RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy840
(178 letters)
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Length = 191
Score = 209 bits (533), Expect = 6e-70
Identities = 99/178 (55%), Positives = 124/178 (69%), Gaps = 8/178 (4%)
Query: 1 MVRVWYMDTDVKSDQRLEHHRTPKEYLDLQTLNKLTGVEYFNVQ------DEVLTKLRKD 54
MV+ WYMD + +D R H P + L+ L L GV Y+ + D L K+RK
Sbjct: 13 MVQAWYMD-ESTADPRKPHRAQPDRPVSLEQLRTL-GVLYWKLDADKYENDPELEKIRKM 70
Query: 55 RNYNYEDEITCSKDCLPNYEEKLKSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIE 114
RNY++ D IT KD LPNYEEK+K F+ EHLH DEEIR +L+GSGYFDVRDK D WIRI
Sbjct: 71 RNYSWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRIS 130
Query: 115 VTKGDLIIIPAGIYHRFTLDINNYVKAKRYFIGEPVWTPHNRPADDMECRLEYLKKIQ 172
+ KGD+I +PAGIYHRFTLD NYVKA R F+GEPVWTP+NRPAD + R++Y+ ++
Sbjct: 131 MEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTPYNRPADHFDARVQYMSFLE 188
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage,
oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6
PDB: 2hji_A
Length = 179
Score = 158 bits (402), Expect = 3e-50
Identities = 41/172 (23%), Positives = 61/172 (35%), Gaps = 25/172 (14%)
Query: 6 YMDTDVKSDQRLEHHRTPKEYLDLQTLNKLTGVEYFNVQ------------------DEV 47
+ D L H +E Q LN GV + Q
Sbjct: 6 FSVKD--PQNSLWHSTNAEE--IQQQLNAK-GVRFERWQADRDLGAAPTAETVIAAYQHA 60
Query: 48 LTKLRKDRNYNYEDEITCSKDCLPNYEEKLKSFYTEHLHTDEEIRLVLDGSGYFDVRDKF 107
+ KL ++ Y D I+ D P E + F EH H ++E+R ++G+G F +
Sbjct: 61 IDKLVAEKGYQSWDVISLRADN-PQKEALREKFLNEHTHGEDEVRFFVEGAGLFCLHIG- 118
Query: 108 DDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKAKRYFIGEPVWTPHNRPAD 159
D+ ++ K DLI +PA H F + A R F W D
Sbjct: 119 DEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPEGWIAQFTGDD 170
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis,
resistomycin, metalloprotein, cyclase, lyase; 1.20A
{Streptomyces resistomycificus} PDB: 3ht2_A
Length = 145
Score = 48.8 bits (116), Expect = 5e-08
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H H E VL+GS + D EV G+ I IP G H F
Sbjct: 54 PHFHEWEHEIYVLEGSMGLVLPD---QGRTEEVGPGEAIFIPRGEPHGF 99
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin,
tetramer, montreal- bacterial structural genomics
initiative, BSGI; 2.41A {Escherichia coli} SCOP:
b.82.1.23
Length = 354
Score = 50.1 bits (119), Expect = 7e-08
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 18/96 (18%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT---------LD 134
H H +R +++G G F D R + +GD I+ P +H LD
Sbjct: 116 HRHNQSALRFIVEGKGAFTAVDG----ERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLD 171
Query: 135 INN-----YVKAKRYFIGEPVWTPHNRPADDMECRL 165
+ + P R D R
Sbjct: 172 GLDLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRY 207
Score = 43.2 bits (101), Expect = 1e-05
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
TD I V++GSG + ++ + D+ ++P F
Sbjct: 284 ARTTDSTIYHVVEGSGQVIIGNE-----TFSFSAKDIFVVPTWHGVSFQ 327
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint
for structural genomics, JCSG; 1.65A {Thermotoga
maritima} SCOP: b.82.1.10
Length = 126
Score = 46.0 bits (109), Expect = 3e-07
Identities = 11/50 (22%), Positives = 13/50 (26%), Gaps = 5/50 (10%)
Query: 82 TEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H H E VL G V +G I + H F
Sbjct: 62 DRHSHPWEHEIFVLKGKLTVLKEQG-----EETVEEGFYIFVEPNEIHGF 106
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural
genomics, PSI-2, protein structur initiative; 1.85A
{Rhodopseudomonas palustris}
Length = 156
Score = 46.1 bits (109), Expect = 5e-07
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 82 TEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
T H ++ G G V + +V +GDL+ IP +H+F
Sbjct: 58 TLERHAHVHAVMIHRGHGQCLVGET-----ISDVAQGDLVFIPPMTWHQF 102
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family,
metal-binding site, beta barrel, PSI-2, NYSG structural
genomics; 2.00A {Halorhodospira halophila SL1}
Length = 167
Score = 46.1 bits (109), Expect = 5e-07
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 82 TEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
T H + +V+ G + D+ +T D + I +H+
Sbjct: 70 TLERHEHTHVVMVVRGHAEVVLDDR-----VEPLTPLDCVYIAPHAWHQI 114
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics,
joint center for structural genomics; 2.05A {Shewanella
frigidimarina ncimb 400}
Length = 102
Score = 44.8 bits (106), Expect = 6e-07
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 76 KLKSFYTEHLHTDE-EIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHR 130
K++ + H H D E+ +V++G+ RD+ I + G++ +IP G+ H+
Sbjct: 37 KVEGEFVWHEHADTDEVFIVMEGTLQIAFRDQ-----NITLQAGEMYVIPKGVEHK 87
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta
helix, germin-like PROT protein binding; HET: NAG BMA
MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Length = 163
Score = 45.9 bits (108), Expect = 8e-07
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWI----RIEVTKGDLIIIPAGIYHRF 131
H H+ EE+ VL G G + + I + IP H+
Sbjct: 57 HRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQV 108
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 44.4 bits (105), Expect = 9e-07
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H+H +++ L+G V ++ + G PAG H
Sbjct: 44 HVHEGSDKVYYALEGEVVVRVGEE-----EALLAPGMAAFAPAGAPHGVR 88
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ;
2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A*
3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A*
