RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy84
(2182 letters)
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit
tethering factor, trapp, palmitate, transport,
lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP:
d.110.4.3 PDB: 1h3q_A
Length = 142
Score = 150 bits (379), Expect = 7e-42
Identities = 60/121 (49%), Positives = 94/121 (77%), Gaps = 2/121 (1%)
Query: 1029 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 1086
M+ +YFV+VG DNP+++ F K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 62
Query: 1087 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 1146
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 63 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 122
Query: 1147 I 1147
I
Sbjct: 123 I 123
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 109 bits (274), Expect = 2e-28
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
P+ W P +VA WL+GLD S+ Y F + + G++LL L P LE + +GHQE+I
Sbjct: 10 PVETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELI 67
Query: 1206 LEAVDHLRNFHYELDHEN 1223
L V+ L+ L EN
Sbjct: 68 LGGVEQLQALSSRLQTEN 85
Score = 108 bits (272), Expect = 4e-28
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 65
V W P +VA WL+GLD S+ Y F + + G++LL L P LE + +GHQE+IL
Sbjct: 11 VETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELIL 68
Query: 66 EAVDHLRNFHYELDHEN 82
V+ L+ L EN
Sbjct: 69 GGVEQLQALSSRLQTEN 85
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 107 bits (269), Expect = 7e-28
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
P++ W P QV DW+KGLD + +Y+++F ++G LL + +LE G+ ++GHQE+I
Sbjct: 3 PVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELI 62
Query: 1206 LEAVDHLRNFHYELDHEN 1223
LEAVD L +Y L+ EN
Sbjct: 63 LEAVDLLCALNYGLETEN 80
Score = 107 bits (268), Expect = 1e-27
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 65
V+ W P QV DW+KGLD + +Y+++F ++G LL + +LE G+ ++GHQE+IL
Sbjct: 4 VSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELIL 63
Query: 66 EAVDHLRNFHYELDHEN 82
EAVD L +Y L+ EN
Sbjct: 64 EAVDLLCALNYGLETEN 80
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 98.3 bits (245), Expect = 2e-24
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 64
V+ W P QV DW+KGLD + +Y+++F ++G LL + +LE G+ ++GHQE+I
Sbjct: 7 GVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELI 66
Query: 65 LEAVDHLRNFHYEL 78
LEAVD L +
Sbjct: 67 LEAVDLLCALNSGP 80
Score = 97.9 bits (244), Expect = 2e-24
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 1144 NTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQE 1203
++ ++ W P QV DW+KGLD + +Y+++F ++G LL + +LE G+ ++GHQE
Sbjct: 5 SSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQE 64
Query: 1204 IILEAVDHLRNFHYEL 1219
+ILEAVD L +
Sbjct: 65 LILEAVDLLCALNSGP 80
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 96.3 bits (240), Expect = 2e-23
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 769
G+L++ W WF+IK Y + + A L GFTV +
Sbjct: 8 STMSGYLYRSKGSKKP---WKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDE 64
Query: 770 KSRKYALKIYHTGTTFY-LSADSQDEFSSWLGCLSQATIAHDRS 812
S ++ H G FY AD W+ + T++ S
Sbjct: 65 NSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108
Score = 96.3 bits (240), Expect = 2e-23
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 1915
G+L++ W WF+IK Y + + A L GFTV +
Sbjct: 8 STMSGYLYRSKGSKKP---WKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDE 64
Query: 1916 KSRKYALKIYHTGTTFY-LSADSQDEFSSWLGCLSQATIAHDRS 1958
S ++ H G FY AD W+ + T++ S
Sbjct: 65 NSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer,
SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 91.6 bits (227), Expect = 6e-22
Identities = 14/86 (16%), Positives = 32/86 (37%)
Query: 1144 NTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQE 1203
+ W V W + +Y + F + + G+ LL + L+ G+ +E
Sbjct: 20 PKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDRE 79
Query: 1204 IILEAVDHLRNFHYELDHENLQLLAL 1229
I + R ++ +++ L +
Sbjct: 80 AIWREIVKQRLKTDIMEIRDMERLNI 105
Score = 91.2 bits (226), Expect = 9e-22
Identities = 15/84 (17%), Positives = 32/84 (38%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 64
V W V W + +Y + F + + G+ LL + L+ G+ +E I
Sbjct: 22 AVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAI 81
Query: 65 LEAVDHLRNFHYELDHENLQLLAL 88
+ R ++ +++ L +
Sbjct: 82 WREIVKQRLKTDIMEIRDMERLNI 105
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 92.1 bits (229), Expect = 8e-22
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 699 RRNISVK--DLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFI 756
+R+ S+K GWL+++D + + W + WF++ + + D+ I
Sbjct: 8 KRSNSIKRNPNAPVVRRGWLYKQDS--TGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSI 65
Query: 757 YLPGFTV--APAVEVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSP 813
LP F + + + +RKYA K H T+Y D+ E W+ + A + P
Sbjct: 66 LLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTSGP 125
Score = 92.1 bits (229), Expect = 8e-22
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 1845 RRNISVK--DLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFI 1902
+R+ S+K GWL+++D + + W + WF++ + + D+ I
Sbjct: 8 KRSNSIKRNPNAPVVRRGWLYKQDS--TGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSI 65
Query: 1903 YLPGFTV--APAVEVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSP 1959
LP F + + + +RKYA K H T+Y D+ E W+ + A + P
Sbjct: 66 LLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTSGP 125
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane, metal-binding,
phorbol-ester binding; 2.90A {Homo sapiens}
Length = 81
Score = 85.5 bits (212), Expect = 5e-20
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 1144 NTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQE 1203
P++ W ++VA WL+ L + Y + F + + G LL+L+ DL+ G+ KVGH +
Sbjct: 4 TRPVHLWGTEEVAAWLEHLSLC--EYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMK 61
Query: 1204 IILEAVDHLRNFHYELDHEN 1223
IL + L H +
Sbjct: 62 RILCGIKELSRSSRHHHHHH 81
Score = 85.1 bits (211), Expect = 5e-20
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 64
V W ++VA WL+ L + Y + F + + G LL+L+ DL+ G+ KVGH + I
Sbjct: 6 PVHLWGTEEVAAWLEHLSLC--EYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRI 63
Query: 65 LEAVDHLRNFHYELDHEN 82
L + L H +
Sbjct: 64 LCGIKELSRSSRHHHHHH 81
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 86.9 bits (215), Expect = 1e-19
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 8/139 (5%)
Query: 702 ISVKDLVMPDCEGWLFQRDRKISTV-PQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG 760
I +DL G+L +R + S + +W + W + FY + + + G
Sbjct: 9 IPAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDG 68
Query: 761 FTV---APAVEVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSPVEN 816
+ V + + +I + +A S + W+ L +
Sbjct: 69 YDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGS---DV 125
Query: 817 ITFSESEGEEKSSDKSDSD 835
I + E E D
Sbjct: 126 IPEDDEERGELYDDVDHPA 144
Score = 86.9 bits (215), Expect = 1e-19
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 8/139 (5%)
Query: 1848 ISVKDLVMPDCEGWLFQRDRKISTV-PQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG 1906
I +DL G+L +R + S + +W + W + FY + + + G
Sbjct: 9 IPAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDG 68
Query: 1907 FTV---APAVEVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSPVEN 1962
+ V + + +I + +A S + W+ L +
Sbjct: 69 YDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGS---DV 125
Query: 1963 ITFSESEGEEKSSDKSDSD 1981
I + E E D
Sbjct: 126 IPEDDEERGELYDDVDHPA 144
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 83.2 bits (206), Expect = 2e-19
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
++ W QV+ WL GL + +YV F +++G+ LL L + L+ G+ + ++
Sbjct: 3 MVHEWSVQQVSHWLVGLSLD--QYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALV 60
Query: 1206 LEAVDHLRN 1214
+ + ++
Sbjct: 61 KKKLKEMKM 69
Score = 82.4 bits (204), Expect = 4e-19
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 65
V +W QV+ WL GL + +YV F +++G+ LL L + L+ G+ + ++
Sbjct: 4 VHEWSVQQVSHWLVGLSLD--QYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVK 61
Query: 66 EAVDHLRN 73
+ + ++
Sbjct: 62 KKLKEMKM 69
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 82.8 bits (205), Expect = 3e-19
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 65
+ W V DWL+ + + + + F ++ + G HL L +D G+ +VGH+E I
Sbjct: 2 LQLWSKFDVGDWLESIHLG--EHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIE 59
Query: 66 EAVDHLRNFHYELDH 80
A+ L H
Sbjct: 60 RALRQLDGSRRHHHH 74
Score = 81.7 bits (202), Expect = 9e-19
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1147 INNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 1206
+ W V DWL+ + + + + F ++ + G HL L +D G+ +VGH+E I
Sbjct: 2 LQLWSKFDVGDWLESIHLG--EHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIE 59
Query: 1207 EAVDHLRNFHYELDH 1221
A+ L H
Sbjct: 60 RALRQLDGSRRHHHH 74
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 82.9 bits (205), Expect = 3e-19
Identities = 13/77 (16%), Positives = 27/77 (35%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
+ W V W + +Y + F + + G+ LL + L+ G+ +E I
Sbjct: 2 AVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAI 61
Query: 1206 LEAVDHLRNFHYELDHE 1222
+ R ++
Sbjct: 62 WREIVKQRLKTDIMEIR 78
Score = 81.8 bits (202), Expect = 8e-19
Identities = 14/76 (18%), Positives = 27/76 (35%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 65
V W V W + +Y + F + + G+ LL + L+ G+ +E I
Sbjct: 3 VYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIW 62
Query: 66 EAVDHLRNFHYELDHE 81
+ R ++
Sbjct: 63 REIVKQRLKTDIMEIR 78
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 83.8 bits (207), Expect = 4e-19
Identities = 16/81 (19%), Positives = 34/81 (41%)
Query: 1139 PFYKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICK 1198
P +++ W P+QV +L+ +++ N + G L L E+ G+
Sbjct: 19 PGLELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSS 78
Query: 1199 VGHQEIILEAVDHLRNFHYEL 1219
+G ++ +L + L H +
Sbjct: 79 LGERKKLLSYIQRLVQIHVDT 99
Score = 83.4 bits (206), Expect = 4e-19
Identities = 15/74 (20%), Positives = 31/74 (41%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 64
+ W P+QV +L+ +++ N + G L L E+ G+ +G ++ +
Sbjct: 26 DYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKL 85
Query: 65 LEAVDHLRNFHYEL 78
L + L H +
Sbjct: 86 LSYIQRLVQIHVDT 99
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 83.3 bits (206), Expect = 1e-18
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--AV 767
GWL ++D S + W R WF++ G+ + + D + LP + + P
Sbjct: 11 VHIRGWLHKQDS--SGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPG 68
Query: 768 EVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRS 812
+ R++ H G T+ L+AD+ ++ WL L +A+ A
Sbjct: 69 APRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDD 114
Score = 83.3 bits (206), Expect = 1e-18
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--AV 1913
GWL ++D S + W R WF++ G+ + + D + LP + + P
Sbjct: 11 VHIRGWLHKQDS--SGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPG 68
Query: 1914 EVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRS 1958
+ R++ H G T+ L+AD+ ++ WL L +A+ A
Sbjct: 69 APRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDD 114
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 81.7 bits (202), Expect = 2e-18
Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 710 PDCEGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE 768
+G+L + +W + W ++ FY + ++ S + + G++V A
Sbjct: 3 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPH 62
Query: 769 VK---SRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQA 805
++ ++ ++ T+ +A S E W+ +S
Sbjct: 63 LRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103
Score = 81.7 bits (202), Expect = 2e-18
Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 1856 PDCEGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE 1914
+G+L + +W + W ++ FY + ++ S + + G++V A
Sbjct: 3 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPH 62
Query: 1915 VK---SRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQA 1951
++ ++ ++ T+ +A S E W+ +S
Sbjct: 63 LRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 81.3 bits (201), Expect = 3e-18
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 710 PDCEGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--A 766
GWLF Q + W + WF++ + + D+ I L F VA
Sbjct: 11 VTKAGWLFKQASSGVKQ---WNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQP 67
Query: 767 VEVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSP 813
+ SRK+ K H G T++ SA+S +E +W+ + +A
Sbjct: 68 SDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSGPS 115
Score = 81.3 bits (201), Expect = 3e-18
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 1856 PDCEGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--A 1912
GWLF Q + W + WF++ + + D+ I L F VA
Sbjct: 11 VTKAGWLFKQASSGVKQ---WNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQP 67
Query: 1913 VEVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSP 1959
+ SRK+ K H G T++ SA+S +E +W+ + +A
Sbjct: 68 SDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSGPS 115
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 79.8 bits (197), Expect = 2e-17
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--AV 767
GWLF++ QW + WF++ + + D+ I L F VA
Sbjct: 22 VTKAGWLFKQASSGVK--QWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPS 79
Query: 768 EVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAH 809
+ SRK+ K H G T++ SA+S +E +W+ + +A
Sbjct: 80 DNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQ 122
Score = 79.8 bits (197), Expect = 2e-17
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAP--AV 1913
GWLF++ QW + WF++ + + D+ I L F VA
Sbjct: 22 VTKAGWLFKQASSGVK--QWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPS 79
Query: 1914 EVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAH 1955
+ SRK+ K H G T++ SA+S +E +W+ + +A
Sbjct: 80 DNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQ 122
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 79.1 bits (195), Expect = 2e-17
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 713 EGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKS 771
EG L + W + ++ Y + D+ L + + G +
Sbjct: 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANT 62
Query: 772 --RKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQA 805
R +A ++ + LSA+S+ E + W+ L QA
Sbjct: 63 TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQA 99
Score = 79.1 bits (195), Expect = 2e-17
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 1859 EGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKS 1917
EG L + W + ++ Y + D+ L + + G +
Sbjct: 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANT 62
Query: 1918 --RKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQA 1951
R +A ++ + LSA+S+ E + W+ L QA
Sbjct: 63 TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQA 99
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain,
signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1
PDB: 2otx_A
Length = 211
Score = 82.1 bits (202), Expect = 2e-17
Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 8/172 (4%)
Query: 1785 LKSRINIPASTRNEKPEAQGQILQTEVDDKKHSCDSSESPKHKATSPKVFRKKTNLLRGK 1844
+K ++ + E + E DD + S + +
Sbjct: 38 IKKIKDVKSVYLQEFQDKGDAEDGDEYDDPFAGPADTISLASERYDKD---DDGPSDGNQ 94
Query: 1845 RRNISVKDLVMPDCEGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIY 1903
I+ +DL G+L +R +W + W + FY + +
Sbjct: 95 FPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFA 154
Query: 1904 LPGFTVAPAVEVKS---RKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQA 1951
+ G+ V ++ + +I + +A S + W+ L
Sbjct: 155 IDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 206
Score = 79.8 bits (196), Expect = 1e-16
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 702 ISVKDLVMPDCEGWLF-QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG 760
I+ +DL G+L +R +W + W + FY + + + G
Sbjct: 98 IAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDG 157
Query: 761 FTVAPAVEVKS---RKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQA 805
+ V ++ + +I + +A S + W+ L
Sbjct: 158 YDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 206
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 78.9 bits (194), Expect = 2e-17
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 714 GWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYLPGFTVAP--AVE 768
G L + + W W I + + + I LP ++ E
Sbjct: 12 GPLRLSESGET----WSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEE 67
Query: 769 VKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQAT 806
+ K+ ++YLSA S + WL LS A
Sbjct: 68 RLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAA 105
Score = 78.9 bits (194), Expect = 2e-17
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 1860 GWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYLPGFTVAP--AVE 1914
G L + + W W I + + + I LP ++ E
Sbjct: 12 GPLRLSESGET----WSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEE 67
Query: 1915 VKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQAT 1952
+ K+ ++YLSA S + WL LS A
Sbjct: 68 RLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAA 105
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 77.6 bits (191), Expect = 5e-17
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHL-FIYLPGFTVAPAVE 768
+ +L QW W ++ NH + + D++ +K + L G V P
Sbjct: 8 LETSSYLNVLVNS-----QWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS 62
Query: 769 VKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRS 812
Y+ +I H G L A S +E WLG L + + S
Sbjct: 63 PD-HLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSGPSS 106
Score = 77.6 bits (191), Expect = 5e-17
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHL-FIYLPGFTVAPAVE 1914
+ +L QW W ++ NH + + D++ +K + L G V P
Sbjct: 8 LETSSYLNVLVNS-----QWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS 62
Query: 1915 VKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRS 1958
Y+ +I H G L A S +E WLG L + + S
Sbjct: 63 PD-HLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSGPSS 106
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 91
Score = 74.2 bits (182), Expect = 5e-16
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 1 MAYVNVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH--GICKV 58
+ + V W ++V WL+ L Y + FL+ VNG+ LL L ++ I
Sbjct: 12 LVHKAVDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENS 71
Query: 59 GHQEIILEAVDHLRN 73
H+ +IL ++ +R+
Sbjct: 72 SHRRVILTELERVRS 86
Score = 73.5 bits (180), Expect = 9e-16
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 1142 KINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH--GICKV 1199
++ ++ W ++V WL+ L Y + FL+ VNG+ LL L ++ I
Sbjct: 12 LVHKAVDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENS 71
Query: 1200 GHQEIILEAVDHLRN 1214
H+ +IL ++ +R+
Sbjct: 72 SHRRVILTELERVRS 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 83.7 bits (206), Expect = 6e-16
Identities = 90/618 (14%), Positives = 157/618 (25%), Gaps = 211/618 (34%)
Query: 1075 LDEQVWQTDHMYLKTIDKFNDMMVSAF------------VTPTGVKFLMVHDSKNEEGIK 1122
+D + + + Y + F D V F ++ + + + G
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVSGTL 65
Query: 1123 KFF-------TSVYELFIKYSLNPFYKINTPINNWKPDQVADWLKGLDVSIHRYVE---- 1171
+ F + + F++ L Y + + + + Y+E
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 1172 ------SFLNNHVN--------GQHLLNLQPDD-LEHHGICKVGHQEIILEAV-DH--LR 1213
F +V+ Q LL L+P + G+ G + L+ +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 1214 NFHY-------------ELDHENLQLLALRVSCLAHSLHRELWNYSSPVVSTQT------ 1254
+ E E LQ L ++ S N + S Q
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 1255 -----------LSDV--ATIIKAV----KPLVCWLDRPPFSGQLAFIDKKAELLRLSLEM 1297
L +V A A K L+ + Q+ A +SL+
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-----QVTDFLSAATTTHISLDH 293
Query: 1298 AFSGQR--------GKFADHPIENIRNSAKGLSELADEMI-REIHDPL------------ 1336
K+ D +++ + +I I D L
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 1337 -LLQPSSLDLATLKKRPGEH----LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEI 1391
L L L+ P E+ + P
Sbjct: 354 KLTTIIESSLNVLE--PAEYRKMFDRLSVFP---------------------------PS 384
Query: 1392 VQINYQT-VVGW------DVKQVMALFEESSS-------------DIFLTLKKRP----- 1426
I + W DV V+ + S I+L LK +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 1427 CHSKILGQIYMKPYRLPSKKQVSYRWFLDDKITPPRI-----SHFDIKPLGHALVNSVTS 1481
H I+ Y +P F D + PP + SH +GH L N
Sbjct: 445 LHRSIVDH-----YNIPKT-------FDSDDLIPPYLDQYFYSH-----IGHHLKNIEHP 487
Query: 1482 --------------FTKNRKPLSGSFENAKE---DVSIDIENQNKSIQKEEPEDDLEDDD 1524
F + + + NA + ++ I +P+ E
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY--ERLV 545
Query: 1525 DDDEDNEPEEEEESISSP 1542
+ D P+ EE I S
Sbjct: 546 NAILDFLPKIEENLICSK 563
Score = 69.5 bits (169), Expect = 1e-11
Identities = 70/436 (16%), Positives = 127/436 (29%), Gaps = 146/436 (33%)
Query: 12 DQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGI-------CKV----GH 60
+ L+ L + Y LL L ++++ CK+
Sbjct: 228 HSIQAELRRL-LKSKPYENC----------LLVL--LNVQNAKAWNAFNLSCKILLTTRF 274
Query: 61 QEIILEAVDHLRNFHYELDH--------ENLQLLALRVSCLAHSLHRELWNYSSPVVSTQ 112
+++ + + H LDH E LL + C L RE+ ++P
Sbjct: 275 KQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-TNPRR--- 329
Query: 113 TLSDVATIIKAVKPLVCWLDRPPFSGQLAFIDKKAELLRLSLE-MAFSGQRGKFADHPI- 170
++ I ++++ L + DK ++ SL + + R F +
Sbjct: 330 ----LSIIAESIRD---GLATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 171 -ENIRNSAKGLSELADEMIREIHDPLL--LQPSSLDLATLKKRPGEHLGFCIIPSFHGIH 227
+ LS + ++I+ ++ L SL ++K+P E I
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL----VEKQPKEST--------ISIP 429
Query: 228 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCH 287
I Y K++ +E AL H
Sbjct: 430 SI---------YLELKVKLENEY-----------------AL-----------------H 446
Query: 288 SKILGQIYMKPYRLPSKKQVSYRWFLDDKITPPRI-----SHFDIKPLGHALVNSVTS-- 340
I+ Y +P F D + PP + SH +GH L N
Sbjct: 447 RSIVDH-----YNIPKT-------FDSDDLIPPYLDQYFYSH-----IGHHLKNIEHPER 489
Query: 341 ------------FTKNRKPLSGSFENAKE---DVSIDIENQNKSIQKEEPEDDLEDDDDD 385
F + + + NA + ++ I +P+ E +
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY--ERLVNA 547
Query: 386 DEDNEPEEEEESISSP 401
D P+ EE I S
Sbjct: 548 ILDFLPKIEENLICSK 563
Score = 56.0 bits (134), Expect = 1e-07
Identities = 93/622 (14%), Positives = 172/622 (27%), Gaps = 186/622 (29%)
Query: 1370 IGDIKCNSTAYQSGKI----ECGDEIVQINYQTVVGWDVKQVMALFE------ESSSDIF 1419
+ + C I E D I+ V + LF E F
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEI-DHIIM------SKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 1420 LTLKKRPCHSKILGQIYMKPYRLPSKKQVSY-----RWFLDDKITPP----RISHFD--- 1467
+ R + ++ I + R PS Y R + D+++ R+ +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 1468 -----IKP---------LG---HALVNSVTSFTKNRKPLSG-----SFENAKEDVSIDIE 1505
++P LG + V K + + + +N ++ +E
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LE 200
Query: 1506 NQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTSVRLYHPKPRLPVQRRATITGT 1565
K + + +P D + + + RL KP
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPY------------ 243
Query: 1566 GASPTSKRAPLNLEQLWHELKLEKEWR--------------------LSGKQRK------ 1599
+ L L + + K W LS
Sbjct: 244 ------ENCLLVLLNVQNA----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 1600 -----GEKSTSELLLSATS------PSEVGSDENKIHLKSAPKACS--ADCLKSVQSDFV 1646
LLL P EV L + P+ S A+ ++ D +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREV--------LTTNPRRLSIIAESIR----DGL 341
Query: 1647 RRNKPDLNLLDSKFIAENEIPGKSLKETD-QESKKV-NDPSLTEEESNMFIPLKERIEIF 1704
N I SL + E +K+ + S+ ++ IP + +
Sbjct: 342 ATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--IPTI-LLSLI 395
Query: 1705 ---NKKIDDSNSVHSMKPKVPAKRYVQNEGFISL-----------TNSPA-HRPTEKKPV 1749
K D V+ + ++ E IS+ N A HR V
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHR----SIV 450
Query: 1750 AR--PRGKLDKSNSTPVYDFN----------DRPQGADEIELL----LS-RELKSRINIP 1792
D + P Y + + + L L R L+ +I
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 1793 ASTRNEKPEAQGQILQTEVDD---KKHSCDSSESPKHKATSPKVF--RKKTNLLRGKRRN 1847
++ N A G IL T K + CD+ + + F + + NL+ K +
Sbjct: 511 STAWN----ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Query: 1848 ISVKDLVMPDCEGWLFQRDRKI 1869
+ ++ +M + E + +++
Sbjct: 567 L-LRIALMAEDEAIFEEAHKQV 587
Score = 52.2 bits (124), Expect = 2e-06
Identities = 90/692 (13%), Positives = 176/692 (25%), Gaps = 182/692 (26%)
Query: 548 EESNMFIPLKERIEIFNKKI--D-DSNSVHSMKPKVPAKRYVQNEGFISLTNSPAHRPTE 604
E K+ + +F + D V M + +K + + + S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-----IIMSK----DA 60
Query: 605 KKPVARPRGKLDKSNSTPVYDFNDRPQGADEIELLLSRELKSRINIPASTLRSVLPGPSS 664
R L V F + + + L+S +K+ P+ R +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSP-IKTEQRQPSMMTRMYIEQRDR 118
Query: 665 IQNSPLRAIIPLKPKHKATSPKVFRKKTNLLRGKRRNISVKDLV--MPDCEG--WLFQ-- 718
+ N + K+ + + + K L R +V L+ + G W+
Sbjct: 119 LYNDN-----QVFAKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGS-GKTWVALDV 170
Query: 719 -RDRKISTVPQ----WIR-------GWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPA 766
K+ W+ + D + T +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 767 VEVKSRKYALKIYHTGTTFYLSADSQDEFSSW------LGC--------------LSQAT 806
R K Y L + ++ L C LS AT
Sbjct: 231 QAELRRLLKSKPYENC---LLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 807 IAHDRSPVENITFSESEGEE---KSSDKSDSDKSKDHCFSSPKVKKM--SNFLTGPLTSS 861
H ++T + E + K D D ++ ++P+ + + G T
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 862 SSKHEKKFSSLKKKKEDNHHKSDHGNSSLDRKYLRFLSG-TNNVPVPTEHFRSYRRVAPG 920
+ KH + K + + RK LS + +PT
Sbjct: 346 NWKH----VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI----------- 390
Query: 921 TLS---DKLPSHDSSMTSMESTIARTSSPPLQLPPDMADYRLASLARAGHTTNVQREHNT 977
LS + D M + + Y L
Sbjct: 391 LLSLIWFDVIKSDV-MVVVNK---------------LHKYSLV----------------- 417
Query: 978 TLEAFMMSRQGEERRQNQSTSALRPPQQFAPSVPNSQLEDAACRTHIMRQIMANRYYFVM 1037
E++ +ST ++ P V + + + + Y
Sbjct: 418 ------------EKQPKESTISI-PSIYLELKVKLENEYA-------LHRSIVDHYNI-- 455
Query: 1038 VGREDNPLYQRGFSC-KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDM 1096
+ F ++Y+Y I H H+ + +
Sbjct: 456 ---------PKTFDSDDLIPPYLDQYFYSHIGH--------------HLKNIEHPERMTL 492
Query: 1097 MVSAFVTPTGVKFL---MVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINNWKPD 1153
F+ +FL + HDS ++ +L Y P+ N P +
Sbjct: 493 FRMVFLD---FRFLEQKIRHDSTAWNASGSILNTLQQL-KFYK--PYICDNDPKYERLVN 546
Query: 1154 QVADWLKGLDVSIHRY-----VESFLNNHVNG 1180
+ D+L ++ ++ + L
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 48.7 bits (115), Expect = 2e-05
Identities = 100/666 (15%), Positives = 170/666 (25%), Gaps = 216/666 (32%)
Query: 343 KNRKPLSGSFENAKEDVSI-DIENQNKSIQKEEPEDDL---------------------- 379
+ + LS + ++ D+++ KSI +E D +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 380 -------EDDDDDD----------EDNEPEEEEESISSPTSVRLY---HPKPRLPVQRRA 419
E+ + E +P RLY + V R
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQ 135
Query: 420 TITGTGASPTSKRAPLNLEQLWHELKLEKEWRLSGKQRKGEKSTSELLLSATSPSEVGSD 479
L L Q EL+ K + G G K+ + L +V
Sbjct: 136 PY-------------LKLRQALLELRPAKNVLIDGVLGSG-KTW--VALDVCLSYKVQCK 179
Query: 480 -ENKIH-LKSAPKACSADCLKSVQSDFVRRNKPDLNLLDSKFIAENEIPGKSLKETDQES 537
+ KI L L+ +Q + +D + + ++
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQ--------IDPNWTSRSDHS----------- 220
Query: 538 KKVNDPSLTEEESNMFIPLKERI-EIFNKK--------IDDSNSVHSMKPKVPAKRYVQN 588
N ++ + + K + + VQN
Sbjct: 221 --SNIKLRIHS-------IQAELRRLLKSKPYENCLLVLLN----------------VQN 255
Query: 589 ----EGF-----ISLTNSPAHRPTEKKPVARPRGKLDKSNSTPVYDFNDRPQG--ADEIE 637
F I LT T K V + +T + DE++
Sbjct: 256 AKAWNAFNLSCKILLT-------TRFKQVTDFLS----AATTTHISLDHHSMTLTPDEVK 304
Query: 638 LLLSRELKSRINIPASTLRSVLPGPSSIQNSPLR-AIIP-LKPKHKATS---PKVFRKKT 692
LL + L + L + +P R +II AT V K
Sbjct: 305 SLLLKYL----DCRPQDLP-----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 693 NLLRGKRRNISVKDLVMPDCEGW-----LFQRDRKIST-VPQWIRGWF---------IIK 737
S+ L + +F I T + I WF ++
Sbjct: 356 T----TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVN 409
Query: 738 GNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSRKYAL--KI---YHTGTTF---YLSA 789
H Y +K ++ + I + +E +YAL I Y+ TF L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLE---NEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 790 DSQDE-FSSWLGC-LSQATIAHDRSPVENITFSESEGEEKSSDKSDSDKSKDHCFSSPKV 847
D+ F S +G L + + D F K+
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-------------------DFRFLEQKI 507
Query: 848 KKMSNFLTGPLTSSSSKHEKKFSSLKKKKE---DNHHKSDHGNSSLDRKYLRFLSGTNNV 904
+ ++S LK K DN K L L FL
Sbjct: 508 RH-----DSTAWNASGSILNTLQQLKFYKPYICDNDPK----YERLVNAILDFLPKIEEN 558
Query: 905 PVPTEH 910
+ +++
Sbjct: 559 LICSKY 564
Score = 47.9 bits (113), Expect = 5e-05
Identities = 70/577 (12%), Positives = 141/577 (24%), Gaps = 186/577 (32%)
Query: 1484 KNRKPLSGSFENAKEDVSI-DIENQNKSIQKEEPEDDL---------------------- 1520
+ + LS + ++ D+++ KSI +E D +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 1521 -------EDDDDDD----------EDNEPEEEEESISSPTSVRLY---HPKPRLPVQRRA 1560
E+ + E +P RLY + V R
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQ 135
Query: 1561 TITGTGASPTSKRAPLNLEQLWHELKLEKEWRLSGKQRKGEKSTSELLLSATSPSEVGSD 1620
L L Q EL+ K + G G K+ + L +V
Sbjct: 136 PY-------------LKLRQALLELRPAKNVLIDGVLGSG-KTW--VALDVCLSYKVQCK 179
Query: 1621 -ENKIH-LKSAPKACSADCLKSVQSDFVRRNKPDLNLLDSKFIAENEIPGKSLKETDQES 1678
+ KI L L+ +Q + +D + + ++
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQ--------IDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 1679 KKVNDPSLTEEESNMFIPL-----KERIEIFN-----------KKIDDSNSVHSMKPKV- 1721
++ ++ N + L + FN K++ D S +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 1722 --PAKRYVQNEG---FISLTNSPAHR-PTEKKPVARPR-----GKLDKSNSTPVYDFNDR 1770
+ +E + + P E PR + + D
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIR-------DGLAT 343
Query: 1771 PQ-----GADE--------IELLLSRELKSR----------INIPAST-----RNEKPEA 1802
D+ + +L E + +IP +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 1803 QGQILQT-------EVDDKK-----HSC--DSSESPKHKATSPKVFRKKTNLLRGKRRNI 1848
++ E K+ S + +++ + N+ + +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD- 462
Query: 1849 SVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLF--IYLP- 1905
DL+ P + + + I G+H + + LF ++L
Sbjct: 463 ---DLIPPYLDQYFY---------------SHI--GHHLKNIEHPE--RMTLFRMVFLDF 500
Query: 1906 GFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFS 1942
F KI H T + S +
Sbjct: 501 RFLEQ------------KIRHDSTAWNASGSILNTLQ 525
Score = 45.2 bits (106), Expect = 3e-04
Identities = 99/790 (12%), Positives = 206/790 (26%), Gaps = 296/790 (37%)
Query: 8 DWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQ---HLLNLQPDDLEHH----GICKVGH 60
D ++ D + V+ + ++ + H++ D +
Sbjct: 20 DILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIM-SKDAVSGTLRLFWTLLSKQ 75
Query: 61 QEIILEAVDHLRNFHYELDHENLQLLALRVSCLAHSLHRELWNYSSPVVSTQTLSDVATI 120
+E++ + V+ + +Y+ L + E P + T+
Sbjct: 76 EEMVQKFVEEVLRINYKF--------------LMSPIKTE---QRQPSMMTRMY------ 112
Query: 121 IKAVKPLVCWLDRPPFSGQLAFIDKKAELLRLSLEMAFSGQRGKFADHPIENIRNSAKGL 180
I+ L + D F+ K + RL P +R + L
Sbjct: 113 IEQRDRL--YNDNQVFA--------KYNVSRL---------------QPYLKLR---QAL 144
Query: 181 SELADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQ 240
EL RP +++ G +G
Sbjct: 145 LEL--------------------------RPAKNVLI------DG--VLG---------- 160
Query: 241 SGK----IE-CGDEIVQINYQTVVGW-------DVKQVMALFEESSSDIFLTLKKRPCHS 288
SGK ++ C VQ + W + V+ + ++ I R HS
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 289 KILGQIYMKPYRLPSKKQVSYRWF-----------LDDKITPPRISHFDI--KPLGHALV 335
+ R+ S + R L + + F++ K L
Sbjct: 221 SNI------KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----- 269
Query: 336 NSVTSFTKNRKPLSGSFENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEE 395
+T T+ K+ I + L P+E +
Sbjct: 270 --LT--TRF-----------KQVTDFLSAATTTHISLDHHSMTLT----------PDEVK 304
Query: 396 ESISSPTSVRLYHPKPRLPVQRRATITGTGASPTSKRAPLNLEQLWHELKLE----KEWR 451
+ R LP + P L + ++ W+
Sbjct: 305 SLLLKYLDCRP----QDLPRE------------VLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 452 LSGKQRKGEKSTSELLLSATSPSEVGSDENKIHLKSAPKACSADCLKSVQSDFVRRNKPD 511
+ + E L+ P+E + SV F P
Sbjct: 349 HVNCDKL--TTIIESSLNVLEPAEY-------------RKMFDRL--SV---F-----PP 383
Query: 512 LNLLDSKFIAENEIPGKSL-------KETDQES--KKVNDPSLTEEESNMFIPLKERIEI 562
+ IP L ++D K++ SL E++ + I I
Sbjct: 384 ----SAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-----ESTISI 428
Query: 563 ------FNKKIDDSNSVHSMKPKVPAKRYVQNEGFISLTNSPAHRPTEKKPVARPRGKLD 616
K+++ ++H + Y D
Sbjct: 429 PSIYLELKVKLENEYALH----RSIVDHY------------------------NIPKTFD 460
Query: 617 KSNSTPVYDFN----------DRPQGADEIELL----LS-RELKSRINIPASTLRSVLPG 661
+ P Y + + + L L R L+ +I ++ +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 662 PSSIQNSPLRA----IIPLKPKHKATSPK----VFRKKTNLLRGKRRNISVKDLVMPDCE 713
+++Q L+ I PK++ + + + NL+ K ++ ++ +M + E
Sbjct: 521 LNTLQQ--LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIALMAEDE 577
Query: 714 GWLFQRDRKI 723
+ +++
Sbjct: 578 AIFEEAHKQV 587
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering
regulation, trapp complex, TR network, transport protein;
1.80A {Saccharomyces cerevisiae}
Length = 162
Score = 76.2 bits (187), Expect = 8e-16
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 13/127 (10%)
Query: 1034 YFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQV--WQTDHMYLKTID 1091
+ ++ D P+ + E N+ Y +++ SLD + + W +
Sbjct: 12 FVSLIDESDKPILIYVPNEAENEMNDVLKYN-VLSNISLDYFESALVEWHSLDSKPLLKS 70
Query: 1092 KFNDMMVSAF---VTPTGVKFLMVHDSKN-------EEGIKKFFTSVYELFIKYSLNPFY 1141
F VS F + TG+K ++ + K+ E I + F +V +++I+ NP
Sbjct: 71 IFQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLL 130
Query: 1142 KINTPIN 1148
+
Sbjct: 131 VSGDEKS 137
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 74.3 bits (183), Expect = 8e-16
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTV-APAVEVKS 771
EG+L ++ +T W W ++ + + K I L G T+ +P +
