Query psy8401
Match_columns 103
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 17:49:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00549 Ligase_CoA: CoA-ligas 10.8 1.2E+02 0.0026 21.6 0.7 13 70-82 49-61 (153)
2 PF13110 DUF3966: Protein of u 6.5 2E+02 0.0044 18.5 0.4 11 26-36 2-12 (50)
3 PF02973 Sialidase: Sialidase, 5.6 6.6E+02 0.014 18.8 2.7 23 17-39 57-79 (190)
4 PF07255 Benyvirus_14KDa: Beny 5.0 3.3E+02 0.0072 20.2 0.8 11 27-37 93-103 (123)
5 PF04765 DUF616: Protein of un 4.8 7E+02 0.015 20.1 2.5 35 3-37 133-167 (305)
6 PRK06091 membrane protein FdrA 4.7 3.3E+02 0.0071 23.8 0.7 12 70-81 385-396 (555)
7 PF04922 DIE2_ALG10: DIE2/ALG1 4.0 1.8E+02 0.0039 23.6 -1.3 13 20-32 300-312 (379)
8 PF09923 DUF2155: Uncharacteri 3.7 4E+02 0.0087 17.7 0.3 8 71-78 77-84 (90)
9 PF11372 DUF3173: Domain of un 3.6 3E+02 0.0065 17.6 -0.3 9 31-39 33-41 (59)
10 PLN03147 ribosomal protein S19 3.1 5.8E+02 0.013 17.6 0.6 14 28-41 39-52 (92)
No 1
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=10.75 E-value=1.2e+02 Score=21.64 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=7.0
Q ss_pred CCCCCCCccCCCC
Q psy8401 70 NNRNHPMYDNTRN 82 (103)
Q Consensus 70 nnrnhpmydntrn 82 (103)
..|-|||.|-+.-
T Consensus 49 ~GrphPmid~~~~ 61 (153)
T PF00549_consen 49 QGRPHPMIDPSTR 61 (153)
T ss_dssp TTS--TTT-SSHH
T ss_pred ccCcCCCcCHHHH
Confidence 3688999997653
No 2
>PF13110 DUF3966: Protein of unknown function (DUF3966)
Probab=6.50 E-value=2e+02 Score=18.49 Aligned_cols=11 Identities=45% Similarity=0.685 Sum_probs=7.9
Q ss_pred eEEeecceeEe
Q psy8401 26 SMYINRNFSIY 36 (103)
Q Consensus 26 smyinrnfsiy 36 (103)
-|||.|.||--
T Consensus 2 i~yisrkfsqe 12 (50)
T PF13110_consen 2 IVYISRKFSQE 12 (50)
T ss_pred EEEeehhhhhh
Confidence 37888888753
No 3
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=5.64 E-value=6.6e+02 Score=18.79 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=13.0
Q ss_pred cccCCCeeeeEEeecceeEeeCC
Q psy8401 17 NTRNNNRHYSMYINRNFSIYNNR 39 (103)
Q Consensus 17 ntrnnnrhysmyinrnfsiynnr 39 (103)
|....|.|++|||.-+.-.+--|
T Consensus 57 n~~~~n~YF~lyv~~~~~G~E~R 79 (190)
T PF02973_consen 57 NSTKGNEYFSLYVSNNKLGFELR 79 (190)
T ss_dssp -TSTTSEEEEEEEETTEEEEEEE
T ss_pred CCCCccceEEEEEECCEEEEEEe
Confidence 34444578888887664444433
No 4
>PF07255 Benyvirus_14KDa: Benyvirus 14KDa protein; InterPro: IPR009884 This family consists of several Benyvirus specific 14 kDa proteins of around 125 residues in length. Members of this family contain 9 conserved cysteine residues. The function of this family is unknown.
Probab=5.04 E-value=3.3e+02 Score=20.15 Aligned_cols=11 Identities=45% Similarity=0.570 Sum_probs=8.2
Q ss_pred EEeecceeEee
Q psy8401 27 MYINRNFSIYN 37 (103)
Q Consensus 27 myinrnfsiyn 37 (103)
.-.+|||||-.
