80 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecC
Confidence 3788885432 22357899999999999999999998543 3344 7888899898887665688999998766
Q ss_pred -eEEEEEcCCHHHHHHHHHHHHHH
Q psy84 1929 -TTFYLSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1929 -rtyyFsAdSeeEm~~WI~AL~~A 1951 (2182)
++|+|+|+++++|+.||.+|+.+
T Consensus 81 ~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 81 GAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC
Confidence 99999999999999999999753
No 55
>KOG3549|consensus
Probab=99.40 E-value=3.8e-13 Score=156.09 Aligned_cols=127 Identities=19% Similarity=0.224 Sum_probs=102.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhccCCCCccccccceEEEeeeCCCCCcceEEEec--CCcceEEeccCCCChhhhcCCc
Q psy84 167 DHPIENIRNSAKGLSELADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCIIPS--FHGIHQIGDIKCNSTAYQSGKI 244 (2182)
Q Consensus 167 ~e~e~~il~~~~~L~~i~D~I~~~~~dpll~q~a~l~~V~L~K~~~e~LG~~I~~~--~~g~h~VsrI~~gsPAd~sg~L 244 (2182)
.|++.--+.+.+.|+.|-..=+-|-..|-+ ..--+.|+|++..-++||++|+++ .+-+++|++|-++-.||.+|+|
T Consensus 22 sep~~~RL~Ltke~L~iQkqdVvcvsG~p~--~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~L 99 (505)
T KOG3549|consen 22 SEPEPLRLNLTKELLSIQKQDVVCVSGPPM--ESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQL 99 (505)
T ss_pred CCccchhhhhHHHHhhhhccceEecCCCCc--cCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCce
Confidence 345555678888888877543333344422 334467999998888999999988 5677899999999999999999
Q ss_pred CCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEEecCCCCcccccccc
Q psy84 245 ECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYM 296 (2182)
Q Consensus 245 ~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lkkrP~~t~~~~~~~~ 296 (2182)
.+||.|+||||+.|..++|+|||++||++++.|||+|+.-..++ .|-+.++
T Consensus 100 FvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~lr~Ap-aFLklpL 150 (505)
T KOG3549|consen 100 FVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVKHLRAAP-AFLKLPL 150 (505)
T ss_pred EeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeHhhhcCc-HHhcCcc
Confidence 99999999999999999999999999999999999997655554 5555555
No 56
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.40 E-value=1.4e-12 Score=132.47 Aligned_cols=94 Identities=21% Similarity=0.352 Sum_probs=75.2
Q ss_pred eeEEEEeecC-----CCCCCCCceeEEEEEeCCeEEEEecCCCC--cceE--EEEcCCcEEEeccccCCCcceEEEEeCC
Q psy84 712 CEGWLFQRDR-----KISTVPQWIRGWFIIKGNHFYGFTDKDST--KAHL--FIYLPGFTVAPAVEVKSRKYALKIYHTG 782 (2182)
Q Consensus 712 keGWL~Kkg~-----~~~~~k~WKKRWFVLkd~~LyYYKdk~dk--kpkG--sI~L~g~tV~~~~d~ksRk~aFkL~~~~ 782 (2182)
++|||.++.. .....+.|++|||||+++.|+||+++... ...+ .|+|.++.|..+.+...++++|.|..++
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~ 80 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPD 80 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecC
Confidence 3688875432 11236899999999999999999997543 3333 7889899888876655588999998776
Q ss_pred -eEEEEEcCCHHHHHHHHHHHHHh
Q psy84 783 -TTFYLSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 783 -rtyyFaAdSeeEme~WI~AL~~A 805 (2182)
++|+|+|+|+++|+.||.+|+.|
T Consensus 81 ~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 81 GAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC
Confidence 99999999999999999999754
No 57
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.37 E-value=9.5e-13 Score=134.51 Aligned_cols=95 Identities=19% Similarity=0.387 Sum_probs=77.0
Q ss_pred eEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCC--cceEEEEcCCcEEEeccccCCCcceEEEEeCC----eEEE
Q psy84 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST--KAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG----TTFY 786 (2182)
Q Consensus 713 eGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk--kpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~----rtyy 786 (2182)
..||........++++||+|||+|+++.|+|||++++. .+.+.|.|.||.|.+......++|+|++..+. ++|+
T Consensus 4 ~~~l~~~~~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~ 83 (106)
T cd01237 4 ADYLKYFKPKKLTLKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVW 83 (106)
T ss_pred HHHHHHhCcchhhhhhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEE
Confidence 34554444444456899999999999999999997654 55667888999988765545578999999775 8999
Q ss_pred EEcCCHHHHHHHHHHHHHhhh
Q psy84 787 LSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 787 FaAdSeeEme~WI~AL~~As~ 807 (2182)
|.|+|++++.+||+|++.|+.
T Consensus 84 l~cdsEeqya~Wmaa~rlas~ 104 (106)
T cd01237 84 LRCDNEKQYAKWMAACRLASK 104 (106)
T ss_pred EECCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999874
No 58
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=4.8e-12 Score=133.10 Aligned_cols=94 Identities=21% Similarity=0.426 Sum_probs=80.3
Q ss_pred eEEEEEeecCCCC-C-C-------------CCceEEEEEEeCCeEEEEecCCCCccceeEecCC-cEEEeccc-------
Q psy84 1858 CEGWLFQRDRKIS-T-V-------------PQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAVE------- 1914 (2182)
Q Consensus 1858 keGWL~KKg~k~s-~-~-------------K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g-~tVs~a~e------- 1914 (2182)
++||++|++++.. + . ..|++|||||++..|.||+++.+..++|+|.|+. |.|.....
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~ 80 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAV 80 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccc
Confidence 5899999887422 1 1 1699999999999999999999999999999987 88876532
Q ss_pred ----ccCcceeEEEEcCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy84 1915 ----VKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1915 ----~ksRk~aFkI~~~~rtyyFsAdSeeEm~~WI~AL~~A 1951 (2182)
...+.+.|+|.++.|+|.|.|+|+.++++||++|+.|
T Consensus 81 ~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 81 ELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 2457899999999999999999999999999999875
No 59
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.34 E-value=1.3e-12 Score=122.01 Aligned_cols=64 Identities=41% Similarity=0.871 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 7 ADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 7 ~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
..|++++|++||.++ ++.+|.+.|.++.|+|+.|+.|+.+||++|||+.+|||.+|+.+|+.||
T Consensus 1 s~W~~~~V~~WL~~~--~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 1 SEWSVEDVSEWLKSL--GLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GGTSHHHHHHHHHHT--TGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHC--CCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 379999999999998 5999999999999999999999999999999999999999999999987
No 60
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.32 E-value=3.2e-12 Score=130.73 Aligned_cols=85 Identities=19% Similarity=0.432 Sum_probs=72.3
Q ss_pred CCCCCceEEEEEEeCCeEEEEecCCCC--ccceeEecCCcEEEecccccCcceeEEEEcCC----eEEEEEcCCHHHHHH
Q psy84 1870 STVPQWIRGWFIIKGNHFYGFTDKDST--KAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG----TTFYLSADSQDEFSS 1943 (2182)
Q Consensus 1870 s~~K~WKKRWFVLkd~~LyYYKde~d~--kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~----rtyyFsAdSeeEm~~ 1943 (2182)
...|.||||||+|+++.|+|||++++. .+.+.|.|.+|.|.+......++|+|++.++. ++|||.|+|++++.+
T Consensus 15 ~~~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~ 94 (106)
T cd01237 15 LTLKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAK 94 (106)
T ss_pred hhhhhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHHH
Confidence 356889999999999999999998654 55667777889888875445568999999775 999999999999999
Q ss_pred HHHHHHHHhhh
Q psy84 1944 WLGCLSQATIA 1954 (2182)
Q Consensus 1944 WI~AL~~As~~ 1954 (2182)
||+|++.|+.+
T Consensus 95 Wmaa~rlas~g 105 (106)
T cd01237 95 WMAACRLASKG 105 (106)
T ss_pred HHHHHHHhhCC
Confidence 99999999853
No 61
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.30 E-value=9e-12 Score=121.02 Aligned_cols=78 Identities=28% Similarity=0.388 Sum_probs=71.9
Q ss_pred EEEeeeCCCCCcceEEEecCCc---ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEE
Q psy84 204 LATLKKRPGEHLGFCIIPSFHG---IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 280 (2182)
Q Consensus 204 ~V~L~K~~~e~LG~~I~~~~~g---~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~ 280 (2182)
.|+|.|...++|||+|+...+. .+||+.|.++|||++.| |++||+|++|||+.|.+|+|.+++++|+.+++.|+|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 4788887888999999988653 77999999999999999 9999999999999999999999999999999999998
Q ss_pred EE
Q psy84 281 LK 282 (2182)
Q Consensus 281 lk 282 (2182)
|.
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 83
No 62
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.29 E-value=1.4e-11 Score=122.95 Aligned_cols=86 Identities=22% Similarity=0.491 Sum_probs=77.3
Q ss_pred EEEEeecCCCCCCCCceEEEEEE--eCCeEEEEecCCCCccceeEecCCcEEEecccccCcceeEEEEcCCeEEEEEcCC
Q psy84 1860 GWLFQRDRKISTVPQWIRGWFII--KGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADS 1937 (2182)
Q Consensus 1860 GWL~KKg~k~s~~K~WKKRWFVL--kd~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyFsAdS 1937 (2182)
|||.|+..+ .+++|+|||||| ..+.|.||+++.+..++|.|+|..+.|+... +...|.|.+....|+|.|.+
T Consensus 1 G~llKkrr~--~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~----~~~~I~idsg~~i~hLKa~s 74 (89)
T PF15409_consen 1 GWLLKKRRK--PLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK----KSRRIDIDSGDEIWHLKAKS 74 (89)
T ss_pred Ccceeeccc--cCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC----CCCEEEEEcCCeEEEEEcCC
Confidence 899999874 589999999999 8999999999988899999999998887752 34579998888999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy84 1938 QDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1938 eeEm~~WI~AL~~A 1951 (2182)
+++.+.||.||+.|
T Consensus 75 ~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 75 QEDFQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999986
No 63
>KOG0609|consensus
Probab=99.28 E-value=1.3e-11 Score=151.96 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=107.4
Q ss_pred HHHHHHHhHhh----ccCCCcccCC-----cccceeeEeecCCCCCcceEEEecCCcceEEeccCCCChhhhcCcccCCC
Q psy84 1319 KGLSELADEMI----REIHDPLLLQ-----PSSLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGD 1389 (2182)
Q Consensus 1319 ~~L~~icD~Il----~~spD~l~~q-----~a~le~V~L~K~~~e~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GD 1389 (2182)
+.|...+|.|. +...+|.+.. ...++.|+++|+.+++||.+|+-..++..||+||.+|+.|+++|.||+||
T Consensus 90 ~~~l~ahd~vas~~~~~~~~p~l~~~~~e~~~~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD 169 (542)
T KOG0609|consen 90 QALLQAHDTVASKYDQPPFSPYLNPESPEPVEAVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGD 169 (542)
T ss_pred hHHHHHhHHHhhccCCCCCccccCCCcccccceeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeecc
Confidence 34445677766 3333343333 33488889999889999999999866678999999999999999999999
Q ss_pred eEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEeCCCCC--ccccccccc---------CCCCCccccccccccccCCC
Q psy84 1390 EIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHS--KILGQIYMK---------PYRLPSKKQVSYRWFLDDKI 1458 (2182)
Q Consensus 1390 eIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKkrP~~~--~~~~q~~~k---------p~r~p~~~~~~~~~r~~~~~ 1458 (2182)
+|.+|||+.|.|..+.++.++|+++.+ ++|+|.+|..- .....+||| .-.+||+.+ .+.++-||-|
T Consensus 170 ~i~EvNGi~v~~~~~~e~q~~l~~~~G--~itfkiiP~~~~~~~~~~~~vra~FdYdP~~D~~IPCkEa-gl~F~~GDIL 246 (542)
T KOG0609|consen 170 EILEVNGISVANKSPEELQELLRNSRG--SITFKIIPSYRPPPQQQVVFVRALFDYDPKEDDLIPCKEA-GLPFQRGDIL 246 (542)
T ss_pred chheecCeecccCCHHHHHHHHHhCCC--cEEEEEcccccCCCceeeeeehhhcCcCcccCCcccchhc-CCccccccee
Confidence 999999999999999999999999874 55666677543 222348884 467999998 8888878765
No 64
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.28 E-value=3.1e-12 Score=120.02 Aligned_cols=65 Identities=38% Similarity=0.881 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHhhccchhhhhHHhHhhcccCc-hhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 6 V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G-~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
|..|++++|++||.++ ++.+|.+.|.+++|+| ..|+.|+.++|++|||+..|||..||++|+.||
T Consensus 1 v~~w~~~~v~~WL~~~--gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 1 VSTWSPEDVAEWLKSL--GLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp GGGHCHHHHHHHHHHT--TCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC--CcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 5789999999999999 5899999999999999 999999999999999999999999999999986
No 65
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.28 E-value=2.3e-11 Score=127.45 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=83.8
Q ss_pred eEEEEEeecC-----CCC--CCCCceEEEEEEeCCeEEEEecCCC-------CccceeEecCCcEEEecccccCcceeEE
Q psy84 1858 CEGWLFQRDR-----KIS--TVPQWIRGWFIIKGNHFYGFTDKDS-------TKAHLFIYLPGFTVAPAVEVKSRKYALK 1923 (2182)
Q Consensus 1858 keGWL~KKg~-----k~s--~~K~WKKRWFVLkd~~LyYYKde~d-------~kp~GsI~L~g~tVs~a~e~ksRk~aFk 1923 (2182)
++|+|.+|-. +.. +.+.|+++||||+++.|++||++.. ......|.|.++.+.++.+...|++.|+
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~ 81 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFR 81 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEE
Confidence 6899988742 111 3679999999999999999999954 3456799999988888867777999999
Q ss_pred EEcCC-eEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy84 1924 IYHTG-TTFYLSADSQDEFSSWLGCLSQATIAHD 1956 (2182)
Q Consensus 1924 I~~~~-rtyyFsAdSeeEm~~WI~AL~~As~~~~ 1956 (2182)
|..++ +.|+|+|.+.+||+.||.+|+.|+....
T Consensus 82 L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s 115 (117)
T cd01230 82 LRTADWREFLFQTSSLKELQSWIERINVVAAAFS 115 (117)
T ss_pred EEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 99987 9999999999999999999999986543
No 66
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.26 E-value=6.9e-11 Score=113.64 Aligned_cols=94 Identities=22% Similarity=0.463 Sum_probs=81.7
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCC---CccceeEecCCcEEEeccccc--CcceeEEEEcCCe-E
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPGFTVAPAVEVK--SRKYALKIYHTGT-T 1930 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d---~kp~GsI~L~g~tVs~a~e~k--sRk~aFkI~~~~r-t 1930 (2182)
.++|||.++... ....|++|||+|.+++|+||+++.. ..+.+.|+|.++.|....+.. ...++|.|.+.++ +
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~ 79 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRS 79 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCce
Confidence 479999998862 4568999999999999999999865 578999999999888775542 4689999999986 9
Q ss_pred EEEEcCCHHHHHHHHHHHHHHh
Q psy84 1931 FYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1931 yyFsAdSeeEm~~WI~AL~~As 1952 (2182)
|+|.|+|+++++.|+.+|+.++
T Consensus 80 ~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 80 YLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEEEcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999875
No 67
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.26 E-value=3.1e-11 Score=127.06 Aligned_cols=94 Identities=21% Similarity=0.435 Sum_probs=78.6
Q ss_pred eeEEEEeecCCCCC--C-------------CCceeEEEEEeCCeEEEEecCCCCcceEEEEcCC-cEEEeccc-------
Q psy84 712 CEGWLFQRDRKIST--V-------------PQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAVE------- 768 (2182)
Q Consensus 712 keGWL~Kkg~~~~~--~-------------k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g-~tV~~~~d------- 768 (2182)
++||++|+++.... . ..|++|||||++..|.||+++.+..+.++|.|+. +.|.....
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~ 80 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAV 80 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccc
Confidence 47888887766431 1 2699999999999999999999999999999976 66665432
Q ss_pred ----cCCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHh
Q psy84 769 ----VKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 769 ----~ksRk~aFkL~~~~rtyyFaAdSeeEme~WI~AL~~A 805 (2182)
...+.|.|.|.+++|+|.|.|+|+.++.+||++|+.|
T Consensus 81 ~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 81 ELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1356899999999999999999999999999999876
No 68
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.25 E-value=3.4e-11 Score=126.11 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=81.7
Q ss_pred eeEEEEeecC-----CCC--CCCCceeEEEEEeCCeEEEEecCCC-------CcceEEEEcCCcEEEeccccCCCcceEE
Q psy84 712 CEGWLFQRDR-----KIS--TVPQWIRGWFIIKGNHFYGFTDKDS-------TKAHLFIYLPGFTVAPAVEVKSRKYALK 777 (2182)
Q Consensus 712 keGWL~Kkg~-----~~~--~~k~WKKRWFVLkd~~LyYYKdk~d-------kkpkGsI~L~g~tV~~~~d~ksRk~aFk 777 (2182)
++|+|.++-. ... +.+.|+++||||+++.|++|||+.. ......|.|.++++.++.+...|+++|.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~ 81 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFR 81 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEE
Confidence 5788876641 111 2589999999999999999999754 3455789999998888877777999999
Q ss_pred EEeCC-eEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy84 778 IYHTG-TTFYLSADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 778 L~~~~-rtyyFaAdSeeEme~WI~AL~~As~~~ 809 (2182)
|..++ +.|.|+|.+++||+.||.+|+.|+...
T Consensus 82 L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~ 114 (117)
T cd01230 82 LRTADWREFLFQTSSLKELQSWIERINVVAAAF 114 (117)
T ss_pred EEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 99987 999999999999999999999988753
No 69
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.25 E-value=2.5e-11 Score=117.91 Aligned_cols=78 Identities=28% Similarity=0.388 Sum_probs=71.2
Q ss_pred eeEeecCCCCCcceEEEecCCc---ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEE
Q psy84 1345 LATLKKRPGEHLGFCIIPSFHG---IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 1421 (2182)
Q Consensus 1345 ~V~L~K~~~e~LG~~I~s~~~G---~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~ 1421 (2182)
.|+|.|...++|||+|+...+. .+||+.|.++|||++.| |++||+|++|||+.|.+|+|.+++++|+.++..|+|+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 4788887888999999998653 77999999999999999 9999999999999999999999999999999988887
Q ss_pred EE
Q psy84 1422 LK 1423 (2182)
Q Consensus 1422 LK 1423 (2182)
|.
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 63
No 70
>KOG3550|consensus
Probab=99.24 E-value=2.7e-10 Score=120.66 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=80.0
Q ss_pred cccceEEEeeeCCCCCcceEEEec--CCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCc
Q psy84 199 PSSLDLATLKKRPGEHLGFCIIPS--FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSD 276 (2182)
Q Consensus 199 ~a~l~~V~L~K~~~e~LG~~I~~~--~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~ 276 (2182)
-+.-++|.|-| .+++|||+|-++ -+..++|+||++|+.||+-|.|.-||+++.|||.+|.|-.|+..|++|+.+.+.
T Consensus 88 hahprvvelpk-tdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs 166 (207)
T KOG3550|consen 88 HAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS 166 (207)
T ss_pred CCCCceeecCc-cccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc
Confidence 34556788877 578999999987 477899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCC
Q psy84 277 IFLTLKKRPCH 287 (2182)
Q Consensus 277 VtL~lkkrP~~ 287 (2182)
|.|+|++-|+-
T Consensus 167 vklvvrytpkv 177 (207)
T KOG3550|consen 167 VKLVVRYTPKV 177 (207)
T ss_pred EEEEEecChHH
Confidence 99999888754
No 71
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.23 E-value=6.8e-11 Score=120.69 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=79.2
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecC-----CCCccceeEecCCcEEEecccccCcceeEEEEcCCeEE
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK-----DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTF 1931 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde-----~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rty 1931 (2182)
.++|||.|.+.+ .+.|+.|||+|-++.|.|++.. ......+.|+|.++.|...++ ...+|+|.|.+..++|
T Consensus 3 ikeG~L~K~~~~---~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~-~~~~~~F~I~~~~rsf 78 (101)
T cd01219 3 LKEGSVLKISST---TEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN-LERPHSFLVSGKQRCL 78 (101)
T ss_pred ccceEEEEEecC---CCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC-CCcCceEEEecCCcEE
Confidence 379999999873 4789999999999999999864 223567889999988876533 3479999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHhh
Q psy84 1932 YLSADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1932 yFsAdSeeEm~~WI~AL~~As~ 1953 (2182)
+|+|+|++|+.+||++|+.|+.
T Consensus 79 ~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 79 ELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999874
No 72
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.23 E-value=5.3e-11 Score=118.93 Aligned_cols=86 Identities=22% Similarity=0.481 Sum_probs=76.5
Q ss_pred EEEEeecCCCCCCCCceeEEEEE--eCCeEEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEEEcCC
Q psy84 714 GWLFQRDRKISTVPQWIRGWFII--KGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADS 791 (2182)
Q Consensus 714 GWL~Kkg~~~~~~k~WKKRWFVL--kd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyFaAdS 791 (2182)
|||.|+.... +++|+|||||| ..+.|.||+++.+...+|.|+|..+.|.... +.-.|.|...+..|+|.|.|
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~----~~~~I~idsg~~i~hLKa~s 74 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK----KSRRIDIDSGDEIWHLKAKS 74 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC----CCCEEEEEcCCeEEEEEcCC
Confidence 8999998764 58999999999 8999999999988899999999999887642 34479998888999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy84 792 QDEFSSWLGCLSQA 805 (2182)
Q Consensus 792 eeEme~WI~AL~~A 805 (2182)
+++.+.|+.||+.|
T Consensus 75 ~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 75 QEDFQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999987
No 73
>KOG3209|consensus
Probab=99.22 E-value=2e-11 Score=151.43 Aligned_cols=136 Identities=24% Similarity=0.357 Sum_probs=102.9
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHhHhhccCCCcccCC-cccceeeEeec
Q psy84 1272 LDRPPFSGQLAFIDKKAELLRLSLEMAFSGQRGKFADHPIENIRNSAKGLSELADEMIREIHDPLLLQ-PSSLDLATLKK 1350 (2182)
Q Consensus 1272 LdR~pF~~~~df~~~r~~I~~l~~eLa~~vq~D~~a~e~e~~i~~ic~~L~~icD~Il~~spD~l~~q-~a~le~V~L~K 1350 (2182)
.|..|-.+-.+ ..|++|+...|++.|..++++.++- |+. ...+ |+.++ +..--.|+|.+
T Consensus 702 iDG~pV~GksH-----~~vv~Lm~~AArnghV~LtVRRkv~------------~~~-~~rs--p~~s~~~~~~yDV~lhR 761 (984)
T KOG3209|consen 702 IDGIPVEGKSH-----SEVVDLMEAAARNGHVNLTVRRKVR------------TGP-ARRS--PRNSAAPSGPYDVVLHR 761 (984)
T ss_pred ecCeeccCccH-----HHHHHHHHHHHhcCceEEEEeeeee------------ecc-ccCC--cccccCCCCCeeeEEec
Confidence 45556555443 4799999999999999999998841 221 1111 11111 22245788999
Q ss_pred CCCCCcceEEEecC-CcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEeCCCCC
Q psy84 1351 RPGEHLGFCIIPSF-HGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 1429 (2182)
Q Consensus 1351 ~~~e~LG~~I~s~~-~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKkrP~~~ 1429 (2182)
++.++|||.|.++- ...-=|.+|++||||||||+|.|||.|+.||||+|+.++|.++|++||+++..|+|++ +|.+.
T Consensus 762 ~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtI--ip~ee 839 (984)
T KOG3209|consen 762 KENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTI--IPPEE 839 (984)
T ss_pred ccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEE--cChhc
Confidence 99999999999982 2222399999999999999999999999999999999999999999999776666655 66543
No 74
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.22 E-value=9.4e-11 Score=119.59 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=80.4
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCC---ccceeEecCCcEEEecccccCcceeEEEEcCCeEEEE
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST---KAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYL 1933 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~---kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyF 1933 (2182)
.++|||.|.+++ ..|+|+||.+.|.+||+.+...+. .+.|.|+|.+..|...++....+|+|.|.++.++|.|
T Consensus 3 ikEG~L~K~~~k----~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l 78 (99)
T cd01220 3 IRQGCLLKLSKK----GLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITV 78 (99)
T ss_pred eeEEEEEEEeCC----CCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEE
Confidence 379999999874 379999999999999988765433 5899999999988877664447899999999999999
Q ss_pred EcCCHHHHHHHHHHHHHHhh
Q psy84 1934 SADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1934 sAdSeeEm~~WI~AL~~As~ 1953 (2182)
+|.|++|+.+||++|+.|+.
T Consensus 79 ~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 79 AASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred ECCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999874
No 75
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.20 E-value=1.2e-11 Score=115.62 Aligned_cols=63 Identities=41% Similarity=0.868 Sum_probs=59.5
Q ss_pred CCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHH
Q psy84 1149 NWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213 (2182)
Q Consensus 1149 sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr 1213 (2182)
.|++++|+.||.+++ +.+|.+.|.++.|+|+.|+.|+.+||++|||..+|||.+|+.+|+.||
T Consensus 2 ~W~~~~V~~WL~~~~--l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 2 EWSVEDVSEWLKSLG--LEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GTSHHHHHHHHHHTT--GGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCC--CHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 699999999999885 679999999999999999999999999999999999999999999997
No 76
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.20 E-value=2.1e-10 Score=110.22 Aligned_cols=94 Identities=22% Similarity=0.455 Sum_probs=81.0
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC---CcceEEEEcCCcEEEeccccC--CCcceEEEEeCCe-E
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPGFTVAPAVEVK--SRKYALKIYHTGT-T 784 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d---kkpkGsI~L~g~tV~~~~d~k--sRk~aFkL~~~~r-t 784 (2182)
.++|||.++.... ...|++|||+|.++.|+||+++.. ..+.+.|+|.++.|....+.. ..+++|.|.+... .
T Consensus 2 ~~~G~l~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~ 79 (102)
T smart00233 2 IKEGWLYKKSGGK--KKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRS 79 (102)
T ss_pred ceeEEEEEeCCCc--cCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCce
Confidence 4799999998731 368999999999999999999765 578899999999888765542 4689999999985 9
Q ss_pred EEEEcCCHHHHHHHHHHHHHhh
Q psy84 785 FYLSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 785 yyFaAdSeeEme~WI~AL~~As 806 (2182)
|+|+|+|++++..|+.+|+.+.
T Consensus 80 ~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 80 YLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEEEcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999875
No 77
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.19 E-value=7.2e-11 Score=118.04 Aligned_cols=94 Identities=16% Similarity=0.347 Sum_probs=79.8
Q ss_pred ceEEEEEeecCCCCCCCC-ceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEeccc-ccCcceeEEEEcCC------
Q psy84 1857 DCEGWLFQRDRKISTVPQ-WIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE-VKSRKYALKIYHTG------ 1928 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~-WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a~e-~ksRk~aFkI~~~~------ 1928 (2182)
.+.|||.-..- +.+++ =|+|||||++.|||||++.+++.++|.|+|.+..|..+++ -.+++|+|.+..++
T Consensus 2 irkgwl~~~n~--~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvyk 79 (110)
T cd01256 2 IRKGWLSISNV--GIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYK 79 (110)
T ss_pred eeeeeEEeecc--ceecCCCcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCccccccc
Confidence 47999998775 34444 7899999999999999999999999999999988887754 34588999999774
Q ss_pred --eEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1929 --TTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1929 --rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
++.-++|+|++++..|...+-+|-
T Consensus 80 d~k~lel~~~~~e~vdswkasflrag 105 (110)
T cd01256 80 DYKQLELGCETLEEVDSWKASFLRAG 105 (110)
T ss_pred chheeeecCCCHHHHHHHHHHHHhcc
Confidence 466799999999999999887764
No 78
>PF06663 DUF1170: Protein of unknown function (DUF1170); InterPro: IPR010599 This region of unknown function is situated between the IPR001478 from INTERPRO and IPR001849 from INTERPRO domains in a cytoplasmic and membrane associated protein which appears to function as an adapter protein or regulator of Ras signalling pathways [].; GO: 0009966 regulation of signal transduction, 0005737 cytoplasm, 0016020 membrane
Probab=99.18 E-value=2.8e-11 Score=132.97 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=94.2
Q ss_pred cccCCCCccccccccCCC----ccccccccccCCCCCCCCCCCCCchhHHHHHhhhhhhhhcccccCCCCCchhhhcccC
Q psy84 1536 EESISSPTSVRLYHPKPR----LPVQRRATITGTGASPTSKRAPLNLEQLWHELKLEKEWRLSGKQRKGEKSTSELLLSA 1611 (2182)
Q Consensus 1536 ~~~~~~~~~~rly~pkPr----~~~qrr~t~~~~~~~p~~k~~~~~~~~~w~~~k~~~~~~~~~~~~~~~~~~s~l~~~~ 1611 (2182)
++|+++|+++|||||+|+ .|+..++.+++.+.. ..+++ .+ -.++++++||+||++.
T Consensus 4 s~k~ek~AilDLyIPPPPs~PY~PRde~g~~~~~~~~-r~~~~------------------~~-~~kGSESPNSfLDqE~ 63 (189)
T PF06663_consen 4 SSKREKPAILDLYIPPPPSVPYTPRDEKGSFSYEDSS-RPKQG------------------LP-GSKGSESPNSFLDQES 63 (189)
T ss_pred cccccchhhhhcccCCCCCCCCCCccccCCcccCccc-ccccC------------------CC-CCCCCCCCccccchhh
Confidence 568899999999999999 677788887766543 22333 12 2389999999999999
Q ss_pred CCCCcccCCcccccccCCCCCCccccccccchhhhhcCCCCccccccccccccCCCCCCcccccccccccCCCCCccccc
Q psy84 1612 TSPSEVGSDENKIHLKSAPKACSADCLKSVQSDFVRRNKPDLNLLDSKFIAENEIPGKSLKETDQESKKVNDPSLTEEES 1691 (2182)
Q Consensus 1612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~s~~~~~~ 1691 (2182)
|.+ |.++|.|.+ +.+++.+.+
T Consensus 64 rrr-fti~e~d~~-----~~g~~~e~~----------------------------------------------------- 84 (189)
T PF06663_consen 64 RRR-FTIAESDQL-----PYGYEYEAN----------------------------------------------------- 84 (189)
T ss_pred ccc-ccccccccC-----CcCCccccc-----------------------------------------------------
Confidence 888 888877655 334433322
Q ss_pred ccccchHHHHHHhhccccCC-CCcCCCCCCCccccccccccccccCCCCCCCCCCCCCCcCCCCcccCCCCCCcccCCCC
Q psy84 1692 NMFIPLKERIEIFNKKIDDS-NSVHSMKPKVPAKRYVQNEGFISLTNSPAHRPTEKKPVARPRGKLDKSNSTPVYDFNDR 1770 (2182)
Q Consensus 1692 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~p~~~~~~~~~~~~~n~p~~~~~~~~~~~~~rg~~dks~s~p~yd~~~~ 1770 (2182)
+ ...+++++ +++|..+|++||.+|.|... .++..++. ++.++.++++.+|.++|+
T Consensus 85 ----------~-~~~k~Re~tps~GkpRPlSMP~e~~w~g~---------~~~~~~~~----~~gRk~e~~L~RYlSner 140 (189)
T PF06663_consen 85 ----------R-LPPKRREKTPSYGKPRPLSMPVEYNWVGD---------VDPPSKPR----RSGRKGENSLLRYLSNER 140 (189)
T ss_pred ----------C-cccccccCCcccCCccccccccccccccc---------cCcccccc----cCCCcccchHHHhhccCC
Confidence 1 11233444 78899999999999999942 22333333 333444899999999998
Q ss_pred CCC
Q psy84 1771 PQG 1773 (2182)
Q Consensus 1771 ~~~ 1773 (2182)
+..
T Consensus 141 I~~ 143 (189)
T PF06663_consen 141 IPP 143 (189)
T ss_pred Ccc
Confidence 853
No 79
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.16 E-value=2.5e-10 Score=116.57 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=78.7
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCC-----CCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEE
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD-----STKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTF 785 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~-----dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rty 785 (2182)
.++|||.|.+... +.|+.|||.|-+..|.|++.+. .-...+.|+|.++.|...++ ...+|+|.|....++|
T Consensus 3 ikeG~L~K~~~~~---~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~-~~~~~~F~I~~~~rsf 78 (101)
T cd01219 3 LKEGSVLKISSTT---EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN-LERPHSFLVSGKQRCL 78 (101)
T ss_pred ccceEEEEEecCC---CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC-CCcCceEEEecCCcEE
Confidence 3799999999763 5899999999988999999642 23566789999998875533 3479999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHhhh
Q psy84 786 YLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 786 yFaAdSeeEme~WI~AL~~As~ 807 (2182)
+|+|+|++|+++||++|+.|+.
T Consensus 79 ~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 79 ELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999864
No 80
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.15 E-value=1.8e-10 Score=109.85 Aligned_cols=92 Identities=27% Similarity=0.489 Sum_probs=80.5
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCC---CccceeEecCCcEEEecccccCcceeEEEEcCC-eEEEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYL 1933 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d---~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~-rtyyF 1933 (2182)
++|||+++... ....|++|||+|.++.|++|+...+ ..+.+.|+|.++.|....+.....++|.|.+.. +.|+|
T Consensus 1 ~~G~l~~~~~~--~~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~ 78 (96)
T cd00821 1 KEGYLLKKTGK--LRKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLL 78 (96)
T ss_pred CcchhhhhhCh--hhCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEE
Confidence 47999998862 1368999999999999999998866 689999999998888876655578999999988 99999
Q ss_pred EcCCHHHHHHHHHHHHHH
Q psy84 1934 SADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1934 sAdSeeEm~~WI~AL~~A 1951 (2182)
+|+|++++..|+.+|+.|
T Consensus 79 ~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 79 QAESEEEREEWIEALQSA 96 (96)
T ss_pred EeCCHHHHHHHHHHHhcC
Confidence 999999999999999864
No 81
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.14 E-value=3.9e-10 Score=115.15 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=79.7
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCC---cceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEE
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST---KAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYL 787 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk---kpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyF 787 (2182)
.++|||.|..++ +.|+|+||.+.+..||+.+..... ...+.|+|.++.|...++....+|+|.|..+.++|.|
T Consensus 3 ikEG~L~K~~~k----~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l 78 (99)
T cd01220 3 IRQGCLLKLSKK----GLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITV 78 (99)
T ss_pred eeEEEEEEEeCC----CCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEE
Confidence 379999999876 369999999999888888764433 5889999999999877664456899999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhhh
Q psy84 788 SADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 788 aAdSeeEme~WI~AL~~As~ 807 (2182)
+|.|++|+++||.+|++|+.
T Consensus 79 ~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 79 AASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred ECCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999874
No 82
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.13 E-value=3.6e-10 Score=117.60 Aligned_cols=92 Identities=16% Similarity=0.299 Sum_probs=57.1
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEe-CCeEEEEecC-------------CCCccceeEecCC--cEEEec----ccccC
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIK-GNHFYGFTDK-------------DSTKAHLFIYLPG--FTVAPA----VEVKS 1917 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLk-d~~LyYYKde-------------~d~kp~GsI~L~g--~tVs~a----~e~ks 1917 (2182)
++|||+|++.. ..+.||+|||||. ++.|.|||.+ ......|.+.... +.+... .....
T Consensus 1 k~G~l~K~~~~--~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNK--FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEEE--TT--S-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEEEecCC--CCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 58999998873 3689999999999 9999999993 2222223222211 222210 01112
Q ss_pred cceeEEEEcCCeEEEEEcCCHHHHHHHHHHHHHH
Q psy84 1918 RKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1918 Rk~aFkI~~~~rtyyFsAdSeeEm~~WI~AL~~A 1951 (2182)
-...|.|.++.++|+|.|++.+|+..||+||+.|
T Consensus 79 ~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 3567888899999999999999999999999876
No 83
>KOG3938|consensus
Probab=99.12 E-value=3.7e-11 Score=136.63 Aligned_cols=82 Identities=26% Similarity=0.226 Sum_probs=76.1
Q ss_pred ceeeEeecCCCCCcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEE
Q psy84 1343 LDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTL 1422 (2182)
Q Consensus 1343 le~V~L~K~~~e~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~L 1422 (2182)
-.+|.++|..+ .||++|..++.|..||.+|++||..|+...|+|||.|..|||++|+||+|++|+++||+.+.+-+++|
T Consensus 127 ~kEv~v~Ksed-alGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftl 205 (334)
T KOG3938|consen 127 AKEVEVVKSED-ALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTL 205 (334)
T ss_pred ceeEEEEeccc-ccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEE
Confidence 35778887555 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeC
Q psy84 1423 KKR 1425 (2182)
Q Consensus 1423 Kkr 1425 (2182)
|.+
T Consensus 206 rLi 208 (334)
T KOG3938|consen 206 RLI 208 (334)
T ss_pred Eee
Confidence 844
No 84
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.12 E-value=4e-10 Score=118.31 Aligned_cols=95 Identities=19% Similarity=0.425 Sum_probs=68.6
Q ss_pred eEEEEEeecC-----CCC--CCCCceEEEEEEeCCeEEEEecCC--------------CCccceeEecCCcEEEeccccc
Q psy84 1858 CEGWLFQRDR-----KIS--TVPQWIRGWFIIKGNHFYGFTDKD--------------STKAHLFIYLPGFTVAPAVEVK 1916 (2182)
Q Consensus 1858 keGWL~KKg~-----k~s--~~K~WKKRWFVLkd~~LyYYKde~--------------d~kp~GsI~L~g~tVs~a~e~k 1916 (2182)
++|||++|.. ++. ..+.|+..|+||++..|++|+++. ...+.+.|.|.++.+..+.+..
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~ 81 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT 81 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence 7999988632 223 568899999999999999999941 1234567999998888887777
Q ss_pred CcceeEEEEcCC-eEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1917 SRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1917 sRk~aFkI~~~~-rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
.|+|+|.|.+.+ ..|.|+|.|++||++||++|+.++
T Consensus 82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 799999999886 999999999999999999999876
No 85
>KOG3209|consensus
Probab=99.12 E-value=1.4e-10 Score=143.99 Aligned_cols=84 Identities=26% Similarity=0.408 Sum_probs=73.9
Q ss_pred ceEEEeeeCCCCCcceEEEecC-CcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEE
Q psy84 202 LDLATLKKRPGEHLGFCIIPSF-HGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 280 (2182)
Q Consensus 202 l~~V~L~K~~~e~LG~~I~~~~-~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~ 280 (2182)
-.-|.|.++++++|||.|.++- .-.-=|++|.+||||||||+|.|||.|+.||||+|+.++|.++|++||+++..|||+
T Consensus 754 ~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLt 833 (984)
T KOG3209|consen 754 PYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLT 833 (984)
T ss_pred CeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEE
Confidence 3457888889999999999872 222239999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC
Q psy84 281 LKKRPCH 287 (2182)
Q Consensus 281 lkkrP~~ 287 (2182)
| .|.+
T Consensus 834 I--ip~e 838 (984)
T KOG3209|consen 834 I--IPPE 838 (984)
T ss_pred E--cChh
Confidence 9 5543
No 86
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=99.11 E-value=9.4e-11 Score=108.87 Aligned_cols=66 Identities=39% Similarity=0.862 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCC-hhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQ-PDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 6 V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~-~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
+..|++++|+.||.++ ++.+|.+.|.+++|+|..|+.++ .++|++|||...|||.+|+.+|+.|+.
T Consensus 1 ~~~w~~~~v~~wL~~~--g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 1 VSQWSPESVADWLESI--GLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred CCCCCHHHHHHHHHHC--ChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence 4689999999999999 48999999999999999999999 999999999999999999999999984
No 87
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.11 E-value=7.2e-11 Score=108.58 Aligned_cols=63 Identities=38% Similarity=0.822 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 8 DWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 8 ~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
.|++++|++||++++ +.+|.+.|.+++|+|..|+.|+.+||++|||...|||.+|+.+|+.|+
T Consensus 1 ~w~~~~V~~wL~~~~--~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l~ 63 (63)
T cd00166 1 NWSPEDVAEWLESLG--LGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQKLK 63 (63)
T ss_pred CCCHHHHHHHHHHcC--hHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 599999999999985 799999999999999999999999999999999999999999999874
No 88
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.11 E-value=4.3e-11 Score=112.34 Aligned_cols=65 Identities=37% Similarity=0.880 Sum_probs=61.7
Q ss_pred cCCCCchhhhhhhcccchhHHHhHHHHhhccCCc-hhhhCCChhhhhccCCcccchHHHHHHHHHHHH
Q psy84 1147 INNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213 (2182)
Q Consensus 1147 I~sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G-~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr 1213 (2182)
|..|++++|+.||.+++ +.+|.+.|.+++|+| ..|+.|+.++|++|||+..|||..|+++|+.||
T Consensus 1 v~~w~~~~v~~WL~~~g--l~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 1 VSTWSPEDVAEWLKSLG--LEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp GGGHCHHHHHHHHHHTT--CGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCC--cHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 46799999999999885 579999999999999 999999999999999999999999999999986
No 89
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.09 E-value=4.6e-10 Score=106.99 Aligned_cols=92 Identities=27% Similarity=0.504 Sum_probs=80.3
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC---CcceEEEEcCCcEEEeccccCCCcceEEEEeCC-eEEEE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYL 787 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d---kkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-rtyyF 787 (2182)
++|||.++.... .+.|++|||+|.++.|++|+.... ..+.+.|+|.++.|....+.....++|.|.+.. +.|+|
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~ 78 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLL 78 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEE
Confidence 479999988653 257999999999999999998765 689999999999888876654578999999988 99999
Q ss_pred EcCCHHHHHHHHHHHHHh
Q psy84 788 SADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 788 aAdSeeEme~WI~AL~~A 805 (2182)
+|+|++|+..|+.+|+.|
T Consensus 79 ~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 79 QAESEEEREEWIEALQSA 96 (96)
T ss_pred EeCCHHHHHHHHHHHhcC
Confidence 999999999999999864
No 90
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.08 E-value=8.5e-10 Score=114.81 Aligned_cols=92 Identities=16% Similarity=0.311 Sum_probs=57.0
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEe-CCeEEEEecCCC-------------CcceEEEEcCC--cEEEec----cccCC
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIK-GNHFYGFTDKDS-------------TKAHLFIYLPG--FTVAPA----VEVKS 771 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLk-d~~LyYYKdk~d-------------kkpkGsI~L~g--~tV~~~----~d~ks 771 (2182)
++|||+|++... .++||+|||+|. ++.|.|||.+.+ ....+.+.... +.+... .....
T Consensus 1 k~G~l~K~~~~~--~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNKF--GKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEEE--TTS---S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEEEecCCC--CcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 589999999872 479999999999 999999999322 11222222111 111110 11122
Q ss_pred CcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHh
Q psy84 772 RKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 772 Rk~aFkL~~~~rtyyFaAdSeeEme~WI~AL~~A 805 (2182)
....|.|.++.++|+|.|+|.+|+..||.||+.|
T Consensus 79 ~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 4567889888899999999999999999999876
No 91
>KOG3549|consensus
Probab=99.07 E-value=2.8e-10 Score=132.76 Aligned_cols=111 Identities=22% Similarity=0.260 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHHHhH-hhccCCCcccCCcccceeeEeecCCCCCcceEEEec--CCcceEEeccCCCChhhhcCccc
Q psy84 1310 PIENIRNSAKGLSELADE-MIREIHDPLLLQPSSLDLATLKKRPGEHLGFCIIPS--FHGIHQIGDIKCNSTAYQSGKIE 1386 (2182)
Q Consensus 1310 ~e~~i~~ic~~L~~icD~-Il~~spD~l~~q~a~le~V~L~K~~~e~LG~~I~s~--~~G~h~Is~I~~gSPAd~~g~L~ 1386 (2182)
++.--+.+.+.|..|-.. ++..+-.|+ ..--+.|+|++..-+|||+.|+++ .+-+++|++|-++-.||.+|+|.
T Consensus 24 p~~~RL~Ltke~L~iQkqdVvcvsG~p~---~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LF 100 (505)
T KOG3549|consen 24 PEPLRLNLTKELLSIQKQDVVCVSGPPM---ESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLF 100 (505)
T ss_pred ccchhhhhHHHHhhhhccceEecCCCCc---cCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceE
Confidence 555567777777776653 333333332 344567999987778999999998 46678999999999999999999
Q ss_pred CCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEE
Q psy84 1387 CGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLK 1423 (2182)
Q Consensus 1387 ~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LK 1423 (2182)
+||.|+||||..|..++|++||.+||+++++|+||||
T Consensus 101 vGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~ 137 (505)
T KOG3549|consen 101 VGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVK 137 (505)
T ss_pred eeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeH
Confidence 9999999999999999999999999999999999997
No 92
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.06 E-value=1.1e-09 Score=114.97 Aligned_cols=95 Identities=19% Similarity=0.420 Sum_probs=67.3
Q ss_pred eeEEEEeec-----CCCC--CCCCceeEEEEEeCCeEEEEecCC--------------CCcceEEEEcCCcEEEeccccC
Q psy84 712 CEGWLFQRD-----RKIS--TVPQWIRGWFIIKGNHFYGFTDKD--------------STKAHLFIYLPGFTVAPAVEVK 770 (2182)
Q Consensus 712 keGWL~Kkg-----~~~~--~~k~WKKRWFVLkd~~LyYYKdk~--------------dkkpkGsI~L~g~tV~~~~d~k 770 (2182)
++|||+++. ++.. ..+.|+..|+||+++.|++||+.. ...+.+.|.|.++.+..+.+..
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~ 81 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT 81 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence 689998753 1111 358999999999999999999931 1234456999999888887777
Q ss_pred CCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHhh
Q psy84 771 SRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 771 sRk~aFkL~~~~-rtyyFaAdSeeEme~WI~AL~~As 806 (2182)
.|+|+|+|...+ ..|.|+|.|++||..||.+|+.++
T Consensus 82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 799999999886 999999999999999999999875
No 93
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.06 E-value=1.4e-09 Score=104.58 Aligned_cols=94 Identities=22% Similarity=0.386 Sum_probs=79.0
Q ss_pred eEEEEEeecCCCC-CCCCceEEEEEEeCCeEEEEecCCCCccc-eeEecCCcEEEecccccCcceeEEEEcC---CeEEE
Q psy84 1858 CEGWLFQRDRKIS-TVPQWIRGWFIIKGNHFYGFTDKDSTKAH-LFIYLPGFTVAPAVEVKSRKYALKIYHT---GTTFY 1932 (2182)
Q Consensus 1858 keGWL~KKg~k~s-~~K~WKKRWFVLkd~~LyYYKde~d~kp~-GsI~L~g~tVs~a~e~ksRk~aFkI~~~---~rtyy 1932 (2182)
++|||.+++.... ....|++|||+|.++.|+||+.+...... +.++|.+..|....+....+++|.|... .+.|+
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~ 80 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFV 80 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEE
Confidence 4799999886311 24789999999999999999999777766 7999999777776544357899999988 69999
Q ss_pred EEcCCHHHHHHHHHHHHHH
Q psy84 1933 LSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1933 FsAdSeeEm~~WI~AL~~A 1951 (2182)
|+|+|+++++.|+.+|+.|
T Consensus 81 ~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 81 FQADSEEEAQEWVEALQQA 99 (99)
T ss_pred EEcCCHHHHHHHHHHHhcC
Confidence 9999999999999999864
No 94
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.02 E-value=2.6e-09 Score=102.68 Aligned_cols=94 Identities=22% Similarity=0.386 Sum_probs=79.1
Q ss_pred eeEEEEeecCCCC-CCCCceeEEEEEeCCeEEEEecCCCCcce-EEEEcCCcEEEeccccCCCcceEEEEeC---CeEEE
Q psy84 712 CEGWLFQRDRKIS-TVPQWIRGWFIIKGNHFYGFTDKDSTKAH-LFIYLPGFTVAPAVEVKSRKYALKIYHT---GTTFY 786 (2182)
Q Consensus 712 keGWL~Kkg~~~~-~~k~WKKRWFVLkd~~LyYYKdk~dkkpk-GsI~L~g~tV~~~~d~ksRk~aFkL~~~---~rtyy 786 (2182)
++|||.+++.... ..+.|++|||+|.+..|+||+++.+.... +.++|.+..|....+...++++|.|... .+.|+
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~ 80 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFV 80 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEE
Confidence 3799999886631 12589999999999999999998877776 7899999877766544357899999998 69999
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q psy84 787 LSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 787 FaAdSeeEme~WI~AL~~A 805 (2182)
|+|+|+++++.|+.+|+.|
T Consensus 81 ~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 81 FQADSEEEAQEWVEALQQA 99 (99)
T ss_pred EEcCCHHHHHHHHHHHhcC
Confidence 9999999999999999875
No 95
>KOG4375|consensus
Probab=98.97 E-value=2.6e-10 Score=130.24 Aligned_cols=70 Identities=29% Similarity=0.528 Sum_probs=66.0
Q ss_pred CccccCCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 1 MAYVNVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 1 ma~~~V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
|.-|+|.-||..||++||..|. |.+|.+.|.+++|+|++|-+|+.+|+.+|||++||||+.|.+|+++|-
T Consensus 202 F~~Kpl~~Wsk~DV~dWLssl~--L~E~~~aF~d~eIdG~hLp~l~k~df~~LGVTRVgHRmnIerALr~ll 271 (272)
T KOG4375|consen 202 FLCKPLQRWSKIDVNDWLSSLH--LIEYDDAFHDIEIDGKHLPLLRKLDFRGLGVTRVGHRMNIERALRQLL 271 (272)
T ss_pred ccccccceeccccHHHHHHhhh--hhhcchhhhhcccccchhhhcchhhhhcccchhhhhHHHHHHHHHHhh
Confidence 3458999999999999999995 999999999999999999999999999999999999999999999874
No 96
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=98.95 E-value=5.4e-10 Score=102.79 Aligned_cols=63 Identities=40% Similarity=0.830 Sum_probs=59.7
Q ss_pred CCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHH
Q psy84 1149 NWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213 (2182)
Q Consensus 1149 sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr 1213 (2182)
.|++++|+.||++++ +.+|.+.|.+++|+|..|+.|+.++|++|||...|||.+|+.+|+.|+
T Consensus 1 ~w~~~~V~~wL~~~~--~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l~ 63 (63)
T cd00166 1 NWSPEDVAEWLESLG--LGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQKLK 63 (63)
T ss_pred CCCHHHHHHHHHHcC--hHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 599999999999886 579999999999999999999999999999999999999999999874
No 97
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=98.94 E-value=8.4e-10 Score=102.52 Aligned_cols=66 Identities=38% Similarity=0.857 Sum_probs=62.0
Q ss_pred cCCCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCC-hhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1147 INNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQ-PDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1147 I~sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~-~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
+..|++++|+.||.+++ +.+|.+.|.+++|+|..|+.++ .++|++|||..+|||.+|+.+|+.||.