Length = 368
Score = 46.7 bits (110), Expect = 9e-07
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H H+ R V++G G + V + + +++GDL++ P +H
Sbjct: 119 HRHSQNAFRFVVEGEGVWTVVNG----DPVRMSRGDLLLTPGWCFHGH 162
Score = 45.2 bits (106), Expect = 3e-06
Identities = 7/51 (13%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 82 TEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
+ V +G+G + + ++ KGD+ ++P+ +
Sbjct: 293 ATRNEVGSTVFQVFEGAGAVVMNGE-----TTKLEKGDMFVVPSWVPWSLQ 338
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved
hypothetical protein, PSI, PR structure initiative;
2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Length = 115
Score = 44.7 bits (106), Expect = 1e-06
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H + + +L G + + V +G I++PAGI H
Sbjct: 55 RHSSPGDAMVTILSGLAEITIDQE-----TYRVAEGQTIVMPAGIPHALY 99
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll
(cupin-2), structural genomics, protein structure
initiative; 2.31A {Bacteroides fragilis}
Length = 125
Score = 44.5 bits (105), Expect = 1e-06
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 83 EHLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKA 141
H H EEI +L G G+ + + +IE+ GD + I +
Sbjct: 42 VHSHKQNEEIYGILSGKGFITIDGE-----KIELQAGDWLRIAPDGKRQI---SAASDSP 93
Query: 142 KRYF-IGEPVWTPHNRPADDMECRLEY 167
+ I + D +LE+
Sbjct: 94 IGFLCIQVKAGSLEGYTMTDGVVQLEH 120
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2
fold, unknown function, PSI-2, structure initiative;
HET: MSE; 2.30A {Rhodospirillum rubrum}
Length = 166
Score = 44.6 bits (105), Expect = 2e-06
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 82 TEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
T H ++L G G+ V V DL+ IP +H+F
Sbjct: 67 TLERHQHAHGVMILKGRGHAMVGRA-----VSAVAPYDLVTIPGWSWHQF 111
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction,
cupin, immune system; 1.40A {Xanthomonas campestris}
PDB: 2ilb_A 3h50_A
Length = 113
Score = 43.6 bits (103), Expect = 2e-06
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 83 EHLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
++ H ++ V+DG+G V + G LI I G H
Sbjct: 38 DNRHRGADQWLFVVDGAGEAIVDGH-----TQALQAGSLIAIERGQAHEIR 83
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid;
2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Length = 394
Score = 45.2 bits (106), Expect = 3e-06
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H HT I V G GY V K R + ++ D+ +PA +H
Sbjct: 310 HRHTGNVIYNVAKGQGYSIVGGK-----RFDWSEHDIFCVPAWTWHEH 352
Score = 42.1 bits (98), Expect = 3e-05
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHR 130
H H +R +++GSG + + D ++E+ D ++ P G +H
Sbjct: 139 HRHAASALRFIMEGSGAYTIVDG----HKVELGANDFVLTPNGTWHE 181
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle,
phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A
{Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A
1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A*
3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Length = 190
Score = 44.3 bits (104), Expect = 4e-06
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 84 HLHTD---EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H H E+ + L G G ++ D I + G ++ +P HR
Sbjct: 89 HFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTV 140
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.60A {Desulfitobacterium hafniense}
Length = 114
Score = 43.2 bits (102), Expect = 4e-06
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
E + + + L+L G D+ +I++ D++++PA H
Sbjct: 53 EEEYFGDTLYLILQGEAVITFDDQ-----KIDLVPEDVLMVPAHKIHAIA 97
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
unknown function; HET: MSE; 2.07A {Leptotrichia
buccalis}
Length = 227
Score = 44.5 bits (105), Expect = 4e-06
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H + + VLDG G + V K V KG+ ++PA I H
Sbjct: 168 PHKAPGDALVTVLDGEGKYYVDGK-----PFIVKKGESAVLPANIPHAVE 212
Score = 37.2 bits (86), Expect = 0.001
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 82 TEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLD 134
T +G+G + + + ++ GD + I A +
Sbjct: 51 TAEAMLGNRYYYCFNGNGEIFIENN-----KKTISNGDFLEITANHNYSIEAR 98
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology,
structural genomics, GEBA, midwest center structural
genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Length = 126
Score = 42.5 bits (100), Expect = 6e-06
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H H E+ ++L+G+ + ++ + G IP G+ HR
Sbjct: 56 AHEHPHEQAGVMLEGTLELTIGEE-----TRVLRPGMAYTIPGGVRHRA 99
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Length = 114
Score = 42.0 bits (99), Expect = 8e-06
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H L+G V + + +GDL+ + AG H
Sbjct: 51 SHSVAGPSTIQCLEGEVEIGVDGA-----QRRLHQGDLLYLGAGAAHDVN 95
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich,
oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus
japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A*
1gqg_A*
Length = 350
Score = 43.6 bits (102), Expect = 1e-05
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 84 HLHTDE-EIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H+H E GS + + ++ GD +P + H F
Sbjct: 66 HIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQ 115
Score = 30.9 bits (69), Expect = 0.19
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 83 EHLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