Sbjct: 8 EGYLVKKGSVFNT---WKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGK 64
Query: 772 RKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQAT 806
R + KI T + A +E +W+ +++A
Sbjct: 65 RMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100
Score = 74.3 bits (183), Expect = 8e-16
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTV-APAVEVKS 1917
EG+L ++ +T W W ++ + + K I L G T+ +P +
Sbjct: 8 EGYLVKKGSVFNT---WKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGK 64
Query: 1918 RKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQAT 1952
R + KI T + A +E +W+ +++A
Sbjct: 65 RMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 72.8 bits (179), Expect = 3e-15
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTV--APAV 767
P GWL ++ + W + +F+++ Y + D++ TK +YLPG T+
Sbjct: 8 PIKMGWLKKQRSIVKN---WQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATN 64
Query: 768 EVKSRKYALKIYHTGT--------TFYLSADSQDEFSSWLGCLSQAT 806
++ K+ +I ++ L A SQ E W+ L +
Sbjct: 65 PEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111
Score = 72.8 bits (179), Expect = 3e-15
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTV--APAV 1913
P GWL ++ + W + +F+++ Y + D++ TK +YLPG T+
Sbjct: 8 PIKMGWLKKQRSIVKN---WQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATN 64
Query: 1914 EVKSRKYALKIYHTGT--------TFYLSADSQDEFSSWLGCLSQAT 1952
++ K+ +I ++ L A SQ E W+ L +
Sbjct: 65 PEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 71.3 bits (175), Expect = 1e-14
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 769
EG+L ++ + T W WF + N F D+ S + + L +
Sbjct: 18 GTKEGYLTKQGGLVKT---WKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS 74
Query: 770 KSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFS 820
+ R + TFYL A + E W+ L + ++ R + +
Sbjct: 75 QERVNCFCLVFPFRTFYLCAKTGVEADEWIKIL-RWKLSQIRKQLNQGEGT 124
Score = 71.3 bits (175), Expect = 1e-14
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 1915
EG+L ++ + T W WF + N F D+ S + + L +
Sbjct: 18 GTKEGYLTKQGGLVKT---WKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS 74
Query: 1916 KSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFS 1966
+ R + TFYL A + E W+ L + ++ R + +
Sbjct: 75 QERVNCFCLVFPFRTFYLCAKTGVEADEWIKIL-RWKLSQIRKQLNQGEGT 124
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 70.4 bits (172), Expect = 3e-14
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 29/130 (22%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 769
PD EGWL + ++ T W R WFI+ N Y F + I L ++ ++
Sbjct: 5 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDP 61
Query: 770 KSRKYALKIYHTG----------------------TTFYLSADSQDEFSSWLGCLSQATI 807
+ + ++Y+ + +SA S +E W+ + +
Sbjct: 62 R-KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI- 119
Query: 808 AHDRSPVENI 817
R P ++
Sbjct: 120 --SRDPFYDM 127
Score = 70.4 bits (172), Expect = 3e-14
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 29/130 (22%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 1915
PD EGWL + ++ T W R WFI+ N Y F + I L ++ ++
Sbjct: 5 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDP 61
Query: 1916 KSRKYALKIYHTG----------------------TTFYLSADSQDEFSSWLGCLSQATI 1953
+ + ++Y+ + +SA S +E W+ + +
Sbjct: 62 R-KPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI- 119
Query: 1954 AHDRSPVENI 1963
R P ++
Sbjct: 120 --SRDPFYDM 127
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 68.9 bits (168), Expect = 2e-13
Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 711 DCEGWLF---QRDRKISTVPQWIRGWFIIK------GNHFYGFTDKDSTKAHLFIYLPGF 761
GWL+ T+ + R +F + N + +K S + I+L
Sbjct: 19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSC 78
Query: 762 TVAPAVEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFS 820
K R++A ++ +++ L+ADS+ E W+ L++ + + ++
Sbjct: 79 MGVVQNN-KVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNG 137
Query: 821 ESEGEEKSS 829
+S +++S
Sbjct: 138 DSHEDDESG 146
Score = 68.9 bits (168), Expect = 2e-13
Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 1857 DCEGWLF---QRDRKISTVPQWIRGWFIIK------GNHFYGFTDKDSTKAHLFIYLPGF 1907
GWL+ T+ + R +F + N + +K S + I+L
Sbjct: 19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSC 78
Query: 1908 TVAPAVEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFS 1966
K R++A ++ +++ L+ADS+ E W+ L++ + + ++
Sbjct: 79 MGVVQNN-KVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNG 137
Query: 1967 ESEGEEKSS 1975
+S +++S
Sbjct: 138 DSHEDDESG 146
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 70.8 bits (173), Expect = 2e-13
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 12/128 (9%)
Query: 698 KRRNISVKDLVM--------PDCEGWLFQR--DRKISTVPQWIRGWFIIKGNHFYGFTDK 747
KRR +KD +GWL + W + WF+++ + F +
Sbjct: 38 KRRWCVLKDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFEND 97
Query: 748 DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATI 807
K + + + +++ + I TF+L A+S ++ S W LSQ
Sbjct: 98 SEEKLKGTVEVRSAKEII--DNTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHS 155
Query: 808 AHDRSPVE 815
+ D+ E
Sbjct: 156 STDQEIRE 163
Score = 70.8 bits (173), Expect = 2e-13
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 12/128 (9%)
Query: 1844 KRRNISVKDLVM--------PDCEGWLFQR--DRKISTVPQWIRGWFIIKGNHFYGFTDK 1893
KRR +KD +GWL + W + WF+++ + F +
Sbjct: 38 KRRWCVLKDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFEND 97
Query: 1894 DSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATI 1953
K + + + +++ + I TF+L A+S ++ S W LSQ
Sbjct: 98 SEEKLKGTVEVRSAKEII--DNTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHS 155
Query: 1954 AHDRSPVE 1961
+ D+ E
Sbjct: 156 STDQEIRE 163
Score = 30.7 bits (69), Expect = 4.8
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 765 PAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 805
A + R + I + +AD+ +E W+ L ++
Sbjct: 187 CASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLLQRS 227
Score = 30.7 bits (69), Expect = 4.8
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 1911 PAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 1951
A + R + I + +AD+ +E W+ L ++
Sbjct: 187 CASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLLQRS 227
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 67.0 bits (164), Expect = 3e-13
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAVEVKS 771
+G++ ++ + W WF++K N + +D I L V +
Sbjct: 11 QGYMMKKGHRRKN---WTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDG 67
Query: 772 RKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 805
+K + TF +SA + + W+ +
Sbjct: 68 KKCLFLVKCFDKTFEISASDKKKKQEWIQAIHST 101
Score = 67.0 bits (164), Expect = 3e-13
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG-FTVAPAVEVKS 1917
+G++ ++ + W WF++K N + +D I L V +
Sbjct: 11 QGYMMKKGHRRKN---WTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDG 67
Query: 1918 RKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 1951
+K + TF +SA + + W+ +
Sbjct: 68 KKCLFLVKCFDKTFEISASDKKKKQEWIQAIHST 101
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 68.3 bits (166), Expect = 4e-13
Identities = 25/163 (15%), Positives = 62/163 (38%), Gaps = 17/163 (10%)
Query: 713 EGWLFQRD-------RKISTVPQWIRGWFIIKGNHFYGFTDKDSTK----AHLFIYLPGF 761
EGWL R R ++ W + + +++G+ Y + DK I +
Sbjct: 6 EGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNAC 65
Query: 762 TVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSE 821
+ + RK ++ + A+ +D+ +W+ + +++ ++ E+ +
Sbjct: 66 LIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNE----EDTGVTN 121
Query: 822 SEGEEKSSDKSDSDKSKDHCFSSPKVKKMSNFLTGPLTSSSSK 864
+ + + ++ SK PK + S + L + S+
Sbjct: 122 RDLISRRIKEYNNLMSKAE--QLPKTPRQSLSIRQTLLGAKSE 162
Score = 68.3 bits (166), Expect = 4e-13
Identities = 25/163 (15%), Positives = 62/163 (38%), Gaps = 17/163 (10%)
Query: 1859 EGWLFQRD-------RKISTVPQWIRGWFIIKGNHFYGFTDKDSTK----AHLFIYLPGF 1907
EGWL R R ++ W + + +++G+ Y + DK I +
Sbjct: 6 EGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNAC 65
Query: 1908 TVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSE 1967
+ + RK ++ + A+ +D+ +W+ + +++ ++ E+ +
Sbjct: 66 LIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNE----EDTGVTN 121
Query: 1968 SEGEEKSSDKSDSDKSKDHCFSSPKVKKMSNFLTGPLTSSSSK 2010
+ + + ++ SK PK + S + L + S+
Sbjct: 122 RDLISRRIKEYNNLMSKAE--QLPKTPRQSLSIRQTLLGAKSE 162
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 67.3 bits (164), Expect = 5e-13
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 13/129 (10%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH--LFIYLPGFTVAPAV 767
P+ + L + T+ + + W + K + +D + L G V P V
Sbjct: 9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDV 68
Query: 768 EVKSRKYALKIYHTGT----TFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSESE 823
V +K+ +K+ YL + +++ W+ A+ + S
Sbjct: 69 NVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMA-------DSSY 121
Query: 824 GEEKSSDKS 832
E + +
Sbjct: 122 TSEVQAILA 130
Score = 67.3 bits (164), Expect = 5e-13
Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 13/129 (10%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH--LFIYLPGFTVAPAV 1913
P+ + L + T+ + + W + K + +D + L G V P V
Sbjct: 9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDV 68
Query: 1914 EVKSRKYALKIYHTGT----TFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSESE 1969
V +K+ +K+ YL + +++ W+ A+ + S
Sbjct: 69 NVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASKGRTMA-------DSSY 121
Query: 1970 GEEKSSDKS 1978
E + +
Sbjct: 122 TSEVQAILA 130
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 65.5 bits (160), Expect = 8e-13
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
L+KR GE LG ++ S G I ++ A +SG + GD + IN ++VG
Sbjct: 14 HLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGL 73
Query: 262 DVKQVMALFEESSSDIFLTLKKRPC 286
+ A E+ S +TL C
Sbjct: 74 PLAACQAAVRETKSQTSVTLSIVHC 98
Score = 65.5 bits (160), Expect = 8e-13
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
L+KR GE LG ++ S G I ++ A +SG + GD + IN ++VG
Sbjct: 14 HLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGL 73
Query: 1403 DVKQVMALFEESSSDIFLTLKKRPC 1427
+ A E+ S +TL C
Sbjct: 74 PLAACQAAVRETKSQTSVTLSIVHC 98
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 65.6 bits (160), Expect = 2e-12
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFT---VAPAVE 768
G+ ++ + W R +F + N F + + I L +
Sbjct: 16 KAGYCVKQGAVMKN---WKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSD 72
Query: 769 VKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAH 809
+ R +I T TFY+ ADS +E SW+ +S A +A
Sbjct: 73 IMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113
Score = 65.6 bits (160), Expect = 2e-12
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFT---VAPAVE 1914
G+ ++ + W R +F + N F + + I L +
Sbjct: 16 KAGYCVKQGAVMKN---WKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSD 72
Query: 1915 VKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAH 1955
+ R +I T TFY+ ADS +E SW+ +S A +A
Sbjct: 73 IMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 71.2 bits (174), Expect = 4e-12
Identities = 84/538 (15%), Positives = 143/538 (26%), Gaps = 175/538 (32%)
Query: 515 LDSKFIAENEIPGKSLKETDQESKKVN---------DPSLTEEESNMFIP-LKERIEIFN 564
L +F P + D+ + + + F L + F
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 565 KKIDDSNSVHSM-------------KPKVPAKRYVQNEGFISLTNSPAHRPTEKKPVARP 611
+ N +H++ K K K Y+ A RP +K +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT-------ARIMAKRPFDK----KS 141
Query: 612 RGKLDKS---NSTPVYD-FNDRPQGADEI---ELLLSREL--------KSRINIPASTLR 656
L ++ + + F QG + EL R+L I A TL
Sbjct: 142 NSALFRAVGEGNAQLVAIFGG--QGNTDDYFEEL---RDLYQTYHVLVGDLIKFSAETLS 196
Query: 657 SVLPGPSSIQNSPLRAIIPLKPKHKATSPKVFRKKTNLLRGKRRNISVKDLVMPDCEGWL 716
++ + KVF + N+L WL
Sbjct: 197 ELIRTTLD-------------------AEKVFTQGLNILE------------------WL 219
Query: 717 FQRDRK----------ISTVPQWIRGWFIIKGNHFYGFTDK-DSTKAHLFIYLPGFTV-A 764
IS P I +I+ H+ T L YL G T +
Sbjct: 220 ENPSNTPDKDYLLSIPIS-CPL-I---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 765 PAVEVKSRKYALKIYHTGT--TFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSES 822
+ A+ I T + +F++S ++G + P + S
Sbjct: 275 QGLVT-----AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 823 EGEEKSS--------DKSDSDKSKDHCFSS-PKVKKMS--------NF-LTGP---LTSS 861
E S + + S P K++ N ++GP L
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 862 SSKHEKKFSSLKKKKEDNHHKSDHGNSSLDRK---YLRFLSGTNNVPVPTEHFRS-YRRV 917
+ K K + + +RK RFL PV F S
Sbjct: 390 NLTLRK----AKAPSGLDQSRIPFS----ERKLKFSNRFL------PV-ASPFHSHLLVP 434
Query: 918 APGTLSDKLPSHDSSMTSMESTIARTSSPPLQLP----PDMADYR------LASLARA 965
A ++ L ++ S ++ +Q+P D +D R +
Sbjct: 435 ASDLINKDLVKNNVSF----------NAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 68.5 bits (167), Expect = 3e-11
Identities = 79/532 (14%), Positives = 141/532 (26%), Gaps = 158/532 (29%)
Query: 1656 LDSKFIAENEIPGKSLKETDQESKKVN---------DPSLTEEESNMFIP-LKERIEIFN 1705
L +F P + D+ + + + F L + F
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 1706 KKIDDSNSVHSM-------------KPKVPAKRYVQNEGFISLTNSPAHRPTEKKPVARP 1752
+ N +H++ K K K Y+ A RP +K +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT-------ARIMAKRPFDK----KS 141
Query: 1753 RGKLDKS---NSTPVYD-FNDRPQGADEIELLLSRELKSRINIPASTRNEKPEAQGQILQ 1808
L ++ + + F QG + EL+ + + + L
Sbjct: 142 NSALFRAVGEGNAQLVAIFGG--QGNTDDYF---EELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 1809 TEVDDKKHSCDSSESPKHKATSPKVFRKKTNLLRGKRRNISVKDLVMPDCEGWLFQRDRK 1868
+ + + KVF + N+L WL
Sbjct: 197 ELI-------------RTTLDAEKVFTQGLNILE------------------WLENPSNT 225
Query: 1869 ----------ISTVPQWIRGWFIIKGNHFYGFTDK-DSTKAHLFIYLPGFTV-APAVEVK 1916
IS P I +I+ H+ T L YL G T + +
Sbjct: 226 PDKDYLLSIPIS-CPL-I---GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT- 279
Query: 1917 SRKYALKIYHTGT--TFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSESEGEEKS 1974
A+ I T + +F++S ++G + P + S E
Sbjct: 280 ----AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 1975 S--------DKSDSDKSKDHCFSS-PKVKKMS--------NF-LTGP---LTSSSSKHEK 2013
S + + S P K++ N ++GP L + K
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 2014 KFSSLKKKKEDNHHKSDHGNSSLDRK---YLRFLSGTNNVPVPTEHFRS-YRRVAPGTLS 2069
K + + +RK RFL PV F S A ++
Sbjct: 396 ----AKAPSGLDQSRIPFS----ERKLKFSNRFL------PV-ASPFHSHLLVPASDLIN 440
Query: 2070 DKLPSHDSSMTSMESTIARTSSPPLQLP----PDMADYR------LASLARA 2111
L ++ S ++ +Q+P D +D R +
Sbjct: 441 KDLVKNNVSF----------NAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 63.9 bits (155), Expect = 6e-10
Identities = 107/692 (15%), Positives = 196/692 (28%), Gaps = 242/692 (34%)
Query: 885 HGNSSLDRKYLRFLSGTNNVPVPTEHFRSYRRVAPGTLSDK----LPSHDSSMTSMESTI 940
HG+ L + VPT F + L ++ LP + +
Sbjct: 13 HGS-------LEH-----VLLVPTASFFIASQ-----LQEQFNKILPEPTEGFAADDEP- 54
Query: 941 ARTSSPPLQLPPDMADY-----RLASLARAGHTTNVQREHNTTLEAFMMSRQGEERR--Q 993
T+ L + + L ++ G V L F E +
Sbjct: 55 --TTPAEL-----VGKFLGYVSSLVEPSKVGQFDQVLN---LCLTEF-------ENCYLE 97
Query: 994 NQSTSALRPPQQFAPSVPNSQLEDAACRTHIMRQIMANRYY--FVMVGREDNPLYQRGFS 1051
AL A + +++ Y +M R P ++ S
Sbjct: 98 GNDIHAL------AAKLLQENDTTLVKTKELIKN-----YITARIMAKR---PFDKKSNS 143
Query: 1052 C--KEANDNENKYYYEF----IAHASLDLLDE--QVWQTDHMYLKTIDKFNDMMVSAFVT 1103
+ + + F + D +E ++QT Y ++V +
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQG---NTDDYFEELRDLYQT---Y--------HVLVGDLIK 189
Query: 1104 PTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINNW------KPDQVAD 1157
+ + +K FT + W PD+ D
Sbjct: 190 FSAETLS--ELIRTTLDAEKVFTQGLNIL----------------EWLENPSNTPDK--D 229
Query: 1158 WLKGLDVSI---------HRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEA 1208
+L + +S H V + LL P +L + GH + ++ A
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTA---------KLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 1209 V-----DHLRNFHYELDHENLQLL---------ALRVSCLAHSLHRELWNYS----SP-- 1248
V D +F + + + +L A + L S+ + + SP
Sbjct: 281 VAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 1249 VVSTQTLSDVATIIKAV-KPLVCWLDRPPFSGQLAFIDKKAELLRLSLEMAFSGQRGKF- 1306
+S T V + L P Q+ +SL +G +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHL-------PAGKQVE----------ISL---VNGAK-NLV 378
Query: 1307 -ADHPIENIRNSAKGLSELADEMIREIHDPLLL-Q---PSSLDLATLKKRPGEHLGFCII 1361
+ P S GL + +R+ P L Q P S +++ F +
Sbjct: 379 VSGPPQ-----SLYGL----NLTLRKAKAPSGLDQSRIPFS------ERKLKFSNRFLPV 423
Query: 1362 --PSFH------GIHQI-GDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFE 1412
P FH I D+ N+ ++ + I+ V Y T G D++ +
Sbjct: 424 ASP-FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---V---YDTFDGSDLRVLSGSIS 476
Query: 1413 ESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQVSYRWFLDDKITPPRISHF-DIKPL 1471
E D + L P W + T + +H D P
Sbjct: 477 ERIVDCIIRL---PVK-----------------------W---ETTTQFKATHILDFGPG 507
Query: 1472 GHALVNSVTSFTKN----RKPLSGSFENAKED 1499
G + + +T K+ R ++G+ + +D
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 50.4 bits (120), Expect = 9e-06
Identities = 72/411 (17%), Positives = 130/411 (31%), Gaps = 140/411 (34%)
Query: 4 VNVADW------KPDQVADWLKGLDVSI---------HRYVESFLNNHVNGQHLLNLQPD 48
+N+ +W PD+ D+L + +S H V + LL P
Sbjct: 213 LNILEWLENPSNTPDK--DYLLSIPISCPLIGVIQLAHYVVTA---------KLLGFTPG 261
Query: 49 DLEHHGICKVGHQEIILEAV-----DHLRNFHYELDHENLQLL---------ALRVSCLA 94
+L + GH + ++ AV D +F + + + +L A + L
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 95 HSLHRELWNYS----SP--VVSTQTLSDVATIIKAV-KPLVCWLDRPPFSGQLAFIDKKA 147
S+ + + SP +S T V + L P Q+
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL-------PAGKQVE------ 367
Query: 148 ELLRLSLEMAFSGQRGKF--ADHPIENIRNSAKGLSELADEMIREIHDPLLL-Q---PSS 201
+SL +G + + P S GL + +R+ P L Q P S
Sbjct: 368 ----ISL---VNGAK-NLVVSGPPQ-----SLYGL----NLTLRKAKAPSGLDQSRIPFS 410
Query: 202 LDLATLKKRPGEHLGFCII--PSFH------GIHQI-GDIKCNSTAYQSGKIECGDEIVQ 252
+++ F + P FH I D+ N+ ++ + I+ V
Sbjct: 411 ------ERKLKFSNRFLPVASP-FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---V- 459
Query: 253 INYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQVSYRWF 312
Y T G D++ + E D + L P W
Sbjct: 460 --YDTFDGSDLRVLSGSISERIVDCIIRL---PVK-----------------------W- 490
Query: 313 LDDKITPPRISHF-DIKPLGHALVNSVTSFTKN----RKPLSGSFENAKED 358
+ T + +H D P G + + +T K+ R ++G+ + +D
Sbjct: 491 --ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 34.6 bits (79), Expect = 0.54
Identities = 44/277 (15%), Positives = 78/277 (28%), Gaps = 117/277 (42%)
Query: 99 RELWNYSSPVVSTQTLSDVATIIKAVKPLVCWLDR--PPFSGQLAF-IDKKAELLR---L 152
+L Y + S A + V W +R F F I +++ +
Sbjct: 1633 MDL--YKT--------SKAA---QDV-----W-NRADNHFKDTYGFSI---LDIVINNPV 1670
Query: 153 SLEMAFSGQRGK--------FADHPIENIRNSAKGLSELADEMIREI---HDPLLL---- 197
+L + F G++GK I + + + + + +E + LL
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 198 --QPS---------------------------SL----------------DLATL-KKRP 211
QP+ SL L + R
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR- 1789
Query: 212 GEHLGFCIIPSFHGIHQIGDIKCN-STAYQSGKIEC-----------GDEIVQI-NY--- 255
G + + G G I N S E +V+I NY
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 256 --QTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKI 290
Q V D++ AL ++ +++ +K + KI
Sbjct: 1850 NQQYVAAGDLR---AL--DTVTNVLNFIKLQ----KI 1877
Score = 34.6 bits (79), Expect = 0.54
Identities = 44/277 (15%), Positives = 78/277 (28%), Gaps = 117/277 (42%)
Query: 1240 RELWNYSSPVVSTQTLSDVATIIKAVKPLVCWLDR--PPFSGQLAF-IDKKAELLR---L 1293
+L Y + S A + V W +R F F I +++ +
Sbjct: 1633 MDL--YKT--------SKAA---QDV-----W-NRADNHFKDTYGFSI---LDIVINNPV 1670
Query: 1294 SLEMAFSGQRGK--------FADHPIENIRNSAKGLSELADEMIREI---HDPLLL---- 1338
+L + F G++GK I + + + + + +E + LL
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 1339 --QPS---------------------------SL----------------DLATL-KKRP 1352
QP+ SL L + R
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR- 1789
Query: 1353 GEHLGFCIIPSFHGIHQIGDIKCN-STAYQSGKIEC-----------GDEIVQI-NY--- 1396
G + + G G I N S E +V+I NY
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 1397 --QTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKI 1431
Q V D++ AL ++ +++ +K + KI
Sbjct: 1850 NQQYVAAGDLR---AL--DTVTNVLNFIKLQ----KI 1877
Score = 33.5 bits (76), Expect = 1.2
Identities = 86/601 (14%), Positives = 157/601 (26%), Gaps = 233/601 (38%)
Query: 346 KPLS---GSFENAKEDVSIDIENQ---NKSIQKEEPEDDLEDDDDD-DEDNEPEEEEESI 398
+PL+ GS E + + S +E+ L + + D+EP E +
Sbjct: 7 RPLTLSHGSLE-----HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 399 SSPTSVR-LYHPKPRLPVQRRATITGTGASPTSKRAPLNLEQLWHELKLEKEWRLSGKQR 457
+ L + V S + + L E E + L G
Sbjct: 62 G-----KFLGY------VSSLVE-----PSKVGQFDQV-LNLCLTE--FENCY-LEGN-- 99
Query: 458 KGEKSTSEL-LLSATSPSEVGSDENKIH--LKSAPKACSADCLKSVQSDFVRRNKPDLNL 514
++ L+A E + K +K+ A +P
Sbjct: 100 -------DIHALAAKLLQENDTTLVKTKELIKNYITARIMA------------KRPFDKK 140
Query: 515 LDSKFIAENEIPGKSLKETDQESKKV---------NDPSLTEEESNMFIPLKERIEIFNK 565
+S + + + ++ D E L++ + ++
Sbjct: 141 SNSAL----------FRAVGEGNAQLVAIFGGQGNTDDYFEE--------LRDLYQTYHV 182
Query: 566 KIDD-----SNSVHSMKPKVPAKRYVQNEGF--ISLTNSPAHRPTE----KKPVARP--- 611
+ D + ++ + V +G + +P++ P + P++ P
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 612 -------RGKLDKSNSTPVYDFNDRPQG----------------ADE-----------IE 637
TP + +G D I
Sbjct: 243 VIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 638 LLL-----SRELKSRINIPASTLRSVLPGPSSIQN-----SPLRAIIPLKPKHKATSPKV 687
+L E ++P S L S++N SP+ +I L + V
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILE------DSLENNEGVPSPMLSISNLTQEQ------V 349
Query: 688 FR--KKTN--LLRGKRRNISVKDLV-MPDCEGWLFQRDRKISTVPQWIRGWFIIKGN--H 740
KTN L GK+ IS LV ++ G
Sbjct: 350 QDYVNKTNSHLPAGKQVEIS---LVNGAKN---------------------LVVSGPPQS 385
Query: 741 FYGF----------TDKDSTKAHL------FI--YLPGFTV-------APAVE------- 768
YG + D ++ F +LP PA +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHSHLLVPASDLINKDLV 444
Query: 769 ---VKSRKYALKI--YHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPV--ENITFSE 821
V ++I Y T +D + S + I R PV E T +
Sbjct: 445 KNNVSFNAKDIQIPVYDTFD----GSDLRVLSGSISERIVDCII---RLPVKWETTTQFK 497
Query: 822 S 822
+
Sbjct: 498 A 498
Score = 31.6 bits (71), Expect = 3.7
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 32/100 (32%)
Query: 1 MAYVNVADWKPDQVADWLKGLDVSIHRYVESFLNNH------VNGQHLLNLQPDDLEHHG 54
M +N P +VA ++ VE VN N++
Sbjct: 1809 MIAIN-----PGRVA--ASFSQEALQYVVERVGKRTGWLVEIVN----YNVE-------- 1849
Query: 55 ICKVGHQEII---LEAVDHLRNFHYELDHENLQLLALRVS 91
Q + L A+D + N + + + ++ L+ S
Sbjct: 1850 ----NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Score = 30.4 bits (68), Expect = 8.8
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 12/58 (20%)
Query: 1487 KPLS---GSFENAKEDVSIDIENQ---NKSIQKEEPEDDLEDDDDD-DEDNEPEEEEE 1537
+PL+ GS E + + S +E+ L + + D+EP E
Sbjct: 7 RPLTLSHGSLE-----HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 63.0 bits (153), Expect = 5e-12
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 64
++ W D V+++++ L YV+ F+ ++GQ LL L+ L + K+G I
Sbjct: 13 PISSWSVDDVSNFIRELPGC-QDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKI 71
Query: 65 LEAVDHLRNFHYELDHEN 82
+ V+ ++ H +
Sbjct: 72 VAKVESIKEVRDHHHHHH 89
Score = 62.6 bits (152), Expect = 7e-12
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 1205
PI++W D V+++++ L YV+ F+ ++GQ LL L+ L + K+G I
Sbjct: 13 PISSWSVDDVSNFIRELPGC-QDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKI 71
Query: 1206 LEAVDHLRNFHYELDHEN 1223
+ V+ ++ H +
Sbjct: 72 VAKVESIKEVRDHHHHHH 89
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 62.2 bits (151), Expect = 9e-12
Identities = 15/77 (19%), Positives = 34/77 (44%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 64
DW ++V +++ D S+ + + F + ++G+ LL L + + + K+G I
Sbjct: 13 QPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKI 72
Query: 65 LEAVDHLRNFHYELDHE 81
V+ + + H
Sbjct: 73 CNLVNKVNGRDHHHHHH 89
Score = 60.7 bits (147), Expect = 3e-11
Identities = 14/81 (17%), Positives = 36/81 (44%)
Query: 1142 KINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGH 1201
+ + +W ++V +++ D S+ + + F + ++G+ LL L + + + K+G
Sbjct: 9 HLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGP 68
Query: 1202 QEIILEAVDHLRNFHYELDHE 1222
I V+ + + H
Sbjct: 69 ALKICNLVNKVNGRDHHHHHH 89
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 61.2 bits (149), Expect = 2e-11
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
L K+ G+ LG + P+ G I D+ K++ GD I + N + G +
Sbjct: 13 DLMKKAGKELGLSLSPNEIGCT-IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 71
Query: 266 VMALFEESSSDIFLTLKKRP 285
ALF+ ++ + + + +
Sbjct: 72 SYALFKGANGKVSMEVTRPK 91
Score = 61.2 bits (149), Expect = 2e-11
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
L K+ G+ LG + P+ G I D+ K++ GD I + N + G +
Sbjct: 13 DLMKKAGKELGLSLSPNEIGCT-IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 71
Query: 1407 VMALFEESSSDIFLTLKKRP 1426
ALF+ ++ + + + +
Sbjct: 72 SYALFKGANGKVSMEVTRPK 91
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 62.0 bits (150), Expect = 3e-11
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 16/122 (13%)
Query: 710 PDCEGWL----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIY-------- 757
P EG L ++ + + W R W ++ G + K Y
Sbjct: 1 PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60
Query: 758 -LPGFTVAPAVEVKSRKYALKIYHT--GTTFYLSADSQDEFSSWLGCLSQATIAHDRSPV 814
+ G+ V + + ++ + G + S+ W L A +
Sbjct: 61 SIVGWMVQLPDDPE-HPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQVP 119
Query: 815 EN 816
N
Sbjct: 120 AN 121
Score = 62.0 bits (150), Expect = 3e-11
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 16/122 (13%)
Query: 1856 PDCEGWL----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIY-------- 1903
P EG L ++ + + W R W ++ G + K Y
Sbjct: 1 PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60
Query: 1904 -LPGFTVAPAVEVKSRKYALKIYHT--GTTFYLSADSQDEFSSWLGCLSQATIAHDRSPV 1960
+ G+ V + + ++ + G + S+ W L A +
Sbjct: 61 SIVGWMVQLPDDPE-HPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQVP 119
Query: 1961 EN 1962
N
Sbjct: 120 AN 121
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 61.7 bits (150), Expect = 3e-11
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYLPGFTVAPAV 767
+G L ++ + W FI++ + Y + + I+L G V
Sbjct: 19 IKQGCLLKQGHRRKN---WKVRKFILREDPAYLHY-YDPAGAEDPLGAIHLRGCVVTSVE 74
Query: 768 EVKS-----RKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATIAHDRSP 813
+ + +I ++L A + E + W+ + A+ P
Sbjct: 75 SNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRTGKSGP 126
Score = 61.7 bits (150), Expect = 3e-11
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYLPGFTVAPAV 1913
+G L ++ + W FI++ + Y + + I+L G V
Sbjct: 19 IKQGCLLKQGHRRKN---WKVRKFILREDPAYLHY-YDPAGAEDPLGAIHLRGCVVTSVE 74
Query: 1914 EVKS-----RKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQATIAHDRSP 1959
+ + +I ++L A + E + W+ + A+ P
Sbjct: 75 SNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRTGKSGP 126
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Length = 265
Score = 64.5 bits (156), Expect = 5e-11
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 1142 KINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH-GICKVG 1200
++ P W +QV WL + Y+ S + ++GQ LL DLE GI
Sbjct: 10 DLDMPFAKWTKEQVCSWLAEQGLG--SYLSSGKHWIISGQTLLQASQQDLEKELGIKHSL 67
Query: 1201 HQEIILEAVDHLRNFHY 1217
H++ + A+ L +
Sbjct: 68 HRKKLQLALQALGSEEE 84
Score = 62.2 bits (150), Expect = 3e-10
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH-GICKVGHQEII 64
A W +QV WL + Y+ S + ++GQ LL DLE GI H++ +
Sbjct: 15 FAKWTKEQVCSWLAEQGLG--SYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKL 72
Query: 65 LEAVDHLRNFHY 76
A+ L +
Sbjct: 73 QLALQALGSEEE 84
Score = 53.7 bits (128), Expect = 2e-07
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 1110 LMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINNWKPDQVADWLKGLDVSIHRY 1169
D + E GIK + + T + V WL D+ + +Y
Sbjct: 52 ASQQDLEKELGIKHSLHR--KKLQLALQALGSEEETNYGKLDFNWVTRWLD--DIGLPQY 107
Query: 1170 VESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFHYE 1218
F V+G+ L + DDL + V H I A+ LR ++E
Sbjct: 108 KTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFE 156
Score = 50.2 bits (119), Expect = 3e-06
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 27 RYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLRNFHYE 77
+Y F V+G+ L + DDL + V H I A+ LR ++E
Sbjct: 106 QYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFE 156
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 60.9 bits (148), Expect = 6e-11
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSR 772
GWL + + + + W G + ++ + I L + V V+
Sbjct: 11 SGWLDKLSPQ--GKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAIS---TVRVQ-G 64
Query: 773 KYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSES 822
++ T TF + ++E + W+ L A + + + S
Sbjct: 65 DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQASGPSS 114
Score = 60.9 bits (148), Expect = 6e-11
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSR 1918
GWL + + + + W G + ++ + I L + V V+
Sbjct: 11 SGWLDKLSPQ--GKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAIS---TVRVQ-G 64
Query: 1919 KYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSES 1968
++ T TF + ++E + W+ L A + + + S
Sbjct: 65 DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLTSQSQASGPSS 114
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 60.7 bits (147), Expect = 7e-11
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 713 EGWL-----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIY--------LP 759
EG++ + K ++ W + + K + D+ K++ + L
Sbjct: 11 EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQ 70
Query: 760 GFTVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQAT 806
+ A + +K+ L++ G F L A E S W+ L +
Sbjct: 71 NAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118
Score = 60.7 bits (147), Expect = 7e-11
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 1859 EGWL-----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIY--------LP 1905
EG++ + K ++ W + + K + D+ K++ + L
Sbjct: 11 EGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQ 70
Query: 1906 GFTVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQAT 1952
+ A + +K+ L++ G F L A E S W+ L +
Sbjct: 71 NAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 60.3 bits (146), Expect = 9e-11
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 713 EGWL-----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD------STKAHLFIYLPGF 761
EG L + K + W + +++ + D + + L
Sbjct: 11 EGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARA 70
Query: 762 TVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQAT 806
+ A + + RK+ K+ G + A + E SSWL ++ A
Sbjct: 71 QGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116
Score = 60.3 bits (146), Expect = 9e-11
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 1859 EGWL-----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKD------STKAHLFIYLPGF 1907
EG L + K + W + +++ + D + + L
Sbjct: 11 EGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARA 70
Query: 1908 TVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQAT 1952
+ A + + RK+ K+ G + A + E SSWL ++ A
Sbjct: 71 QGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 60.4 bits (146), Expect = 9e-11
Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE-VK 770
+GWL + I WF++ + + D + + + + + +
Sbjct: 14 RKGWLTINNIGIMK-GGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFM 72
Query: 771 SRKYALKIYHTG--------TTFYLSADSQDEFSSWLGCLSQATIAHDRS 812
S K+ +++T L+ ++Q+E SW +A + +R
Sbjct: 73 SSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERV 122
Score = 60.4 bits (146), Expect = 9e-11
Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVE-VK 1916
+GWL + I WF++ + + D + + + + + +
Sbjct: 14 RKGWLTINNIGIMK-GGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFM 72
Query: 1917 SRKYALKIYHTG--------TTFYLSADSQDEFSSWLGCLSQATIAHDRS 1958
S K+ +++T L+ ++Q+E SW +A + +R
Sbjct: 73 SSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERV 122
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 59.7 bits (145), Expect = 1e-10
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYLPGFTVAPAVE 768
+G L ++ + W FI++ + Y + + I+L G V
Sbjct: 9 KQGCLLKQGHRRKN---WKVRKFILREDPAYLHY-YDPAGAEDPLGAIHLRGCVVTSVES 64
Query: 769 VKS-----RKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQAT 806
+ + +I ++L A + E + W+ + A+
Sbjct: 65 NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108
Score = 59.7 bits (145), Expect = 1e-10
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYLPGFTVAPAVE 1914
+G L ++ + W FI++ + Y + + I+L G V
Sbjct: 9 KQGCLLKQGHRRKN---WKVRKFILREDPAYLHY-YDPAGAEDPLGAIHLRGCVVTSVES 64
Query: 1915 VKS-----RKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQAT 1952
+ + +I ++L A + E + W+ + A+
Sbjct: 65 NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 60.1 bits (146), Expect = 1e-10
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 5/106 (4%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGN--HFYGFTDKDSTKAHLFIYLPGFTVAPAV 767
G+L + K + W WF Y I L
Sbjct: 8 KKLCGYLSKFGGK-GPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDC-- 64
Query: 768 EVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSP 813
+ + + +I L A ++ WL L SP
Sbjct: 65 KADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNSP 110
Score = 60.1 bits (146), Expect = 1e-10
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 5/106 (4%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGN--HFYGFTDKDSTKAHLFIYLPGFTVAPAV 1913
G+L + K + W WF Y I L
Sbjct: 8 KKLCGYLSKFGGK-GPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDC-- 64
Query: 1914 EVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSP 1959
+ + + +I L A ++ WL L SP
Sbjct: 65 KADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNSP 110
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 59.7 bits (145), Expect = 1e-10
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
L K+ G+ LG + P+ G I D+ K++ GD I + N + G +
Sbjct: 7 DLMKKAGKELGLSLSPNEIGCT-IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 65
Query: 266 VMALFEESSSDIFLTLKKRPCHS 288