T Consensus 1 ~~~w~~~~v~~wL~~~g--~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 1 VSQWSPESVADWLESIG--LEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred CCCCCHHHHHHHHHHCC--hHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence 35799999999999985 6699999999999999999999 999999999999999999999999985
No 98
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.94 E-value=7.9e-10 Score=111.52 Aligned_cols=94 Identities=19% Similarity=0.418 Sum_probs=77.8
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCe-----EEEEecCCCCcceEEEEcCCcEEEecccc----------CCCcceE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNH-----FYGFTDKDSTKAHLFIYLPGFTVAPAVEV----------KSRKYAL 776 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~-----LyYYKdk~dkkpkGsI~L~g~tV~~~~d~----------ksRk~aF 776 (2182)
++|||++.|+.. .+.||||||||.+-+ ++-|+.+. ..|...|.|+|++|..++.. .+.+|-|
T Consensus 4 ~sGyL~k~Gg~~--~KkWKKRwFvL~qvsQYtfamcsy~ekk-s~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff 80 (117)
T cd01234 4 HCGYLYAIGKNV--WKKWKKRFFVLVQVSQYTFAMCSYREKK-AEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFF 80 (117)
T ss_pred eeEEEEeccchh--hhhhheeEEEEEchhHHHHHHHhhhhhc-CCchhheeecceEEeccCCCCCCcccccccccchhhh
Confidence 799999999753 489999999999553 45566543 47888999999999877332 2567889
Q ss_pred EEEeCCeEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy84 777 KIYHTGTTFYLSADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 777 kL~~~~rtyyFaAdSeeEme~WI~AL~~As~~ 808 (2182)
..+..+.+..|+++++.|+.-||.||-+|+-.
T Consensus 81 ~avkegd~~~fa~~de~~r~lwvqa~yratgq 112 (117)
T cd01234 81 NAVKEGDELKFATDDENERHLWVQAMYRATGQ 112 (117)
T ss_pred heeccCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence 99998999999999999999999999998763
No 99
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.92 E-value=1.4e-09 Score=109.74 Aligned_cols=93 Identities=19% Similarity=0.421 Sum_probs=77.6
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCe-----EEEEecCCCCccceeEecCCcEEEeccc----------ccCcceeE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNH-----FYGFTDKDSTKAHLFIYLPGFTVAPAVE----------VKSRKYAL 1922 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~-----LyYYKde~d~kp~GsI~L~g~tVs~a~e----------~ksRk~aF 1922 (2182)
++|||+|.|+ ...|.||||||||.+-+ ++-|+.+ ...|.-.|.|.||+|+-++. ..+.+|-|
T Consensus 4 ~sGyL~k~Gg--~~~KkWKKRwFvL~qvsQYtfamcsy~ek-ks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff 80 (117)
T cd01234 4 HCGYLYAIGK--NVWKKWKKRFFVLVQVSQYTFAMCSYREK-KAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFF 80 (117)
T ss_pred eeEEEEeccc--hhhhhhheeEEEEEchhHHHHHHHhhhhh-cCCchhheeecceEEeccCCCCCCcccccccccchhhh
Confidence 8999999997 46799999999999654 5555544 45778899999999987632 23568889
Q ss_pred EEEcCCeEEEEEcCCHHHHHHHHHHHHHHhh
Q psy84 1923 KIYHTGTTFYLSADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1923 kI~~~~rtyyFsAdSeeEm~~WI~AL~~As~ 1953 (2182)
+..-.+.+..|+++++.|+..||+||=+|+-
T Consensus 81 ~avkegd~~~fa~~de~~r~lwvqa~yratg 111 (117)
T cd01234 81 NAVKEGDELKFATDDENERHLWVQAMYRATG 111 (117)
T ss_pred heeccCcEEEEeccchHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999873
No 100
>KOG3550|consensus
Probab=98.91 E-value=2.6e-09 Score=113.31 Aligned_cols=87 Identities=21% Similarity=0.304 Sum_probs=79.1
Q ss_pred cccceeeEeecCCCCCcceEEEec--CCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCc
Q psy84 1340 PSSLDLATLKKRPGEHLGFCIIPS--FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSD 1417 (2182)
Q Consensus 1340 ~a~le~V~L~K~~~e~LG~~I~s~--~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~ 1417 (2182)
-+..+.|.|-| .+++|||+|-++ -+..++|+||++|+.||+-|.|.-||+++.|||.+|.|-.|+..|.+|+.+-+.
T Consensus 88 hahprvvelpk-tdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs 166 (207)
T KOG3550|consen 88 HAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS 166 (207)
T ss_pred CCCCceeecCc-cccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc
Confidence 35667788875 678999999988 477899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCC
Q psy84 1418 IFLTLKKRPC 1427 (2182)
Q Consensus 1418 vtL~LKkrP~ 1427 (2182)
|.|+++--|+
T Consensus 167 vklvvrytpk 176 (207)
T KOG3550|consen 167 VKLVVRYTPK 176 (207)
T ss_pred EEEEEecChH
Confidence 9999997773
No 101
>KOG1170|consensus
Probab=98.90 E-value=9.2e-10 Score=138.39 Aligned_cols=73 Identities=34% Similarity=0.742 Sum_probs=68.0
Q ss_pred CccccCCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHhhh
Q psy84 1 MAYVNVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFH 75 (2182)
Q Consensus 1 ma~~~V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~l~ 75 (2182)
++..++..|+.++|+.||+.+ +|-+|.+.|.+|+|.|.+||.|.+.||++|||+++||-++||+||..|++-+
T Consensus 990 ~~~a~~~~w~seeV~awLe~~--~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkdl~~~~ 1062 (1099)
T KOG1170|consen 990 FAFANIPYWTSEEVCAWLESI--GLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKDLRAQN 1062 (1099)
T ss_pred cccccCccccHHHHHHHHhcc--ccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHHHHhcc
Confidence 356789999999999999988 5899999999999999999999999999999999999999999999998443
No 102
>KOG3938|consensus
Probab=98.85 E-value=1.9e-09 Score=123.07 Aligned_cols=83 Identities=25% Similarity=0.234 Sum_probs=74.9
Q ss_pred cceEEEeeeCCCCCcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEE
Q psy84 201 SLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 280 (2182)
Q Consensus 201 ~l~~V~L~K~~~e~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~ 280 (2182)
.-+.|.++|.. +.||++|..++.|..||.+|++||..|+-..+.|||.|..|||++|+||+|.+|+++||+.+.+-+++
T Consensus 126 q~kEv~v~Kse-dalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ft 204 (334)
T KOG3938|consen 126 QAKEVEVVKSE-DALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFT 204 (334)
T ss_pred cceeEEEEecc-cccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeE
Confidence 33567777744 49999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred EEec
Q psy84 281 LKKR 284 (2182)
Q Consensus 281 lkkr 284 (2182)
||-.
T Consensus 205 lrLi 208 (334)
T KOG3938|consen 205 LRLI 208 (334)
T ss_pred EEee
Confidence 8543
No 103
>KOG3368|consensus
Probab=98.81 E-value=3.4e-08 Score=103.47 Aligned_cols=123 Identities=23% Similarity=0.326 Sum_probs=99.5
Q ss_pred cceEEEEEEcCCCCceEEeccCCC-cc-CCCchhHHHHHHHHHHHHHHHhhhcccCCCCceeecccCCeEEEEEEcCCCc
Q psy84 1030 ANRYYFVMVGREDNPLYQRGFSCK-EA-NDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGV 1107 (2182)
Q Consensus 1030 m~i~~laIIGk~d~PLY~~~f~s~-~~-~~~~~~l~~qfi~HsSLDiIeEk~~~t~~~yLg~Ld~~e~~~VygYvT~Tgi 1107 (2182)
|+||.|+|-+++|+-||-++.... .. ...++++.+-|.+-.||--+-+++.+...--.-.-+.+..|+++-|+|+||+
T Consensus 1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptgl 80 (140)
T KOG3368|consen 1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGL 80 (140)
T ss_pred CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCc
Confidence 568999999999999999888632 22 2344557788888889999999998863222245567889999999999999
Q ss_pred EEEEEecCCChHHHHHHHHHHHH-HHHHhhc-CCCcc--ccCCcCCCCch
Q psy84 1108 KFLMVHDSKNEEGIKKFFTSVYE-LFIKYSL-NPFYK--INTPINNWKPD 1153 (2182)
Q Consensus 1108 KFILi~d~~~e~~Ir~fF~~Vhe-lYvd~vm-NPFy~--~~~PI~sWs~d 1153 (2182)
||||++|.+.. .+|.+++.||. +|+.++- ||.+. +..||.+-.|.
T Consensus 81 k~vl~Tdpk~~-~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr 129 (140)
T KOG3368|consen 81 KFVLNTDPKAG-SIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFR 129 (140)
T ss_pred EEEEecCCCcc-cHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHH
Confidence 99999998554 59999999999 9999877 99987 88888876663
No 104
>KOG3551|consensus
Probab=98.79 E-value=1e-08 Score=121.60 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=83.9
Q ss_pred eEEEeeeCCCCCcceEEEec--CCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEE
Q psy84 203 DLATLKKRPGEHLGFCIIPS--FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 280 (2182)
Q Consensus 203 ~~V~L~K~~~e~LG~~I~~~--~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~ 280 (2182)
+.|.++|...++||++|+++ ++..++|++|-+|-+||+++.|++||.|+.|||..+..-+|+|.|+.||+++..|.|.
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~le 165 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLE 165 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeee
Confidence 67888998888999999988 6778899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCcccc
Q psy84 281 LKKRPCHSKILG 292 (2182)
Q Consensus 281 lkkrP~~t~~~~ 292 (2182)
||.+...++.|.
T Consensus 166 vKy~REvtPy~k 177 (506)
T KOG3551|consen 166 VKYMREVTPYFK 177 (506)
T ss_pred eeeehhcchhhc
Confidence 999998884443
No 105
>KOG1170|consensus
Probab=98.67 E-value=1.1e-08 Score=129.03 Aligned_cols=71 Identities=35% Similarity=0.696 Sum_probs=66.5
Q ss_pred cCCcCCCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHhhh
Q psy84 1144 NTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFH 1216 (2182)
Q Consensus 1144 ~~PI~sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~~~ 1216 (2182)
..+|..|+.++|+.||+.+..+ +|.+.|.+|+|.|.+||+|-+.||++|||++|||-++||+||+.|+.-+
T Consensus 992 ~a~~~~w~seeV~awLe~~~Ls--Ey~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkdl~~~~ 1062 (1099)
T KOG1170|consen 992 FANIPYWTSEEVCAWLESIGLS--EYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKDLRAQN 1062 (1099)
T ss_pred cccCccccHHHHHHHHhccccc--hhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHHHHhcc
Confidence 5699999999999999988644 9999999999999999999999999999999999999999999998643
No 106
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.67 E-value=1.1e-07 Score=91.66 Aligned_cols=78 Identities=27% Similarity=0.447 Sum_probs=68.2
Q ss_pred eEEEeeeCCCCCcceEEEecCC--cceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEE
Q psy84 203 DLATLKKRPGEHLGFCIIPSFH--GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 280 (2182)
Q Consensus 203 ~~V~L~K~~~e~LG~~I~~~~~--g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~ 280 (2182)
+.|.|.+....+|||.+..... +..+|+.|.++|||+. ..|++||+|++|||+.+.+|++.+++++|+.....++|+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 4577877667799999996643 4579999999999998 579999999999999999999999999999988888877
Q ss_pred E
Q psy84 281 L 281 (2182)
Q Consensus 281 l 281 (2182)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 6
No 107
>KOG4375|consensus
Probab=98.64 E-value=1.5e-08 Score=116.16 Aligned_cols=71 Identities=34% Similarity=0.669 Sum_probs=67.1
Q ss_pred CCCccccCCcCCCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHH
Q psy84 1138 NPFYKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHL 1212 (2182)
Q Consensus 1138 NPFy~~~~PI~sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~L 1212 (2182)
|||. ..|+.-|+-.+|.+||..|. |-+|.+.|.+++|+|+.|-+|+.+|+.+|||++||||..|-+|+.+|
T Consensus 200 ~pF~--~Kpl~~Wsk~DV~dWLssl~--L~E~~~aF~d~eIdG~hLp~l~k~df~~LGVTRVgHRmnIerALr~l 270 (272)
T KOG4375|consen 200 NPFL--CKPLQRWSKIDVNDWLSSLH--LIEYDDAFHDIEIDGKHLPLLRKLDFRGLGVTRVGHRMNIERALRQL 270 (272)
T ss_pred Cccc--ccccceeccccHHHHHHhhh--hhhcchhhhhcccccchhhhcchhhhhcccchhhhhHHHHHHHHHHh
Confidence 7884 78999999999999999997 55999999999999999999999999999999999999999999887
No 108
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.64 E-value=1.5e-07 Score=90.83 Aligned_cols=79 Identities=27% Similarity=0.453 Sum_probs=67.4
Q ss_pred eeeEeecCCCCCcceEEEecCC--cceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEE
Q psy84 1344 DLATLKKRPGEHLGFCIIPSFH--GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 1421 (2182)
Q Consensus 1344 e~V~L~K~~~e~LG~~I~s~~~--G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~ 1421 (2182)
+.|.|.+....+|||.+..... +..+|+.|.++|||+. ..|++||+|++|||+.+.+|++.++++.|+.....++|+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 4577877667799999987743 4579999999999988 569999999999999999999999999999987777776
Q ss_pred EE
Q psy84 1422 LK 1423 (2182)
Q Consensus 1422 LK 1423 (2182)
++
T Consensus 81 v~ 82 (82)
T cd00992 81 VR 82 (82)
T ss_pred EC
Confidence 63
No 109
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.62 E-value=8.3e-08 Score=99.07 Aligned_cols=96 Identities=19% Similarity=0.422 Sum_probs=72.7
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccc---eeEecCCcEEEecccc-----cCcceeEEEEcCC
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH---LFIYLPGFTVAPAVEV-----KSRKYALKIYHTG 1928 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~---GsI~L~g~tVs~a~e~-----ksRk~aFkI~~~~ 1928 (2182)
+.+|||+-+.. +.|.||||||+|+...|||+.......++ ....+.+..|-..-.. ....|+|.|.++.
T Consensus 1 e~~g~LylK~~---gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYLKAD---GKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEEccC---CCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 35999999876 45899999999999999999877555443 3556666545443111 1237899998764
Q ss_pred -------eEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy84 1929 -------TTFYLSADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1929 -------rtyyFsAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
-..+||||+++.+..||.||+-|..+.
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~KyG~ 111 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAKYGK 111 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHhhhh
Confidence 256899999999999999999988764
No 110
>KOG1090|consensus
Probab=98.61 E-value=2e-08 Score=127.85 Aligned_cols=92 Identities=21% Similarity=0.422 Sum_probs=78.0
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeC--CeEEEEecCCCCccceeEecCCcE-EEe-cccccCcceeEEEEcCCeEEEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKG--NHFYGFTDKDSTKAHLFIYLPGFT-VAP-AVEVKSRKYALKIYHTGTTFYL 1933 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd--~~LyYYKde~d~kp~GsI~L~g~t-Vs~-a~e~ksRk~aFkI~~~~rtyyF 1933 (2182)
.+|||+|+|. .+|.||.|||||.. ..|+||.+..+++|+|.|+|..+. |.. ......++--|.+.+.+|+|-|
T Consensus 1636 ~eG~LyKrGA---~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rvynf 1712 (1732)
T KOG1090|consen 1636 PEGYLYKRGA---KLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNF 1712 (1732)
T ss_pred cccchhhcch---hhcccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccccCccceeeeehhhHHHHH
Confidence 6999999987 57999999999984 579999999999999999999832 222 1233346667999999999999
Q ss_pred EcCCHHHHHHHHHHHHHHh
Q psy84 1934 SADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1934 sAdSeeEm~~WI~AL~~As 1952 (2182)
+|.+....++|++.|+.+.
T Consensus 1713 ~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1713 CAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred HhccchHHHHHHHHHHHhh
Confidence 9999999999999998864
No 111
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.60 E-value=1.3e-07 Score=89.08 Aligned_cols=68 Identities=24% Similarity=0.336 Sum_probs=59.9
Q ss_pred CcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcC-CcEEEEEE
Q psy84 1355 HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESS-SDIFLTLK 1423 (2182)
Q Consensus 1355 ~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~-~~vtL~LK 1423 (2182)
+|||.+....++..+|+.|.++|||+. +.|++||+|++|||+.|.+|++.++.++|++.+ ..++|+++
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 70 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTVR 70 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEEC
Confidence 689999988664679999999999987 459999999999999999999999999999986 66777663
No 112
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.60 E-value=2.8e-07 Score=88.93 Aligned_cols=79 Identities=24% Similarity=0.390 Sum_probs=69.1
Q ss_pred eEEEeeeCCCCCcceEEEecCC--cceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEE
Q psy84 203 DLATLKKRPGEHLGFCIIPSFH--GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 280 (2182)
Q Consensus 203 ~~V~L~K~~~e~LG~~I~~~~~--g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~ 280 (2182)
..|++.+.. ..|||.+..... ..++|++|.++|||++.| |++||+|+.|||+.|.+|++.+++.+++..+..++|+
T Consensus 3 ~~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~ 80 (85)
T smart00228 3 RLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT 80 (85)
T ss_pred EEEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 356777755 799999997643 457999999999999998 9999999999999999999999999999988788888
Q ss_pred EEe
Q psy84 281 LKK 283 (2182)
Q Consensus 281 lkk 283 (2182)
+.+
T Consensus 81 i~r 83 (85)
T smart00228 81 VLR 83 (85)
T ss_pred EEe
Confidence 854
No 113
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.60 E-value=1.4e-07 Score=88.82 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=60.3
Q ss_pred CcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCC-CcEEEEE
Q psy84 214 HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESS-SDIFLTL 281 (2182)
Q Consensus 214 ~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~-~~VtL~l 281 (2182)
+|||.+....++.++|+.|.++|||+. ..|++||+|++|||+.|.+|++.++.++|++.. ..|+|++
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 689999977664679999999999997 469999999999999999999999999999987 6788876
No 114
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.57 E-value=3.7e-07 Score=88.06 Aligned_cols=78 Identities=24% Similarity=0.396 Sum_probs=68.3
Q ss_pred eeEeecCCCCCcceEEEecCC--cceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEE
Q psy84 1345 LATLKKRPGEHLGFCIIPSFH--GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTL 1422 (2182)
Q Consensus 1345 ~V~L~K~~~e~LG~~I~s~~~--G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~L 1422 (2182)
.|++.+.. ..|||.+..... ..++|.+|.++|||++.| |++||+|+.|||+.|.+|++.+++.+++..+..++|++
T Consensus 4 ~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i 81 (85)
T smart00228 4 LVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV 81 (85)
T ss_pred EEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 46677655 789999987753 457999999999999998 99999999999999999999999999999877888888
Q ss_pred Ee
Q psy84 1423 KK 1424 (2182)
Q Consensus 1423 Kk 1424 (2182)
++
T Consensus 82 ~r 83 (85)
T smart00228 82 LR 83 (85)
T ss_pred Ee
Confidence 64
No 115
>KOG3606|consensus
Probab=98.48 E-value=1.9e-07 Score=107.16 Aligned_cols=84 Identities=27% Similarity=0.383 Sum_probs=75.4
Q ss_pred cccceeeEeecCCCC-CcceEEEecC------Cc-----ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHH
Q psy84 1340 PSSLDLATLKKRPGE-HLGFCIIPSF------HG-----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQV 1407 (2182)
Q Consensus 1340 ~a~le~V~L~K~~~e-~LG~~I~s~~------~G-----~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~V 1407 (2182)
|+.=+.|.|+|...+ +|||+|..+. .| .+||+|..+|+.|+..|+|-+.|||++|||+.|.|++.++|
T Consensus 156 PEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 156 PETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred chhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence 556678999987754 9999999773 23 46999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEE
Q psy84 1408 MALFEESSSDIFLTLK 1423 (2182)
Q Consensus 1408 v~~Lre~~~~vtL~LK 1423 (2182)
-.|.-+....+.+|||
T Consensus 236 TDMMvANshNLIiTVk 251 (358)
T KOG3606|consen 236 TDMMVANSHNLIITVK 251 (358)
T ss_pred HHHHhhcccceEEEec
Confidence 9999999999999998
No 116
>KOG3531|consensus
Probab=98.46 E-value=3.3e-08 Score=125.66 Aligned_cols=132 Identities=15% Similarity=0.382 Sum_probs=111.3
Q ss_pred cccCCCCCCCCCCCCccccccccccccccCCCCCcCCCCCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCC
Q psy84 671 RAIIPLKPKHKATSPKVFRKKTNLLRGKRRNISVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST 750 (2182)
Q Consensus 671 ~a~~~~~~~kk~t~~~Sf~KKk~s~~skrRnvsv~~lg~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk 750 (2182)
+......+++.++.+|.++.+..+.......+.+..+ +.|||.++-.+.. +|+|-|.|++..|||+||+.+|.
T Consensus 889 t~~~rt~p~R~nt~vhvcw~r~~sv~~~d~s~a~e~q----Lsg~Llrkfknss---gwqkLwvvft~fcl~fyKS~qD~ 961 (1036)
T KOG3531|consen 889 TSLERTDPHRQNTPVHVCWHRNTSVSTADHSIAVENQ----LSGYLLRKFKNSS---GWQKLWVVFTNFCLFFYKSHQDS 961 (1036)
T ss_pred HhhcccCcccCCcceEEeecCCCccccCCcchHHHhh----hhHHHHHHhhccc---cceeeeeeecceeeEeecccccc
Confidence 3445577889999999999888765554555555554 7999998876654 89999999999999999999999
Q ss_pred cceEEEEcCCcEEEec--cccCCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy84 751 KAHLFIYLPGFTVAPA--VEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 751 kpkGsI~L~g~tV~~~--~d~ksRk~aFkL~~~~rtyyFaAdSeeEme~WI~AL~~As~~~ 809 (2182)
.+..+++|-|++|.+- .+...|.|+|+|...+.+|||+|++.-..++||+.|+.|....
T Consensus 962 ~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a~~s~ 1022 (1036)
T KOG3531|consen 962 EPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDAPSSA 1022 (1036)
T ss_pred cccccccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcCCccC
Confidence 9999999999998765 4455689999999999999999999999999999998887744
No 117
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=3.9e-07 Score=94.21 Aligned_cols=94 Identities=19% Similarity=0.418 Sum_probs=72.2
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceE---EEEcCCcEEEeccccC-----CCcceEEEEeCC-
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHL---FIYLPGFTVAPAVEVK-----SRKYALKIYHTG- 782 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkG---sI~L~g~tV~~~~d~k-----sRk~aFkL~~~~- 782 (2182)
++|||+.+..+. ++|||+||+|+..-|||+-....++++. ...+.+..|-.....+ .-.|+|.|.++.
T Consensus 2 ~~g~LylK~~gk---KsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADGK---KSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCCC---ccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 589999997553 5999999999999999997765555553 4666776555543221 136899998764
Q ss_pred ------eEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy84 783 ------TTFYLSADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 783 ------rtyyFaAdSeeEme~WI~AL~~As~~ 808 (2182)
...+||||+++.+..||.||+-|...
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~KyG 110 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAKYG 110 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHhhh
Confidence 25689999999999999999998763
No 118
>KOG0690|consensus
Probab=98.44 E-value=2.5e-07 Score=108.94 Aligned_cols=98 Identities=18% Similarity=0.315 Sum_probs=75.7
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEe-CCeEEEEecCCCCccceeEecCCcEEEec---ccccCcceeEEEEcCC-e-
Q psy84 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIK-GNHFYGFTDKDSTKAHLFIYLPGFTVAPA---VEVKSRKYALKIYHTG-T- 1929 (2182)
Q Consensus 1856 ~dkeGWL~KKg~k~s~~K~WKKRWFVLk-d~~LyYYKde~d~kp~GsI~L~g~tVs~a---~e~ksRk~aFkI~~~~-r- 1929 (2182)
+.++|||+|+|. ..|+|+.|||+|. ++.|.-|+.+......-.-+|.+|.|.-| ...+.|++.|.|.+-+ .
T Consensus 15 vvkEgWlhKrGE---~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTT 91 (516)
T KOG0690|consen 15 VVKEGWLHKRGE---HIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTT 91 (516)
T ss_pred hHHhhhHhhcch---hhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCCceEEEEeeeeee
Confidence 448999999997 5799999999997 67899999884443334467788877765 2234579999998876 2
Q ss_pred --EEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy84 1930 --TFYLSADSQDEFSSWLGCLSQATIAHD 1956 (2182)
Q Consensus 1930 --tyyFsAdSeeEm~~WI~AL~~As~~~~ 1956 (2182)
.-.|.+++++++++|+.||+..+....
T Consensus 92 VIERTF~ves~~eRq~W~~AIq~vsn~l~ 120 (516)
T KOG0690|consen 92 VIERTFYVESAEERQEWIEAIQAVSNRLK 120 (516)
T ss_pred eeeeeeecCCHHHHHHHHHHHHHHhhhhh
Confidence 224789999999999999999885543
No 119
>KOG3606|consensus
Probab=98.42 E-value=3e-07 Score=105.61 Aligned_cols=85 Identities=25% Similarity=0.338 Sum_probs=74.7
Q ss_pred cccceEEEeeeCC-CCCcceEEEecCC------c-----ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHH
Q psy84 199 PSSLDLATLKKRP-GEHLGFCIIPSFH------G-----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQV 266 (2182)
Q Consensus 199 ~a~l~~V~L~K~~-~e~LG~~I~~~~~------g-----~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eV 266 (2182)
|++-+.|.|.|.. +.+|||+|+.+.. | .+||+|..+|+-|...|+|-+.|||+||||+.|.|++.++|
T Consensus 156 PEtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 156 PETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred chhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence 6677789999865 4599999996532 2 45999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEEe
Q psy84 267 MALFEESSSDIFLTLKK 283 (2182)
Q Consensus 267 v~lLr~s~~~VtL~lkk 283 (2182)
-++.-+....+.++||.
T Consensus 236 TDMMvANshNLIiTVkP 252 (358)
T KOG3606|consen 236 TDMMVANSHNLIITVKP 252 (358)
T ss_pred HHHHhhcccceEEEecc
Confidence 99999999999999953
No 120
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.38 E-value=2.5e-06 Score=88.37 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=77.4
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecC---CCCccceeEecCCcEEEecccccCcceeEEEEcCCeEEEEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK---DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLS 1934 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde---~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyFs 1934 (2182)
++|-|.|... +.-+.|||.|=++.|.|=+-. ..-...+.|+|.++.|....+...-+++|+|.++.++|.++
T Consensus 6 ~eG~L~K~~r-----k~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~ 80 (104)
T cd01218 6 GEGVLTKMCR-----KKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVY 80 (104)
T ss_pred ecCcEEEeec-----CCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEecCCeEEEEE
Confidence 7999999886 468889999999999885432 22356789999998887765544468999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhc
Q psy84 1935 ADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1935 AdSeeEm~~WI~AL~~As~~~ 1955 (2182)
|+|++|..+||++|+.|+...
T Consensus 81 A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 81 AATETEKREWMLHINKCVTDL 101 (104)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998653
No 121
>KOG0690|consensus
Probab=98.35 E-value=6.7e-07 Score=105.50 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=75.3
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEe-CCeEEEEecCCCCcceEEEEcCCcEEEecc---ccCCCcceEEEEeCC-e-
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIK-GNHFYGFTDKDSTKAHLFIYLPGFTVAPAV---EVKSRKYALKIYHTG-T- 783 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLk-d~~LyYYKdk~dkkpkGsI~L~g~tV~~~~---d~ksRk~aFkL~~~~-r- 783 (2182)
++++|||+|+|... +.|+.|||+|. ++.|.-|+.+.........+|.++.|..+. -.+.|++.|-|.+-. .
T Consensus 15 vvkEgWlhKrGE~I---knWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTT 91 (516)
T KOG0690|consen 15 VVKEGWLHKRGEHI---KNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTT 91 (516)
T ss_pred hHHhhhHhhcchhh---hcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCCceEEEEeeeeee
Confidence 46899999999774 69999999997 789999998644333334678887777662 234589999998876 3
Q ss_pred --EEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy84 784 --TFYLSADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 784 --tyyFaAdSeeEme~WI~AL~~As~~~ 809 (2182)
.-.|.++|.+++++|+.||+..+...
T Consensus 92 VIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 92 VIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred eeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 23488999999999999999887643
No 122
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.33 E-value=2.1e-06 Score=88.52 Aligned_cols=90 Identities=10% Similarity=0.249 Sum_probs=67.2
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCC-eEE----EE-ec----CCCCcceEEEEcCCcEEEeccccCCCcceEEEEeC
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGN-HFY----GF-TD----KDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHT 781 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~-~Ly----YY-Kd----k~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~ 781 (2182)
++|||+.+.+... ...|.+.||..... .++ +. +. ...-.....|.|..|++...++.. |+|||+|..+
T Consensus 1 k~GYLy~~~k~~~-~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~d-RRFCFei~~~ 78 (104)
T cd01249 1 KEGYLYMQEKSKF-GGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESID-KRFCFDVEVE 78 (104)
T ss_pred CCceEEEEcCCCC-CCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCcc-ceeeEeeeec
Confidence 4899999996643 45899999998753 222 22 22 111222335889999988876654 9999999888
Q ss_pred Ce--EEEEEcCCHHHHHHHHHHHH
Q psy84 782 GT--TFYLSADSQDEFSSWLGCLS 803 (2182)
Q Consensus 782 ~r--tyyFaAdSeeEme~WI~AL~ 803 (2182)
.+ ++.|.|+|+.++..||.||.
T Consensus 79 ~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 79 EKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CCCCeEEEEecCHHHHHHHHHhhc
Confidence 74 99999999999999999984
No 123
>KOG3551|consensus
Probab=98.32 E-value=7.1e-07 Score=106.55 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=78.7
Q ss_pred eeeEeecCCCCCcceEEEec--CCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEE
Q psy84 1344 DLATLKKRPGEHLGFCIIPS--FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 1421 (2182)
Q Consensus 1344 e~V~L~K~~~e~LG~~I~s~--~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~ 1421 (2182)
+.|.++|...++||+.|+++ .+-.++|+.|.+|-.||+.+.|.+||.|+.|||....--+|++.|+.||.++.+|.|-
T Consensus 86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~le 165 (506)
T KOG3551|consen 86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLE 165 (506)
T ss_pred ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeee
Confidence 68888888888999999998 5678899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC
Q psy84 1422 LKKRPCH 1428 (2182)
Q Consensus 1422 LKkrP~~ 1428 (2182)
||-+-..
T Consensus 166 vKy~REv 172 (506)
T KOG3551|consen 166 VKYMREV 172 (506)
T ss_pred eeeehhc
Confidence 9955443
No 124
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.31 E-value=5.3e-06 Score=85.92 Aligned_cols=95 Identities=21% Similarity=0.450 Sum_probs=74.3
Q ss_pred eEEEEEeecCCC-CCCCCceEEEEEEeCCeEEEEecCCC---CccceeEecCC-cEEEec-------ccccCcceeEEEE
Q psy84 1858 CEGWLFQRDRKI-STVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPG-FTVAPA-------VEVKSRKYALKIY 1925 (2182)
Q Consensus 1858 keGWL~KKg~k~-s~~K~WKKRWFVLkd~~LyYYKde~d---~kp~GsI~L~g-~tVs~a-------~e~ksRk~aFkI~ 1925 (2182)
.+|||.-...++ ...++|+|+|.||.+..|++|..+.+ ..|...|+|.. |+|..+ .+.+.-++-|+|.
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~ 81 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQIL 81 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEE
Confidence 589997655411 11368999999999999999998754 35777888877 776554 2333458899998
Q ss_pred cCC--eEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1926 HTG--TTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1926 ~~~--rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
..+ ++.||-|+++.|.++|+.+|.+-+
T Consensus 82 ~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 82 YANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred eCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 766 999999999999999999998754
No 125
>KOG1090|consensus
Probab=98.29 E-value=2.7e-07 Score=118.02 Aligned_cols=93 Identities=20% Similarity=0.401 Sum_probs=77.8
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEe--CCeEEEEecCCCCcceEEEEcCCcEE-Ee-ccccCCCcceEEEEeCCeEEE
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIK--GNHFYGFTDKDSTKAHLFIYLPGFTV-AP-AVEVKSRKYALKIYHTGTTFY 786 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLk--d~~LyYYKdk~dkkpkGsI~L~g~tV-~~-~~d~ksRk~aFkL~~~~rtyy 786 (2182)
..+|||+|+|.. ++.||.|||||. ...|+||.+..+.+|+|+|.|..+.- .. +.....++--|.+.+..++|-
T Consensus 1635 ~~eG~LyKrGA~---lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rvyn 1711 (1732)
T KOG1090|consen 1635 IPEGYLYKRGAK---LKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYN 1711 (1732)
T ss_pred Ccccchhhcchh---hcccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccccCccceeeeehhhHHHH
Confidence 359999999966 689999999997 67999999999999999999987432 22 123333566799999999999
Q ss_pred EEcCCHHHHHHHHHHHHHhh
Q psy84 787 LSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 787 FaAdSeeEme~WI~AL~~As 806 (2182)
|+|.+..+.++|++.|+...
T Consensus 1712 f~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1712 FCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred HHhccchHHHHHHHHHHHhh
Confidence 99999999999999998764
No 126
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.25 E-value=8.3e-06 Score=84.57 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=76.4
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecC---CCCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEE
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK---DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYL 787 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk---~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyF 787 (2182)
.++|-|.|...+ ..+.|||.|=+..|.|=+-. ..-...+.|+|.++.|....+...-+++|.|.++.++|.+
T Consensus 5 i~eG~L~K~~rk-----~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v 79 (104)
T cd01218 5 VGEGVLTKMCRK-----KPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAV 79 (104)
T ss_pred EecCcEEEeecC-----CCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEecCCeEEEE
Confidence 368999999854 57889999999998885431 2234567899999988777554446899999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhhhh
Q psy84 788 SADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 788 aAdSeeEme~WI~AL~~As~~ 808 (2182)
+|+|++|..+||++|+.|+..
T Consensus 80 ~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 80 YAATETEKREWMLHINKCVTD 100 (104)
T ss_pred EcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 127
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.25 E-value=9.5e-06 Score=85.20 Aligned_cols=94 Identities=16% Similarity=0.302 Sum_probs=72.1
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCC------ccceeEecCC--cEEEec-------ccccCccee
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST------KAHLFIYLPG--FTVAPA-------VEVKSRKYA 1921 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~------kp~GsI~L~g--~tVs~a-------~e~ksRk~a 1921 (2182)
..+|||.-...+ +..++|+|+|.||.+..|++|..+.+. .+.-.|+|.+ |+|..+ .+.+.-++-
T Consensus 3 ~~EGwvkvP~~~-~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~I 81 (122)
T cd01243 3 AYEGHVKIPKPG-GVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCI 81 (122)
T ss_pred cceeeEeccCCC-CcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeE
Confidence 479999766542 245799999999999999999977542 2445688853 888764 233345889
Q ss_pred EEEEcC-------CeEEEEEcCCHHHHHHHHHHHHHH
Q psy84 1922 LKIYHT-------GTTFYLSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1922 FkI~~~-------~rtyyFsAdSeeEm~~WI~AL~~A 1951 (2182)
|+|+.. ..+.||-|+++.|.++|+.||..-
T Consensus 82 f~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 82 FRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 999763 278999999999999999999763
No 128
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.24 E-value=1.1e-05 Score=83.68 Aligned_cols=95 Identities=20% Similarity=0.443 Sum_probs=73.1
Q ss_pred eeEEEEeecCCCC-CCCCceeEEEEEeCCeEEEEecCCC---CcceEEEEcCC-cEEEec-------cccCCCcceEEEE
Q psy84 712 CEGWLFQRDRKIS-TVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPG-FTVAPA-------VEVKSRKYALKIY 779 (2182)
Q Consensus 712 keGWL~Kkg~~~~-~~k~WKKRWFVLkd~~LyYYKdk~d---kkpkGsI~L~g-~tV~~~-------~d~ksRk~aFkL~ 779 (2182)
++|||......+. ..++|+|+|.||.+..|++|..+.+ ..+...|+|+. |.|..+ .+.+.-++.|+|.
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~ 81 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQIL 81 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEE
Confidence 6899987665332 1258999999999999999997654 34677788876 554443 2234458899998
Q ss_pred eCC--eEEEEEcCCHHHHHHHHHHHHHhh
Q psy84 780 HTG--TTFYLSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 780 ~~~--rtyyFaAdSeeEme~WI~AL~~As 806 (2182)
..+ ++.+|-|+++.|.+.|+.+|.+-+
T Consensus 82 ~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 82 YANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred eCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 876 899999999999999999998754
No 129
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.23 E-value=3.6e-06 Score=86.82 Aligned_cols=90 Identities=10% Similarity=0.274 Sum_probs=66.3
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCC-eEE-----EEec----CCCCccceeEecCCcEEEecccccCcceeEEEEcC
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGN-HFY-----GFTD----KDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHT 1927 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~-~Ly-----YYKd----e~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~ 1927 (2182)
++|||+.+.++. ....|.|+||..... .++ .-++ ...-.-.-.|.|..|.+..++... |+|||.|..+
T Consensus 1 k~GYLy~~~k~~-~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~d-RRFCFei~~~ 78 (104)
T cd01249 1 KEGYLYMQEKSK-FGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESID-KRFCFDVEVE 78 (104)
T ss_pred CCceEEEEcCCC-CCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCcc-ceeeEeeeec
Confidence 589999999643 445899999998753 332 2221 111111225788889888886655 9999999888
Q ss_pred Ce--EEEEEcCCHHHHHHHHHHHH
Q psy84 1928 GT--TFYLSADSQDEFSSWLGCLS 1949 (2182)
Q Consensus 1928 ~r--tyyFsAdSeeEm~~WI~AL~ 1949 (2182)
.+ ++.|.|+++.++..||.||.
T Consensus 79 ~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 79 EKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred CCCCeEEEEecCHHHHHHHHHhhc
Confidence 74 99999999999999999985
No 130
>KOG3640|consensus
Probab=98.18 E-value=1.9e-06 Score=111.44 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=81.6
Q ss_pred ccCCCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCC---ccceeEecCCcEEEec----ccccCcceeEE
Q psy84 1851 KDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST---KAHLFIYLPGFTVAPA----VEVKSRKYALK 1923 (2182)
Q Consensus 1851 ~~Lg~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~---kp~GsI~L~g~tVs~a----~e~ksRk~aFk 1923 (2182)
++--.++..|||+--.. ++++..|.||||+|.++++.|+|...|+ .+.|.|+|..|+-..+ .+.-.+.+.|.
T Consensus 985 ~~~idVEYrGFLtmfed-~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFh 1063 (1116)
T KOG3640|consen 985 PDAIDVEYRGFLTMFED-GSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFH 1063 (1116)
T ss_pred ccccceeeeeeeeeeec-cCCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeE
Confidence 66667789999998775 3567789999999999999999988654 5888999999765443 22224888999
Q ss_pred EEcC-------------Ce-EEEEEcCCHHHHHHHHHHHHHHhhh
Q psy84 1924 IYHT-------------GT-TFYLSADSQDEFSSWLGCLSQATIA 1954 (2182)
Q Consensus 1924 I~~~-------------~r-tyyFsAdSeeEm~~WI~AL~~As~~ 1954 (2182)
|..- .+ ...|+|||.++++.|+.+|+.+...
T Consensus 1064 ie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1064 IEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 9721 13 6789999999999999999997643
No 131
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.16 E-value=2.1e-05 Score=82.66 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=71.0
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCC------cceEEEEcCC--cEEEec-------cccCCCcce
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST------KAHLFIYLPG--FTVAPA-------VEVKSRKYA 775 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk------kpkGsI~L~g--~tV~~~-------~d~ksRk~a 775 (2182)
.++|||.....++. .++|+|+|.||.+..|++|..+.+. .+.-.|+|.+ |.|..+ .+.+.-++.
T Consensus 3 ~~EGwvkvP~~~~~-krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~I 81 (122)
T cd01243 3 AYEGHVKIPKPGGV-KKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCI 81 (122)
T ss_pred cceeeEeccCCCCc-ccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeE
Confidence 47999987665432 3699999999999999999876543 3445688843 777654 123345899
Q ss_pred EEEEeC-------CeEEEEEcCCHHHHHHHHHHHHH
Q psy84 776 LKIYHT-------GTTFYLSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 776 FkL~~~-------~rtyyFaAdSeeEme~WI~AL~~ 804 (2182)
|+|... ..+.||-|+|+.|.++|+.||..
T Consensus 82 f~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~ 117 (122)
T cd01243 82 FRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSE 117 (122)
T ss_pred EEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHH
Confidence 999863 26899999999999999999975
No 132
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.15 E-value=9e-06 Score=84.76 Aligned_cols=91 Identities=15% Similarity=0.296 Sum_probs=74.8
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCC-cEEEecccc----cCcceeEEEEcCCeEEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAVEV----KSRKYALKIYHTGTTFY 1932 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g-~tVs~a~e~----ksRk~aFkI~~~~rtyy 1932 (2182)
++|||.--..+ -+.|||+|++|+..++.+|.++...+.-..|+|.. ..|+.+... +...|||+|.+...+||
T Consensus 2 kEGWmVHyT~~---d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY~ 78 (117)
T cd01239 2 KEGWMVHYTSS---DNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVYF 78 (117)
T ss_pred ccceEEEEecC---ccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEEE
Confidence 69999776542 36899999999999999999999999999999999 666654221 35799999999999999
Q ss_pred EEcC--------------------CHHHHHHHHHHHHHH
Q psy84 1933 LSAD--------------------SQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1933 FsAd--------------------SeeEm~~WI~AL~~A 1951 (2182)
...+ ..+..+.|-+||++|
T Consensus 79 VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 79 VGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred ecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 9664 345668999999876
No 133
>KOG3640|consensus
Probab=98.12 E-value=2.9e-06 Score=109.78 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=80.7
Q ss_pred cCCCCCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC---CcceEEEEcCCcEEEecc----ccCCCcceEE
Q psy84 705 KDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPGFTVAPAV----EVKSRKYALK 777 (2182)
Q Consensus 705 ~~lg~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d---kkpkGsI~L~g~tV~~~~----d~ksRk~aFk 777 (2182)
++--.++..|||+.-....+ ++.|.||||+|.++++.|+|.++| +.|.|.|+|..|+-..+. +.-.+.+.|.
T Consensus 985 ~~~idVEYrGFLtmfed~sg-fGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFh 1063 (1116)
T KOG3640|consen 985 PDAIDVEYRGFLTMFEDGSG-FGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFH 1063 (1116)
T ss_pred ccccceeeeeeeeeeeccCC-CchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeE
Confidence 45455788999998775443 678999999999999999998654 567789999998855442 3346889999
Q ss_pred EEeC------------C-e-EEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 778 IYHT------------G-T-TFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 778 L~~~------------~-r-tyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
|..- . + -..|+|||.++++.|+.+|+.+..
T Consensus 1064 ie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1064 IEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred EEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 9821 1 2 678999999999999999999865
No 134
>KOG1892|consensus
Probab=98.11 E-value=1.8e-05 Score=101.79 Aligned_cols=209 Identities=21% Similarity=0.324 Sum_probs=133.4
Q ss_pred ccchHHHHHHHHHHHHhhhcccC-chhHHHHHHHHHHHHHHHHHHHhcC----CCCCcchhhHHHHHHHHHH-Hhhhhhc
Q psy84 1198 KVGHQEIILEAVDHLRNFHYELD-HENLQLLALRVSCLAHSLHRELWNY----SSPVVSTQTLSDVATIIKA-VKPLVCW 1271 (2182)
Q Consensus 1198 ~iGHre~ILeaV~~Lr~~~y~l~-~ENLq~La~~l~~~a~sl~~~i~~~----~~~~~~~~~L~~Vv~li~a-aK~Ll~W 1271 (2182)
.--|-.+|-+|-.+|..--|..+ .-||-+-|.||+.+ .++..|++| +...+|++++..|++|.+. |..|-.-
T Consensus 767 AdCHL~ri~Qaa~lL~~~K~a~ddi~~l~stCfkLNSL--Q~~alLq~~~~~~~e~~~p~dlvd~v~r~AE~~ADeLtr~ 844 (1629)
T KOG1892|consen 767 ADCHLSRIVQAATLLTMDKYAPDDIPNLNSTCFKLNSL--QLQALLQNYHCAPDEPFIPTDLVDNVVRVAENTADELTRS 844 (1629)
T ss_pred hhccHHHHHHHHHHHhccccChhhHHhhccchhhcchH--HHHHHHhcCCCCCCCCCCchHHHHHHHHHHHhhhhHhhhc
Confidence 34577789999999987766442 35666667777643 255566677 4567899998888887743 3333221
Q ss_pred ------cCCCCCCChhhhHHHHHHHHHHHHHHHhhcccCCCCCCchHHH----HHHHHHHH--HHHhHhhccCCC-----
Q psy84 1272 ------LDRPPFSGQLAFIDKKAELLRLSLEMAFSGQRGKFADHPIENI----RNSAKGLS--ELADEMIREIHD----- 1334 (2182)
Q Consensus 1272 ------LdR~pF~~~~df~~~r~~I~~l~~eLa~~vq~D~~a~e~e~~i----~~ic~~L~--~icD~Il~~spD----- 1334 (2182)
|...|- +.|...+-+|.+..+.+..| .+.-..|. +.|.-|....+-
T Consensus 845 DGreV~LEEspe-----------------L~LpfLlP~DGyscdvvR~iP~GL~~fL~pLqqrg~Crl~~~p~spg~wT~ 907 (1629)
T KOG1892|consen 845 DGREVQLEESPE-----------------LQLPFLLPEDGYSCDVVRNIPNGLQEFLDPLQQRGFCRLIPHPRSPGTWTI 907 (1629)
T ss_pred cCceeecccCcc-----------------cccceeecCCCceeeeeccCChhHHHHHHHHHhccceeecCCCCCCceeEE
Confidence 111110 11222222333222221111 11111111 234322222211
Q ss_pred -------------------cccCCcccceeeEeecCCCCCcceEEEec-CCc----ceEEeccCCCChhhhcCcccCCCe
Q psy84 1335 -------------------PLLLQPSSLDLATLKKRPGEHLGFCIIPS-FHG----IHQIGDIKCNSTAYQSGKIECGDE 1390 (2182)
Q Consensus 1335 -------------------~l~~q~a~le~V~L~K~~~e~LG~~I~s~-~~G----~h~Is~I~~gSPAd~~g~L~~GDe 1390 (2182)
++-.++. +-.|+|.|. .|.|+.|..- +.| .++|..|.+|++||.-|.|.+||+
T Consensus 908 ymh~~~~~ss~a~~n~l~q~~~~~pe-i~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQ 984 (1629)
T KOG1892|consen 908 YMHGADYESSLARENELAQPLRKEPE-IITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQ 984 (1629)
T ss_pred EeeccccccchhhhhhccchhhcCCc-eEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCce
Confidence 1222222 567888875 5799999876 333 579999999999999999999999
Q ss_pred EEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEeCCCC
Q psy84 1391 IVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCH 1428 (2182)
Q Consensus 1391 IvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKkrP~~ 1428 (2182)
++.|||++.+|.+-+..++++-..+..|+|-|.|+-.+
T Consensus 985 LLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqgAi 1022 (1629)
T KOG1892|consen 985 LLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQGAI 1022 (1629)
T ss_pred eeeecCcccccccHHHHHHHHhccCCeEEEehhhhhhH
Confidence 99999999999999999999999999999999987643
No 135
>KOG1892|consensus
Probab=98.10 E-value=1.7e-05 Score=102.16 Aligned_cols=83 Identities=19% Similarity=0.372 Sum_probs=73.8
Q ss_pred ceEEEeeeCCCCCcceEEEec-CCc----ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCc
Q psy84 202 LDLATLKKRPGEHLGFCIIPS-FHG----IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSD 276 (2182)
Q Consensus 202 l~~V~L~K~~~e~LG~~I~~~-~~g----~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~ 276 (2182)
+-.|+|.|. .|+|++|... +.| .+||..|.+|++||..|.|.+||+++.|||++++|.+-+..++++-+.+..