V +G V + D+ E+ GD+ IP G+ ++
Sbjct: 266 PTWSFPGACAFQVQEGR----VVVQIGDYAATELGSGDVAFIPGGVEFKY 311
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain,
structural genomics, PS protein structure initiative;
2.50A {Neisseria meningitidis}
Length = 107
Score = 41.4 bits (97), Expect = 1e-05
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 76 KLKSFYTEHLHTDE-EIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
KL Y H H ++ ++G D D + + +G++ ++P + HR
Sbjct: 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGS----MTIREGEMAVVPKSVSHRP 87
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc
genomics, joint center for structural genomics, JCSG;
1.90A {Shewanella frigidimarina}
Length = 116
Score = 41.4 bits (97), Expect = 1e-05
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
+ H H ++ V++G + +V +T GD +P + H
Sbjct: 45 AEGYVHAHRHSQVSYVVEGEFHVNVDGV-----IKVLTAGDSFFVPPHVDHGA 92
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide,
sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Length = 217
Score = 42.5 bits (99), Expect = 2e-05
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 78 KSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
Y H H EE+ V+ G F +R+ + +E G PA H T
Sbjct: 142 GLDYGWHEHLPEELYSVVSGRALFHLRNA--PDLMLEP--GQTRFHPANAPHAMT 192
>2q30_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans
subsp}
Length = 110
Score = 40.9 bits (96), Expect = 2e-05
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H E +VL+G G F I +G +++ P H
Sbjct: 50 SHNIEGELNIVVLEGEGEFVGDGD----AVIPAPRGAVLVAPISTPHGV 94
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase;
2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Length = 337
Score = 42.5 bits (99), Expect = 3e-05
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 84 HLHTDE-EIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H+H D E LVLDG + + R + GD IPAG H +
Sbjct: 62 HVHKDTHEGILVLDGKLELTLDGE-----RYLLISGDYANIPAGTPHSY 105
Score = 34.4 bits (78), Expect = 0.013
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 84 HLHTDE-EIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H H E L+G + I++ GD + +PA H +
Sbjct: 234 HYHEYHTETFYCLEGQMTMWTDGQ-----EIQLNPGDFLHVPANTVHSYR 278
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix,
ARAC family, activator, DNA-binding transcription,
transcription regulation; HET: PAM; 1.90A {Vibrio
cholerae}
Length = 276
Score = 41.4 bits (97), Expect = 4e-05
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 72 NYEEKLKSFY-TEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHR 130
K ++ D ++ + G ++ + E+ +I++ R
Sbjct: 12 YRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKN---CLVSYEINSSSIILLKKNSIQR 68
Query: 131 FTLDINNYVKAKRYFI 146
F+L + I
Sbjct: 69 FSLTSLSDENINVSVI 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 5e-05
Identities = 23/193 (11%), Positives = 53/193 (27%), Gaps = 49/193 (25%)
Query: 1 MVRVWYMDTDVKSDQRLEH-------HRTPKEYL----DLQTLNKLTGVEYFNVQDEVLT 49
+ +W+ + + PKE + K+ + + ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 50 KLRKDRNYNYEDEITCSKDCLPNYEEKLKSFY---------TEHLHTDEEIRLVLDGSGY 100
+ ++ +D L Y FY EH R+V +
Sbjct: 452 HYNIPKTFDSDD---LIPPYLDQY------FYSHIGHHLKNIEHPERMTLFRMV-----F 497
Query: 101 FDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKAKRYFIGEPVWTPHNRPADD 160
D R ++ ++ +G + Y K Y ++ +
Sbjct: 498 LDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFY---KPYI------CDNDPKYER 543
Query: 161 MECRLE-YLKKIQ 172
+ + +L KI+
Sbjct: 544 LVNAILDFLPKIE 556
Score = 37.5 bits (86), Expect = 0.001
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 8/111 (7%)
Query: 65 CSKDCLPNYEEKLKSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIP 124
KD L +E+ + + + + +L + D L+
Sbjct: 17 QYKDILSVFEDAFVDNF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 125 AGIYHRFTLDI--NNYVKAKRYFIGEPVWTPHNRPADDMECRLEYLKKIQN 173
+ +F ++ NY F+ P+ T +P+ +E ++ N
Sbjct: 76 EEMVQKFVEEVLRINY-----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Score = 34.8 bits (79), Expect = 0.011
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 23 PKEYLDLQTL-NKL--TGVEYFNVQD--EVLTKLRKDRNY------NYEDEITCSKDCLP 71
+LD + L K+ + L +L+ + Y YE + D LP
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 72 NYEEKL-KSFYTEHLHTDEEIRLVLDGSGYFD 102
EE L S YT+ L I L+ + F+
Sbjct: 554 KIEENLICSKYTDLLR----IALMAEDEAIFE 581
Score = 32.5 bits (73), Expect = 0.073
Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 62/201 (30%)
Query: 24 KEYLDLQTLN--KLTGVEYFNV----------QDEVLTKLRK-----DRNYNYEDEITCS 66
K ++ L K+ F + + VL L+K D N+ + + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 67 -KDCLPNYEEKLKSFYTEHLHTDEEIRLVLDGSGYFDVRDK-----FDDWIRIEVTKGDL 120
K + + + +L+ + E LVL +V++ F+ +I +T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY--ENCLLVLL-----NVQNAKAWNAFNLSCKILLTTRFK 275
Query: 121 II---IPAGIYHRFTLDINNYV----KAKRYFIGEPVWTPHNRPAD-------------- 159
+ + A +LD ++ + K + + RP D
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YL-DCRPQDLPREVLTTNPRRLS 331
Query: 160 -------DMECRLEYLKKIQN 173
D + K +
Sbjct: 332 IIAESIRDGLATWDNWKHVNC 352
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate,
metal BI protein; 1.75A {Bacillus subtilis} SCOP:
b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A
2uya_A 3s0m_A
Length = 385
Score = 41.7 bits (97), Expect = 5e-05
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYH 129
+ H H + E ++ GS + D+ +V +GDL P+G+ H