ALF+ ++ + + + + S
Sbjct: 66 CYALFKGANGKVSMEVTRPKPGS 88
Score = 59.7 bits (145), Expect = 1e-10
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
L K+ G+ LG + P+ G I D+ K++ GD I + N + G +
Sbjct: 7 DLMKKAGKELGLSLSPNEIGCT-IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 65
Query: 1407 VMALFEESSSDIFLTLKKRPCHS 1429
ALF+ ++ + + + + S
Sbjct: 66 CYALFKGANGKVSMEVTRPKPGS 88
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 59.9 bits (145), Expect = 1e-10
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 769
+ +G+L ++ I V W R +K + S + + L V P E
Sbjct: 10 SEKKGYLLKKSDGIRKV--WQRRKCSVKNGILT-ISHATSNRQPAKLNLLTCQVKPNAE- 65
Query: 770 KSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 805
K + + T++ A+ + ++ +W+ L+ +
Sbjct: 66 --DKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNS 99
Score = 59.9 bits (145), Expect = 1e-10
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 1915
+ +G+L ++ I V W R +K + S + + L V P E
Sbjct: 10 SEKKGYLLKKSDGIRKV--WQRRKCSVKNGILT-ISHATSNRQPAKLNLLTCQVKPNAE- 65
Query: 1916 KSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 1951
K + + T++ A+ + ++ +W+ L+ +
Sbjct: 66 --DKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNS 99
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
a.60.1.2
Length = 81
Score = 58.6 bits (142), Expect = 1e-10
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1148 NNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIIL 1206
+ V DWL + + RY + F + +L + D+ GI +GHQ+ IL
Sbjct: 3 SGSSGLTVGDWLDSIR--MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKIL 60
Query: 1207 EAVDHLR 1213
++ +R
Sbjct: 61 GSIQTMR 67
Score = 58.2 bits (141), Expect = 2e-10
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 9 WKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEA 67
V DWL + + RY + F + +L + D+ GI +GHQ+ IL +
Sbjct: 5 SSGLTVGDWLDSIR--MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGS 62
Query: 68 VDHLR 72
+ +R
Sbjct: 63 IQTMR 67
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 62.2 bits (151), Expect = 1e-10
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
L K+ G+ LG + P+ G I D+ K++ GD I + N + G +
Sbjct: 118 DLMKKAGKELGLSLSPNEIGCT-IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 176
Query: 266 VMALFEESSSDIFLTLKKRP 285
ALF+ ++ + + + +
Sbjct: 177 CYALFKGANGKVSMEVTRPK 196
Score = 62.2 bits (151), Expect = 1e-10
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
L K+ G+ LG + P+ G I D+ K++ GD I + N + G +
Sbjct: 118 DLMKKAGKELGLSLSPNEIGCT-IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 176
Query: 1407 VMALFEESSSDIFLTLKKRP 1426
ALF+ ++ + + + +
Sbjct: 177 CYALFKGANGKVSMEVTRPK 196
Score = 36.8 bits (85), Expect = 0.042
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 209 KRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQIN 254
K + +G + G I + +++ D I IN
Sbjct: 25 KVEKKPMGVIVCGGKNNHVTTGCV-ITHVYPEGQVAADKRLKIFDHICDIN 74
Score = 36.8 bits (85), Expect = 0.042
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 1350 KRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQIN 1395
K + +G + G I + +++ D I IN
Sbjct: 25 KVEKKPMGVIVCGGKNNHVTTGCV-ITHVYPEGQVAADKRLKIFDHICDIN 74
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 59.9 bits (145), Expect = 1e-10
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYLPGFTVA-- 764
+G+L ++ K W F+++ + Y K+ + L G V+
Sbjct: 18 VVKQGYLAKQGHKRKN---WKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSAL 74
Query: 765 ------PAVEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQAT 806
V+ + K+ T +Y+ A S+ E + W+ + + T
Sbjct: 75 EDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT 123
Score = 59.9 bits (145), Expect = 1e-10
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYLPGFTVA-- 1910
+G+L ++ K W F+++ + Y K+ + L G V+
Sbjct: 18 VVKQGYLAKQGHKRKN---WKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSAL 74
Query: 1911 ------PAVEVKSRKYALKIYHTG-TTFYLSADSQDEFSSWLGCLSQAT 1952
V+ + K+ T +Y+ A S+ E + W+ + + T
Sbjct: 75 EDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT 123
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 57.6 bits (139), Expect = 2e-10
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 9 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLL---NLQPDDLEHHGICKVGHQEIIL 65
V WL+ + + +Y + N + + ++ DL GI GH++ IL
Sbjct: 10 CPVQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRIL 67
Query: 66 EAVDHLRN 73
+A+ L +
Sbjct: 68 QAIQLLPS 75
Score = 57.6 bits (139), Expect = 2e-10
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 1150 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLL---NLQPDDLEHHGICKVGHQEIIL 1206
V WL+ + + +Y + N + + ++ DL GI GH++ IL
Sbjct: 10 CPVQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRIL 67
Query: 1207 EAVDHLRN 1214
+A+ L +
Sbjct: 68 QAIQLLPS 75
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 58.9 bits (142), Expect = 3e-10
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 21/119 (17%)
Query: 706 DLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH---LFIYLPGFT 762
G+L +R + + + + +G++++ N + F D K + + L T
Sbjct: 2 HPFTEIKSGFLERRSKFLKS---YSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECT 58
Query: 763 VAPA----------VEVKSRKYALKIYHTGT-----TFYLSADSQDEFSSWLGCLSQAT 806
V K+ L G + ADS + SW L T
Sbjct: 59 VTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117
Score = 58.9 bits (142), Expect = 3e-10
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 21/119 (17%)
Query: 1852 DLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH---LFIYLPGFT 1908
G+L +R + + + + +G++++ N + F D K + + L T
Sbjct: 2 HPFTEIKSGFLERRSKFLKS---YSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECT 58
Query: 1909 VAPA----------VEVKSRKYALKIYHTGT-----TFYLSADSQDEFSSWLGCLSQAT 1952
V K+ L G + ADS + SW L T
Sbjct: 59 VTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 58.4 bits (141), Expect = 3e-10
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGN-HFYGFTDKDSTKAHLFIYLP--GFTVAPAVEV 769
GWL ++ + W + WF + + H + D+ +++P + E
Sbjct: 8 SGWLLRQSTILKR---WKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQEC 64
Query: 770 --------KSRKYALKIYHT-GTTFYLSADSQDEFSSWLGCLSQA 805
KS+ L+I G T L A+S D+ +W L +
Sbjct: 65 RDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109
Score = 58.4 bits (141), Expect = 3e-10
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGN-HFYGFTDKDSTKAHLFIYLP--GFTVAPAVEV 1915
GWL ++ + W + WF + + H + D+ +++P + E
Sbjct: 8 SGWLLRQSTILKR---WKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQEC 64
Query: 1916 --------KSRKYALKIYHT-GTTFYLSADSQDEFSSWLGCLSQA 1951
KS+ L+I G T L A+S D+ +W L +
Sbjct: 65 RDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDS 109
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase,
membrane, nucleotide- binding, phosphorylation, repeat,
signal, transferase; 2.10A {Homo sapiens}
Length = 83
Score = 57.1 bits (138), Expect = 4e-10
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 1138 NPFYKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGI 1196
+P P + V +WL+ + + RY ESF + + + +DL G+
Sbjct: 2 HPLLDQRQP-HYSAFGSVGEWLRAIK--MGRYEESFAAAGFGSFELVSQISAEDLLRIGV 58
Query: 1197 CKVGHQEIILEAVDHLR 1213
GHQ+ IL +V H++
Sbjct: 59 TLAGHQKKILASVQHMK 75
Score = 56.7 bits (137), Expect = 6e-10
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 14 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72
V +WL+ + + RY ESF + + + +DL G+ GHQ+ IL +V H++
Sbjct: 18 VGEWLRAIK--MGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMK 75
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate,
transport, lipoprotein, ER-golgi transport apparatus,
protein transport; HET: PLM; 2.4A {Homo sapiens} PDB:
2zmv_A 2jsn_A
Length = 219
Score = 61.3 bits (148), Expect = 4e-10
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 4/125 (3%)
Query: 1026 RQIMANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHM 1085
R + +G N F NE H+ + + +
Sbjct: 74 RYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMF-HSLFAIGSQLSPEQGSS 132
Query: 1086 YLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKIN 1144
++ + + + + + T TG+KF+++ D + GI +YE++ ++L NPFY +
Sbjct: 133 GIEML-ETDTFKLHCYQTLTGIKFVVLAD-PRQAGIDSLLRKIYEIYSDFALKNPFYSLE 190
Query: 1145 TPINN 1149
PI
Sbjct: 191 MPIRC 195
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 57.4 bits (139), Expect = 4e-10
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
+ K + LG I + G I IK I GD I IN + +VGW
Sbjct: 10 NVYKSE-DSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYD 68
Query: 266 VMALFEESSSDIFLTLK 282
V +E + T+K
Sbjct: 69 VAKKLKELKKEELFTMK 85
Score = 57.4 bits (139), Expect = 4e-10
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
+ K + LG I + G I IK I GD I IN + +VGW
Sbjct: 10 NVYKSE-DSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYD 68
Query: 1407 VMALFEESSSDIFLTLK 1423
V +E + T+K
Sbjct: 69 VAKKLKELKKEELFTMK 85
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 57.3 bits (138), Expect = 7e-10
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 713 EGWL-----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTK------AHLFIYLPGF 761
EG+L ++ K ++ W + +I + D S + + + L
Sbjct: 2 EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEA 61
Query: 762 TVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQA 805
A++ K +K+ K+ G + A +E ++W+ +S A
Sbjct: 62 ICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
Score = 57.3 bits (138), Expect = 7e-10
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 1859 EGWL-----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTK------AHLFIYLPGF 1907
EG+L ++ K ++ W + +I + D S + + + L
Sbjct: 2 EGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEA 61
Query: 1908 TVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQA 1951
A++ K +K+ K+ G + A +E ++W+ +S A
Sbjct: 62 ICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 57.2 bits (138), Expect = 7e-10
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 4 VNVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLL---NLQPDDLEHHGICKVGH 60
+N V WL+ + + +Y + N + + ++ DL GI GH
Sbjct: 15 MNGPRCPVQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGH 72
Query: 61 QEIILEAVDHLR 72
++ IL+A+ L
Sbjct: 73 RQRILQAIQLLP 84
Score = 55.7 bits (134), Expect = 2e-09
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 1149 NWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLL---NLQPDDLEHHGICKVGHQEII 1205
V WL+ + + +Y + N + + ++ DL GI GH++ I
Sbjct: 19 RCPVQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRI 76
Query: 1206 LEAVDHLR 1213
L+A+ L
Sbjct: 77 LQAIQLLP 84
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A
{Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 55.9 bits (135), Expect = 1e-09
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 1145 TPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQE 1203
T + + V +WL+ + + +Y ESF N + + +D+ G+ GHQ+
Sbjct: 4 TRPDYTSFNTVDEWLEAIK--MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQK 61
Query: 1204 IILEAVDHLR 1213
IL ++ +R
Sbjct: 62 KILNSIQVMR 71
Score = 55.2 bits (133), Expect = 2e-09
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 9 WKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEA 67
+ V +WL+ + + +Y ESF N + + +D+ G+ GHQ+ IL +
Sbjct: 9 TSFNTVDEWLEAIK--MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNS 66
Query: 68 VDHLR 72
+ +R
Sbjct: 67 IQVMR 71
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 56.2 bits (136), Expect = 1e-09
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
+K E +G C+ + + I ++ G + GDEI++IN V V Q
Sbjct: 17 QFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQ 76
Query: 266 VMALFEESSSDIFLTL 281
+ +E+ I L +
Sbjct: 77 LQKAMKETKGMISLKV 92
Score = 56.2 bits (136), Expect = 1e-09
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
+K E +G C+ + + I ++ G + GDEI++IN V V Q
Sbjct: 17 QFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQ 76
Query: 1407 VMALFEESSSDIFLTL 1422
+ +E+ I L +
Sbjct: 77 LQKAMKETKGMISLKV 92
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling,
angiogenesis, apopt ATP-binding, cataract; NMR {Homo
sapiens}
Length = 82
Score = 55.2 bits (133), Expect = 2e-09
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 1147 INNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEII 1205
+ V++WL+ + + +Y E F+ + ++ + DD++ G+ GHQ+ I
Sbjct: 11 VPRGSHMTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRI 68
Query: 1206 LEAVDHLR 1213
++ L+
Sbjct: 69 AYSLLGLK 76
Score = 54.4 bits (131), Expect = 3e-09
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEII 64
V V++WL+ + + +Y E F+ + ++ + DD++ G+ GHQ+ I
Sbjct: 11 VPRGSHMTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRI 68
Query: 65 LEAVDHLR 72
++ L+
Sbjct: 69 AYSLLGLK 76
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 55.7 bits (134), Expect = 2e-09
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 14 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72
V DWL+ + + RY ++F + ++++ DDL GI + HQ IL +V +R
Sbjct: 29 VGDWLQAIK--MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMR 86
Query: 73 N 73
Sbjct: 87 T 87
Score = 55.7 bits (134), Expect = 2e-09
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 1155 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213
V DWL+ + + RY ++F + ++++ DDL GI + HQ IL +V +R
Sbjct: 29 VGDWLQAIK--MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMR 86
Query: 1214 N 1214
Sbjct: 87 T 87
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 56.3 bits (136), Expect = 2e-09
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYL-------PGF 761
EG L+++ + W WF++ Y + + T+ I L PG
Sbjct: 10 YEGILYKKGAFMKP---WKARWFVLDKTKHQLRY-YDHRMDTECKGVIDLAEVEAVAPGT 65
Query: 762 TVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRS 812
A + K + T + A W+ + Q+ ++ S
Sbjct: 66 PTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRI-QSCLSSGPS 115
Score = 56.3 bits (136), Expect = 2e-09
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNH---FYGFTDKDSTKAHLFIYL-------PGF 1907
EG L+++ + W WF++ Y + + T+ I L PG
Sbjct: 10 YEGILYKKGAFMKP---WKARWFVLDKTKHQLRY-YDHRMDTECKGVIDLAEVEAVAPGT 65
Query: 1908 TVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRS 1958
A + K + T + A W+ + Q+ ++ S
Sbjct: 66 PTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRI-QSCLSSGPS 115
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 55.9 bits (135), Expect = 2e-09
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ---IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
+ K PG LG + + I IK S +SG + GD I+ I+ ++
Sbjct: 20 EIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCS 79
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
+ + L S + L + P
Sbjct: 80 LLEATKLLASISEKVRLEILPVP 102
Score = 55.9 bits (135), Expect = 2e-09
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ---IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
+ K PG LG + + I IK S +SG + GD I+ I+ ++
Sbjct: 20 EIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCS 79
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
+ + L S + L + P
Sbjct: 80 LLEATKLLASISEKVRLEILPVP 102
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 54.8 bits (132), Expect = 3e-09
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 7 ADWKPDQ-VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEII 64
+ P + V++WL+ + + +Y E F+ + ++ + DD++ G+ GHQ+ I
Sbjct: 7 GEGVPFRTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRI 64
Query: 65 LEAVDHLR 72
++ L+
Sbjct: 65 AYSLLGLK 72
Score = 54.5 bits (131), Expect = 4e-09
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1155 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213
V++WL+ + + +Y E F+ + ++ + DD++ G+ GHQ+ I ++ L+
Sbjct: 15 VSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLK 72
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 56.1 bits (135), Expect = 3e-09
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFT----DKDSTKAHLFIYLPGFTV---AP 765
G+L+ + + +W + +F++ Y F + + + L G+TV P
Sbjct: 11 SGYLWAIGKNV--WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDP 68
Query: 766 AVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAH 809
++ + G T ++D + + W+ + +AT
Sbjct: 69 QPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQS 112
Score = 56.1 bits (135), Expect = 3e-09
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFT----DKDSTKAHLFIYLPGFTV---AP 1911
G+L+ + + +W + +F++ Y F + + + L G+TV P
Sbjct: 11 SGYLWAIGKNV--WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDP 68
Query: 1912 AVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAH 1955
++ + G T ++D + + W+ + +AT
Sbjct: 69 QPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQS 112
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase,
nucleotide-binding, transferase, tyrosine-protein
kinase, signal, sterIle alpha motif; 2.00A {Homo
sapiens} PDB: 3kka_A
Length = 82
Score = 54.4 bits (131), Expect = 3e-09
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 5 NVADWKPDQ-VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQE 62
D P + V++WL+ + + RY+ F + ++ + +L L +DL GI GHQ+
Sbjct: 16 FQGDGIPYRTVSEWLESIR--MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQK 73
Query: 63 IILEAVDHL 71
IL ++
Sbjct: 74 RILCSIQGF 82
Score = 52.5 bits (126), Expect = 2e-08
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1155 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHL 1212
V++WL+ + + RY+ F + ++ + +L L +DL GI GHQ+ IL ++
Sbjct: 26 VSEWLESIR--MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 55.5 bits (134), Expect = 3e-09
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
++K LG + + I I A +SG + GDE+++IN + G DV +
Sbjct: 30 RIEKARDIPLGATVRNEMDSVI-ISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNE 88
Query: 266 VMALFEESSSDIFLTLKKRP 285
V L + + L
Sbjct: 89 VFDLLSDMHGTLTFVLIPSS 108
Score = 55.5 bits (134), Expect = 3e-09
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
++K LG + + I I A +SG + GDE+++IN + G DV +
Sbjct: 30 RIEKARDIPLGATVRNEMDSVI-ISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNE 88
Query: 1407 VMALFEESSSDIFLTLKKRP 1426
V L + + L
Sbjct: 89 VFDLLSDMHGTLTFVLIPSS 108
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 54.5 bits (131), Expect = 4e-09
Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEII 64
++ ++ WL+ + + RY E ++N + + L ++ +DLE G+ H+ ++
Sbjct: 21 MSGLGEAGMSAWLRAIGLE--RYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLL 78
Query: 65 LEAVDHLR 72
L+ + +
Sbjct: 79 LDTLQLSK 86
Score = 54.5 bits (131), Expect = 5e-09
Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEI 1204
++ ++ WL+ + + RY E ++N + + L ++ +DLE G+ H+ +
Sbjct: 20 HMSGLGEAGMSAWLRAIGLE--RYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRL 77
Query: 1205 ILEAVDHLR 1213
+L+ + +
Sbjct: 78 LLDTLQLSK 86
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 54.8 bits (132), Expect = 4e-09
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 1145 TPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQE 1203
+ + V DWL + + +Y +SFL Q + + +DL GI GHQ+
Sbjct: 15 SIPDFTAFTTVDDWLSAIK--MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQK 72
Query: 1204 IILEAVDHLR 1213
IL ++ +R
Sbjct: 73 KILNSIHSMR 82
Score = 54.5 bits (131), Expect = 6e-09
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 5 NVADWKPDQ-VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQE 62
++ D+ V DWL + + +Y +SFL Q + + +DL GI GHQ+
Sbjct: 15 SIPDFTAFTTVDDWLSAIK--MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQK 72
Query: 63 IILEAVDHLR 72
IL ++ +R
Sbjct: 73 KILNSIHSMR 82
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 56.2 bits (135), Expect = 4e-09
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 28/120 (23%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKDSTKAHLFIYLPGFTVAPAVEV 769
G+L + +S W R W ++ GN + D+ I L T
Sbjct: 8 RGFLTIFED-VSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPA 66
Query: 770 K----SRKYALKIYHTG--------------------TTFYLSADSQDEFSSWLGCLSQA 805
+R+ ++ T +LSAD+++E W+ L+Q
Sbjct: 67 NREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQV 126
Score = 56.2 bits (135), Expect = 4e-09
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 28/120 (23%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKDSTKAHLFIYLPGFTVAPAVEV 1915
G+L + +S W R W ++ GN + D+ I L T
Sbjct: 8 RGFLTIFED-VSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPA 66
Query: 1916 K----SRKYALKIYHTG--------------------TTFYLSADSQDEFSSWLGCLSQA 1951
+R+ ++ T +LSAD+++E W+ L+Q
Sbjct: 67 NREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQV 126
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1;
cell-free protein synthesis, protein regulation, lipid
metabolism, structural genomics; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 97
Score = 54.8 bits (131), Expect = 4e-09
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKV--GHQE 62
V W P +VADWL + ++ Y E H GQ L+NL +D + + +V + +
Sbjct: 16 EVVYWSPKKVADWLL--ENAMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSDNGQ 71
Query: 63 IILEAVDHLRNFHYELDHEN 82
+L+ ++ L+ H+ H+N
Sbjct: 72 RLLDMIETLKMEHHMEAHKN 91
Score = 53.6 bits (128), Expect = 1e-08
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 1145 TPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKV--GHQ 1202
+ W P +VADWL + ++ Y E H GQ L+NL +D + + +V +
Sbjct: 15 KEVVYWSPKKVADWLL--ENAMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSDNG 70
Query: 1203 EIILEAVDHLRNFHYELDHEN 1223
+ +L+ ++ L+ H+ H+N
Sbjct: 71 QRLLDMIETLKMEHHMEAHKN 91
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics,
structural genomics consortium, SGC, alternative
splicing, ATP-binding; 2.10A {Homo sapiens}
Length = 90
Score = 54.4 bits (131), Expect = 4e-09
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 5 NVADWKPDQ-VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQE 62
D+ V +WL+ + + RY ++F N + + + +D+ GI VGHQ+
Sbjct: 18 GTPDFTTFCSVGEWLQAIK--MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQK 75
Query: 63 IILEAVDHLRN 73
I+ ++ +R
Sbjct: 76 KIMSSIQTMRA 86
Score = 54.4 bits (131), Expect = 5e-09
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 1143 INTPINNWKPDQ-----VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGI 1196
PD V +WL+ + + RY ++F N + + + +D+ GI
Sbjct: 11 RENLYFQGTPDFTTFCSVGEWLQAIK--MERYKDNFTAAGYNSLESVARMTIEDVMSLGI 68
Query: 1197 CKVGHQEIILEAVDHLRN 1214
VGHQ+ I+ ++ +R
Sbjct: 69 TLVGHQKKIMSSIQTMRA 86
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding,
transferase, tyrosine-protein kinase, signal, sterIle
alpha motif; 2.40A {Homo sapiens}
Length = 86
Score = 54.5 bits (131), Expect = 4e-09
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1144 NTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQ 1202
N V++WL+ + + +Y E F+ + ++ + DD++ G+ GHQ
Sbjct: 13 NLYFQGVPFRTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQ 70
Query: 1203 EIILEAVDHLR 1213
+ I ++ L+
Sbjct: 71 KRIAYSLLGLK 81
Score = 53.3 bits (128), Expect = 1e-08
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 14 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72
V++WL+ + + +Y E F+ + ++ + DD++ G+ GHQ+ I ++ L+
Sbjct: 24 VSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLK 81
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 56.3 bits (135), Expect = 5e-09
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Query: 711 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFT-VAPAVEV 769
EG+L + + W ++G + +TDK S + + T +
Sbjct: 19 YFEGFLLIKRSGYRE---YEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNST 75
Query: 770 KSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQAT 806
+ + L ++ + W G + T
Sbjct: 76 EKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVT 112
Score = 56.3 bits (135), Expect = 5e-09
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 4/97 (4%)
Query: 1857 DCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFT-VAPAVEV 1915
EG+L + + W ++G + +TDK S + + T +
Sbjct: 19 YFEGFLLIKRSGYRE---YEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNST 75
Query: 1916 KSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQAT 1952
+ + L ++ + W G + T
Sbjct: 76 EKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVT 112
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 56.7 bits (136), Expect = 5e-09
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLF--IYLPGFTVAPAV 767
P+ ++ K T+ + + W K + K+ + + L G V P V
Sbjct: 47 PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDV 106
Query: 768 EVKSRKYALKIYHTG----TTFYLSADSQDEFSSWLGCLSQATI 807
+ +K+ +K+ +L D++ +++ W+ A+
Sbjct: 107 NISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLASK 150
Score = 56.7 bits (136), Expect = 5e-09
Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLF--IYLPGFTVAPAV 1913
P+ ++ K T+ + + W K + K+ + + L G V P V
Sbjct: 47 PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDV 106
Query: 1914 EVKSRKYALKIYHTG----TTFYLSADSQDEFSSWLGCLSQATI 1953
+ +K+ +K+ +L D++ +++ W+ A+
Sbjct: 107 NISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLASK 150
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 55.4 bits (133), Expect = 6e-09
Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGN-HFYGFTDKDSTKAHLFIYLP--GFTVAPAVEV 769
GWL+ R+ S + +W R WF + + + D+ + + + + E
Sbjct: 11 GGWLW---RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQEC 67
Query: 770 --------KSRKYALKIYHT-GTTFYLSADSQDEFSSWLGCLSQA 805
+SR L + G+ +L A+++D+ +W L +A
Sbjct: 68 QDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEA 112
Score = 55.4 bits (133), Expect = 6e-09
Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGN-HFYGFTDKDSTKAHLFIYLP--GFTVAPAVEV 1915
GWL+ R+ S + +W R WF + + + D+ + + + + E
Sbjct: 11 GGWLW---RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQEC 67
Query: 1916 --------KSRKYALKIYHT-GTTFYLSADSQDEFSSWLGCLSQA 1951
+SR L + G+ +L A+++D+ +W L +A
Sbjct: 68 QDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEA 112
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 54.8 bits (132), Expect = 8e-09
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 183 LADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAY 239
+ ++ +I + L P+ TL+K +G I + I + N+ A
Sbjct: 1 MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCL-YIVQVFDNTPAA 59
Query: 240 QSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKP 298
G + GDEI +N +++ G +V + +E ++ + K K L ++ P
Sbjct: 60 LDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGP 118
Score = 54.8 bits (132), Expect = 8e-09
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 1324 LADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAY 1380
+ ++ +I + L P+ TL+K +G I + I + N+ A
Sbjct: 1 MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCL-YIVQVFDNTPAA 59
Query: 1381 QSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKP 1439
G + GDEI +N +++ G +V + +E ++ + K K L ++ P
Sbjct: 60 LDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGP 118
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 53.9 bits (130), Expect = 8e-09
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 183 LADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQ--------IGDIKC 234
+A E+I + TL K + G CI+ I I
Sbjct: 1 MAGELIHMV--------------TLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVP 46
Query: 235 NSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 283
+S A+ G+++ GD I+ +N + V + V+ L +E+ I L ++
Sbjct: 47 DSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
Score = 53.9 bits (130), Expect = 8e-09
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 1324 LADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQ--------IGDIKC 1375
+A E+I + TL K + G CI+ I I
Sbjct: 1 MAGELIHMV--------------TLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVP 46
Query: 1376 NSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKK 1424
+S A+ G+++ GD I+ +N + V + V+ L +E+ I L ++
Sbjct: 47 DSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 54.5 bits (131), Expect = 1e-08
Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 15/114 (13%)
Query: 713 EGWLF---QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLF-----------IYL 758
G L W W ++ GN + + T + L
Sbjct: 15 SGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDL 74
Query: 759 PGFTVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQATIAHDR 811
G +A + SR+ L I G F L +D + E +W L R
Sbjct: 75 RGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERLVR 128
Score = 54.5 bits (131), Expect = 1e-08
Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 15/114 (13%)
Query: 1859 EGWLF---QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLF-----------IYL 1904
G L W W ++ GN + + T + L
Sbjct: 15 SGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDL 74
Query: 1905 PGFTVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQATIAHDR 1957
G +A + SR+ L I G F L +D + E +W L R
Sbjct: 75 RGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERLVR 128
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein
3; SAM domain, helix bundle, cell membrane, cell
projection, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 53.8 bits (129), Expect = 1e-08
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 1139 PFYKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGIC 1197
+ + + +A WL + + +Y ++F + + L ++L+ GI
Sbjct: 13 GLVPRGSHMAAPQDLDIAVWLATVHL--EQYADTFRRHGLATAGAARGLGHEELKQLGIS 70
Query: 1198 KVGHQEIILEAVDHLR 1213
GH++ IL +
Sbjct: 71 ATGHRKRILRLLQTGT 86
Score = 53.4 bits (128), Expect = 1e-08
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEI 63
++A + +A WL + + +Y ++F + + L ++L+ GI GH++
Sbjct: 20 HMAAPQDLDIAVWLATVHL--EQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKR 77
Query: 64 ILEAVDHLR 72
IL +
Sbjct: 78 ILRLLQTGT 86
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 54.0 bits (130), Expect = 1e-08
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ---------IGDIKCNSTAYQSGKIECGDEIVQINYQ 256
+ ++ E GF II S + IG I S A + K++ GD I+ +N Q
Sbjct: 15 VIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQ 74
Query: 257 TVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 288
+++ ++ L +++ + L + + +
Sbjct: 75 SIINMPHADIVKLIKDAGLSVTLRIIPQEELN 106
Score = 54.0 bits (130), Expect = 1e-08
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ---------IGDIKCNSTAYQSGKIECGDEIVQINYQ 1397
+ ++ E GF II S + IG I S A + K++ GD I+ +N Q
Sbjct: 15 VIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQ 74
Query: 1398 TVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 1429
+++ ++ L +++ + L + + +
Sbjct: 75 SIINMPHADIVKLIKDAGLSVTLRIIPQEELN 106
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 53.1 bits (128), Expect = 1e-08
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
T+ K H+GF +I I +S+A ++G + I +IN Q V+G Q
Sbjct: 9 TMHKDSTGHVGFIFKNG-----KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQ 62
Query: 266 VMALFEESSSDIFLT 280
+ + S + + +T
Sbjct: 63 IADILSTSGTVVTIT 77
Score = 53.1 bits (128), Expect = 1e-08
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
T+ K H+GF +I I +S+A ++G + I +IN Q V+G Q
Sbjct: 9 TMHKDSTGHVGFIFKNG-----KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQ 62
Query: 1407 VMALFEESSSDIFLT 1421
+ + S + + +T
Sbjct: 63 IADILSTSGTVVTIT 77
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 54.1 bits (130), Expect = 1e-08
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ------IGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
L P G + S I I+ +S A + G ++ GD ++ IN
Sbjct: 20 VLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTE 79
Query: 260 GWDVKQVMALFEESSSDIFLTLKKR 284
++ L +SS +TL+
Sbjct: 80 DSTFEEANQLLRDSSITSKVTLEIE 104
Score = 54.1 bits (130), Expect = 1e-08
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ------IGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
L P G + S I I+ +S A + G ++ GD ++ IN
Sbjct: 20 VLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTE 79
Query: 1401 GWDVKQVMALFEESSSDIFLTLKKR 1425
++ L +SS +TL+
Sbjct: 80 DSTFEEANQLLRDSSITSKVTLEIE 104
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 53.8 bits (129), Expect = 2e-08
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 712 CEGWLFQRDRKISTVPQWIRGWFIIK--GNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 769
G+L D + S +++R +FI+ N + D A + + +V
Sbjct: 17 ICGFLDIEDNENSG--KFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKV 74
Query: 770 --------KSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQAT 806
+ I ++L A+ Q + W+ L+QA+
Sbjct: 75 SIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119
Score = 53.8 bits (129), Expect = 2e-08
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 1858 CEGWLFQRDRKISTVPQWIRGWFIIK--GNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEV 1915
G+L D + S +++R +FI+ N + D A + + +V
Sbjct: 17 ICGFLDIEDNENSG--KFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKV 74
Query: 1916 --------KSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQAT 1952
+ I ++L A+ Q + W+ L+QA+
Sbjct: 75 SIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 52.3 bits (126), Expect = 2e-08
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
+K E +G + + + I ++ G + GDEI +IN +V V+Q
Sbjct: 6 QFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQ 65
Query: 266 VMALFEESSSDIFLTL 281
+ + E I +
Sbjct: 66 LQKMLREMRGSITFKI 81
Score = 52.3 bits (126), Expect = 2e-08
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
+K E +G + + + I ++ G + GDEI +IN +V V+Q
Sbjct: 6 QFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQ 65
Query: 1407 VMALFEESSSDIFLTL 1422
+ + E I +
Sbjct: 66 LQKMLREMRGSITFKI 81
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 53.2 bits (128), Expect = 3e-08
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 193 DPLLLQPSSLDLATLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDE 249
+ L Q TL+K +G I + I + N+ A G + GDE
Sbjct: 16 ENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCL-YIVQVFDNTPAALDGTVAAGDE 74
Query: 250 IVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRL 301
I +N +++ G +V + +E ++ + K + Y++
Sbjct: 75 ITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL------------QYYKV 114