T Consensus 934 i~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~v 1011 (1629)
T KOG1892|consen 934 IITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNV 1011 (1629)
T ss_pred eEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCe
Confidence 667888885 6999999855 222 569999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCC
Q psy84 277 IFLTLKKRPC 286 (2182)
Q Consensus 277 VtL~lkkrP~ 286 (2182)
|+|-|.|+-.
T Consensus 1012 V~leVaKqgA 1021 (1629)
T KOG1892|consen 1012 VHLEVAKQGA 1021 (1629)
T ss_pred EEEehhhhhh
Confidence 9999977643
No 136
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.08 E-value=9.2e-06 Score=79.39 Aligned_cols=68 Identities=26% Similarity=0.307 Sum_probs=58.4
Q ss_pred CcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEEe
Q psy84 1355 HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 1424 (2182)
Q Consensus 1355 ~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LKk 1424 (2182)
+||+.+..... ..+|..|.++|||++. .|.+||+|++|||+.|.+|++.++...|+.. +..++|++++
T Consensus 3 ~lG~~~~~~~~-~~~V~~v~~~s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r 71 (85)
T cd00988 3 GIGLELKYDDG-GLVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKR 71 (85)
T ss_pred EEEEEEEEcCC-eEEEEEecCCCCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEc
Confidence 68999987654 4689999999999887 4999999999999999999999999999764 5667888864
No 137
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.07 E-value=2e-05 Score=81.75 Aligned_cols=87 Identities=13% Similarity=0.146 Sum_probs=64.9
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCC-eEEEEecCCCCccceeEecCC-cEEEecccccCcceeEEEEcCCeEEEEE
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGN-HFYGFTDKDSTKAHLFIYLPG-FTVAPAVEVKSRKYALKIYHTGTTFYLS 1934 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~-~LyYYKde~d~kp~GsI~L~g-~tVs~a~e~ksRk~aFkI~~~~rtyyFs 1934 (2182)
.++|++.|+.+ . .+++|||+|++. .|+|+... ....+|.|+++. ..|...... .|.|.+++|+|+|.
T Consensus 14 l~~g~v~K~kg---l--~~kkR~liLTd~PrL~Yvdp~-~~~~KGeI~~~~~l~v~~k~~~-----~F~I~tp~RtY~l~ 82 (104)
T PF14593_consen 14 LKQGYVKKRKG---L--FAKKRQLILTDGPRLFYVDPK-KMVLKGEIPWSKELSVEVKSFK-----TFFIHTPKRTYYLE 82 (104)
T ss_dssp EEEEEEEEEET---T--EEEEEEEEEETTTEEEEEETT-TTEEEEEE--STT-EEEECSSS-----EEEEEETTEEEEEE
T ss_pred EEEEEEEEeec---e--EEEEEEEEEccCCEEEEEECC-CCeECcEEecCCceEEEEccCC-----EEEEECCCcEEEEE
Confidence 48999999975 2 399999999998 77777654 457789999997 566655333 59999999999998
Q ss_pred cCCHHHHHHHHHHHHHHhhhc
Q psy84 1935 ADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1935 AdSeeEm~~WI~AL~~As~~~ 1955 (2182)
. .+..+..|+++|+.+...+
T Consensus 83 d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 83 D-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp --TTS-HHHHHHHHHHHHHHH
T ss_pred C-CCCCHHHHHHHHHHHHHHh
Confidence 7 5556888999999876543
No 138
>KOG3751|consensus
Probab=98.06 E-value=6.3e-06 Score=101.92 Aligned_cols=100 Identities=16% Similarity=0.324 Sum_probs=72.7
Q ss_pred CCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccce---eEecCCcEEEeccc-----ccCcceeEEEE
Q psy84 1854 VMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHL---FIYLPGFTVAPAVE-----VKSRKYALKIY 1925 (2182)
Q Consensus 1854 g~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~G---sI~L~g~tVs~a~e-----~ksRk~aFkI~ 1925 (2182)
..++++||||-|+. +.|.|||.||||+...|||+.......++- .-+|.+-.|-..-. .....|+|.|.
T Consensus 315 ~~pei~GfL~~K~d---gkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K 391 (622)
T KOG3751|consen 315 SPPEIQGFLYLKED---GKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIK 391 (622)
T ss_pred CCccccceeeeccc---ccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEee
Confidence 34567999999887 568999999999999999998886666554 33445544433211 11225667766
Q ss_pred cCC------eEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy84 1926 HTG------TTFYLSADSQDEFSSWLGCLSQATIAHD 1956 (2182)
Q Consensus 1926 ~~~------rtyyFsAdSeeEm~~WI~AL~~As~~~~ 1956 (2182)
..+ ---+||||++..+..||.||+.+.++..
T Consensus 392 ~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~KyG~q 428 (622)
T KOG3751|consen 392 PNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKYGMQ 428 (622)
T ss_pred eccccCcccceeeeecccchhHHHHHHHHHHHHHHHH
Confidence 543 2447999999999999999999998754
No 139
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.04 E-value=1.2e-05 Score=78.51 Aligned_cols=68 Identities=28% Similarity=0.346 Sum_probs=58.6
Q ss_pred CcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC-CCcEEEEEEe
Q psy84 214 HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 283 (2182)
Q Consensus 214 ~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s-~~~VtL~lkk 283 (2182)
+||+.+.... ...+|+.|.++|||++. .|++||+|++|||+.|.+|++.++..+|+.. +..++|++.+
T Consensus 3 ~lG~~~~~~~-~~~~V~~v~~~s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r 71 (85)
T cd00988 3 GIGLELKYDD-GGLVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKR 71 (85)
T ss_pred EEEEEEEEcC-CeEEEEEecCCCCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEc
Confidence 6899998654 44699999999999987 6999999999999999999999999999764 5667888853
No 140
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.02 E-value=2.9e-05 Score=81.11 Aligned_cols=91 Identities=15% Similarity=0.300 Sum_probs=73.7
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCc-EEEeccc----cCCCcceEEEEeCCeEEE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGF-TVAPAVE----VKSRKYALKIYHTGTTFY 786 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~-tV~~~~d----~ksRk~aFkL~~~~rtyy 786 (2182)
++|||-.-...- +.|||+|++|...++.+|+++...+.-..|+|... .|..+.. .+...|||+|.+...+||
T Consensus 2 kEGWmVHyT~~d---~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY~ 78 (117)
T cd01239 2 KEGWMVHYTSSD---NRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVYF 78 (117)
T ss_pred ccceEEEEecCc---cceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEEE
Confidence 699998777654 48999999999999999999999999999999983 3443322 135789999999889999
Q ss_pred EEcC--------------------CHHHHHHHHHHHHHh
Q psy84 787 LSAD--------------------SQDEFSSWLGCLSQA 805 (2182)
Q Consensus 787 FaAd--------------------SeeEme~WI~AL~~A 805 (2182)
...+ ..+..+.|-.||++|
T Consensus 79 VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 79 VGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred ecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 8664 345668999999886
No 141
>KOG0932|consensus
Probab=98.01 E-value=2.4e-06 Score=105.61 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=90.2
Q ss_pred ccccCcccccccCCCCcccCCCCceEEEEEeecC-----CC--CCCCCceEEEEEEeCCeEEEEecC-CCCccce-----
Q psy84 1834 FRKKTNLLRGKRRNISVKDLVMPDCEGWLFQRDR-----KI--STVPQWIRGWFIIKGNHFYGFTDK-DSTKAHL----- 1900 (2182)
Q Consensus 1834 ~~KKk~sl~~sRRnis~~~Lg~~dkeGWL~KKg~-----k~--s~~K~WKKRWFVLkd~~LyYYKde-~d~kp~G----- 1900 (2182)
.++-.+++..--..+++.+. ++|+|.+|-. ++ .|.+.||..|-||+|..||+-|++ ...+++-
T Consensus 488 ~g~~~~pfldv~~dpsa~~Y----k~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lk 563 (774)
T KOG0932|consen 488 IGSGSNPFLDVPPDPSAATY----KSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLK 563 (774)
T ss_pred ccCCCCccccCCCCCCchhh----hhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhh
Confidence 35555666666666677776 7999987632 11 256789999999999999999987 2223322
Q ss_pred -eEecCCcEEEecccccCcceeEEEEcCC-eEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy84 1901 -FIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATIAHDR 1957 (2182)
Q Consensus 1901 -sI~L~g~tVs~a~e~ksRk~aFkI~~~~-rtyyFsAdSeeEm~~WI~AL~~As~~~~~ 1957 (2182)
.|.+...-..++.+...|+|+|++.+.+ +.|.|+|.+.+||+.||..|+.++.....
T Consensus 564 navsvHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSa 622 (774)
T KOG0932|consen 564 NAVSVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSA 622 (774)
T ss_pred hhhhhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccC
Confidence 3333333345567777799999999999 99999999999999999999998877653
No 142
>KOG3651|consensus
Probab=97.98 E-value=1.5e-05 Score=93.10 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=76.1
Q ss_pred ceeeEeecCCCCCcceEEEec--CCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEE
Q psy84 1343 LDLATLKKRPGEHLGFCIIPS--FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFL 1420 (2182)
Q Consensus 1343 le~V~L~K~~~e~LG~~I~s~--~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL 1420 (2182)
-+.|+|.|+...-+|+.|-++ +....+|-.|..++||.+-|.|.+||||+.|||++|-|.+--+|+++++.+-+.|++
T Consensus 5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I 84 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI 84 (429)
T ss_pred cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence 456889998888899999877 566779999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCC
Q psy84 1421 TLKKRP 1426 (2182)
Q Consensus 1421 ~LKkrP 1426 (2182)
..-|--
T Consensus 85 hyNKL~ 90 (429)
T KOG3651|consen 85 HYNKLE 90 (429)
T ss_pred Eehhcc
Confidence 886544
No 143
>KOG3571|consensus
Probab=97.98 E-value=1.1e-05 Score=99.26 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=70.0
Q ss_pred cccceEEEee--eCCCCCcceEEEec----CCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHh
Q psy84 199 PSSLDLATLK--KRPGEHLGFCIIPS----FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEE 272 (2182)
Q Consensus 199 ~a~l~~V~L~--K~~~e~LG~~I~~~----~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~ 272 (2182)
.-.|+++++. ...-.=||++|.+- .+|.+||+.|++|++.+..|.|.+||.|+|||.++...++.++.|+.||+
T Consensus 245 smslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLRE 324 (626)
T KOG3571|consen 245 SMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLRE 324 (626)
T ss_pred ccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHH
Confidence 3356665554 32232599999973 57889999999999999999999999999999999999999999999999
Q ss_pred C---CCcEEEEE
Q psy84 273 S---SSDIFLTL 281 (2182)
Q Consensus 273 s---~~~VtL~l 281 (2182)
+ ++.|+|+|
T Consensus 325 aV~~~gPi~ltv 336 (626)
T KOG3571|consen 325 AVSRPGPIKLTV 336 (626)
T ss_pred HhccCCCeEEEE
Confidence 8 67788888
No 144
>KOG3531|consensus
Probab=97.94 E-value=1.9e-06 Score=110.34 Aligned_cols=97 Identities=16% Similarity=0.459 Sum_probs=86.6
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEec--ccccCcceeEEEEcCCeEEEEEc
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPA--VEVKSRKYALKIYHTGTTFYLSA 1935 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a--~e~ksRk~aFkI~~~~rtyyFsA 1935 (2182)
..|||..+-.+ ...|+|-|.|....|||+||+-+|..+..+++|-||+|.+- .+...|.|+|++......|||.|
T Consensus 926 Lsg~Llrkfkn---ssgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffra 1002 (1036)
T KOG3531|consen 926 LSGYLLRKFKN---SSGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRA 1002 (1036)
T ss_pred hhHHHHHHhhc---cccceeeeeeecceeeEeecccccccccccccccccccCCCCCCCCcchhheeeeehhhhHHHHhh
Confidence 58999887653 24799999999999999999999999999999999999874 56667999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCC
Q psy84 1936 DSQDEFSSWLGCLSQATIAHDR 1957 (2182)
Q Consensus 1936 dSeeEm~~WI~AL~~As~~~~~ 1957 (2182)
+++...++||..|+.|..-+++
T Consensus 1003 es~yt~~rw~evi~~a~~s~d~ 1024 (1036)
T KOG3531|consen 1003 ESYYTFERWMEVITDAPSSADR 1024 (1036)
T ss_pred hhhhhhhhHHHHhhcCCccCCC
Confidence 9999999999999998866654
No 145
>KOG3651|consensus
Probab=97.92 E-value=2.4e-05 Score=91.38 Aligned_cols=82 Identities=24% Similarity=0.333 Sum_probs=74.5
Q ss_pred eEEEeeeCCCCCcceEEEec--CCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEE
Q psy84 203 DLATLKKRPGEHLGFCIIPS--FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 280 (2182)
Q Consensus 203 ~~V~L~K~~~e~LG~~I~~~--~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~ 280 (2182)
+.|.|.|....-+|++|-++ +....+|-.|-.++||.+-|.|..||||+.|||++|-|.+--+|+++|+.+-+.|++.
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih 85 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH 85 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence 46788898887889999977 5667799999999999999999999999999999999999999999999999999998
Q ss_pred EEec
Q psy84 281 LKKR 284 (2182)
Q Consensus 281 lkkr 284 (2182)
.-|-
T Consensus 86 yNKL 89 (429)
T KOG3651|consen 86 YNKL 89 (429)
T ss_pred ehhc
Confidence 8544
No 146
>KOG2059|consensus
Probab=97.87 E-value=1.6e-05 Score=101.30 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=78.5
Q ss_pred eEEEEEeecCCCC--CCCCceEEEEEEeCCeEEEEecCCCCccceeEecCC-cEEEec-ccccCcceeEEEEcCCeEEEE
Q psy84 1858 CEGWLFQRDRKIS--TVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPA-VEVKSRKYALKIYHTGTTFYL 1933 (2182)
Q Consensus 1858 keGWL~KKg~k~s--~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g-~tVs~a-~e~ksRk~aFkI~~~~rtyyF 1933 (2182)
++|.|.|+..+++ +.+.+|||||.|+...|.|.|+.. ..+.+.|+|.+ -.|+.. +..-..+++|+|.|.+++.||
T Consensus 567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~-~q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~drtly~ 645 (800)
T KOG2059|consen 567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG-KQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDRTLYV 645 (800)
T ss_pred cccceEeccccccchhhhhhhheEEEeccceeEEecCCc-cCcccceeHHHHHHHHHhhhhccCCCceEEEEecCcceeE
Confidence 5666666654322 457899999999999999999875 57899999999 334433 233346899999999999999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcC
Q psy84 1934 SADSQDEFSSWLGCLSQATIAHD 1956 (2182)
Q Consensus 1934 sAdSeeEm~~WI~AL~~As~~~~ 1956 (2182)
.|.+-.|.+.|+++|.++.....
T Consensus 646 Q~~n~vEandWldaL~kvs~~N~ 668 (800)
T KOG2059|consen 646 QAKNCVEANDWLDALRKVSCCNQ 668 (800)
T ss_pred ecCCchHHHHHHHHHHHHhccCc
Confidence 99999999999999999887654
No 147
>KOG3571|consensus
Probab=97.85 E-value=3.1e-05 Score=95.51 Aligned_cols=88 Identities=25% Similarity=0.295 Sum_probs=73.0
Q ss_pred ccCCcccceeeEeecCC--CCCcceEEEec----CCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHH
Q psy84 1336 LLLQPSSLDLATLKKRP--GEHLGFCIIPS----FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMA 1409 (2182)
Q Consensus 1336 l~~q~a~le~V~L~K~~--~e~LG~~I~s~----~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~ 1409 (2182)
+-..+..|++|++.-+- -.-||++|.+. ++|.+||+.|++|+....-|.|.+||.|+|||..+...++-++.|+
T Consensus 241 iTdSsmslnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVr 320 (626)
T KOG3571|consen 241 ITDSSMSLNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVR 320 (626)
T ss_pred ccccccceeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHH
Confidence 44556778877776322 22499999884 5788999999999999999999999999999999999999999999
Q ss_pred HHHhc---CCcEEEEEE
Q psy84 1410 LFEES---SSDIFLTLK 1423 (2182)
Q Consensus 1410 ~Lre~---~~~vtL~LK 1423 (2182)
.|||+ +.-++|++=
T Consensus 321 vLREaV~~~gPi~ltvA 337 (626)
T KOG3571|consen 321 VLREAVSRPGPIKLTVA 337 (626)
T ss_pred HHHHHhccCCCeEEEEe
Confidence 99997 455777764
No 148
>KOG0521|consensus
Probab=97.83 E-value=7.1e-06 Score=109.10 Aligned_cols=98 Identities=20% Similarity=0.449 Sum_probs=84.9
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEecccccCcceeEEEEcCCeEEEEEc
Q psy84 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSA 1935 (2182)
Q Consensus 1856 ~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyFsA 1935 (2182)
....|+|+++.+ ...+.|+||||-..++.|.|+..-.+......++|..|.|..+++...++|||+|..+.++|.|+|
T Consensus 274 ~~~~~~l~~k~~--~~~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQA 351 (785)
T KOG0521|consen 274 YRMEGYLRKKAS--NASKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQA 351 (785)
T ss_pred hhhhhhhhhhcc--cchhhHHhhhhhhhccccccccccccccccccccchhccccCCcccccceeeEEEecCCcceEEec
Confidence 346789998876 467899999999999999888877555546778888999999988767999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhc
Q psy84 1936 DSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1936 dSeeEm~~WI~AL~~As~~~ 1955 (2182)
+++.+.+.||.+|+..+...
T Consensus 352 es~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 352 ESEKDCQDWISALQNSILSA 371 (785)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 149
>KOG0521|consensus
Probab=97.81 E-value=7.8e-06 Score=108.70 Aligned_cols=97 Identities=21% Similarity=0.459 Sum_probs=84.7
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEEEcC
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSAD 790 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyFaAd 790 (2182)
...|||+++.... .+.|+||||-..++.+.|+....+......++|..|.|..+.+...++|||+|..+.++|.|+|+
T Consensus 275 ~~~~~l~~k~~~~--~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAe 352 (785)
T KOG0521|consen 275 RMEGYLRKKASNA--SKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAE 352 (785)
T ss_pred hhhhhhhhhcccc--hhhHHhhhhhhhccccccccccccccccccccchhccccCCcccccceeeEEEecCCcceEEecC
Confidence 3678999888764 38999999999999999998866655577889999999998777668999999998899999999
Q ss_pred CHHHHHHHHHHHHHhhhhc
Q psy84 791 SQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 791 SeeEme~WI~AL~~As~~~ 809 (2182)
++.+.+.||.+|+.++...
T Consensus 353 s~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 353 SEKDCQDWISALQNSILSA 371 (785)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 9999999999999988843
No 150
>KOG3605|consensus
Probab=97.79 E-value=7.7e-05 Score=94.19 Aligned_cols=83 Identities=27% Similarity=0.396 Sum_probs=72.2
Q ss_pred cccceEEEeeeCCCCCcceEEEecCCcce----EEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCC
Q psy84 199 PSSLDLATLKKRPGEHLGFCIIPSFHGIH----QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESS 274 (2182)
Q Consensus 199 ~a~l~~V~L~K~~~e~LG~~I~~~~~g~h----~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~ 274 (2182)
.+.-+.|+|.|..+|.||+-|.-++=|.+ +|+..++++||.+||+|..||+|+.|||.++||.+..-..-+||+..
T Consensus 643 kE~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~K 722 (829)
T KOG3605|consen 643 KENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLK 722 (829)
T ss_pred hcccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccc
Confidence 44556788999999999999997755544 89999999999999999999999999999999999999999999874
Q ss_pred --CcEEEEE
Q psy84 275 --SDIFLTL 281 (2182)
Q Consensus 275 --~~VtL~l 281 (2182)
..|.|+|
T Consensus 723 nQT~Vklti 731 (829)
T KOG3605|consen 723 NQTAVKLNI 731 (829)
T ss_pred ccceEEEEE
Confidence 5566666
No 151
>KOG3580|consensus
Probab=97.79 E-value=3.3e-05 Score=95.92 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=72.4
Q ss_pred EEEeeeCCCCCcceEEEecCCcc--------eEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCC
Q psy84 204 LATLKKRPGEHLGFCIIPSFHGI--------HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSS 275 (2182)
Q Consensus 204 ~V~L~K~~~e~LG~~I~~~~~g~--------h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~ 275 (2182)
.|+|.|.+.-+||+-|.++-+.. +||+.|.+|+||+ |+|+.||.|+.|||.++..-.|.=.|+.||.++.
T Consensus 11 TvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK 88 (1027)
T KOG3580|consen 11 TVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGK 88 (1027)
T ss_pred eeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhhcc
Confidence 58899999889999999875443 4799999999998 8999999999999999999999999999999999
Q ss_pred cEEEEEEecCCC
Q psy84 276 DIFLTLKKRPCH 287 (2182)
Q Consensus 276 ~VtL~lkkrP~~ 287 (2182)
...++|| ||+.
T Consensus 89 ~A~Itvk-Rprk 99 (1027)
T KOG3580|consen 89 VAAITVK-RPRK 99 (1027)
T ss_pred ceeEEec-ccce
Confidence 9999995 5554
No 152
>KOG2059|consensus
Probab=97.78 E-value=3e-05 Score=98.81 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=76.6
Q ss_pred eeEEEEeecCCCC--CCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcE-EEec-cccCCCcceEEEEeCCeEEEE
Q psy84 712 CEGWLFQRDRKIS--TVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFT-VAPA-VEVKSRKYALKIYHTGTTFYL 787 (2182)
Q Consensus 712 keGWL~Kkg~~~~--~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~t-V~~~-~d~ksRk~aFkL~~~~rtyyF 787 (2182)
++|.|.|+..+.+ +.+.+|||||.|+...|.|.|++.. .+.+.|+|.+.. |+.. +..-..+++|+|++++++.||
T Consensus 567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~-q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~drtly~ 645 (800)
T KOG2059|consen 567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGK-QPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDRTLYV 645 (800)
T ss_pred cccceEeccccccchhhhhhhheEEEeccceeEEecCCcc-CcccceeHHHHHHHHHhhhhccCCCceEEEEecCcceeE
Confidence 4455555544433 2378999999999999999999755 889999999843 2222 233457899999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhhhhc
Q psy84 788 SADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 788 aAdSeeEme~WI~AL~~As~~~ 809 (2182)
.|.+-.|.+.|+++|.+.....
T Consensus 646 Q~~n~vEandWldaL~kvs~~N 667 (800)
T KOG2059|consen 646 QAKNCVEANDWLDALRKVSCCN 667 (800)
T ss_pred ecCCchHHHHHHHHHHHHhccC
Confidence 9999999999999999998843
No 153
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.77 E-value=0.00017 Score=75.91 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=75.3
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCC-----------CccceeEecCCcEEEecccccCcceeEEEEc
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS-----------TKAHLFIYLPGFTVAPAVEVKSRKYALKIYH 1926 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d-----------~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~ 1926 (2182)
++|-|.|-+.. .+.++.|+|.|=++.|.|-|.... -..++.|+|..+.|.-.++...-+++|+|.+
T Consensus 6 ~EG~L~ki~~~---~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~ 82 (112)
T cd01261 6 MEGTLTRVGPS---KKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIIL 82 (112)
T ss_pred ccCcEEEEecc---cCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEc
Confidence 78999988752 357899999999999988875432 2345569999988876666555689999998
Q ss_pred C-CeEEEEEcCCHHHHHHHHHHHHHHhh
Q psy84 1927 T-GTTFYLSADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1927 ~-~rtyyFsAdSeeEm~~WI~AL~~As~ 1953 (2182)
. ++.|.|+|.|+++..+||++|..+..
T Consensus 83 ~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 83 KDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 6 58999999999999999999998764
No 154
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=97.77 E-value=8.8e-05 Score=72.89 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=53.7
Q ss_pred CcceEEEecCC-cceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEEEEEe
Q psy84 214 HLGFCIIPSFH-GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 283 (2182)
Q Consensus 214 ~LG~~I~~~~~-g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL~lkk 283 (2182)
.||+.+..... +..+|..|.++|||++.| |++||.|++|||+.| -+..++.+.|... +..|+|++++
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 58999987754 456899999999999987 999999999999999 4557888888543 6778888865
No 155
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=97.76 E-value=9.7e-05 Score=72.59 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=53.9
Q ss_pred CcceEEEecCC-cceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEe
Q psy84 1355 HLGFCIIPSFH-GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 1424 (2182)
Q Consensus 1355 ~LG~~I~s~~~-G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKk 1424 (2182)
.||+.+..... +..+|..|.++|||++.| |++||.|++|||+.| -+..++.+.|... +..|+|++++
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 48999988864 455899999999999988 999999999999999 4557888888654 5777777765
No 156
>KOG3751|consensus
Probab=97.71 E-value=5.3e-05 Score=94.05 Aligned_cols=97 Identities=16% Similarity=0.341 Sum_probs=72.4
Q ss_pred CCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEE---EEcCCcEEEeccccC-----CCcceEEEEe
Q psy84 709 MPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLF---IYLPGFTVAPAVEVK-----SRKYALKIYH 780 (2182)
Q Consensus 709 ~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGs---I~L~g~tV~~~~d~k-----sRk~aFkL~~ 780 (2182)
.++++|+|+.+..+. +.|||.||||+..-|||+-....+.++.. .+|.+..|..+-..+ .-.|+|.|+-
T Consensus 316 ~pei~GfL~~K~dgk---KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~ 392 (622)
T KOG3751|consen 316 PPEIQGFLYLKEDGK---KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKP 392 (622)
T ss_pred Cccccceeeeccccc---ccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeee
Confidence 345799999998764 69999999999999999988777777653 455554444432211 1256777765
Q ss_pred CC------eEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy84 781 TG------TTFYLSADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 781 ~~------rtyyFaAdSeeEme~WI~AL~~As~~ 808 (2182)
.+ ---+|||+++..+..|+.||+.+.+.
T Consensus 393 ~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~KyG 426 (622)
T KOG3751|consen 393 NKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKYG 426 (622)
T ss_pred ccccCcccceeeeecccchhHHHHHHHHHHHHHH
Confidence 43 25579999999999999999999883
No 157
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=97.71 E-value=0.00022 Score=74.13 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=63.9
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCC-eEEEEecCCCCcceEEEEcCCc-EEEeccccCCCcceEEEEeCCeEEEE
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGN-HFYGFTDKDSTKAHLFIYLPGF-TVAPAVEVKSRKYALKIYHTGTTFYL 787 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~-~LyYYKdk~dkkpkGsI~L~g~-tV~~~~d~ksRk~aFkL~~~~rtyyF 787 (2182)
+.++|++.|+.+- .+|+|||+|++. .|+|+.. .....+|.|++..+ +|.... .-.|.|.+++|+|+|
T Consensus 13 Il~~g~v~K~kgl-----~~kkR~liLTd~PrL~Yvdp-~~~~~KGeI~~~~~l~v~~k~-----~~~F~I~tp~RtY~l 81 (104)
T PF14593_consen 13 ILKQGYVKKRKGL-----FAKKRQLILTDGPRLFYVDP-KKMVLKGEIPWSKELSVEVKS-----FKTFFIHTPKRTYYL 81 (104)
T ss_dssp EEEEEEEEEEETT-----EEEEEEEEEETTTEEEEEET-TTTEEEEEE--STT-EEEECS-----SSEEEEEETTEEEEE
T ss_pred EEEEEEEEEeece-----EEEEEEEEEccCCEEEEEEC-CCCeECcEEecCCceEEEEcc-----CCEEEEECCCcEEEE
Confidence 4589999999754 399999999998 6666654 45578899999974 444422 226999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhhhh
Q psy84 788 SADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 788 aAdSeeEme~WI~AL~~As~~ 808 (2182)
.. .+.++..|+++|+.+...
T Consensus 82 ~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 82 ED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp E--TTS-HHHHHHHHHHHHHH
T ss_pred EC-CCCCHHHHHHHHHHHHHH
Confidence 87 555688899999987653
No 158
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.70 E-value=0.00029 Score=74.23 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=75.1
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC-----------CcceEEEEcCCcEEEeccccCCCcceEEEEe
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS-----------TKAHLFIYLPGFTVAPAVEVKSRKYALKIYH 780 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d-----------kkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~ 780 (2182)
++|-|.|-.... +.++.|+|-|=++.|.|=|.... -.-++.|+|.++.|...++...-+++|.|.+
T Consensus 6 ~EG~L~ki~~~~---~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~ 82 (112)
T cd01261 6 MEGTLTRVGPSK---KAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIIL 82 (112)
T ss_pred ccCcEEEEeccc---CCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEc
Confidence 789999887542 47899999999999988775332 2345569999988887666555689999998
Q ss_pred C-CeEEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 781 T-GTTFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 781 ~-~rtyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
. ++.|.|+|.|++|..+||++|..+..
T Consensus 83 ~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 83 KDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 6 48999999999999999999988764
No 159
>KOG3605|consensus
Probab=97.70 E-value=5.4e-05 Score=95.53 Aligned_cols=86 Identities=26% Similarity=0.361 Sum_probs=72.9
Q ss_pred ccceeeEeecCCCCCcceEEEecCCcc----eEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCC
Q psy84 1341 SSLDLATLKKRPGEHLGFCIIPSFHGI----HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSS 1416 (2182)
Q Consensus 1341 a~le~V~L~K~~~e~LG~~I~s~~~G~----h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~ 1416 (2182)
+.-+.|+|-|..+|.||..|.-++=|- ++|+..++++||.+||+|..||+|+.|||.+.||.+..-....||+..+
T Consensus 644 E~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~Kn 723 (829)
T KOG3605|consen 644 ENQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKN 723 (829)
T ss_pred cccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccc
Confidence 344578899999999999999886553 4899999999999999999999999999999999999999999999865
Q ss_pred cEEEEEEeCC
Q psy84 1417 DIFLTLKKRP 1426 (2182)
Q Consensus 1417 ~vtL~LKkrP 1426 (2182)
...++|-.+|
T Consensus 724 QT~VkltiV~ 733 (829)
T KOG3605|consen 724 QTAVKLNIVS 733 (829)
T ss_pred cceEEEEEec
Confidence 5544444333
No 160
>PLN02866 phospholipase D
Probab=97.68 E-value=0.00023 Score=95.64 Aligned_cols=82 Identities=17% Similarity=0.333 Sum_probs=69.0
Q ss_pred CCceEEEEEEeCCeEEEEecCCCCccceeEecCC---------cEEEeccccc---CcceeEEEEcCCeEEEEEcCCHHH
Q psy84 1873 PQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG---------FTVAPAVEVK---SRKYALKIYHTGTTFYLSADSQDE 1940 (2182)
Q Consensus 1873 K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g---------~tVs~a~e~k---sRk~aFkI~~~~rtyyFsAdSeeE 1940 (2182)
..|.||||||++++|.|.++..+.+++.+|.++- ..|..+...+ .-+|.|+|...+|+..|.|.+...
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~ 295 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAK 295 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEecCceEEEEEECCHHH
Confidence 4699999999999999999998888888887762 3455543332 348899999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy84 1941 FSSWLGCLSQATIA 1954 (2182)
Q Consensus 1941 m~~WI~AL~~As~~ 1954 (2182)
+..|+.+|+.+...
T Consensus 296 ~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 296 VKDWVAAINDAGLR 309 (1068)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999854
No 161
>KOG3552|consensus
Probab=97.67 E-value=6.2e-05 Score=97.44 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=67.0
Q ss_pred ceeeEeecCCCCCcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEE
Q psy84 1343 LDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTL 1422 (2182)
Q Consensus 1343 le~V~L~K~~~e~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~L 1422 (2182)
.+.|++.+..+ |||-+..+ ..++|..|++|+|+ -|+|.+||+|++|||..|..-+.+.|++++|++...|.|+|
T Consensus 56 pr~vq~~r~~~--lGFgfvag--rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV 129 (1298)
T KOG3552|consen 56 PRQVQLQRNAS--LGFGFVAG--RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV 129 (1298)
T ss_pred chhhhhhcccc--ccceeecC--CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence 56788887665 66666655 66789999999999 78999999999999999999999999999999999999998
Q ss_pred EeCC
Q psy84 1423 KKRP 1426 (2182)
Q Consensus 1423 KkrP 1426 (2182)
- +|
T Consensus 130 ~-qP 132 (1298)
T KOG3552|consen 130 C-QP 132 (1298)
T ss_pred e-cc
Confidence 4 44
No 162
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.62 E-value=0.00018 Score=93.60 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=77.3
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecC--CCCcceEEEEcCC-cEEEec-cc-c-CCCcceEEEEeCC-
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK--DSTKAHLFIYLPG-FTVAPA-VE-V-KSRKYALKIYHTG- 782 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk--~dkkpkGsI~L~g-~tV~~~-~d-~-ksRk~aFkL~~~~- 782 (2182)
+.++|||+.-+.+..+....++|||||.+..|.|||.+ ....|..+..+++ |+|+.. -. . ..--|.|.|+..-
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~ 83 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 83 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCCC
Confidence 45899999999887767889999999999999999994 3345555566666 555432 11 1 1124789998864
Q ss_pred --eEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy84 783 --TTFYLSADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 783 --rtyyFaAdSeeEme~WI~AL~~As~~~ 809 (2182)
+...|+|-+.+|..+||.||+.|+...
T Consensus 84 ~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 84 KYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred ccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 788999999999999999999998843
No 163
>KOG3552|consensus
Probab=97.60 E-value=5.6e-05 Score=97.83 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=66.2
Q ss_pred ceEEEeeeCCCCCcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEE
Q psy84 202 LDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTL 281 (2182)
Q Consensus 202 l~~V~L~K~~~e~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~l 281 (2182)
.++|++.+.. .|||-+..+ -.++|-.|.+|||+. |+|.+||+|++|||..|...+.+-|++++|++-..|.|+|
T Consensus 56 pr~vq~~r~~--~lGFgfvag--rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV 129 (1298)
T KOG3552|consen 56 PRQVQLQRNA--SLGFGFVAG--RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV 129 (1298)
T ss_pred chhhhhhccc--cccceeecC--CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence 6778887754 566666644 677899999999988 8999999999999999999999999999999999999999
Q ss_pred E
Q psy84 282 K 282 (2182)
Q Consensus 282 k 282 (2182)
.
T Consensus 130 ~ 130 (1298)
T KOG3552|consen 130 C 130 (1298)
T ss_pred e
Confidence 5
No 164
>KOG0932|consensus
Probab=97.59 E-value=2.9e-05 Score=96.38 Aligned_cols=99 Identities=19% Similarity=0.287 Sum_probs=74.4
Q ss_pred eeEEEEeecCCC-------CCCCCceeEEEEEeCCeEEEEecCCCC-c------ceEEEEcCCcEEEeccccCCCcceEE
Q psy84 712 CEGWLFQRDRKI-------STVPQWIRGWFIIKGNHFYGFTDKDST-K------AHLFIYLPGFTVAPAVEVKSRKYALK 777 (2182)
Q Consensus 712 keGWL~Kkg~~~-------~~~k~WKKRWFVLkd~~LyYYKdk~dk-k------pkGsI~L~g~tV~~~~d~ksRk~aFk 777 (2182)
+.|+|.++-..- .+.++||..|-||+|..||+-||+--. + .+..|.+.-....++.+...|+|+|+
T Consensus 508 k~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~AtdY~KKp~Vf~ 587 (774)
T KOG0932|consen 508 KSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPATDYSKKPHVFK 587 (774)
T ss_pred hhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCcccccCCceEE
Confidence 789987653210 135899999999999999999984211 1 12224444343445566677999999
Q ss_pred EEeCC-eEEEEEcCCHHHHHHHHHHHHHhhhhcc
Q psy84 778 IYHTG-TTFYLSADSQDEFSSWLGCLSQATIAHD 810 (2182)
Q Consensus 778 L~~~~-rtyyFaAdSeeEme~WI~AL~~As~~~~ 810 (2182)
|.+.+ +.|.|+|.+.+||+.||..|+-++....
T Consensus 588 lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fS 621 (774)
T KOG0932|consen 588 LRTADWRVFLFQAPSQEEMQSWIERINLVAAAFS 621 (774)
T ss_pred EEeccceeEEEeCCCHHHHHHHHHHHHHHHHhcc
Confidence 99998 9999999999999999999999888653
No 165
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.56 E-value=0.00011 Score=96.76 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=60.5
Q ss_pred CCcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECC-----eEecCCCHHHHHHHHHhc-CCcEEEEEEe
Q psy84 1354 EHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINY-----QTVVGWDVKQVMALFEES-SSDIFLTLKK 1424 (2182)
Q Consensus 1354 e~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNG-----q~VvGw~h~~Vv~~Lre~-~~~vtL~LKk 1424 (2182)
+|+|+.+... +|..+|..|.+||||+..+.|++||+|+.||| ..|+||+..+|+++|+.. +..|.|+|++
T Consensus 244 ~GIGa~l~~~-~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 244 EGIGAVLQMD-DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred eEEEEEEEEe-CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 4899999876 45578999999999999988999999999994 478899999999999865 6778888875
No 166
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.52 E-value=0.00034 Score=91.19 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=77.2
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecC--CCCccceeEecCC-cEEEec--c-cccCcceeEEEEcCC-
Q psy84 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK--DSTKAHLFIYLPG-FTVAPA--V-EVKSRKYALKIYHTG- 1928 (2182)
Q Consensus 1856 ~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde--~d~kp~GsI~L~g-~tVs~a--~-e~ksRk~aFkI~~~~- 1928 (2182)
+.++|||+.-|...-+...-.+|||||.+..|.|||.+ ....|..+..+.+ |.|+-. . -...--|.|.|+...
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~ 83 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 83 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCCC
Confidence 45899999999865567778999999999999999986 3345555655666 666543 1 111124788888763
Q ss_pred --eEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy84 1929 --TTFYLSADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1929 --rtyyFsAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
+..-|.|-+.+|..+||.||+.|+...
T Consensus 84 ~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 84 KYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred ccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 778899999999999999999999864
No 167
>KOG3580|consensus
Probab=97.51 E-value=0.00015 Score=90.24 Aligned_cols=80 Identities=23% Similarity=0.240 Sum_probs=70.8
Q ss_pred eeEeecCCCCCcceEEEecCCcc--------eEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCC
Q psy84 1345 LATLKKRPGEHLGFCIIPSFHGI--------HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSS 1416 (2182)
Q Consensus 1345 ~V~L~K~~~e~LG~~I~s~~~G~--------h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~ 1416 (2182)
.|+|.|.+.-+||+-|.++-+.. +||+.|.+|+|| -|+|..||.|+.|||.++..-.|.=.|+.||.++.
T Consensus 11 TvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK 88 (1027)
T KOG3580|consen 11 TVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGK 88 (1027)
T ss_pred eeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHHhhcc
Confidence 58899988889999998884443 479999999999 57999999999999999999999999999999999
Q ss_pred cEEEEEEeCCC
Q psy84 1417 DIFLTLKKRPC 1427 (2182)
Q Consensus 1417 ~vtL~LKkrP~ 1427 (2182)
-..+||| ||+
T Consensus 89 ~A~Itvk-Rpr 98 (1027)
T KOG3580|consen 89 VAAITVK-RPR 98 (1027)
T ss_pred ceeEEec-ccc
Confidence 9999996 554
No 168
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.50 E-value=0.00015 Score=95.52 Aligned_cols=71 Identities=25% Similarity=0.414 Sum_probs=60.8
Q ss_pred CCCcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECC-----eEecCCCHHHHHHHHHhC-CCcEEEEEEe
Q psy84 212 GEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINY-----QTVVGWDVKQVMALFEES-SSDIFLTLKK 283 (2182)
Q Consensus 212 ~e~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNG-----q~VvGw~h~eVv~lLr~s-~~~VtL~lkk 283 (2182)
-+++|+.+... +|..+|..|.+||||++.++|++||.|+.||| +.|+||+.++|+++|+-. +..|+|+|++
T Consensus 243 ~~GIGa~l~~~-~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 243 LEGIGAVLQMD-DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred eeEEEEEEEEe-CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 35889999865 45679999999999999989999999999994 478899999999999853 6778888864
No 169
>PLN02866 phospholipase D
Probab=97.49 E-value=0.00062 Score=91.69 Aligned_cols=82 Identities=17% Similarity=0.333 Sum_probs=67.9
Q ss_pred CCceeEEEEEeCCeEEEEecCCCCcceEEEEcCC---------cEEEeccccC---CCcceEEEEeCCeEEEEEcCCHHH
Q psy84 727 PQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG---------FTVAPAVEVK---SRKYALKIYHTGTTFYLSADSQDE 794 (2182)
Q Consensus 727 k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g---------~tV~~~~d~k---sRk~aFkL~~~~rtyyFaAdSeeE 794 (2182)
..|.||||||+.++|.|.++..+.++..+|.++- ..+..+...+ .-+|.|+|.+.+|...|.|.|...
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~ 295 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAK 295 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEecCceEEEEEECCHHH
Confidence 4699999999999999999998888988877772 2333333322 247899999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy84 795 FSSWLGCLSQATIA 808 (2182)
Q Consensus 795 me~WI~AL~~As~~ 808 (2182)
+..|+.+|+.+...
T Consensus 296 ~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 296 VKDWVAAINDAGLR 309 (1068)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999853
No 170
>KOG1739|consensus
Probab=97.38 E-value=0.00015 Score=89.23 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=77.1
Q ss_pred CCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecC--CCCccceeEecCCcEEEec--ccccCcceeEEEEcCCe
Q psy84 1854 VMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK--DSTKAHLFIYLPGFTVAPA--VEVKSRKYALKIYHTGT 1929 (2182)
Q Consensus 1854 g~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde--~d~kp~GsI~L~g~tVs~a--~e~ksRk~aFkI~~~~r 1929 (2182)
|.....|+|-| +.++...|+-|||||+++.|.||+++ .+.-++|.|.|....|..- +++ .|-|.....
T Consensus 22 gw~e~~G~lsk---wtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEfDe~-----rfdIsvn~n 93 (611)
T KOG1739|consen 22 GWVERCGVLSK---WTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEFDEC-----RFDISVNDN 93 (611)
T ss_pred Cchhhcceeee---eecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccchhh-----eeeeEeccc
Confidence 34457788888 55578899999999999999999988 5567999999999766553 344 499999899
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhh
Q psy84 1930 TFYLSADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1930 tyyFsAdSeeEm~~WI~AL~~As~ 1953 (2182)
.+|+.|.+.+..+.|+++|..-..
T Consensus 94 v~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 94 VWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred eeeehhcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999998665
No 171
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.36 E-value=0.00045 Score=66.57 Aligned_cols=65 Identities=28% Similarity=0.467 Sum_probs=52.0
Q ss_pred cceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEEe
Q psy84 1356 LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 1424 (2182)
Q Consensus 1356 LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LKk 1424 (2182)
|||.+-..... .+|+.|.++|||...| |++||+|++|||..|..| .++..+|... +..+.|++++
T Consensus 3 ~~~~~g~~~~~-~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r 68 (79)
T cd00989 3 LGFVPGGPPIE-PVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVER 68 (79)
T ss_pred eeEeccCCccC-cEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEE
Confidence 67776655444 5899999999998766 999999999999999866 6788888776 4567777754
No 172
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.35 E-value=0.00047 Score=66.42 Aligned_cols=65 Identities=28% Similarity=0.467 Sum_probs=51.7
Q ss_pred cceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC-CCcEEEEEEe
Q psy84 215 LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 283 (2182)
Q Consensus 215 LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s-~~~VtL~lkk 283 (2182)
|||.+-..... .+|+.|.++|||+..| |++||+|++|||+.|..| .++..+|... +..+.|++.+
T Consensus 3 ~~~~~g~~~~~-~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r 68 (79)
T cd00989 3 LGFVPGGPPIE-PVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVER 68 (79)
T ss_pred eeEeccCCccC-cEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEE
Confidence 56666655443 5899999999999764 999999999999999866 6788888776 4567777753
No 173
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.32 E-value=0.00054 Score=86.24 Aligned_cols=101 Identities=20% Similarity=0.236 Sum_probs=77.5
Q ss_pred HHHHHHhccCCCCc--cccccceEEEe-eeCCCCCcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEec
Q psy84 183 LADEMIREIHDPLL--LQPSSLDLATL-KKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259 (2182)
Q Consensus 183 i~D~I~~~~~dpll--~q~a~l~~V~L-~K~~~e~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~Vv 259 (2182)
..+.+++...||.- ..++..+.... .+.+-+++|++|.....+..+|....+++||++.| |++||.|+.|||..|.
T Consensus 67 ai~g~ls~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~ 145 (406)
T COG0793 67 AIEGMLSSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVG 145 (406)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHhhhhccccccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEcc
Confidence 33557777778743 33333333222 24455699999998754777999999999999998 9999999999999999
Q ss_pred CCCHHHHHHHHHhC-CCcEEEEEEec
Q psy84 260 GWDVKQVMALFEES-SSDIFLTLKKR 284 (2182)
Q Consensus 260 Gw~h~eVv~lLr~s-~~~VtL~lkkr 284 (2182)
|...++++++||.. +..|+|++.+.