Sbjct: 90 AIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPH 140
Score = 33.7 bits (76), Expect = 0.025
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYH 129
H H + E + + G V GD+ +P + H
Sbjct: 273 HWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGH 319
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Length = 133
Score = 39.4 bits (92), Expect = 1e-04
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 83 EHLH-TDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H H + EI +L G G F K + + GD+ +G H
Sbjct: 72 LHKHEGEFEIYYILLGEGVFHDNGK-----DVPIKAGDVCFTDSGESHSI 116
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication,
swiss roll, PL protein; 2.00A {Canavalia ensiformis}
SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B
1cax_B
Length = 445
Score = 39.1 bits (90), Expect = 4e-04
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 70 LPNYEEKLKSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYH 129
+ Y K + H + + LVL+G + + D ++ +GD I I AG
Sbjct: 88 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNP-DGRDTYKLDQGDAIKIQAGTPF 146
Query: 130 RFTLDINNYVKAKRYFIGEPVWTPHN 155
+ ++ +N + P
Sbjct: 147 -YLINPDNNQNLRILKFAITFRRPGT 171
Score = 27.9 bits (61), Expect = 2.1
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 84 HLHTDE-EIRLVLDGSGYFDVRDKFDD-----------WIRIEVTKGDLIIIPAGIYH 129
H ++ I + +G ++ +++GD+I+IP+
Sbjct: 297 HYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPV 354
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix
domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella
pneumoniae subsp}
Length = 125
Score = 37.5 bits (87), Expect = 5e-04
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H+H ++ V+ G + + I + GD+ I G H
Sbjct: 55 HVHPHGQDTWTVISGEAEYHQGNG----IVTHLKAGDIAIAKPGQVHGAM 100
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis,
anticapsin synthesis, BI-Cu double stranded beta helix,
antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus
subtilis} PDB: 3h7y_A* 3h9a_A*
Length = 243
Score = 37.1 bits (85), Expect = 0.001
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H H +E+I + + G V +E+ G H
Sbjct: 161 FHKHRNEQIGICIGGGYDMTVEGC-----TVEMKFGTAYFCEPREDHGA 204
Score = 34.0 bits (77), Expect = 0.015
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKAK 142
H H + +I +V+ G V D R I P + H D + V A
Sbjct: 49 PHQHKEVQIGMVVSGELMMTVGDV----TRKMTALESAYIAPPHVPHGARNDTDQEVIAI 104
Query: 143 RYFIGEP 149
+
Sbjct: 105 DIKRLKA 111
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint
center for structural genomics, J protein structure
initiative; 1.90A {Salmonella typhimurium LT2} SCOP:
b.82.1.24
Length = 133
Score = 35.8 bits (82), Expect = 0.002
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKAK 142
+EI +VL+G + + + GD++ IP G F +
Sbjct: 70 PWTLNYDEIDMVLEGELHVRHEGE-----TMIAKAGDVMFIPKGSSIEFGTP----TSVR 120
Query: 143 RYFIGEP 149
++ P
Sbjct: 121 FLYVAWP 127
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.55A {Burkholderia
xenovorans}
Length = 134
Score = 35.4 bits (81), Expect = 0.003
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 84 HLHT-DEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H HT ++ VL G F+ ++D + + G P G+ HR
Sbjct: 59 HTHTVGFQLFYVLRGWVEFE----YEDIGAVMLEAGGSAFQPPGVRHRE 103
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for
STRU genomics, JCSG, protein structure initiative,
PSI-2, unknow function; HET: MSE; 1.41A {Bacillus
halodurans}
Length = 148
Score = 34.8 bits (80), Expect = 0.005
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDK-FDDWIRIEVTKGDLIIIPAGIYHRFT 132
H H D+ +R V +G G + + + + EV I+IPAG +H
Sbjct: 61 HPHLDQFLR-VEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVR 109
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding
protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A
{Synechocystis SP}
Length = 361
Score = 35.5 bits (81), Expect = 0.006
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H H + +E + VLDG V + +GD+ +P G H
Sbjct: 250 HWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAI 298
Score = 34.8 bits (79), Expect = 0.010
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 79 SFYTEHLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYH 129
+ H H + E V++G + +V KG L P G H
Sbjct: 63 AIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGWGH 114
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED
storage protein, sugar binding protein; 2.50A {Glycine
max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Length = 416
Score = 35.2 bits (80), Expect = 0.007
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 78 KSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYH 129
+ H + + VL G + + DD + GD IPAG +
Sbjct: 59 NTILLPHHADADFLLFVLSGRAILTLVNN-DDRDSYNLHPGDAQRIPAGTTY 109
>4axo_A EUTQ, ethanolamine utilization protein; structural protein,
bacterial microcompartment, BMC; 1.00A {Clostridium
difficile}
Length = 151
Score = 34.3 bits (78), Expect = 0.008
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 78 KSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINN 137
++ + L+ DE I V+DG+ + + ++ + G+LI IP G +F++
Sbjct: 75 ETTFDWTLNYDE-IDYVIDGTLDIIIDGR-----KVSASSGELIFIPKGSKIQFSVP--- 125
Query: 138 YVKAKRYFIGEPVWTPHNRPADDME 162
R+ V P + + ++E
Sbjct: 126 --DYARFIY---VTYPADWASQNLE 145
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP:
b.82.1.9
Length = 147
Score = 34.0 bits (77), Expect = 0.010