Score = 53.2 bits (128), Expect = 3e-08
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 16/112 (14%)
Query: 1334 DPLLLQPSSLDLATLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDE 1390
+ L Q TL+K +G I + I + N+ A G + GDE
Sbjct: 16 ENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCL-YIVQVFDNTPAALDGTVAAGDE 74
Query: 1391 IVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRL 1442
I +N +++ G +V + +E ++ + K + Y++
Sbjct: 75 ITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKL------------QYYKV 114
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein;
2.40A {Homo sapiens} PDB: 3sen_A
Length = 149
Score = 53.9 bits (129), Expect = 3e-08
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 1126 TSVYELFIKYSLNPFYKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLL 1184
T + I + KP +A WL + + +Y + ++N +
Sbjct: 53 TKPGHRKKIAAEISGLSIPDWLPEHKPANLAVWLSMIG--LAQYYKVLVDNGYENIDFIT 110
Query: 1185 NLQPDDLEHHGICKVGHQEIILEAVDHLR 1213
++ +DL+ GI K+GHQ+ ++ AV L
Sbjct: 111 DITWEDLQEIGITKLGHQKKLMLAVRKLA 139
Score = 52.4 bits (125), Expect = 1e-07
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 1 MAYVNVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVG 59
+ + KP +A WL + + +Y + ++N + ++ +DL+ GI K+G
Sbjct: 69 SIPDWLPEHKPANLAVWLSMIG--LAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLG 126
Query: 60 HQEIILEAVDHLR 72
HQ+ ++ AV L
Sbjct: 127 HQKKLMLAVRKLA 139
Score = 44.7 bits (105), Expect = 4e-05
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 1149 NWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEA 1208
+ V+ WL + Y +F++ + + + P+DL G+ K GH++ I
Sbjct: 7 GKSSEAVSQWLTAFQ--LQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAE 64
Query: 1209 VDHLRNFHYELDH 1221
+ L + +H
Sbjct: 65 ISGLSIPDWLPEH 77
Score = 44.7 bits (105), Expect = 5e-05
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 9 WKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAV 68
+ V+ WL + Y +F++ + + + P+DL G+ K GH++ I +
Sbjct: 8 KSSEAVSQWLTAFQ--LQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEI 65
Query: 69 DHLRNFHYELDH 80
L + +H
Sbjct: 66 SGLSIPDWLPEH 77
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 52.1 bits (125), Expect = 3e-08
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
++K GEHLG + I I Q G + GD I ++N VG D +
Sbjct: 11 GIRKTAGEHLGVTFRVEGGELV-IARILHGGMVAQQGLLHVGDIIKEVN-GQPVGSDPRA 68
Query: 266 VMALFEESSSDIFLTLKKRP 285
+ L +S + L + P
Sbjct: 69 LQELLRNASGSVILKILSGP 88
Score = 52.1 bits (125), Expect = 3e-08
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
++K GEHLG + I I Q G + GD I ++N VG D +
Sbjct: 11 GIRKTAGEHLGVTFRVEGGELV-IARILHGGMVAQQGLLHVGDIIKEVN-GQPVGSDPRA 68
Query: 1407 VMALFEESSSDIFLTLKKRP 1426
+ L +S + L + P
Sbjct: 69 LQELLRNASGSVILKILSGP 88
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 54.0 bits (129), Expect = 4e-08
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 710 PDCEGWLFQRD--RKISTVPQWIRGWFIIKGNHF-YGFTDKDSTKAHLFIYLPGFTVAPA 766
E L +R +K ++ + F++ + Y + FI +
Sbjct: 15 TILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEI 74
Query: 767 VEVKSR------KYALKIYHTGTTFYLSADSQDEFSSWLGCLSQAT 806
V+ KY ++ H T Y+ A S W+ L +
Sbjct: 75 VKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEI 120
Score = 54.0 bits (129), Expect = 4e-08
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 1856 PDCEGWLFQRD--RKISTVPQWIRGWFIIKGNHF-YGFTDKDSTKAHLFIYLPGFTVAPA 1912
E L +R +K ++ + F++ + Y + FI +
Sbjct: 15 TILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEI 74
Query: 1913 VEVKSR------KYALKIYHTGTTFYLSADSQDEFSSWLGCLSQAT 1952
V+ KY ++ H T Y+ A S W+ L +
Sbjct: 75 VKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEI 120
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 53.0 bits (127), Expect = 4e-08
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 712 CEGWLFQRDRKISTVPQWIRGWFIIKGN-HFYGFTDKDSTKAHLFIYLPGFTVAPAVEVK 770
EGWL +R I T W +F++K + F G+ ++ L F+VA +K
Sbjct: 10 KEGWLHKRGEYIKT---WRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 66
Query: 771 S---RKYALKIYH----TGTTFYLSADSQDEFSSWLGCLSQA 805
+ R I T ++ +E W +
Sbjct: 67 TERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 108
Score = 53.0 bits (127), Expect = 4e-08
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGN-HFYGFTDKDSTKAHLFIYLPGFTVAPAVEVK 1916
EGWL +R I T W +F++K + F G+ ++ L F+VA +K
Sbjct: 10 KEGWLHKRGEYIKT---WRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMK 66
Query: 1917 S---RKYALKIYH----TGTTFYLSADSQDEFSSWLGCLSQA 1951
+ R I T ++ +E W +
Sbjct: 67 TERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 108
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 55.7 bits (133), Expect = 5e-08
Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 27/239 (11%)
Query: 702 ISVKDLVMPDCEGWLF---------QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKA 752
+ K+ + GWLF +R ++ +W + W +KG +
Sbjct: 3 LGSKEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNST 62
Query: 753 ------HLFIYLPGFTVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQA 805
++ V E +++ + + G + A SQ + +W+ + A
Sbjct: 63 EQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSA 122
Query: 806 TIAHDRSPVENITFSESEGEEKSSDKSDSDKSKDHCFSSPKVKKMSNFLTGPLTSSSSKH 865
+ + + KS + K+KKM+ ++ K+
Sbjct: 123 CASLFAKK-------HGKEDTVRLLKSQTRSLLQKIDMDSKMKKMAELQLSVVS--DPKN 173
Query: 866 EKKFSSLKKKKEDNHHKSDHGNSSLDRKYLRFLSGTNNVPVPTEHFRSYRRVAPGTLSD 924
K + ++ E N K + R YL L G +P P + R + L
Sbjct: 174 RKAIENQIRQWEQNLEKFHMDLFRM-RCYLASLQG-GELPNPKSLLAATSRPSKLALGR 230
Score = 55.7 bits (133), Expect = 5e-08
Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 27/239 (11%)
Query: 1848 ISVKDLVMPDCEGWLF---------QRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKA 1898
+ K+ + GWLF +R ++ +W + W +KG +
Sbjct: 3 LGSKEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNST 62
Query: 1899 ------HLFIYLPGFTVAPAVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQA 1951
++ V E +++ + + G + A SQ + +W+ + A
Sbjct: 63 EQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSA 122
Query: 1952 TIAHDRSPVENITFSESEGEEKSSDKSDSDKSKDHCFSSPKVKKMSNFLTGPLTSSSSKH 2011
+ + + KS + K+KKM+ ++ K+
Sbjct: 123 CASLFAKK-------HGKEDTVRLLKSQTRSLLQKIDMDSKMKKMAELQLSVVS--DPKN 173
Query: 2012 EKKFSSLKKKKEDNHHKSDHGNSSLDRKYLRFLSGTNNVPVPTEHFRSYRRVAPGTLSD 2070
K + ++ E N K + R YL L G +P P + R + L
Sbjct: 174 RKAIENQIRQWEQNLEKFHMDLFRM-RCYLASLQG-GELPNPKSLLAATSRPSKLALGR 230
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 54.4 bits (131), Expect = 5e-08
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
L K+ LG I I DIK S A+++G +E GD+++ I+ +
Sbjct: 112 KLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC 171
Query: 262 DVKQVMALFEESSSDIFLTLKKRP 285
++ + + ++ + L ++K
Sbjct: 172 SMEDAVQILQQCEDLVKLKIRKDE 195
Score = 54.4 bits (131), Expect = 5e-08
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
L K+ LG I I DIK S A+++G +E GD+++ I+ +
Sbjct: 112 KLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSC 171
Query: 1403 DVKQVMALFEESSSDIFLTLKKRP 1426
++ + + ++ + L ++K
Sbjct: 172 SMEDAVQILQQCEDLVKLKIRKDE 195
Score = 53.2 bits (128), Expect = 1e-07
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ------IGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
L P G + S I I+ +S A + G ++ GD ++ IN
Sbjct: 11 VLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTE 70
Query: 260 GWDVKQVMALFEESSSDIFLTLKKRP 285
++ L +SS +TL+
Sbjct: 71 DSTFEEANQLLRDSSITSKVTLEIEF 96
Score = 53.2 bits (128), Expect = 1e-07
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ------IGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
L P G + S I I+ +S A + G ++ GD ++ IN
Sbjct: 11 VLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTE 70
Query: 1401 GWDVKQVMALFEESSSDIFLTLKKRP 1426
++ L +SS +TL+
Sbjct: 71 DSTFEEANQLLRDSSITSKVTLEIEF 96
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 51.5 bits (124), Expect = 6e-08
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 208 KKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
K+ GE LG ++ G+ I D+ A Q G++ D ++ IN + +
Sbjct: 11 KRDSGEQLGIKLVRRTDEPGVF-ILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPEL 69
Query: 266 VMALFEESSSDIFLTLKKRP 285
+ + S + LT+ +
Sbjct: 70 AAQIIQASGERVNLTIARPG 89
Score = 51.5 bits (124), Expect = 6e-08
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 1349 KKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
K+ GE LG ++ G+ I D+ A Q G++ D ++ IN + +
Sbjct: 11 KRDSGEQLGIKLVRRTDEPGVF-ILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPEL 69
Query: 1407 VMALFEESSSDIFLTLKKRP 1426
+ + S + LT+ +
Sbjct: 70 AAQIIQASGERVNLTIARPG 89
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 51.5 bits (124), Expect = 6e-08
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 206 TLKKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDV 263
L+K+PG+ LG I+ + G+ + DI A G++ GD+I+ +N + V
Sbjct: 9 GLQKKPGKGLGLSIVGKRNDTGVF-VSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ 67
Query: 264 KQVMALFEESSSDIFLTLKKR 284
+ V AL + S + L + +
Sbjct: 68 EAVAALLKCSLGTVTLEVGRI 88
Score = 51.5 bits (124), Expect = 6e-08
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 1347 TLKKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDV 1404
L+K+PG+ LG I+ + G+ + DI A G++ GD+I+ +N + V
Sbjct: 9 GLQKKPGKGLGLSIVGKRNDTGVF-VSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ 67
Query: 1405 KQVMALFEESSSDIFLTLKKR 1425
+ V AL + S + L + +
Sbjct: 68 EAVAALLKCSLGTVTLEVGRI 88
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 52.4 bits (126), Expect = 7e-08
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ-------IGDIKCNSTAYQSGKIECGDEIVQINYQTV 258
L ++ G+ LG I+ H + + S AY +G I+ D+IV ++ +
Sbjct: 20 ELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNI 79
Query: 259 VGWDVKQVMALFEESSSDIFLTLKKRPCHS 288
G+ V+ + + + LTL +R S
Sbjct: 80 QGFANHDVVEVLRNAGQVVHLTLVRRKTSS 109
Score = 52.4 bits (126), Expect = 7e-08
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ-------IGDIKCNSTAYQSGKIECGDEIVQINYQTV 1399
L ++ G+ LG I+ H + + S AY +G I+ D+IV ++ +
Sbjct: 20 ELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNI 79
Query: 1400 VGWDVKQVMALFEESSSDIFLTLKKRPCHS 1429
G+ V+ + + + LTL +R S
Sbjct: 80 QGFANHDVVEVLRNAGQVVHLTLVRRKTSS 109
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction,
SAM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 50.3 bits (120), Expect = 1e-07
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 1146 PINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEI 1204
+ + D+L +++ +Y+ F + + + L+ GI GH+
Sbjct: 9 SSVSEVNVDIKDFLMSINL--EQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRR 66
Query: 1205 ILEAVDHLRN 1214
IL+ + + +
Sbjct: 67 ILKQLQIILS 76
Score = 49.6 bits (118), Expect = 3e-07
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 14 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72
+ D+L +++ +Y+ F + + + L+ GI GH+ IL+ + +
Sbjct: 18 IKDFLMSINL--EQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIIL 75
Query: 73 N 73
+
Sbjct: 76 S 76
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 50.7 bits (121), Expect = 2e-07
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 710 PDCEGWLFQRDRKISTVPQWIRGWFIIKGN----HFYGFTDKDSTKAHLFIYLPGFTVAP 765
+ G+L + ++ W +F++ ++ + K + L G ++P
Sbjct: 8 ENVYGYLMKYTNLVTG---WQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISP 64
Query: 766 AVEVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSES 822
+ + + L A E W+ L T H + +N + S
Sbjct: 65 ---SDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNSGPSS 119
Score = 50.7 bits (121), Expect = 2e-07
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGN----HFYGFTDKDSTKAHLFIYLPGFTVAP 1911
+ G+L + ++ W +F++ ++ + K + L G ++P
Sbjct: 8 ENVYGYLMKYTNLVTG---WQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISP 64
Query: 1912 AVEVKSRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSES 1968
+ + + L A E W+ L T H + +N + S
Sbjct: 65 ---SDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNSGPSS 119
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 49.6 bits (118), Expect = 3e-07
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 4 VNVADWKPDQVADWLKGLDVSIHRYVESFLNNH---VNGQHLLNLQPDDLEHHGICKVGH 60
++ V +WL+ + + +Y L N V+ ++ DL GI H
Sbjct: 22 ISGLRTLEQSVGEWLESIG--LQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQH 79
Query: 61 QEIILEAVDHLR 72
+ +L+A L
Sbjct: 80 RRKLLQAARSLP 91
Score = 48.4 bits (115), Expect = 8e-07
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 1149 NWKPDQVADWLKGLDVSIHRYVESFLNNH---VNGQHLLNLQPDDLEHHGICKVGHQEII 1205
V +WL+ + + +Y L N V+ ++ DL GI H+ +
Sbjct: 26 RTLEQSVGEWLESIG--LQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKL 83
Query: 1206 LEAVDHLR 1213
L+A L
Sbjct: 84 LQAARSLP 91
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 52.0 bits (125), Expect = 3e-07
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 209 KRPGEHLGFCIIPSFHGIHQ------IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
+ G GF I H I ++ A + G I+ GD ++ ++ ++G
Sbjct: 113 HKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
+ M++ ++ + L ++
Sbjct: 173 HAEAMSILKQCGQEATLLIEYDV 195
Score = 52.0 bits (125), Expect = 3e-07
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 1350 KRPGEHLGFCIIPSFHGIHQ------IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
+ G GF I H I ++ A + G I+ GD ++ ++ ++G
Sbjct: 113 HKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
+ M++ ++ + L ++
Sbjct: 173 HAEAMSILKQCGQEATLLIEYDV 195
Score = 51.7 bits (124), Expect = 4e-07
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
L K+ G LG + GI + + +++ A +S +++ GD I +N +
Sbjct: 12 ELMKKEGTTLGLTVS---GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAK 68
Query: 261 WDVKQVMALFEESSSDIFLTLKKRPCHS 288
+ ++++L + + L ++
Sbjct: 69 FRHDEIISLLKNVGERVVLEVEYELPPV 96
Score = 51.7 bits (124), Expect = 4e-07
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
L K+ G LG + GI + + +++ A +S +++ GD I +N +
Sbjct: 12 ELMKKEGTTLGLTVS---GGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAK 68
Query: 1402 WDVKQVMALFEESSSDIFLTLKKRPCHS 1429
+ ++++L + + L ++
Sbjct: 69 FRHDEIISLLKNVGERVVLEVEYELPPV 96
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein
particle complex subunit 3; trapp, palmitate, transport,
lipoprotein, ER-golgi transport apparatus, protein
transport; HET: PLM; 2.4A {Mus musculus}
Length = 145
Score = 50.6 bits (121), Expect = 3e-07
Identities = 18/141 (12%), Positives = 53/141 (37%), Gaps = 14/141 (9%)
Query: 1033 YYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIA------HASLDLLDEQVWQTDHMY 1086
+ + R L+ + K+ + Y+ + + + + + +
Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLS 63
Query: 1087 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYE-LFIKYSL-NPFYKIN 1144
+T ++ + + TPTG+K +M D I+ +Y L++++ + NP +
Sbjct: 64 FQT-SRYK---LHYYETPTGIKVVMNTD-LGVGPIRDVLHHIYSALYVEFVVKNPLCPLG 118
Query: 1145 TPINNWKPD-QVADWLKGLDV 1164
+ + ++ +++ L
Sbjct: 119 QTVQSELFRSRLDSYVRSLPF 139
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 50.1 bits (119), Expect = 4e-07
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 29/117 (24%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSR 772
WL R T+ W + W ++K + + + + + L + K
Sbjct: 11 ADWLKIR----GTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKK-D 65
Query: 773 KYALKIYHTG------------------------TTFYLSADSQDEFSSWLGCLSQA 805
+ K++H + + A S+ + W+ L A
Sbjct: 66 GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELA 122
Score = 50.1 bits (119), Expect = 4e-07
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 29/117 (24%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSR 1918
WL R T+ W + W ++K + + + + + L + K
Sbjct: 11 ADWLKIR----GTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKK-D 65
Query: 1919 KYALKIYHTG------------------------TTFYLSADSQDEFSSWLGCLSQA 1951
+ K++H + + A S+ + W+ L A
Sbjct: 66 GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELA 122
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 48.9 bits (117), Expect = 4e-07
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHL--FIYLPGFTVAPAVEVK 770
G L + I W W ++K N + +D T+ I L + P
Sbjct: 4 CGVLSKWTNYIHG---WQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPH---D 57
Query: 771 SRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 805
+ I + +YL A D W+ + Q
Sbjct: 58 FDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQH 92
Score = 48.9 bits (117), Expect = 4e-07
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHL--FIYLPGFTVAPAVEVK 1916
G L + I W W ++K N + +D T+ I L + P
Sbjct: 4 CGVLSKWTNYIHG---WQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPH---D 57
Query: 1917 SRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 1951
+ I + +YL A D W+ + Q
Sbjct: 58 FDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQH 92
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 49.4 bits (118), Expect = 4e-07
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 206 TLKKRPGEHLGFCIIPSF-HGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
L KR LGF + I D+ A QSG I+ GD I+ +N + +V
Sbjct: 6 RLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYD 65
Query: 265 QVMALFEESSSDIFLTLKKRPCHS 288
+ + +S+ + L R
Sbjct: 66 SALEVLRGIASETHVVLILRGPEG 89
Score = 49.4 bits (118), Expect = 4e-07
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 1347 TLKKRPGEHLGFCIIPSF-HGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
L KR LGF + I D+ A QSG I+ GD I+ +N + +V
Sbjct: 6 RLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYD 65
Query: 1406 QVMALFEESSSDIFLTLKKRPCHS 1429
+ + +S+ + L R
Sbjct: 66 SALEVLRGIASETHVVLILRGPEG 89
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B;
SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 49.8 bits (118), Expect = 8e-07
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 1141 YKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLN---LQPDDLEHHGIC 1197
+ + + V WL+ + + +Y + N + + ++ DL GI
Sbjct: 3 HHHHHLVPRGSVQTVGQWLESIG--LPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGIL 60
Query: 1198 KVGHQEIILEAVDHLRNFHY 1217
GH++ IL+A+ L
Sbjct: 61 NSGHRQRILQAIQLLPKMRP 80
Score = 47.9 bits (113), Expect = 4e-06
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLN---LQPDDLEHHGICKVGHQE 62
V V WL+ + + +Y + N + + ++ DL GI GH++
Sbjct: 9 VPRGSVQTVGQWLESIG--LPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQ 66
Query: 63 IILEAVDHLRNFHY 76
IL+A+ L
Sbjct: 67 RILQAIQLLPKMRP 80
Score = 39.8 bits (92), Expect = 0.003
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 1138 NPFYKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLN--LQPDDLEHHG 1195
+ P VA+WL ++ + Y ++FL N LL + + +
Sbjct: 74 LLPKMRPIGHDGAHPTSVAEWLDSIE--LGDYTKAFLINGYTSMDLLKKIAEVELINVLK 131
Query: 1196 ICKVGHQEIILEAV 1209
I +GH++ IL ++
Sbjct: 132 INLIGHRKRILASL 145
Score = 39.0 bits (90), Expect = 0.004
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 1 MAYVNVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLN--LQPDDLEHHGICKV 58
M + P VA+WL ++ + Y ++FL N LL + + + I +
Sbjct: 78 MRPIGHDGAHPTSVAEWLDSIE--LGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLI 135
Query: 59 GHQEIILEAV 68
GH++ IL ++
Sbjct: 136 GHRKRILASL 145
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 48.5 bits (116), Expect = 9e-07
Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 194 PLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECGD 248
PL ++ T+ + +G I+ + + + A G++ GD
Sbjct: 2 PLGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGD 61
Query: 249 EIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSK 289
+++ ++ +++VG ++ L +SS + L + K+ +
Sbjct: 62 QLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRR 102
Score = 48.5 bits (116), Expect = 9e-07
Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 1335 PLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECGD 1389
PL ++ T+ + +G I+ + + + A G++ GD
Sbjct: 2 PLGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGD 61
Query: 1390 EIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSK 1430
+++ ++ +++VG ++ L +SS + L + K+ +
Sbjct: 62 QLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRR 102
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 48.9 bits (117), Expect = 9e-07
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 193 DPLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECG 247
+ L Q L +KK P + LG I I + A Q+ K+ G
Sbjct: 16 ENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVG 75
Query: 248 DEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 288
D IV I + G Q + L + +S I + + S
Sbjct: 76 DRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116
Score = 48.9 bits (117), Expect = 9e-07
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 1334 DPLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECG 1388
+ L Q L +KK P + LG I I + A Q+ K+ G
Sbjct: 16 ENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVG 75
Query: 1389 DEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 1429
D IV I + G Q + L + +S I + + S
Sbjct: 76 DRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 48.3 bits (115), Expect = 1e-06
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNH-FYGFTDKD-STKAHLFIYLPGFTVAPAVEVK 770
EG L++ ++ W WF++ Y + D + I + +
Sbjct: 2 EGVLYKWTNYLTG---WQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVH---S 55
Query: 771 SRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQA 805
+ +++ G FY+ A + E WL L +
Sbjct: 56 ADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSS 91
Score = 48.3 bits (115), Expect = 1e-06
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNH-FYGFTDKD-STKAHLFIYLPGFTVAPAVEVK 1916
EG L++ ++ W WF++ Y + D + I + +
Sbjct: 2 EGVLYKWTNYLTG---WQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVH---S 55
Query: 1917 SRKYALKIYHTGT-TFYLSADSQDEFSSWLGCLSQA 1951
+ +++ G FY+ A + E WL L +
Sbjct: 56 ADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSS 91
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 48.7 bits (116), Expect = 1e-06
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 713 EGWL-----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS------------TKAHLF 755
G L + +++ W W +++G F D + +
Sbjct: 11 AGVLHRTKTADKGKRLR-KKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYT 69
Query: 756 IYLPGFTVAPAV-EVKSRKYALKIY-HTGTTFYLSADSQDEFSSWLGCLSQA 805
+ L G T++ A + SRK L++ G+ + + DS+ S+W ++Q
Sbjct: 70 VELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121
Score = 48.7 bits (116), Expect = 1e-06
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 20/112 (17%)
Query: 1859 EGWL-----FQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDS------------TKAHLF 1901
G L + +++ W W +++G F D + +
Sbjct: 11 AGVLHRTKTADKGKRLR-KKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYT 69
Query: 1902 IYLPGFTVAPAV-EVKSRKYALKIY-HTGTTFYLSADSQDEFSSWLGCLSQA 1951
+ L G T++ A + SRK L++ G+ + + DS+ S+W ++Q
Sbjct: 70 VELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 48.2 bits (115), Expect = 1e-06
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 206 TLKKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
TL LG I+ GI+ IG I G+IE GD ++Q+N
Sbjct: 10 TLNMEKYNFLGISIVGQSNERGDGGIY-IGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 261 WDVKQVMALF---EESSSDIFLTLKKRP 285
+ + I LT+ K
Sbjct: 69 MSNDDAVRVLRDIVHKPGPIVLTVAKSG 96
Score = 48.2 bits (115), Expect = 1e-06
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 1347 TLKKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
TL LG I+ GI+ IG I G+IE GD ++Q+N
Sbjct: 10 TLNMEKYNFLGISIVGQSNERGDGGIY-IGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 1402 WDVKQVMALF---EESSSDIFLTLKKRP 1426
+ + I LT+ K
Sbjct: 69 MSNDDAVRVLRDIVHKPGPIVLTVAKSG 96
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 47.7 bits (114), Expect = 1e-06
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L K E LG I I I +I A + G + GD I+ +N +
Sbjct: 14 LLLKEDHEGLGISITGGKEHGVPIL-ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
K+ + + + +I +
Sbjct: 73 HKEAVTILSQQRGEIEFEVVYVA 95
Score = 47.7 bits (114), Expect = 1e-06
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L K E LG I I I +I A + G + GD I+ +N +
Sbjct: 14 LLLKEDHEGLGISITGGKEHGVPIL-ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
K+ + + + +I +
Sbjct: 73 HKEAVTILSQQRGEIEFEVVYVA 95
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 48.2 bits (115), Expect = 1e-06
Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 206 TLKKRPGEHLGFCII------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 253
+ + P LG I+ GI I + +S A ++ ++ GD+I+++
Sbjct: 20 EIFREPNVSLGISIVGGQTVIKRLKNGEELKGIF-IKQVLEDSPAGKTNALKTGDKILEV 78
Query: 254 NYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ + + + + + + + ++
Sbjct: 79 SGVDLQNASHSEAVEAIKNAGNPVVFIVQSLS 110
Score = 48.2 bits (115), Expect = 1e-06
Identities = 12/92 (13%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 1347 TLKKRPGEHLGFCII------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 1394
+ + P LG I+ GI I + +S A ++ ++ GD+I+++
Sbjct: 20 EIFREPNVSLGISIVGGQTVIKRLKNGEELKGIF-IKQVLEDSPAGKTNALKTGDKILEV 78
Query: 1395 NYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ + + + + + + + ++
Sbjct: 79 SGVDLQNASHSEAVEAIKNAGNPVVFIVQSLS 110
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical
protein, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 78
Score = 46.7 bits (111), Expect = 2e-06
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 10 KPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAV 68
+ ++L+ + + Y + L N L +++ L I + +L A
Sbjct: 11 NHQTIQEFLERIH--LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAA 68
Query: 69 DHLRN 73
+ L +
Sbjct: 69 ESLLS 73
Score = 46.7 bits (111), Expect = 2e-06
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 1151 KPDQVADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAV 1209
+ ++L+ + + Y + L N L +++ L I + +L A
Sbjct: 11 NHQTIQEFLERIH--LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAA 68
Query: 1210 DHLRN 1214
+ L +
Sbjct: 69 ESLLS 73
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 48.9 bits (116), Expect = 2e-06
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 1144 NTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDD----LEHHGICKV 1199
++ + NW D+V WL V + +Y E+F ++G + L + +
Sbjct: 75 SSEVYNWTVDEVVQWLIT-YVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDR 133
Query: 1200 GH-QEIILEAVD 1210
H Q++ L+A+D
Sbjct: 134 SHRQKLQLKALD 145
Score = 46.2 bits (109), Expect = 1e-05
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDD----LEHHGICKVGH- 60
V +W D+V WL V + +Y E+F ++G + L + + H
Sbjct: 78 VYNWTVDEVVQWLIT-YVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHR 136
Query: 61 QEIILEAVD 69
Q++ L+A+D
Sbjct: 137 QKLQLKALD 145
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 51.5 bits (122), Expect = 2e-06
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 1137 LNPFYKINTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH-G 1195
L + P W V WL+ YV + N +G + L +++ G
Sbjct: 26 LEEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIG 85
Query: 1196 ICKVGHQEIILEAVDHLRNFH 1216
I H+ + A+ + +
Sbjct: 86 ISNPLHRLKLRLAIQEMVSLT 106
Score = 48.4 bits (114), Expect = 2e-05
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH-GICKVGHQEII 64
A W V WL+ YV + N +G + L +++ GI H+ +
Sbjct: 36 FAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKL 95
Query: 65 LEAVDHLRNFH 75
A+ + +
Sbjct: 96 RLAIQEMVSLT 106
Score = 46.8 bits (110), Expect = 5e-05
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 16 DWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH-GICKVGHQEIILEAVDHLRNF 74
+WL L + +Y F+ V+ + L +L DL H + H+ + + L+
Sbjct: 168 EWLPSLGLP--QYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRL 225
Query: 75 HYE 77
+Y+
Sbjct: 226 NYD 228
Score = 46.8 bits (110), Expect = 5e-05
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 1157 DWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHH-GICKVGHQEIILEAVDHLRNF 1215
+WL L + +Y F+ V+ + L +L DL H + H+ + + L+
Sbjct: 168 EWLPSLGLP--QYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRL 225
Query: 1216 HYE 1218
+Y+
Sbjct: 226 NYD 228
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 48.3 bits (115), Expect = 2e-06
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 206 TLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
L KR LGF + I D+ A QSG I+ GD I+ +N + +V
Sbjct: 13 RLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYD 72
Query: 265 QVMALFEESSSDIFLTLKKRP 285
+ + +S+ + L R
Sbjct: 73 SALEVLRGIASETHVVLILRG 93
Score = 48.3 bits (115), Expect = 2e-06
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 1347 TLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
L KR LGF + I D+ A QSG I+ GD I+ +N + +V
Sbjct: 13 RLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYD 72
Query: 1406 QVMALFEESSSDIFLTLKKRP 1426
+ + +S+ + L R
Sbjct: 73 SALEVLRGIASETHVVLILRG 93
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 46.6 bits (111), Expect = 2e-06
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 198 QPSSLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 257
+P+ + L +K E G + I + +I +S A + G I+ GD +++IN
Sbjct: 2 KPTKVTL--VKSAKNEEYGLRL---ASHIF-VKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ L E S + + +++
Sbjct: 56 TENMSLTDAKTLIERSKGKLKMVVQRDE 83
Score = 46.6 bits (111), Expect = 2e-06
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 1339 QPSSLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
+P+ + L +K E G + I + +I +S A + G I+ GD +++IN
Sbjct: 2 KPTKVTL--VKSAKNEEYGLRL---ASHIF-VKEISQDSLAARDGNIQEGDVVLKINGTV 55
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ L E S + + +++
Sbjct: 56 TENMSLTDAKTLIERSKGKLKMVVQRDE 83
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 47.4 bits (113), Expect = 3e-06
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 193 DPLLLQPSSLDLATLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIEC 246
+ L Q + ++K PGE LG + I+ + ++ + G+I+
Sbjct: 16 ENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIY-VISVEPGGVISRDGRIKT 74
Query: 247 GDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
GD ++ ++ + + +AL + +SS I L +
Sbjct: 75 GDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVK 113
Score = 47.4 bits (113), Expect = 3e-06
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 1334 DPLLLQPSSLDLATLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIEC 1387
+ L Q + ++K PGE LG + I+ + ++ + G+I+
Sbjct: 16 ENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIY-VISVEPGGVISRDGRIKT 74
Query: 1388 GDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
GD ++ ++ + + +AL + +SS I L +
Sbjct: 75 GDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVK 113
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 47.0 bits (112), Expect = 3e-06
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 206 TLKKRPGEHLGFCII------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 253
++K PGE LG I P+ GI I + A + G++ G ++++
Sbjct: 14 CIQKAPGERLGISIRGGARGHAGNPRDPTDEGIF-ISKVSPTGAAGRDGRLRVGLRLLEV 72
Query: 254 NYQTVVGWDVKQVMALFEESSSDIFLTLKKR 284
N Q+++G + + L + + +
Sbjct: 73 NQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103
Score = 47.0 bits (112), Expect = 3e-06
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 1347 TLKKRPGEHLGFCII------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 1394
++K PGE LG I P+ GI I + A + G++ G ++++
Sbjct: 14 CIQKAPGERLGISIRGGARGHAGNPRDPTDEGIF-ISKVSPTGAAGRDGRLRVGLRLLEV 72
Query: 1395 NYQTVVGWDVKQVMALFEESSSDIFLTLKKR 1425
N Q+++G + + L + + +
Sbjct: 73 NQQSLLGLTHGEAVQLLRSVGDTLTVLVCDG 103
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 46.5 bits (111), Expect = 3e-06
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L K LGF I+ I+ I + A + G ++ GD+++ +N +V G
Sbjct: 10 ELPKTDEG-LGFNIMGGKEQNSPIY-ISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
++ + L + + + L ++ P
Sbjct: 68 HEKAVELLKAAQGSVKLVVRSGP 90
Score = 46.5 bits (111), Expect = 3e-06
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L K LGF I+ I+ I + A + G ++ GD+++ +N +V G
Sbjct: 10 ELPKTDEG-LGFNIMGGKEQNSPIY-ISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
++ + L + + + L ++ P
Sbjct: 68 HEKAVELLKAAQGSVKLVVRSGP 90
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 46.7 bits (111), Expect = 4e-06
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L K E LG I I I +I A + G + GD I+ +N +
Sbjct: 32 LLLKEDHEGLGISITGGKEHGVPIL-ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90
Query: 263 VKQVMALFEESSSDIFLTLK 282
K+ + + + +I +
Sbjct: 91 HKEAVTILSQQRGEIEFEVV 110
Score = 46.7 bits (111), Expect = 4e-06
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L K E LG I I I +I A + G + GD I+ +N +
Sbjct: 32 LLLKEDHEGLGISITGGKEHGVPIL-ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90
Query: 1404 VKQVMALFEESSSDIFLTLK 1423
K+ + + + +I +
Sbjct: 91 HKEAVTILSQQRGEIEFEVV 110
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 45.9 bits (109), Expect = 4e-06
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
GF I GI + ++ S A S ++ DEI+ IN D K+
Sbjct: 10 NQTPGKSLDFGFTIKWDIPGIF-VASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKE 67
Query: 266 VMALFEESSSDIFLTLKKR 284
++ L + R
Sbjct: 68 WEEAMAKAQETGHLVMDVR 86
Score = 45.9 bits (109), Expect = 4e-06
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
GF I GI + ++ S A S ++ DEI+ IN D K+
Sbjct: 10 NQTPGKSLDFGFTIKWDIPGIF-VASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKE 67
Query: 1407 VMALFEESSSDIFLTLKKR 1425
++ L + R
Sbjct: 68 WEEAMAKAQETGHLVMDVR 86
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 46.6 bits (111), Expect = 4e-06
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 206 TLKKRPGEHLGFCII------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 253
L + P + LG I+ GI I + +S A ++G ++ GD IV++
Sbjct: 9 ELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIF-IKHVLEDSPAGKNGTLKPGDRIVEV 67
Query: 254 NYQTVVGWDVKQVMALFEESSSDIFLTLKKR 284
+ + +Q + ++ + + ++