T Consensus 146 ~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 146 GVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred CCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 99999999999866 57899999543
No 174
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.31 E-value=0.00062 Score=71.28 Aligned_cols=92 Identities=16% Similarity=0.332 Sum_probs=70.1
Q ss_pred EEEEEeecCCCC-CCCCceEEEEEEeCCeEEEEecCCC-----CccceeEecC--CcEEEec-cccc---CcceeEEEEc
Q psy84 1859 EGWLFQRDRKIS-TVPQWIRGWFIIKGNHFYGFTDKDS-----TKAHLFIYLP--GFTVAPA-VEVK---SRKYALKIYH 1926 (2182)
Q Consensus 1859 eGWL~KKg~k~s-~~K~WKKRWFVLkd~~LyYYKde~d-----~kp~GsI~L~--g~tVs~a-~e~k---sRk~aFkI~~ 1926 (2182)
-|||..+-...+ ..+.||.||++|++..|+.|+..-- ..|.-..+|- -+++... +... ++.+||.|.+
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 499988854212 3589999999999999999998732 3566666666 3544332 2222 5789999998
Q ss_pred CC--eEEEEEcCCHHHHHHHHHHHHH
Q psy84 1927 TG--TTFYLSADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1927 ~~--rtyyFsAdSeeEm~~WI~AL~~ 1950 (2182)
.. .++||+.|+..|+..|..||.+
T Consensus 82 g~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceeeEEEEecCHHHHHHHHHHHhc
Confidence 86 7999999999999999999975
No 175
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.28 E-value=0.00048 Score=87.94 Aligned_cols=92 Identities=13% Similarity=0.278 Sum_probs=62.8
Q ss_pred CCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecC---CCCc---cceeEecCCcEEEec--ccccCcceeEEEEc
Q psy84 1855 MPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK---DSTK---AHLFIYLPGFTVAPA--VEVKSRKYALKIYH 1926 (2182)
Q Consensus 1855 ~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde---~d~k---p~GsI~L~g~tVs~a--~e~ksRk~aFkI~~ 1926 (2182)
.....|||.|.+.. . .|++|||.+.++.+.+.... .... ..+...+.+ |.++ ....+++++|.|.+
T Consensus 376 Dv~~~G~l~k~~~~---~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~--v~pv~~~~~~~~~~~~~i~~ 449 (478)
T PTZ00267 376 DVTHGGYLYKYSSD---M-RWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVND--VFPVPEVYSQKHPNQLVLWF 449 (478)
T ss_pred CcccceEEeccCCC---c-chhhheEEecCCceEEEeccccccCCCCCccccHHHhcc--cccccHHhcCCCCceEEEEe
Confidence 34589999998763 2 59999999997765554332 1111 122222333 2222 12334799999987
Q ss_pred CC-eEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1927 TG-TTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1927 ~~-rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
.. +.+||.|++++++++||.+|+.|.
T Consensus 450 ~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 450 NNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred cCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 55 889999999999999999999875
No 176
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.00053 Score=86.35 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=64.7
Q ss_pred CCCCcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEEeC
Q psy84 1352 PGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKKR 1425 (2182)
Q Consensus 1352 ~~e~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LKkr 1425 (2182)
+-+++|++|.....+..+|....+|+||++.| |++||.|+.|||..|.|....++++.|+.. +..|+|++.+-
T Consensus 98 ~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 98 EFGGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cccceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 44689999998764777999999999999999 999999999999999999999999999987 67888888654
No 177
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.25 E-value=0.00049 Score=84.41 Aligned_cols=69 Identities=26% Similarity=0.354 Sum_probs=58.9
Q ss_pred CCcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHh-CCCcEEEEEEe
Q psy84 213 EHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEE-SSSDIFLTLKK 283 (2182)
Q Consensus 213 e~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~-s~~~VtL~lkk 283 (2182)
.++|+.+... .+..+|..|.++|||+..| |++||+|++|||+.|.+|+..++..+|+. .+..|+|++.+
T Consensus 51 ~~lG~~~~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 120 (334)
T TIGR00225 51 EGIGIQVGMD-DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILR 120 (334)
T ss_pred EEEEEEEEEE-CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEe
Confidence 3789998765 4566999999999999987 99999999999999999998899988866 45678888864
No 178
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.20 E-value=0.00064 Score=86.83 Aligned_cols=91 Identities=12% Similarity=0.295 Sum_probs=62.8
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEE-ecCC---CCcc--eEEEEcCCcEEEec--cccCCCcceEEEEeC
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF-TDKD---STKA--HLFIYLPGFTVAPA--VEVKSRKYALKIYHT 781 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYY-Kdk~---dkkp--kGsI~L~g~tV~~~--~d~ksRk~aFkL~~~ 781 (2182)
+...|||.+.+... .|++|||.+.++.+... +... ...+ .....+.++ .++ .....++++|.|.+.
T Consensus 377 v~~~G~l~k~~~~~----~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v--~pv~~~~~~~~~~~~~i~~~ 450 (478)
T PTZ00267 377 VTHGGYLYKYSSDM----RWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDV--FPVPEVYSQKHPNQLVLWFN 450 (478)
T ss_pred cccceEEeccCCCc----chhhheEEecCCceEEEeccccccCCCCCccccHHHhccc--ccccHHhcCCCCceEEEEec
Confidence 34799999988653 59999999997655554 3221 1111 122223333 222 123357999999876
Q ss_pred C-eEEEEEcCCHHHHHHHHHHHHHhh
Q psy84 782 G-TTFYLSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 782 ~-rtyyFaAdSeeEme~WI~AL~~As 806 (2182)
. +.++|.|+|++++++||.+|+.|.
T Consensus 451 ~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 451 NGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred CCcEEEEecCChHHHHHHHHHHHHHh
Confidence 5 899999999999999999999875
No 179
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.20 E-value=0.00076 Score=84.54 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=58.5
Q ss_pred CCcceEEEecCC-----cceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHh-CCCcEEEEEEe
Q psy84 213 EHLGFCIIPSFH-----GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEE-SSSDIFLTLKK 283 (2182)
Q Consensus 213 e~LG~~I~~~~~-----g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~-s~~~VtL~lkk 283 (2182)
.++|+.+..... ...+|..|.+||||+..| |++||+|++|||+.|.+|...++..+|+. .+..|+|+|++
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r 160 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRR 160 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEE
Confidence 478888864321 146899999999999886 99999999999999999999999999975 45678898864
No 180
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.17 E-value=0.00081 Score=84.31 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=58.8
Q ss_pred CCcceEEEecCC-----cceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEEe
Q psy84 1354 EHLGFCIIPSFH-----GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 1424 (2182)
Q Consensus 1354 e~LG~~I~s~~~-----G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LKk 1424 (2182)
.++|+.+..... ...+|..|.+||||+..| |++||+|++|||+.|.+|...++..+|+.. +..|+|++++
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r 160 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRR 160 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEE
Confidence 378998865421 146899999999999887 999999999999999999999999999753 6678898874
No 181
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.17 E-value=0.0013 Score=69.03 Aligned_cols=91 Identities=16% Similarity=0.350 Sum_probs=66.8
Q ss_pred EEEEeecCCCC-CCCCceeEEEEEeCCeEEEEecCCC-----CcceEEEEcC--CcEEEe-ccccC---CCcceEEEEeC
Q psy84 714 GWLFQRDRKIS-TVPQWIRGWFIIKGNHFYGFTDKDS-----TKAHLFIYLP--GFTVAP-AVEVK---SRKYALKIYHT 781 (2182)
Q Consensus 714 GWL~Kkg~~~~-~~k~WKKRWFVLkd~~LyYYKdk~d-----kkpkGsI~L~--g~tV~~-~~d~k---sRk~aFkL~~~ 781 (2182)
|||..+-...+ ..+.||.+|++|++..|+.|+..-- ..|....+|- -+++.. ..... ++++||.|...
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg 82 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTG 82 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcC
Confidence 88887744322 2479999999999999999998532 2444455555 233321 12222 57899999988
Q ss_pred C--eEEEEEcCCHHHHHHHHHHHHH
Q psy84 782 G--TTFYLSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 782 ~--rtyyFaAdSeeEme~WI~AL~~ 804 (2182)
. .++||+.|+..|+..|..||.+
T Consensus 83 ~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 83 TQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CceeeEEEEecCHHHHHHHHHHHhc
Confidence 6 8999999999999999999975
No 182
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.17 E-value=0.00064 Score=83.41 Aligned_cols=68 Identities=25% Similarity=0.342 Sum_probs=58.3
Q ss_pred CcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEEe
Q psy84 1355 HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 1424 (2182)
Q Consensus 1355 ~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LKk 1424 (2182)
++|+.+... .+..+|..|.++|||+..| |++||+|++|||+.|.+|...++..+|+.. +..++|++++
T Consensus 52 ~lG~~~~~~-~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 120 (334)
T TIGR00225 52 GIGIQVGMD-DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILR 120 (334)
T ss_pred EEEEEEEEE-CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEe
Confidence 689999765 4556899999999998888 999999999999999999988998888764 5667887764
No 183
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.17 E-value=0.00099 Score=64.58 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=47.9
Q ss_pred cceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEEe
Q psy84 215 LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 283 (2182)
Q Consensus 215 LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lkk 283 (2182)
||+.+... ++..+|+.|.++|||...| |++||+|++|||+.|..|. ++++.+ ..+..++|++.+
T Consensus 3 ~G~~~~~~-~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~--~~l~~~-~~~~~v~l~v~r 66 (80)
T cd00990 3 LGLTLDKE-EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQ--DRLKEY-QAGDPVELTVFR 66 (80)
T ss_pred ccEEEEcc-CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHH--HHHHhc-CCCCEEEEEEEE
Confidence 68888754 4556999999999999875 9999999999999997522 333332 235677887753
No 184
>KOG3678|consensus
Probab=97.14 E-value=0.00048 Score=84.57 Aligned_cols=84 Identities=29% Similarity=0.544 Sum_probs=73.9
Q ss_pred cCCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhh-ccCCcchhHHHHHHHHHHHHHhh-hc-ccCcc
Q psy84 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLE-HHGICKVGHQEIILEAVDHLRNF-HY-ELDHE 81 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~-~LGV~~iGHre~IL~aV~~Lr~l-~y-~l~~E 81 (2182)
.|-.|+..+|.-|++.+ ++.+|++.|....++|.-||+|+..||+ ++|+.+-=||++.|+.++.|+.+ +| ..+..
T Consensus 461 qVPgWt~AdVQ~WvkkI--GFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv~AdYSs~DeS 538 (832)
T KOG3678|consen 461 QVPGWTCADVQYWVKKI--GFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAADYSSVDES 538 (832)
T ss_pred cCCCcchHHHHHHHHHh--CHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhcccccchh
Confidence 57899999999999988 5999999999999999999999999996 69999999999999999999966 55 46777
Q ss_pred hHHHHHHHH
Q psy84 82 NLQLLALRV 90 (2182)
Q Consensus 82 NLqsLa~~L 90 (2182)
||...-..|
T Consensus 539 NLdn~L~gL 547 (832)
T KOG3678|consen 539 NLDNFLMGL 547 (832)
T ss_pred hHHHHHhcC
Confidence 776555544
No 185
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.13 E-value=0.0011 Score=64.28 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=47.5
Q ss_pred cceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEe
Q psy84 1356 LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 1424 (2182)
Q Consensus 1356 LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKk 1424 (2182)
||+.+... ++..+|+.|.++|||...| |++||+|++|||+.|..| .++++.++ .+..++|++.+
T Consensus 3 ~G~~~~~~-~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~--~~~l~~~~-~~~~v~l~v~r 66 (80)
T cd00990 3 LGLTLDKE-EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDAL--QDRLKEYQ-AGDPVELTVFR 66 (80)
T ss_pred ccEEEEcc-CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHH--HHHHHhcC-CCCEEEEEEEE
Confidence 78888755 4456899999999998877 999999999999999652 23333321 34567777763
No 186
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.06 E-value=0.0056 Score=64.33 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=70.4
Q ss_pred eEEEEEeecCCCCCCCCce-EEEEEEeCCeEEEEecC----CCCccceeEecCCcEEEecccccC------cceeEEEEc
Q psy84 1858 CEGWLFQRDRKISTVPQWI-RGWFIIKGNHFYGFTDK----DSTKAHLFIYLPGFTVAPAVEVKS------RKYALKIYH 1926 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WK-KRWFVLkd~~LyYYKde----~d~kp~GsI~L~g~tVs~a~e~ks------Rk~aFkI~~ 1926 (2182)
++|=|.+.+. .+.|+ .|+|.|=|+.|.|-|.. ..-.-+|.|+|..+.|.-.++... -+++|+|++
T Consensus 4 ~~Gel~~~s~----~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 4 LQGEATRQKQ----NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred EeeeEEEEec----ccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEE
Confidence 6888888764 22453 68899999999998854 234568899999999988754432 389999998
Q ss_pred CC--eEEEEEcCCHHHHHHHHHHHHH
Q psy84 1927 TG--TTFYLSADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1927 ~~--rtyyFsAdSeeEm~~WI~AL~~ 1950 (2182)
.. ..|.|+|.|+++.++||+||..
T Consensus 80 ~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 ESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred cCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 76 7899999999999999999975
No 187
>KOG1739|consensus
Probab=97.00 E-value=0.00076 Score=83.42 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecC--CCCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEE
Q psy84 708 VMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK--DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTF 785 (2182)
Q Consensus 708 g~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk--~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rty 785 (2182)
|.+..+|+|.|..... ..|+-|||||+.+.|.||+++ .+.-++|.|.|....|..-+. ....|-|......+
T Consensus 22 gw~e~~G~lskwtnyi---~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEf---De~rfdIsvn~nv~ 95 (611)
T KOG1739|consen 22 GWVERCGVLSKWTNYI---HGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEF---DECRFDISVNDNVW 95 (611)
T ss_pred Cchhhcceeeeeeccc---ccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccc---hhheeeeEecccee
Confidence 4566899999998664 589999999999999999985 566789999999977665422 23469999989999
Q ss_pred EEEcCCHHHHHHHHHHHHHhhh
Q psy84 786 YLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 786 yFaAdSeeEme~WI~AL~~As~ 807 (2182)
|+.|.+.+..+.|+++|..-..
T Consensus 96 ~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 96 YLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred eehhcCcHHHHHHHHHHHHHhh
Confidence 9999999999999999987555
No 188
>KOG0248|consensus
Probab=96.97 E-value=0.00038 Score=88.43 Aligned_cols=95 Identities=14% Similarity=0.222 Sum_probs=78.5
Q ss_pred CCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecC--CCCccceeEecCC-cEEEecccccCcceeEEEEcCCeEE
Q psy84 1855 MPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK--DSTKAHLFIYLPG-FTVAPAVEVKSRKYALKIYHTGTTF 1931 (2182)
Q Consensus 1855 ~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde--~d~kp~GsI~L~g-~tVs~a~e~ksRk~aFkI~~~~rty 1931 (2182)
..++.||+.+.++ ..|.|+|||||++.....||+.. ...++.|.|++.. +.+... +-.+.|.+......|
T Consensus 248 ~~ekSgy~~~~~s---~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~----~~s~~fqli~~t~~~ 320 (936)
T KOG0248|consen 248 TMEKSGYWTQLTS---RIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ----GAAYAFQLITSTDKM 320 (936)
T ss_pred hhhcccchhcchH---HHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc----chhHHhhhhhhceeE
Confidence 3457899998875 46899999999999999999988 4568999999988 444433 246789999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHHhhhcC
Q psy84 1932 YLSADSQDEFSSWLGCLSQATIAHD 1956 (2182)
Q Consensus 1932 yFsAdSeeEm~~WI~AL~~As~~~~ 1956 (2182)
+|-++++--...|+..|..++....
T Consensus 321 ~~~~~s~~lt~dw~~iL~~~iKv~~ 345 (936)
T KOG0248|consen 321 NFMTESERTTHDWVTILSAAIKATT 345 (936)
T ss_pred EEeccChhhhhhhHHHHHHHHHHHh
Confidence 9999999999999999988876543
No 189
>KOG3553|consensus
Probab=96.94 E-value=0.00084 Score=68.41 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=50.3
Q ss_pred CcceEEEecC------------CcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC
Q psy84 214 HLGFCIIPSF------------HGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES 273 (2182)
Q Consensus 214 ~LG~~I~~~~------------~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s 273 (2182)
.+||.|-++- +-.++|++|.+||||+..| |+.+|.|+||||-...=.+|+..|+.|+..
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~ 106 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE 106 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh
Confidence 4788887542 2245999999999999885 999999999999999999999999999874
No 190
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.88 E-value=0.0049 Score=62.52 Aligned_cols=84 Identities=11% Similarity=0.060 Sum_probs=65.6
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCC-c-EEEecccccCcceeEEEEcCCeEEEEEc
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-F-TVAPAVEVKSRKYALKIYHTGTTFYLSA 1935 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g-~-tVs~a~e~ksRk~aFkI~~~~rtyyFsA 1935 (2182)
+.|.+.|+.+ + .+++|=++|++.==.+|-|......+|.|++.. . .|+.. ....|.|.+++|+|||.
T Consensus 3 ~~g~v~Kr~g----l-f~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~~~l~v~~~-----~~~~F~I~Tp~rty~le- 71 (89)
T cd01262 3 KIGAVKKRKG----L-FAKKRQLILTNGPRLIYVDPVKKVVKGEIPWSDVELRVEVK-----NSSHFFVHTPNKVYSFE- 71 (89)
T ss_pred eeeeeeehhc----c-ccceeeEEEecCceEEEEcCCcCeEEeEecccccceEEEEe-----cCccEEEECCCceEEEE-
Confidence 6888988775 1 689999999987555555667788999999998 2 23332 23569999999999994
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy84 1936 DSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1936 dSeeEm~~WI~AL~~As 1952 (2182)
|.+....+|+++|..+.
T Consensus 72 D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 72 DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 66789999999998763
No 191
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.87 E-value=0.0032 Score=61.44 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=45.4
Q ss_pred cCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEEEEE
Q psy84 222 SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLK 282 (2182)
Q Consensus 222 ~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL~lk 282 (2182)
.+.| .+|..|.++|||.. | |++||+|+.|||+.|..| +++.++|.+. +..++|++.
T Consensus 6 ~~~G-v~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~ 63 (79)
T cd00986 6 TYHG-VYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVK 63 (79)
T ss_pred EecC-EEEEEECCCCchhh-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEE
Confidence 3456 58999999999985 5 999999999999999854 5788888753 456788875
No 192
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.87 E-value=0.0022 Score=63.09 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=45.5
Q ss_pred ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEEEEEe
Q psy84 226 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 283 (2182)
Q Consensus 226 ~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL~lkk 283 (2182)
..+|..|.++|||++.| |++||.|++|||+.|..|. ++.++|... +..+.|++.+
T Consensus 25 g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r 81 (90)
T cd00987 25 GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLR 81 (90)
T ss_pred EEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEE
Confidence 46999999999999874 9999999999999998764 577777665 6678888853
No 193
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.87 E-value=0.012 Score=61.86 Aligned_cols=91 Identities=16% Similarity=0.126 Sum_probs=70.1
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecC----CCCcceEEEEcCCcEEEeccccCC------CcceEEEEeC
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK----DSTKAHLFIYLPGFTVAPAVEVKS------RKYALKIYHT 781 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk----~dkkpkGsI~L~g~tV~~~~d~ks------Rk~aFkL~~~ 781 (2182)
++|-|.+.+...+ .=+.|+|-|=++.|.|=|.. ..-.-+|.|+|..+.|...++... -+++|+|++.
T Consensus 4 ~~Gel~~~s~~~g---~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~ 80 (109)
T cd01224 4 LQGEATRQKQNKG---WNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSE 80 (109)
T ss_pred EeeeEEEEecccC---CcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEc
Confidence 6888888874321 22468888888888887742 234567889999999988755432 3799999998
Q ss_pred C--eEEEEEcCCHHHHHHHHHHHHHh
Q psy84 782 G--TTFYLSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 782 ~--rtyyFaAdSeeEme~WI~AL~~A 805 (2182)
. +.|.|+|.|.++...||+||...
T Consensus 81 ~~~~~~~f~~Kt~e~K~~Wm~a~~~e 106 (109)
T cd01224 81 STDEWYLFSFKSAERKHRWLSAFALE 106 (109)
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHh
Confidence 6 78999999999999999999653
No 194
>KOG3543|consensus
Probab=96.87 E-value=0.00021 Score=89.15 Aligned_cols=96 Identities=19% Similarity=0.412 Sum_probs=76.5
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCC-----eEEEEecCCCCcceEEEEcCCcEEEecc---ccCCCcceEEEEeCC
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGN-----HFYGFTDKDSTKAHLFIYLPGFTVAPAV---EVKSRKYALKIYHTG 782 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~-----~LyYYKdk~dkkpkGsI~L~g~tV~~~~---d~ksRk~aFkL~~~~ 782 (2182)
-.+|||+--|.+. ++.||||||||-.- .++-|+.+ ...|...|.|+|++|...+ ...+.++-|..+..+
T Consensus 465 khsgylyaig~nv--wkrwkkrffvlvqvsqytfamcsyrek-kaepqel~qldgytvdytdp~pglqgg~~ffnavkeg 541 (1218)
T KOG3543|consen 465 KHSGYLYAIGRNV--WKRWKKRFFVLVQVSQYTFAMCSYREK-KAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEG 541 (1218)
T ss_pred ccceeehhhhhHH--HHHhHhhEEEEEEhhhhhhHhhhhhhc-ccChHHHhhccCeeeccCCCCCccccchHHHHHhccC
Confidence 3689999988774 48999999999743 34455554 4478889999999998753 334456778888888
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy84 783 TTFYLSADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 783 rtyyFaAdSeeEme~WI~AL~~As~~~ 809 (2182)
.+..|+.+++.|+.-|++|+-+|+-..
T Consensus 542 dtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 542 DTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred ceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 999999999999999999999998743
No 195
>KOG4384|consensus
Probab=96.86 E-value=0.0011 Score=80.17 Aligned_cols=67 Identities=27% Similarity=0.573 Sum_probs=60.0
Q ss_pred CHHHHHHHHhhccchhhhhHHhHhhcccC-chhhcCCChhhhhccCCcchhHHHHHHHHHHHHHhhhccc
Q psy84 10 KPDQVADWLKGLDVSIHRYVESFLNNHVN-GQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFHYEL 78 (2182)
Q Consensus 10 s~~qV~~WL~GLd~~l~~Y~~~F~~~~I~-G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~l~y~l 78 (2182)
-+.-|++||+.+ .|++|...|..|+-+ =+.+-+++..||++|||..-+||.+||.||+.|+....+.
T Consensus 214 ~~~~~~ewL~~i--~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e~d~~~ 281 (361)
T KOG4384|consen 214 HPKSLEEWLRRI--GLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKEIDSGS 281 (361)
T ss_pred CchHHHHHHHHh--hHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 356799999999 599999999999988 6778899999999999999999999999999999776543
No 196
>KOG3553|consensus
Probab=96.77 E-value=0.0014 Score=66.95 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=50.1
Q ss_pred CcceEEEecCC------------cceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc
Q psy84 1355 HLGFCIIPSFH------------GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES 1414 (2182)
Q Consensus 1355 ~LG~~I~s~~~------------G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~ 1414 (2182)
.+||.|-++.+ -.++|+++.+||||+..| |+.+|.|+||||-...=.+|+..++.|+..
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~ 106 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE 106 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh
Confidence 47898876522 246999999999999887 999999999999999889999999988763
No 197
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.73 E-value=0.0045 Score=60.80 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=45.5
Q ss_pred eEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEEEEEe
Q psy84 227 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 283 (2182)
Q Consensus 227 h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL~lkk 283 (2182)
.+|.+|.++|||+.. .|++||+|++|||+.|..| .++.++|... +..+.|++.+
T Consensus 12 v~V~~V~~~spa~~a-GL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r 67 (79)
T cd00991 12 VVIVGVIVGSPAENA-VLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLP 67 (79)
T ss_pred EEEEEECCCChHHhc-CCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEE
Confidence 589999999999976 5999999999999999855 6788888875 5667777753
No 198
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.71 E-value=0.0043 Score=60.89 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=45.1
Q ss_pred eEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEe
Q psy84 1368 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 1424 (2182)
Q Consensus 1368 h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKk 1424 (2182)
.+|.+|.++|||+..| |++||+|++|||+.|..| .++...|... +..+.|++++
T Consensus 12 v~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r 67 (79)
T cd00991 12 VVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLP 67 (79)
T ss_pred EEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEE
Confidence 5899999999997765 999999999999999855 6788888875 4567777764
No 199
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.68 E-value=0.0036 Score=61.64 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=45.1
Q ss_pred ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEe
Q psy84 1367 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 1424 (2182)
Q Consensus 1367 ~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKk 1424 (2182)
..+|..|.++|||++.| |.+||.|++|||+.|..|. ++.+.|... +..+.|++.+
T Consensus 25 g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~--~~~~~l~~~~~~~~i~l~v~r 81 (90)
T cd00987 25 GVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVLR 81 (90)
T ss_pred EEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEE
Confidence 46899999999998776 9999999999999998764 577777765 5667777753
No 200
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=96.61 E-value=0.0051 Score=59.98 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=46.0
Q ss_pred ecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEe
Q psy84 1362 PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 1424 (2182)
Q Consensus 1362 s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKk 1424 (2182)
..+.| .+|..|.++|||.. | |++||+|+.|||+.|..| .++..+|.+. +..++|++++
T Consensus 5 ~~~~G-v~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r 64 (79)
T cd00986 5 YTYHG-VYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKR 64 (79)
T ss_pred EEecC-EEEEEECCCCchhh-C-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEE
Confidence 34456 48999999999975 6 999999999999999754 5788888763 4567777763
No 201
>KOG4384|consensus
Probab=96.61 E-value=0.0016 Score=78.89 Aligned_cols=68 Identities=26% Similarity=0.538 Sum_probs=60.3
Q ss_pred CCchhhhhhhcccchhHHHhHHHHhhccCC-chhhhCCChhhhhccCCcccchHHHHHHHHHHHHhhhccc
Q psy84 1150 WKPDQVADWLKGLDVSIHRYVESFLNNHVN-GQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFHYEL 1219 (2182)
Q Consensus 1150 Ws~dQVv~WLkGLd~~l~~Y~~~F~~~~I~-G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~~~y~l 1219 (2182)
-.+.-|.+||+.+. |++|.+.|..|+-+ =+.+-+|+.+||++|||...+||.+||.||+.|+....+.
T Consensus 213 ~~~~~~~ewL~~i~--le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e~d~~~ 281 (361)
T KOG4384|consen 213 PHPKSLEEWLRRIG--LEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKEIDSGS 281 (361)
T ss_pred CCchHHHHHHHHhh--HHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 34677889999885 88999999999988 6788899999999999999999999999999999875543
No 202
>KOG3543|consensus
Probab=96.61 E-value=0.00042 Score=86.61 Aligned_cols=93 Identities=19% Similarity=0.420 Sum_probs=75.4
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCe-----EEEEecCCCCccceeEecCCcEEEec---ccccCcceeEEEEcCCe
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNH-----FYGFTDKDSTKAHLFIYLPGFTVAPA---VEVKSRKYALKIYHTGT 1929 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~-----LyYYKde~d~kp~GsI~L~g~tVs~a---~e~ksRk~aFkI~~~~r 1929 (2182)
+.||||--|. ...|.||||||||-.-. ++-|+.+ ...|...|.|.||+|+-. +...+.++.|...-.+.
T Consensus 466 hsgylyaig~--nvwkrwkkrffvlvqvsqytfamcsyrek-kaepqel~qldgytvdytdp~pglqgg~~ffnavkegd 542 (1218)
T KOG3543|consen 466 HSGYLYAIGR--NVWKRWKKRFFVLVQVSQYTFAMCSYREK-KAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGD 542 (1218)
T ss_pred cceeehhhhh--HHHHHhHhhEEEEEEhhhhhhHhhhhhhc-ccChHHHhhccCeeeccCCCCCccccchHHHHHhccCc
Confidence 7899999887 46789999999997443 4455543 457888999999999864 33445677788888889
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhh
Q psy84 1930 TFYLSADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1930 tyyFsAdSeeEm~~WI~AL~~As~ 1953 (2182)
+..|+.++++++.-|++|+-+|+-
T Consensus 543 tvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 543 TVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred eEEeccCchhhhhHHHHHHHHhhC
Confidence 999999999999999999999874
No 203
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.60 E-value=0.0015 Score=67.80 Aligned_cols=97 Identities=12% Similarity=0.192 Sum_probs=71.2
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCC-cEEEecccccCcceeEEEEcCC-eEEEE
Q psy84 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAVEVKSRKYALKIYHTG-TTFYL 1933 (2182)
Q Consensus 1856 ~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g-~tVs~a~e~ksRk~aFkI~~~~-rtyyF 1933 (2182)
+..+||+.|.|+ .....|++|||-|-.+.|-+|....+ .....|.+.. -.|++.........|..|...+ +.|++
T Consensus 3 cIvhGyi~KLGG--PFls~WQ~Ry~~LfPNRLE~~~~~~~-~~~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vl 79 (116)
T cd01240 3 CIVHGYIKKLGG--PFLSQWQTRYFKLYPNRLELYGESEA-NKPELITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVL 79 (116)
T ss_pred eEEeeehhhhCC--HHHHHHHHHHheeCcceeeecccccc-cCCcEEEeehhhhcchhheeeccCceEEEEEcCCceEEE
Confidence 357999999997 46789999999999999999755444 2333455555 2233221222256788888776 89999
Q ss_pred EcCCHHHHHHHHHHHHHHhhhc
Q psy84 1934 SADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1934 sAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
.++++-++.+|...|+.|-...
T Consensus 80 t~~d~i~l~qW~~elr~a~r~S 101 (116)
T cd01240 80 TNSDEIELKQWKKELRDAHRES 101 (116)
T ss_pred ecCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876543
No 204
>KOG1451|consensus
Probab=96.45 E-value=0.0045 Score=78.12 Aligned_cols=106 Identities=11% Similarity=0.218 Sum_probs=75.5
Q ss_pred CcccCCCCceEEEEEeecCCCCCCCCceEEEEEEeCCe--EEEE--ecC--CCCccceeEecCCcEEEecccccCcceeE
Q psy84 1849 SVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNH--FYGF--TDK--DSTKAHLFIYLPGFTVAPAVEVKSRKYAL 1922 (2182)
Q Consensus 1849 s~~~Lg~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~--LyYY--Kde--~d~kp~GsI~L~g~tVs~a~e~ksRk~aF 1922 (2182)
.++..+.+.++||||.+.++. ..+.|-|+||+-.... +..- ..+ ........+.|..|+-..- +...++|||
T Consensus 258 e~k~p~p~t~eGYlY~QEK~~-~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRkt-dSIdKRFCF 335 (812)
T KOG1451|consen 258 EDKRPTPSTKEGYLYMQEKSK-IGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKT-DSIDKRFCF 335 (812)
T ss_pred cccCCCCcccceeeeehhhhh-ccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcc-cccccceee
Confidence 355667778999999999764 6689999999987443 2221 111 1122334566777644444 455689999
Q ss_pred EEEcCC--eEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy84 1923 KIYHTG--TTFYLSADSQDEFSSWLGCLSQATIAHD 1956 (2182)
Q Consensus 1923 kI~~~~--rtyyFsAdSeeEm~~WI~AL~~As~~~~ 1956 (2182)
.|.... .+..+.|=+++++..||+|+..+--.+.
T Consensus 336 Dve~~erpgviTmQALSE~drrlWmeAMDG~ep~Y~ 371 (812)
T KOG1451|consen 336 DVEVEERPGVITMQALSEKDRRLWMEAMDGAEPSYT 371 (812)
T ss_pred eeeecccCCeeehHhhhhhHHHHHHHHhcCCCcccc
Confidence 999887 6899999999999999999987644443
No 205
>KOG1451|consensus
Probab=96.44 E-value=0.005 Score=77.76 Aligned_cols=98 Identities=10% Similarity=0.221 Sum_probs=71.8
Q ss_pred CcCCCCCCeeEEEEeecCCCCCCCCceeEEEEEeCCe--EE--EEec--CCCCcceEEEEcCCcEEEeccccCCCcceEE
Q psy84 704 VKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNH--FY--GFTD--KDSTKAHLFIYLPGFTVAPAVEVKSRKYALK 777 (2182)
Q Consensus 704 v~~lg~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~--Ly--YYKd--k~dkkpkGsI~L~g~tV~~~~d~ksRk~aFk 777 (2182)
+.-+++..++||||.+..... .+.|-|+||+-...+ +. -+.. .....+...+.|..|+=+ -.+...++|||.
T Consensus 259 ~k~p~p~t~eGYlY~QEK~~~-g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RR-ktdSIdKRFCFD 336 (812)
T KOG1451|consen 259 DKRPTPSTKEGYLYMQEKSKI-GKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRR-KTDSIDKRFCFD 336 (812)
T ss_pred ccCCCCcccceeeeehhhhhc-cchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccC-cccccccceeee
Confidence 344566789999999887654 579999999987432 22 2222 223344456788888633 345556899999
Q ss_pred EEeCC--eEEEEEcCCHHHHHHHHHHHH
Q psy84 778 IYHTG--TTFYLSADSQDEFSSWLGCLS 803 (2182)
Q Consensus 778 L~~~~--rtyyFaAdSeeEme~WI~AL~ 803 (2182)
|...+ .+..++|-|++++..||+|+.
T Consensus 337 ve~~erpgviTmQALSE~drrlWmeAMD 364 (812)
T KOG1451|consen 337 VEVEERPGVITMQALSEKDRRLWMEAMD 364 (812)
T ss_pred eeecccCCeeehHhhhhhHHHHHHHHhc
Confidence 99887 699999999999999999983
No 206
>KOG0196|consensus
Probab=96.42 E-value=0.0047 Score=80.87 Aligned_cols=94 Identities=23% Similarity=0.382 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCc--------------cccCCcCC-CCchhhhhhhcccchhHHHhHHHHhhccCCc-hhh
Q psy84 1120 GIKKFFTSVYELFIKYSLNPFY--------------KINTPINN-WKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHL 1183 (2182)
Q Consensus 1120 ~Ir~fF~~VhelYvd~vmNPFy--------------~~~~PI~s-Ws~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G-~~L 1183 (2182)
.-|--|.+|....=|++.||-. .++....+ -.+.-|.+||+.+. |.+|.++|..++++- +.+
T Consensus 876 ~~RP~F~qiV~~lDklIrnP~SLk~~~~~~~r~s~~lld~~~~~~~~f~sv~~WL~aIk--m~rY~~~F~~ag~~s~~~V 953 (996)
T KOG0196|consen 876 NRRPKFAQIVSTLDKLIRNPNSLKTIAPESPRPSQPLLDRSGSDFTPFRSVGDWLEAIK--MGRYKEHFAAAGYTSFEDV 953 (996)
T ss_pred hcCCCHHHHHHHHHHHhcCchhhcccCCCCCCCcccccCCCCCCCcccCCHHHHHHHhh--hhHHHHHHHhcCcccHHHH
Confidence 3456677777777788888842 11223333 33677889999885 789999999988865 567
Q ss_pred hCCChhhhhccCCcccchHHHHHHHHHHHHhh
Q psy84 1184 LNLQPDDLEHHGICKVGHQEIILEAVDHLRNF 1215 (2182)
Q Consensus 1184 L~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~~ 1215 (2182)
.+|+.+||..|||+-.|||++||-.|+.+|.-
T Consensus 954 ~q~s~eDl~~~Gitl~GhqkkIl~SIq~m~~q 985 (996)
T KOG0196|consen 954 AQMSAEDLLRLGITLAGHQKKILSSIQAMRAQ 985 (996)
T ss_pred HhhhHHHHHhhceeecchhHHHHHHHHHHHHH
Confidence 89999999999999999999999999998863
No 207
>KOG3723|consensus
Probab=96.37 E-value=0.0013 Score=82.40 Aligned_cols=102 Identities=22% Similarity=0.343 Sum_probs=75.9
Q ss_pred CCCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC-CcceEEEEcCCcE-EEec---cccCCCcceEEEEeCC
Q psy84 708 VMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS-TKAHLFIYLPGFT-VAPA---VEVKSRKYALKIYHTG 782 (2182)
Q Consensus 708 g~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d-kkpkGsI~L~g~t-V~~~---~d~ksRk~aFkL~~~~ 782 (2182)
|.+..+|-|.-+.+...+++.|+-|||.|.+-.|.|-|.... ..-...|+|...+ |..+ ...++-+-+|+|.+.+
T Consensus 733 gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD 812 (851)
T KOG3723|consen 733 GQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD 812 (851)
T ss_pred CCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhheeecC
Confidence 444679999766666556799999999999999999877422 1223668887733 2211 1122335699999999
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy84 783 TTFYLSADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 783 rtyyFaAdSeeEme~WI~AL~~As~~~ 809 (2182)
.+|.|.|.++...++|+..|+-|....
T Consensus 813 ~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 813 KTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred ceEEeecccccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999887743
No 208
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.31 E-value=0.031 Score=58.86 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=76.1
Q ss_pred ccCCCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCC---CCccceeEecCCcEEEecccccCcceeEEEEcC
Q psy84 1851 KDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD---STKAHLFIYLPGFTVAPAVEVKSRKYALKIYHT 1927 (2182)
Q Consensus 1851 ~~Lg~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~---d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~ 1927 (2182)
+.+|.+.+-+=..-+.. ...-=..|||||-.++|++..... .-.-.|-++|.+.+|...++....+++|.|..+
T Consensus 7 ~~lG~vi~mS~V~~~~~---~~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~ 83 (111)
T cd01225 7 KTLGNVIHMSQVAVQYG---AGEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGP 83 (111)
T ss_pred hhcCceEEEEEEEEecC---CccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhccCccceEEEecc
Confidence 45666666665555432 122346789999999999988742 234688999999989887666678999999988
Q ss_pred C-eEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1928 G-TTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1928 ~-rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
- ....+.|.+++|+++||..|++-+
T Consensus 84 li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 84 LIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred CcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 7 788999999999999999998743
No 209
>KOG1117|consensus
Probab=96.31 E-value=0.0079 Score=78.57 Aligned_cols=95 Identities=17% Similarity=0.337 Sum_probs=75.3
Q ss_pred eEEEEEeecCCCC-------CCCCceEEEEEEeCCeEEEEecCCCCccceeEecCC--cEEEeccccc---CcceeEEEE
Q psy84 1858 CEGWLFQRDRKIS-------TVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG--FTVAPAVEVK---SRKYALKIY 1925 (2182)
Q Consensus 1858 keGWL~KKg~k~s-------~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g--~tVs~a~e~k---sRk~aFkI~ 1925 (2182)
+.|+||+...... ...--.|+||||-|+.|+||.++.+.+|.|.|.+.. |.+..-++.- .-.|.|+|+
T Consensus 494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~ 573 (1186)
T KOG1117|consen 494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIY 573 (1186)
T ss_pred ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCceeeccceEEEeecCCCCCCCcCceeEEEEe
Confidence 6799998765211 123467999999999999999999999999999988 3333322222 347889999
Q ss_pred cCC-eEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1926 HTG-TTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1926 ~~~-rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
.++ +.|.|.+++.+++..|..++-+.-
T Consensus 574 l~~er~~~fgle~ad~l~~wt~aiaKhf 601 (1186)
T KOG1117|consen 574 LPGERVFLFGLETADALRKWTEAIAKHF 601 (1186)
T ss_pred ecccceEEeecccHHHHHHHHHHHHHhc
Confidence 988 999999999999999999987754
No 210
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.27 E-value=0.0032 Score=65.52 Aligned_cols=96 Identities=13% Similarity=0.218 Sum_probs=70.7
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcE-EEeccccCCCcceEEEEeCC-eEEEE
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFT-VAPAVEVKSRKYALKIYHTG-TTFYL 787 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~t-V~~~~d~ksRk~aFkL~~~~-rtyyF 787 (2182)
+...||+.|.|+.+ ...|++|||-|-.+-|=+|....+ .....|.+.... |...........|..|...+ +.|++
T Consensus 3 cIvhGyi~KLGGPF--ls~WQ~Ry~~LfPNRLE~~~~~~~-~~~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vl 79 (116)
T cd01240 3 CIVHGYIKKLGGPF--LSQWQTRYFKLYPNRLELYGESEA-NKPELITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVL 79 (116)
T ss_pred eEEeeehhhhCCHH--HHHHHHHHheeCcceeeecccccc-cCCcEEEeehhhhcchhheeeccCceEEEEEcCCceEEE
Confidence 34799999999763 589999999999999999755443 333445555522 22221112356788888876 99999
Q ss_pred EcCCHHHHHHHHHHHHHhhhh
Q psy84 788 SADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 788 aAdSeeEme~WI~AL~~As~~ 808 (2182)
.++++-+..+|...|+.|-..
T Consensus 80 t~~d~i~l~qW~~elr~a~r~ 100 (116)
T cd01240 80 TNSDEIELKQWKKELRDAHRE 100 (116)
T ss_pred ecCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999887663
No 211
>KOG0606|consensus
Probab=96.26 E-value=0.0092 Score=80.55 Aligned_cols=88 Identities=25% Similarity=0.388 Sum_probs=69.1
Q ss_pred eEeecCCCCCcceEEEec--CCc-------ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCC
Q psy84 1346 ATLKKRPGEHLGFCIIPS--FHG-------IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSS 1416 (2182)
Q Consensus 1346 V~L~K~~~e~LG~~I~s~--~~G-------~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~ 1416 (2182)
+++.+ .+.+|||+++.- |-| .|.|..|.+||||..- .+.+||-|..|||..|+|..|-+|+++|...++
T Consensus 630 I~i~~-~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~a-gls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 630 ITIHF-SGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEA-GLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred eeeec-cccccCceeeeEEEecCCcccceeeeeeeeecCCCCcccc-CCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 44443 466899997654 223 4789999999999544 599999999999999999999999999999889
Q ss_pred cEEEEEEeCCCCCcccccc
Q psy84 1417 DIFLTLKKRPCHSKILGQI 1435 (2182)
Q Consensus 1417 ~vtL~LKkrP~~~~~~~q~ 1435 (2182)
.|++.+-.--..+..+++.
T Consensus 708 ~v~~~ttplenTSik~g~a 726 (1205)
T KOG0606|consen 708 KVTLRTTPLENTSIKSGPA 726 (1205)
T ss_pred eeEEEeeccccchhhhhHH
Confidence 8888775444555555554
No 212
>KOG0248|consensus
Probab=96.23 E-value=0.0022 Score=81.93 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=76.0
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCC--CCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEE
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD--STKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYL 787 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~--dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyF 787 (2182)
.++.||+.+.+.. .+.|+|||||++.+...||+.+. ...+.+.|++..-.+..-. +-.++|.+.....+|+|
T Consensus 249 ~ekSgy~~~~~s~---~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~---~~s~~fqli~~t~~~~~ 322 (936)
T KOG0248|consen 249 MEKSGYWTQLTSR---IKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ---GAAYAFQLITSTDKMNF 322 (936)
T ss_pred hhcccchhcchHH---HHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc---chhHHhhhhhhceeEEE
Confidence 4578999998855 46999999999999999998864 4678888888774333222 24578999888899999
Q ss_pred EcCCHHHHHHHHHHHHHhhhhc
Q psy84 788 SADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 788 aAdSeeEme~WI~AL~~As~~~ 809 (2182)
-++|+--..+|++.|..++-..
T Consensus 323 ~~~s~~lt~dw~~iL~~~iKv~ 344 (936)
T KOG0248|consen 323 MTESERTTHDWVTILSAAIKAT 344 (936)
T ss_pred eccChhhhhhhHHHHHHHHHHH
Confidence 9999999999999998887754
No 213
>KOG1117|consensus
Probab=96.22 E-value=0.01 Score=77.58 Aligned_cols=98 Identities=16% Similarity=0.340 Sum_probs=78.0
Q ss_pred CCeeEEEEeecCCCC-------CCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEE--Eecccc---CCCcceEE
Q psy84 710 PDCEGWLFQRDRKIS-------TVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTV--APAVEV---KSRKYALK 777 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~-------~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV--~~~~d~---ksRk~aFk 777 (2182)
...+|+||....... ...-..++||||-|+.|+||.+..+..|.|.|.+....+ ...++. ..-.|.|+
T Consensus 492 ~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE 571 (1186)
T KOG1117|consen 492 TFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIFIFE 571 (1186)
T ss_pred ccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCceeeccceEEEeecCCCCCCCcCceeEEE
Confidence 347899998765542 124567899999999999999999999999999988432 222222 23578999
Q ss_pred EEeCC-eEEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 778 IYHTG-TTFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 778 L~~~~-rtyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
|+.++ +.|.|.+++.+++..|..++-++-.
T Consensus 572 ~~l~~er~~~fgle~ad~l~~wt~aiaKhfv 602 (1186)
T KOG1117|consen 572 IYLPGERVFLFGLETADALRKWTEAIAKHFV 602 (1186)
T ss_pred EeecccceEEeecccHHHHHHHHHHHHHhcC
Confidence 99998 9999999999999999999977655
No 214
>KOG3542|consensus
Probab=96.21 E-value=0.0053 Score=77.91 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=69.6
Q ss_pred ccceeeEeecCC-CCCcceEEEecC-Cc-ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCc
Q psy84 1341 SSLDLATLKKRP-GEHLGFCIIPSF-HG-IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSD 1417 (2182)
Q Consensus 1341 a~le~V~L~K~~-~e~LG~~I~s~~-~G-~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~ 1417 (2182)
|--+.|.|.|.. +++|-|.+.++. .| .+||..|.+|+-|.+.| |.-||+|++||||+....+.+..+.+|++. ..
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn-th 611 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN-TH 611 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC-ce
Confidence 556789999744 569999998872 23 45999999999998887 899999999999999999999999999875 67
Q ss_pred EEEEEEe
Q psy84 1418 IFLTLKK 1424 (2182)
Q Consensus 1418 vtL~LKk 1424 (2182)
++|+||-
T Consensus 612 LtltvKt 618 (1283)
T KOG3542|consen 612 LTLTVKT 618 (1283)
T ss_pred EEEEEec
Confidence 8999984
No 215
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.21 E-value=0.025 Score=57.64 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=66.2
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEEEcCC
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADS 791 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyFaAdS 791 (2182)
+.|.+.|+.+- .+|+|=++|++.--.+|=|......+|.|++....+.+ +.. ....|.|.+++|+|+|. |.
T Consensus 3 ~~g~v~Kr~gl-----f~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~~~l~v--~~~-~~~~F~I~Tp~rty~le-D~ 73 (89)
T cd01262 3 KIGAVKKRKGL-----FAKKRQLILTNGPRLIYVDPVKKVVKGEIPWSDVELRV--EVK-NSSHFFVHTPNKVYSFE-DP 73 (89)
T ss_pred eeeeeeehhcc-----ccceeeEEEecCceEEEEcCCcCeEEeEecccccceEE--EEe-cCccEEEECCCceEEEE-CC
Confidence 67888888753 58999999998876677777788999999999822222 111 23469999999999994 66
Q ss_pred HHHHHHHHHHHHHh
Q psy84 792 QDEFSSWLGCLSQA 805 (2182)
Q Consensus 792 eeEme~WI~AL~~A 805 (2182)
+.....|+.+|..+
T Consensus 74 ~~~a~~W~~~I~~~ 87 (89)
T cd01262 74 KGRASQWKKAIEDL 87 (89)
T ss_pred CCCHHHHHHHHHHH
Confidence 78999999999875
No 216
>KOG3678|consensus
Probab=96.20 E-value=0.0049 Score=76.12 Aligned_cols=87 Identities=29% Similarity=0.565 Sum_probs=74.4
Q ss_pred ccccCCcCCCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCChhhhh-ccCCcccchHHHHHHHHHHHHhh-hc-
Q psy84 1141 YKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLE-HHGICKVGHQEIILEAVDHLRNF-HY- 1217 (2182)
Q Consensus 1141 y~~~~PI~sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~-~LGV~~iGHre~ILeaV~~Lr~~-~y- 1217 (2182)
|.+...|-.|+-.+|.-|++.+. ..+|++.|.+..++|.-||+|+..||+ ++|+.+-=||++.|+.+..|+.+ +|
T Consensus 456 ~~l~~qVPgWt~AdVQ~WvkkIG--FeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv~AdYS 533 (832)
T KOG3678|consen 456 YKLAQQVPGWTCADVQYWVKKIG--FEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAADYS 533 (832)
T ss_pred hhhhccCCCcchHHHHHHHHHhC--HHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhccc
Confidence 45566788999999999999875 669999999999999999999999986 69999999999999999999876 44
Q ss_pred ccCchhHHHHHH
Q psy84 1218 ELDHENLQLLAL 1229 (2182)
Q Consensus 1218 ~l~~ENLq~La~ 1229 (2182)
.++..||...-.