T Consensus 93 ~R~~RNFSI~G 103 (123)
T PF07255_consen 93 LRKVRNFSILG 103 (123)
T ss_pred EEEecceeEEe
Confidence 34689999964
No 5
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=4.79 E-value=7e+02 Score=20.08 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=20.6
Q ss_pred ccCCCCcceeeeeecccCCCeeeeEEeecceeEee
Q psy8401 3 DNTRNNNRHYSMYSNTRNNNRHYSMYINRNFSIYN 37 (103)
Q Consensus 3 dntrnnnrhysmysntrnnnrhysmyinrnfsiyn 37 (103)
+..|-+.|-+-|-.----.+--||+||.-++.|-.
T Consensus 133 ~d~rr~~r~~K~lpHrlfp~y~ySIWID~ki~L~~ 167 (305)
T PF04765_consen 133 DDPRRNGRIPKLLPHRLFPNYDYSIWIDGKIQLIV 167 (305)
T ss_pred cchhhcCcccceeccccCCCCceEEEEeeeEEEec
Confidence 33444445555544444455568888888887754
No 6
>PRK06091 membrane protein FdrA; Validated
Probab=4.73 E-value=3.3e+02 Score=23.85 Aligned_cols=12 Identities=50% Similarity=0.647 Sum_probs=9.8
Q ss_pred CCCCCCCccCCC
Q psy8401 70 NNRNHPMYDNTR 81 (103)
Q Consensus 70 nnrnhpmydntr 81 (103)
..|-|||.|.+-
T Consensus 385 ~GrpHPMIDp~~ 396 (555)
T PRK06091 385 VGRPHPMIDPTL 396 (555)
T ss_pred CCCCCCCcChHH
Confidence 578999999864
No 7
>PF04922 DIE2_ALG10: DIE2/ALG10 family; InterPro: IPR007006 Members of this entry are glycosyltransferases, belonging to the ALG10 family. The majority of the members are annotated as alpha-1,2 glucosyltransferas. The ALG10 protein from Saccharomyces cerevisiae (Baker's yeast) encodes the alpha-1,2 glucosyltransferase of the endoplasmic reticulum. This protein has been characterised in Rat as potassium channel regulator 1 [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane
Probab=4.04 E-value=1.8e+02 Score=23.56 Aligned_cols=13 Identities=54% Similarity=1.038 Sum_probs=8.0
Q ss_pred CCCeeeeEEeecc
Q psy8401 20 NNNRHYSMYINRN 32 (103)
Q Consensus 20 nnnrhysmyinrn 32 (103)
-.||||..||=|.
T Consensus 300 ADNRHY~FYiwrr 312 (379)
T PF04922_consen 300 ADNRHYTFYIWRR 312 (379)
T ss_pred cccceeehHHHHH
Confidence 3567777776554
No 8
>PF09923 DUF2155: Uncharacterized protein conserved in bacteria (DUF2155); InterPro: IPR019225 This entry contains various hypothetical prokaryotic proteins that have no known function.
Probab=3.70 E-value=4e+02 Score=17.72 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=4.8
Q ss_pred CCCCCCcc
Q psy8401 71 NRNHPMYD 78 (103)
Q Consensus 71 nrnhpmyd 78 (103)
.-.||.||
T Consensus 77 ~~eHP~YD 84 (90)
T PF09923_consen 77 ALEHPRYD 84 (90)
T ss_pred cccCccce
Confidence 34567666
No 9
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=3.59 E-value=3e+02 Score=17.62 Aligned_cols=9 Identities=56% Similarity=1.161 Sum_probs=4.3
Q ss_pred cceeEeeCC
Q psy8401 31 RNFSIYNNR 39 (103)
Q Consensus 31 rnfsiynnr 39 (103)
+.||.|+|+
T Consensus 33 ~G~~~Y~nk 41 (59)
T PF11372_consen 33 KGFSFYNNK 41 (59)
T ss_pred cCCCcccCC
Confidence 345555544
No 10
>PLN03147 ribosomal protein S19; Provisional
Probab=3.08 E-value=5.8e+02 Score=17.64 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=0.0
Q ss_pred EeecceeEeeCCCc
Q psy8401 28 YINRNFSIYNNRNH 41 (103)
Q Consensus 28 yinrnfsiynnrnh 41 (103)
+|...|.|||.+.|
T Consensus 39 ~vg~ti~VyNGk~f 52 (92)
T PLN03147 39 FVDCSVLIYNGKTH 52 (92)
T ss_pred HcCCEEEEeCCCce
Done!