Sbjct: 68 DGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98
Score = 46.6 bits (111), Expect = 4e-06
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 1347 TLKKRPGEHLGFCII------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 1394
L + P + LG I+ GI I + +S A ++G ++ GD IV++
Sbjct: 9 ELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIF-IKHVLEDSPAGKNGTLKPGDRIVEV 67
Query: 1395 NYQTVVGWDVKQVMALFEESSSDIFLTLKKR 1425
+ + +Q + ++ + + ++
Sbjct: 68 DGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 46.6 bits (110), Expect = 4e-06
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 197 LQPSSLDLATLKKRPGEH--LGFCIIPSF-HGIHQ--IGDIKCNSTAYQSGKIECGDEIV 251
+ P ++K GF + GI + + +K A + G ++ GDEI+
Sbjct: 11 ICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEIL 69
Query: 252 QINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+IN + + + + S + L ++ P
Sbjct: 70 EINNRAADALNSSMLKDFLSQPS--LGLLVRTYP 101
Score = 46.6 bits (110), Expect = 4e-06
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 1338 LQPSSLDLATLKKRPGEH--LGFCIIPSF-HGIHQ--IGDIKCNSTAYQSGKIECGDEIV 1392
+ P ++K GF + GI + + +K A + G ++ GDEI+
Sbjct: 11 ICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEIL 69
Query: 1393 QINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+IN + + + + S + L ++ P
Sbjct: 70 EINNRAADALNSSMLKDFLSQPS--LGLLVRTYP 101
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 45.3 bits (108), Expect = 5e-06
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 207 LKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQV 266
+K R E G + I + +I +S A + G I+ GD +++IN +
Sbjct: 7 VKSRKNEEYGLRL---ASHIF-VKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDA 62
Query: 267 MALFEESSSDIFLTLKK 283
L E S + + +++
Sbjct: 63 KTLIERSKGKLKMVVQR 79
Score = 45.3 bits (108), Expect = 5e-06
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 1348 LKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQV 1407
+K R E G + I + +I +S A + G I+ GD +++IN +
Sbjct: 7 VKSRKNEEYGLRL---ASHIF-VKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDA 62
Query: 1408 MALFEESSSDIFLTLKK 1424
L E S + + +++
Sbjct: 63 KTLIERSKGKLKMVVQR 79
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM
domain, pointed domain, SCM domain, STE50 regulator,
transferase; NMR {Saccharomyces cerevisiae} SCOP:
a.60.1.2 PDB: 1x9x_A
Length = 85
Score = 45.3 bits (107), Expect = 6e-06
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 8 DWKPDQVADWLKGLDVSIHRYVESFL-NNHVNGQHLLNLQPDDLEHHGICKVGHQEIILE 66
V +L+ ++ +Y++SF+ N V + + L D L G+ K+G + IL
Sbjct: 12 TNDLPFVQLFLE--EIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILR 69
Query: 67 AVDHLRNFHY 76
+
Sbjct: 70 KSKSFQRDKR 79
Score = 45.3 bits (107), Expect = 7e-06
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 1149 NWKPDQVADWLKGLDVSIHRYVESFL-NNHVNGQHLLNLQPDDLEHHGICKVGHQEIILE 1207
V +L+ ++ +Y++SF+ N V + + L D L G+ K+G + IL
Sbjct: 12 TNDLPFVQLFLE--EIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILR 69
Query: 1208 AVDHLRNFHY 1217
+
Sbjct: 70 KSKSFQRDKR 79
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 45.3 bits (108), Expect = 7e-06
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L+K GF ++ + QI + + A GK+E GD IV +N V+G
Sbjct: 5 KLRKSSRG-FGFTVVGGDEPDEFL-QIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62
Query: 263 VKQVMALFEESSSDIFLTLK 282
QV+ +F+ + L+
Sbjct: 63 HAQVVKIFQSIPIGASVDLE 82
Score = 45.3 bits (108), Expect = 7e-06
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L+K GF ++ + QI + + A GK+E GD IV +N V+G
Sbjct: 5 KLRKSSRG-FGFTVVGGDEPDEFL-QIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 62
Query: 1404 VKQVMALFEESSSDIFLTLK 1423
QV+ +F+ + L+
Sbjct: 63 HAQVVKIFQSIPIGASVDLE 82
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 45.3 bits (108), Expect = 7e-06
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
T++K LG I + I I I A Q+ + GD I+ +N + +
Sbjct: 9 TVRKADAGGLGISIKGGRENKMPIL-ISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 67
Query: 263 VKQVMALFEESSSDIFLTLKKR 284
+ + +++ ++ L +K
Sbjct: 68 HDEAVQALKKTGKEVVLEVKYM 89
Score = 45.3 bits (108), Expect = 7e-06
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
T++K LG I + I I I A Q+ + GD I+ +N + +
Sbjct: 9 TVRKADAGGLGISIKGGRENKMPIL-ISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 67
Query: 1404 VKQVMALFEESSSDIFLTLKKR 1425
+ + +++ ++ L +K
Sbjct: 68 HDEAVQALKKTGKEVVLEVKYM 89
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 46.3 bits (110), Expect = 8e-06
Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 206 TLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTV- 258
+++ LGF ++ I + D++ S A + +++ D+I+ IN+ +
Sbjct: 30 DIERPSTGGLGFSVVALRSQNLGKVDIF-VKDVQPGSVADRDQRLKENDQILAINHTPLD 88
Query: 259 VGWDVKQVMALFEESSSDIFLTLKKRPCHSK 289
+Q +AL ++++ + L + + P H+K
Sbjct: 89 QNISHQQAIALLQQTTGSLRLIVAREPVHTK 119
Score = 46.3 bits (110), Expect = 8e-06
Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 1347 TLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTV- 1399
+++ LGF ++ I + D++ S A + +++ D+I+ IN+ +
Sbjct: 30 DIERPSTGGLGFSVVALRSQNLGKVDIF-VKDVQPGSVADRDQRLKENDQILAINHTPLD 88
Query: 1400 VGWDVKQVMALFEESSSDIFLTLKKRPCHSK 1430
+Q +AL ++++ + L + + P H+K
Sbjct: 89 QNISHQQAIALLQQTTGSLRLIVAREPVHTK 119
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 46.4 bits (110), Expect = 8e-06
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
L LG +I + + QI + A G ++ GD ++ + + V+G+ +++
Sbjct: 32 KLTVGNLG-LGLVVIQNGPYL-QISHLINKGAAASDGILQPGDVLISVGHANVLGYTLRE 89
Query: 266 VMALFEESSSDIFLTLK 282
+ L + + L +K
Sbjct: 90 FLKLLQNITIGTVLQIK 106
Score = 46.4 bits (110), Expect = 8e-06
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
L LG +I + + QI + A G ++ GD ++ + + V+G+ +++
Sbjct: 32 KLTVGNLG-LGLVVIQNGPYL-QISHLINKGAAASDGILQPGDVLISVGHANVLGYTLRE 89
Query: 1407 VMALFEESSSDIFLTLK 1423
+ L + + L +K
Sbjct: 90 FLKLLQNITIGTVLQIK 106
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 45.4 bits (108), Expect = 8e-06
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 209 KRPGEHLGFCIIPSFH-GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVM 267
+ E LG I G + I A +SG I GDE+ ++N V ++++
Sbjct: 11 VKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEII 70
Query: 268 ALFEESSSDIFLTLK 282
+ +S I +
Sbjct: 71 QILAQSQGAITFKII 85
Score = 45.4 bits (108), Expect = 8e-06
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 1350 KRPGEHLGFCIIPSFH-GIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVM 1408
+ E LG I G + I A +SG I GDE+ ++N V ++++
Sbjct: 11 VKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEII 70
Query: 1409 ALFEESSSDIFLTLK 1423
+ +S I +
Sbjct: 71 QILAQSQGAITFKII 85
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 46.4 bits (110), Expect = 8e-06
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 207 LKKRPGEHLGFCI------------IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQIN 254
K + LGF I + GI I + A +G + DE++++N
Sbjct: 36 CKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIF-ISRLVPGGLAQSTGLLAVNDEVLEVN 94
Query: 255 YQTVVGWDVKQVMALFEESSSDIFLTLK 282
V G + QV + +S ++ +T++
Sbjct: 95 GIEVSGKSLDQVTDMMIANSRNLIITVR 122
Score = 46.4 bits (110), Expect = 8e-06
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 1348 LKKRPGEHLGFCI------------IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQIN 1395
K + LGF I + GI I + A +G + DE++++N
Sbjct: 36 CKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIF-ISRLVPGGLAQSTGLLAVNDEVLEVN 94
Query: 1396 YQTVVGWDVKQVMALFEESSSDIFLTLK 1423
V G + QV + +S ++ +T++
Sbjct: 95 GIEVSGKSLDQVTDMMIANSRNLIITVR 122
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 45.4 bits (108), Expect = 1e-05
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ--------IGDIKCNSTAYQSGKIECGDEIVQINYQT 257
L+K LG II G + + A + G+I+ D+IV+++ +
Sbjct: 14 ELEKDEDG-LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 72
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKRP 285
+VG + + ++ + +
Sbjct: 73 LVGVTQNFAATVLRNTKGNVRFVIGREK 100
Score = 45.4 bits (108), Expect = 1e-05
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ--------IGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
L+K LG II G + + A + G+I+ D+IV+++ +
Sbjct: 14 ELEKDEDG-LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 72
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+VG + + ++ + +
Sbjct: 73 LVGVTQNFAATVLRNTKGNVRFVIGREK 100
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 45.5 bits (108), Expect = 1e-05
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ-IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
L K+ G++ GF + I I+ S A ++G + GD +++IN V +
Sbjct: 6 KLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHA 64
Query: 265 QVMALFEESSSDIFLTLKKRPCHSK 289
QV+ L +S + + L + + K
Sbjct: 65 QVVELVRKSGNSVTLLVLDGDSYEK 89
Score = 45.5 bits (108), Expect = 1e-05
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ-IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
L K+ G++ GF + I I+ S A ++G + GD +++IN V +
Sbjct: 6 KLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHA 64
Query: 1406 QVMALFEESSSDIFLTLKKRPCHSK 1430
QV+ L +S + + L + + K
Sbjct: 65 QVVELVRKSGNSVTLLVLDGDSYEK 89
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 48.8 bits (115), Expect = 1e-05
Identities = 18/174 (10%), Positives = 55/174 (31%), Gaps = 10/174 (5%)
Query: 714 GWLFQRDRKISTVP--QWIRGWFIIKGNHFYGFTDKDSTKAHLF------IYLPGFTVAP 765
+ ++++K+ + +W W +KG + + + +++ V
Sbjct: 22 FLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQA 81
Query: 766 AVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSESEG 824
E + + + + G F SQ E +W+ + A A + +
Sbjct: 82 VPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARH-HHKEDTLRLL 140
Query: 825 EEKSSDKSDSDKSKDHCFSSPKVKKMSNFLTGPLTSSSSKHEKKFSSLKKKKED 878
+ + + +++ S + + + +L++ + D
Sbjct: 141 KSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMD 194
Score = 48.8 bits (115), Expect = 1e-05
Identities = 18/174 (10%), Positives = 55/174 (31%), Gaps = 10/174 (5%)
Query: 1860 GWLFQRDRKISTVP--QWIRGWFIIKGNHFYGFTDKDSTKAHLF------IYLPGFTVAP 1911
+ ++++K+ + +W W +KG + + + +++ V
Sbjct: 22 FLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQA 81
Query: 1912 AVEVKSRKYALKIYH-TGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENITFSESEG 1970
E + + + + G F SQ E +W+ + A A + +
Sbjct: 82 VPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVARH-HHKEDTLRLL 140
Query: 1971 EEKSSDKSDSDKSKDHCFSSPKVKKMSNFLTGPLTSSSSKHEKKFSSLKKKKED 2024
+ + + +++ S + + + +L++ + D
Sbjct: 141 KSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMD 194
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 44.3 bits (105), Expect = 1e-05
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 192 HDPLLLQPSSLDLATLKKRPGE--HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDE 249
H L+ L +RP LGF + I + A + G + G
Sbjct: 1 HHHHHLETMGNVTTVLIRRPDLRYQLGFSVQNGI-----ICSLMRGGIAERGG-VRVGHR 54
Query: 250 IVQINYQTVVGWDVKQVMALFEESSSDIFLTL 281
I++IN Q+VV ++++ + + +I +
Sbjct: 55 IIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
Score = 44.3 bits (105), Expect = 1e-05
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 1333 HDPLLLQPSSLDLATLKKRPGE--HLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDE 1390
H L+ L +RP LGF + I + A + G + G
Sbjct: 1 HHHHHLETMGNVTTVLIRRPDLRYQLGFSVQNGI-----ICSLMRGGIAERGG-VRVGHR 54
Query: 1391 IVQINYQTVVGWDVKQVMALFEESSSDIFLTL 1422
I++IN Q+VV ++++ + + +I +
Sbjct: 55 IIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 45.1 bits (107), Expect = 1e-05
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 193 DPLLLQPSSLDLATLKKRPGEHLGFCII-------PSFHGIHQIGDIKCNSTAYQSGKIE 245
L L + + L K LGF I+ P+ I I + + A +SG +
Sbjct: 7 GELALWSPEVKIVELVKDCK-GLGFSILDYQDPLDPTRSVI-VIRSLVADGVAERSGGLL 64
Query: 246 CGDEIVQINYQTVVGWDVKQVMALFEESSSD-IFLTLKKRP 285
GD +V +N + + + + + + + L + P
Sbjct: 65 PGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
Score = 45.1 bits (107), Expect = 1e-05
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 1334 DPLLLQPSSLDLATLKKRPGEHLGFCII-------PSFHGIHQIGDIKCNSTAYQSGKIE 1386
L L + + L K LGF I+ P+ I I + + A +SG +
Sbjct: 7 GELALWSPEVKIVELVKDCK-GLGFSILDYQDPLDPTRSVI-VIRSLVADGVAERSGGLL 64
Query: 1387 CGDEIVQINYQTVVGWDVKQVMALFEESSSD-IFLTLKKRP 1426
GD +V +N + + + + + + + L + P
Sbjct: 65 PGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 45.0 bits (107), Expect = 2e-05
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
L++ P LG +I H I + S A G++ GD I+++N +++G
Sbjct: 13 ELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLG 71
Query: 261 WDVKQVMALFEESSSDIFLTLKKRP 285
+ + L + + K
Sbjct: 72 LGYLRAVDLIRHGGKKMRFLVAKSD 96
Score = 45.0 bits (107), Expect = 2e-05
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
L++ P LG +I H I + S A G++ GD I+++N +++G
Sbjct: 13 ELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLG 71
Query: 1402 WDVKQVMALFEESSSDIFLTLKKRP 1426
+ + L + + K
Sbjct: 72 LGYLRAVDLIRHGGKKMRFLVAKSD 96
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 44.2 bits (105), Expect = 2e-05
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L ++ GF I+ I IG I A G++ GDE++ ++ V+G
Sbjct: 7 FLWRKETG-FGFRILGGNEPGEPI-YIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS 64
Query: 263 VKQVMALFEESSSDIFLTLK-KRP 285
+ V+ L ++++ + L ++
Sbjct: 65 HQLVVQLMQQAAKQGHVNLTVRQT 88
Score = 44.2 bits (105), Expect = 2e-05
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L ++ GF I+ I IG I A G++ GDE++ ++ V+G
Sbjct: 7 FLWRKETG-FGFRILGGNEPGEPI-YIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS 64
Query: 1404 VKQVMALFEESSSDIFLTLK-KRP 1426
+ V+ L ++++ + L ++
Sbjct: 65 HQLVVQLMQQAAKQGHVNLTVRQT 88
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 47.6 bits (112), Expect = 2e-05
Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 21/153 (13%)
Query: 712 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK------------DSTKAHLFIYLP 759
G+L + + +F+++ G + S+ I L
Sbjct: 12 KVGYLRKP-------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLE 64
Query: 760 G-FTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENIT 818
F + + K K+ + +Y F ++ADS+ E SW L Q
Sbjct: 65 SCFNINKRADSK-NKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDGAAA 123
Query: 819 FSESEGEEKSSDKSDSDKSKDHCFSSPKVKKMS 851
G S S ++ + +
Sbjct: 124 LGAGGGGGSCSGSSGLGEAGEDLSYGDVPPGPA 156
Score = 47.6 bits (112), Expect = 2e-05
Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 21/153 (13%)
Query: 1858 CEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDK------------DSTKAHLFIYLP 1905
G+L + + +F+++ G + S+ I L
Sbjct: 12 KVGYLRKP-------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLE 64
Query: 1906 G-FTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQATIAHDRSPVENIT 1964
F + + K K+ + +Y F ++ADS+ E SW L Q
Sbjct: 65 SCFNINKRADSK-NKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDGAAA 123
Query: 1965 FSESEGEEKSSDKSDSDKSKDHCFSSPKVKKMS 1997
G S S ++ + +
Sbjct: 124 LGAGGGGGSCSGSSGLGEAGEDLSYGDVPPGPA 156
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 45.8 bits (108), Expect = 2e-05
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 1144 NTPINNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDD----LEHHGICKV 1199
+ ++NW + WL V + +Y ++F +N+V G L + + + I
Sbjct: 75 TSEVHNWTLEDTLQWLIE-FVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDR 133
Query: 1200 GH-QEIILEAVD 1210
H Q++ L+A+D
Sbjct: 134 SHRQKLQLKALD 145
Score = 41.9 bits (98), Expect = 4e-04
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 8 DWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDD----LEHHGICKVGH-QE 62
+W + WL V + +Y ++F +N+V G L + + + I H Q+
Sbjct: 80 NWTLEDTLQWLIE-FVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQK 138
Query: 63 IILEAVD 69
+ L+A+D
Sbjct: 139 LQLKALD 145
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide exchange
factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Length = 219
Score = 47.0 bits (110), Expect = 2e-05
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 24/76 (31%)
Query: 1098 VSAFVTPTGVKFLMVHDSK-----------------------NEEGIKKFFTSVYELFIK 1134
+ + T TG+KF+ + S + F VY L+
Sbjct: 129 MFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188
Query: 1135 YSL-NPFYKINTPINN 1149
Y + +P Y + PI +
Sbjct: 189 YVMKDPSYSMEMPIRS 204
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 44.8 bits (106), Expect = 2e-05
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 206 TLKKRPGEHLGFCII-----PSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTV 258
G LG I+ P G I +A Q+GK+ G ++++ N +
Sbjct: 23 KDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPL 82
Query: 259 VGWDVKQVMALFEESSSDIFLTLKKRP 285
++V ++ + S + + ++
Sbjct: 83 TSKTYEEVQSIISQQSGEAEICVRLDL 109
Score = 44.8 bits (106), Expect = 2e-05
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 1347 TLKKRPGEHLGFCII-----PSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTV 1399
G LG I+ P G I +A Q+GK+ G ++++ N +
Sbjct: 23 KDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPL 82
Query: 1400 VGWDVKQVMALFEESSSDIFLTLKKRP 1426
++V ++ + S + + ++
Sbjct: 83 TSKTYEEVQSIISQQSGEAEICVRLDL 109
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 45.2 bits (107), Expect = 2e-05
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQ---IGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
L LG + G I I A++ G++ D+++ +N +T++
Sbjct: 30 PLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89
Query: 260 GWD-------VKQVMALFEESSSDIFLTLKKRP 285
G +++ M++ I L + +R
Sbjct: 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122
Score = 45.2 bits (107), Expect = 2e-05
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQ---IGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
L LG + G I I A++ G++ D+++ +N +T++
Sbjct: 30 PLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89
Query: 1401 GWD-------VKQVMALFEESSSDIFLTLKKRP 1426
G +++ M++ I L + +R
Sbjct: 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 44.2 bits (105), Expect = 2e-05
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 209 KRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
KR G LG I F I I + A ++G I GD I+ IN ++ G + +
Sbjct: 12 KRYGGPLGITISGTEEPFDPII-ISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSE 70
Query: 266 VMALFEESSSDIFLTLKKRP 285
+ L + + + L +KK+
Sbjct: 71 AIHLLQMAGETVTLKIKKQT 90
Score = 44.2 bits (105), Expect = 2e-05
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 1350 KRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
KR G LG I F I I + A ++G I GD I+ IN ++ G + +
Sbjct: 12 KRYGGPLGITISGTEEPFDPII-ISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSE 70
Query: 1407 VMALFEESSSDIFLTLKKRP 1426
+ L + + + L +KK+
Sbjct: 71 AIHLLQMAGETVTLKIKKQT 90
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 43.5 bits (103), Expect = 3e-05
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 199 PSSLDLATLKKRP-GEHLGFCIIPSFH--GIHQIGDIKCNSTAYQSGKIECGDEIVQINY 255
P L TL K E GF + G++ + +I+ G ++ D ++Q+N+
Sbjct: 4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVY-VKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 256 QTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+D V+ L ES + + L + + P
Sbjct: 62 VRTRDFDCCLVVPLIAESGNKLDLVISRNP 91
Score = 43.5 bits (103), Expect = 3e-05
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 1340 PSSLDLATLKKRP-GEHLGFCIIPSFH--GIHQIGDIKCNSTAYQSGKIECGDEIVQINY 1396
P L TL K E GF + G++ + +I+ G ++ D ++Q+N+
Sbjct: 4 PVELHKVTLYKDSGMEDFGFSVADGLLEKGVY-VKNIRPAGPGDLGG-LKPYDRLLQVNH 61
Query: 1397 QTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+D V+ L ES + + L + + P
Sbjct: 62 VRTRDFDCCLVVPLIAESGNKLDLVISRNP 91
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 47.7 bits (112), Expect = 3e-05
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSR 772
G+L R++ W R ++ +G + + L + + +V + + R
Sbjct: 281 AGYLNARNKTGLVSSTWDRQFYFTQGGNLM-SQARGDVAGGLAMDIDNCSVMAV-DCEDR 338
Query: 773 KYALKI--YHTGTTFYLSADSQDEFSSWLGCLSQA 805
+Y +I + + L A+S+ + W+ ++
Sbjct: 339 RYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 373
Score = 47.7 bits (112), Expect = 3e-05
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPGFTVAPAVEVKSR 1918
G+L R++ W R ++ +G + + L + + +V + + R
Sbjct: 281 AGYLNARNKTGLVSSTWDRQFYFTQGGNLM-SQARGDVAGGLAMDIDNCSVMAV-DCEDR 338
Query: 1919 KYALKI--YHTGTTFYLSADSQDEFSSWLGCLSQA 1951
+Y +I + + L A+S+ + W+ ++
Sbjct: 339 RYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 373
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 44.4 bits (105), Expect = 3e-05
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 206 TLKKRPGEHLGFCII------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 253
L + P + LG I+ GI I + +S A ++G ++ GD IV++
Sbjct: 29 ELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIF-IKHVLEDSPAGKNGTLKPGDRIVEV 87
Query: 254 NYQTVVGWDVKQVMALFEESSSDIFLTLKKR 284
+ + +Q + ++ + + ++
Sbjct: 88 DGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118
Score = 44.4 bits (105), Expect = 3e-05
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 1347 TLKKRPGEHLGFCII------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 1394
L + P + LG I+ GI I + +S A ++G ++ GD IV++
Sbjct: 29 ELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIF-IKHVLEDSPAGKNGTLKPGDRIVEV 87
Query: 1395 NYQTVVGWDVKQVMALFEESSSDIFLTLKKR 1425
+ + +Q + ++ + + ++
Sbjct: 88 DGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 44.0 bits (104), Expect = 4e-05
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 206 TLKKRPGEHLGFCIIPS-FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
L K+ G++ GF + H I I+ S A ++G + GD +++IN V +
Sbjct: 18 KLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHA 76
Query: 265 QVMALFEESSSDIFLTLKKRPCHSK 289
QV+ L +S + + L + + K
Sbjct: 77 QVVELVRKSGNSVTLLVLDGDSYEK 101
Score = 44.0 bits (104), Expect = 4e-05
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 1347 TLKKRPGEHLGFCIIPS-FHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
L K+ G++ GF + H I I+ S A ++G + GD +++IN V +
Sbjct: 18 KLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHA 76
Query: 1406 QVMALFEESSSDIFLTLKKRPCHSK 1430
QV+ L +S + + L + + K
Sbjct: 77 QVVELVRKSGNSVTLLVLDGDSYEK 101
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 44.4 bits (104), Expect = 4e-05
Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 26/123 (21%)
Query: 709 MPDCEGWLFQRDRKISTVPQWIRGWFIIKGNH--FYGFTDKDSTKA-------------- 752
+P + +L +R S +W + + + N Y + D +
Sbjct: 3 IPIKQSFLLKRSGN-SLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVK 61
Query: 753 --------HLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQ 804
+ + P + + + L + TG T++ A S +E +W+ + +
Sbjct: 62 VPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAI-E 120
Query: 805 ATI 807
+ I
Sbjct: 121 SQI 123
Score = 44.4 bits (104), Expect = 4e-05
Identities = 18/123 (14%), Positives = 42/123 (34%), Gaps = 26/123 (21%)
Query: 1855 MPDCEGWLFQRDRKISTVPQWIRGWFIIKGNH--FYGFTDKDSTKA-------------- 1898
+P + +L +R S +W + + + N Y + D +
Sbjct: 3 IPIKQSFLLKRSGN-SLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVK 61
Query: 1899 --------HLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQ 1950
+ + P + + + L + TG T++ A S +E +W+ + +
Sbjct: 62 VPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAI-E 120
Query: 1951 ATI 1953
+ I
Sbjct: 121 SQI 123
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 43.9 bits (104), Expect = 4e-05
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 208 KKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
+++ LG I GI+ + + S A G+IE D+I++++ V
Sbjct: 20 REKDTSSLGISISGMRDQSTTGEATGIY-VKSLIPGSAAALDGRIEPNDKILRVDDVNVQ 78
Query: 260 GWDVKQVMALFEESSSDIFLTLKKRP 285
G V+ + + + + L L +R
Sbjct: 79 GMAQSDVVEVLRNAGNPVRLLLIRRL 104
Score = 43.9 bits (104), Expect = 4e-05
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 1349 KKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
+++ LG I GI+ + + S A G+IE D+I++++ V
Sbjct: 20 REKDTSSLGISISGMRDQSTTGEATGIY-VKSLIPGSAAALDGRIEPNDKILRVDDVNVQ 78
Query: 1401 GWDVKQVMALFEESSSDIFLTLKKRP 1426
G V+ + + + + L L +R
Sbjct: 79 GMAQSDVVEVLRNAGNPVRLLLIRRL 104
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 45.5 bits (108), Expect = 4e-05
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 209 KRPGEHLGFCIIPSFHGIHQ-------IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
+ + LGF I H + I A++ G+++ GD+I+ +N +
Sbjct: 107 IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDV 166
Query: 262 DVKQVMALFEESSSDIFLTLKKRP 285
+ +A + + ++L + K
Sbjct: 167 MHEDAVAALKNTYDVVYLKVAKPS 190
Score = 45.5 bits (108), Expect = 4e-05
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 1350 KRPGEHLGFCIIPSFHGIHQ-------IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
+ + LGF I H + I A++ G+++ GD+I+ +N +
Sbjct: 107 IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDV 166
Query: 1403 DVKQVMALFEESSSDIFLTLKKRP 1426
+ +A + + ++L + K
Sbjct: 167 MHEDAVAALKNTYDVVYLKVAKPS 190
Score = 45.5 bits (108), Expect = 5e-05
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 209 KRPGEHLGFCII-----PSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
+R LGF I P I I A Q G++ D I+ +N V
Sbjct: 12 ERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 71
Query: 262 DVKQVMALFEESSSDIFLTLKKRPCH 287
+ +E+ S + L + +R
Sbjct: 72 THSAAVEALKEAGSIVRLYVMRRKPP 97
Score = 45.5 bits (108), Expect = 5e-05
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 1350 KRPGEHLGFCII-----PSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
+R LGF I P I I A Q G++ D I+ +N V
Sbjct: 12 ERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 71
Query: 1403 DVKQVMALFEESSSDIFLTLKKRPCH 1428
+ +E+ S + L + +R
Sbjct: 72 THSAAVEALKEAGSIVRLYVMRRKPP 97
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 47.3 bits (111), Expect = 4e-05
Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 6/153 (3%)
Query: 142 FIDKKAELLRLSLEMAFS--GQRGKFADHPIENIRNSAKGLSELADEMIREIHDPLLLQP 199
F + A+L+ S+ AFS Q A+ + + + + +
Sbjct: 143 FESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNS 202
Query: 200 SSLDLATLKKRPGEHLGFCIIPSFHGIHQ----IGDIKCNSTAYQSGKIECGDEIVQINY 255
+ L+K GE LG ++ S G + ++ A +SGK+ GD+I+ IN
Sbjct: 203 ENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSING 262
Query: 256 QTVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 288
++VG + + + + + L C
Sbjct: 263 TSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPP 295
Score = 47.3 bits (111), Expect = 4e-05
Identities = 30/153 (19%), Positives = 58/153 (37%), Gaps = 6/153 (3%)
Query: 1283 FIDKKAELLRLSLEMAFS--GQRGKFADHPIENIRNSAKGLSELADEMIREIHDPLLLQP 1340
F + A+L+ S+ AFS Q A+ + + + + +
Sbjct: 143 FESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNS 202
Query: 1341 SSLDLATLKKRPGEHLGFCIIPSFHGIHQ----IGDIKCNSTAYQSGKIECGDEIVQINY 1396
+ L+K GE LG ++ S G + ++ A +SGK+ GD+I+ IN
Sbjct: 203 ENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSING 262
Query: 1397 QTVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 1429
++VG + + + + + L C
Sbjct: 263 TSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPP 295
Score = 44.6 bits (104), Expect = 3e-04
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
+ LGF + I + A + G + G I++IN Q+VV ++
Sbjct: 301 IKRPDLKYQLGFSVQNGI-----ICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEK 354
Query: 266 VMALFEESSSDIFLTLKKRPCHSKILGQ 293
++ S +I + + GQ
Sbjct: 355 IVQALSNSVGEIHMKTMPAAMFRLLTGQ 382
Score = 44.6 bits (104), Expect = 3e-04
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
+ LGF + I + A + G + G I++IN Q+VV ++
Sbjct: 301 IKRPDLKYQLGFSVQNGI-----ICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEK 354
Query: 1407 VMALFEESSSDIFLTLKKRPCHSKILGQ 1434
++ S +I + + GQ
Sbjct: 355 IVQALSNSVGEIHMKTMPAAMFRLLTGQ 382
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 43.6 bits (103), Expect = 5e-05
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 206 TLKKRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 256
T++K+ E GF I S I I+ +S A+ +G ++ GD + IN
Sbjct: 20 TVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGV 78
Query: 257 TVVGWDVKQVMALFEESSSDIFLT 280
+ G+ KQV+ L S + + +
Sbjct: 79 STEGFTYKQVVDLIRSSGNLLTIE 102
Score = 43.6 bits (103), Expect = 5e-05
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 1347 TLKKRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 1397
T++K+ E GF I S I I+ +S A+ +G ++ GD + IN
Sbjct: 20 TVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGV 78
Query: 1398 TVVGWDVKQVMALFEESSSDIFLT 1421
+ G+ KQV+ L S + + +
Sbjct: 79 STEGFTYKQVVDLIRSSGNLLTIE 102
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 44.0 bits (104), Expect = 5e-05
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
++ + G LG ++ + G +K S A G + GDE+++ N + + G
Sbjct: 41 SVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQG 100
Query: 261 WDVKQVMALFEESSSDIFLTL 281
++V + ES + + L
Sbjct: 101 ATFEEVYNIILESKPEPQVEL 121
Score = 44.0 bits (104), Expect = 5e-05
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
++ + G LG ++ + G +K S A G + GDE+++ N + + G
Sbjct: 41 SVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQG 100
Query: 1402 WDVKQVMALFEESSSDIFLTL 1422
++V + ES + + L
Sbjct: 101 ATFEEVYNIILESKPEPQVEL 121
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 43.7 bits (103), Expect = 6e-05
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 208 KKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
+ + LG + GI+ I +I NS A + G+I GD I+QIN V
Sbjct: 27 RMNSQDKLGLTVCYRTDDEDDIGIY-ISEIDPNSIAAKDGRIREGDRIIQINGIEVQN-- 83
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
++ +AL + F L RP
Sbjct: 84 REEAVALLTSEENKNFSLLIARP 106
Score = 43.7 bits (103), Expect = 6e-05
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 1349 KKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
+ + LG + GI+ I +I NS A + G+I GD I+QIN V
Sbjct: 27 RMNSQDKLGLTVCYRTDDEDDIGIY-ISEIDPNSIAAKDGRIREGDRIIQINGIEVQN-- 83
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
++ +AL + F L RP
Sbjct: 84 REEAVALLTSEENKNFSLLIARP 106
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 42.7 bits (101), Expect = 6e-05
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 207 LKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQV 266
+K R E G + I + ++ A + G + GD I++IN +
Sbjct: 7 MKSRANEEYG---LRLGSQIF-VKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA 62
Query: 267 MALFEESSSDIFLTLKKR 284
L E+S + L + +
Sbjct: 63 RKLIEKSRGKLQLVVLRD 80
Score = 42.7 bits (101), Expect = 6e-05
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 1348 LKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQV 1407
+K R E G + I + ++ A + G + GD I++IN +
Sbjct: 7 MKSRANEEYG---LRLGSQIF-VKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDA 62
Query: 1408 MALFEESSSDIFLTLKKR 1425
L E+S + L + +
Sbjct: 63 RKLIEKSRGKLQLVVLRD 80
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 97
Score = 43.0 bits (101), Expect = 6e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 14 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72
V+DWL + + Y + + + +L L+ GI + H +L A +
Sbjct: 26 VSDWLISIGLP--MYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFK 83
Score = 43.0 bits (101), Expect = 6e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 1155 VADWLKGLDVSIHRYVESFLNNHVNG-QHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213
V+DWL + + Y + + + +L L+ GI + H +L A +
Sbjct: 26 VSDWLISIGLP--MYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFK 83
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 43.0 bits (102), Expect = 6e-05
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 209 KRPGEHLGFCIIPSFHGIHQ------IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
+ G GF I H I ++ A + G I+ GD ++ ++ ++G
Sbjct: 10 HKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 69
Query: 263 VKQVMALFEESSSDIFLTLKKRPCHSKI 290
+ M++ ++ + L ++ + +
Sbjct: 70 HAEAMSILKQCGQEAALLIEYDVSETAV 97
Score = 43.0 bits (102), Expect = 6e-05
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 1350 KRPGEHLGFCIIPSFHGIHQ------IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
+ G GF I H I ++ A + G I+ GD ++ ++ ++G
Sbjct: 10 HKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 69
Query: 1404 VKQVMALFEESSSDIFLTLKKRPCHSKI 1431
+ M++ ++ + L ++ + +
Sbjct: 70 HAEAMSILKQCGQEAALLIEYDVSETAV 97
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 43.5 bits (103), Expect = 6e-05
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 198 QPSSLDLATLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 251
Q +++ L K P LGF ++ GI + +I+ S A++ G+++ D+I+
Sbjct: 17 QGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIF-VQEIQEGSVAHRDGRLKETDQIL 75
Query: 252 QINYQTV-VGWDVKQVMALFEESSSDIFLTLKKRP 285
IN Q + +Q +++ +++ + L + +
Sbjct: 76 AINGQALDQTITHQQAISILQKAKDTVQLVIARGS 110
Score = 43.5 bits (103), Expect = 6e-05
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 1339 QPSSLDLATLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 1392
Q +++ L K P LGF ++ GI + +I+ S A++ G+++ D+I+
Sbjct: 17 QGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIF-VQEIQEGSVAHRDGRLKETDQIL 75
Query: 1393 QINYQTV-VGWDVKQVMALFEESSSDIFLTLKKRP 1426
IN Q + +Q +++ +++ + L + +
Sbjct: 76 AINGQALDQTITHQQAISILQKAKDTVQLVIARGS 110
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 44.4 bits (105), Expect = 7e-05
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
L K +G + +GI + ++ NS A G + GD+++QIN + GW +
Sbjct: 9 ILCKDQDGKIGLRLKSIDNGIF-VQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDK 66
Query: 266 VMALFEESS-SDIFLTLKKRPCHSKI 290
+ +++ I +T++ RP I
Sbjct: 67 AHKVLKQAFGEKITMTIRDRPFERTI 92
Score = 44.4 bits (105), Expect = 7e-05
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
L K +G + +GI + ++ NS A G + GD+++QIN + GW +
Sbjct: 9 ILCKDQDGKIGLRLKSIDNGIF-VQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDK 66
Query: 1407 VMALFEESS-SDIFLTLKKRPCHSKI 1431
+ +++ I +T++ RP I
Sbjct: 67 AHKVLKQAFGEKITMTIRDRPFERTI 92
Score = 34.0 bits (78), Expect = 0.23
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
T+ K H+GF I +S+A ++G + I +IN Q V+G Q