T Consensus 534 s~DeSNLdn~L~ 545 (832)
T KOG3678|consen 534 SVDESNLDNFLM 545 (832)
T ss_pred ccchhhHHHHHh
Confidence 366778765444
No 217
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.17 E-value=0.021 Score=60.11 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=65.4
Q ss_pred CceeEEEEEeCCeEEEEecCC---CCcceEEEEcCCcEEEeccccCCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHH
Q psy84 728 QWIRGWFIIKGNHFYGFTDKD---STKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLS 803 (2182)
Q Consensus 728 ~WKKRWFVLkd~~LyYYKdk~---dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-rtyyFaAdSeeEme~WI~AL~ 803 (2182)
.=..||++|=.++|++..... .-.-.|-++|.+.+|...++....+++|+|.-+. ....+.|.+.+|+++||..|+
T Consensus 27 e~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~ 106 (111)
T cd01225 27 EKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLN 106 (111)
T ss_pred ccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHH
Confidence 456899999999999988732 2345678999999998877666789999999887 888999999999999999998
Q ss_pred Hh
Q psy84 804 QA 805 (2182)
Q Consensus 804 ~A 805 (2182)
+-
T Consensus 107 ~~ 108 (111)
T cd01225 107 AN 108 (111)
T ss_pred hh
Confidence 73
No 218
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.16 E-value=0.032 Score=58.05 Aligned_cols=93 Identities=18% Similarity=0.129 Sum_probs=66.9
Q ss_pred eEEEEEeecCCCCCCCCceEE-EEEEeCCeEEEEec-CCCCccceeEecCCcEEEecccccCcceeEEEEcCCeEEEEEc
Q psy84 1858 CEGWLFQRDRKISTVPQWIRG-WFIIKGNHFYGFTD-KDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSA 1935 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKR-WFVLkd~~LyYYKd-e~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyFsA 1935 (2182)
++|=|..-+.. ..+.=++. .|.+.|..++-... +........++|.+..|.-.++...-+++|+|.++.+++.|+|
T Consensus 4 ~~G~l~e~~~~--~~kp~~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~~s~i~qa 81 (100)
T cd01226 4 LYGELEEFDVE--TKKPVQRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFPESRIYQC 81 (100)
T ss_pred EcCcEEEechh--hCCccceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCcCceEEEEeCCccEEEEe
Confidence 45666555541 22333455 44444444444332 3344567799999987877766666799999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy84 1936 DSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1936 dSeeEm~~WI~AL~~As 1952 (2182)
+|+++..+||+.|+.|.
T Consensus 82 es~~~K~eWl~~le~a~ 98 (100)
T cd01226 82 ESARIKTEWFEELEQAK 98 (100)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999986
No 219
>KOG3542|consensus
Probab=96.12 E-value=0.0066 Score=77.09 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=67.9
Q ss_pred ccceEEEeeeC-CCCCcceEEEecC-Cc-ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCc
Q psy84 200 SSLDLATLKKR-PGEHLGFCIIPSF-HG-IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSD 276 (2182)
Q Consensus 200 a~l~~V~L~K~-~~e~LG~~I~~~~-~g-~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~ 276 (2182)
|--++|.|.|. .+.+|-|.+.++. .| .+||..|.+|+-|.+.| |.-||+|++||||+....+.+..+++|+. ...
T Consensus 534 AK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrn-nth 611 (1283)
T KOG3542|consen 534 AKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRN-NTH 611 (1283)
T ss_pred ccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcC-Cce
Confidence 44578999873 3669999998772 23 45999999999999885 89999999999999999999999999986 567
Q ss_pred EEEEEE
Q psy84 277 IFLTLK 282 (2182)
Q Consensus 277 VtL~lk 282 (2182)
++|+||
T Consensus 612 LtltvK 617 (1283)
T KOG3542|consen 612 LTLTVK 617 (1283)
T ss_pred EEEEEe
Confidence 888885
No 220
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.07 E-value=0.037 Score=57.62 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=66.5
Q ss_pred eeEEEEeecCCCCCCCCceeE-EEEEeCCeEEEEec-CCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEEEc
Q psy84 712 CEGWLFQRDRKISTVPQWIRG-WFIIKGNHFYGFTD-KDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSA 789 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKR-WFVLkd~~LyYYKd-k~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyFaA 789 (2182)
++|=|..-+.... +-=++. .|.+.|..++-... +..-....+++|.+..|....+...-+++|.|.++.+++.++|
T Consensus 4 ~~G~l~e~~~~~~--kp~~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~~s~i~qa 81 (100)
T cd01226 4 LYGELEEFDVETK--KPVQRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFPESRIYQC 81 (100)
T ss_pred EcCcEEEechhhC--CccceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCcCceEEEEeCCccEEEEe
Confidence 4555555443321 222344 56666655555332 3334556679999988877766666799999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy84 790 DSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 790 dSeeEme~WI~AL~~As 806 (2182)
+|+++..+||+.|++|.
T Consensus 82 es~~~K~eWl~~le~a~ 98 (100)
T cd01226 82 ESARIKTEWFEELEQAK 98 (100)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999986
No 221
>KOG1899|consensus
Probab=96.05 E-value=0.006 Score=77.41 Aligned_cols=66 Identities=23% Similarity=0.476 Sum_probs=59.5
Q ss_pred cCCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhh-hccCCcchhHHHHHHHHHHHHH
Q psy84 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDL-EHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL-~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
|...|+.+|||+||..+ +|.+|+..-.+|--.|..||+.+.+|+ ++|||.--=||+.|.=||+.|-
T Consensus 546 pfa~W~~EqvcnWlae~--Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeLnIKhplHRKkl~lal~ai~ 612 (861)
T KOG1899|consen 546 PFADWRSEQVCNWLAEI--GLGQYMNEVRRWVRSGRTFLTASPQDYEKELNIKHPLHRKKLALALRAIE 612 (861)
T ss_pred chhhccHHHHHHHHHHh--chHHHHHHHHHHHhcCchhhcCCHHHHHHHhccCCchHHHHHHHHHHHhc
Confidence 67899999999999977 599999999999999999999999997 5799999999999887776654
No 222
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.04 E-value=0.051 Score=58.27 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=63.6
Q ss_pred eEEEEeecCCCC--CCCCceeEEEEEeC--CeEEEEecCC-CCc----ceEEEEcCCcEEEecc--cc-C----CCcceE
Q psy84 713 EGWLFQRDRKIS--TVPQWIRGWFIIKG--NHFYGFTDKD-STK----AHLFIYLPGFTVAPAV--EV-K----SRKYAL 776 (2182)
Q Consensus 713 eGWL~Kkg~~~~--~~k~WKKRWFVLkd--~~LyYYKdk~-dkk----pkGsI~L~g~tV~~~~--d~-k----sRk~aF 776 (2182)
-.||+|..+.++ ..+..++|||-|.. .+|+|...+. ... ....|.|.+....... .. . ...++|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 468999877652 12579999999985 5788877532 111 1234666663322111 11 1 135788
Q ss_pred EEEeCCeEEEEEcCCHHHHHHHHHHHHHh
Q psy84 777 KIYHTGTTFYLSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 777 kL~~~~rtyyFaAdSeeEme~WI~AL~~A 805 (2182)
.|.+++|+..|.|.|.++.+-|+++|+--
T Consensus 92 ~i~t~~R~L~l~a~s~~~~~~W~~aL~~L 120 (123)
T PF12814_consen 92 IIVTPDRSLDLTAPSRERHEIWFNALRYL 120 (123)
T ss_pred EEEcCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence 88888899999999999999999999753
No 223
>KOG0196|consensus
Probab=95.92 E-value=0.0063 Score=79.77 Aligned_cols=60 Identities=30% Similarity=0.579 Sum_probs=54.3
Q ss_pred HHHHHHhhccchhhhhHHhHhhcccCc-hhhcCCChhhhhccCCcchhHHHHHHHHHHHHHhh
Q psy84 13 QVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNF 74 (2182)
Q Consensus 13 qV~~WL~GLd~~l~~Y~~~F~~~~I~G-~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~l 74 (2182)
-|.+||+.+ .|.+|.+.|..++++- +.+++++.+||..|||+-.|||++||..|+.++..
T Consensus 925 sv~~WL~aI--km~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~m~~q 985 (996)
T KOG0196|consen 925 SVGDWLEAI--KMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQAMRAQ 985 (996)
T ss_pred CHHHHHHHh--hhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHHHHHH
Confidence 488999999 5999999999998876 55779999999999999999999999999999854
No 224
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.90 E-value=0.024 Score=57.74 Aligned_cols=70 Identities=29% Similarity=0.337 Sum_probs=48.2
Q ss_pred CcceEEEecCCcceEEeccCCC--------ChhhhcC-cccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEEe
Q psy84 1355 HLGFCIIPSFHGIHQIGDIKCN--------STAYQSG-KIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 1424 (2182)
Q Consensus 1355 ~LG~~I~s~~~G~h~Is~I~~g--------SPAd~~g-~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LKk 1424 (2182)
-||..+.-. +|...|++|..| ||...-| .|++||.|+.|||+.|.. -.++..+|... +..|.|+|+.
T Consensus 2 ~LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~agk~V~Ltv~~ 78 (88)
T PF14685_consen 2 LLGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKAGKQVLLTVNR 78 (88)
T ss_dssp B-SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTTTSEEEEEEE-
T ss_pred ccceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccCCCEEEEEEec
Confidence 488888877 577799999987 6666666 889999999999999963 34577778775 6789999987
Q ss_pred CCC
Q psy84 1425 RPC 1427 (2182)
Q Consensus 1425 rP~ 1427 (2182)
.+.
T Consensus 79 ~~~ 81 (88)
T PF14685_consen 79 KPG 81 (88)
T ss_dssp STT
T ss_pred CCC
Confidence 775
No 225
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=95.84 E-value=0.074 Score=57.08 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=64.1
Q ss_pred EEEEEeecCCC--CCCCCceEEEEEEeC--CeEEEEecCC-CCc----cceeEecCCcEEEec--cccc-----CcceeE
Q psy84 1859 EGWLFQRDRKI--STVPQWIRGWFIIKG--NHFYGFTDKD-STK----AHLFIYLPGFTVAPA--VEVK-----SRKYAL 1922 (2182)
Q Consensus 1859 eGWL~KKg~k~--s~~K~WKKRWFVLkd--~~LyYYKde~-d~k----p~GsI~L~g~tVs~a--~e~k-----sRk~aF 1922 (2182)
-.||+|-..++ ++.....+|||.|.. .+|+|+..+. ... -.+.|.|.+...... .... ...++|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 46999966532 123589999999986 5688887542 111 224577776322221 1111 135788
Q ss_pred EEEcCCeEEEEEcCCHHHHHHHHHHHHHHh
Q psy84 1923 KIYHTGTTFYLSADSQDEFSSWLGCLSQAT 1952 (2182)
Q Consensus 1923 kI~~~~rtyyFsAdSeeEm~~WI~AL~~As 1952 (2182)
.|.+++|+.-|.|++.++.+-|+++|+.-+
T Consensus 92 ~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 92 IIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred EEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 888999999999999999999999998654
No 226
>KOG3723|consensus
Probab=95.77 E-value=0.0033 Score=78.93 Aligned_cols=105 Identities=22% Similarity=0.334 Sum_probs=77.6
Q ss_pred ccCCCCceEEEEE-eecCCCCCCCCceEEEEEEeCCeEEEEecCCC-CccceeEecCCc-EEEecc---cccCcceeEEE
Q psy84 1851 KDLVMPDCEGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS-TKAHLFIYLPGF-TVAPAV---EVKSRKYALKI 1924 (2182)
Q Consensus 1851 ~~Lg~~dkeGWL~-KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d-~kp~GsI~L~g~-tVs~a~---e~ksRk~aFkI 1924 (2182)
..-|.+..+|-|. |||+|+ ..|.|+-|||.|.+..|.|-+.... ..-...|+|... .|..+. ..++-+-+|+|
T Consensus 730 n~~gqp~iEGQLKEKKGrWR-f~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEI 808 (851)
T KOG3723|consen 730 NQDGQPLIEGQLKEKKGRWR-FIKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEI 808 (851)
T ss_pred cCCCCchhcchhhhhccchh-hhhhhccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhhe
Confidence 3345556789885 555564 7899999999999999999876632 222367888872 232121 11223568999
Q ss_pred EcCCeEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy84 1925 YHTGTTFYLSADSQDEFSSWLGCLSQATIAHD 1956 (2182)
Q Consensus 1925 ~~~~rtyyFsAdSeeEm~~WI~AL~~As~~~~ 1956 (2182)
-+.+++|.+.|.++...++|++.|+-|...+.
T Consensus 809 FTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 809 FTADKTYILKAKDEKNAEEWLQCLNIAVAHAK 840 (851)
T ss_pred eecCceEEeecccccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887654
No 227
>KOG0606|consensus
Probab=95.72 E-value=0.016 Score=78.49 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=63.8
Q ss_pred EEeeeCCCCCcceEEEec--C-------CcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCC
Q psy84 205 ATLKKRPGEHLGFCIIPS--F-------HGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSS 275 (2182)
Q Consensus 205 V~L~K~~~e~LG~~I~~~--~-------~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~ 275 (2182)
+++.+ .+.+|||+++.- + .-.|.|..|.+||||... .+.+||-|..|||..|.|..|-+|+++|-..++
T Consensus 630 I~i~~-~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~a-gls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 630 ITIHF-SGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEA-GLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred eeeec-cccccCceeeeEEEecCCcccceeeeeeeeecCCCCcccc-CCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 34444 466999986633 2 225789999999999865 699999999999999999999999999999999
Q ss_pred cEEEEEE
Q psy84 276 DIFLTLK 282 (2182)
Q Consensus 276 ~VtL~lk 282 (2182)
.|++.+.
T Consensus 708 ~v~~~tt 714 (1205)
T KOG0606|consen 708 KVTLRTT 714 (1205)
T ss_pred eeEEEee
Confidence 9999983
No 228
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.57 E-value=0.023 Score=73.51 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=59.3
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcce-----------------EEE--EcCCc-EEEec---c
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH-----------------LFI--YLPGF-TVAPA---V 767 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpk-----------------GsI--~L~g~-tV~~~---~ 767 (2182)
...|.+.+.++. ..||+||+++.+..+-.+....+..++ -+| ++... .|-++ .
T Consensus 374 ~~~g~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (496)
T PTZ00283 374 LYEGIVKKQSSD----LSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKY 449 (496)
T ss_pred eeeeEEecccCC----cccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHh
Confidence 368999987655 359999999974322222111111111 122 22221 11122 1
Q ss_pred ccCCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 768 EVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 768 d~ksRk~aFkL~~~~-rtyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
...+.+|+|.|...+ +.+.|.|.++++++.||.+|+++.-
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 450 TGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred hCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 223469999999876 9999999999999999999999876
No 229
>KOG4374|consensus
Probab=95.50 E-value=0.0059 Score=70.17 Aligned_cols=61 Identities=31% Similarity=0.349 Sum_probs=57.7
Q ss_pred HHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 11 PDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 11 ~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
.++|--||..| ++..|-..|+.++|+=+.|..|+.+||+++||..+|-|..|+.||..++.
T Consensus 151 ~~~vl~~L~~l--glg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~ 211 (216)
T KOG4374|consen 151 TEGVLMELGIL--GLGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRR 211 (216)
T ss_pred cchHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhcccc
Confidence 57899999988 59999999999999999999999999999999999999999999998863
No 230
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.43 E-value=0.041 Score=56.08 Aligned_cols=71 Identities=28% Similarity=0.315 Sum_probs=46.3
Q ss_pred CcceEEEecCCcceEEeccCCC--------ChhhhcC-CcCCCCeEEEECCeEecCCCHHHHHHHHHhC-CCcEEEEEEe
Q psy84 214 HLGFCIIPSFHGIHQIGDIKCN--------STAYQSG-KIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 283 (2182)
Q Consensus 214 ~LG~~I~~~~~g~h~VsrI~~g--------sPAd~sg-~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s-~~~VtL~lkk 283 (2182)
-||..+.-. +|...|++|-.| ||-..-| .|++||.|+.|||+.|..- .++-.+|... +..|.|+|..
T Consensus 2 ~LGAd~~~~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~ 78 (88)
T PF14685_consen 2 LLGADFSYD-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNR 78 (88)
T ss_dssp B-SEEEEEE-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-
T ss_pred ccceEEEEc-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEec
Confidence 578888877 577799999887 6666666 8899999999999999632 3466666554 6689999977
Q ss_pred cCCC
Q psy84 284 RPCH 287 (2182)
Q Consensus 284 rP~~ 287 (2182)
.+.+
T Consensus 79 ~~~~ 82 (88)
T PF14685_consen 79 KPGG 82 (88)
T ss_dssp STT-
T ss_pred CCCC
Confidence 6653
No 231
>KOG4424|consensus
Probab=95.39 E-value=0.013 Score=74.66 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=80.6
Q ss_pred CcccCCCCceEEEEEeecCCCCCCCCceEEEEEEe---CCeEEEEecCCCCccceeEecCCcEEEec--ccccCcceeEE
Q psy84 1849 SVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIK---GNHFYGFTDKDSTKAHLFIYLPGFTVAPA--VEVKSRKYALK 1923 (2182)
Q Consensus 1849 s~~~Lg~~dkeGWL~KKg~k~s~~K~WKKRWFVLk---d~~LyYYKde~d~kp~GsI~L~g~tVs~a--~e~ksRk~aFk 1923 (2182)
.+.+-+.....++|.+-.. ..+.|+.-|++.- ..++|.|....+-.+...|+|.||.|.+- .......+.|+
T Consensus 490 ~a~~s~~~~~~s~l~~~~~---~~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k 566 (623)
T KOG4424|consen 490 LATVSKENVICSHLKYMEA---AGKTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFK 566 (623)
T ss_pred ccccCCCceehhhHHHHhh---cCccceeeeeeccCCCCccccccCCccccccccccccCccccCCCcccccchhcchhh
Confidence 3333333345566655442 2368999999884 55899999999999999999999988753 23333467788
Q ss_pred EEcCCeEEEEEcCCHHHHHHHHHHHHHHhhhcC
Q psy84 1924 IYHTGTTFYLSADSQDEFSSWLGCLSQATIAHD 1956 (2182)
Q Consensus 1924 I~~~~rtyyFsAdSeeEm~~WI~AL~~As~~~~ 1956 (2182)
+......|||+|+|++-.++|++.|..|+....
T Consensus 567 ~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~~d~ 599 (623)
T KOG4424|consen 567 LVQSHLSWHLAADDEQLQQRWLEVLLLAVSGDL 599 (623)
T ss_pred hhhhcceeeeccCCHHHHHHHHHHHHhhhcccc
Confidence 888888999999999999999999999997754
No 232
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.37 E-value=0.029 Score=72.57 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=59.6
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccc-----------------eeE--ecCC----cEEEecc
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH-----------------LFI--YLPG----FTVAPAV 1913 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~-----------------GsI--~L~g----~tVs~a~ 1913 (2182)
..+|.+.++++. ..||+||+++.+..+-.+....+..+. -+| ++.. |-|-..-
T Consensus 374 ~~~g~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (496)
T PTZ00283 374 LYEGIVKKQSSD----LSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKY 449 (496)
T ss_pred eeeeEEecccCC----cccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHh
Confidence 368999887652 359999999974322222111111100 122 2222 2222222
Q ss_pred cccCcceeEEEEcCC-eEEEEEcCCHHHHHHHHHHHHHHhh
Q psy84 1914 EVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1914 e~ksRk~aFkI~~~~-rtyyFsAdSeeEm~~WI~AL~~As~ 1953 (2182)
...+.+|+|.+...+ +.|.|.|.+++++..||.+|+++.-
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 450 TGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred hCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 333479999999765 9999999999999999999999874
No 233
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=95.19 E-value=0.034 Score=70.78 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=45.1
Q ss_pred ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHh--CCCcEEEEEEe
Q psy84 226 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEE--SSSDIFLTLKK 283 (2182)
Q Consensus 226 ~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~--s~~~VtL~lkk 283 (2182)
.++|..|.++|||+..| |++||.|++|||+.|..| .++..+|.. .+..|+|++.+
T Consensus 258 Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R 314 (428)
T TIGR02037 258 GALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILR 314 (428)
T ss_pred ceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 35999999999999886 999999999999999865 456666655 35678888864
No 234
>KOG1737|consensus
Probab=95.15 E-value=0.011 Score=78.91 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=73.0
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecC--CCCccceeEecCCcEEEecccccCcceeEEEEcCC-eEEEE
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK--DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYL 1933 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde--~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~-rtyyF 1933 (2182)
..+|||+|.. +..++|.+|||+|.++.|.||++. ....+.|.|++....|...+... +.+.+.+ ..|+.
T Consensus 78 ~~~g~l~k~~---n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~~~-----~~~~~~~~q~~~~ 149 (799)
T KOG1737|consen 78 SLEGILLKWR---NYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGERMD-----ICSVDGSCQIYLV 149 (799)
T ss_pred cccceeeccc---cccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCCcc-----cchhhcccchhhh
Confidence 4699999954 477999999999998899999887 55678999998776555443322 4444444 78899
Q ss_pred EcCCHHHHHHHHHHHHHHhhhcCC
Q psy84 1934 SADSQDEFSSWLGCLSQATIAHDR 1957 (2182)
Q Consensus 1934 sAdSeeEm~~WI~AL~~As~~~~~ 1957 (2182)
.+-+..+.+.|+.++..|.....+
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~ 173 (799)
T KOG1737|consen 150 ELSKKLQRQGWLHALELAPLIAVE 173 (799)
T ss_pred hhhHHHhhcchhhhhhhccchhhh
Confidence 999999999999999999666554
No 235
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=94.90 E-value=0.045 Score=69.64 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=44.7
Q ss_pred eEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEe
Q psy84 1368 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 1424 (2182)
Q Consensus 1368 h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKk 1424 (2182)
++|..|.++|||+..| |++||+|++|||+.|..| .++..+|... +..++|++.+
T Consensus 259 v~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R 314 (428)
T TIGR02037 259 ALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILR 314 (428)
T ss_pred eEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 5899999999998887 999999999999999865 4566677653 5677888765
No 236
>KOG4374|consensus
Probab=94.89 E-value=0.011 Score=68.14 Aligned_cols=89 Identities=28% Similarity=0.274 Sum_probs=70.5
Q ss_pred HHHHHHH--HHHHHHHhhc-CCCccccCCcCCCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCc
Q psy84 1121 IKKFFTS--VYELFIKYSL-NPFYKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGIC 1197 (2182)
Q Consensus 1121 Ir~fF~~--VhelYvd~vm-NPFy~~~~PI~sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~ 1197 (2182)
+..+|.+ .++.|++... |+- .-+.---.+++|..||..|. +-.|-..|+.++|+=+.|..|+.++|+++||.
T Consensus 120 ~~~~~~~~~~l~s~~~~~~~~~~---~l~~~~t~~~~vl~~L~~lg--lg~y~~~f~~~evd~~~l~~lte~dlk~~gi~ 194 (216)
T KOG4374|consen 120 IQSLLTSRLGLESYIKEFNLQEI---DLQTFGTLTEGVLMELGILG--LGAYWKMFEAIEVDMDNLRLLTEEDLKDMGIN 194 (216)
T ss_pred hhhHHHHhhcccccchhhhcchH---hhhhcccccchHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhcccchhhhhccc
Confidence 5556654 7778887543 432 11122234789999999885 55999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHh
Q psy84 1198 KVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1198 ~iGHre~ILeaV~~Lr~ 1214 (2182)
.+|-|..|+.|+..++.
T Consensus 195 ~~GpRkKi~~A~~~~r~ 211 (216)
T KOG4374|consen 195 SVGPRKKILCAIGKLRR 211 (216)
T ss_pred ccCcchhhhhhhhcccc
Confidence 99999999999998864
No 237
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=94.76 E-value=0.03 Score=54.74 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=36.9
Q ss_pred cCCCCCHHHHHHHHh---hccchhhhhHHhHhhcccCchhhcCCChhhhhccCC
Q psy84 5 NVADWKPDQVADWLK---GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGI 55 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~---GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV 55 (2182)
+...||.++|+.|.. +++++ ......|.+|+|+|.-|..|+-+|=|+|-=
T Consensus 2 ~~~~Wsv~eVv~WC~~~L~l~~~-d~l~~~l~en~I~Gd~L~eLtl~DCKeLc~ 54 (75)
T PF09235_consen 2 DFSNWSVDEVVSWCISSLELDDE-DPLCNNLRENDITGDVLPELTLEDCKELCD 54 (75)
T ss_dssp -TTT--HHHHHHHHHHHHSS-TT-SCHHHHHHHTT--CCCHHHHHHHHHHHCTT
T ss_pred ccccccHHHHHHHHHHhcCCCCC-CHHHHHHHHccCccchhhhccHHHHHHHcC
Confidence 467899999999998 66654 556778999999999999999999888743
No 238
>PRK10942 serine endoprotease; Provisional
Probab=94.62 E-value=0.054 Score=69.99 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=48.5
Q ss_pred ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEEe
Q psy84 226 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 283 (2182)
Q Consensus 226 ~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lkk 283 (2182)
..+|..|.++|||++.| |++||.|++|||+.|..| +++.++|++.+..+.|+|++
T Consensus 409 gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R 463 (473)
T PRK10942 409 GVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQR 463 (473)
T ss_pred CeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEE
Confidence 36999999999999875 999999999999999875 78999998888888888854
No 239
>PF15408 PH_7: Pleckstrin homology domain
Probab=94.61 E-value=0.013 Score=58.57 Aligned_cols=91 Identities=16% Similarity=0.337 Sum_probs=63.0
Q ss_pred EEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEe-------c-ccccCcceeEEEEcCC-e
Q psy84 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP-------A-VEVKSRKYALKIYHTG-T 1929 (2182)
Q Consensus 1859 eGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~-------a-~e~ksRk~aFkI~~~~-r 1929 (2182)
+||||.-..+ .-+|||.||++..|.+|.++.. .-+.++.|....+.. + +...-..|.|-.+.++ +
T Consensus 1 EGYLY~~E~~-----si~rRF~~L~~K~~~~~~~KGG-~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~ 74 (104)
T PF15408_consen 1 EGYLYRDEDS-----SIQRRFVMLRSKQFNMYEDKGG-QYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRR 74 (104)
T ss_pred CCeEEEeccc-----hHHHHHHhhhhceeEEecccCC-ceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcc
Confidence 6999997762 5789999999999999988743 234444454422221 1 1212235567777776 6
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy84 1930 TFYLSADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1930 tyyFsAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
..-+-|++.+.|+.||++|+.-+..-
T Consensus 75 ~~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 75 HVQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhhHHHHHHHHHHHhcChhhhh
Confidence 66778999999999999998765543
No 240
>PF15408 PH_7: Pleckstrin homology domain
Probab=94.58 E-value=0.02 Score=57.32 Aligned_cols=89 Identities=16% Similarity=0.340 Sum_probs=59.9
Q ss_pred eEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEe--------ccccCCCcceEEEEeCC-e
Q psy84 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--------AVEVKSRKYALKIYHTG-T 783 (2182)
Q Consensus 713 eGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~--------~~d~ksRk~aFkL~~~~-r 783 (2182)
+|||+....+ .-+|||.+|++..|.+|.++... ...++.|....+.. +....--.|.|-.+.++ +
T Consensus 1 EGYLY~~E~~-----si~rRF~~L~~K~~~~~~~KGG~-~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~ 74 (104)
T PF15408_consen 1 EGYLYRDEDS-----SIQRRFVMLRSKQFNMYEDKGGQ-YLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRR 74 (104)
T ss_pred CCeEEEeccc-----hHHHHHHhhhhceeEEecccCCc-eeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcc
Confidence 6999998755 57899999999999999987542 23344444422221 11111123345555555 6
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 784 TFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 784 tyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
..-+-|+|.+.|+.||++|+.-+.
T Consensus 75 ~~~~FA~S~~~~~~Wi~~mN~~s~ 98 (104)
T PF15408_consen 75 HVQCFASSKKVCQSWIQVMNSPSF 98 (104)
T ss_pred hhhhhhhHHHHHHHHHHHhcChhh
Confidence 677889999999999999976443
No 241
>PRK10942 serine endoprotease; Provisional
Probab=94.56 E-value=0.056 Score=69.89 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=48.3
Q ss_pred ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEe
Q psy84 1367 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 1424 (2182)
Q Consensus 1367 ~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKk 1424 (2182)
..+|..|.++|||++.| |++||.|++|||+.|..| +++.++|++.+..+.|++++
T Consensus 409 gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R 463 (473)
T PRK10942 409 GVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQR 463 (473)
T ss_pred CeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEE
Confidence 36899999999998876 999999999999999875 78999998877778888864
No 242
>KOG1899|consensus
Probab=94.50 E-value=0.032 Score=71.19 Aligned_cols=69 Identities=23% Similarity=0.415 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHhhhc
Q psy84 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFHY 76 (2182)
Q Consensus 6 V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~l~y 76 (2182)
-..|....|..||.-+ +|-||.+.|.++-|+|.-|..||-+||-+|.|.+.=|--.|-.||.-|+..++
T Consensus 620 a~klDv~wvlRWLDDI--GLPQYKdqF~E~rVDgrmL~ylTvnDll~lkVvs~lHhaSlkraIqvLr~n~f 688 (861)
T KOG1899|consen 620 ANKLDVHWVLRWLDDI--GLPQYKDQFAENRVDGRMLHYLTVNDLLELKVVSALHHASLKRAIQVLRKNDF 688 (861)
T ss_pred ccchhHHHHHHHHHhc--CChhhHHHHhhhccchhhHhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4679999999999955 69999999999999999999999999999999999999999999999997665
No 243
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.48 E-value=0.42 Score=49.77 Aligned_cols=91 Identities=10% Similarity=0.089 Sum_probs=64.2
Q ss_pred CCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCC-CCccceeEecCCcEEEecccccCcceeEEEEcCC---e
Q psy84 1854 VMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD-STKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG---T 1929 (2182)
Q Consensus 1854 g~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~-d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~---r 1929 (2182)
|.-.++|-|.-.+. =+-|+.-|=+..|.|-|... .-..+..|.+.+..|....+ +.+++|.|.+.+ .
T Consensus 2 geLlleg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~--~d~~~F~v~~~~~p~~ 72 (97)
T cd01222 2 GDLLLEGRFREHGG-------GKPRLLFLFQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLP--GEPLCFRVIPFDDPKG 72 (97)
T ss_pred CceeeeceEEeecC-------CCceEEEEecccEEEEEecCCeeEEEEEEEecceEEecCCC--CCCcEEEEEecCCCce
Confidence 33457888875443 22476666666666665543 33456678888866654322 247999998764 6
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHhh
Q psy84 1930 TFYLSADSQDEFSSWLGCLSQATI 1953 (2182)
Q Consensus 1930 tyyFsAdSeeEm~~WI~AL~~As~ 1953 (2182)
.|.|+|.|.++.+.||++|+.++.
T Consensus 73 ~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 73 ALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999864
No 244
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=94.48 E-value=0.046 Score=51.61 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=49.8
Q ss_pred HHHHHhhccchhhhhHHhHhh-cccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 14 VADWLKGLDVSIHRYVESFLN-NHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 14 V~~WL~GLd~~l~~Y~~~F~~-~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
|..+|..++-++.+|.+.|.. | +.|+.++..+|+++|| .+-+|.-||..++.+|
T Consensus 1 V~tFL~~IGR~~~~~~~kf~~~w----~~lf~~~s~~LK~~GI-p~r~RryiL~~~ek~r 55 (57)
T PF09597_consen 1 VETFLKLIGRGCEEHAEKFESDW----EKLFTTSSKQLKELGI-PVRQRRYILRWREKYR 55 (57)
T ss_pred CHHHHHHHcccHHHHHHHHHHHH----HHHHhcCHHHHHHCCC-CHHHHHHHHHHHHHHh
Confidence 567899888889999999988 6 8999999999999999 9999999999999887
No 245
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.47 E-value=0.44 Score=49.58 Aligned_cols=88 Identities=10% Similarity=0.126 Sum_probs=63.1
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC-CcceEEEEcCCcEEEeccccCCCcceEEEEeCC---eEEE
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS-TKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG---TTFY 786 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d-kkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~---rtyy 786 (2182)
.++|.|...+. =+.|+.-|=+..|.|-|...+ -.-+..|.+.+..|....+ +.+++|.|.+.+ ..|.
T Consensus 5 lleg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~--~d~~~F~v~~~~~p~~~~~ 75 (97)
T cd01222 5 LLEGRFREHGG-------GKPRLLFLFQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLP--GEPLCFRVIPFDDPKGALQ 75 (97)
T ss_pred eeeceEEeecC-------CCceEEEEecccEEEEEecCCeeEEEEEEEecceEEecCCC--CCCcEEEEEecCCCceEEE
Confidence 46888875442 235776666666666665433 3445568888876654322 247999998774 6999
Q ss_pred EEcCCHHHHHHHHHHHHHhhh
Q psy84 787 LSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 787 FaAdSeeEme~WI~AL~~As~ 807 (2182)
|.|.|.++.+.||++|+.|+.
T Consensus 76 l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 76 LTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred EEecCHHHHHHHHHHHHHHhh
Confidence 999999999999999999864
No 246
>PRK10139 serine endoprotease; Provisional
Probab=94.11 E-value=0.083 Score=68.05 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=47.2
Q ss_pred ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEEe
Q psy84 226 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 283 (2182)
Q Consensus 226 ~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lkk 283 (2182)
..+|..|.++|||++.| |++||.|++|||+.|..| +++.++|++.+..++|++.+
T Consensus 391 Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R 445 (455)
T PRK10139 391 GIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVR 445 (455)
T ss_pred ceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEE
Confidence 35899999999999874 999999999999999755 67889998877888888843
No 247
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=93.93 E-value=0.11 Score=65.67 Aligned_cols=68 Identities=25% Similarity=0.476 Sum_probs=51.2
Q ss_pred CCCCcceEEEecCCcceEEec--c-----CCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEE
Q psy84 1352 PGEHLGFCIIPSFHGIHQIGD--I-----KCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLK 1423 (2182)
Q Consensus 1352 ~~e~LG~~I~s~~~G~h~Is~--I-----~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LK 1423 (2182)
.+.++|..+++. |..+|.. | ..+|||...| |++||.|++|||+.|..| +++.++|++. +..++|+++
T Consensus 94 gG~~iGI~l~t~--GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~ 168 (402)
T TIGR02860 94 GGQSIGVKLNTK--GVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIE 168 (402)
T ss_pred CCEEEEEEEecC--EEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEE
Confidence 355788888765 6666543 2 2469997665 999999999999999766 6788888876 466788886
Q ss_pred e
Q psy84 1424 K 1424 (2182)
Q Consensus 1424 k 1424 (2182)
+
T Consensus 169 R 169 (402)
T TIGR02860 169 R 169 (402)
T ss_pred E
Confidence 3
No 248
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=93.79 E-value=0.099 Score=66.67 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=45.5
Q ss_pred eEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC-CCcEEEEEEe
Q psy84 227 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 283 (2182)
Q Consensus 227 h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s-~~~VtL~lkk 283 (2182)
.+|..|.++|||+.. .|++||+|++|||+.|..| +++.+.|++. +..++|++++
T Consensus 205 ~vV~~V~~~SpA~~a-GL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R 259 (420)
T TIGR00054 205 PVLSDVTPNSPAEKA-GLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVER 259 (420)
T ss_pred cEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEE
Confidence 589999999999976 5999999999999999765 6888899875 4567888853
No 249
>PRK10139 serine endoprotease; Provisional
Probab=93.78 E-value=0.1 Score=67.25 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=46.6
Q ss_pred ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEe
Q psy84 1367 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 1424 (2182)
Q Consensus 1367 ~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKk 1424 (2182)
..+|..|.++|||.+.| |++||.|++|||+.|..| .++.++|++.+..+.|++.+
T Consensus 391 Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~v~l~v~R 445 (455)
T PRK10139 391 GIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVR 445 (455)
T ss_pred ceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEE
Confidence 35899999999998876 999999999999999665 67889998877777777753
No 250
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.73 E-value=0.64 Score=50.52 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=55.0
Q ss_pred CeeEEEEeecCCCCC-----CCCceeEEEEEeCCeEEEEecCCCCcceE--EEEcCCcEEEeccccC----------CCc
Q psy84 711 DCEGWLFQRDRKIST-----VPQWIRGWFIIKGNHFYGFTDKDSTKAHL--FIYLPGFTVAPAVEVK----------SRK 773 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~-----~k~WKKRWFVLkd~~LyYYKdk~dkkpkG--sI~L~g~tV~~~~d~k----------sRk 773 (2182)
.+.|+|..-...+.. .-.-+-+|+.|=+++|.|=|.+.+..-.. ..+...+.|..++... ..+
T Consensus 4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~ 83 (125)
T cd01221 4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRP 83 (125)
T ss_pred EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCC
Confidence 367777765433210 11344678888777777776553221111 1223334444332110 357
Q ss_pred ceEEEEe----CC--eEEEEEcCCHHHHHHHHHHH
Q psy84 774 YALKIYH----TG--TTFYLSADSQDEFSSWLGCL 802 (2182)
Q Consensus 774 ~aFkL~~----~~--rtyyFaAdSeeEme~WI~AL 802 (2182)
+.|.|.. .+ ..+.|+|+|+.|+.+||.||
T Consensus 84 ~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al 118 (125)
T cd01221 84 NLFLLTLLRNADDKQAELLLSADSQSDRERWLSAL 118 (125)
T ss_pred ceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhc
Confidence 8999962 34 68999999999999999998
No 251
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=93.68 E-value=0.069 Score=50.47 Aligned_cols=55 Identities=24% Similarity=0.325 Sum_probs=48.5
Q ss_pred hhhhhcccchhHHHhHHHHhh-ccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1155 VADWLKGLDVSIHRYVESFLN-NHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1155 Vv~WLkGLd~~l~~Y~~~F~~-~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
|-.+|..+.-.+.+|.+.|+. | +.|+.++..+|+++|| .+-+|.-||..++..|.
T Consensus 1 V~tFL~~IGR~~~~~~~kf~~~w----~~lf~~~s~~LK~~GI-p~r~RryiL~~~ek~r~ 56 (57)
T PF09597_consen 1 VETFLKLIGRGCEEHAEKFESDW----EKLFTTSSKQLKELGI-PVRQRRYILRWREKYRQ 56 (57)
T ss_pred CHHHHHHHcccHHHHHHHHHHHH----HHHHhcCHHHHHHCCC-CHHHHHHHHHHHHHHhC
Confidence 456788776678899999988 7 8999999999999999 89999999999998874
No 252
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=93.65 E-value=0.11 Score=66.38 Aligned_cols=54 Identities=22% Similarity=0.425 Sum_probs=45.2
Q ss_pred eEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEEe
Q psy84 1368 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 1424 (2182)
Q Consensus 1368 h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LKk 1424 (2182)
.+|..|.++|||...| |++||+|++|||+.|..| +++.+.|++. +..++|++++
T Consensus 205 ~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R 259 (420)
T TIGR00054 205 PVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVER 259 (420)
T ss_pred cEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEE
Confidence 4899999999997766 999999999999999765 6898999875 4457777753
No 253
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=93.61 E-value=0.14 Score=65.80 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=49.3
Q ss_pred CcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEEe
Q psy84 1355 HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 1424 (2182)
Q Consensus 1355 ~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LKk 1424 (2182)
.+|+.-.+...+ .+|+.|.+||||.+.| |++||+|++|||+.|.. ..++.+.++.. +..+.|++.+
T Consensus 211 ~lGl~~~~~~~~-~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v~R 277 (449)
T PRK10779 211 SLGIRPRGPQIE-PVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIER 277 (449)
T ss_pred cccccccCCCcC-cEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEEEE
Confidence 466643322222 4899999999998876 99999999999999964 46788888775 3567777753
No 254
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=93.50 E-value=0.23 Score=51.69 Aligned_cols=78 Identities=19% Similarity=0.403 Sum_probs=56.3
Q ss_pred CCceeEEEEEe----CCeEEEEec--CCCCcceEEEEcCCc-EEEec--cccCCCcceEEEEeCC-eEEEEEcCCHHHHH
Q psy84 727 PQWIRGWFIIK----GNHFYGFTD--KDSTKAHLFIYLPGF-TVAPA--VEVKSRKYALKIYHTG-TTFYLSADSQDEFS 796 (2182)
Q Consensus 727 k~WKKRWFVLk----d~~LyYYKd--k~dkkpkGsI~L~g~-tV~~~--~d~ksRk~aFkL~~~~-rtyyFaAdSeeEme 796 (2182)
..|+|.=.+|. |..|.+|-- .++.+|+-.|+.... .|+.+ -+...+.|.|.|...+ ..|.|.|.++++|+
T Consensus 19 ~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~ 98 (107)
T cd01231 19 ARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLN 98 (107)
T ss_pred cccceeeEEEEecCCCceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHHH
Confidence 47999888886 345555554 677788777665541 12221 2333478999999887 89999999999999
Q ss_pred HHHHHHHH
Q psy84 797 SWLGCLSQ 804 (2182)
Q Consensus 797 ~WI~AL~~ 804 (2182)
.|+..|+.
T Consensus 99 SWla~Ir~ 106 (107)
T cd01231 99 SWLAELRY 106 (107)
T ss_pred HHHHHHhc
Confidence 99999974
No 255
>KOG1945|consensus
Probab=93.49 E-value=0.066 Score=65.44 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=63.2
Q ss_pred ccCCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 4 VNVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 4 ~~V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
-++..|+.+||..|+..++ +++|+..|..+.+.|.+|++++...++-||-++--.|.+....|+.+..
T Consensus 262 E~l~~~~k~q~~~~~~s~~--kei~a~e~a~q~~~~y~L~q~q~~~k~~L~~tk~~dralr~k~le~~~~ 329 (377)
T KOG1945|consen 262 ELLVTWKKQQVYHWLLSLN--KEIYAQEFAAQEQAGYQLLQLQGRKKKLLGRTKSHDRALRKKKLEEMSA 329 (377)
T ss_pred hhhhhhHHHHHHHHHHhhh--HHHHHHHHHHhhcccchhhccchHHHHHhhccccchHHHHHHHHHHHHH
Confidence 3688999999999999996 8899999999999999999999999999999999999999998888873
No 256
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=93.43 E-value=0.2 Score=62.61 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=44.7
Q ss_pred ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHh--CCCcEEEEEEe
Q psy84 226 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEE--SSSDIFLTLKK 283 (2182)
Q Consensus 226 ~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~--s~~~VtL~lkk 283 (2182)
..+|.+|.++|||+..| |++||.|++|||+.|..| .++.+.|.+ .+..|.|++.+
T Consensus 279 Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R 335 (351)
T TIGR02038 279 GIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLR 335 (351)
T ss_pred cceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 35899999999999874 999999999999999754 567777764 46678888854
No 257
>PF15406 PH_6: Pleckstrin homology domain
Probab=93.26 E-value=0.17 Score=53.22 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=45.3
Q ss_pred EEeCCe-EEEEecCCCCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHH
Q psy84 735 IIKGNH-FYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLS 803 (2182)
Q Consensus 735 VLkd~~-LyYYKdk~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyFaAdSeeEme~WI~AL~ 803 (2182)
.=+|.- |+|-|..+...|.|.|+|...+ ++..+. ..+|.|++ .|....|.|.|..|++.||.+|.
T Consensus 45 sqTGKGLLF~~K~~dka~P~GiinLadas-e~~~~g-~~kF~f~~--~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 45 SQTGKGLLFFSKAEDKASPSGIINLADAS-EPEKDG-SNKFHFKI--KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred hccCceEEEEeccccccCCcceEehhhcc-ccccCC-CceEEEEe--CCceeeeecCCHHHhccHHHHhh
Confidence 334444 4555544556899999998753 332332 24555555 78999999999999999999985
No 258
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=93.23 E-value=0.27 Score=54.06 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=59.7
Q ss_pred ccceeeEeecC----CCCCcceEEEecC-----CcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHH
Q psy84 1341 SSLDLATLKKR----PGEHLGFCIIPSF-----HGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALF 1411 (2182)
Q Consensus 1341 a~le~V~L~K~----~~e~LG~~I~s~~-----~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~L 1411 (2182)
..++.|.++.. ..+.||++|+-.. ....-|-+|.+||||+.+|..-..|-|+.+++..+. ..+++.+.+
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~~v 86 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFELV 86 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHHH
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecC--CHHHHHHHH
Confidence 45677777621 1357999998772 224468889999999999954457999999998888 467888888
Q ss_pred Hhc-CCcEEEEEEeCCCCCcccccccccCCC
Q psy84 1412 EES-SSDIFLTLKKRPCHSKILGQIYMKPYR 1441 (2182)
Q Consensus 1412 re~-~~~vtL~LKkrP~~~~~~~q~~~kp~r 1441 (2182)
.+. ...+.|.|-..- +.....|.|.|.+
T Consensus 87 ~~~~~~~l~L~Vyns~--~~~vR~V~i~P~~ 115 (138)
T PF04495_consen 87 EANENKPLQLYVYNSK--TDSVREVTITPSR 115 (138)
T ss_dssp HHTTTS-EEEEEEETT--TTCEEEEEE---T
T ss_pred HHcCCCcEEEEEEECC--CCeEEEEEEEcCC
Confidence 876 566666664332 3344556665543
No 259
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.20 E-value=0.68 Score=50.30 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=55.6
Q ss_pred ceEEEEEeecCCCCC-----CCCceEEEEEEeCCeEEEEecCCCCc--cceeEecCCcEEEeccccc----------Ccc
Q psy84 1857 DCEGWLFQRDRKIST-----VPQWIRGWFIIKGNHFYGFTDKDSTK--AHLFIYLPGFTVAPAVEVK----------SRK 1919 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~-----~K~WKKRWFVLkd~~LyYYKde~d~k--p~GsI~L~g~tVs~a~e~k----------sRk 1919 (2182)
.++|+|..-...+.. ...-+-+|+.|=+++|.|-|.+.+.. ..-..+.....|+.++... ..+
T Consensus 4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~ 83 (125)
T cd01221 4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRP 83 (125)
T ss_pred EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCC
Confidence 367777665432110 01234568888888888877653221 1111122334444332211 357
Q ss_pred eeEEEE----cCC--eEEEEEcCCHHHHHHHHHHHH
Q psy84 1920 YALKIY----HTG--TTFYLSADSQDEFSSWLGCLS 1949 (2182)
Q Consensus 1920 ~aFkI~----~~~--rtyyFsAdSeeEm~~WI~AL~ 1949 (2182)
+.|.|+ |.+ ..+.|+|+|+.|+.+||+||.
T Consensus 84 ~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 84 NLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 899996 233 789999999999999999984
No 260
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=93.17 E-value=0.11 Score=53.26 Aligned_cols=67 Identities=16% Similarity=0.310 Sum_probs=48.2
Q ss_pred cCCCCCHHHHHHHHhhc--cchhhhhHHhHhhc-ccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHhhh
Q psy84 5 NVADWKPDQVADWLKGL--DVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFH 75 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GL--d~~l~~Y~~~F~~~-~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~l~ 75 (2182)
....||.++|+.||.-. .-+|..- .|... +|+|++|-.|+.+|+-.+.=.-.| +++++-+++||.-+
T Consensus 16 DP~~Wt~~hV~~WL~Wa~~ef~L~~v--d~~~F~~m~Gk~LC~LskedF~~~~p~~~g--diLw~HL~~Lr~~~ 85 (91)
T cd08541 16 DPTLWTQEHVRQWLEWAIKEYGLMEI--DTSFFQNMDGKELCKMNKEDFLRATSLYNT--EVLLSHLSYLRESS 85 (91)
T ss_pred ChhhcCHHHHHHHHHHHHHHcCCCCC--ChhhccCCCHHHHHhCCHHHHHHHcCCCcc--HHHHHHHHHHHhCc
Confidence 34689999999999822 0012111 24444 799999999999998776544456 89999999999643
No 261
>KOG1737|consensus
Probab=93.17 E-value=0.055 Score=72.52 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=71.6
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCC--CCcceEEEEcCCcEEEeccccCCCcceEEEEeCC-eEEEE
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD--STKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYL 787 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~--dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-rtyyF 787 (2182)
..+|||+|....+ ++|.+|||+|.++.|.||++.. ...+.|.|++....|...... .+.+.+.+ ..|+.
T Consensus 78 ~~~g~l~k~~n~~---~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~~-----~~~~~~~~~q~~~~ 149 (799)
T KOG1737|consen 78 SLEGILLKWRNYS---KGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGERM-----DICSVDGSCQIYLV 149 (799)
T ss_pred cccceeecccccc---CCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCCc-----ccchhhcccchhhh
Confidence 3689999998774 5999999999999999998854 456777888877655433222 24444444 78889
Q ss_pred EcCCHHHHHHHHHHHHHhhhhccCC
Q psy84 788 SADSQDEFSSWLGCLSQATIAHDRS 812 (2182)
Q Consensus 788 aAdSeeEme~WI~AL~~As~~~~~~ 812 (2182)
.+-+..+.+.|+.+++.|.....+.