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYH 129
H H +I +V G G++ R K + KGD++ IP + H
Sbjct: 64 HSHPGGQILIVTRGKGFYQERGK----PARILKKGDVVEIPPNVVH 105
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A
{Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Length = 434
Score = 34.4 bits (78), Expect = 0.012
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 78 KSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYH 129
+ H + + +VL+G+ + + D + +G IPAG
Sbjct: 71 NTLLLPHHADADFLLVVLNGTAVLTLVNP-DSRDSYILEQGHAQKIPAGTTF 121
Score = 26.7 bits (58), Expect = 4.2
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 14/60 (23%)
Query: 84 HLHTD-EEIRLVLDGSGYFDV-------------RDKFDDWIRIEVTKGDLIIIPAGIYH 129
H + I ++ +G ++ R E+++ D+ +IPA
Sbjct: 282 HYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPV 341
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha
helices merohedral/ hemihedral twinning, plant protein;
1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A
1cau_A 1cav_A 1caw_A 1cax_A
Length = 178
Score = 33.4 bits (76), Expect = 0.019
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 69 CLPNYEEKLKSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIY 128
+ Y K + H + + LVL+G + + D ++ +GD I I AG
Sbjct: 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNP-DGRDTYKLDQGDAIKIQAGTP 100
Query: 129 H 129
Sbjct: 101 F 101
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED
protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Length = 418
Score = 33.7 bits (76), Expect = 0.026
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 78 KSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINN 137
+ + I ++ G V + ++ + +G + IP+G + L+ ++
Sbjct: 54 NTLVLPKHADADNILVIQQGQATVTVANG-NNRKSFNLDEGHALRIPSGFIS-YILNRHD 111
Query: 138 YVKAKRYFIGEPVWTPHN 155
+ I PV TP
Sbjct: 112 NQNLRVAKISMPVNTPGQ 129
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor,
carbohydrate binding, coiled-coil, jelly roll; HET: ARA;
1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A*
1xja_A 2ara_A
Length = 164
Score = 32.7 bits (74), Expect = 0.029
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 86 HTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKAKR-- 143
+ L + G G + + GD+++ P G H + +
Sbjct: 36 MKGYILNLTIRGQGVVKNQGR-----EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV 90
Query: 144 YFIGEPVWTP 153
YF W
Sbjct: 91 YFRPRAYWHE 100
>3lwc_A Uncharacterized protein; structural genomics, unknown function,
joint center for STRU genomics, JCSG, protein structure
initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Length = 119
Score = 31.9 bits (72), Expect = 0.038
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 86 HTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKAKRYF 145
+++ +VL+G V D + G+++ +P G A +
Sbjct: 57 MAVDDVMIVLEGR--LSVST---DGETVTAGPGEIVYMPKGETVTIRSHEE---GALTAY 108
Query: 146 IGEPVWTP 153
+ P W P
Sbjct: 109 VTYPHWRP 116
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint
center for structural genomics, JCSG; HET: MSE CXS;
1.85A {Acidithiobacillus ferrooxidans}
Length = 162
Score = 32.4 bits (73), Expect = 0.040
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAG-IYHRF 131
S H +EE VL G G + + + + GD + P H
Sbjct: 59 STEYHLHHYEEEAVYVLSGKGTLTMEND-----QYPIAPGDFVGFPCHAAAHSI 107
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target
T1583, PSI, protein STRU initiative; 2.46A {Deinococcus
radiodurans} SCOP: b.82.1.11
Length = 246
Score = 32.6 bits (74), Expect = 0.044
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
S +H E L+L+G G + + +++ VT GD+I + A +
Sbjct: 177 SLPYAEVHYMEHGLLMLEGEGLYKLE---ENY--YPVTAGDIIWMGAHCPQWY 224
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding,
endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana}
PDB: 4e2s_A
Length = 266
Score = 32.3 bits (73), Expect = 0.064
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
+ +H ++ L+L+G G + + D+W V GD+I + + +
Sbjct: 198 FLNVKEVHYNQHGLLLLEGQGIYRLG---DNW--YPVQAGDVIWMAPFVPQWY 245
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A
{Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB:
1phs_A*
Length = 397
Score = 32.1 bits (72), Expect = 0.070
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 69 CLPNY-----EEKLKSFYTEHLHTDEEIRLVLDGSGYFDV-----RDKFDDWIRIEVTKG 118
L +Y K ++ E + +V GS + R ++
Sbjct: 48 NLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFS 107
Query: 119 DLIIIPAGIYH 129
D IPAG
Sbjct: 108 DHQKIPAGTIF 118
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta
barrel protein, PSI, protei structure initiative; 2.70A
{Pseudomonas aeruginosa} SCOP: b.82.1.11
Length = 278
Score = 32.0 bits (72), Expect = 0.072
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
H E VL+G + + DW +EV GD + + A
Sbjct: 203 VIPFAETHVMEHGLYVLEGKAVYRLN---QDW--VEVEAGDFMWLRAFCPQAC 250
Score = 30.1 bits (67), Expect = 0.34
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 78 KSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINN 137
S E E + V++G ++ + + G IP G ++ N
Sbjct: 80 GSDKPEQDPNAEAVLFVVEGELSLTLQGQ-----VHAMQPGGYAFIPPGADYKVR---NT 131
Query: 138 YVKAKRYFIGEPVWTPHNR 156
+ R+ + +
Sbjct: 132 TGQHTRFHWIRKHYQKVDG 150
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone
NAME 3174C1TCT3B1, T T1521, PSI, protein initiative;
2.60A {Escherichia coli} SCOP: b.82.1.11
Length = 261
Score = 31.5 bits (71), Expect = 0.10
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