Sbjct: 93 TMHKDSTGHVGFIFKNGKIT-----SIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQ 146
Query: 266 VMALFEESSSDIFLTL 281
+ + S + + +T+
Sbjct: 147 IADILSTSGTVVTITI 162
Score = 34.0 bits (78), Expect = 0.23
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
T+ K H+GF I +S+A ++G + I +IN Q V+G Q
Sbjct: 93 TMHKDSTGHVGFIFKNGKIT-----SIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQ 146
Query: 1407 VMALFEESSSDIFLTL 1422
+ + S + + +T+
Sbjct: 147 IADILSTSGTVVTITI 162
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 42.6 bits (100), Expect = 7e-05
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 198 QPSSLDLATLKKRPG--EHLGFCI-IPSFHGIHQ--IGDIKCNSTAYQSGKIECGDEIVQ 252
++K + GF + GI + + +K A + G ++ GDEI++
Sbjct: 3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILE 61
Query: 253 INYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
IN + + + + S + L ++ P
Sbjct: 62 INNRAADALNSSMLKDFLSQPS--LGLLVRTYP 92
Score = 42.6 bits (100), Expect = 7e-05
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 1339 QPSSLDLATLKKRPG--EHLGFCI-IPSFHGIHQ--IGDIKCNSTAYQSGKIECGDEIVQ 1393
++K + GF + GI + + +K A + G ++ GDEI++
Sbjct: 3 MGKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILE 61
Query: 1394 INYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
IN + + + + S + L ++ P
Sbjct: 62 INNRAADALNSSMLKDFLSQPS--LGLLVRTYP 92
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 43.2 bits (102), Expect = 8e-05
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 198 QPSSLDLATLKKRPGEHLGFCII----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 253
Q + + L K G LGF + I + + N A Q G I+ G+E++ I
Sbjct: 12 QLDGIHVTILHKEEGAGLGFSLAGGADLENKVI-TVHRVFPNGLASQEGTIQKGNEVLSI 70
Query: 254 NYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
N +++ G +A+ ++ + R
Sbjct: 71 NGKSLKGTTHHDALAILRQAREPRQAVIVTRK 102
Score = 43.2 bits (102), Expect = 8e-05
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 1339 QPSSLDLATLKKRPGEHLGFCII----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 1394
Q + + L K G LGF + I + + N A Q G I+ G+E++ I
Sbjct: 12 QLDGIHVTILHKEEGAGLGFSLAGGADLENKVI-TVHRVFPNGLASQEGTIQKGNEVLSI 70
Query: 1395 NYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
N +++ G +A+ ++ + R
Sbjct: 71 NGKSLKGTTHHDALAILRQAREPRQAVIVTRK 102
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 42.3 bits (100), Expect = 8e-05
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 201 SLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 257
S+D + GF + + I + A Q+G + GD ++ I+ +
Sbjct: 1 SMDSFKVVLEGPAPWGFRLQGGKDFNVPL-SISRLTPGGKAAQAG-VAVGDWVLSIDGEN 58
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKRPCH 287
+ + L L +
Sbjct: 59 AGSLTHIEAQNKIRACGERLSLGLSRAITS 88
Score = 42.3 bits (100), Expect = 8e-05
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 1342 SLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
S+D + GF + + I + A Q+G + GD ++ I+ +
Sbjct: 1 SMDSFKVVLEGPAPWGFRLQGGKDFNVPL-SISRLTPGGKAAQAG-VAVGDWVLSIDGEN 58
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKRPCH 1428
+ + L L +
Sbjct: 59 AGSLTHIEAQNKIRACGERLSLGLSRAITS 88
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 43.1 bits (102), Expect = 8e-05
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 193 DPLLLQPSSLDLATLKKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECG 247
P + ++ L LGF I+ + I A + G+++ G
Sbjct: 7 GPETVCWGHVEEVELINDGSG-LGFGIVGGKTSGVV-----VRTIVPGGLADRDGRLQTG 60
Query: 248 DEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
D I++I V G +QV + + + + + + P
Sbjct: 61 DHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDP 98
Score = 43.1 bits (102), Expect = 8e-05
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 1334 DPLLLQPSSLDLATLKKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECG 1388
P + ++ L LGF I+ + I A + G+++ G
Sbjct: 7 GPETVCWGHVEEVELINDGSG-LGFGIVGGKTSGVV-----VRTIVPGGLADRDGRLQTG 60
Query: 1389 DEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
D I++I V G +QV + + + + + + P
Sbjct: 61 DHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDP 98
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 42.7 bits (101), Expect = 9e-05
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ--------IGDIKCNSTAYQSGKIECGDEIVQINYQT 257
L+K E LG II G + + A++ G+I+ D +V+++ +
Sbjct: 9 ELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 67
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKRP 285
+VG ++ + + + +
Sbjct: 68 LVGVTQSFAASVLRNTKGRVRFMIGRER 95
Score = 42.7 bits (101), Expect = 9e-05
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 9/88 (10%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ--------IGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
L+K E LG II G + + A++ G+I+ D +V+++ +
Sbjct: 9 ELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 67
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+VG ++ + + + +
Sbjct: 68 LVGVTQSFAASVLRNTKGRVRFMIGRER 95
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 42.7 bits (101), Expect = 9e-05
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 206 TLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
LKK LGF I I + +I A Q G+++ GD ++++N +
Sbjct: 16 QLKKGTEG-LGFSITSRDVTIGGSAPI-YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLA 73
Query: 260 GWDVKQVMALFEESSSDIFLTL 281
G ++V++L + + ++L
Sbjct: 74 GKSQEEVVSLLRSTKMEGTVSL 95
Score = 42.7 bits (101), Expect = 9e-05
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1347 TLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
LKK LGF I I + +I A Q G+++ GD ++++N +
Sbjct: 16 QLKKGTEG-LGFSITSRDVTIGGSAPI-YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLA 73
Query: 1401 GWDVKQVMALFEESSSDIFLTL 1422
G ++V++L + + ++L
Sbjct: 74 GKSQEEVVSLLRSTKMEGTVSL 95
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 45.9 bits (108), Expect = 1e-04
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYL----PGFTV----A 764
EG++ + K + + WF + F D A +++ G+TV
Sbjct: 272 EGYMEKTGPK--QTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFP 329
Query: 765 PAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 805
P+ + + + I F + +++ + W+ +A
Sbjct: 330 PSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKA 370
Score = 45.9 bits (108), Expect = 1e-04
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYL----PGFTV----A 1910
EG++ + K + + WF + F D A +++ G+TV
Sbjct: 272 EGYMEKTGPK--QTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFP 329
Query: 1911 PAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLGCLSQA 1951
P+ + + + I F + +++ + W+ +A
Sbjct: 330 PSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKA 370
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 42.7 bits (100), Expect = 1e-04
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 14 VADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72
+ WLK L +H+Y ++ + L+ L + LE G+ +G + +L+A +
Sbjct: 52 IPMWLKSL--RLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVI 106
Score = 42.7 bits (100), Expect = 1e-04
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 1155 VADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213
+ WLK L +H+Y ++ + L+ L + LE G+ +G + +L+A +
Sbjct: 52 IPMWLKSL--RLHKYSDAL--SGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVI 106
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 42.0 bits (99), Expect = 1e-04
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
TLKK PG LGF I S GI I + +S A+++G ++ GD+++ +N +
Sbjct: 20 TLKKPPGAQLGFNIRGGKASQLGIF-ISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIE 77
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
+ + + +++ +I + ++
Sbjct: 78 HSKAVEIL-KTAREISMRVRFFS 99
Score = 42.0 bits (99), Expect = 1e-04
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
TLKK PG LGF I S GI I + +S A+++G ++ GD+++ +N +
Sbjct: 20 TLKKPPGAQLGFNIRGGKASQLGIF-ISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIE 77
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
+ + + +++ +I + ++
Sbjct: 78 HSKAVEIL-KTAREISMRVRFFS 99
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 41.8 bits (99), Expect = 1e-04
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 198 QPSSLDLATLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 251
+P + L K LG + GI+ + + A G+I GD ++
Sbjct: 2 KPGDIFEVELAKNDNS-LGISVTGGVNTSVRHGGIY-VKAVIPQGAAESDGRIHKGDRVL 59
Query: 252 QINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+N ++ G KQ + + + L L+K
Sbjct: 60 AVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 93
Score = 41.8 bits (99), Expect = 1e-04
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 1339 QPSSLDLATLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 1392
+P + L K LG + GI+ + + A G+I GD ++
Sbjct: 2 KPGDIFEVELAKNDNS-LGISVTGGVNTSVRHGGIY-VKAVIPQGAAESDGRIHKGDRVL 59
Query: 1393 QINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+N ++ G KQ + + + L L+K
Sbjct: 60 AVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 93
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 42.0 bits (99), Expect = 2e-04
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 206 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
K+ LG I + + +I I+ +A+ G+++ G I+++N T+ G
Sbjct: 10 VRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
Score = 42.0 bits (99), Expect = 2e-04
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 1347 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
K+ LG I + + +I I+ +A+ G+++ G I+++N T+ G
Sbjct: 10 VRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 41.6 bits (98), Expect = 2e-04
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
T+++ GF I ++ + A ++G ++ D ++Q+N + V W +
Sbjct: 20 TIRRGKDG-FGFTI--CCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVE 75
Query: 266 VMALFEESSSDIFLTLKKRP 285
+ S+I L + +
Sbjct: 76 LAHEIRSCPSEIILLVWRVS 95
Score = 41.6 bits (98), Expect = 2e-04
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
T+++ GF I ++ + A ++G ++ D ++Q+N + V W +
Sbjct: 20 TIRRGKDG-FGFTI--CCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVE 75
Query: 1407 VMALFEESSSDIFLTLKKRP 1426
+ S+I L + +
Sbjct: 76 LAHEIRSCPSEIILLVWRVS 95
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 193 DPLLLQPSSLDLATLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDE 249
+ L Q L++ GF + ++ + + + A +SGK+ GDE
Sbjct: 16 ENLYFQSMDFYTVELERGAKG-FGFSLRGGREYNMDLY-VLRLAEDGPAERSGKMRIGDE 73
Query: 250 IVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
I++IN +T + + L + + L LK+
Sbjct: 74 ILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGE 109
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 1334 DPLLLQPSSLDLATLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDE 1390
+ L Q L++ GF + ++ + + + A +SGK+ GDE
Sbjct: 16 ENLYFQSMDFYTVELERGAKG-FGFSLRGGREYNMDLY-VLRLAEDGPAERSGKMRIGDE 73
Query: 1391 IVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
I++IN +T + + L + + L LK+
Sbjct: 74 ILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGE 109
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 41.9 bits (99), Expect = 2e-04
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 206 TLKKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 257
L++ LGF I P GI I I A G++ D ++++N
Sbjct: 9 VLERGNSG-LGFSIAGGIDNPHVPDDPGIF-ITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKRP 285
V + + +E+ + L +++R
Sbjct: 67 VSEVVHSRAVEALKEAGPVVRLVVRRRQ 94
Score = 41.9 bits (99), Expect = 2e-04
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 1347 TLKKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
L++ LGF I P GI I I A G++ D ++++N
Sbjct: 9 VLERGNSG-LGFSIAGGIDNPHVPDDPGIF-ITKIIPGGAAAMDGRLGVNDCVLRVNEVD 66
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKRP 1426
V + + +E+ + L +++R
Sbjct: 67 VSEVVHSRAVEALKEAGPVVRLVVRRRQ 94
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA
binding protein; 1.60A {Saccharomyces cerevisiae} PDB:
2f8k_A 2fe9_A
Length = 88
Score = 41.4 bits (97), Expect = 2e-04
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 14 VADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 72
+ WLK L +H+Y ++ L+ L + LE G+ +G + +L+A +
Sbjct: 21 IPMWLKSL--RLHKYSDALSGTPW--IELIYLDDETLEKKGVLALGARRKLLKAFGIVI 75
Score = 41.4 bits (97), Expect = 2e-04
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 1155 VADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHLR 1213
+ WLK L +H+Y ++ L+ L + LE G+ +G + +L+A +
Sbjct: 21 IPMWLKSL--RLHKYSDALSGTPW--IELIYLDDETLEKKGVLALGARRKLLKAFGIVI 75
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 41.5 bits (98), Expect = 2e-04
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 206 TLKKRPGEHLGFCII-------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTV 258
L K LG I GI + I +S G+I+ GD+I+ ++ +
Sbjct: 9 ELTKNVQG-LGITIAGYIGDKKLEPSGIF-VKSITKSSAVEHDGRIQIGDQIIAVDGTNL 66
Query: 259 VGWDVKQVMALFEESSSDIFLTLKKRP 285
G+ +Q + + + + LTL +R
Sbjct: 67 QGFTNQQAVEVLRHTGQTVLLTLMRRG 93
Score = 41.5 bits (98), Expect = 2e-04
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 1347 TLKKRPGEHLGFCII-------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTV 1399
L K LG I GI + I +S G+I+ GD+I+ ++ +
Sbjct: 9 ELTKNVQG-LGITIAGYIGDKKLEPSGIF-VKSITKSSAVEHDGRIQIGDQIIAVDGTNL 66
Query: 1400 VGWDVKQVMALFEESSSDIFLTLKKRP 1426
G+ +Q + + + + LTL +R
Sbjct: 67 QGFTNQQAVEVLRHTGQTVLLTLMRRG 93
>3k1r_B Usher syndrome type-1G protein; protein-protein complex,
alternative splicing, coiled coil, deafness, hearing,
non-syndromic deafness, polymorphism; 2.30A {Homo
sapiens}
Length = 74
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 11 PDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDH 70
+ +L L + + ++ + L+ DL + +G +E IL AV
Sbjct: 2 TSPLETFLASLHME--DFAALLRQEKIDLEALMLCSDLDLRSISV-PLGPREKILGAVRR 58
Query: 71 LRN 73
R
Sbjct: 59 RRQ 61
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 1152 PDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDH 1211
+ +L L + + ++ + L+ DL + +G +E IL AV
Sbjct: 2 TSPLETFLASLHME--DFAALLRQEKIDLEALMLCSDLDLRSISV-PLGPREKILGAVRR 58
Query: 1212 LRN 1214
R
Sbjct: 59 RRQ 61
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 206 TLKKRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 256
TL+K + GF I + + + +S A +G + GD I +N
Sbjct: 9 TLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGL 67
Query: 257 TVVGWDVKQVMALFEESSSDIFLT 280
V G ++++ + + S + + L
Sbjct: 68 NVEGIRHREIVDIIKASGNVLRLE 91
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 1347 TLKKRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 1397
TL+K + GF I + + + +S A +G + GD I +N
Sbjct: 9 TLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGL 67
Query: 1398 TVVGWDVKQVMALFEESSSDIFLT 1421
V G ++++ + + S + + L
Sbjct: 68 NVEGIRHREIVDIIKASGNVLRLE 91
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 41.6 bits (98), Expect = 2e-04
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
TL++ P LGF I+ + H + + A + G+++ GD+I+ +N Q++ G
Sbjct: 30 TLERGPDG-LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEG 88
Query: 261 WDVKQVMALFEESSSDIFLTLKKRP 285
++ +A+ + + + L +
Sbjct: 89 VTHEEAVAILKRTKGTVTLMVLSSD 113
Score = 41.6 bits (98), Expect = 2e-04
Identities = 18/85 (21%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ-----IGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
TL++ P LGF I+ + H + + A + G+++ GD+I+ +N Q++ G
Sbjct: 30 TLERGPDG-LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEG 88
Query: 1402 WDVKQVMALFEESSSDIFLTLKKRP 1426
++ +A+ + + + L +
Sbjct: 89 VTHEEAVAILKRTKGTVTLMVLSSD 113
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 42.0 bits (99), Expect = 3e-04
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 209 KRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
K+ GF II + Q+ + + A Q GK+E GD IV IN V+G
Sbjct: 26 KKSNMGFGFTIIGGDEPDEFL-QVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84
Query: 266 VMALFEESSSDIFLTL 281
V+ LF+ + L
Sbjct: 85 VVKLFQSVPIGQSVNL 100
Score = 42.0 bits (99), Expect = 3e-04
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1350 KRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
K+ GF II + Q+ + + A Q GK+E GD IV IN V+G
Sbjct: 26 KKSNMGFGFTIIGGDEPDEFL-QVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84
Query: 1407 VMALFEESSSDIFLTL 1422
V+ LF+ + L
Sbjct: 85 VVKLFQSVPIGQSVNL 100
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 41.1 bits (97), Expect = 3e-04
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 206 TLKKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
L + G + + + + + A + G++E GD ++ IN ++ G
Sbjct: 16 ELVRGYAG-FGLTLGGGRDVAGDTPLA-VRGLLKDGPAQRCGRLEVGDLVLHINGESTQG 73
Query: 261 WDVKQVMALFEESSSDIFLTLKKRP 285
Q + + L +++
Sbjct: 74 LTHAQAVERIRAGGPQLHLVIRRPL 98
Score = 41.1 bits (97), Expect = 3e-04
Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 1347 TLKKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
L + G + + + + + A + G++E GD ++ IN ++ G
Sbjct: 16 ELVRGYAG-FGLTLGGGRDVAGDTPLA-VRGLLKDGPAQRCGRLEVGDLVLHINGESTQG 73
Query: 1402 WDVKQVMALFEESSSDIFLTLKKRP 1426
Q + + L +++
Sbjct: 74 LTHAQAVERIRAGGPQLHLVIRRPL 98
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 42.0 bits (99), Expect = 3e-04
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 181 SELADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCII----PSFHGIHQIGDIKCNS 236
D+ IR+ + L + ++L ++ LG + S I + I
Sbjct: 8 DAFTDQKIRQRYADLPGELHIIEL----EKDKNGLGLSLAGNKDRSRMSI-FVVGINPEG 62
Query: 237 TAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
A G++ GDE+++IN Q + G + A+ + + S + L +
Sbjct: 63 PAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNE 111
Score = 42.0 bits (99), Expect = 3e-04
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 1322 SELADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCII----PSFHGIHQIGDIKCNS 1377
D+ IR+ + L + ++L ++ LG + S I + I
Sbjct: 8 DAFTDQKIRQRYADLPGELHIIEL----EKDKNGLGLSLAGNKDRSRMSI-FVVGINPEG 62
Query: 1378 TAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
A G++ GDE+++IN Q + G + A+ + + S + L +
Sbjct: 63 PAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNE 111
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR
{Saccharomyces cerevisiae} PDB: 2ese_A
Length = 101
Score = 41.1 bits (96), Expect = 3e-04
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 12 DQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHL 71
+ WLK L +H+Y ++ L+ L + LE G+ +G + +L+A +
Sbjct: 32 KNIPMWLKSL--RLHKYSDALSGTPW--IELIYLDDETLEKKGVLALGARRKLLKAFGIV 87
Query: 72 R 72
Sbjct: 88 I 88
Score = 41.1 bits (96), Expect = 3e-04
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 1153 DQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIILEAVDHL 1212
+ WLK L +H+Y ++ L+ L + LE G+ +G + +L+A +
Sbjct: 32 KNIPMWLKSL--RLHKYSDALSGTPW--IELIYLDDETLEKKGVLALGARRKLLKAFGIV 87
Query: 1213 R 1213
Sbjct: 88 I 88
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis,
protein regulation, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 84
Score = 40.7 bits (95), Expect = 3e-04
Identities = 9/68 (13%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 5 NVADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEII 64
+++ ++V+ L+ + +S + F+ ++G L+ L + L + I
Sbjct: 14 DLSGLSIEEVSKSLRFIGLS-EDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKI 72
Query: 65 LEAVDHLR 72
++ ++
Sbjct: 73 MQFINGSG 80
Score = 39.2 bits (91), Expect = 0.001
Identities = 9/67 (13%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 1147 INNWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQEIIL 1206
++ ++V+ L+ + +S + F+ ++G L+ L + L + I+
Sbjct: 15 LSGLSIEEVSKSLRFIGLS-EDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIM 73
Query: 1207 EAVDHLR 1213
+ ++
Sbjct: 74 QFINGSG 80
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 41.1 bits (97), Expect = 3e-04
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 206 TLKKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDV 263
+ + LGF I+ GI I I A SG++ GD+I+ +N +
Sbjct: 16 VIHRGSTG-LGFNIVGGEXGEGIF-ISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 73
Query: 264 KQVMALFEESSSDIFLTLKKRP 285
+Q + + + + + +P
Sbjct: 74 EQAAIALKNAGQTVTIIAQYKP 95
Score = 41.1 bits (97), Expect = 3e-04
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 1347 TLKKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDV 1404
+ + LGF I+ GI I I A SG++ GD+I+ +N +
Sbjct: 16 VIHRGSTG-LGFNIVGGEXGEGIF-ISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 73
Query: 1405 KQVMALFEESSSDIFLTLKKRP 1426
+Q + + + + + +P
Sbjct: 74 EQAAIALKNAGQTVTIIAQYKP 95
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGD-------IKCNSTAYQSGKIECGDEIVQINYQTV 258
L + P LGF I+ + D IK N A G+++ GD+I+ +N Q +
Sbjct: 12 NLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 259 VGWDVKQVMALFEESSSDIFLTLKKRP 285
+ + LF + + L ++ R
Sbjct: 71 KNLLHQDAVDLFRNAGYAVSLRVQHRL 97
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGD-------IKCNSTAYQSGKIECGDEIVQINYQTV 1399
L + P LGF I+ + D IK N A G+++ GD+I+ +N Q +
Sbjct: 12 NLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 1400 VGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ + LF + + L ++ R
Sbjct: 71 KNLLHQDAVDLFRNAGYAVSLRVQHRL 97
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 40.4 bits (95), Expect = 3e-04
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
T+ + GF I ++ + A ++G ++ D ++Q+N + V W +
Sbjct: 8 TIPRGKDG-FGFTI--CCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVE 63
Query: 266 VMALFEESSSDIFLTLKKRP 285
+ S+I L + +
Sbjct: 64 LAHEIRSCPSEIILLVWRMV 83
Score = 40.4 bits (95), Expect = 3e-04
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
T+ + GF I ++ + A ++G ++ D ++Q+N + V W +
Sbjct: 8 TIPRGKDG-FGFTI--CCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVE 63
Query: 1407 VMALFEESSSDIFLTLKKRP 1426
+ S+I L + +
Sbjct: 64 LAHEIRSCPSEIILLVWRMV 83
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 41.2 bits (97), Expect = 4e-04
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 206 TLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
LKK LGF I I + +I A Q G+++ GD ++++N +V
Sbjct: 35 QLKKGTEG-LGFSITSRDVTIGGSAPI-YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLV 92
Query: 260 GWDVKQVMALFEESSSDIFLTL 281
G ++V++L + + ++L
Sbjct: 93 GKSQEEVVSLLRSTKMEGTVSL 114
Score = 41.2 bits (97), Expect = 4e-04
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 1347 TLKKRPGEHLGFCII------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
LKK LGF I I + +I A Q G+++ GD ++++N +V
Sbjct: 35 QLKKGTEG-LGFSITSRDVTIGGSAPI-YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLV 92
Query: 1401 GWDVKQVMALFEESSSDIFLTL 1422
G ++V++L + + ++L
Sbjct: 93 GKSQEEVVSLLRSTKMEGTVSL 114
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 40.4 bits (95), Expect = 4e-04
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 201 SLDLATLKKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTV 258
S+ + + GF ++ F I + S A + + GD I I+ +
Sbjct: 1 SMTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENT 59
Query: 259 VGWDVKQVMALFEESSSDIFLTLKKR 284
+ + + ++ LT+ +
Sbjct: 60 SNMTHLEAQNRIKGCTDNLTLTVARS 85
Score = 40.4 bits (95), Expect = 4e-04
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 1342 SLDLATLKKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTV 1399
S+ + + GF ++ F I + S A + + GD I I+ +
Sbjct: 1 SMTTQQIDLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENT 59
Query: 1400 VGWDVKQVMALFEESSSDIFLTLKKR 1425
+ + + ++ LT+ +
Sbjct: 60 SNMTHLEAQNRIKGCTDNLTLTVARS 85
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 44.5 bits (104), Expect = 4e-04
Identities = 25/192 (13%), Positives = 57/192 (29%), Gaps = 4/192 (2%)
Query: 95 HSLHRELWNYSSPVVSTQTLSDVATIIKAVKPLVCWLDRPPFSGQLAFIDKKAELLRLSL 154
+ ++ +S + D +K +V P + L+ D A +
Sbjct: 203 LQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLS--DSYAPPDITTS 260
Query: 155 EMAFSGQRGKFADHPIENIRNSAKGLSELADEMIREIHDPLLLQPSSLDLATLKKRPGEH 214
+ + + + S + + P + +
Sbjct: 261 YSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHR-GSTG 319
Query: 215 LGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES 273
LGF I+ I I A SG++ GD+I+ +N + +Q + +
Sbjct: 320 LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 379
Query: 274 SSDIFLTLKKRP 285
+ + + +P
Sbjct: 380 GQTVTIIAQYKP 391
Score = 44.5 bits (104), Expect = 4e-04
Identities = 25/192 (13%), Positives = 57/192 (29%), Gaps = 4/192 (2%)
Query: 1236 HSLHRELWNYSSPVVSTQTLSDVATIIKAVKPLVCWLDRPPFSGQLAFIDKKAELLRLSL 1295
+ ++ +S + D +K +V P + L+ D A +
Sbjct: 203 LQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLS--DSYAPPDITTS 260
Query: 1296 EMAFSGQRGKFADHPIENIRNSAKGLSELADEMIREIHDPLLLQPSSLDLATLKKRPGEH 1355
+ + + + S + + P + +
Sbjct: 261 YSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHR-GSTG 319
Query: 1356 LGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEES 1414
LGF I+ I I A SG++ GD+I+ +N + +Q + +
Sbjct: 320 LGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 379
Query: 1415 SSDIFLTLKKRP 1426
+ + + +P
Sbjct: 380 GQTVTIIAQYKP 391
Score = 43.4 bits (101), Expect = 0.001
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 209 KRPGEHLGFCIIPSFHGIHQ-------IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
+R LGF I H I I A Q G++ D I+ +N V
Sbjct: 66 ERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 125
Query: 262 DVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMK 297
+ +E+ S + L + +R ++ + +I +
Sbjct: 126 THSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLI 161
Score = 43.4 bits (101), Expect = 0.001
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 1350 KRPGEHLGFCIIPSFHGIHQ-------IGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
+R LGF I H I I A Q G++ D I+ +N V
Sbjct: 66 ERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 125
Query: 1403 DVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMK 1438
+ +E+ S + L + +R ++ + +I +
Sbjct: 126 THSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLI 161
Score = 33.3 bits (75), Expect = 1.1
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 209 KRPGEHLGFCIIPSFHGIH-------QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
+ + LGF I H + I A++ G+++ GD+I+ +N +
Sbjct: 161 IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDV 220
Query: 262 DVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQVSYRWFLDDKITPPR 321
+ +A + + ++L + K S+ + T
Sbjct: 221 MHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYP 280
Query: 322 ISH 324
+
Sbjct: 281 TAM 283
Score = 33.3 bits (75), Expect = 1.1
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 7/123 (5%)
Query: 1350 KRPGEHLGFCIIPSFHGIH-------QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
+ + LGF I H + I A++ G+++ GD+I+ +N +
Sbjct: 161 IKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDV 220
Query: 1403 DVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQVSYRWFLDDKITPPR 1462
+ +A + + ++L + K S+ + T
Sbjct: 221 MHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYP 280
Query: 1463 ISH 1465
+
Sbjct: 281 TAM 283
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 41.3 bits (97), Expect = 5e-04
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L+K GF ++ + QI + + A GK+E GD IV +N V+G
Sbjct: 23 KLRKSSRG-FGFTVVGGDEPDEFL-QIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 80
Query: 263 VKQVMALFEESSSDIFLTLK 282
QV+ +F+ + L+
Sbjct: 81 HAQVVKIFQSIPIGASVDLE 100
Score = 41.3 bits (97), Expect = 5e-04
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L+K GF ++ + QI + + A GK+E GD IV +N V+G
Sbjct: 23 KLRKSSRG-FGFTVVGGDEPDEFL-QIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT 80
Query: 1404 VKQVMALFEESSSDIFLTLK 1423
QV+ +F+ + L+
Sbjct: 81 HAQVVKIFQSIPIGASVDLE 100
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 40.4 bits (95), Expect = 5e-04
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
++K GF I ++ + + + A ++G++ GD+I++IN ++
Sbjct: 16 DMEKGAKG-FGFSIRGGREYKMDLY-VLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
+ + L + + L LK+
Sbjct: 74 HARAIELIKSGGRRVRLLLKRGT 96
Score = 40.4 bits (95), Expect = 5e-04
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
++K GF I ++ + + + A ++G++ GD+I++IN ++
Sbjct: 16 DMEKGAKG-FGFSIRGGREYKMDLY-VLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
+ + L + + L LK+
Sbjct: 74 HARAIELIKSGGRRVRLLLKRGT 96
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 40.4 bits (95), Expect = 6e-04
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDV 263
L++ GF I+ I G + +A + G++ GDE+V ++ V G
Sbjct: 14 HLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
Query: 264 KQVMALFEESSSDIFLTLK 282
+ V+ L ++ + + L
Sbjct: 73 RYVIDLMHHAARNGQVNLT 91
Score = 40.4 bits (95), Expect = 6e-04
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDV 1404
L++ GF I+ I G + +A + G++ GDE+V ++ V G
Sbjct: 14 HLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
Query: 1405 KQVMALFEESSSDIFLTLK 1423
+ V+ L ++ + + L
Sbjct: 73 RYVIDLMHHAARNGQVNLT 91
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 40.4 bits (95), Expect = 6e-04
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 11/98 (11%)
Query: 198 QPSSLDLATLKKRPGEHLGFCIIPSFHGIHQ----------IGDIKCNSTAYQSGKIECG 247
+P + L K LG + F + + A G+I G
Sbjct: 6 KPGDIFEVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKG 64
Query: 248 DEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
D ++ +N ++ G KQ + + + L L+K
Sbjct: 65 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 102
Score = 40.4 bits (95), Expect = 6e-04
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 11/98 (11%)
Query: 1339 QPSSLDLATLKKRPGEHLGFCIIPSFHGIHQ----------IGDIKCNSTAYQSGKIECG 1388
+P + L K LG + F + + A G+I G
Sbjct: 6 KPGDIFEVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKG 64
Query: 1389 DEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
D ++ +N ++ G KQ + + + L L+K
Sbjct: 65 DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQ 102
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 40.1 bits (94), Expect = 9e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 209 KRPGEHLGFCIIPSFHGIHQIG----DIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
R LGF I+ G G I A SG++ GD+I+ +N + +
Sbjct: 21 HRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 77
Query: 265 QVMALFEESSSDIFLTLKKRP 285
Q + + + + + +P
Sbjct: 78 QAAIALKNAGQTVTIIAQYKP 98
Score = 40.1 bits (94), Expect = 9e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 1350 KRPGEHLGFCIIPSFHGIHQIG----DIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
R LGF I+ G G I A SG++ GD+I+ +N + +
Sbjct: 21 HRGSTGLGFNIV---GGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 77
Query: 1406 QVMALFEESSSDIFLTLKKRP 1426
Q + + + + + +P
Sbjct: 78 QAAIALKNAGQTVTIIAQYKP 98
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 41.1 bits (96), Expect = 0.001
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQ--------IGDIKCNSTAYQSGKIECGDEIVQINYQT 257
L+K LG II G + + A++ G+I+ D +V+++ +
Sbjct: 85 ELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 143
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKK 283
+VG ++ + + + +
Sbjct: 144 LVGVTQSFAASVLRNTKGRVRFMIGR 169
Score = 41.1 bits (96), Expect = 0.001
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQ--------IGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
L+K LG II G + + A++ G+I+ D +V+++ +
Sbjct: 85 ELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 143
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKK 1424
+VG ++ + + + +
Sbjct: 144 LVGVTQSFAASVLRNTKGRVRFMIGR 169
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 39.8 bits (93), Expect = 0.001
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 206 TLKKRPGEHLGFCII--------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 251
L+K+ E GF + P+F + + + A+++G + GD ++
Sbjct: 12 LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLI 70
Query: 252 QINYQTVVGWDVKQVMALFEESSSDIFLT 280
++N Q VV +QV+ + + + + +
Sbjct: 71 EVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99
Score = 39.8 bits (93), Expect = 0.001
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 1347 TLKKRPGEHLGFCII--------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 1392
L+K+ E GF + P+F + + + A+++G + GD ++
Sbjct: 12 LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLI 70
Query: 1393 QINYQTVVGWDVKQVMALFEESSSDIFLT 1421
++N Q VV +QV+ + + + + +
Sbjct: 71 EVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 209 KRPGEHLGFCIIPSFHGIHQIG----DIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
+ LGF I+ G G I A SG++ GD I+ +N + +
Sbjct: 22 HKGSTGLGFNIV---GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 78
Query: 265 QVMALFEESSSDIFLTLKKRP 285
Q A + + + + + RP
Sbjct: 79 QAAAALKRAGQSVTIVAQYRP 99
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 1350 KRPGEHLGFCIIPSFHGIHQIG----DIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
+ LGF I+ G G I A SG++ GD I+ +N + +
Sbjct: 22 HKGSTGLGFNIV---GGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHE 78
Query: 1406 QVMALFEESSSDIFLTLKKRP 1426
Q A + + + + + RP
Sbjct: 79 QAAAALKRAGQSVTIVAQYRP 99
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 40.2 bits (93), Expect = 0.001
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 16/112 (14%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHL---------FIYLPGFTV 763
+G L+ D +W R + I D + T + L + V
Sbjct: 15 QGELYMWDSI---DQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71
Query: 764 APAVEVKSRK-YALKIYHTGT---TFYLSADSQDEFSSWLGCLSQATIAHDR 811
A + K++K + + + D +E W + + T D
Sbjct: 72 VKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKIDT 123
Score = 40.2 bits (93), Expect = 0.001
Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 16/112 (14%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHL---------FIYLPGFTV 1909
+G L+ D +W R + I D + T + L + V
Sbjct: 15 QGELYMWDSI---DQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71
Query: 1910 APAVEVKSRK-YALKIYHTGT---TFYLSADSQDEFSSWLGCLSQATIAHDR 1957
A + K++K + + + D +E W + + T D
Sbjct: 72 VKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKIDT 123
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 39.2 bits (92), Expect = 0.001