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (799)
T KOG1737|consen 150 ELSKKLQRQGWLHALELAPLIAVEQ 174 (799)
T ss_pred hhhHHHhhcchhhhhhhccchhhhc
Confidence 9999999999999999997765443
No 262
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=93.14 E-value=0.23 Score=62.07 Aligned_cols=54 Identities=24% Similarity=0.368 Sum_probs=43.9
Q ss_pred eEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEe
Q psy84 1368 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 1424 (2182)
Q Consensus 1368 h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKk 1424 (2182)
.+|..|.++|||+..| |++||+|++|||+.|..| .++.+.|.+. +..+.|++.+
T Consensus 280 v~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R 335 (351)
T TIGR02038 280 IVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLR 335 (351)
T ss_pred ceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 5899999999998876 999999999999999754 5677777653 5667777754
No 263
>PRK10898 serine endoprotease; Provisional
Probab=93.07 E-value=0.18 Score=63.02 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=43.1
Q ss_pred ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHh--CCCcEEEEEEe
Q psy84 226 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEE--SSSDIFLTLKK 283 (2182)
Q Consensus 226 ~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~--s~~~VtL~lkk 283 (2182)
..+|..|.++|||++. .|++||.|++|||+.|..| .++.+.|.. .+..|.|++.+
T Consensus 280 Gv~V~~V~~~spA~~a-GL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R 336 (353)
T PRK10898 280 GIVVNEVSPDGPAAKA-GIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMR 336 (353)
T ss_pred eEEEEEECCCChHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 3589999999999986 5999999999999999765 345555544 35668888754
No 264
>PRK10898 serine endoprotease; Provisional
Probab=92.99 E-value=0.18 Score=62.93 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=42.9
Q ss_pred ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHh--cCCcEEEEEEe
Q psy84 1367 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEE--SSSDIFLTLKK 1424 (2182)
Q Consensus 1367 ~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre--~~~~vtL~LKk 1424 (2182)
..+|..|.++|||++.| |++||+|++|||+.|..| .++.+.|.. .+..+.|++++
T Consensus 280 Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R 336 (353)
T PRK10898 280 GIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMR 336 (353)
T ss_pred eEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence 35899999999998876 999999999999999765 445556654 24567777763
No 265
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.99 E-value=0.31 Score=50.41 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=59.7
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecC-------CCCccceeEecCCcEEEecccccCcceeEEEEc-CCe
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK-------DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYH-TGT 1929 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde-------~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~-~~r 1929 (2182)
.+|+|.+-..+ .=|.|-|-|=++.|.|-+-. ......-.|+|.+..+... .|++.. +++
T Consensus 5 ~eg~lvel~~~-----~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------~~~~~~~~~K 71 (96)
T cd01228 5 KDSFLVELVEG-----SRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------PFRIHNKNGK 71 (96)
T ss_pred ccceeeeehhC-----CCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch--------hhhccccCCc
Confidence 68999998863 45677777777777766542 2234555899998655544 266654 569
Q ss_pred EEEEEcCCHHHHHHHHHHHHHH
Q psy84 1930 TFYLSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1930 tyyFsAdSeeEm~~WI~AL~~A 1951 (2182)
+|.|.|.|..|..+||.+|+.-
T Consensus 72 Sf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 72 SYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred eEEEEecCHHHHHHHHHHHHHH
Confidence 9999999999999999999763
No 266
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=92.97 E-value=0.06 Score=54.21 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=43.0
Q ss_pred cCCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
....||.+||.+||.-.-....-..-.|..-+|+|++|..|+.+++.++.=. +--.++.+-+++|+.
T Consensus 16 DP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~lt~e~F~~~~~~--~~G~~Ly~~L~~Lk~ 82 (84)
T PF02198_consen 16 DPRLWTKEDVLQWLRWVVREFDLPAIDFSRFNMNGRELCSLTKEDFRRRFPS--GYGDILYSHLQLLKK 82 (84)
T ss_dssp SGGG--HHHHHHHHHHHHHHTT-SSCHGGGGTS-HHHHHHSHHHHHHHHSTH--TTHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCcCchhccCCCHHHHHHcCHHHHHHHcCC--CcHHHHHHHHHHHHH
Confidence 4578999999999973211111011135666999999999999998775433 344577788888774
No 267
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.94 E-value=0.54 Score=50.42 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCC------ccceeEecCCcEEEecc--cc----cCccee
Q psy84 1854 VMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST------KAHLFIYLPGFTVAPAV--EV----KSRKYA 1921 (2182)
Q Consensus 1854 g~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~------kp~GsI~L~g~tVs~a~--e~----ksRk~a 1921 (2182)
|.+-..|.|.-+..- ...=+.||.-|-+..|..-|...+. .-+-.+.|..+.|.... +. +..+|+
T Consensus 2 GR~~~DGelk~k~~~---~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~ 78 (116)
T cd01223 2 GRPLLDGEVRIKASE---DQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYG 78 (116)
T ss_pred CccccCCceEEeEec---cCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEE
Confidence 344456777665531 1234578877777777777755332 33446777777777642 22 235789
Q ss_pred EEEEcCC--eEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy84 1922 LKIYHTG--TTFYLSADSQDEFSSWLGCLSQATIA 1954 (2182)
Q Consensus 1922 FkI~~~~--rtyyFsAdSeeEm~~WI~AL~~As~~ 1954 (2182)
|.|.+.. ..|.|+|.|+++...||++|..|...
T Consensus 79 f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 79 FYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 9999876 78999999999999999999998753
No 268
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=92.93 E-value=0.13 Score=51.18 Aligned_cols=64 Identities=23% Similarity=0.447 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHhhc--cchhhhhHHhHhhc-ccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 6 VADWKPDQVADWLKGL--DVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 6 V~~Ws~~qV~~WL~GL--d~~l~~Y~~~F~~~-~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
-..||.++|..||.-. .-+|.. + .+... +|+|++|-.|+.+|+..+-=...| +++++-+++||.
T Consensus 5 P~~Wt~~~V~~WL~Wa~~ef~L~~-~-~~~~F~~m~Gk~LC~LskedF~~~ap~~~G--diL~~HL~~Lr~ 71 (75)
T cd08540 5 PTLWSTDHVRQWLEWAVKEYGLPD-V-DVLLFQNIDGKELCKMTKDDFQRLTPSYNA--DILLSHLHYLRE 71 (75)
T ss_pred hhhcCHHHHHHHHHHHHHHhCCCC-C-CcccccCCCHHHHHhCCHHHHHHHcCCCCc--hHHHHHHHHHHh
Confidence 4689999999999821 001211 1 13344 699999999999998765333455 788888998884
No 269
>KOG4424|consensus
Probab=92.89 E-value=0.079 Score=68.00 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=77.4
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEe---CCeEEEEecCCCCcceEEEEcCCcEEEecccc--CCCcceEEEEeCCeE
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIK---GNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV--KSRKYALKIYHTGTT 784 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLk---d~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d~--ksRk~aFkL~~~~rt 784 (2182)
...+++|.+....+ ..|+.-|+++- ..++|.|...++-.....|+|.||.|.+.+.. ....+.|+++-....
T Consensus 497 ~~~~s~l~~~~~~~---~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~ 573 (623)
T KOG4424|consen 497 NVICSHLKYMEAAG---KTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLS 573 (623)
T ss_pred ceehhhHHHHhhcC---ccceeeeeeccCCCCccccccCCccccccccccccCccccCCCcccccchhcchhhhhhhcce
Confidence 34577776655332 58999999985 56899999999989999999999988754322 223567777766689
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhhhcc
Q psy84 785 FYLSADSQDEFSSWLGCLSQATIAHD 810 (2182)
Q Consensus 785 yyFaAdSeeEme~WI~AL~~As~~~~ 810 (2182)
+||+|++++-.++|++.|..|.....
T Consensus 574 ~~~~a~~~q~qq~wl~~l~~A~~~d~ 599 (623)
T KOG4424|consen 574 WHLAADDEQLQQRWLEVLLLAVSGDL 599 (623)
T ss_pred eeeccCCHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999988754
No 270
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=92.89 E-value=0.32 Score=58.59 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=43.3
Q ss_pred eEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEEEEEe
Q psy84 227 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 283 (2182)
Q Consensus 227 h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL~lkk 283 (2182)
..|..+.+++||++. +|+.||.|++|||+.|..| .++.+++.+. +..++|+|.+
T Consensus 193 ~~v~~v~~~s~a~~a-GLr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R 248 (259)
T TIGR01713 193 YRLNPGKDPSLFYKS-GLQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVER 248 (259)
T ss_pred EEEEecCCCCHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEE
Confidence 488889999999977 5999999999999999854 4566666653 4678888864
No 271
>KOG4403|consensus
Probab=92.87 E-value=0.087 Score=65.19 Aligned_cols=59 Identities=29% Similarity=0.577 Sum_probs=49.5
Q ss_pred cCCCCCHHHHHHHHhhccchhhhhHHhHhhcccCchhhcCCChhh----hhccCCcchhHHHHH
Q psy84 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDD----LEHHGICKVGHQEII 64 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~d----L~~LGV~~iGHre~I 64 (2182)
-|.+||.+++.+||-. +-.|-+|++.|..+.|+|+.|.+|--.. -+.|||..--||..|
T Consensus 131 ev~nWT~e~tvqWLi~-~VeLPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgikd~~hrQKl 193 (575)
T KOG4403|consen 131 EVHNWTNERTVQWLIN-DVELPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGIKDRSHRQKL 193 (575)
T ss_pred hhhcchHHHHHHHHHH-hcccHHHHHHHHhccCCcccccccccCchHHhhhhhccCchHHHHhh
Confidence 4789999999999984 3369999999999999999999885443 367899988888765
No 272
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.86 E-value=0.56 Score=50.27 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=66.2
Q ss_pred CCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCC------cceEEEEcCCcEEEecc--cc----CCCcceEE
Q psy84 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST------KAHLFIYLPGFTVAPAV--EV----KSRKYALK 777 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk------kpkGsI~L~g~tV~~~~--d~----ksRk~aFk 777 (2182)
+...|.|..+.... ..=+.||.-|=+..|.+=|...+. .-+..+.|..+.|.... +. +.-.|+|.
T Consensus 4 ~~~DGelk~k~~~~---~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~ 80 (116)
T cd01223 4 PLLDGEVRIKASED---QKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFY 80 (116)
T ss_pred cccCCceEEeEecc---CCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEE
Confidence 33567776666432 234578877777777777754432 23345777777776542 22 23578999
Q ss_pred EEeCC--eEEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 778 IYHTG--TTFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 778 L~~~~--rtyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
|.+.. ..|.|.|.|+++...||++|..|..
T Consensus 81 L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 81 LAHKQGKTGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred EEecCCCccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 99976 7899999999999999999998865
No 273
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=92.83 E-value=0.21 Score=63.20 Aligned_cols=67 Identities=24% Similarity=0.456 Sum_probs=50.3
Q ss_pred CCCcceEEEecCCcceEEec--c-----CCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC-CCcEEEEEEe
Q psy84 212 GEHLGFCIIPSFHGIHQIGD--I-----KCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLKK 283 (2182)
Q Consensus 212 ~e~LG~~I~~~~~g~h~Vsr--I-----~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s-~~~VtL~lkk 283 (2182)
+.++|+.+++ +|.++|.- | ..+|||... .|++||.|++|||+.|..| +++.++|++. +..++|++++
T Consensus 95 G~~iGI~l~t--~GVlVvg~~~v~~~~g~~~SPAa~A-GLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R 169 (402)
T TIGR02860 95 GQSIGVKLNT--KGVLVVGFSDIETEKGKIHSPGEEA-GIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIER 169 (402)
T ss_pred CEEEEEEEec--CEEEEEEEEcccccCCCCCCHHHHc-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEE
Confidence 4577877774 57766553 2 236899876 5999999999999999766 6788888876 4667888853
No 274
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=92.80 E-value=0.61 Score=60.09 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHH-----HHHHHHhccCCCCc---cccccceEEEeeeCCCCCcceEEEecCCcceEEeccCCCChhhhc
Q psy84 170 IENIRNSAKGLSE-----LADEMIREIHDPLL---LQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQS 241 (2182)
Q Consensus 170 e~~il~~~~~L~~-----i~D~I~~~~~dpll---~q~a~l~~V~L~K~~~e~LG~~I~~~~~g~h~VsrI~~gsPAd~s 241 (2182)
++++..+|..+.+ .-+.-+....+|.+ ..+..|..+.+.. +.-.||+.+... +|...|+.|..||||+..
T Consensus 401 ~e~v~av~~~~tg~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~~-~~~~LGl~v~~~-~g~~~i~~V~~~gPA~~A 478 (558)
T COG3975 401 PEDVQAVLENVTGLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKPR-EAYYLGLKVKSE-GGHEKITFVFPGGPAYKA 478 (558)
T ss_pred HHHHHHHHHhhccccHHHHHHHHhhcCCCCChhhhhhhcceEEEecCC-CCcccceEeccc-CCeeEEEecCCCChhHhc
Confidence 3456666665544 22333444444443 2333333333222 123889999865 677799999999999987
Q ss_pred CCcCCCCeEEEECCe
Q psy84 242 GKIECGDEIVQINYQ 256 (2182)
Q Consensus 242 g~L~~GDEIvqVNGq 256 (2182)
+|.+||+||.|||.
T Consensus 479 -Gl~~Gd~ivai~G~ 492 (558)
T COG3975 479 -GLSPGDKIVAINGI 492 (558)
T ss_pred -cCCCccEEEEEcCc
Confidence 59999999999999
No 275
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=92.74 E-value=0.14 Score=65.05 Aligned_cols=52 Identities=21% Similarity=0.130 Sum_probs=41.5
Q ss_pred EEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEEec
Q psy84 228 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKR 284 (2182)
Q Consensus 228 ~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lkkr 284 (2182)
.|+.|.+||||+.. +|++||+|+.|||+.|.-|. ++...+. ...++|+|.++
T Consensus 1 ~I~~V~pgSpAe~A-GLe~GD~IlsING~~V~Dw~--D~~~~l~--~e~l~L~V~~r 52 (433)
T TIGR03279 1 LISAVLPGSIAEEL-GFEPGDALVSINGVAPRDLI--DYQFLCA--DEELELEVLDA 52 (433)
T ss_pred CcCCcCCCCHHHHc-CCCCCCEEEEECCEECCCHH--HHHHHhc--CCcEEEEEEcC
Confidence 37889999999977 59999999999999998775 4555553 46788888643
No 276
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=92.71 E-value=0.34 Score=50.53 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=56.3
Q ss_pred CCCCceEEEEEEe----CCeEEEEec--CCCCccceeEecCC-cEEEec--ccccCcceeEEEEcCC-eEEEEEcCCHHH
Q psy84 1871 TVPQWIRGWFIIK----GNHFYGFTD--KDSTKAHLFIYLPG-FTVAPA--VEVKSRKYALKIYHTG-TTFYLSADSQDE 1940 (2182)
Q Consensus 1871 ~~K~WKKRWFVLk----d~~LyYYKd--e~d~kp~GsI~L~g-~tVs~a--~e~ksRk~aFkI~~~~-rtyyFsAdSeeE 1940 (2182)
+...|+|-=.+|. +..|.+|-- .+..+|+-.|.... ..|..+ -+...+.+.|.|.-.+ ..|.|-|.++++
T Consensus 17 ~~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q 96 (107)
T cd01231 17 SGARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQ 96 (107)
T ss_pred CccccceeeEEEEecCCCceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHH
Confidence 3467988777776 234444444 57777877776655 222222 2334478899999877 899999999999
Q ss_pred HHHHHHHHHH
Q psy84 1941 FSSWLGCLSQ 1950 (2182)
Q Consensus 1941 m~~WI~AL~~ 1950 (2182)
|+.||..|+.
T Consensus 97 ~~SWla~Ir~ 106 (107)
T cd01231 97 LNSWLAELRY 106 (107)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 277
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=92.70 E-value=0.31 Score=53.65 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=53.2
Q ss_pred cccceEEEeeeC----CCCCcceEEEec-C----CcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHH
Q psy84 199 PSSLDLATLKKR----PGEHLGFCIIPS-F----HGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMAL 269 (2182)
Q Consensus 199 ~a~l~~V~L~K~----~~e~LG~~I~~~-~----~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~l 269 (2182)
...++.|.+... ..+.||++|+-. . ....-|-+|.+||||+.+|..-.+|-|+.+++..+. ..+++.++
T Consensus 8 ~~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~--~~~~l~~~ 85 (138)
T PF04495_consen 8 GQTTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLD--DEDDLFEL 85 (138)
T ss_dssp TSSEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHH
T ss_pred CCeEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecC--CHHHHHHH
Confidence 345677777531 145899999965 2 234467789999999999854457999999999888 45788888
Q ss_pred HHhC-CCcEEEEE
Q psy84 270 FEES-SSDIFLTL 281 (2182)
Q Consensus 270 Lr~s-~~~VtL~l 281 (2182)
+... ...+.|.|
T Consensus 86 v~~~~~~~l~L~V 98 (138)
T PF04495_consen 86 VEANENKPLQLYV 98 (138)
T ss_dssp HHHTTTS-EEEEE
T ss_pred HHHcCCCcEEEEE
Confidence 8665 56777777
No 278
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=92.64 E-value=0.35 Score=58.26 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=43.7
Q ss_pred eEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEe
Q psy84 1368 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 1424 (2182)
Q Consensus 1368 h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKk 1424 (2182)
..|..+.+++||++.| |+.||.|++|||+.|..| .++.+++.+. +..++|++++
T Consensus 193 ~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R 248 (259)
T TIGR01713 193 YRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVER 248 (259)
T ss_pred EEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEE
Confidence 3788899999998877 999999999999999755 4566666664 3578888874
No 279
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=92.59 E-value=0.15 Score=65.59 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=43.3
Q ss_pred EEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEeC
Q psy84 1369 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKKR 1425 (2182)
Q Consensus 1369 ~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKkr 1425 (2182)
+|+.|.++|||++.| |++||.|++|||+.|..| +++...+... +..+++++.+.
T Consensus 129 lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~ 184 (449)
T PRK10779 129 VVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPF 184 (449)
T ss_pred cccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeC
Confidence 799999999998776 999999999999999988 4555555444 35677777643
No 280
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=92.41 E-value=0.16 Score=64.56 Aligned_cols=50 Identities=24% Similarity=0.201 Sum_probs=40.3
Q ss_pred EeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEe
Q psy84 1370 IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 1424 (2182)
Q Consensus 1370 Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKk 1424 (2182)
|+.|.+||||+..| |++||+|+.|||+.|.-|. ++...+. ...++|++++
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~--D~~~~l~--~e~l~L~V~~ 51 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLI--DYQFLCA--DEELELEVLD 51 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHhc--CCcEEEEEEc
Confidence 78899999998876 9999999999999998774 5555553 3568887764
No 281
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.28 E-value=0.43 Score=49.39 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=56.9
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecC-------CCCcceEEEEcCCcEEEeccccCCCcceEEEEe-CCe
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK-------DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYH-TGT 783 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk-------~dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~-~~r 783 (2182)
.+|+|.+...+ .=|.|-|-|=+..|.|-+-+ ..-+....|+|.+..+... .|++.+ +++
T Consensus 5 ~eg~lvel~~~-----~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------~~~~~~~~~K 71 (96)
T cd01228 5 KDSFLVELVEG-----SRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------PFRIHNKNGK 71 (96)
T ss_pred ccceeeeehhC-----CCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch--------hhhccccCCc
Confidence 58999988855 34556666666666654321 2335566899998766543 255555 459
Q ss_pred EEEEEcCCHHHHHHHHHHHHH
Q psy84 784 TFYLSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 784 tyyFaAdSeeEme~WI~AL~~ 804 (2182)
+|.|.|.|..|..+||.+|+.
T Consensus 72 Sf~~~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 72 SYTFLLSSDYERSEWRESIQK 92 (96)
T ss_pred eEEEEecCHHHHHHHHHHHHH
Confidence 999999999999999999975
No 282
>PF15406 PH_6: Pleckstrin homology domain
Probab=92.26 E-value=0.27 Score=51.81 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=44.4
Q ss_pred eCCe-EEEEecCCCCccceeEecCCcEEEecccccCcceeEEEEcCCeEEEEEcCCHHHHHHHHHHHH
Q psy84 1883 KGNH-FYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLS 1949 (2182)
Q Consensus 1883 kd~~-LyYYKde~d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyFsAdSeeEm~~WI~AL~ 1949 (2182)
+|.. |||-|.++...|.|.|+|... .++..+. ..+|.|++ .+....|.|.+..|+..||.+|.
T Consensus 47 TGKGLLF~~K~~dka~P~GiinLada-se~~~~g-~~kF~f~~--~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 47 TGKGLLFFSKAEDKASPSGIINLADA-SEPEKDG-SNKFHFKI--KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred cCceEEEEeccccccCCcceEehhhc-cccccCC-CceEEEEe--CCceeeeecCCHHHhccHHHHhh
Confidence 4444 555554556789999999872 2222222 24555555 78889999999999999999986
No 283
>KOG4407|consensus
Probab=91.54 E-value=0.041 Score=74.55 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=84.4
Q ss_pred cCCCCcccCCCCceEEEEEee------cC-CCCCCCCceEEEEEEeCCeEEEEecCCC--------------CccceeEe
Q psy84 1845 RRNISVKDLVMPDCEGWLFQR------DR-KISTVPQWIRGWFIIKGNHFYGFTDKDS--------------TKAHLFIY 1903 (2182)
Q Consensus 1845 RRnis~~~Lg~~dkeGWL~KK------g~-k~s~~K~WKKRWFVLkd~~LyYYKde~d--------------~kp~GsI~ 1903 (2182)
|..++........++||||.+ |. .++.++.|++-|.+|.++.|+.|++... ....-.+.
T Consensus 912 rsD~s~e~Fsd~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c 991 (1973)
T KOG4407|consen 912 RSDHSIELFSDSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSEC 991 (1973)
T ss_pred hhhhhhhhhhhhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccc
Confidence 344444566677899999844 31 2346789999999999999999998854 12233678
Q ss_pred cCCcEEEec-ccccCcceeEEEEcCC-eEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy84 1904 LPGFTVAPA-VEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1904 L~g~tVs~a-~e~ksRk~aFkI~~~~-rtyyFsAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
|.+|.+++. .+.+ ++..|++.+.+ ..+.|.|++.++|-.|++..+..+...
T Consensus 992 ~nscltdI~ysetk-rn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St~~n 1044 (1973)
T KOG4407|consen 992 LNSCLTDIQYSETK-RNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSSTTEN 1044 (1973)
T ss_pred cccchhhhhhhhhh-hhhHHHhHHHHHHhHhhccCccccccchhhhhhhccccc
Confidence 888888884 4554 89999999998 999999999999999999986655433
No 284
>KOG4807|consensus
Probab=91.36 E-value=0.0038 Score=75.54 Aligned_cols=79 Identities=20% Similarity=0.383 Sum_probs=65.2
Q ss_pred CCceEEEEEEeCCeEEEEecCC---CCccceeEecCCcEEEecccccCcceeEEEEcCCeEEEEEcCCHHHHHHHHHHHH
Q psy84 1873 PQWIRGWFIIKGNHFYGFTDKD---STKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLS 1949 (2182)
Q Consensus 1873 K~WKKRWFVLkd~~LyYYKde~---d~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~rtyyFsAdSeeEm~~WI~AL~ 1949 (2182)
..|++.||||.+..+-||.++. .....|.|+|.+|+-... -...+.|.|+|.+.+..|.+.|.+..-...|+.|++
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e-~a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~ 111 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTE-YAVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALR 111 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHH-HHHHhccceeecccchhhhhHHHHHHHHHHHHHHHH
Confidence 4699999999999999999983 345688999998643221 123478999999999999999999999999999999
Q ss_pred HHh
Q psy84 1950 QAT 1952 (2182)
Q Consensus 1950 ~As 1952 (2182)
+..
T Consensus 112 kT~ 114 (593)
T KOG4807|consen 112 KTV 114 (593)
T ss_pred hcc
Confidence 644
No 285
>KOG3727|consensus
Probab=91.15 E-value=0.032 Score=70.83 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=59.0
Q ss_pred CCceeEEEEEeCCeEEEEecCCCCcceEEEEcCCcEEEeccc---cCCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHH
Q psy84 727 PQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE---VKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCL 802 (2182)
Q Consensus 727 k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g~tV~~~~d---~ksRk~aFkL~~~~-rtyyFaAdSeeEme~WI~AL 802 (2182)
+.|...|++.....+.||+++ ..|...|.|.||.|.++.. .+.+.++....-++ ..+|+.|++|+...+||+|.
T Consensus 377 r~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaC 454 (664)
T KOG3727|consen 377 RYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAAC 454 (664)
T ss_pred hHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHh
Confidence 345555666666677777766 6788899999999877632 22334444444455 79999999999999999999
Q ss_pred HHhhhh
Q psy84 803 SQATIA 808 (2182)
Q Consensus 803 ~~As~~ 808 (2182)
+.|+-.
T Consensus 455 rLASKG 460 (664)
T KOG3727|consen 455 RLASKG 460 (664)
T ss_pred hHhhcC
Confidence 998874
No 286
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=91.10 E-value=0.17 Score=50.27 Aligned_cols=64 Identities=17% Similarity=0.410 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHhhc--cchhhhhHHhHhhc-ccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 6 VADWKPDQVADWLKGL--DVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 6 V~~Ws~~qV~~WL~GL--d~~l~~Y~~~F~~~-~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
-..||.++|..||.-. .-+|.+ + .|... +|+|++|-.|+.+|+..+. +-.--+++++-+++||.
T Consensus 5 P~~Wt~~~V~~WL~Wa~~ef~L~~-i-~~~~F~~m~Gk~LC~lt~edF~~~~--~~~~GdiL~~hL~~Lr~ 71 (75)
T cd08531 5 PTLWTREHVRQWLEWAVKEYGLQD-V-DVSRFQNIDGKELCKMTKEDFLRLT--SAYNADVLLSHLSYLRE 71 (75)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCC-C-ChhhccCCChHHHHcCCHHHHHHHc--CCCcchHHHHHHHHHHh
Confidence 4689999999999822 011211 1 24555 9999999999999987762 22223677888888874
No 287
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=90.90 E-value=0.19 Score=50.81 Aligned_cols=62 Identities=18% Similarity=0.406 Sum_probs=43.6
Q ss_pred cCCCCCHHHHHHHHhhccchhhhh---HHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 5 NVADWKPDQVADWLKGLDVSIHRY---VESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GLd~~l~~Y---~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
....||.++|..||.-. +.+| .-.|...+|+|++|..|+.+|+..+- . +--.++.+-++.|+
T Consensus 16 dP~~Wt~~~V~~Wl~w~---~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~--p-~~GdiL~~hL~~Lk 80 (82)
T smart00251 16 DPQLWTEDHVLEWLEWA---VKEFSLSPIDFSKFDMSGKELCSMSKEEFLERA--P-FGGDILWSHLQILR 80 (82)
T ss_pred ChhhCCHHHHHHHHHHH---HHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHc--C-CchHHHHHHHHHHH
Confidence 35689999999999833 2233 11255569999999999999976642 1 33456777777776
No 288
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=90.42 E-value=0.34 Score=47.83 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHhhccchhhhh---HHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 6 VADWKPDQVADWLKGLDVSIHRY---VESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 6 V~~Ws~~qV~~WL~GLd~~l~~Y---~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
...||.++|..||.-. +.+| --.|...+|+|++|-.|+.+|+..+-=...| +++++-++.||.
T Consensus 4 P~~Wt~~~V~~WL~Wa---~~ef~L~~v~~~~F~m~Gk~LC~ls~edF~~~~p~~~G--dIL~~hL~~L~k 69 (71)
T cd08533 4 PRLWTETHVRQWLLWA---VNEFSLEGVNFQKFCMSGRDLCALGKERFLELAPDFVG--DILWEHLEILQK 69 (71)
T ss_pred hhhCCHHHHHHHHHHH---HHHcCCCCCCcccCCCCHHHHHcCCHHHHHHHcCCCcc--hHHHHHHHHHHh
Confidence 4689999999999822 1221 0135566999999999999997765222345 467777888774
No 289
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=90.21 E-value=0.17 Score=49.41 Aligned_cols=58 Identities=21% Similarity=0.495 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHhhccchhhhh--H---HhHhhcccCchhhcCCChhhhhcc-CCcchhHHHHHHHHHHHH
Q psy84 7 ADWKPDQVADWLKGLDVSIHRY--V---ESFLNNHVNGQHLLNLQPDDLEHH-GICKVGHQEIILEAVDHL 71 (2182)
Q Consensus 7 ~~Ws~~qV~~WL~GLd~~l~~Y--~---~~F~~~~I~G~~LL~L~~~dL~~L-GV~~iGHre~IL~aV~~L 71 (2182)
..||.+||.+||.-. +.+| . -.|...+|+|++|..|+.+|+..+ +. .|. ++.+.++.|
T Consensus 3 ~~Wt~~~V~~Wl~w~---~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~~p~--~Gd--iL~~~l~~~ 66 (68)
T cd08757 3 QYWTKNDVLEWLQFV---AEQNKLDAECISFQKFNIDGQTLCSMTEEEFREAAGS--YGS--LLYAELQRL 66 (68)
T ss_pred hhCCHHHHHHHHHHH---HHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHHcCC--cHH--HHHHHHHHH
Confidence 579999999999833 2221 1 024555999999999999997653 32 453 445555444
No 290
>PF15404 PH_4: Pleckstrin homology domain
Probab=89.89 E-value=1 Score=51.99 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=38.7
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCC-----C------CcceEEEEcCCcEEEe
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD-----S------TKAHLFIYLPGFTVAP 765 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~-----d------kkpkGsI~L~g~tV~~ 765 (2182)
+.|+|+.+.+... .|+++|+||..+.|..|+.-. . ..-...|+|.+|-|-.
T Consensus 1 ~sG~LY~K~~khs---~F~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYvYS 62 (185)
T PF15404_consen 1 MSGYLYQKPRKHS---TFKKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYVYS 62 (185)
T ss_pred CCceeeecCCCCC---CceEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCceEEe
Confidence 4799999987754 899999999999999998721 1 1223469999877743
No 291
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=89.83 E-value=0.33 Score=48.51 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=43.9
Q ss_pred cCCCCCHHHHHHHHhhc--cchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 5 NVADWKPDQVADWLKGL--DVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GL--d~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
....||.++|..||.-. .-+|.. .|...+|+|++|-.|+.+|+..+ +-..| .++.+-++.||.
T Consensus 9 DP~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~edF~~r-~p~~G--diL~~hL~~lk~ 73 (76)
T cd08532 9 DPYQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEEDFRRR-APQGG--DTLHAQLDIWKS 73 (76)
T ss_pred ChhhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHHHHHHH-cCCch--hHHHHHHHHHHH
Confidence 35689999999999922 012222 35666999999999999997765 22244 456677777763
No 292
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=89.78 E-value=0.34 Score=49.71 Aligned_cols=66 Identities=18% Similarity=0.423 Sum_probs=45.6
Q ss_pred cCCCCCHHHHHHHHhhc--cchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHhh
Q psy84 5 NVADWKPDQVADWLKGL--DVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNF 74 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GL--d~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~l 74 (2182)
.-..||.++|..||.-. .-+|.+ + .+...+++|++|-.|+.+|+..+ ...+--+++++-+++||..
T Consensus 18 DP~~Wt~~~V~~WL~Wa~~ef~L~~-v-~~~~F~m~Gk~LC~Ls~edF~~r--~p~~~GdiL~~hLe~Lrk~ 85 (89)
T cd08534 18 DPMEWTEDQVLHWVVWAVKEFSLTD-I-DLSDWNITGRELCSLTQEEFFQR--VPKDPGDIFWTHLELLRKC 85 (89)
T ss_pred ChHHcCHHHHHHHHHHHHHHcCCCC-C-ChhhcCCCHHHHhcCCHHHHHHH--cCCCccHHHHHHHHHHHHc
Confidence 34689999999999822 001211 1 35566899999999999997764 2222346788888888854
No 293
>KOG0705|consensus
Probab=89.65 E-value=0.16 Score=65.10 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=32.1
Q ss_pred ceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy84 774 YALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 774 ~aFkL~~~~-rtyyFaAdSeeEme~WI~AL~~As~~~ 809 (2182)
++|.|+..- .+++|.|.+.+|++.||+||+.-+...
T Consensus 446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaS 482 (749)
T KOG0705|consen 446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILAS 482 (749)
T ss_pred ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 599999875 999999999999999999998877754
No 294
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=89.54 E-value=0.93 Score=58.54 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHH-----HHhHhhccCCCcccCC-cccceeeEeecCC-CCCcceEEEecCCcceEEeccCCCChhhhcC
Q psy84 1311 IENIRNSAKGLSE-----LADEMIREIHDPLLLQ-PSSLDLATLKKRP-GEHLGFCIIPSFHGIHQIGDIKCNSTAYQSG 1383 (2182)
Q Consensus 1311 e~~i~~ic~~L~~-----icD~Il~~spD~l~~q-~a~le~V~L~K~~-~e~LG~~I~s~~~G~h~Is~I~~gSPAd~~g 1383 (2182)
++.+..+|+.+.+ ..|.-|-...++.+.+ .....++...+.. .-.||+.+.+. +|...|+.|..+|||+.-|
T Consensus 401 ~e~v~av~~~~tg~dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~~~~~~LGl~v~~~-~g~~~i~~V~~~gPA~~AG 479 (558)
T COG3975 401 PEDVQAVLENVTGLDLATFFDEYIEGTEPPPLNPLLERFGLTFTPKPREAYYLGLKVKSE-GGHEKITFVFPGGPAYKAG 479 (558)
T ss_pred HHHHHHHHHhhccccHHHHHHHHhhcCCCCChhhhhhhcceEEEecCCCCcccceEeccc-CCeeEEEecCCCChhHhcc
Confidence 4556666655544 4444444444443322 1112222222222 22799999877 5667999999999997776
Q ss_pred cccCCCeEEEECCeEecCCCHHHHHHHHHh--cCCcEEEEEEeCC
Q psy84 1384 KIECGDEIVQINYQTVVGWDVKQVMALFEE--SSSDIFLTLKKRP 1426 (2182)
Q Consensus 1384 ~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre--~~~~vtL~LKkrP 1426 (2182)
|.+||+||.|||.+- .|.. +.+.|.+.+..++
T Consensus 480 -l~~Gd~ivai~G~s~----------~l~~~~~~d~i~v~~~~~~ 513 (558)
T COG3975 480 -LSPGDKIVAINGISD----------QLDRYKVNDKIQVHVFREG 513 (558)
T ss_pred -CCCccEEEEEcCccc----------cccccccccceEEEEccCC
Confidence 999999999999922 1221 2466666666555
No 295
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=89.24 E-value=0.26 Score=48.44 Aligned_cols=49 Identities=24% Similarity=0.435 Sum_probs=36.4
Q ss_pred cCCCCchhhhhhhc---ccchhHHHhHHHHhhccCCchhhhCCChhhhhccCC
Q psy84 1147 INNWKPDQVADWLK---GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGI 1196 (2182)
Q Consensus 1147 I~sWs~dQVv~WLk---GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV 1196 (2182)
...|+.++|+.|.. ++++. ......|.+|+|+|..|..|+-+|=++|-=
T Consensus 3 ~~~Wsv~eVv~WC~~~L~l~~~-d~l~~~l~en~I~Gd~L~eLtl~DCKeLc~ 54 (75)
T PF09235_consen 3 FSNWSVDEVVSWCISSLELDDE-DPLCNNLRENDITGDVLPELTLEDCKELCD 54 (75)
T ss_dssp TTT--HHHHHHHHHHHHSS-TT-SCHHHHHHHTT--CCCHHHHHHHHHHHCTT
T ss_pred cccccHHHHHHHHHHhcCCCCC-CHHHHHHHHccCccchhhhccHHHHHHHcC
Confidence 46799999999997 66554 456678999999999999999999888743
No 296
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=89.16 E-value=0.4 Score=47.00 Aligned_cols=62 Identities=23% Similarity=0.393 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHhhccchhhhhH---HhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 6 VADWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 6 V~~Ws~~qV~~WL~GLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
-..||.++|..||.-. +.+|- -.|...+++|++|-.|+.+|+... +-..| .++.+-++.||.
T Consensus 3 P~~Wt~~~V~~WL~wa---~~ef~L~~i~~~~F~mnGk~LC~ls~edF~~r-~p~~G--diL~~hL~~L~~ 67 (68)
T cd08535 3 PRYWSRDDVLQWLRWA---ENEFSLPPIDSNTFEMNGKALCLLTKEDFRYR-SPHSG--DVLYELLQHLLK 67 (68)
T ss_pred hhhCCHHHHHHHHHHH---HHhcCCCCCChhccCCCHHHHhcCCHHHHhhh-CCCch--HHHHHHHHHHHh
Confidence 4689999999999822 12220 125566899999999999997654 32344 466777777763
No 297
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.52 E-value=4.6 Score=43.42 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=55.9
Q ss_pred CCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCC----cc----eEEEEcCCcEEEeccccCCCcceEEEEe
Q psy84 709 MPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST----KA----HLFIYLPGFTVAPAVEVKSRKYALKIYH 780 (2182)
Q Consensus 709 ~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk----kp----kGsI~L~g~tV~~~~d~ksRk~aFkL~~ 780 (2182)
...++|-+....+..+..+.=+.|-+-|=...|.|-|...+. .+ +..|.+....+....+. .+..|.|..
T Consensus 4 ~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~g--d~~kF~i~~ 81 (114)
T cd01232 4 KLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEG--DPCRFALWS 81 (114)
T ss_pred ceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCC--CCceEEEEe
Confidence 334566666655442111223344444555555555543221 12 24577776555543322 345566655
Q ss_pred CC-----eEEEEEcCCHHHHHHHHHHHHHhh
Q psy84 781 TG-----TTFYLSADSQDEFSSWLGCLSQAT 806 (2182)
Q Consensus 781 ~~-----rtyyFaAdSeeEme~WI~AL~~As 806 (2182)
.+ .+|.+.|.|.++.+.|+..|++..
T Consensus 82 ~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 82 GDPPISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred CCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 43 699999999999999999998865
No 298
>KOG3727|consensus
Probab=88.44 E-value=0.072 Score=67.88 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCceEEEEEEeCCeEEEEecCCCCccceeEecCCcEEEec-cc--ccCcceeEEEEcCC-eEEEEEcCCHHHHHHHHHHH
Q psy84 1873 PQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPA-VE--VKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCL 1948 (2182)
Q Consensus 1873 K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g~tVs~a-~e--~ksRk~aFkI~~~~-rtyyFsAdSeeEm~~WI~AL 1948 (2182)
+.|..+|++.....+.||++. ..|.+.|.|.||.|.++ .. .+...++.+..-++ ..+|+.|++++...+||.|.
T Consensus 377 r~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaC 454 (664)
T KOG3727|consen 377 RYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAAC 454 (664)
T ss_pred hHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHh
Confidence 457777777778888888887 67889999999988775 22 22334444444555 79999999999999999999
Q ss_pred HHHhhhcC
Q psy84 1949 SQATIAHD 1956 (2182)
Q Consensus 1949 ~~As~~~~ 1956 (2182)
+.|+.+-.
T Consensus 455 rLASKGkt 462 (664)
T KOG3727|consen 455 RLASKGKT 462 (664)
T ss_pred hHhhcCCc
Confidence 99997744
No 299
>KOG3532|consensus
Probab=88.43 E-value=1.1 Score=58.63 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=62.1
Q ss_pred eeCCCCCcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEE
Q psy84 208 KKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLK 282 (2182)
Q Consensus 208 ~K~~~e~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lk 282 (2182)
.+..+.++|+....+.+..+-|..|.+++||+.+ .+.+||.+|.|||+.|. +..++.+.|+...+.|+..+.
T Consensus 381 ~~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~-~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~ 452 (1051)
T KOG3532|consen 381 RYDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKA-AFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVE 452 (1051)
T ss_pred cccccCceeEEEecCCceEEEEEEecCCChhhHh-cCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEe
Confidence 3444668999999888889999999999999988 69999999999999996 677889999988888876663
No 300
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=88.12 E-value=0.36 Score=48.45 Aligned_cols=63 Identities=19% Similarity=0.386 Sum_probs=42.9
Q ss_pred ccCCCCCHHHHHHHHhhccchhhhhH-----HhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 4 VNVADWKPDQVADWLKGLDVSIHRYV-----ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 4 ~~V~~Ws~~qV~~WL~GLd~~l~~Y~-----~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
+....||.++|.+||.-. +.+|- -.|.+.+|+|++|-.|+++|+..+ +-+.|+ .+...+..|+
T Consensus 5 ~dP~~Ws~~~V~~WL~Wa---v~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~~-~p~~Gd--vLy~~lq~~~ 72 (78)
T cd08538 5 VHPEYWTKRHVWEWLQFC---CDQYKLDANCISFCHFNISGLQLCSMTQEEFIEA-AGICGE--YLYFILQNIR 72 (78)
T ss_pred CCccccCHHHHHHHHHHH---HHHcCCCccccchhhcCCCHHHHHcCCHHHHHHH-cccchH--HHHHHHHHHH
Confidence 466899999999999822 22221 146777999999999999996553 223554 3455555554
No 301
>KOG1945|consensus
Probab=88.05 E-value=0.87 Score=56.19 Aligned_cols=66 Identities=24% Similarity=0.427 Sum_probs=60.7
Q ss_pred cCCCCchhhhhhhcccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1147 INNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1147 I~sWs~dQVv~WLkGLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
+-.|+-+||..|+..++ .++|+..|..+.+.|.+|++++...++-||-++--.|.+....|+.+..
T Consensus 264 l~~~~k~q~~~~~~s~~--kei~a~e~a~q~~~~y~L~q~q~~~k~~L~~tk~~dralr~k~le~~~~ 329 (377)
T KOG1945|consen 264 LVTWKKQQVYHWLLSLN--KEIYAQEFAAQEQAGYQLLQLQGRKKKLLGRTKSHDRALRKKKLEEMSA 329 (377)
T ss_pred hhhhHHHHHHHHHHhhh--HHHHHHHHHHhhcccchhhccchHHHHHhhccccchHHHHHHHHHHHHH
Confidence 56799999999999997 6799999999999999999999999999999999989888888887764
No 302
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=87.84 E-value=0.65 Score=47.67 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=44.4
Q ss_pred cCCCCCHHHHHHHHhhccchhhhhH---HhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 5 NVADWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
....||.++|..||.-. +.+|- -.|...+|+|++|-.|+.+|+..+-=.-.| +++++-+++||.
T Consensus 18 DP~~Wt~~~V~~WL~Wa---~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~~~G--dIL~~HL~~L~k 84 (88)
T cd08542 18 DPRQWTETHVRDWVMWA---VNEFSLKGVDFQKFCMNGAALCALGKECFLELAPDFVG--DILWEHLEILQK 84 (88)
T ss_pred ChhhCCHHHHHHHHHHH---HHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCCCcc--HHHHHHHHHHHH
Confidence 34689999999999821 12220 035556899999999999997654311134 577888888874
No 303
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=87.61 E-value=0.27 Score=47.65 Aligned_cols=61 Identities=26% Similarity=0.434 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHhhcc--chhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 7 ADWKPDQVADWLKGLD--VSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 7 ~~Ws~~qV~~WL~GLd--~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
..||.++|..||.-.- -+|.. -.+...+++|++|..|+.+|+...- -..| .++.+.++.|+
T Consensus 3 ~~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~edF~~~~-p~~G--diL~~hL~~l~ 65 (66)
T cd08203 3 RLWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTKEDFLRRA-PSGG--DILYEHLQLLR 65 (66)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCHHHHHHHc-CCcH--HHHHHHHHHHh
Confidence 5799999999998221 11222 1345559999999999999976642 1144 45566666554
No 304
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=87.55 E-value=0.57 Score=48.29 Aligned_cols=61 Identities=23% Similarity=0.418 Sum_probs=47.1
Q ss_pred CCCCchhhhhhhc------ccchhHHHhHHHHhhc-cCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHhhh
Q psy84 1148 NNWKPDQVADWLK------GLDVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFH 1216 (2182)
Q Consensus 1148 ~sWs~dQVv~WLk------GLd~~l~~Y~~~F~~~-~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~~~ 1216 (2182)
..|+.++|..||. +|+ .+ .|... +|+|++|-.|+++|+.++.-.-.| +++++-+++||.-.
T Consensus 18 ~~Wt~~hV~~WL~Wa~~ef~L~-~v-----d~~~F~~m~Gk~LC~LskedF~~~~p~~~g--diLw~HL~~Lr~~~ 85 (91)
T cd08541 18 TLWTQEHVRQWLEWAIKEYGLM-EI-----DTSFFQNMDGKELCKMNKEDFLRATSLYNT--EVLLSHLSYLRESS 85 (91)
T ss_pred hhcCHHHHHHHHHHHHHHcCCC-CC-----ChhhccCCCHHHHHhCCHHHHHHHcCCCcc--HHHHHHHHHHHhCc
Confidence 4699999999997 332 11 24444 799999999999998876555566 88999999998743
No 305
>KOG4407|consensus
Probab=87.50 E-value=0.041 Score=74.57 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=80.5
Q ss_pred CCCcCCCCCCeeEEEEee------c-CCCCCCCCceeEEEEEeCCeEEEEecCCCC--------------cceEEEEcCC
Q psy84 702 ISVKDLVMPDCEGWLFQR------D-RKISTVPQWIRGWFIIKGNHFYGFTDKDST--------------KAHLFIYLPG 760 (2182)
Q Consensus 702 vsv~~lg~vdkeGWL~Kk------g-~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk--------------kpkGsI~L~g 760 (2182)
.....+-...++||||.+ + ..+..++.|+.-|-+|.++.|+.|++..+. .....+.|.+
T Consensus 915 ~s~e~Fsd~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~ns 994 (1973)
T KOG4407|consen 915 HSIELFSDSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNS 994 (1973)
T ss_pred hhhhhhhhhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCcccccc
Confidence 334455556799999843 3 222347899999999999999999996551 2223478888
Q ss_pred cEEEeccccCCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 761 FTVAPAVEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 761 ~tV~~~~d~ksRk~aFkL~~~~-rtyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
|.+........++..|++...+ ..+.|.|++-++|-.|+...+....
T Consensus 995 cltdI~ysetkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St~ 1042 (1973)
T KOG4407|consen 995 CLTDIQYSETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSSTT 1042 (1973)
T ss_pred chhhhhhhhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhccc
Confidence 8877754444588999999988 8999999999999999999855444
No 306
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.02 E-value=7.1 Score=42.03 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=48.4
Q ss_pred eEEEEEEeCCeEEEEecCCCC----c----cceeEecCCcEEEecccccCcceeEEEEcCC---eEEEEEcCCHHHHHHH
Q psy84 1876 IRGWFIIKGNHFYGFTDKDST----K----AHLFIYLPGFTVAPAVEVKSRKYALKIYHTG---TTFYLSADSQDEFSSW 1944 (2182)
Q Consensus 1876 KKRWFVLkd~~LyYYKde~d~----k----p~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~---rtyyFsAdSeeEm~~W 1944 (2182)
+.|.+-|=...|.|-+-..+. . -+..|.|....+....+....+|.+...++. .+|.+.|.|.++.+.|
T Consensus 25 ~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W 104 (114)
T cd01232 25 RERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEW 104 (114)
T ss_pred ceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHH
Confidence 455555655565555543221 1 2356777775555443323234444445544 6999999999999999
Q ss_pred HHHHHHHh
Q psy84 1945 LGCLSQAT 1952 (2182)
Q Consensus 1945 I~AL~~As 1952 (2182)
|..|+.+.
T Consensus 105 ~~~I~~il 112 (114)
T cd01232 105 VKKIREIL 112 (114)
T ss_pred HHHHHHHh
Confidence 99999865
No 307
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=86.97 E-value=0.6 Score=46.60 Aligned_cols=59 Identities=27% Similarity=0.537 Sum_probs=44.5
Q ss_pred CCCCchhhhhhhc------ccchhHHHhHHHHhhc-cCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1148 NNWKPDQVADWLK------GLDVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1148 ~sWs~dQVv~WLk------GLd~~l~~Y~~~F~~~-~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
..|+.++|..||. +|+.. + +... +++|++|-.|+.+|+.++-=...| +++++-+++||.
T Consensus 6 ~~Wt~~~V~~WL~Wa~~ef~L~~~-----~-~~~F~~m~Gk~LC~LskedF~~~ap~~~G--diL~~HL~~Lr~ 71 (75)
T cd08540 6 TLWSTDHVRQWLEWAVKEYGLPDV-----D-VLLFQNIDGKELCKMTKDDFQRLTPSYNA--DILLSHLHYLRE 71 (75)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCCC-----C-cccccCCCHHHHHhCCHHHHHHHcCCCCc--hHHHHHHHHHHh
Confidence 4599999999997 44321 1 3444 699999999999998665434456 788899999985
No 308
>KOG3532|consensus
Probab=86.95 E-value=1.3 Score=57.81 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=58.2
Q ss_pred ecCCCCCcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEE
Q psy84 1349 KKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFL 1420 (2182)
Q Consensus 1349 ~K~~~e~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL 1420 (2182)
.+..+.++|+..+-+++..+-|..|..|+||+... +.+||.+|.|||+.|. +..++.+.|+...+.|+.