S H E +L G G +++ ++W I V KGD I + A
Sbjct: 191 SHGYIETHVQEHGAYILSGQGVYNLD---NNW--IPVKKGDYIFMGAYSLQAG 238
Score = 31.2 bits (70), Expect = 0.13
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 5/50 (10%)
Query: 83 EHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
E V+ G+ K +++G + P G F
Sbjct: 76 FGGEGIETFLYVISGNITAKAEGK-----TFALSEGGYLYCPPGSLMTFV 120
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO
center for structural genomics, JCSG, protein structure
INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Length = 163
Score = 30.8 bits (69), Expect = 0.14
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAG--IYHRF 131
H H + +E +V +G+ + GD PAG H+F
Sbjct: 60 HYHMEQDEFVMVTEGALVLVDDQG-----EHPMVPGDCAAFPAGDPNGHQF 105
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target
T1582, PSI, protein STRU initiative; 2.05A {Enterococcus
faecalis} SCOP: b.82.1.11
Length = 274
Score = 30.8 bits (69), Expect = 0.17
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
S H E ++ G G +++ ++W V KGD I + A +
Sbjct: 194 SHAYIETHVQEHGAYLISGQGMYNLD---NEW--YPVEKGDYIFMSAYVPQAA 241
Score = 29.2 bits (65), Expect = 0.73
Identities = 5/55 (9%), Positives = 12/55 (21%), Gaps = 5/55 (9%)
Query: 78 KSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
+ + + V+DG + E+ G +
Sbjct: 74 QQTTGFGGDGIQTLVYVIDGRLRVSDGQE-----THELEAGGYAYFTPEMKMYLA 123
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint
center for structura genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Length = 223
Score = 30.3 bits (68), Expect = 0.24
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
S ++ H H E +VLDG +D+ D+ G + P H
Sbjct: 54 SRFSAHTHDGGEEFIVLDGV----FQDEHGDY-----PAGTYVRNPPTTSHVP 97
>3bcw_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Length = 123
Score = 29.5 bits (66), Expect = 0.25
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 81 YTEHLHTDE--EIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNY 138
+ +T E +++G D V GD I+P G R+ +++ +
Sbjct: 59 GSFQSNTTGYIEYCHIIEGEARLVD----PDGTVHAVKAGDAFIMPEGYTGRW--EVDRH 112
Query: 139 VKAKRYFIGEP 149
VK K YF+
Sbjct: 113 VK-KIYFVTHL 122
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein
(globulins) family, SEED storage PR plant protein; 2.27A
{Amaranthus hypochondriacus}
Length = 465
Score = 30.6 bits (68), Expect = 0.27
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDD-WIRIEVTKGDLIIIPAGIYH 129
H + + I + G G + + E+++G L+++P
Sbjct: 339 HYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAI 386
Score = 28.3 bits (62), Expect = 1.6
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 66 SKDCLPNYEEKLKSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPA 125
C YE + F E G +D+ + +GD+ +PA
Sbjct: 87 IPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLR--EGDIFAMPA 144
Query: 126 GIYH 129
G+ H
Sbjct: 145 GVSH 148
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein,
plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Length = 493
Score = 29.9 bits (66), Expect = 0.44
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDD-WIRIEVTKGDLIIIPAGIYH 129
H + + + V G G V + + E+ +G L+++P
Sbjct: 383 HWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVVPQNFVV 430
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A
{Arachis hypogaea}
Length = 510
Score = 29.9 bits (66), Expect = 0.49
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDD-WIRIEVTKGDLIIIPAGIYH 129
H +T+ I L G + V D + E+ +G ++++P
Sbjct: 388 HYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAV 435
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein,
storage protein, plant protein; 2.98A {Brassica napus}
Length = 466
Score = 29.9 bits (66), Expect = 0.49
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDD-WIRIEVTKGDLIIIPAGIYH 129
+ + + V DG + V + D +V++G L+ IP G
Sbjct: 339 QWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSV 386
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function
(DUF861), cupin_3 (PF05899), STR genomics; HET: MSE;
1.30A {Pseudomonas syringae PV}
Length = 238
Score = 29.3 bits (65), Expect = 0.56
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 86 HTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKAKRYF 145
H E+ +++G V ++ + V GD + + G YV+ K Y
Sbjct: 184 HKIHELMNLIEGR----VVLSLENGSSLTVNTGDTVFVAQG--APCKWTSTGYVR-KFYA 236
Query: 146 I 146
+
Sbjct: 237 V 237
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage
globulin, plant protein; 2.20A {Cucurbita maxima} PDB:
2evx_A
Length = 459
Score = 29.5 bits (65), Expect = 0.60
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDD-WIRIEVTKGDLIIIPAGIYH 129
H + + G+ V D F EV +G +++IP
Sbjct: 338 HYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVV 385
>2yu1_A JMJC domain-containing histone demethylation PROT;
JMJC-domain-containing histone demethylases,
oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB:
2yu2_A
Length = 451
Score = 28.8 bits (63), Expect = 1.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 105 DKFDDWIRIEVTKGDLIIIPAGIYH 129
D+ D RIE+ +G +IP+G H
Sbjct: 260 DRVSDCQRIELKQGYTFVIPSGWIH 284
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase,
iron, metal-binding, oxidoreductase; 1.95A
{Acinetobacter johnsonii}
Length = 153
Score = 28.1 bits (62), Expect = 1.2
Identities = 5/46 (10%), Positives = 10/46 (21%), Gaps = 3/46 (6%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYH 129
H+H + G ++ +G H