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 201 SLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 257
S+ ++ GF + + I +K A Q+ + GD ++ I+
Sbjct: 1 SMSNYSVSLVGPAPWGFRLQGGKDFNMPL-TISSLKDGGKAAQAN-VRIGDVVLSIDGIN 58
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKR 284
G + + + + +TL++
Sbjct: 59 AQGMTHLEAQNKIKGCTGSLNMTLQRE 85
Score = 39.2 bits (92), Expect = 0.001
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 1342 SLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
S+ ++ GF + + I +K A Q+ + GD ++ I+
Sbjct: 1 SMSNYSVSLVGPAPWGFRLQGGKDFNMPL-TISSLKDGGKAAQAN-VRIGDVVLSIDGIN 58
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKR 1425
G + + + + +TL++
Sbjct: 59 AQGMTHLEAQNKIKGCTGSLNMTLQRE 85
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 39.7 bits (93), Expect = 0.001
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 193 DPLLLQPSSLDLATLKKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKI 244
+ L Q ++ L K P LGF I P + I+ + I A + G++
Sbjct: 16 ENLYFQSMTVVEIKLFKGPKG-LGFSIAGGVGNQHIPGDNSIY-VTKIIDGGAAQKDGRL 73
Query: 245 ECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ GD ++ +N ++ ++ +A+ + +S ++L + K
Sbjct: 74 QVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114
Score = 39.7 bits (93), Expect = 0.001
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 1334 DPLLLQPSSLDLATLKKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKI 1385
+ L Q ++ L K P LGF I P + I+ + I A + G++
Sbjct: 16 ENLYFQSMTVVEIKLFKGPKG-LGFSIAGGVGNQHIPGDNSIY-VTKIIDGGAAQKDGRL 73
Query: 1386 ECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ GD ++ +N ++ ++ +A+ + +S ++L + K
Sbjct: 74 QVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 39.3 bits (92), Expect = 0.001
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 206 TLKKRPGEHLGFCII-----PSFHGIHQ---IGDIKCNSTAYQSGKIECGDEIVQINYQT 257
TL + PG G I P F I D+ A G+++ D + +N +
Sbjct: 12 TLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVS 69
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKR 284
+ + + +S + +T++++
Sbjct: 70 MDNVEHAFAVQQLRKSGKNAKITIRRK 96
Score = 39.3 bits (92), Expect = 0.001
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 1347 TLKKRPGEHLGFCII-----PSFHGIHQ---IGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
TL + PG G I P F I D+ A G+++ D + +N +
Sbjct: 12 TLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVS 69
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKR 1425
+ + + +S + +T++++
Sbjct: 70 MDNVEHAFAVQQLRKSGKNAKITIRRK 96
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 206 TLKKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 257
L K P LGF I P + I+ I I A + G+++ GD ++ +N
Sbjct: 8 NLLKGPKG-LGFSIAGGIGNQHIPGDNSIY-ITKIIEGGAAQKDGRLQIGDRLLAVNNTN 65
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKR 284
+ ++ +A + +S ++L + K
Sbjct: 66 LQDVRHEEAVASLKNTSDMVYLKVAKP 92
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 1347 TLKKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
L K P LGF I P + I+ I I A + G+++ GD ++ +N
Sbjct: 8 NLLKGPKG-LGFSIAGGIGNQHIPGDNSIY-ITKIIEGGAAQKDGRLQIGDRLLAVNNTN 65
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKR 1425
+ ++ +A + +S ++L + K
Sbjct: 66 LQDVRHEEAVASLKNTSDMVYLKVAKP 92
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 39.3 bits (92), Expect = 0.001
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 204 LATLKKRPGEHLGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L L K G GF + + DI A ++G + D ++++N + V
Sbjct: 11 LCYLVKEGGS-YGFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDAS 68
Query: 263 VKQVMALFEESSSDIFLTLKKRPCH 287
++V+ ++S S + L +
Sbjct: 69 HEEVVEKVKKSGSRVMFLLVDKETD 93
Score = 39.3 bits (92), Expect = 0.001
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 1345 LATLKKRPGEHLGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L L K G GF + + DI A ++G + D ++++N + V
Sbjct: 11 LCYLVKEGGS-YGFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDAS 68
Query: 1404 VKQVMALFEESSSDIFLTLKKRPCH 1428
++V+ ++S S + L +
Sbjct: 69 HEEVVEKVKKSGSRVMFLLVDKETD 93
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 38.8 bits (91), Expect = 0.001
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 204 LATLKKRPGEHLGFCI--IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
L L+K P GF + S G + I + S A +SG + D ++++N Q V G
Sbjct: 7 LCHLRKGPQG-YGFNLHSDKSRPGQY-IRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGL 63
Query: 262 DVKQVMALFEESSSDIFLTL 281
+V+A + + L +
Sbjct: 64 RHAEVVASIKAREDEARLLV 83
Score = 38.8 bits (91), Expect = 0.001
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 1345 LATLKKRPGEHLGFCI--IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
L L+K P GF + S G + I + S A +SG + D ++++N Q V G
Sbjct: 7 LCHLRKGPQG-YGFNLHSDKSRPGQY-IRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGL 63
Query: 1403 DVKQVMALFEESSSDIFLTL 1422
+V+A + + L +
Sbjct: 64 RHAEVVASIKAREDEARLLV 83
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 209 KRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
R LGF I GI + I A+++G ++ GD ++ IN V
Sbjct: 14 ARSERGLGFSIAGGKGSTPYRAGDAGIF-VSRIAEGGAAHRAGTLQVGDRVLSINGVDVT 72
Query: 260 GWDVKQVMALFEESSSDIFLTLKKRP 285
++L +S I L L++
Sbjct: 73 EARHDHAVSLLTAASPTIALLLEREA 98
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 1350 KRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
R LGF I GI + I A+++G ++ GD ++ IN V
Sbjct: 14 ARSERGLGFSIAGGKGSTPYRAGDAGIF-VSRIAEGGAAHRAGTLQVGDRVLSINGVDVT 72
Query: 1401 GWDVKQVMALFEESSSDIFLTLKKRP 1426
++L +S I L L++
Sbjct: 73 EARHDHAVSLLTAASPTIALLLEREA 98
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 206 TLKKRPGEHLGFCII------PSFHGIHQIG----DIKCNSTAYQSGKIECGDEIVQINY 255
L + G LGF II + G G I + A + G ++ D I+++N
Sbjct: 13 VLHRDSG-SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNG 71
Query: 256 QTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ + Q + F+ + I + + +R
Sbjct: 72 RDLSRATHDQAVEAFKTAKEPIVVQVLRRT 101
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 1347 TLKKRPGEHLGFCII------PSFHGIHQIG----DIKCNSTAYQSGKIECGDEIVQINY 1396
L + G LGF II + G G I + A + G ++ D I+++N
Sbjct: 13 VLHRDSG-SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNG 71
Query: 1397 QTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ + Q + F+ + I + + +R
Sbjct: 72 RDLSRATHDQAVEAFKTAKEPIVVQVLRRT 101
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 38.8 bits (91), Expect = 0.002
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 204 LATLKKRPGEHLGFCI--IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
L L K GF + I G I +++ A +G +E D I+++N V+
Sbjct: 6 LCRLAKGENG-YGFHLNAIRGLPGSF-IKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDE 62
Query: 262 DVKQVMALFEESSSDIFLTLKKRPCHSKI 290
++V+ + S ++ L + + +
Sbjct: 63 PYEKVVDRIQSSGKNVTLLVCGKKAQDTV 91
Score = 38.8 bits (91), Expect = 0.002
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 1345 LATLKKRPGEHLGFCI--IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
L L K GF + I G I +++ A +G +E D I+++N V+
Sbjct: 6 LCRLAKGENG-YGFHLNAIRGLPGSF-IKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDE 62
Query: 1403 DVKQVMALFEESSSDIFLTLKKRPCHSKI 1431
++V+ + S ++ L + + +
Sbjct: 63 PYEKVVDRIQSSGKNVTLLVCGKKAQDTV 91
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 39.3 bits (92), Expect = 0.002
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGD-------IKCNSTAYQSGKIECGDEIVQINYQTV 258
L + P LGF I+ + D IK N A G+++ GD+I+ +N Q +
Sbjct: 22 NLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 80
Query: 259 VGWDVKQVMALFEESSSDIFLTLKKRP 285
+ + LF + + L ++ R
Sbjct: 81 KNLLHQDAVDLFRNAGYAVSLRVQHRL 107
Score = 39.3 bits (92), Expect = 0.002
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGD-------IKCNSTAYQSGKIECGDEIVQINYQTV 1399
L + P LGF I+ + D IK N A G+++ GD+I+ +N Q +
Sbjct: 22 NLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 80
Query: 1400 VGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ + LF + + L ++ R
Sbjct: 81 KNLLHQDAVDLFRNAGYAVSLRVQHRL 107
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 204 LATLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L T+KK P GF + I + +S A SG + D IV++N + G
Sbjct: 12 LCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 263 VKQVMALFEESSSDIFLTLKKRPCH 287
V++ + L + R
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETD 94
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 1345 LATLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L T+KK P GF + I + +S A SG + D IV++N + G
Sbjct: 12 LCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 1404 VKQVMALFEESSSDIFLTLKKRPCH 1428
V++ + L + R
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRETD 94
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 206 TLKKRPGEHLGFCII-----PSFHGIHQ---IGDIKCNSTAYQSGKIECGDEIVQINYQT 257
TL+K G + P F I D+ A G ++ D +V +N
Sbjct: 19 TLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTP 76
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPS 303
+ + +S + +K+ ++ + P PS
Sbjct: 77 MEDVLHSFAVQQLRKSGKIAAIVVKRPR-------KVQVAPLSGPS 115
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 1347 TLKKRPGEHLGFCII-----PSFHGIHQ---IGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
TL+K G + P F I D+ A G ++ D +V +N
Sbjct: 19 TLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTP 76
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPS 1444
+ + +S + +K+ ++ + P PS
Sbjct: 77 MEDVLHSFAVQQLRKSGKIAAIVVKRPR-------KVQVAPLSGPS 115
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 206 TLKKRPGEHLGFCII----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
+ K LG I+ I I ++ A + G++ GD+I+++N +
Sbjct: 9 EISKGRTG-LGLSIVGGSDTLLGAII-IHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 262 DVKQVMALFEESSSDIFLTLKKRPCHSK 289
+ + + ++ + LTL + K
Sbjct: 67 THDEAINVLRQTPQRVRLTLYRDEAPYK 94
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 1347 TLKKRPGEHLGFCII----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
+ K LG I+ I I ++ A + G++ GD+I+++N +
Sbjct: 9 EISKGRTG-LGLSIVGGSDTLLGAII-IHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 1403 DVKQVMALFEESSSDIFLTLKKRPCHSK 1430
+ + + ++ + LTL + K
Sbjct: 67 THDEAINVLRQTPQRVRLTLYRDEAPYK 94
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 38.5 bits (90), Expect = 0.002
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 209 KRPGEHLGFCI---------IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
G+ GF + + H + ++ S A ++G + GD I IN ++V+
Sbjct: 9 HSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVL 67
Query: 260 GWDVKQVMALFEESSSDIFLTL 281
G V+ L +S + I L
Sbjct: 68 GLVHMDVVELLLKSGNKISLRT 89
Score = 38.5 bits (90), Expect = 0.002
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 1350 KRPGEHLGFCI---------IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
G+ GF + + H + ++ S A ++G + GD I IN ++V+
Sbjct: 9 HSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVL 67
Query: 1401 GWDVKQVMALFEESSSDIFLTL 1422
G V+ L +S + I L
Sbjct: 68 GLVHMDVVELLLKSGNKISLRT 89
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide exchange
factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Length = 159
Score = 39.9 bits (93), Expect = 0.002
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 1089 TIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVY-ELFIKYSL-NPFYKINTP 1146
+ K+ V + T +G+ F+++ D ++ + +Y +++KY N +
Sbjct: 71 STGKYR---VHTYCTASGLWFVLLSD-FKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFA 126
Query: 1147 INNWKPD 1153
N +
Sbjct: 127 ENENEMR 133
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 39.9 bits (92), Expect = 0.003
Identities = 8/126 (6%), Positives = 30/126 (23%), Gaps = 32/126 (25%)
Query: 713 EGWLFQR--DRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH----------------- 753
E +R +K ++ + + F++ + +
Sbjct: 6 ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET 65
Query: 754 -------------LFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLG 800
+ ++ Y ++ + Y+ + +++ W+
Sbjct: 66 VVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIH 125
Query: 801 CLSQAT 806
L
Sbjct: 126 QLKNVI 131
Score = 39.9 bits (92), Expect = 0.003
Identities = 8/126 (6%), Positives = 30/126 (23%), Gaps = 32/126 (25%)
Query: 1859 EGWLFQR--DRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH----------------- 1899
E +R +K ++ + + F++ + +
Sbjct: 6 ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET 65
Query: 1900 -------------LFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLSADSQDEFSSWLG 1946
+ ++ Y ++ + Y+ + +++ W+
Sbjct: 66 VVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIH 125
Query: 1947 CLSQAT 1952
L
Sbjct: 126 QLKNVI 131
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 38.5 bits (90), Expect = 0.003
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 206 TLKKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 257
L K P LGF I P + I+ + I A++ GK++ GD+++ +N +
Sbjct: 8 KLIKGPKG-LGFSIAGGVGNQHIPGDNSIY-VTKIIEGGAAHKDGKLQIGDKLLAVNSVS 65
Query: 258 VVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ ++ + + +S ++L + K
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYLKVAKPT 93
Score = 38.5 bits (90), Expect = 0.003
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 1347 TLKKRPGEHLGFCII--------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQT 1398
L K P LGF I P + I+ + I A++ GK++ GD+++ +N +
Sbjct: 8 KLIKGPKG-LGFSIAGGVGNQHIPGDNSIY-VTKIIEGGAAHKDGKLQIGDKLLAVNSVS 65
Query: 1399 VVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ ++ + + +S ++L + K
Sbjct: 66 LEEVTHEEAVTALKNTSDFVYLKVAKPT 93
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 38.3 bits (89), Expect = 0.003
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 206 TLKKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQS-GKIECGDEIVQINYQTVVGWD 262
+K GF + + + + A ++ GD++V IN + +
Sbjct: 22 RMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 81
Query: 263 VKQVMALFEESSSDIF--LTLKKRP 285
QV+ + S L L RP
Sbjct: 82 HDQVVLFIKASCERHSGELMLLVRP 106
Score = 38.3 bits (89), Expect = 0.003
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 1347 TLKKRPGEHLGFCII--PSFHGIHQIGDIKCNSTAYQS-GKIECGDEIVQINYQTVVGWD 1403
+K GF + + + + A ++ GD++V IN + +
Sbjct: 22 RMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 81
Query: 1404 VKQVMALFEESSSDIF--LTLKKRP 1426
QV+ + S L L RP
Sbjct: 82 HDQVVLFIKASCERHSGELMLLVRP 106
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 37.7 bits (88), Expect = 0.003
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 200 SSLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 256
S T+ GF I I + + A + + GD IV IN Q
Sbjct: 3 SGSSGLTVDVAGPAPWGFRISGGRDFHTPI-IVTKVTERGKAEAAD-LRPGDIIVAINGQ 60
Query: 257 TVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 288
+ + + +S+S + L L + S
Sbjct: 61 SAENMLHAEAQSKIRQSASPLRLQLDRSSGPS 92
Score = 37.7 bits (88), Expect = 0.003
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 1341 SSLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 1397
S T+ GF I I + + A + + GD IV IN Q
Sbjct: 3 SGSSGLTVDVAGPAPWGFRISGGRDFHTPI-IVTKVTERGKAEAAD-LRPGDIIVAINGQ 60
Query: 1398 TVVGWDVKQVMALFEESSSDIFLTLKKRPCHS 1429
+ + + +S+S + L L + S
Sbjct: 61 SAENMLHAEAQSKIRQSASPLRLQLDRSSGPS 92
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 38.2 bits (89), Expect = 0.004
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
G+ LGF + + Q+ + + +A +G + GD IV I V +
Sbjct: 20 HFTVEEGD-LGFTL--RGNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSE 75
Query: 266 VMALFEESSSDIFLTLK 282
VM L + + + +K
Sbjct: 76 VMKLLKSFGGEE-VEMK 91
Score = 38.2 bits (89), Expect = 0.004
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
G+ LGF + + Q+ + + +A +G + GD IV I V +
Sbjct: 20 HFTVEEGD-LGFTL--RGNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSE 75
Query: 1407 VMALFEESSSDIFLTLK 1423
VM L + + + +K
Sbjct: 76 VMKLLKSFGGEE-VEMK 91
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 38.2 bits (89), Expect = 0.004
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 206 TLKKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
T+ K G LG I+ ++ I ++ Y+ G+++ GD++V IN ++++G
Sbjct: 20 TVTKETG--LGLKILGGINRNEGPLVY-IHEVIPGGDCYKDGRLKPGDQLVSINKESMIG 76
Query: 261 WDVKQVMALFEESSSDIFLTLKKRPCHSK 289
++ ++ + + S
Sbjct: 77 VSFEEAKSIITRAKLRSESPWEIAFIRSG 105
Score = 38.2 bits (89), Expect = 0.004
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 1347 TLKKRPGEHLGFCII-----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
T+ K G LG I+ ++ I ++ Y+ G+++ GD++V IN ++++G
Sbjct: 20 TVTKETG--LGLKILGGINRNEGPLVY-IHEVIPGGDCYKDGRLKPGDQLVSINKESMIG 76
Query: 1402 WDVKQVMALFEESSSDIFLTLKKRPCHSK 1430
++ ++ + + S
Sbjct: 77 VSFEEAKSIITRAKLRSESPWEIAFIRSG 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 0.005
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 394 EEESISS-PTSVRLYHPK--PRLPVQRRATI 421
E++++ S++LY P L ++ AT+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK--ATM 46
Score = 39.2 bits (90), Expect = 0.005
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 1535 EEESISS-PTSVRLYHPK--PRLPVQRRATI 1562
E++++ S++LY P L ++ AT+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK--ATM 46
Score = 34.5 bits (78), Expect = 0.14
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 746 DKDSTK---AHLFIYLPGFTVAPAVEVKS 771
+K + K A L +Y APA+ +K+
Sbjct: 18 EKQALKKLQASLKLYADD--SAPALAIKA 44
Score = 34.5 bits (78), Expect = 0.14
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 1892 DKDSTK---AHLFIYLPGFTVAPAVEVKS 1917
+K + K A L +Y APA+ +K+
Sbjct: 18 EKQALKKLQASLKLYADD--SAPALAIKA 44
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 38.3 bits (89), Expect = 0.005
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 204 LATLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L T+KK P GF + I + +S A SG + D IV++N + G
Sbjct: 12 LCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
V++ + L + R
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRE 92
Score = 38.3 bits (89), Expect = 0.005
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 1345 LATLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L T+KK P GF + I + +S A SG + D IV++N + G
Sbjct: 12 LCTMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQ 69
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
V++ + L + R
Sbjct: 70 HGDVVSAIRAGGDETKLLVVDRE 92
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 37.2 bits (87), Expect = 0.005
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
+ + GF + S + + S A G + GD+I+ +N V +
Sbjct: 7 EVARGRAG-YGFTL--SGQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHED 62
Query: 266 VMALFEESSSDIFLTL 281
V+ L + S + + +
Sbjct: 63 VVKLIGKCSGVLHMVI 78
Score = 37.2 bits (87), Expect = 0.005
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
+ + GF + S + + S A G + GD+I+ +N V +
Sbjct: 7 EVARGRAG-YGFTL--SGQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHED 62
Query: 1407 VMALFEESSSDIFLTL 1422
V+ L + S + + +
Sbjct: 63 VVKLIGKCSGVLHMVI 78
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 37.7 bits (88), Expect = 0.005
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 200 SSLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 256
SS + GF + I + I I S A + + GD I+ I+
Sbjct: 2 SSGSSGNVVLPGPAPWGFRLSGGIDFNQPL-VITRITPGSKAAAAN-LCPGDVILAIDGF 59
Query: 257 TVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ +S + L + +
Sbjct: 60 GTESMTHADAQDRIKAASYQLCLKIDRAE 88
Score = 37.7 bits (88), Expect = 0.005
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 1341 SSLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 1397
SS + GF + I + I I S A + + GD I+ I+
Sbjct: 2 SSGSSGNVVLPGPAPWGFRLSGGIDFNQPL-VITRITPGSKAAAAN-LCPGDVILAIDGF 59
Query: 1398 TVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ +S + L + +
Sbjct: 60 GTESMTHADAQDRIKAASYQLCLKIDRAE 88
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 37.7 bits (88), Expect = 0.005
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 206 TLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
+KK GF + I DI+ S A +G ++ D +V +N ++V D
Sbjct: 11 VIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHD 68
Query: 265 QVMALFEESSSDIFLTLKKRPCHS 288
V+ + + L + + S
Sbjct: 69 GVVEMIRKGGDQTTLLVLDKEAES 92
Score = 37.7 bits (88), Expect = 0.005
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 1347 TLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
+KK GF + I DI+ S A +G ++ D +V +N ++V D
Sbjct: 11 VIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHD 68
Query: 1406 QVMALFEESSSDIFLTLKKRPCHS 1429
V+ + + L + + S
Sbjct: 69 GVVEMIRKGGDQTTLLVLDKEAES 92
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 37.7 bits (88), Expect = 0.005
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 206 TLKKRPGEHLGFCII--------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 251
+ K GF + + + + + A ++G + GD I+
Sbjct: 11 RIVKSESG-YGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRIL 68
Query: 252 QINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKI 290
++N V G KQV+ L ++ LT+ SK+
Sbjct: 69 EVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESESKV 107
Score = 37.7 bits (88), Expect = 0.005
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 1347 TLKKRPGEHLGFCII--------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 1392
+ K GF + + + + + A ++G + GD I+
Sbjct: 11 RIVKSESG-YGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRIL 68
Query: 1393 QINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCHSKI 1431
++N V G KQV+ L ++ LT+ SK+
Sbjct: 69 EVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESESKV 107
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 40.2 bits (93), Expect = 0.005
Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 22/144 (15%)
Query: 676 LKPKHKATSPKVFRKKTNLLRGKRRNISVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFI 735
+ S + +T LL+ + S P+ +G+L ++ + W + +
Sbjct: 103 FPEQMVTWSQQSNGSQTQLLQNFLNSSSS-----PEIQGFLHVKELGKKS---WKKLYVC 154
Query: 736 IKGNHFYGFTDKDSTKAH---LFIYLPGFTVAPAVEVKSR-----KYALKIYHTGT---- 783
++ + Y T S L L + + + + + L I
Sbjct: 155 LRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNET 214
Query: 784 --TFYLSADSQDEFSSWLGCLSQA 805
L A+ + +SW+
Sbjct: 215 KELRLLCAEDEQTRTSWMTAFRLL 238
Score = 39.4 bits (91), Expect = 0.008
Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 17/110 (15%)
Query: 1856 PDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAH---LFIYLPGFTVAPA 1912
P+ +G+L ++ + W + + ++ + Y T S L L +
Sbjct: 132 PEIQGFLHVKELGKKS---WKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSL 188
Query: 1913 VEVKSR-----KYALKIYHTGT------TFYLSADSQDEFSSWLGCLSQA 1951
+ + + + L I L A+ + +SW+
Sbjct: 189 IAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLL 238
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 37.2 bits (87), Expect = 0.005
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 206 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
TL+ GF + + I + S A + + GD I IN ++
Sbjct: 13 TLRGPSP--WGFRLVGGRDFSAPL-TISRVHAGSKAALAA-LCPGDLIQAINGESTELMT 68
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
+ + + L++ P
Sbjct: 69 HLEAQNRIKGCHDHLTLSVSSGP 91
Score = 37.2 bits (87), Expect = 0.005
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 1347 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
TL+ GF + + I + S A + + GD I IN ++
Sbjct: 13 TLRGPSP--WGFRLVGGRDFSAPL-TISRVHAGSKAALAA-LCPGDLIQAINGESTELMT 68
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
+ + + L++ P
Sbjct: 69 HLEAQNRIKGCHDHLTLSVSSGP 91
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 37.8 bits (88), Expect = 0.007
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 209 KRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVM 267
++ E LG I+ GI+ + + S A+Q+G +E GD++++ N + +Q
Sbjct: 26 QKGSEPLGISIVSGEKGGIY-VSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQAR 83
Query: 268 ALFEESSSDIFLTLKKRPCHSKILGQ 293
+ + I + + P ++
Sbjct: 84 LIIGQQCDTITILAQYNPHVHQLSSH 109
Score = 37.8 bits (88), Expect = 0.007
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 1350 KRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVM 1408
++ E LG I+ GI+ + + S A+Q+G +E GD++++ N + +Q
Sbjct: 26 QKGSEPLGISIVSGEKGGIY-VSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQAR 83
Query: 1409 ALFEESSSDIFLTLKKRPCHSKILGQ 1434
+ + I + + P ++
Sbjct: 84 LIIGQQCDTITILAQYNPHVHQLSSH 109
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 36.9 bits (86), Expect = 0.008
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 209 KRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMA 268
++ GF + S I + ++ A ++G ++ GD I+++N V +V+
Sbjct: 15 QKDQHGFGFTV--SGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVK 71
Query: 269 LFEESSSDIFLTLKKRP 285
L +S + + LTL
Sbjct: 72 LI-KSGAYVALTLLGSS 87
Score = 36.9 bits (86), Expect = 0.008
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 1350 KRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMA 1409
++ GF + S I + ++ A ++G ++ GD I+++N V +V+
Sbjct: 15 QKDQHGFGFTV--SGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVK 71
Query: 1410 LFEESSSDIFLTLKKRP 1426
L +S + + LTL
Sbjct: 72 LI-KSGAYVALTLLGSS 87
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 37.5 bits (87), Expect = 0.008
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQS-GKIECGDEIVQINYQTVVGW 261
+K GF + + + + + A ++ GD++V IN + +
Sbjct: 20 RMKPDENGRFGFNVKGGYDQKMPV-IVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEH 78
Query: 262 DVKQVMALFEESSSDIFLTLK 282
QV+ + S L
Sbjct: 79 THDQVVLFIKASCERHSGELM 99
Score = 37.5 bits (87), Expect = 0.008
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQS-GKIECGDEIVQINYQTVVGW 1402
+K GF + + + + + A ++ GD++V IN + +
Sbjct: 20 RMKPDENGRFGFNVKGGYDQKMPV-IVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEH 78
Query: 1403 DVKQVMALFEESSSDIFLTLK 1423
QV+ + S L
Sbjct: 79 THDQVVLFIKASCERHSGELM 99
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 37.5 bits (87), Expect = 0.010
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTVVG 260
TL+K LGF + S HG + I + + QS ++ GDEI+Q+ + G
Sbjct: 34 TLEKMSA-GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQG 92
Query: 261 WDVKQVMALFEESSSD-IFLTLKKRPCHSK 289
+ + + + + ++++ SK
Sbjct: 93 LTRFEAWNIIKALPDGPVTIVIRRKSLQSK 122
Score = 37.5 bits (87), Expect = 0.010
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQI--GDIKCNSTAYQSGKIECGDEIVQINYQTVVG 1401
TL+K LGF + S HG + I + + QS ++ GDEI+Q+ + G
Sbjct: 34 TLEKMSA-GLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQG 92
Query: 1402 WDVKQVMALFEESSSD-IFLTLKKRPCHSK 1430
+ + + + + ++++ SK
Sbjct: 93 LTRFEAWNIIKALPDGPVTIVIRRKSLQSK 122
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 36.9 bits (86), Expect = 0.010
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 206 TLKKRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 256
T+ ++ G LG I GI I + A ++G + GD+++++N
Sbjct: 20 TILRQTG-GLGISIAGGKGSTPYKGDDEGIF-ISRVSEEGPAARAG-VRVGDKLLEVNGV 76
Query: 257 TVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ G + + + + + + + + +
Sbjct: 77 ALQGAEHHEAVEALRGAGTAVQMRVWRES 105
Score = 36.9 bits (86), Expect = 0.010
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 1347 TLKKRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 1397
T+ ++ G LG I GI I + A ++G + GD+++++N
Sbjct: 20 TILRQTG-GLGISIAGGKGSTPYKGDDEGIF-ISRVSEEGPAARAG-VRVGDKLLEVNGV 76
Query: 1398 TVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ G + + + + + + + + +
Sbjct: 77 ALQGAEHHEAVEALRGAGTAVQMRVWRES 105
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 39.0 bits (90), Expect = 0.012
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
T++K LG I + I I I A Q+ + GD I+ +N + +
Sbjct: 82 TVRKADAGGLGISIKGGRENKMPIL-ISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 140
Query: 263 VKQVMALFEESSSDIFLTLKKRPCHS 288
+ + +++ ++ L +K S
Sbjct: 141 HDEAVQALKKTGKEVVLEVKYMKEVS 166
Score = 39.0 bits (90), Expect = 0.012
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
T++K LG I + I I I A Q+ + GD I+ +N + +
Sbjct: 82 TVRKADAGGLGISIKGGRENKMPIL-ISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 140
Query: 1404 VKQVMALFEESSSDIFLTLKKRPCHS 1429
+ + +++ ++ L +K S
Sbjct: 141 HDEAVQALKKTGKEVVLEVKYMKEVS 166
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 36.2 bits (84), Expect = 0.012
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 204 LATLKKRPGEHLGFCI----IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 259
L+K P GF + + ++ A ++G ++ GD +V + ++V
Sbjct: 6 CLHLEKGPQG-FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVE 63
Query: 260 GWDVKQVMALFEESSSDIFLTL 281
G ++ ++ + S + LT+
Sbjct: 64 GLGHEETVSRIQGQGSCVSLTV 85
Score = 36.2 bits (84), Expect = 0.012
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 1345 LATLKKRPGEHLGFCI----IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVV 1400
L+K P GF + + ++ A ++G ++ GD +V + ++V
Sbjct: 6 CLHLEKGPQG-FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVE 63
Query: 1401 GWDVKQVMALFEESSSDIFLTL 1422
G ++ ++ + S + LT+
Sbjct: 64 GLGHEETVSRIQGQGSCVSLTV 85
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 39.4 bits (91), Expect = 0.013
Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 210 RPGEHLGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMA 268
R G+ +G + + GI + + +S A + G +E GD+I+++N ++ +
Sbjct: 16 RKGDSVGLRLAGGNDVGIF-VAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 73
Query: 269 LFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQ 306
+ +T+ + + +
Sbjct: 74 FLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 111
Score = 39.4 bits (91), Expect = 0.013
Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 1351 RPGEHLGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMA 1409
R G+ +G + + GI + + +S A + G +E GD+I+++N ++ +
Sbjct: 16 RKGDSVGLRLAGGNDVGIF-VAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 73
Query: 1410 LFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQ 1447
+ +T+ + + +
Sbjct: 74 FLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRT 111
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 36.5 bits (85), Expect = 0.013
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 206 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
++K P LGF + GI + ++ S+A ++G + GD+I ++N ++
Sbjct: 15 RVEKSPAGRLGFSVRGGSEHGLGIF-VSKVEEGSSAERAG-LCVGDKITEVNGLSLESTT 72
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
+ + + SSS + + +++
Sbjct: 73 MGSAVKVL-TSSSRLHMMVRRMG 94
Score = 36.5 bits (85), Expect = 0.013
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 1347 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
++K P LGF + GI + ++ S+A ++G + GD+I ++N ++
Sbjct: 15 RVEKSPAGRLGFSVRGGSEHGLGIF-VSKVEEGSSAERAG-LCVGDKITEVNGLSLESTT 72
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
+ + + SSS + + +++
Sbjct: 73 MGSAVKVL-TSSSRLHMMVRRMG 94
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 36.7 bits (85), Expect = 0.013
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 206 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
+ LG I GI I +K S + + G +E GD+IV++N D
Sbjct: 20 FISLVGSRGLGCSISSGPIQKPGIF-ISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLD 77
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
K+ + + +SS + +++
Sbjct: 78 HKEAVNVL-KSSRSLTISIVAAA 99
Score = 36.7 bits (85), Expect = 0.013
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 1347 TLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
+ LG I GI I +K S + + G +E GD+IV++N D
Sbjct: 20 FISLVGSRGLGCSISSGPIQKPGIF-ISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLD 77
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
K+ + + +SS + +++
Sbjct: 78 HKEAVNVL-KSSRSLTISIVAAA 99
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 37.3 bits (86), Expect = 0.014
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 206 TLKKRPGEHLGFCII--------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 251
L+K+ E GF + P+F + + + A+++G + GD ++
Sbjct: 32 LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLI 90
Query: 252 QINYQTVVGWDVKQVMALFEESSSDIFLT 280
++N Q VV +QV+ + + + + +
Sbjct: 91 EVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119
Score = 37.3 bits (86), Expect = 0.014
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 1347 TLKKRPGEHLGFCII--------------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIV 1392
L+K+ E GF + P+F + + + A+++G + GD ++
Sbjct: 32 LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLI 90
Query: 1393 QINYQTVVGWDVKQVMALFEESSSDIFLT 1421
++N Q VV +QV+ + + + + +
Sbjct: 91 EVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 35.7 bits (83), Expect = 0.015
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 206 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
T+ GF I I + + A + + GD IV IN ++ G
Sbjct: 5 TVDVAGPAPWGFRITGGRDFHTPI-MVTKVAERGKAKDAD-LRPGDIIVAINGESAEGML 62
Query: 263 VKQVMALFEESSSDIFLTLKKRP 285
+ + +S S + L L +
Sbjct: 63 HAEAQSKIRQSPSPLRLQLDRIT 85
Score = 35.7 bits (83), Expect = 0.015
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 1347 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
T+ GF I I + + A + + GD IV IN ++ G
Sbjct: 5 TVDVAGPAPWGFRITGGRDFHTPI-MVTKVAERGKAKDAD-LRPGDIIVAINGESAEGML 62
Query: 1404 VKQVMALFEESSSDIFLTLKKRP 1426
+ + +S S + L L +
Sbjct: 63 HAEAQSKIRQSPSPLRLQLDRIT 85
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 36.2 bits (84), Expect = 0.016
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 206 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
++ + G GF + + + + I+ A S K+ GDE+V IN G
Sbjct: 14 PVQLQGGAPWGFTLKGGLEHCEPL-TVSKIEDGGKAALSQKMRTGDELVNIN-----GTP 67
Query: 263 VK----QVMALFEESSSDIFLTLKKRP 285
+ + + L + S + L +++R
Sbjct: 68 LYGSRQEALILIKGSFRILKLIVRRRN 94
Score = 36.2 bits (84), Expect = 0.016
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 1347 TLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
++ + G GF + + + + I+ A S K+ GDE+V IN G
Sbjct: 14 PVQLQGGAPWGFTLKGGLEHCEPL-TVSKIEDGGKAALSQKMRTGDELVNIN-----GTP 67
Query: 1404 VK----QVMALFEESSSDIFLTLKKRP 1426
+ + + L + S + L +++R
Sbjct: 68 LYGSRQEALILIKGSFRILKLIVRRRN 94
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 35.7 bits (83), Expect = 0.018