T Consensus 381 ~~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~ 449 (1051)
T KOG3532|consen 381 RYDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTV 449 (1051)
T ss_pred cccccCceeEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEE
Confidence 35556689999999999999999999999998875 9999999999999996 667788888887555543
No 309
>KOG4807|consensus
Probab=86.74 E-value=0.014 Score=70.98 Aligned_cols=77 Identities=21% Similarity=0.387 Sum_probs=64.0
Q ss_pred CCceeEEEEEeCCeEEEEecCC---CCcceEEEEcCCcEEEeccccCCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHH
Q psy84 727 PQWIRGWFIIKGNHFYGFTDKD---STKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLS 803 (2182)
Q Consensus 727 k~WKKRWFVLkd~~LyYYKdk~---dkkpkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~rtyyFaAdSeeEme~WI~AL~ 803 (2182)
-.|++-|||+++..+-||.+.. .....|.|+|.+|+ .+..-...+.|.|.|...+.+|.|.|-+..-...|+.|++
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~-~v~e~a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~ 111 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCT-DVTEYAVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALR 111 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHH-HHHHHHHHhccceeecccchhhhhHHHHHHHHHHHHHHHH
Confidence 3799999999999999999853 33556789999986 2222233578999999999999999999999999999998
Q ss_pred H
Q psy84 804 Q 804 (2182)
Q Consensus 804 ~ 804 (2182)
+
T Consensus 112 k 112 (593)
T KOG4807|consen 112 K 112 (593)
T ss_pred h
Confidence 5
No 310
>PF15404 PH_4: Pleckstrin homology domain
Probab=86.47 E-value=4.1 Score=47.14 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=36.4
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCC-----------CccceeEecCCcEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS-----------TKAHLFIYLPGFTV 1909 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d-----------~kp~GsI~L~g~tV 1909 (2182)
+.|+||.|.+++ ..|+++|+||..+.|..|..-.. ..-.-.|+|.+|-|
T Consensus 1 ~sG~LY~K~~kh---s~F~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYv 60 (185)
T PF15404_consen 1 MSGYLYQKPRKH---STFKKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYV 60 (185)
T ss_pred CCceeeecCCCC---CCceEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCceE
Confidence 479999988754 57999999999999999987311 11234788887555
No 311
>KOG4403|consensus
Probab=86.33 E-value=0.46 Score=59.15 Aligned_cols=69 Identities=23% Similarity=0.530 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhcCCCccccCCcCCCCchhhhhhhc-ccchhHHHhHHHHhhccCCchhhhCCChhh----hhccCCccc
Q psy84 1125 FTSVYELFIKYSLNPFYKINTPINNWKPDQVADWLK-GLDVSIHRYVESFLNNHVNGQHLLNLQPDD----LEHHGICKV 1199 (2182)
Q Consensus 1125 F~~VhelYvd~vmNPFy~~~~PI~sWs~dQVv~WLk-GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~d----L~~LGV~~i 1199 (2182)
..++|+++... -|.+|+-+++++||- -.+ |-||++.|..+.|+|+.|-+|--.. -+.|||..-
T Consensus 120 VedLWeaW~~S----------ev~nWT~e~tvqWLi~~Ve--LPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgikd~ 187 (575)
T KOG4403|consen 120 VEDLWEAWKES----------EVHNWTNERTVQWLINDVE--LPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGIKDR 187 (575)
T ss_pred HHHHHHHHHhh----------hhhcchHHHHHHHHHHhcc--cHHHHHHHHhccCCcccccccccCchHHhhhhhccCch
Confidence 35677777654 578899999999997 444 5599999999999999999886544 267888888
Q ss_pred chHHHH
Q psy84 1200 GHQEII 1205 (2182)
Q Consensus 1200 GHre~I 1205 (2182)
-||..|
T Consensus 188 ~hrQKl 193 (575)
T KOG4403|consen 188 SHRQKL 193 (575)
T ss_pred HHHHhh
Confidence 887764
No 312
>KOG3129|consensus
Probab=86.00 E-value=7.8 Score=45.46 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=25.5
Q ss_pred ceEEeccCCCChhhhcCcccCCCeEEEECC
Q psy84 1367 IHQIGDIKCNSTAYQSGKIECGDEIVQINY 1396 (2182)
Q Consensus 1367 ~h~Is~I~~gSPAd~~g~L~~GDeIvQVNG 1396 (2182)
..+|..|.++|||+..| |++||+|+++..
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGn 168 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGN 168 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecc
Confidence 57999999999998776 999999999754
No 313
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=85.77 E-value=1.5 Score=53.72 Aligned_cols=62 Identities=15% Similarity=0.358 Sum_probs=50.7
Q ss_pred EEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEeC
Q psy84 1359 CIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKKR 1425 (2182)
Q Consensus 1359 ~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKkr 1425 (2182)
.+.-++.|. ++..+..++|+ -|+|++||.|+.|||+.+. +.+++...++.. ++.||+..++.
T Consensus 124 pv~~~y~gv-yv~~v~~~~~~--~gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 124 PVEVTYAGV-YVLSVIDNSPF--KGKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred ceEEEEeeE-EEEEccCCcch--hceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence 344455666 77788899998 7899999999999999995 778888888875 78888888753
No 314
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=85.69 E-value=0.29 Score=49.40 Aligned_cols=62 Identities=21% Similarity=0.476 Sum_probs=41.8
Q ss_pred CCCCchhhhhhhcccchhHHHhH---HHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1148 NNWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
..|+.++|..||.-. ..+|- -.|..-+|+|++|..|+.+++.++.=. +--.++.+-+++||.
T Consensus 18 ~~Wt~~~V~~Wl~w~---~~~f~l~~~~~~~f~~~G~~Lc~lt~e~F~~~~~~--~~G~~Ly~~L~~Lk~ 82 (84)
T PF02198_consen 18 RLWTKEDVLQWLRWV---VREFDLPAIDFSRFNMNGRELCSLTKEDFRRRFPS--GYGDILYSHLQLLKK 82 (84)
T ss_dssp GG--HHHHHHHHHHH---HHHTT-SSCHGGGGTS-HHHHHHSHHHHHHHHSTH--TTHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHH---HHhcCCCcCchhccCCCHHHHHHcCHHHHHHHcCC--CcHHHHHHHHHHHHH
Confidence 569999999999622 11121 136666999999999999998776544 344577788888875
No 315
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=85.59 E-value=0.7 Score=46.13 Aligned_cols=63 Identities=17% Similarity=0.418 Sum_probs=43.5
Q ss_pred CCCCchhhhhhhccc--chhHHHhHHHHhhc-cCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1148 NNWKPDQVADWLKGL--DVSIHRYVESFLNN-HVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGL--d~~l~~Y~~~F~~~-~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
..|+.++|..||.-. ..+|.. + .|... .++|++|-.|+.+|+.++.=...| +++++-+++||.
T Consensus 6 ~~Wt~~~V~~WL~Wa~~ef~L~~-i-~~~~F~~m~Gk~LC~lt~edF~~~~~~~~G--diL~~hL~~Lr~ 71 (75)
T cd08531 6 TLWTREHVRQWLEWAVKEYGLQD-V-DVSRFQNIDGKELCKMTKEDFLRLTSAYNA--DVLLSHLSYLRE 71 (75)
T ss_pred hhcCHHHHHHHHHHHHHHcCCCC-C-ChhhccCCChHHHHcCCHHHHHHHcCCCcc--hHHHHHHHHHHh
Confidence 469999999999721 111111 1 24565 999999999999998776322233 577888888875
No 316
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=85.19 E-value=0.71 Score=45.01 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHh------hccchhhhhHHhHhhcccCchhhcCCChhhhhcc
Q psy84 7 ADWKPDQVADWLK------GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH 53 (2182)
Q Consensus 7 ~~Ws~~qV~~WL~------GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~L 53 (2182)
..||.++|..||. +|+. + .+....++|++|..|+.+|....
T Consensus 3 ~~Ws~~~V~~WL~w~~~ef~L~~-~-----~~~~F~m~Gk~LC~ls~edF~~r 49 (66)
T cd08536 3 RSWSREHVRTWLRWVSARYQLEV-V-----DLDKFLMNGKGLCLMSLEGFLYR 49 (66)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCC-C-----CccccCCCHHHHHcCCHHHHHhh
Confidence 5899999999998 4432 1 24455899999999999996654
No 317
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=85.12 E-value=0.57 Score=48.10 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHhhccchhhhhH---HhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 5 NVADWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
....||.++|..||.-. +.+|- -.|...+|+|++|-.|+++|+..+-=.-.| +++++-++.|+.
T Consensus 18 DP~~Wt~~~V~~WL~Wa---~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~ap~~~G--dIL~~HL~~l~k 84 (89)
T cd08543 18 NPWLWTEQQVCQWLLWA---TNEFSLVNVNFQQFGMNGQELCNLGKERFLELAPDFVG--DILWEHLEQMIK 84 (89)
T ss_pred ChhhCCHHHHHHHHHHH---HHHcCCCCCCcccCCCChHHHHcCCHHHHHhHcCCCcc--hHHHHHHHHHHH
Confidence 35689999999999822 22220 135566899999999999997654222234 466777777764
No 318
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.04 E-value=4.3 Score=43.04 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=48.7
Q ss_pred Cc-eeEEEEEe--CCeEEEEecCCCCcceEEEEcCC-cEEEecccc-------------CCCcceEEEEeCC----eEEE
Q psy84 728 QW-IRGWFIIK--GNHFYGFTDKDSTKAHLFIYLPG-FTVAPAVEV-------------KSRKYALKIYHTG----TTFY 786 (2182)
Q Consensus 728 ~W-KKRWFVLk--d~~LyYYKdk~dkkpkGsI~L~g-~tV~~~~d~-------------ksRk~aFkL~~~~----rtyy 786 (2182)
.| ++|.|.|. ++.|+|..... .....|+|.. -.|+.+... .....+|.|.+.. ++..
T Consensus 19 ~~~~~~~f~ld~~~~~l~W~~~~~--~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~ 96 (115)
T cd01248 19 SRERRRLFRLDEKGFFLYWKDEGK--KEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLD 96 (115)
T ss_pred CceeeEEEEEcCCCcEEEEeCCCC--ccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEE
Confidence 35 45678886 55666654322 1455677766 223332111 1235789998865 5899
Q ss_pred EEcCCHHHHHHHHHHHHH
Q psy84 787 LSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 787 FaAdSeeEme~WI~AL~~ 804 (2182)
|.|+|.++++.|+..|+.
T Consensus 97 lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 97 LVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EEECCHHHHHHHHHHHhh
Confidence 999999999999999863
No 319
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.78 E-value=4.5 Score=42.91 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=48.5
Q ss_pred Cce-EEEEEEe--CCeEEEEecCCCCccceeEecCC-cEEEecc-----------cc--cCcceeEEEEcCC----eEEE
Q psy84 1874 QWI-RGWFIIK--GNHFYGFTDKDSTKAHLFIYLPG-FTVAPAV-----------EV--KSRKYALKIYHTG----TTFY 1932 (2182)
Q Consensus 1874 ~WK-KRWFVLk--d~~LyYYKde~d~kp~GsI~L~g-~tVs~a~-----------e~--ksRk~aFkI~~~~----rtyy 1932 (2182)
.|. +|.|.|. +..|+|..... ...+.|+|.. -.|.... .. .....+|.|.+.. ++.+
T Consensus 19 ~~~~~~~f~ld~~~~~l~W~~~~~--~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~ 96 (115)
T cd01248 19 SRERRRLFRLDEKGFFLYWKDEGK--KEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLD 96 (115)
T ss_pred CceeeEEEEEcCCCcEEEEeCCCC--ccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEE
Confidence 464 5668886 44566654322 1456777776 2222210 10 1345789998764 6899
Q ss_pred EEcCCHHHHHHHHHHHHH
Q psy84 1933 LSADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1933 FsAdSeeEm~~WI~AL~~ 1950 (2182)
|.|+|.++++.|++.|+.
T Consensus 97 lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 97 LVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EEECCHHHHHHHHHHHhh
Confidence 999999999999999864
No 320
>KOG3129|consensus
Probab=83.70 E-value=9.5 Score=44.80 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=36.0
Q ss_pred ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCC-HHHHHHHHHhC-CCcEEEEEE
Q psy84 226 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD-VKQVMALFEES-SSDIFLTLK 282 (2182)
Q Consensus 226 ~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~-h~eVv~lLr~s-~~~VtL~lk 282 (2182)
..+|..|.++|||+.. .|++||+|+++..+.--... ..++...-+.. ...|.++|.
T Consensus 140 Fa~V~sV~~~SPA~~a-Gl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~ 197 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEA-GLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVI 197 (231)
T ss_pred eEEEeecCCCChhhhh-CcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEe
Confidence 4599999999999976 59999999997554432222 23333333333 344555553
No 321
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=83.63 E-value=2.2 Score=52.47 Aligned_cols=58 Identities=16% Similarity=0.395 Sum_probs=47.6
Q ss_pred cCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEEEEEec
Q psy84 222 SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKKR 284 (2182)
Q Consensus 222 ~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL~lkkr 284 (2182)
++.|. +|..+..++|+- |+|+.||.|..|||+.+. +.++....++.. ++.||++.++.
T Consensus 128 ~y~gv-yv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~ 187 (342)
T COG3480 128 TYAGV-YVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERH 187 (342)
T ss_pred EEeeE-EEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEec
Confidence 45565 777888888876 799999999999999995 788899888654 78888888643
No 322
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=83.24 E-value=1.6 Score=43.58 Aligned_cols=65 Identities=22% Similarity=0.477 Sum_probs=46.9
Q ss_pred cCCCCCHHHHHHHHhhc--cchhhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 5 NVADWKPDQVADWLKGL--DVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 5 ~V~~Ws~~qV~~WL~GL--d~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
....||..||.+||.-. -..+.----.|.+-+++|++|-.|..+++. +=+-.+|+ ++.+-++.|+
T Consensus 4 ~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~-~~~p~~Gd--iLy~~l~~~~ 70 (74)
T cd08539 4 HPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFT-RAAGTAGQ--LLYSNLQHLK 70 (74)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHh-hcCCchHH--HHHHHHHHHh
Confidence 45789999999999944 111111111477779999999999999977 66777887 4566676665
No 323
>KOG0705|consensus
Probab=82.73 E-value=0.64 Score=59.87 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=31.6
Q ss_pred eeEEEEcCC-eEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy84 1920 YALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1920 ~aFkI~~~~-rtyyFsAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
++|.|.... .+++|.|-+.+|+..||+||+.-+...
T Consensus 446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaS 482 (749)
T KOG0705|consen 446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILAS 482 (749)
T ss_pred ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 589998765 999999999999999999998877654
No 324
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=82.47 E-value=1.1 Score=44.81 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=42.4
Q ss_pred CCCCchhhhhhhccc--chhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1148 NNWKPDQVADWLKGL--DVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGL--d~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
..|+.++|..||.-. ..+|.. .+..-+++|++|-.|+.+|+...- -..|+ ++.+-++.||.
T Consensus 11 ~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~edF~~r~-p~~Gd--iL~~hL~~lk~ 73 (76)
T cd08532 11 YQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEEDFRRRA-PQGGD--TLHAQLDIWKS 73 (76)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHHHHHHHc-CCchh--HHHHHHHHHHH
Confidence 459999999999721 111222 366669999999999999976652 22553 56677777765
No 325
>KOG4236|consensus
Probab=82.39 E-value=1.5 Score=56.55 Aligned_cols=96 Identities=16% Similarity=0.267 Sum_probs=71.4
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCC-cEEEecc-----cccCcceeEEEEcCCeEE
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAV-----EVKSRKYALKIYHTGTTF 1931 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g-~tVs~a~-----e~ksRk~aFkI~~~~rty 1931 (2182)
++||+..-..+- ..-||.|..|+..|+..|.++.....-..|+|.. ..|+... -.+..+|||+|.+...+|
T Consensus 415 kEGWmvHyt~~d---~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~~vy 491 (888)
T KOG4236|consen 415 KEGWMVHYTSKD---NLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTATTVY 491 (888)
T ss_pred hcceEEEEechh---hhhhhhhheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeeeEEE
Confidence 699997655421 2345667789999999999987777777899988 6666542 234569999999998555
Q ss_pred EEEcCC------------HHHHHHHHHHHHHHhhhcCC
Q psy84 1932 YLSADS------------QDEFSSWLGCLSQATIAHDR 1957 (2182)
Q Consensus 1932 yFsAdS------------eeEm~~WI~AL~~As~~~~~ 1957 (2182)
| ..++ .+..+.|-.||+.|.+.-..
T Consensus 492 f-Vge~p~~~~~~~~g~g~d~a~~w~~ai~~alMpV~p 528 (888)
T KOG4236|consen 492 F-VGENPSSTPGGESGVGLDAAQGWETAIQQALMPVTP 528 (888)
T ss_pred E-ecCCCCCCccccccccchhhccCchhhhhccccccc
Confidence 4 4555 67799999999999876543
No 326
>KOG3930|consensus
Probab=82.27 E-value=0.97 Score=54.68 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=45.6
Q ss_pred HHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1166 IHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1166 l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
-..|...|..|.|.-+-||.|+.+-|.||||+-+|++-.||+-++..|.
T Consensus 18 A~~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K~v~~ 66 (389)
T KOG3930|consen 18 AKKYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIKAVKS 66 (389)
T ss_pred HhhHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999998888775
No 327
>PF06663 DUF1170: Protein of unknown function (DUF1170); InterPro: IPR010599 This region of unknown function is situated between the IPR001478 from INTERPRO and IPR001849 from INTERPRO domains in a cytoplasmic and membrane associated protein which appears to function as an adapter protein or regulator of Ras signalling pathways [].; GO: 0009966 regulation of signal transduction, 0005737 cytoplasm, 0016020 membrane
Probab=81.90 E-value=2.8 Score=48.16 Aligned_cols=96 Identities=19% Similarity=0.096 Sum_probs=61.9
Q ss_pred cCCCCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCcchhccccccccccCCCCCCCCCCCCCCCCCCchhhh
Q psy84 316 KITPPRISHFDIKPLGHALVNSVTSFTKNRKPLSGSFENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEE 395 (2182)
Q Consensus 316 ~l~~Pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~ 395 (2182)
+...||++ ..++.++- +.- ..+++++. .+.-.|+||||+ |....++..++|.
T Consensus 23 ~PY~PRde-~g~~~~~~------~~r--~~~~~~~~-kGSESPNSfLDq--------E~rrrfti~e~d~---------- 74 (189)
T PF06663_consen 23 VPYTPRDE-KGSFSYED------SSR--PKQGLPGS-KGSESPNSFLDQ--------ESRRRFTIAESDQ---------- 74 (189)
T ss_pred CCCCCccc-cCCcccCc------ccc--cccCCCCC-CCCCCCccccch--------hhccccccccccc----------
Confidence 56788877 66666621 222 22334332 244578999999 6777777763222
Q ss_pred ccCCCCccccccCCCCCccccccccccCCCCCCCCCCCCCch--hhhhHhhhccccc
Q psy84 396 ESISSPTSVRLYHPKPRLPVQRRATITGTGASPTSKRAPLNL--EQLWHELKLEKEW 450 (2182)
Q Consensus 396 ~~~~~p~~~rly~~kpr~~~qrr~t~~~~~~~~~~k~~~~~~--~~~w~~~~~~~~~ 450 (2182)
.|. +.-+.+.| ...||..-| ...+|.+||+| ++.|.........
T Consensus 75 ----~~~--g~~~e~~~-~~~k~Re~t----ps~GkpRPlSMP~e~~w~g~~~~~~~ 120 (189)
T PF06663_consen 75 ----LPY--GYEYEANR-LPPKRREKT----PSYGKPRPLSMPVEYNWVGDVDPPSK 120 (189)
T ss_pred ----CCc--CCcccccC-cccccccCC----cccCCccccccccccccccccCcccc
Confidence 222 44567778 555555555 67899999999 8899988877665
No 328
>KOG4236|consensus
Probab=81.32 E-value=1.9 Score=55.59 Aligned_cols=93 Identities=17% Similarity=0.291 Sum_probs=68.7
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCcceEEEEcCC-cEEEecc-----ccCCCcceEEEEeCCeEE
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAV-----EVKSRKYALKIYHTGTTF 785 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkGsI~L~g-~tV~~~~-----d~ksRk~aFkL~~~~rty 785 (2182)
++||+..-..+-. .-||-|..|...++..|.+.....--..|+|.. ..|.... -.+..+|||+|.+.. +.
T Consensus 415 kEGWmvHyt~~d~---lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~-~v 490 (888)
T KOG4236|consen 415 KEGWMVHYTSKDN---LRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT-TV 490 (888)
T ss_pred hcceEEEEechhh---hhhhhhheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee-EE
Confidence 6999876654432 456777889999999999987777777899887 3344332 124568999999887 55
Q ss_pred EEEcCC------------HHHHHHHHHHHHHhhhh
Q psy84 786 YLSADS------------QDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 786 yFaAdS------------eeEme~WI~AL~~As~~ 808 (2182)
||.-++ .+..+.|-.||++|.+.
T Consensus 491 yfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alMp 525 (888)
T KOG4236|consen 491 YFVGENPSSTPGGESGVGLDAAQGWETAIQQALMP 525 (888)
T ss_pred EEecCCCCCCccccccccchhhccCchhhhhcccc
Confidence 555555 66689999999999873
No 329
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=81.18 E-value=1.5 Score=43.45 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=43.4
Q ss_pred CCCCchhhhhhhc------ccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1148 NNWKPDQVADWLK------GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1148 ~sWs~dQVv~WLk------GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
..|+.++|..||. +|++. .|...+|+|++|-.|+.+|...+-=...| +++++-+++||.
T Consensus 5 ~~Wt~~~V~~WL~Wa~~ef~L~~v------~~~~F~m~Gk~LC~ls~edF~~~~p~~~G--dIL~~hL~~L~k 69 (71)
T cd08533 5 RLWTETHVRQWLLWAVNEFSLEGV------NFQKFCMSGRDLCALGKERFLELAPDFVG--DILWEHLEILQK 69 (71)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCC------CcccCCCCHHHHHcCCHHHHHHHcCCCcc--hHHHHHHHHHHh
Confidence 4599999999997 33211 35566999999999999997766322345 467788888875
No 330
>KOG3930|consensus
Probab=80.95 E-value=1.2 Score=53.96 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=45.5
Q ss_pred hhhhHHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHHh
Q psy84 25 IHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 73 (2182)
Q Consensus 25 l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr~ 73 (2182)
-..|...|..|.|.-+-||.|+.+-|.||||+-+|.+-.||+-++..|.
T Consensus 18 A~~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K~v~~ 66 (389)
T KOG3930|consen 18 AKKYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIKAVKS 66 (389)
T ss_pred HhhHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999998888773
No 331
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=80.80 E-value=0.69 Score=45.28 Aligned_cols=58 Identities=21% Similarity=0.508 Sum_probs=38.1
Q ss_pred CCCCchhhhhhhcccchhHHHh--H---HHHhhccCCchhhhCCChhhhhc-cCCcccchHHHHHHHHHHH
Q psy84 1148 NNWKPDQVADWLKGLDVSIHRY--V---ESFLNNHVNGQHLLNLQPDDLEH-HGICKVGHQEIILEAVDHL 1212 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGLd~~l~~Y--~---~~F~~~~I~G~~LL~L~~~dL~~-LGV~~iGHre~ILeaV~~L 1212 (2182)
..|+.+||..||.-. +.+| . -.|...+|+|++|..|+.+|+.+ .+. .|+ ++.+.++.|
T Consensus 3 ~~Wt~~~V~~Wl~w~---~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~~p~--~Gd--iL~~~l~~~ 66 (68)
T cd08757 3 QYWTKNDVLEWLQFV---AEQNKLDAECISFQKFNIDGQTLCSMTEEEFREAAGS--YGS--LLYAELQRL 66 (68)
T ss_pred hhCCHHHHHHHHHHH---HHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHHcCC--cHH--HHHHHHHHH
Confidence 369999999999722 1111 0 02555699999999999999655 443 454 344555444
No 332
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=80.23 E-value=9 Score=42.31 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=46.1
Q ss_pred eeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCCc------ceEEEEcCCcEEEecc------------------
Q psy84 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTK------AHLFIYLPGFTVAPAV------------------ 767 (2182)
Q Consensus 712 keGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dkk------pkGsI~L~g~tV~~~~------------------ 767 (2182)
++|=|.+++.... .|-.-.+.|=|+.|..-|-+...+ .+.-|+|+--.|...+
T Consensus 3 ~~G~L~Rk~~~~~---~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~~~ 79 (135)
T PF15405_consen 3 YKGDLKRKGDNSF---NWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSLIS 79 (135)
T ss_dssp -----------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS---------S----
T ss_pred ccccccccccccc---ccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCccC
Confidence 5788888887654 688888888888888877642111 1113666543333210
Q ss_pred --------------ccCCCcceEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHh
Q psy84 768 --------------EVKSRKYALKIYHTG---TTFYLSADSQDEFSSWLGCLSQA 805 (2182)
Q Consensus 768 --------------d~ksRk~aFkL~~~~---rtyyFaAdSeeEme~WI~AL~~A 805 (2182)
......|.|.+.|-| ..|.|.|+|+.+++.|++.|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 80 SSSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp ---SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 112346889998887 36799999999999999999875
No 333
>KOG4371|consensus
Probab=79.62 E-value=1.9 Score=58.88 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=71.8
Q ss_pred ccceEEEeeeCCCCCcceEEEec-CCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEE
Q psy84 200 SSLDLATLKKRPGEHLGFCIIPS-FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIF 278 (2182)
Q Consensus 200 a~l~~V~L~K~~~e~LG~~I~~~-~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~Vt 278 (2182)
+-|..|.|.|++-.++|+....- -.|.+||.-|.-.+.|..-|++++||.++...|+.|.|..+-.++..|+-..+.|.
T Consensus 1244 ~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~ 1323 (1332)
T KOG4371|consen 1244 APLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQ 1323 (1332)
T ss_pred chhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchh
Confidence 55778888988988999987654 56777999999999999999999999999999999999999999999887677776
Q ss_pred EEEE
Q psy84 279 LTLK 282 (2182)
Q Consensus 279 L~lk 282 (2182)
+++.
T Consensus 1324 ~~~~ 1327 (1332)
T KOG4371|consen 1324 ITVT 1327 (1332)
T ss_pred heeh
Confidence 6663
No 334
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=79.61 E-value=2.3 Score=42.74 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=46.4
Q ss_pred ccCCCCCHHHHHHHHhhccchhhhh---HHhHhhcccCchhhcCCChhhhhccCCcchhHHHHHHHHHHHHH
Q psy84 4 VNVADWKPDQVADWLKGLDVSIHRY---VESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72 (2182)
Q Consensus 4 ~~V~~Ws~~qV~~WL~GLd~~l~~Y---~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~IL~aV~~Lr 72 (2182)
.....||..||.+||.-.-+. .+| --.|.+-+++|++|-+|..+++..+-.. +|+. +.+-++.|+
T Consensus 8 ~~Pq~Wtk~qVleWL~~~~e~-n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p-~Gdi--Ly~~L~~l~ 75 (78)
T cd08537 8 EEPQFWTKTQVLEWISYHVEK-NKYDASSIDFSRCDMDGATLCNCALDQMRLVFGP-LGDQ--LYAQLRELT 75 (78)
T ss_pred CCcccccHHHHHHHHHHHHHh-ccCCcccCCHHHhCCchHHHHccCHHHHHHHcCC-hHHH--HHHHHHHHh
Confidence 356789999999999833100 111 1136667999999999999998777777 8874 566666665
No 335
>KOG2070|consensus
Probab=79.25 E-value=7.1 Score=50.10 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=75.4
Q ss_pred cccCCCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCC---CccceeEecCCcEEEecccccCcceeEEEEc
Q psy84 1850 VKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS---TKAHLFIYLPGFTVAPAVEVKSRKYALKIYH 1926 (2182)
Q Consensus 1850 ~~~Lg~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d---~kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~ 1926 (2182)
+..+|.+.+-|-...+.++ -.=+-|||+|-.+.|.++.-... ---.|-+++.|+.|...++....+.+|.|..
T Consensus 304 ~s~lG~iiymg~v~Vqy~~----ad~~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte~~~nafeis~ 379 (661)
T KOG2070|consen 304 ISTLGNIIYMGQVLVQYAG----ADEKDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTENHRNAFEISG 379 (661)
T ss_pred hhhccceEeeeehhhhhcC----cchhhheeeeccceeeeeEeccccchhhhccccccceeEEeehhhhhcccccccccc
Confidence 4557777777776655442 13458999999888888776532 2346789999999998877777889999988
Q ss_pred CC-eEEEEEcCCHHHHHHHHHHHHH
Q psy84 1927 TG-TTFYLSADSQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1927 ~~-rtyyFsAdSeeEm~~WI~AL~~ 1950 (2182)
.- ......|+.+.++++|+.+++.
T Consensus 380 ~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 380 STIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred cchhheeeccCChHHHHHHHHHhhh
Confidence 77 6778899999999999999996
No 336
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=78.99 E-value=2 Score=42.26 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=41.8
Q ss_pred CCCCchhhhhhhcccchhHHHhH---HHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1148 NNWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
..|+.++|..||.-. +.+|. -.|...+++|++|-.|+.+|+... +-..| .++.+-+++||.
T Consensus 4 ~~Wt~~~V~~WL~wa---~~ef~L~~i~~~~F~mnGk~LC~ls~edF~~r-~p~~G--diL~~hL~~L~~ 67 (68)
T cd08535 4 RYWSRDDVLQWLRWA---ENEFSLPPIDSNTFEMNGKALCLLTKEDFRYR-SPHSG--DVLYELLQHLLK 67 (68)
T ss_pred hhCCHHHHHHHHHHH---HHhcCCCCCChhccCCCHHHHhcCCHHHHhhh-CCCch--HHHHHHHHHHHh
Confidence 459999999999711 11220 125566899999999999997654 22344 466677777764
No 337
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=78.19 E-value=2.1 Score=41.74 Aligned_cols=60 Identities=27% Similarity=0.447 Sum_probs=39.3
Q ss_pred CCCCchhhhhhhcccc--hhHHHhHHHHhhccCCchhhhCCChhhhhcc-CCcccchHHHHHHHHHHHH
Q psy84 1148 NNWKPDQVADWLKGLD--VSIHRYVESFLNNHVNGQHLLNLQPDDLEHH-GICKVGHQEIILEAVDHLR 1213 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGLd--~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~L-GV~~iGHre~ILeaV~~Lr 1213 (2182)
..|+.++|..||.-.- .+|.. -.+..-.++|++|..|+.+|+.+. +. .| .++.+.++.|+
T Consensus 3 ~~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~edF~~~~p~--~G--diL~~hL~~l~ 65 (66)
T cd08203 3 RLWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTKEDFLRRAPS--GG--DILYEHLQLLR 65 (66)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCHHHHHHHcCC--cH--HHHHHHHHHHh
Confidence 3699999999997210 11111 134555999999999999996553 33 44 34556666554
No 338
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=77.84 E-value=1.2 Score=45.19 Aligned_cols=61 Identities=20% Similarity=0.460 Sum_probs=41.8
Q ss_pred CCCCchhhhhhhcccchhHHHhH---HHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1148 NNWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
..|+.++|..||.-. +.+|. -.|...+|+|++|..|+.+|+..+-= ..| .++++-++.||.
T Consensus 18 ~~Wt~~~V~~Wl~w~---~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p-~~G--diL~~hL~~Lk~ 81 (82)
T smart00251 18 QLWTEDHVLEWLEWA---VKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP-FGG--DILWSHLQILRK 81 (82)
T ss_pred hhCCHHHHHHHHHHH---HHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC-Cch--HHHHHHHHHHHh
Confidence 459999999999722 12221 12555689999999999999655421 334 567777777763
No 339
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=77.82 E-value=1.3 Score=44.62 Aligned_cols=62 Identities=23% Similarity=0.500 Sum_probs=42.3
Q ss_pred CCcCCCCchhhhhhhc------ccchhHHHhHHHHhhccCCchhhhCCChhhhhc-cCCcccchHHHHHHHHHHHHh
Q psy84 1145 TPINNWKPDQVADWLK------GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEH-HGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1145 ~PI~sWs~dQVv~WLk------GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~-LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
.....|+.+||..||. +|+.. .-.|...+|+|++|-.|+++|+.+ .|. .|+ .+...+..|+-
T Consensus 5 ~dP~~Ws~~~V~~WL~Wav~ef~L~~~----~i~~~~f~m~Gk~LC~ms~eeF~~~~p~--~Gd--vLy~~lq~~~~ 73 (78)
T cd08538 5 VHPEYWTKRHVWEWLQFCCDQYKLDAN----CISFCHFNISGLQLCSMTQEEFIEAAGI--CGE--YLYFILQNIRT 73 (78)
T ss_pred CCccccCHHHHHHHHHHHHHHcCCCcc----ccchhhcCCCHHHHHcCCHHHHHHHccc--chH--HHHHHHHHHHh
Confidence 3446799999999997 44431 014777799999999999999544 443 454 34455555543
No 340
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=76.38 E-value=2.8 Score=43.28 Aligned_cols=61 Identities=20% Similarity=0.401 Sum_probs=44.6
Q ss_pred CCCCchhhhhhhc------ccchhHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHhhh
Q psy84 1148 NNWKPDQVADWLK------GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFH 1216 (2182)
Q Consensus 1148 ~sWs~dQVv~WLk------GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~~~ 1216 (2182)
..|+.++|..||. +|+. + .+...+++|++|-.|+.+|+..+-=... -+++++-+++||...
T Consensus 20 ~~Wt~~~V~~WL~Wa~~ef~L~~-----v-~~~~F~m~Gk~LC~Ls~edF~~r~p~~~--GdiL~~hLe~Lrk~~ 86 (89)
T cd08534 20 MEWTEDQVLHWVVWAVKEFSLTD-----I-DLSDWNITGRELCSLTQEEFFQRVPKDP--GDIFWTHLELLRKCK 86 (89)
T ss_pred HHcCHHHHHHHHHHHHHHcCCCC-----C-ChhhcCCCHHHHhcCCHHHHHHHcCCCc--cHHHHHHHHHHHHcc
Confidence 4699999999997 3431 1 3556689999999999999766422223 357888889888643
No 341
>KOG0792|consensus
Probab=76.10 E-value=1.4 Score=60.59 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=58.0
Q ss_pred EEeeeCCCCCcceEEEecCCc-------ceEEeccC-------------CCChhhhcC-CcCCCCeEEEECCeEecCCCH
Q psy84 205 ATLKKRPGEHLGFCIIPSFHG-------IHQIGDIK-------------CNSTAYQSG-KIECGDEIVQINYQTVVGWDV 263 (2182)
Q Consensus 205 V~L~K~~~e~LG~~I~~~~~g-------~h~VsrI~-------------~gsPAd~sg-~L~~GDEIvqVNGq~VvGw~h 263 (2182)
+.|...+.+.+||.++++.+- ...++|+. ++++||.|. .+..||+++.|||..+....|
T Consensus 708 ~~~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~ 787 (1144)
T KOG0792|consen 708 SYLAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEH 787 (1144)
T ss_pred cccccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccc
Confidence 333333466899999977433 34789999 999999888 999999999999999999999
Q ss_pred HHHHHHHHhCC
Q psy84 264 KQVMALFEESS 274 (2182)
Q Consensus 264 ~eVv~lLr~s~ 274 (2182)
+.+|.+|+...
T Consensus 788 ~~~vs~irs~r 798 (1144)
T KOG0792|consen 788 DQVVSLIRSPR 798 (1144)
T ss_pred cchHHHHhhhh
Confidence 99999998763
No 342
>KOG4371|consensus
Probab=76.03 E-value=2.8 Score=57.44 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=67.4
Q ss_pred ccceeeEeecCCCCCcceEEEec-CCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEE
Q psy84 1341 SSLDLATLKKRPGEHLGFCIIPS-FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIF 1419 (2182)
Q Consensus 1341 a~le~V~L~K~~~e~LG~~I~s~-~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vt 1419 (2182)
+.|..|-|+|++-.++|+....- ..|.+||.-|...+.|..-|++++||.++...||.|.|..+...+..|+-.-+-+.
T Consensus 1244 ~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~ 1323 (1332)
T KOG4371|consen 1244 APLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQ 1323 (1332)
T ss_pred chhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchh
Confidence 45667888888878899987655 57778999999999999999999999999999999999999999888875444444
Q ss_pred EE
Q psy84 1420 LT 1421 (2182)
Q Consensus 1420 L~ 1421 (2182)
++
T Consensus 1324 ~~ 1325 (1332)
T KOG4371|consen 1324 IT 1325 (1332)
T ss_pred he
Confidence 43
No 343
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=75.79 E-value=2.7 Score=43.35 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=43.7
Q ss_pred CCCCchhhhhhhcccchhHHHhH---HHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHhh
Q psy84 1148 NNWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNF 1215 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~~ 1215 (2182)
..|+.++|..||.-. +.+|. -.|...+|+|++|-.|+.+|..++-=.-.| +++++-+++||.-
T Consensus 20 ~~Wt~~~V~~WL~Wa---~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~~~G--dIL~~HL~~L~k~ 85 (88)
T cd08542 20 RQWTETHVRDWVMWA---VNEFSLKGVDFQKFCMNGAALCALGKECFLELAPDFVG--DILWEHLEILQKE 85 (88)
T ss_pred hhCCHHHHHHHHHHH---HHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCCCcc--HHHHHHHHHHHHh
Confidence 569999999999711 11220 135566899999999999997554322244 5778888888753
No 344
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=73.76 E-value=16 Score=40.46 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=45.7
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCc------cceeEecCCcEEEec-------------------
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTK------AHLFIYLPGFTVAPA------------------- 1912 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~k------p~GsI~L~g~tVs~a------------------- 1912 (2182)
++|=|.|++.. ...|-.=.+.|=|+.|..=|.+...+ .+-.|+|+=-.|+..
T Consensus 3 ~~G~L~Rk~~~---~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~~~ 79 (135)
T PF15405_consen 3 YKGDLKRKGDN---SFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSLIS 79 (135)
T ss_dssp -----------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS---------S----
T ss_pred ccccccccccc---ccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCccC
Confidence 67888887763 34687888888888877776552111 123455543222210
Q ss_pred -------------ccccCcceeEEEEcCC---eEEEEEcCCHHHHHHHHHHHHHH
Q psy84 1913 -------------VEVKSRKYALKIYHTG---TTFYLSADSQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1913 -------------~e~ksRk~aFkI~~~~---rtyyFsAdSeeEm~~WI~AL~~A 1951 (2182)
.......|.|++.|-| ..|.|.|+|+.++++|++.|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 80 SSSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp ---SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 0112357889999887 46789999999999999999875
No 345
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=73.45 E-value=3.3 Score=42.74 Aligned_cols=62 Identities=26% Similarity=0.410 Sum_probs=42.5
Q ss_pred CCCCchhhhhhhcccchhHHHhH---HHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1148 NNWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1148 ~sWs~dQVv~WLkGLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
..|+.++|..||.-. +.+|. -.|...+|+|++|-.|+++|+..+-=.-.| +++++-+++|+.
T Consensus 20 ~~Wt~~~V~~WL~Wa---~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~ap~~~G--dIL~~HL~~l~k 84 (89)
T cd08543 20 WLWTEQQVCQWLLWA---TNEFSLVNVNFQQFGMNGQELCNLGKERFLELAPDFVG--DILWEHLEQMIK 84 (89)
T ss_pred hhCCHHHHHHHHHHH---HHHcCCCCCCcccCCCChHHHHcCCHHHHHhHcCCCcc--hHHHHHHHHHHH
Confidence 569999999999721 11220 135566899999999999997654322244 466777777765
No 346
>KOG1320|consensus
Probab=72.54 E-value=7 Score=50.87 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=46.5
Q ss_pred ceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCCcEEEEEEeCC
Q psy84 1367 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426 (2182)
Q Consensus 1367 ~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~~vtL~LKkrP 1426 (2182)
..+|+.+.+++|+++-+ +..||.|+.|||+.|.+. ++|..+|+++..+-+|.+..++
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~ 455 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRR 455 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEec
Confidence 35899999999997665 999999999999999865 5689999998765566665555
No 347
>KOG2070|consensus
Probab=71.75 E-value=15 Score=47.49 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=61.4
Q ss_pred ceeEEEEEeCCeEEEEecCCCC--c-ceEEEEcCCcEEEeccccCCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHH
Q psy84 729 WIRGWFIIKGNHFYGFTDKDST--K-AHLFIYLPGFTVAPAVEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQ 804 (2182)
Q Consensus 729 WKKRWFVLkd~~LyYYKdk~dk--k-pkGsI~L~g~tV~~~~d~ksRk~aFkL~~~~-rtyyFaAdSeeEme~WI~AL~~ 804 (2182)
-+.|||+|=.+.|.++.-.... . -.|-+++.|+.|...++......+|+|...- .-....|..+.++++|+.+|+.
T Consensus 325 ~~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 325 EKDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred hhhheeeeccceeeeeEeccccchhhhccccccceeEEeehhhhhcccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 4589999988887777653221 1 2356899999999888887789999998776 6778899999999999999996
No 348
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.81 E-value=6.9 Score=48.84 Aligned_cols=63 Identities=24% Similarity=0.349 Sum_probs=46.6
Q ss_pred cceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEEEEEec
Q psy84 215 LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKKR 284 (2182)
Q Consensus 215 LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL~lkkr 284 (2182)
+|+. ...| .+|..+.+++||++.| |..||.|+.|||+.|. ...++...+... +..+.+++.+.
T Consensus 264 ~g~~---~~~G-~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~ 328 (347)
T COG0265 264 LGLP---VAAG-AVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRG 328 (347)
T ss_pred cCCC---CCCc-eEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEEC
Confidence 6754 3456 6999999999999885 8899999999999996 344455555443 45677777544
No 349
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=69.56 E-value=21 Score=39.87 Aligned_cols=81 Identities=11% Similarity=0.248 Sum_probs=58.1
Q ss_pred CCcee----EEEEEeCCeEEEEecCCC--Ccc-----------------eEEEEcCCcEEEec--cccCCCcceEEEEeC
Q psy84 727 PQWIR----GWFIIKGNHFYGFTDKDS--TKA-----------------HLFIYLPGFTVAPA--VEVKSRKYALKIYHT 781 (2182)
Q Consensus 727 k~WKK----RWFVLkd~~LyYYKdk~d--kkp-----------------kGsI~L~g~tV~~~--~d~ksRk~aFkL~~~ 781 (2182)
+.||| --||++.-..++||+... ++- +..|++....|... .+. ...+.|+|.|.
T Consensus 43 gk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~-e~~~vwEliH~ 121 (160)
T cd01255 43 GKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADM-ESNFLWELIHL 121 (160)
T ss_pred ccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCc-ccceEEEEEee
Confidence 34665 568899988889988422 111 22577776666554 222 25789999985
Q ss_pred C--------eEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy84 782 G--------TTFYLSADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 782 ~--------rtyyFaAdSeeEme~WI~AL~~As~~ 808 (2182)
. ++|.|||.+.+.....|.++++....
T Consensus 122 kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 122 KSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred cccccCCCcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 2 69999999999999999999987653
No 350
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.25 E-value=51 Score=36.67 Aligned_cols=78 Identities=8% Similarity=0.225 Sum_probs=50.6
Q ss_pred eeEEEEEeCCeEEEEecCCCC-----cc----eEEEEcCCcEEEeccccCCCcceEEEEeCC--eEEEEEcCCHHHHHHH
Q psy84 730 IRGWFIIKGNHFYGFTDKDST-----KA----HLFIYLPGFTVAPAVEVKSRKYALKIYHTG--TTFYLSADSQDEFSSW 798 (2182)
Q Consensus 730 KKRWFVLkd~~LyYYKdk~dk-----kp----kGsI~L~g~tV~~~~d~ksRk~aFkL~~~~--rtyyFaAdSeeEme~W 798 (2182)
+.|..-|=+..+.+-|-..+. .+ +..|.+....+. +...+....|+|...+ ..|.|.|.|.+..+.|
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglt--e~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~W 107 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGIT--ENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAW 107 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeeccccc--ccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHH
Confidence 456655656666655543221 11 234555443333 2333345678888776 7999999999999999
Q ss_pred HHHHHHhhhhc
Q psy84 799 LGCLSQATIAH 809 (2182)
Q Consensus 799 I~AL~~As~~~ 809 (2182)
+..|++.....
T Consensus 108 v~~I~~iL~~Q 118 (133)
T cd01227 108 VNEIRKVLTSQ 118 (133)
T ss_pred HHHHHHHHHHH
Confidence 99999887743
No 351
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=69.14 E-value=10 Score=47.33 Aligned_cols=63 Identities=24% Similarity=0.349 Sum_probs=46.3
Q ss_pred cceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEeC
Q psy84 1356 LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKKR 1425 (2182)
Q Consensus 1356 LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKkr 1425 (2182)
+|+. ...| .+|..+.+++||.+.| |..||.|+.|||+.|. ...++...+... +..+.+++-+.
T Consensus 264 ~g~~---~~~G-~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~ 328 (347)
T COG0265 264 LGLP---VAAG-AVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRG 328 (347)
T ss_pred cCCC---CCCc-eEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEEC
Confidence 6754 3456 6999999999998887 8899999999999995 344555555554 34566665433
No 352
>KOG0792|consensus
Probab=69.01 E-value=2.6 Score=58.04 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=60.8
Q ss_pred ccceeeEeecCCCCCcceEEEecCC-------cceEEeccC-------------CCChhhhcC-cccCCCeEEEECCeEe
Q psy84 1341 SSLDLATLKKRPGEHLGFCIIPSFH-------GIHQIGDIK-------------CNSTAYQSG-KIECGDEIVQINYQTV 1399 (2182)
Q Consensus 1341 a~le~V~L~K~~~e~LG~~I~s~~~-------G~h~Is~I~-------------~gSPAd~~g-~L~~GDeIvQVNGq~V 1399 (2182)
+..+.+.|..++.+.+||.+++..+ -...++++. ++++||.|. .+..||+++.|||..+
T Consensus 703 ~~pd~~~~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~ 782 (1144)
T KOG0792|consen 703 ARPDESYLAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDV 782 (1144)
T ss_pred cCCcccccccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeeccccc
Confidence 3333455655557789999998843 235789999 999998888 9999999999999999
Q ss_pred cCCCHHHHHHHHHhc
Q psy84 1400 VGWDVKQVMALFEES 1414 (2182)
Q Consensus 1400 vGw~h~~Vv~~Lre~ 1414 (2182)
-...|+.||.+|+..
T Consensus 783 ~~~~~~~~vs~irs~ 797 (1144)
T KOG0792|consen 783 SESEHDQVVSLIRSP 797 (1144)
T ss_pred ccccccchHHHHhhh
Confidence 999999999998874
No 353
>KOG4047|consensus
Probab=67.04 E-value=3.2 Score=53.19 Aligned_cols=98 Identities=9% Similarity=0.039 Sum_probs=61.6
Q ss_pred CCCceEEEEEeecCCCCCCCCceEEEEEEeCCe------EEEEecCCCC-------ccceeEecCC-cEEEecccc--cC
Q psy84 1854 VMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNH------FYGFTDKDST-------KAHLFIYLPG-FTVAPAVEV--KS 1917 (2182)
Q Consensus 1854 g~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~------LyYYKde~d~-------kp~GsI~L~g-~tVs~a~e~--ks 1917 (2182)
+..+++|+++-+..+ .+.|+|.++|.+|..+. |-.|..+... ....+|.|.+ +.|+....+ .-
T Consensus 6 ~~~~k~g~~~~~~~r-~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~~~~~~~~ 84 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNK-FKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESGRRCQTGP 84 (429)
T ss_pred CcccccCccchhhhh-hccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecccccccCC
Confidence 345689999887754 36789999999998654 2233322111 1235777877 566655222 22
Q ss_pred cceeEEEEcCCeEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy84 1918 RKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIA 1954 (2182)
Q Consensus 1918 Rk~aFkI~~~~rtyyFsAdSeeEm~~WI~AL~~As~~ 1954 (2182)
..++|....... +|.|+..-+...||++|..-...