Sbjct: 62 HIHAGPGEYFLTKGKMEVRGGEQEGGST---AYAPSYGFESSGALH 104
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant
protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2
PDB: 1ud1_A 1ucx_A
Length = 476
Score = 28.7 bits (63), Expect = 1.3
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDD-WIRIEVTKGDLIIIPAGIYH 129
H + + I L+G V + + E+ +G ++I+P
Sbjct: 354 HYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVV 401
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism,
metal-binding, sugar ISO stress response; HET: MSE;
1.23A {Bacillus subtilis subsp}
Length = 175
Score = 28.0 bits (62), Expect = 1.3
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 70 LPNYEEKLKSFY----TEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPA 125
+ E K ++F +L+ + E + + R+ + W IE+ G IP
Sbjct: 74 VDGQEGKQETFRCRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPP 133
Query: 126 GIYHRF 131
H F
Sbjct: 134 NTKHWF 139
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A
{Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A*
2et7_A
Length = 201
Score = 27.9 bits (61), Expect = 1.3
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 84 HLHTD-EEIRLVLDGSGYFDVRDKFDD---WIRIEVTKGDLIIIPAGIYH 129
H+H EI +V+ G + D V G+ +IP G+ H
Sbjct: 88 HIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMH 137
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 28.5 bits (62), Expect = 1.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 105 DKFDDWIRIEVTKGDLIIIPAGIYH 129
DK D + V +G + +P G H
Sbjct: 330 DKVDKCYKCVVKQGHTLFVPTGWIH 354
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 87 TDEEIRLVLDGSGYFDVRDKFDD-----WIRIEVTKGDLIIIPAGIYH 129
T++ D F D R+ + +G ++IPAG H
Sbjct: 337 TEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWIH 384
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A
{Candida albicans} SCOP: b.82.1.3
Length = 440
Score = 28.0 bits (61), Expect = 1.8
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 90 EIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAG 126
I + +G G ++ DD + ++ G + + G
Sbjct: 381 SIVIATNGKGT--IQITGDDSTKQKIDTGYVFFVAPG 415
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 28.0 bits (61), Expect = 1.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 105 DKFDDWIRIEVTKGDLIIIPAGIYH 129
D+ D + V +G + IP G H
Sbjct: 295 DQVDKCYKCSVKQGQTLFIPTGWIH 319
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein,
pisum sativum L., SEED storage protein, storage protein,
plant protein; 2.61A {Pisum sativum}
Length = 496
Score = 28.0 bits (61), Expect = 1.9
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 10/52 (19%)
Query: 84 HLHTD-EEIRLVLDGSGYFDV-----RDKFDDWIRIEVTKGDLIIIPAGIYH 129
H + + I L G V FD E+ G + +P
Sbjct: 374 HYNLNANSIIYALKGRARLQVVNCNGNTVFDG----ELEAGRALTVPQNYAV 421
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A
{Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Length = 394
Score = 27.8 bits (61), Expect = 2.0
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 16/118 (13%)
Query: 12 KSDQRLEHHRTPKEYLDLQTLNKLTGVEYFNVQDEVLTKLRKDRNYNYE---DEITCSKD 68
SD L TPK Y+D+ L E + + ++ ++ D+ S
Sbjct: 271 NSDNVLRAGLTPK-YIDIPELVANVKFEPKPAGELLTAPVKSGAELDFPIPVDDFAFSLH 329
Query: 69 CLPNYEEKLKSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAG 126
L E + I ++G ++ R+ + G+ I A
Sbjct: 330 DLALQETSIG-------QHSAAILFCVEGEAVLRKDEQ-----RLVLKPGESAFIGAD 375
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics
center for structural genomics, JCSG, protein structure
INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB:
1lkn_A 2k9z_A
Length = 101
Score = 26.8 bits (59), Expect = 2.3
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 86 HTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFTLDINNYVKAKRYF 145
+ E +L+G +D + + KGDL+ P G R + V+ K Y
Sbjct: 47 YDTNETCYILEGKVEVT----TEDGKKYVIEKGDLVTFPKG--LRCRWKVLEPVR-KHYN 99
Query: 146 I 146
+
Sbjct: 100 L 100
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase,
structural genomics, center for structural genomics,
JCSG; 2.10A {Ralstonia eutropha}
Length = 112
Score = 26.8 bits (59), Expect = 2.3
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHR 130
+ +E +V+ GS + D + GD + +PA HR
Sbjct: 49 YDSPQDEWVMVVSGSAGIECEG---DTAPRVMRPGDWLHVPAHCRHR 92
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative
acetylacetone dioxygenase, structural genomics; HET: MSE
PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Length = 145
Score = 26.9 bits (59), Expect = 2.7
Identities = 6/49 (12%), Positives = 8/49 (16%), Gaps = 3/49 (6%)
Query: 84 HLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRFT 132
H+H + G A H T
Sbjct: 60 HVHVGPGEYFLTKGKMDVRGGKAAGGDT---AIAPGYGYESANARHDKT 105
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji
domain lysine demethylase, metal-binding, zinc,
zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A*
3u78_A*
Length = 397
Score = 27.5 bits (60), Expect = 3.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 105 DKFDDWIRIEVTKGDLIIIPAGIYH 129
DK D + V +G + +P G H
Sbjct: 239 DKVDKCYKCVVKQGHTLFVPTGWIH 263
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural
genomics consortium, SGC, HI demethylase,
oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Length = 489
Score = 27.2 bits (59), Expect = 3.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 93 LVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHR 130