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 206 TLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
+KK GF + I DI+ S A +G ++ D +V +N ++V D
Sbjct: 10 VIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHD 67
Query: 265 QVMALFEESSSDIFLTLKKRPCH 287
V+ + + L + +
Sbjct: 68 GVVEMIRKGGDQTTLLVLDKELE 90
Score = 35.7 bits (83), Expect = 0.018
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 1347 TLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
+KK GF + I DI+ S A +G ++ D +V +N ++V D
Sbjct: 10 VIKKGSNG-YGFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHD 67
Query: 1406 QVMALFEESSSDIFLTLKKRPCH 1428
V+ + + L + +
Sbjct: 68 GVVEMIRKGGDQTTLLVLDKELE 90
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 36.3 bits (84), Expect = 0.019
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
G+ LGF + + Q+ + +A +G GD IV I + +
Sbjct: 28 RFTAEEGD-LGFTL--RGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSE 83
Query: 266 VMALFEESSSDIFLTLK 282
VM L + D + +K
Sbjct: 84 VMKLLKSFGEDE-IEMK 99
Score = 36.3 bits (84), Expect = 0.019
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
G+ LGF + + Q+ + +A +G GD IV I + +
Sbjct: 28 RFTAEEGD-LGFTL--RGNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSE 83
Query: 1407 VMALFEESSSDIFLTLK 1423
VM L + D + +K
Sbjct: 84 VMKLLKSFGEDE-IEMK 99
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 35.8 bits (83), Expect = 0.020
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 206 TLKKRPGEHLGFCI-----------IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQIN 254
++ LGF I P GI + ++ A S ++ GD+I+Q N
Sbjct: 6 RVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-VTRVQPEGPA--SKLLQPGDKIIQAN 62
Query: 255 YQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ + + Q ++L + + + L + +
Sbjct: 63 GYSFINIEHGQAVSLLKTFQNTVELIIVREV 93
Score = 35.8 bits (83), Expect = 0.020
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 14/91 (15%)
Query: 1347 TLKKRPGEHLGFCI-----------IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQIN 1395
++ LGF I P GI + ++ A S ++ GD+I+Q N
Sbjct: 6 RVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-VTRVQPEGPA--SKLLQPGDKIIQAN 62
Query: 1396 YQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ + + Q ++L + + + L + +
Sbjct: 63 GYSFINIEHGQAVSLLKTFQNTVELIIVREV 93
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 35.7 bits (83), Expect = 0.020
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 204 LATLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 262
L L+K P GF + I ++ S A ++G + GD +V++N + V
Sbjct: 6 LCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63
Query: 263 VKQVMALFEESSSDIFLTL 281
+QV++ + + + L +
Sbjct: 64 HQQVVSRIRAALNAVRLLV 82
Score = 35.7 bits (83), Expect = 0.020
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 1345 LATLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWD 1403
L L+K P GF + I ++ S A ++G + GD +V++N + V
Sbjct: 6 LCCLEKGPNG-YGFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKET 63
Query: 1404 VKQVMALFEESSSDIFLTL 1422
+QV++ + + + L +
Sbjct: 64 HQQVVSRIRAALNAVRLLV 82
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 36.6 bits (84), Expect = 0.023
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 18/104 (17%)
Query: 198 QPSSLDLATLKKRPGEHLGFCII---------------PSFHGIHQIGDIKCNSTAYQSG 242
+++ L++ LGF I + GI+ + + A +G
Sbjct: 23 MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIY-VTRVSEGGPAEIAG 81
Query: 243 KIECGDEIVQINYQTVVGWDVKQVMALFEESSSD-IFLTLKKRP 285
++ GD+I+Q+N + Q + S + + L + ++
Sbjct: 82 -LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQS 124
Score = 36.6 bits (84), Expect = 0.023
Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 18/104 (17%)
Query: 1339 QPSSLDLATLKKRPGEHLGFCII---------------PSFHGIHQIGDIKCNSTAYQSG 1383
+++ L++ LGF I + GI+ + + A +G
Sbjct: 23 MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIY-VTRVSEGGPAEIAG 81
Query: 1384 KIECGDEIVQINYQTVVGWDVKQVMALFEESSSD-IFLTLKKRP 1426
++ GD+I+Q+N + Q + S + + L + ++
Sbjct: 82 -LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQS 124
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 35.4 bits (82), Expect = 0.025
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 206 TLKKRPGEH-LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
+ K GF I S + + +A GK+ GD+I+Q+N + +
Sbjct: 13 KIDKDTLLQDYGFHI--SESLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWE 68
Query: 265 QVMALFEESSSDIFLTLKKRP 285
+ + + E+ + +T+ +
Sbjct: 69 RAVDILREAEDSLSITVVRCT 89
Score = 35.4 bits (82), Expect = 0.025
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 1347 TLKKRPGEH-LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
+ K GF I S + + +A GK+ GD+I+Q+N + +
Sbjct: 13 KIDKDTLLQDYGFHI--SESLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWE 68
Query: 1406 QVMALFEESSSDIFLTLKKRP 1426
+ + + E+ + +T+ +
Sbjct: 69 RAVDILREAEDSLSITVVRCT 89
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 36.2 bits (83), Expect = 0.025
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 713 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKDSTKAHLFIYL-PGFTVAP--A 766
EGWL R + W++ + I+ + DK+ + ++ + + F V P
Sbjct: 4 EGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQ 63
Query: 767 VEVKSRK-----YALKIYH------TGTTFYLSADSQDEFSSWLGCLSQA 805
+V +I + + L A+S +E W+ L +
Sbjct: 64 TDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113
Score = 36.2 bits (83), Expect = 0.025
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 1859 EGWLFQRDRKISTVPQWIRGWFIIKGNHFYGF---TDKDSTKAHLFIYL-PGFTVAP--A 1912
EGWL R + W++ + I+ + DK+ + ++ + + F V P
Sbjct: 4 EGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQ 63
Query: 1913 VEVKSRK-----YALKIYH------TGTTFYLSADSQDEFSSWLGCLSQA 1951
+V +I + + L A+S +E W+ L +
Sbjct: 64 TDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 35.3 bits (82), Expect = 0.025
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 228 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
I I S A QS + GD +V I+ + + +S ++ LTL+K
Sbjct: 28 TISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84
Score = 35.3 bits (82), Expect = 0.025
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 1369 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
I I S A QS + GD +V I+ + + +S ++ LTL+K
Sbjct: 28 TISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 35.5 bits (82), Expect = 0.028
Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 27/116 (23%)
Query: 181 SELADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCII-----------PSFHGIHQI 229
S + E+ ++ ++ LGF I P GI +
Sbjct: 2 SHMGHELAKQEI-------------RVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-V 47
Query: 230 GDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
++ A S ++ GD+I+Q N + + + Q ++L + + + L + +
Sbjct: 48 TRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101
Score = 35.5 bits (82), Expect = 0.028
Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 27/116 (23%)
Query: 1322 SELADEMIREIHDPLLLQPSSLDLATLKKRPGEHLGFCII-----------PSFHGIHQI 1370
S + E+ ++ ++ LGF I P GI +
Sbjct: 2 SHMGHELAKQEI-------------RVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-V 47
Query: 1371 GDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
++ A S ++ GD+I+Q N + + + Q ++L + + + L + +
Sbjct: 48 TRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 101
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 35.1 bits (81), Expect = 0.031
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 215 LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESS 274
GF I S G +K + GD IV+IN Q V +V+ + ++
Sbjct: 23 FGFTIADSPTGQR----VKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP 78
Query: 275 SDIFLTL 281
+L
Sbjct: 79 IGSETSL 85
Score = 35.1 bits (81), Expect = 0.031
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 1356 LGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESS 1415
GF I S G +K + GD IV+IN Q V +V+ + ++
Sbjct: 23 FGFTIADSPTGQR----VKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP 78
Query: 1416 SDIFLTL 1422
+L
Sbjct: 79 IGSETSL 85
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 35.4 bits (82), Expect = 0.039
Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 209 KRPGEHLGFCII----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
+ LG I+ + I I ++ A + G++ GD+I+++N + +
Sbjct: 24 SKGRSGLGLSIVGGKDTPLNAIV-IHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHE 82
Query: 265 QVMALFEESSSDIFLTLKKRPCHSK 289
+ + ++ + L + + H +
Sbjct: 83 EAITALRQTPQKVRLVVYRDEAHYR 107
Score = 35.4 bits (82), Expect = 0.039
Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 1350 KRPGEHLGFCII----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
+ LG I+ + I I ++ A + G++ GD+I+++N + +
Sbjct: 24 SKGRSGLGLSIVGGKDTPLNAIV-IHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHE 82
Query: 1406 QVMALFEESSSDIFLTLKKRPCHSK 1430
+ + ++ + L + + H +
Sbjct: 83 EAITALRQTPQKVRLVVYRDEAHYR 107
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 35.0 bits (81), Expect = 0.040
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 206 TLKKRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 256
T+ ++ G LG I GI I + A ++G + GD+++++N
Sbjct: 8 TILRQTG-GLGISIAGGKGSTPYKGDDEGIF-ISRVSEEGPAARAG-VRVGDKLLEVNGV 64
Query: 257 TVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+ G + + + + + + + + +
Sbjct: 65 ALQGAEHHEAVEALRGAGTAVQMRVWRER 93
Score = 35.0 bits (81), Expect = 0.040
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 1347 TLKKRPGEHLGFCII---------PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQ 1397
T+ ++ G LG I GI I + A ++G + GD+++++N
Sbjct: 8 TILRQTG-GLGISIAGGKGSTPYKGDDEGIF-ISRVSEEGPAARAG-VRVGDKLLEVNGV 64
Query: 1398 TVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+ G + + + + + + + + +
Sbjct: 65 ALQGAEHHEAVEALRGAGTAVQMRVWRER 93
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 35.2 bits (81), Expect = 0.043
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
L K P + GF I S G +K + ++ GD I +I +Q V Q
Sbjct: 17 PLIKGP-KGFGFAIADSPTGQK----VKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQ 71
Query: 266 VMALFEESSSDIFLTLK 282
V+ + ++ + L
Sbjct: 72 VVEVLKQFPVGADVPLL 88
Score = 35.2 bits (81), Expect = 0.043
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
L K P + GF I S G +K + ++ GD I +I +Q V Q
Sbjct: 17 PLIKGP-KGFGFAIADSPTGQK----VKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQ 71
Query: 1407 VMALFEESSSDIFLTLK 1423
V+ + ++ + L
Sbjct: 72 VVEVLKQFPVGADVPLL 88
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 37.6 bits (86), Expect = 0.045
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 210 RPGEHLGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMA 268
R G+ +G + + GI + + +S A + G +E GD+I+++N ++ +
Sbjct: 8 RKGDSVGLRLAGGNDVGIF-VAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 65
Query: 269 LFEESSSDIFLTLKKRPCH 287
+ +T+ +
Sbjct: 66 FLLDLPKGEEVTILAQKKK 84
Score = 37.6 bits (86), Expect = 0.045
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 1351 RPGEHLGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMA 1409
R G+ +G + + GI + + +S A + G +E GD+I+++N ++ +
Sbjct: 8 RKGDSVGLRLAGGNDVGIF-VAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVL 65
Query: 1410 LFEESSSDIFLTLKKRPCH 1428
+ +T+ +
Sbjct: 66 FLLDLPKGEEVTILAQKKK 84
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 35.1 bits (81), Expect = 0.050
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 198 QPSSLDLATLKKRPGEHLGFCII----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 253
Q + D+ L+ + L + + + + A + G + GDEI+ I
Sbjct: 13 QIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKV-VVSAVYEGGAAERHGGVVKGDEIMAI 71
Query: 254 NYQTVVGWDVKQVMALF----EESSSDIFLTLKKRP 285
N + V + + + A + I L + P
Sbjct: 72 NGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP 107
Score = 35.1 bits (81), Expect = 0.050
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 1339 QPSSLDLATLKKRPGEHLGFCII----PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQI 1394
Q + D+ L+ + L + + + + A + G + GDEI+ I
Sbjct: 13 QIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKV-VVSAVYEGGAAERHGGVVKGDEIMAI 71
Query: 1395 NYQTVVGWDVKQVMALF----EESSSDIFLTLKKRP 1426
N + V + + + A + I L + P
Sbjct: 72 NGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCP 107
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 35.2 bits (81), Expect = 0.054
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 196 LLQPSSLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQ 252
LLQ L G LG I GI+ I + S A SG ++ GD+I++
Sbjct: 15 LLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIY-ITGVDPGSEAEGSG-LKVGDQILE 72
Query: 253 INYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
+N ++ + + + L +SS + LT+K
Sbjct: 73 VNGRSFLNILHDEAVRLL-KSSRHLILTVKDVG 104
Score = 35.2 bits (81), Expect = 0.054
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 1337 LLQPSSLDLATLKKRPGEHLGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQ 1393
LLQ L G LG I GI+ I + S A SG ++ GD+I++
Sbjct: 15 LLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIY-ITGVDPGSEAEGSG-LKVGDQILE 72
Query: 1394 INYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
+N ++ + + + L +SS + LT+K
Sbjct: 73 VNGRSFLNILHDEAVRLL-KSSRHLILTVKDVG 104
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 34.6 bits (80), Expect = 0.060
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 228 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCH 287
I +K A Q+ + GD ++ I+ + G + + + + +TL++
Sbjct: 32 TISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA 90
Query: 288 SK 289
+K
Sbjct: 91 AK 92
Score = 34.6 bits (80), Expect = 0.060
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 1369 QIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRPCH 1428
I +K A Q+ + GD ++ I+ + G + + + + +TL++
Sbjct: 32 TISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAA 90
Query: 1429 SK 1430
+K
Sbjct: 91 AK 92
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 34.4 bits (79), Expect = 0.073
Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 740 HFYGFTD-----------KDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLS 788
H + D + + + L V + K K+ +
Sbjct: 29 HGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQ 88
Query: 789 ADSQDEFSSWLGCLSQA 805
A++ WL L +
Sbjct: 89 AENAKIKREWLEVLEET 105
Score = 34.4 bits (79), Expect = 0.073
Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 1886 HFYGFTD-----------KDSTKAHLFIYLPGFTVAPAVEVKSRKYALKIYHTGTTFYLS 1934
H + D + + + L V + K K+ +
Sbjct: 29 HGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFPESRIFQ 88
Query: 1935 ADSQDEFSSWLGCLSQA 1951
A++ WL L +
Sbjct: 89 AENAKIKREWLEVLEET 105
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 35.7 bits (82), Expect = 0.084
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 198 QPSSLDLATLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQIN 254
+ L L + E LG + G+ I + A G ++ GDEIV+IN
Sbjct: 81 RSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLF-ISHLIKGGQADSVG-LQVGDEIVRIN 138
Query: 255 YQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
++ ++V+ L + + + ++
Sbjct: 139 GYSISSCTHEEVINLI-RTEKTVSIKVRHIG 168
Score = 35.7 bits (82), Expect = 0.084
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 1339 QPSSLDLATLKKRPGEHLGFCII---PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQIN 1395
+ L L + E LG + G+ I + A G ++ GDEIV+IN
Sbjct: 81 RSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLF-ISHLIKGGQADSVG-LQVGDEIVRIN 138
Query: 1396 YQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
++ ++V+ L + + + ++
Sbjct: 139 GYSISSCTHEEVINLI-RTEKTVSIKVRHIG 168
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 33.9 bits (78), Expect = 0.095
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 206 TLKKRPGEH-LGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 261
+L++ LGF I GI+ + ++ S A + G + GD+I+++N +++
Sbjct: 13 SLRRAKAHEGLGFSIRGGSEHGVGIY-VSLVEPGSLAEKEG-LRVGDQILRVNDKSLARV 70
Query: 262 DVKQVMALFEESSSDIFLTLKKR 284
+ + + S + L++
Sbjct: 71 THAEAVKAL-KGSKKLVLSVYSA 92
Score = 33.9 bits (78), Expect = 0.095
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 1347 TLKKRPGEH-LGFCI---IPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGW 1402
+L++ LGF I GI+ + ++ S A + G + GD+I+++N +++
Sbjct: 13 SLRRAKAHEGLGFSIRGGSEHGVGIY-VSLVEPGSLAEKEG-LRVGDQILRVNDKSLARV 70
Query: 1403 DVKQVMALFEESSSDIFLTLKKR 1425
+ + + S + L++
Sbjct: 71 THAEAVKAL-KGSKKLVLSVYSA 92
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 34.9 bits (79), Expect = 0.096
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 353 ENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEE 395
E +E + E + ++ ++E ED+ EDDDDDD+++E EEEE
Sbjct: 30 EQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 34.9 bits (79), Expect = 0.096
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 1494 ENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEE 1536
E +E + E + ++ ++E ED+ EDDDDDD+++E EEEE
Sbjct: 30 EQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 34.9 bits (79), Expect = 0.11
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 353 ENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTSVR 405
E+ + + E + + E+ ++D ++DDDDD+D + EEEEE +R
Sbjct: 29 NEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLR 81
Score = 34.9 bits (79), Expect = 0.11
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 1494 ENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTSVR 1546
E+ + + E + + E+ ++D ++DDDDD+D + EEEEE +R
Sbjct: 29 NEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLR 81
Score = 34.5 bits (78), Expect = 0.14
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 353 ENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSP 401
+N + + + + +E ED+ ED+DDDD+D+E EEEEE ++
Sbjct: 28 DNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQ 76
Score = 34.5 bits (78), Expect = 0.14
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 1494 ENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSP 1542
+N + + + + +E ED+ ED+DDDD+D+E EEEEE ++
Sbjct: 28 DNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQ 76
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 34.0 bits (77), Expect = 0.11
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 192 HDPLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNS------TAYQSGKIE 245
P S+ L ++ GF + + ++ + I
Sbjct: 6 SGVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIH 65
Query: 246 CGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 285
GD I++IN V V++V +++S + L ++ P
Sbjct: 66 PGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDP 105
Score = 34.0 bits (77), Expect = 0.11
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 1333 HDPLLLQPSSLDLATLKKRPGEHLGFCIIPSFHGIHQIGDIKCNS------TAYQSGKIE 1386
P S+ L ++ GF + + ++ + I
Sbjct: 6 SGVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIH 65
Query: 1387 CGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLTLKKRP 1426
GD I++IN V V++V +++S + L ++ P
Sbjct: 66 PGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDP 105
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 33.7 bits (77), Expect = 0.15
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 227 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 280
+ +K A+++G + GD I+++N ++V+G QV+AL + S + + L+
Sbjct: 63 IFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115
Score = 33.7 bits (77), Expect = 0.15
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1368 HQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQVMALFEESSSDIFLT 1421
+ +K A+++G + GD I+++N ++V+G QV+AL + S + + L+
Sbjct: 63 IFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 35.1 bits (80), Expect = 0.17
Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 8/176 (4%)
Query: 206 TLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
T+KK P GF + I + +S A SG + D IV++N + G
Sbjct: 14 TMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 71
Query: 265 QVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQVSYRWFLDDKITPPRISH 324
V++ + L + R + + K +PS++ ++ + + +
Sbjct: 72 DVVSAIRAGGDETKLLVVDRETD-----EFFKKCRVIPSQEHLNGPLPVPFTNGEIQKEN 126
Query: 325 FDIKPLGHALVNSVTSFTKNRKPLSGSFENAKEDVSIDIENQNKSIQKEEPEDDLE 380
AL + + ++ + N+++ S +P D
Sbjct: 127 SREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFN 182
Score = 35.1 bits (80), Expect = 0.17
Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 8/176 (4%)
Query: 1347 TLKKRPGEHLGFCII-PSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
T+KK P GF + I + +S A SG + D IV++N + G
Sbjct: 14 TMKKGPSG-YGFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHG 71
Query: 1406 QVMALFEESSSDIFLTLKKRPCHSKILGQIYMKPYRLPSKKQVSYRWFLDDKITPPRISH 1465
V++ + L + R + + K +PS++ ++ + + +
Sbjct: 72 DVVSAIRAGGDETKLLVVDRETD-----EFFKKCRVIPSQEHLNGPLPVPFTNGEIQKEN 126
Query: 1466 FDIKPLGHALVNSVTSFTKNRKPLSGSFENAKEDVSIDIENQNKSIQKEEPEDDLE 1521
AL + + ++ + N+++ S +P D
Sbjct: 127 SREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFN 182
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 33.6 bits (77), Expect = 0.20
Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 206 TLKKRPGEHLGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 264
+K R G+ +G + + GI + + +S A + G +E GD+I+++N +
Sbjct: 32 LVKFRKGDSVGLRLAGGNDVGI-FVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIRE 89
Query: 265 QVMALFEESSSDIFLTLKKR 284
+ + + +T+ +
Sbjct: 90 EAVLFLLDLPKGEEVTILAQ 109
Score = 33.6 bits (77), Expect = 0.20
Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1347 TLKKRPGEHLGFCIIP-SFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVK 1405
+K R G+ +G + + GI + + +S A + G +E GD+I+++N +
Sbjct: 32 LVKFRKGDSVGLRLAGGNDVGI-FVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIRE 89
Query: 1406 QVMALFEESSSDIFLTLKKR 1425
+ + + +T+ +
Sbjct: 90 EAVLFLLDLPKGEEVTILAQ 109
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein
interaction domain, growth arrest, signaling protein;
NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB:
1z1v_A
Length = 85
Score = 31.2 bits (70), Expect = 0.70
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 5 NVADWKPDQVADWLK---GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVGHQ 61
+ + W D V W ++ + N + G L L D + +
Sbjct: 8 DFSQWSVDDVITWCISTLEVE-ETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKA 66
Query: 62 EIILEAVDHLRN 73
++ +R+
Sbjct: 67 IKFKILINKMRD 78
Score = 31.2 bits (70), Expect = 0.74
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 1144 NTPINNWKPDQVADWLK---GLDVSIHRYVESFLNNHVNGQHLLNLQPDDLEHHGICKVG 1200
N + W D V W ++ + N + G L L D + +
Sbjct: 6 NEDFSQWSVDDVITWCISTLEVE-ETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLN 64
Query: 1201 HQEIILEAVDHLRN 1214
++ +R+
Sbjct: 65 KAIKFKILINKMRD 78
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 33.7 bits (77), Expect = 0.71
Identities = 6/56 (10%), Positives = 25/56 (44%)
Query: 346 KPLSGSFENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSP 401
L F + + + + + + + D ++D+D+++ ++ ++++ P
Sbjct: 50 SDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDP 105
Score = 33.7 bits (77), Expect = 0.71
Identities = 6/56 (10%), Positives = 25/56 (44%)
Query: 1487 KPLSGSFENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSP 1542
L F + + + + + + + D ++D+D+++ ++ ++++ P
Sbjct: 50 SDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDP 105
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP
protein, ATA-box DNA, transcription/DNA complex; 2.50A
{Saccharomyces cerevisiae}
Length = 286
Score = 33.3 bits (74), Expect = 0.82
Identities = 15/92 (16%), Positives = 32/92 (34%)
Query: 316 KITPPRISHFDIKPLGHALVNSVTSFTKNRKPLSGSFENAKEDVSIDIENQNKSIQKEEP 375
++T + ++ + + + + E V + + + +S +
Sbjct: 157 ELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTD 216
Query: 376 EDDLEDDDDDDEDNEPEEEEESISSPTSVRLY 407
E E DD DD+ E EE+ + LY
Sbjct: 217 EVGSELDDSDDDYLISEGEEDGPDENLMLCLY 248
Score = 33.3 bits (74), Expect = 0.82
Identities = 15/92 (16%), Positives = 32/92 (34%)
Query: 1457 KITPPRISHFDIKPLGHALVNSVTSFTKNRKPLSGSFENAKEDVSIDIENQNKSIQKEEP 1516
++T + ++ + + + + E V + + + +S +
Sbjct: 157 ELTINNANITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTD 216
Query: 1517 EDDLEDDDDDDEDNEPEEEEESISSPTSVRLY 1548
E E DD DD+ E EE+ + LY
Sbjct: 217 EVGSELDDSDDDYLISEGEEDGPDENLMLCLY 248
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 30.3 bits (69), Expect = 1.2
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 206 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 265
+ K P GF I S G Q +K + +S ++ GD IV++N + V Q
Sbjct: 8 HIVKGPMG-FGFTIADSPGGGGQR--VKQIVDSPRSRGLKEGDLIVEVNKKNVQALTHNQ 64
Query: 266 VMALFEESSSDIFLTL 281
V+ + ES +TL
Sbjct: 65 VVDMLVESPKGSEVTL 80
Score = 30.3 bits (69), Expect = 1.2
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 1347 TLKKRPGEHLGFCIIPSFHGIHQIGDIKCNSTAYQSGKIECGDEIVQINYQTVVGWDVKQ 1406
+ K P GF I S G Q +K + +S ++ GD IV++N + V Q
Sbjct: 8 HIVKGPMG-FGFTIADSPGGGGQR--VKQIVDSPRSRGLKEGDLIVEVNKKNVQALTHNQ 64
Query: 1407 VMALFEESSSDIFLTL 1422
V+ + ES +TL
Sbjct: 65 VVDMLVESPKGSEVTL 80
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis,
protein regulation, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 90
Score = 30.4 bits (68), Expect = 1.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 6 VADWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLE 51
V W PD +AD+ K L + ++ H++G LNL +D++
Sbjct: 19 VLGWDPDSLADYFKKL--NYKDCEKAVKKYHIDGARFLNLTENDIQ 62
Score = 29.7 bits (66), Expect = 2.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 1149 NWKPDQVADWLKGLDVSIHRYVESFLNNHVNGQHLLNLQPDDLE 1192
W PD +AD+ K L + ++ H++G LNL +D++
Sbjct: 21 GWDPDSLADYFKKL--NYKDCEKAVKKYHIDGARFLNLTENDIQ 62
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 32.3 bits (73), Expect = 1.6
Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 27/132 (20%)
Query: 701 NISVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG 760
N PD EGWL + V W R WFI+ N Y F + I L
Sbjct: 204 NDLTYTFFNPDREGWL---LKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLEN 260
Query: 761 FTVAPAVEVKSRKYALKIYHTG----------------------TTFYLSADSQDEFSSW 798
++ VE + ++Y+ + +SA S +E W
Sbjct: 261 LSI-REVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW 319
Query: 799 LGCLSQATIAHD 810
+ + +A+I+ D
Sbjct: 320 MKSI-KASISRD 330
Score = 32.3 bits (73), Expect = 1.6
Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 27/132 (20%)
Query: 1847 NISVKDLVMPDCEGWLFQRDRKISTVPQWIRGWFIIKGNHFYGFTDKDSTKAHLFIYLPG 1906
N PD EGWL + V W R WFI+ N Y F + I L
Sbjct: 204 NDLTYTFFNPDREGWL---LKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLEN 260
Query: 1907 FTVAPAVEVKSRKYALKIYHTG----------------------TTFYLSADSQDEFSSW 1944
++ VE + ++Y+ + +SA S +E W
Sbjct: 261 LSI-REVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW 319
Query: 1945 LGCLSQATIAHD 1956
+ + +A+I+ D
Sbjct: 320 MKSI-KASISRD 330
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 31.9 bits (73), Expect = 1.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 362 DIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTS 403
++ QKE DD ED+DD D ++E +++ +
Sbjct: 235 LLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNAN 276
Score = 31.9 bits (73), Expect = 1.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1503 DIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTS 1544
++ QKE DD ED+DD D ++E +++ +
Sbjct: 235 LLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNAN 276
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 31.6 bits (72), Expect = 2.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 364 ENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSP 401
+ K+ + + PE+ + D ++ E EPE E +
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPR 40
Score = 31.6 bits (72), Expect = 2.1
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 1505 ENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSP 1542
+ K+ + + PE+ + D ++ E EPE E +
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPR 40
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 32.2 bits (72), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 361 IDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEES 397
++ E + + +E ED+ EDDD ED++ E EE
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401
Score = 32.2 bits (72), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 1502 IDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEES 1538
++ E + + +E ED+ EDDD ED++ E EE
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401
Score = 31.4 bits (70), Expect = 3.2
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 363 IENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTS 403
+E + + ++E ED+ E++DDD + + E +
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFA 405
Score = 31.4 bits (70), Expect = 3.2
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 1504 IENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTS 1544
+E + + ++E ED+ E++DDD + + E +
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFA 405
Score = 31.1 bits (69), Expect = 5.0
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 364 ENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTS 403
+ ++ + ++D E+DDD +++ E E
Sbjct: 367 FEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAG 406
Score = 31.1 bits (69), Expect = 5.0
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 1505 ENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTS 1544
+ ++ + ++D E+DDD +++ E E
Sbjct: 367 FEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAG 406
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 312
Score = 31.7 bits (71), Expect = 2.6
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 349 SGSFENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTSVRLY- 407
S + ++ I + + +++++D++D+ E + R Y
Sbjct: 113 SETEHVQSTPAGGTKDSSIDDIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERYYD 172
Query: 408 -----HPKPRLPVQRRATITGTGASPTSKRAPLNLEQLWHELKLEKEWR 451
R+P + I G S +PL+ EQ++ ++ + +
Sbjct: 173 LYIAYSTSYRVP---KMYIVGF----NSNGSPLSPEQMFEDISADYRTK 214
Score = 31.7 bits (71), Expect = 2.6
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 1490 SGSFENAKEDVSIDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTSVRLY- 1548
S + ++ I + + +++++D++D+ E + R Y
Sbjct: 113 SETEHVQSTPAGGTKDSSIDDIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERYYD 172
Query: 1549 -----HPKPRLPVQRRATITGTGASPTSKRAPLNLEQLWHELKLEKEWR 1592
R+P + I G S +PL+ EQ++ ++ + +
Sbjct: 173 LYIAYSTSYRVP---KMYIVGF----NSNGSPLSPEQMFEDISADYRTK 214
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10)
helix, transcription; 2.07A {Drosophila melanogaster}
SCOP: a.60.1.1
Length = 82
Score = 29.4 bits (66), Expect = 2.6
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 1139 PFYKINTPI--NNWKPDQVADWLKGLDVSIHRY---VESFLNNHVNGQHLLNLQPDD 1190
P P+ +W V WL + E +NG+ L + D
Sbjct: 1 PLGSDGLPLDPRDWTRADVWKWLINM-AVSEGLEVTAELPQKFPMNGKALCLMSLDM 56
>1nvp_C Transcription initiation factor IIA beta chain; transcription
regulation, DNA, complex, transcription/DNA complex;
2.10A {Homo sapiens} SCOP: b.56.1.1
Length = 76
Score = 28.8 bits (64), Expect = 3.5
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 373 EEPEDDLEDDDDDDEDNEPEEEEES 397
+ E++ + +DD D E +E ++
Sbjct: 7 GQVEEEPLNSEDDVSDEEGQELFDT 31
Score = 28.8 bits (64), Expect = 3.5
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 1514 EEPEDDLEDDDDDDEDNEPEEEEES 1538
+ E++ + +DD D E +E ++
Sbjct: 7 GQVEEEPLNSEDDVSDEEGQELFDT 31
Score = 28.0 bits (62), Expect = 6.6
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 373 EEPEDDLEDDDDDDEDNEPEEEEESISSPTSVRLYHPKPR 412
E E +DD DE+ + + E++ +++ K +
Sbjct: 9 VEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNK 48
Score = 28.0 bits (62), Expect = 6.6
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 1514 EEPEDDLEDDDDDDEDNEPEEEEESISSPTSVRLYHPKPR 1553
E E +DD DE+ + + E++ +++ K +
Sbjct: 9 VEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNK 48
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 30.5 bits (68), Expect = 6.5
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 361 IDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTSV 404
D+E++ D +DD E + P +EE S V
Sbjct: 221 RDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264
Score = 30.5 bits (68), Expect = 6.5
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 1502 IDIENQNKSIQKEEPEDDLEDDDDDDEDNEPEEEEESISSPTSV 1545
D+E++ D +DD E + P +EE S V
Sbjct: 221 RDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEPSSKKRKV 264
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA;
HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP:
b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 28.0 bits (62), Expect = 7.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 366 QNKSIQKEEPEDDLEDDDDDDEDNEPEEEEES 397
+ + +E +L+D DDD +E EE+
Sbjct: 2 SSALLDTDEVGSELDDSDDDYLISEGEEDGPD 33
Score = 28.0 bits (62), Expect = 7.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 1507 QNKSIQKEEPEDDLEDDDDDDEDNEPEEEEES 1538
+ + +E +L+D DDD +E EE+
Sbjct: 2 SSALLDTDEVGSELDDSDDDYLISEGEEDGPD 33
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 30.3 bits (69), Expect = 7.5
Identities = 14/67 (20%), Positives = 26/67 (38%)
Query: 2116 NVQREHNTTLEAFMMSRQGEERRQNQSTSALRPPQQFAPSVPNSQLEDAACRTHIMRQSH 2175
+V+R+ E M + EE+R S ++ Q++ S PN + + +
Sbjct: 1 SVRRKSCIVKEMEKMKNKREEKRAQNSELRIKRAQEYDSSFPNWEFARMIKEFRVTMECS 60
Query: 2176 PSTSHKE 2182
P T
Sbjct: 61 PLTVTDP 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.383
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 32,219,883
Number of extensions: 1941696
Number of successful extensions: 4496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4009
Number of HSP's successfully gapped: 652
Length of query: 2182
Length of database: 6,701,793
Length adjustment: 109
Effective length of query: 2073
Effective length of database: 3,658,404
Effective search space: 7583871492
Effective search space used: 7583871492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)