T Consensus 85 ~i~~~f~~~a~e--~~~~~q~l~~~~w~~~i~~~~~~ 119 (429)
T KOG4047|consen 85 GITAFFCDRAEE--LFNMLQDLMQANWINAIEEPAIP 119 (429)
T ss_pred CceEEEecchHH--HHHHHHHHHhhhhhhhhhhcccc
Confidence 344444433333 77788888888999999886655
No 354
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=66.21 E-value=3.5 Score=40.38 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=31.6
Q ss_pred CCCCchhhhhhhc------ccchhHHHhHHHHhhccCCchhhhCCChhhhhcc
Q psy84 1148 NNWKPDQVADWLK------GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH 1194 (2182)
Q Consensus 1148 ~sWs~dQVv~WLk------GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~L 1194 (2182)
..|+.++|..||. +|+.. .+....++|++|..|+.++....
T Consensus 3 ~~Ws~~~V~~WL~w~~~ef~L~~~------~~~~F~m~Gk~LC~ls~edF~~r 49 (66)
T cd08536 3 RSWSREHVRTWLRWVSARYQLEVV------DLDKFLMNGKGLCLMSLEGFLYR 49 (66)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCC------CccccCCCHHHHHcCCHHHHHhh
Confidence 4699999999997 44321 34455799999999999996654
No 355
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=63.09 E-value=12 Score=45.87 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=37.6
Q ss_pred CcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CCcEEEEEEe
Q psy84 1355 HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 1424 (2182)
Q Consensus 1355 ~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~~vtL~LKk 1424 (2182)
-.|+.|..+.+... -....|+.||.+++|||+.+. +..+..+++++. ..+++|+|.+
T Consensus 206 l~GYrl~Pgkd~~l-----------F~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeR 264 (276)
T PRK09681 206 IVGYAVKPGADRSL-----------FDASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLR 264 (276)
T ss_pred ceEEEECCCCcHHH-----------HHHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEE
Confidence 45777766544322 244469999999999999996 444444444443 3677888764
No 356
>KOG0517|consensus
Probab=62.84 E-value=0.35 Score=68.32 Aligned_cols=97 Identities=18% Similarity=0.272 Sum_probs=72.7
Q ss_pred CeeEEEEeecCCC-----CCCCCceeEEEEEeCCeEEEEecCCCCcceE--------EEEcCCcEEEeccccCCCcceEE
Q psy84 711 DCEGWLFQRDRKI-----STVPQWIRGWFIIKGNHFYGFTDKDSTKAHL--------FIYLPGFTVAPAVEVKSRKYALK 777 (2182)
Q Consensus 711 dkeGWL~Kkg~~~-----~~~k~WKKRWFVLkd~~LyYYKdk~dkkpkG--------sI~L~g~tV~~~~d~ksRk~aFk 777 (2182)
.++|+|+++--.+ .+.+.|..-||++..+.|.+|||.+...... .+.+..+.|....+...+++.|.
T Consensus 2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~~ 2379 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVFL 2379 (2473)
T ss_pred HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhhh
Confidence 4689997654221 1458999999999999999999954332221 24444465565556666899999
Q ss_pred EEeCC-eEEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 778 IYHTG-TTFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 778 L~~~~-rtyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
|..+. ..|.|.|.++++|+.|+.++..+..
T Consensus 2380 l~~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2380 LQLPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred hcCCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 99776 8999999999999999999887775
No 357
>PF15411 PH_10: Pleckstrin homology domain
Probab=62.48 E-value=57 Score=35.43 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred CeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCCC-------------cceEEEEcCC----cEE-EeccccCCC
Q psy84 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDST-------------KAHLFIYLPG----FTV-APAVEVKSR 772 (2182)
Q Consensus 711 dkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~dk-------------kpkGsI~L~g----~tV-~~~~d~ksR 772 (2182)
-+.|-+..... ..|+.+.+.|=...|..+|+.... .....+.|.| ..| .+.......
T Consensus 8 ll~g~~~V~k~-----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g 82 (116)
T PF15411_consen 8 LLHGTLTVGKD-----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPG 82 (116)
T ss_pred EEccEEEEEeC-----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCC
Confidence 35566666543 369999999999999999884221 1122344444 011 111222335
Q ss_pred cceEEEEeC---C-eEEEEEcCCHHHHHHHHHHH
Q psy84 773 KYALKIYHT---G-TTFYLSADSQDEFSSWLGCL 802 (2182)
Q Consensus 773 k~aFkL~~~---~-rtyyFaAdSeeEme~WI~AL 802 (2182)
.|...|... + ..|.|.+.+++.|+.|-.+|
T Consensus 83 ~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 83 SYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred ceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 688888873 3 79999999999999998875
No 358
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=61.27 E-value=21 Score=43.94 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=30.6
Q ss_pred hcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEEEEEe
Q psy84 240 QSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFLTLKK 283 (2182)
Q Consensus 240 ~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL~lkk 283 (2182)
..-+|+.||.+++|||+.+. ...+..+++.+. ..+++|+|.+
T Consensus 221 ~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeR 264 (276)
T PRK09681 221 DASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLR 264 (276)
T ss_pred HHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEE
Confidence 34579999999999999997 445444454443 5678888854
No 359
>KOG1421|consensus
Probab=60.91 E-value=14 Score=49.24 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=44.3
Q ss_pred CCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC-CCcEEEEEE
Q psy84 223 FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLK 282 (2182)
Q Consensus 223 ~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s-~~~VtL~lk 282 (2182)
..|..+|.++.++|||+. +|++||.++.||+.++. +-.++-++|-+. +..+.|++.
T Consensus 301 ~tgmLvV~~vL~~gpa~k--~Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~ 357 (955)
T KOG1421|consen 301 RTGMLVVETVLPEGPAEK--KLEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQ 357 (955)
T ss_pred cceeEEEEEeccCCchhh--ccCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEE
Confidence 568889999999999995 79999999999988876 445666666554 566677764
No 360
>KOG1421|consensus
Probab=59.67 E-value=14 Score=49.18 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=43.3
Q ss_pred CCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc-CCcEEEEEE
Q psy84 1364 FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES-SSDIFLTLK 1423 (2182)
Q Consensus 1364 ~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~-~~~vtL~LK 1423 (2182)
..|..+|.++.++|||+. +|++||.++.||+.++. +-.++-++|-+. +..+.|++-
T Consensus 301 ~tgmLvV~~vL~~gpa~k--~Le~GDillavN~t~l~--df~~l~~iLDegvgk~l~LtI~ 357 (955)
T KOG1421|consen 301 RTGMLVVETVLPEGPAEK--KLEPGDILLAVNSTCLN--DFEALEQILDEGVGKNLELTIQ 357 (955)
T ss_pred cceeEEEEEeccCCchhh--ccCCCcEEEEEcceehH--HHHHHHHHHhhccCceEEEEEE
Confidence 457789999999999966 89999999999988875 445566666665 555666654
No 361
>KOG1320|consensus
Probab=58.45 E-value=17 Score=47.61 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=44.6
Q ss_pred ceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEEEecC
Q psy84 226 IHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285 (2182)
Q Consensus 226 ~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~lkkrP 285 (2182)
..+|+.|.++++++.- .+..||+|+.|||+.|.+. ++|.++|+++..+=+|.+..++
T Consensus 399 ~v~is~Vlp~~~~~~~-~~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~ 455 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGY-GLKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRR 455 (473)
T ss_pred EEEEEEeccCCCcccc-cccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEec
Confidence 3589999999999964 7999999999999999865 5588899888754444443333
No 362
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=57.33 E-value=46 Score=37.37 Aligned_cols=77 Identities=12% Similarity=0.271 Sum_probs=53.8
Q ss_pred EEEEEeCCeEEEEecCCC--Ccc-----------------ceeEecCCcEEEec--ccccCcceeEEEEcC--------C
Q psy84 1878 GWFIIKGNHFYGFTDKDS--TKA-----------------HLFIYLPGFTVAPA--VEVKSRKYALKIYHT--------G 1928 (2182)
Q Consensus 1878 RWFVLkd~~LyYYKde~d--~kp-----------------~GsI~L~g~tVs~a--~e~ksRk~aFkI~~~--------~ 1928 (2182)
-=||.+.-.++.||+... .+. +-.|++....|... .++. ..+.|.|.|. .
T Consensus 52 ~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e-~~~vwEliH~kSe~egRpE 130 (160)
T cd01255 52 MCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADME-SNFLWELIHLKSELEGRPE 130 (160)
T ss_pred EEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcc-cceEEEEEeecccccCCCc
Confidence 357888877777776522 122 22566666555543 2322 5788999885 2
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy84 1929 TTFYLSADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1929 rtyyFsAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
++|.||+.+.+..+..|..|+......
T Consensus 131 ~vfqLCcS~~E~k~~flK~Irsilre~ 157 (160)
T cd01255 131 KVFVLCCSTAESRNAFLKTIRSILRES 157 (160)
T ss_pred ceEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999876543
No 363
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=57.04 E-value=1.1e+02 Score=33.46 Aligned_cols=93 Identities=11% Similarity=0.190 Sum_probs=56.2
Q ss_pred eEEEEEEcCCCCceEEeccCCCccCCCchhHHHHHHHHHHHHHHHhhhcccCCCCceeecccCCeEEEEEEcCCCcEEEE
Q psy84 1032 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLM 1111 (2182)
Q Consensus 1032 i~~laIIGk~d~PLY~~~f~s~~~~~~~~~l~~qfi~HsSLDiIeEk~~~t~~~yLg~Ld~~e~~~VygYvT~TgiKFIL 1111 (2182)
+.+|.|+|++|.+++.+-|.... ... .+-........+..+ .+.. ..+...+++.+ .|.-..++-|++
T Consensus 2 I~~i~i~n~~G~~i~~k~y~~~~----~~~--~~~~~~~~~~~~~~~---~~~~--~~i~~~~~~~~-vy~~~~dl~~~~ 69 (141)
T PF01217_consen 2 IKAILILNSQGKRILSKYYRDVS----EEE--RQKLFEKFIKKKSSR---NSKQ--SPIFEHDNYRI-VYKRYSDLYFVV 69 (141)
T ss_dssp EEEEEEEETTSEEEEEEESSTST----SHH--HHHHHHHHHHHHHTS---SSSS--TSEEEETTEEE-EEEEETTEEEEE
T ss_pred EEEEEEEcCCCCEEEehhcCCcc----HHH--HHHHHHHHHHHHHhc---cccc--ceeeeccccee-eeEeeccEEEEE
Confidence 68999999999999999995431 111 122222222222222 1111 23333555443 777778999999
Q ss_pred EecCC-ChHHHHHHHHHHHHHHHHhh
Q psy84 1112 VHDSK-NEEGIKKFFTSVYELFIKYS 1136 (2182)
Q Consensus 1112 i~d~~-~e~~Ir~fF~~VhelYvd~v 1136 (2182)
+.+.. ++-.+-.|++.+.+++-+++
T Consensus 70 v~~~~eNel~~~e~l~~~v~~l~~~~ 95 (141)
T PF01217_consen 70 VGDENENELLLLEFLHRLVEVLDDYF 95 (141)
T ss_dssp EESSTSBHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccchHHHHHHHHHhhhhhhhhh
Confidence 99853 44456777777777777764
No 364
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=54.50 E-value=1.3e+02 Score=33.74 Aligned_cols=79 Identities=8% Similarity=0.203 Sum_probs=50.8
Q ss_pred eEEEEEEeCCeEEEEecCCCC---------ccceeEecCCcEEEecccccCcceeEEEEcCC--eEEEEEcCCHHHHHHH
Q psy84 1876 IRGWFIIKGNHFYGFTDKDST---------KAHLFIYLPGFTVAPAVEVKSRKYALKIYHTG--TTFYLSADSQDEFSSW 1944 (2182)
Q Consensus 1876 KKRWFVLkd~~LyYYKde~d~---------kp~GsI~L~g~tVs~a~e~ksRk~aFkI~~~~--rtyyFsAdSeeEm~~W 1944 (2182)
+.|+.-|=+..+.+-|-..+. .-+..|.|....+.. ...+....|.|.+.+ ..|.+.|.|.+..+.|
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte--~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~W 107 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITE--NVKGDTKKFEIWYNAREEVYILQAPTPEIKAAW 107 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccc--cCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHH
Confidence 456666666666555544211 123345555433332 223335568887665 7999999999999999
Q ss_pred HHHHHHHhhhcC
Q psy84 1945 LGCLSQATIAHD 1956 (2182)
Q Consensus 1945 I~AL~~As~~~~ 1956 (2182)
|..|+.....+.
T Consensus 108 v~~I~~iL~~Q~ 119 (133)
T cd01227 108 VNEIRKVLTSQL 119 (133)
T ss_pred HHHHHHHHHHHH
Confidence 999999876653
No 365
>KOG1264|consensus
Probab=52.96 E-value=17 Score=49.17 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=48.6
Q ss_pred CccceeEecCCcEEEec-ccccCcceeEEEEcCC---eEEEEEcCCHHHHHHHHHHHHHHhhhcCC
Q psy84 1896 TKAHLFIYLPGFTVAPA-VEVKSRKYALKIYHTG---TTFYLSADSQDEFSSWLGCLSQATIAHDR 1957 (2182)
Q Consensus 1896 ~kp~GsI~L~g~tVs~a-~e~ksRk~aFkI~~~~---rtyyFsAdSeeEm~~WI~AL~~As~~~~~ 1957 (2182)
.-++|..++..|.|... .....+.|.|.|.... ..|.|+|++.+++..|+++|+.++...+.
T Consensus 850 tl~rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~t 915 (1267)
T KOG1264|consen 850 TLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKADT 915 (1267)
T ss_pred hhhhccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhhh
Confidence 34566777777777665 4445678999997542 68889999999999999999999987664
No 366
>PF15411 PH_10: Pleckstrin homology domain
Probab=52.86 E-value=1e+02 Score=33.57 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=57.2
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCc-------------------cceeEecCC-cEEEeccccc
Q psy84 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTK-------------------AHLFIYLPG-FTVAPAVEVK 1916 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~k-------------------p~GsI~L~g-~tVs~a~e~k 1916 (2182)
-..|-+.-..+ ..|+.+.+-|=+..|..+|...... .+|.|.+.. ..|... ..
T Consensus 8 ll~g~~~V~k~-----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~--s~ 80 (116)
T PF15411_consen 8 LLHGTLTVGKD-----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSS--SK 80 (116)
T ss_pred EEccEEEEEeC-----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeecc--CC
Confidence 34555555433 3699999999999999998762211 244555554 223322 22
Q ss_pred CcceeEEEEcC---C-eEEEEEcCCHHHHHHHHHHH
Q psy84 1917 SRKYALKIYHT---G-TTFYLSADSQDEFSSWLGCL 1948 (2182)
Q Consensus 1917 sRk~aFkI~~~---~-rtyyFsAdSeeEm~~WI~AL 1948 (2182)
...|...|.-. + ..|.|...+++.|+.|-.+|
T Consensus 81 ~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 81 PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 34688888762 3 79999999999999998875
No 367
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=51.84 E-value=10 Score=38.07 Aligned_cols=64 Identities=22% Similarity=0.434 Sum_probs=45.5
Q ss_pred cCCCCchhhhhhhcccchhHHHhH---HHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1147 INNWKPDQVADWLKGLDVSIHRYV---ESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1147 I~sWs~dQVv~WLkGLd~~l~~Y~---~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
...|+-.||..||.-.-+ ..++. -.|.+-+++|+.|-.|..+++. +=+-.+|+ ++.+-++.|+-
T Consensus 5 P~~Wtk~~V~~WL~~~~~-~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~-~~~p~~Gd--iLy~~l~~~~~ 71 (74)
T cd08539 5 PQYWTKYQVWEWLQHLLD-TNQLDASCIPFQEFDINGEHLCSMSLQEFT-RAAGTAGQ--LLYSNLQHLKW 71 (74)
T ss_pred hhhCCHHHHHHHHHHHHH-HcCCCcccccHHHcCCChHHHHccCHHHHh-hcCCchHH--HHHHHHHHHhc
Confidence 356999999999983300 11221 1477779999999999999976 66666887 45577777663
No 368
>KOG4047|consensus
Probab=49.23 E-value=10 Score=48.96 Aligned_cols=97 Identities=9% Similarity=0.028 Sum_probs=58.2
Q ss_pred CCCeeEEEEeecCCCCCCCCceeEEEEEeCCe-------EEEE-ecCCCCc-----ceEEEEcCCcE-EEeccc--cCCC
Q psy84 709 MPDCEGWLFQRDRKISTVPQWIRGWFIIKGNH-------FYGF-TDKDSTK-----AHLFIYLPGFT-VAPAVE--VKSR 772 (2182)
Q Consensus 709 ~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~-------LyYY-Kdk~dkk-----pkGsI~L~g~t-V~~~~d--~ksR 772 (2182)
..+++|++..+..+.+ .+.|.++|.+|..+. +.|+ +..+... .+..+.|..|. |..+.. ....
T Consensus 7 ~~~k~g~~~~~~~r~~-~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~~~~~~~~~ 85 (429)
T KOG4047|consen 7 CLVKDGVPDNHRNKFK-VKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESGRRCQTGPG 85 (429)
T ss_pred cccccCccchhhhhhc-cccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecccccccCCC
Confidence 3568899988776644 689999999998553 2333 1111111 11356666643 333321 1223
Q ss_pred cceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy84 773 KYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIA 808 (2182)
Q Consensus 773 k~aFkL~~~~rtyyFaAdSeeEme~WI~AL~~As~~ 808 (2182)
.++|....... +|.|++.-+...||++|..-...
T Consensus 86 i~~~f~~~a~e--~~~~~q~l~~~~w~~~i~~~~~~ 119 (429)
T KOG4047|consen 86 ITAFFCDRAEE--LFNMLQDLMQANWINAIEEPAIP 119 (429)
T ss_pred ceEEEecchHH--HHHHHHHHHhhhhhhhhhhcccc
Confidence 44444433334 78888888889999999876664
No 369
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=47.61 E-value=14 Score=37.58 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=46.9
Q ss_pred cCCcCCCCchhhhhhhccc-ch---hHHHhHHHHhhccCCchhhhCCChhhhhccCCcccchHHHHHHHHHHHHh
Q psy84 1144 NTPINNWKPDQVADWLKGL-DV---SIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRN 1214 (2182)
Q Consensus 1144 ~~PI~sWs~dQVv~WLkGL-d~---~l~~Y~~~F~~~~I~G~~LL~L~~~dL~~LGV~~iGHre~ILeaV~~Lr~ 1214 (2182)
+....-|+-.||..||.-. +- .+.. -.|.+-+++|.+|-+|..+++..+-.. +|+. +.+-++.|+.
T Consensus 7 ~~~Pq~Wtk~qVleWL~~~~e~n~~dl~~--v~f~~F~MnG~~LC~l~~e~F~~~a~p-~Gdi--Ly~~L~~l~~ 76 (78)
T cd08537 7 GEEPQFWTKTQVLEWISYHVEKNKYDASS--IDFSRCDMDGATLCNCALDQMRLVFGP-LGDQ--LYAQLRELTS 76 (78)
T ss_pred CCCcccccHHHHHHHHHHHHHhccCCccc--CCHHHhCCchHHHHccCHHHHHHHcCC-hHHH--HHHHHHHHhc
Confidence 3445679999999999722 11 1111 136777999999999999998777777 8874 5577776653
No 370
>KOG0517|consensus
Probab=43.43 E-value=1.2 Score=63.51 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=73.2
Q ss_pred eEEEEEeecCC-----CCCCCCceEEEEEEeCCeEEEEecCCCCcc------ce--eEecCCcEEEecccccCcceeEEE
Q psy84 1858 CEGWLFQRDRK-----ISTVPQWIRGWFIIKGNHFYGFTDKDSTKA------HL--FIYLPGFTVAPAVEVKSRKYALKI 1924 (2182)
Q Consensus 1858 keGWL~KKg~k-----~s~~K~WKKRWFVLkd~~LyYYKde~d~kp------~G--sI~L~g~tVs~a~e~ksRk~aFkI 1924 (2182)
++|+|+++--. +...+.|..-|||+..+.|-+|+|...... .| .+.|..+.|..+.+...+++.|.+
T Consensus 2301 ~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~~l 2380 (2473)
T KOG0517|consen 2301 LEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVFLL 2380 (2473)
T ss_pred HHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhhhh
Confidence 68999766432 124678999999999999988998843322 23 233344666666666679999999
Q ss_pred EcCC-eEEEEEcCCHHHHHHHHHHHHHHhhh
Q psy84 1925 YHTG-TTFYLSADSQDEFSSWLGCLSQATIA 1954 (2182)
Q Consensus 1925 ~~~~-rtyyFsAdSeeEm~~WI~AL~~As~~ 1954 (2182)
..+. ..|.|.|.++++|+.|+.++..+...
T Consensus 2381 ~~~~gae~llq~k~ee~m~sWL~~~a~~~~~ 2411 (2473)
T KOG0517|consen 2381 QLPPGAEHLLQAKDEEEMESWLRALAVKRAE 2411 (2473)
T ss_pred cCCchHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 9776 99999999999999999998877653
No 371
>KOG3523|consensus
Probab=42.35 E-value=31 Score=45.86 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=46.3
Q ss_pred ceEEEEEEeCCeEEEEecCCC-------CccceeEecCCcEEEec-----ccccCcceeEEEE----cCC--eEEEEEcC
Q psy84 1875 WIRGWFIIKGNHFYGFTDKDS-------TKAHLFIYLPGFTVAPA-----VEVKSRKYALKIY----HTG--TTFYLSAD 1936 (2182)
Q Consensus 1875 WKKRWFVLkd~~LyYYKde~d-------~kp~GsI~L~g~tVs~a-----~e~ksRk~aFkI~----~~~--rtyyFsAd 1936 (2182)
.+--|+.|-+++|..-|.+.. ..+.+.|.+..+.-..- ....+++|.|.+. |.+ ..|.|.|+
T Consensus 499 ~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a~ 578 (695)
T KOG3523|consen 499 SKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLSAE 578 (695)
T ss_pred cceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeecCC
Confidence 344566666777666665522 23444444443321110 1122456888886 233 58999999
Q ss_pred CHHHHHHHHHHHHH
Q psy84 1937 SQDEFSSWLGCLSQ 1950 (2182)
Q Consensus 1937 SeeEm~~WI~AL~~ 1950 (2182)
|+.||++||.||.-
T Consensus 579 s~Sd~~RWi~Al~p 592 (695)
T KOG3523|consen 579 SQSDRQRWISALRP 592 (695)
T ss_pred chHHHHHHHHhcCC
Confidence 99999999999863
No 372
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=41.45 E-value=8.2 Score=48.04 Aligned_cols=28 Identities=25% Similarity=0.540 Sum_probs=21.1
Q ss_pred ceEEEEEeec--CCCCCCCCceEEEEEEeC
Q psy84 1857 DCEGWLFQRD--RKISTVPQWIRGWFIIKG 1884 (2182)
Q Consensus 1857 dkeGWL~KKg--~k~s~~K~WKKRWFVLkd 1884 (2182)
.++|+|+|+. .+..+.+.||||||+|++
T Consensus 281 ~~~~~~~~r~~~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 281 LKEGFMIKRAQGRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred hhhhhHHHhcccCCcccccchhheeeecCC
Confidence 4899999844 333466789999999963
No 373
>KOG3523|consensus
Probab=39.97 E-value=35 Score=45.40 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=47.2
Q ss_pred CCceeEEEEEeCCeEEEEecCCC-------CcceEEEEcCCcEEEe----c-cccCCCcceEEEEe----CC--eEEEEE
Q psy84 727 PQWIRGWFIIKGNHFYGFTDKDS-------TKAHLFIYLPGFTVAP----A-VEVKSRKYALKIYH----TG--TTFYLS 788 (2182)
Q Consensus 727 k~WKKRWFVLkd~~LyYYKdk~d-------kkpkGsI~L~g~tV~~----~-~d~ksRk~aFkL~~----~~--rtyyFa 788 (2182)
+..+.-|+.|=+.+|..-|.+.. ..+...|.+..|.-.. . ....+++|.|.+.- .+ ..|.|.
T Consensus 497 ~~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~ 576 (695)
T KOG3523|consen 497 RLSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLS 576 (695)
T ss_pred cccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeec
Confidence 34556676666777766665432 2334444444443101 0 11123567888752 33 589999
Q ss_pred cCCHHHHHHHHHHHH
Q psy84 789 ADSQDEFSSWLGCLS 803 (2182)
Q Consensus 789 AdSeeEme~WI~AL~ 803 (2182)
|+|+.||++||.||.
T Consensus 577 a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 577 AESQSDRQRWISALR 591 (695)
T ss_pred CCchHHHHHHHHhcC
Confidence 999999999999994
No 374
>KOG2996|consensus
Probab=38.85 E-value=46 Score=43.97 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=71.0
Q ss_pred cCCCCCCeeEEEEeecCCCCCCCCceeEEEEEeCCeEEEEecCCC-CcceEEEEcCCcEEEecc----ccC-----CCcc
Q psy84 705 KDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS-TKAHLFIYLPGFTVAPAV----EVK-----SRKY 774 (2182)
Q Consensus 705 ~~lg~vdkeGWL~Kkg~~~~~~k~WKKRWFVLkd~~LyYYKdk~d-kkpkGsI~L~g~tV~~~~----d~k-----sRk~ 774 (2182)
.+.|.+...|-|....-.. +.=+.||..|=+..+..-|.+.+ ...+..|.|..+.+.... +.+ ...|
T Consensus 401 ~~~GRpkiDGElki~s~~~---~tkqdRyiFLfDkvviVCKrkG~sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~ 477 (865)
T KOG2996|consen 401 HDFGRPKIDGELKITSTQA---HTKQDRYIFLFDKVVIVCKRKGDSYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSY 477 (865)
T ss_pred HHhCCCCcCceEEEeehhc---CCccceEEeEecceEEEeeccCcchhHHHHHHHHhhccccCCCCchhhhhccceeeee
Confidence 3445555677777665332 46678888888887777777643 455666788777665431 112 2468
Q ss_pred eEEEEeCC--eEEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 775 ALKIYHTG--TTFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 775 aFkL~~~~--rtyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
.|.|.|.. .-|.|.|.+++-...||+++..|..
T Consensus 478 ~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~S 512 (865)
T KOG2996|consen 478 GFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKS 512 (865)
T ss_pred eEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHh
Confidence 99999875 6888999999999999999998876
No 375
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=38.68 E-value=66 Score=38.89 Aligned_cols=63 Identities=27% Similarity=0.395 Sum_probs=44.4
Q ss_pred CCCCCcceEEEecCCcceEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcC--CcEEEEEEeCC
Q psy84 1351 RPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESS--SDIFLTLKKRP 1426 (2182)
Q Consensus 1351 ~~~e~LG~~I~s~~~G~h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~--~~vtL~LKkrP 1426 (2182)
+.+.-+|+.+...-+|..| +.+| |+.||.-|.||+++.. +++++.++|+... ..+.|||.++=
T Consensus 202 r~eki~Gyr~~pgkd~slF----------~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G 266 (275)
T COG3031 202 RNEKIEGYRFEPGKDGSLF----------YKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRG 266 (275)
T ss_pred eCCceEEEEecCCCCcchh----------hhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecC
Confidence 3455688888777554433 5565 9999999999999985 5666777766553 56677776553
No 376
>KOG2996|consensus
Probab=38.08 E-value=57 Score=43.17 Aligned_cols=103 Identities=14% Similarity=0.201 Sum_probs=73.2
Q ss_pred cccCCCCceEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCC-CccceeEecCCcEEEec----cc-----ccCcc
Q psy84 1850 VKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS-TKAHLFIYLPGFTVAPA----VE-----VKSRK 1919 (2182)
Q Consensus 1850 ~~~Lg~~dkeGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d-~kp~GsI~L~g~tVs~a----~e-----~ksRk 1919 (2182)
+.+.|.|-..|-|.-..- ....=+.||..|-+..+..-|...+ ....-.|.|..|.+.-. .+ .+.+.
T Consensus 400 l~~~GRpkiDGElki~s~---~~~tkqdRyiFLfDkvviVCKrkG~sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws 476 (865)
T KOG2996|consen 400 LHDFGRPKIDGELKITST---QAHTKQDRYIFLFDKVVIVCKRKGDSYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWS 476 (865)
T ss_pred HHHhCCCCcCceEEEeeh---hcCCccceEEeEecceEEEeeccCcchhHHHHHHHHhhccccCCCCchhhhhccceeee
Confidence 455788888888876553 2235567887777777777776643 44556778877777543 12 22357
Q ss_pred eeEEEEcCC--eEEEEEcCCHHHHHHHHHHHHHHhhhc
Q psy84 1920 YALKIYHTG--TTFYLSADSQDEFSSWLGCLSQATIAH 1955 (2182)
Q Consensus 1920 ~aFkI~~~~--rtyyFsAdSeeEm~~WI~AL~~As~~~ 1955 (2182)
|.|.|.|.. .-|-|.+.+++-.+.||+++..|...-
T Consensus 477 ~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SNi 514 (865)
T KOG2996|consen 477 YGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSNI 514 (865)
T ss_pred eeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhcC
Confidence 899999875 677888889999999999999987553
No 377
>KOG1264|consensus
Probab=37.23 E-value=39 Score=46.11 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=43.2
Q ss_pred eEEEEcCCcEEEec-cccCCCcceEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy84 753 HLFIYLPGFTVAPA-VEVKSRKYALKIYHTG---TTFYLSADSQDEFSSWLGCLSQATIAH 809 (2182)
Q Consensus 753 kGsI~L~g~tV~~~-~d~ksRk~aFkL~~~~---rtyyFaAdSeeEme~WI~AL~~As~~~ 809 (2182)
.|..++..|.|... .+...+.|.|.|...- -.|.|+|++.+|+..|+++|+.++...
T Consensus 853 rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 853 RGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred hccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 44566666665554 3344578899987653 688999999999999999999998853
No 378
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=37.21 E-value=8.3 Score=47.99 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceEEEEEeecCCC--CCCCCceEEEEEEeC
Q psy84 1857 DCEGWLFQRDRKI--STVPQWIRGWFIIKG 1884 (2182)
Q Consensus 1857 dkeGWL~KKg~k~--s~~K~WKKRWFVLkd 1884 (2182)
.++|+|+|+..+. .+.+.||||||.|+.
T Consensus 284 ~~e~~~~~r~~~~~~~~~~~~kkr~~~l~~ 313 (313)
T cd05394 284 LKEGEMYKRAQGRTRIGKKNFKKRWFCLTS 313 (313)
T ss_pred hHHHHHHhhccCCCccccccchhheeecCC
Confidence 4789998887432 356789999999863
No 379
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=34.05 E-value=12 Score=46.84 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=18.0
Q ss_pred ceEEEEEeecCCCC--CCCCceEEEEEEe
Q psy84 1857 DCEGWLFQRDRKIS--TVPQWIRGWFIIK 1883 (2182)
Q Consensus 1857 dkeGWL~KKg~k~s--~~K~WKKRWFVLk 1883 (2182)
.++|++.|+..+.+ +.+.||||||+|+
T Consensus 287 ~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 287 LKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred hhhhhhHhhcccCCCccccchhheeeecC
Confidence 37888777664322 4567888888874
No 380
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=33.97 E-value=1.2e+02 Score=36.99 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=47.5
Q ss_pred ceEEEeeeCCCCCcceEEEecCCcceEEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhC--CCcEEE
Q psy84 202 LDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SSDIFL 279 (2182)
Q Consensus 202 l~~V~L~K~~~e~LG~~I~~~~~g~h~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s--~~~VtL 279 (2182)
++++.+.+ .+.-+|+.....-+|. .-+.+ +|+.||..|.||++++. .++++.++|+.. -..+.|
T Consensus 195 Irltpv~r-~eki~Gyr~~pgkd~s----------lF~~s-glq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~ql 260 (275)
T COG3031 195 IRLTPVIR-NEKIEGYRFEPGKDGS----------LFYKS-GLQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQL 260 (275)
T ss_pred eEeeeEee-CCceEEEEecCCCCcc----------hhhhh-cCCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEE
Confidence 33444434 4557777777665444 33444 69999999999999996 677777777655 467788
Q ss_pred EEEec
Q psy84 280 TLKKR 284 (2182)
Q Consensus 280 ~lkkr 284 (2182)
+|.++
T Consensus 261 Tv~R~ 265 (275)
T COG3031 261 TVIRR 265 (275)
T ss_pred EEEec
Confidence 88655
No 381
>PF12812 PDZ_1: PDZ-like domain
Probab=32.52 E-value=71 Score=32.39 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=36.9
Q ss_pred EEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhcCC
Q psy84 1369 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSS 1416 (2182)
Q Consensus 1369 ~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~~~ 1416 (2182)
++.....|+++++.| |..|-.|..|||+.+. +.++.++.+++.|+
T Consensus 33 v~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 33 VYVAVSGGSLAFAGG-ISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred EEEEecCCChhhhCC-CCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 444557899996654 9999999999999995 78888998888765
No 382
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=27.36 E-value=19 Score=44.87 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=20.3
Q ss_pred CCeeEEEEeec--CCCCCCCCceeEEEEEeC
Q psy84 710 PDCEGWLFQRD--RKISTVPQWIRGWFIIKG 738 (2182)
Q Consensus 710 vdkeGWL~Kkg--~~~~~~k~WKKRWFVLkd 738 (2182)
+.++|.|.|+. ....+.+.||||||+|++
T Consensus 280 ~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 280 LLKEGFMIKRAQGRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred hhhhhhHHHhcccCCcccccchhheeeecCC
Confidence 35789998744 332334689999999973
No 383
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=26.43 E-value=88 Score=29.53 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhccCCCCCCchHHHHHHHHH-----HHHHHHHHHHhccCCCC
Q psy84 149 LLRLSLEMAFSGQRGKFADHPIENIRNSAK-----GLSELADEMIREIHDPL 195 (2182)
Q Consensus 149 I~~L~~EL~~~lq~d~~a~e~e~~il~~~~-----~L~~i~D~I~~~~~dpl 195 (2182)
+.++..+|....+.+ .++..++..+.+ +|+.++|.|++..++|-
T Consensus 5 ~~e~L~~L~~~~~~~---~~~~~eL~~lL~~p~~~aLl~~hD~va~~~~~~~ 53 (56)
T PF02828_consen 5 VLELLEELQSLSSAS---QEDAQELQQLLQSPHFQALLEVHDKVAQKVYEPP 53 (56)
T ss_dssp HHHHHHHHHHHTSST---HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhccCCC---hHHHHHHHHHHcCHHHHHHHHHHHHHHhhcCCCC
Confidence 334444444444322 255667777666 89999999999988873
No 384
>PF12812 PDZ_1: PDZ-like domain
Probab=25.85 E-value=1.2e+02 Score=30.83 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=36.6
Q ss_pred EEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCC
Q psy84 228 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSS 275 (2182)
Q Consensus 228 ~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~ 275 (2182)
++.....|++++.. .|..|-.|..|||+.+. +.++.++.+++.|+
T Consensus 33 v~v~~~~g~~~~~~-~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 33 VYVAVSGGSLAFAG-GISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred EEEEecCCChhhhC-CCCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 44445788898854 49999999999999996 78888888888765
No 385
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=24.66 E-value=1.2e+02 Score=38.23 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=38.2
Q ss_pred EEeccCCCChhhhcCCcCCCCeEEEECCeEecCCCHHHHHHHHHhCCC----cEEEEEEe
Q psy84 228 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSS----DIFLTLKK 283 (2182)
Q Consensus 228 ~VsrI~~gsPAd~sg~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~----~VtL~lkk 283 (2182)
++..+..+++|... .|.+||+|+++||..+..|.. +.+++....+ .+++.+.+
T Consensus 132 ~~~~v~~~s~a~~a-~l~~Gd~iv~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALA-GLRPGDRIVAVDGEKVASWDD--VRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHc-CCCCCCEEEeECCEEccCHHH--HHHHHHhccCCcccceEEEEEe
Confidence 55589999999987 599999999999999988764 3333333322 25666644
No 386
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=24.55 E-value=6.9e+02 Score=30.43 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=34.5
Q ss_pred CcCCCCeEEEECCeEecCCCHHHHHHHHHhCCCcEEEEE
Q psy84 243 KIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTL 281 (2182)
Q Consensus 243 ~L~~GDEIvqVNGq~VvGw~h~eVv~lLr~s~~~VtL~l 281 (2182)
.|..|+.|+=|.+..-.|-+...+++++++.+..|.=++
T Consensus 172 ~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~ 210 (238)
T PRK08558 172 ALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVF 210 (238)
T ss_pred HcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEE
Confidence 478999999999999999999999999999987765443
No 387
>KOG0249|consensus
Probab=24.43 E-value=33 Score=46.21 Aligned_cols=60 Identities=23% Similarity=0.468 Sum_probs=55.6
Q ss_pred HHHhhccchhhhhHHhHhhcccCchhhcCCChhhhh-ccCCcchhHHHHHHHHHHHHHhhhcc
Q psy84 16 DWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLE-HHGICKVGHQEIILEAVDHLRNFHYE 77 (2182)
Q Consensus 16 ~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL~-~LGV~~iGHre~IL~aV~~Lr~l~y~ 77 (2182)
+||-.| +|-||...|.+-=++-+-|=+|+..||. .|++..-=||--|--+|--|+.++|.
T Consensus 680 eWLPsl--GLpQYrsyFme~LvDARMLdhLsKkdLr~~LkmvdsFHr~Sl~yGImcLkrlnYD 740 (916)
T KOG0249|consen 680 EWLPSL--GLPQYRSYFMECLVDARMLDHLSKKDLRGHLKMVDSFHRTSLQYGIMCLKRLNYD 740 (916)
T ss_pred cccccc--CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence 699988 5999999999999999999999999985 59999999999999999999999993
No 388
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=24.16 E-value=19 Score=44.92 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=20.9
Q ss_pred CCeeEEEEeecCCCC--CCCCceeEEEEEeC
Q psy84 710 PDCEGWLFQRDRKIS--TVPQWIRGWFIIKG 738 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~--~~k~WKKRWFVLkd 738 (2182)
+.++|+|.|+..+.+ +.+.||||||.|+.
T Consensus 283 ~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~~ 313 (313)
T cd05394 283 HLKEGEMYKRAQGRTRIGKKNFKKRWFCLTS 313 (313)
T ss_pred hhHHHHHHhhccCCCccccccchhheeecCC
Confidence 457899988774433 34679999999863
No 389
>KOG0861|consensus
Probab=23.82 E-value=4e+02 Score=31.30 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=60.2
Q ss_pred cceEEEEEEcCCCCc--eEEeccCCCccCCCchhHHHHHHHHHHHHHHHhhhcccCCCCceeecccCCeEEEEEEcCCCc
Q psy84 1030 ANRYYFVMVGREDNP--LYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGV 1107 (2182)
Q Consensus 1030 m~i~~laIIGk~d~P--LY~~~f~s~~~~~~~~~l~~qfi~HsSLDiIeEk~~~t~~~yLg~Ld~~e~~~VygYvT~Tgi 1107 (2182)
|.+|++.|+.+.... |+-..++-..=+-=...-..+|+.+.|=-+++.. +.+..+-..-++|.+++|+-+.|+
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt-----~~g~rqsvk~~~Y~~h~yvrndgL 75 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERT-----GPGQRQSVKHEEYLVHVYVRNDGL 75 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhc-----CcccccccccceeEEEEEEecCCe
Confidence 568999999884433 3322221100000011245677888666665533 334455556779999999999999
Q ss_pred EEEEEecCCChH-HHHHHHHHHHHHHHH
Q psy84 1108 KFLMVHDSKNEE-GIKKFFTSVYELFIK 1134 (2182)
Q Consensus 1108 KFILi~d~~~e~-~Ir~fF~~VhelYvd 1134 (2182)
=-|++.|..-.. -.-.++++|-+-|..
T Consensus 76 ~~V~~~D~eYP~rvA~tLL~kvld~~~~ 103 (198)
T KOG0861|consen 76 CGVLIADDEYPVRVAFTLLNKVLDEFTT 103 (198)
T ss_pred eEEEEecCcCchhHHHHHHHHHHHHHhh
Confidence 999999975432 124556666666643
No 390
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=23.60 E-value=23 Score=44.27 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=15.9
Q ss_pred CCeeEEEEeecCCCC--CCCCceeEEEEEe
Q psy84 710 PDCEGWLFQRDRKIS--TVPQWIRGWFIIK 737 (2182)
Q Consensus 710 vdkeGWL~Kkg~~~~--~~k~WKKRWFVLk 737 (2182)
+.++|++.|+..+.+ +.+.||||||+|+
T Consensus 286 ~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 286 VLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred hhhhhhhHhhcccCCCccccchhheeeecC
Confidence 346677666553322 2356777777763
No 391
>KOG0592|consensus
Probab=22.32 E-value=2e+02 Score=38.75 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=57.5
Q ss_pred eEEEEEeecCCCCCCCCceEEEEEEeCCeEEEEecCCCCccceeEecCC-cEEEecccccCcceeEEEEcCCeEEEEEcC
Q psy84 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAVEVKSRKYALKIYHTGTTFYLSAD 1936 (2182)
Q Consensus 1858 keGWL~KKg~k~s~~K~WKKRWFVLkd~~LyYYKde~d~kp~GsI~L~g-~tVs~a~e~ksRk~aFkI~~~~rtyyFsAd 1936 (2182)
++|+|.|+.+- .=+||.|+|..+--++|-+.......|.|++.. +.++.. ....|.|.++.++|||--
T Consensus 453 k~~~l~k~~~l-----f~rkr~lllTn~~rll~~~~~~~~lk~eip~~~~~~~e~~-----n~~~~~i~TP~k~~~l~d- 521 (604)
T KOG0592|consen 453 KEGALEKRQGL-----FARKRMLLLTNGPRLLYVDPQNLVLKGEIPWSPDLRVELK-----NSSTFFIHTPNKVYYLED- 521 (604)
T ss_pred hHHHHHhhhhh-----hhceeEEEecCCCeEEEEecccceeccccccCcccceeec-----cCcceEEECCccceeccC-
Confidence 45666655431 234589999976544444466667788898887 444443 344599999999999865
Q ss_pred CHHHHHHHHHHHHHH
Q psy84 1937 SQDEFSSWLGCLSQA 1951 (2182)
Q Consensus 1937 SeeEm~~WI~AL~~A 1951 (2182)
=+.....|..+|..+
T Consensus 522 ~~~~as~w~~ai~~~ 536 (604)
T KOG0592|consen 522 PEQRASVWCKAIETV 536 (604)
T ss_pred cccchhHHHHhhhhh
Confidence 456678899999987
No 392
>KOG2572|consensus
Probab=22.27 E-value=4.3e+02 Score=34.46 Aligned_cols=100 Identities=27% Similarity=0.269 Sum_probs=57.7
Q ss_pred HHHHHhhccchhhhhHHhHhhcccCchhhcCCChhhh-----hccCCcchhHHHHHHHHHHHHHhhhccc-CcchHHHHH
Q psy84 14 VADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDL-----EHHGICKVGHQEIILEAVDHLRNFHYEL-DHENLQLLA 87 (2182)
Q Consensus 14 V~~WL~GLd~~l~~Y~~~F~~~~I~G~~LL~L~~~dL-----~~LGV~~iGHre~IL~aV~~Lr~l~y~l-~~ENLqsLa 87 (2182)
|..-++|- +.--+..|....-.|+-|.- ....| +.|.+.-+ |-.-+++-....|..-.+| ...|-+-|+
T Consensus 60 ~~~l~eGk---vs~~L~k~lk~~~~~etLaV-aD~KLgn~i~ekL~~~~v-~~~~v~el~RgiRs~l~el~~g~~~~dl~ 134 (498)
T KOG2572|consen 60 VTALAEGK---VSSGLEKFLKLNKKKETLAV-ADAKLGNAIKEKLSINCV-HDSAVMELLRGIRSQLTELISGLNDSDLA 134 (498)
T ss_pred HHHHHcCC---cchhHHHHHHhhccCCeeee-ccHHHhHHHHHhhcceee-cchhHHHHHHHHHHHHHHHhccCChhhhh
Confidence 44444443 22334556665555554443 22222 12333322 4444444444444333333 336667788
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCchhhHHHHH
Q psy84 88 LRVSCLAHSLHRELWNYSSPVVSTQTLSDVA 118 (2182)
Q Consensus 88 ~~L~~~~~sL~~~i~~~~s~~~~~~~L~~Vv 118 (2182)
....+.+|+|.+.-..-.+.++.+.++++|.
T Consensus 135 ~msLglaHslar~Klkfs~dKvDtmIiQais 165 (498)
T KOG2572|consen 135 AMSLGLAHSLARYKLKFSPDKVDTMIIQAIS 165 (498)
T ss_pred HHHHHHHHHHHhhhcccCcchhhHHHHHHHH
Confidence 8888889999887777789999999999985
No 393
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=22.16 E-value=1.4e+02 Score=37.64 Aligned_cols=54 Identities=24% Similarity=0.418 Sum_probs=38.7
Q ss_pred eEEeccCCCChhhhcCcccCCCeEEEECCeEecCCCHHHHHHHHHhc--CC--cEEEEEEe
Q psy84 1368 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES--SS--DIFLTLKK 1424 (2182)
Q Consensus 1368 h~Is~I~~gSPAd~~g~L~~GDeIvQVNGq~VvGw~h~~Vv~~Lre~--~~--~vtL~LKk 1424 (2182)
.++..+..+|+|...| +.+||+|+++||..+..|.. +.+.+... .. .+++.+..
T Consensus 131 ~~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 131 PVVGEVAPKSAAALAG-LRPGDRIVAVDGEKVASWDD--VRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred CeeeecCCCCHHHHcC-CCCCCEEEeECCEEccCHHH--HHHHHHhccCCcccceEEEEEe
Confidence 3566899999997665 99999999999999988764 33444433 22 25666654
No 394
>PF08192 Peptidase_S64: Peptidase family S64; InterPro: IPR012985 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This family of fungal proteins is involved in the processing of membrane bound transcription factor Stp1 [] and belongs to MEROPS petidase family S64 (clan PA). The processing causes the signalling domain of Stp1 to be passed to the nucleus where several permease genes are induced. The permeases are important for uptake of amino acids, and processing of tp1 only occurs in an amino acid-rich environment. This family is predicted to be distantly related to the trypsin family (MEROPS peptidase family S1) and to have a typical trypsin-like catalytic triad [].
Probab=21.88 E-value=1.2e+03 Score=32.63 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHhhhhhccCCC-------CCCChhhhHHHHHHHHHHHHHH
Q psy84 1225 QLLALRVSCLAHSLHRELWNYSSPVVSTQTLSDVATIIKAVKPLVCWLDRP-------PFSGQLAFIDKKAELLRLSLEM 1297 (2182)
Q Consensus 1225 q~La~~l~~~a~sl~~~i~~~~~~~~~~~~L~~Vv~li~aaK~Ll~WLdR~-------pF~~~~df~~~r~~I~~l~~eL 1297 (2182)
+.+..+|..+.++|-..+.++.... ..+=+||+++|+--|..+..++.. -|+..+.. .+| .|+++-+.+
T Consensus 167 ~~i~~~L~~L~~~l~~lm~q~~qsv--~NlS~aVi~~Ie~fK~F~~~~~~~~~~~~~~~~t~~nn~-~lR-~i~Ki~Lhf 242 (695)
T PF08192_consen 167 EQIEDELKQLEEDLSYLMDQINQSV--TNLSKAVINAIECFKEFINFLPSLNKTKPPYRFTTYNNA-SLR-KITKIYLHF 242 (695)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHHhhhccchhcccCCceeEEecccH-hHH-HHHHHHHHH
Confidence 3344444444444444444332111 245679999999999997776542 12222222 345 688888888
Q ss_pred HhhcccC
Q psy84 1298 AFSGQRG 1304 (2182)
Q Consensus 1298 a~~vq~D 1304 (2182)
-+++.+|
T Consensus 243 ~DNLL~~ 249 (695)
T PF08192_consen 243 YDNLLKD 249 (695)
T ss_pred HHHhhhh
Confidence 7776643
No 395
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=20.97 E-value=1.6e+02 Score=32.04 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=32.0
Q ss_pred CcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHhhh
Q psy84 772 RKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATI 807 (2182)
Q Consensus 772 Rk~aFkL~~~~rtyyFaAdSeeEme~WI~AL~~As~ 807 (2182)
..+.|.|.+......|.|+|..+.+.|++.|+.-..
T Consensus 69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 568899999999999999999999999999976443
Done!