L L S F D + ++ + GDL+ P G H+
Sbjct: 210 LALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQ 247
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent
dioxygenases, histone TAI protein, protein binding; HET:
OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B*
3pus_A*
Length = 392
Score = 27.1 bits (59), Expect = 3.9
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 105 DKFDDWIRIEVTKGDLIIIPAGIYH 129
D+ D + V +G + IP+G +
Sbjct: 238 DQVDKCYKCIVKQGQTLFIPSGWIY 262
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics,
montreal-kingston BA structural genomics initiative,
BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Length = 246
Score = 26.8 bits (59), Expect = 4.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 86 HTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGIYHRF 131
D +I +V+DG R K ++ ++ G+ I +P G+YH F
Sbjct: 152 TADSDITVVIDG-----CRQKHTAGSQLRLSPGESICLPPGLYHSF 192
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
c.47.1.10
Length = 162
Score = 26.0 bits (58), Expect = 4.7
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 21/59 (35%)
Query: 64 TCSKDCLPNYEEKLKSFYT---------------------EHLHTDEEIRLVLDGSGYF 101
TCS +P + EK + + ++ ++ + DGS +
Sbjct: 50 TCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATY 108
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A
{Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Length = 239
Score = 26.5 bits (57), Expect = 4.8
Identities = 11/65 (16%), Positives = 14/65 (21%), Gaps = 16/65 (24%)
Query: 84 HLHTDE-EIRLVLDGS---------------GYFDVRDKFDDWIRIEVTKGDLIIIPAGI 127
H+H E +G D I+ LI P
Sbjct: 59 HIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHY 118
Query: 128 YHRFT 132
H F
Sbjct: 119 MHGFV 123
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural
genomics, NEW YORK structura genomics research
consortium; 2.20A {Sinorhizobium meliloti}
Length = 184
Score = 26.1 bits (58), Expect = 5.5
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 21/59 (35%)
Query: 64 TCSKDCLPNYEEKLKSFYT---------------------EHLHTDEEIRLVLDGSGYF 101
TCS + LP Y E + H +I + D + F
Sbjct: 71 TCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAF 129
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis}
PDB: 3qlk_A 3s8d_A
Length = 455
Score = 26.6 bits (59), Expect = 5.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 157 PADDMECRLEYLKKIQNAEAAA 178
P M+ R Y +K+ E A
Sbjct: 12 PRGSMDIRALYDEKLTTPEEAV 33
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 26.4 bits (59), Expect = 5.8
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 78 KSFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVT 116
FY +++ I + G K+++ I ++VT
Sbjct: 10 GEFYIPPEPSNDAIEIFSSGIASGIHFSKYNN-IPVKVT 47
>2l1t_A Uncharacterized protein; putative C-DI-GMP binding, GSU3033, PILZ,
structural genomic biology, protein structure
initiative; NMR {Geobacter sulfurreducens}
Length = 109
Score = 25.4 bits (55), Expect = 6.2
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 79 SFYTEHLHTDEEIRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIII 123
S Y + +++ L + FD I KG L +
Sbjct: 7 SEYGRYFEQLQKVNLTVRLGD----TGSFDGTAAITSLKGSLAWL 47
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 25.7 bits (57), Expect = 7.0
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 21/59 (35%)
Query: 64 TCSKDCLPNYEEKLKSFYT---------------------EHLHTDEEIRLVLDGSGYF 101
CS +P Y+ + F E + + I D G F
Sbjct: 58 VCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSF 116
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose
6-phosphate, PSI, protein structure initiative; 1.80A
{Bacillus subtilis} SCOP: b.82.1.3
Length = 319
Score = 26.1 bits (57), Expect = 7.2
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 15/58 (25%)
Query: 80 FYTEHLHTDEE----------IRLVLDGSGYFDVRDKFDDWIRIEVTKGDLIIIPAGI 127
F + E I V++GSG DK + KGD I+PA +
Sbjct: 251 FSVYKWDINGEAEMAQDESFLICSVIEGSGLLKYEDK-----TCPLKKGDHFILPAQM 303
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A
{Arenicola marina}
Length = 167
Score = 25.6 bits (57), Expect = 7.2
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 21/59 (35%)
Query: 64 TCSKDCLPNYEEKLKSFYT---------------------EHLHTDEEIRLVLDGSGYF 101
SK LP Y E+ + + + D++++++ D G F
Sbjct: 46 GSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAF 104
>4f82_A Thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.85A
{Burkholderia cenocepacia}
Length = 176
Score = 25.7 bits (57), Expect = 8.0
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 21/59 (35%)
Query: 64 TCSKDCLPNYEEKLKSFYT---------------------EHLHTDEEIRLVLDGSGYF 101
TCS +P Y E + LHT ++R++ DGS F
Sbjct: 62 TCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAF 120
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog,
DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A
1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Length = 173
Score = 25.7 bits (57), Expect = 8.4
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 21/59 (35%)
Query: 64 TCSKDCLPNYEEKLKSFYT---------------------EHLHTDEEIRLVLDGSGYF 101
CSK LP + E+ ++ + ++RL+ D +G F
Sbjct: 58 GCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAF 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.425
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,034,500
Number of extensions: 183249
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 121
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)