Query psy8401
Match_columns 103
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 17:49:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oxg_Z SOXZ protein; immunoglo 3.0 4.8E+02 0.016 16.5 1.2 11 73-83 27-37 (108)
2 2pka_A Kallikrein A; serine pr 1.8 7.1E+02 0.024 13.2 0.5 6 73-78 73-78 (80)
3 2eoc_A Poly [ADP-ribose] polym 1.5 1.1E+03 0.039 14.7 1.3 17 45-61 41-57 (124)
4 4fgm_A Aminopeptidase N family 1.5 5E+02 0.017 20.4 -0.6 10 93-102 272-281 (597)
5 3bbn_S Ribosomal protein S19; 1.4 9.1E+02 0.031 15.3 0.6 15 28-42 44-58 (92)
6 2r5i_A L1 protein; HPV18, pent 1.3 1.7E+03 0.058 18.2 2.2 14 3-16 316-329 (428)
7 3qra_A AIL, attachment invasio 1.3 1.7E+03 0.057 13.8 1.8 13 26-38 79-91 (157)
8 3r8n_S 30S ribosomal protein S 1.3 1.1E+03 0.038 14.5 0.9 15 28-42 42-56 (79)
9 2kzb_A Autophagy-related prote 1.3 1.3E+03 0.046 15.9 1.3 10 33-42 26-35 (118)
10 1vs6_Z 50S ribosomal protein L 1.3 1.1E+03 0.039 14.1 0.8 11 70-80 37-47 (70)
No 1
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=3.03 E-value=4.8e+02 Score=16.45 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=7.4
Q ss_pred CCCCccCCCCc
Q psy8401 73 NHPMYDNTRNN 83 (103)
Q Consensus 73 nhpmydntrnn 83 (103)
.|||....|-.
T Consensus 27 ~HPMetGl~~d 37 (108)
T 2oxg_Z 27 SHKMESGQRKD 37 (108)
T ss_dssp CCCCBCSCCBC
T ss_pred ECCCccccccC
Confidence 57887766655
No 2
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A
Probab=1.76 E-value=7.1e+02 Score=13.16 Aligned_cols=6 Identities=33% Similarity=0.916 Sum_probs=3.8
Q ss_pred CCCCcc
Q psy8401 73 NHPMYD 78 (103)
Q Consensus 73 nhpmyd 78 (103)
.||.|+
T Consensus 73 ~Hp~y~ 78 (80)
T 2pka_A 73 PHPGFN 78 (80)
T ss_dssp ECTTTT
T ss_pred ECcCCC
Confidence 477665
No 3
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.53 E-value=1.1e+03 Score=14.69 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=13.0
Q ss_pred ccccCCcceeeEEeccc
Q psy8401 45 DNTRNNNRHYSMYINRN 61 (103)
Q Consensus 45 dntrnnnrhysmyinrn 61 (103)
|-.+|+|+-|.|-|-..
T Consensus 41 d~~~n~nrfY~lQll~~ 57 (124)
T 2eoc_A 41 NIENNNNKFYIIQLLQD 57 (124)
T ss_dssp ETTTTEEEEEEEEEEEC
T ss_pred cCCCCceeEEEEEEEec
Confidence 55778899999887643
No 4
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=1.52 E-value=5e+02 Score=20.41 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=5.7
Q ss_pred CcceeecccC
Q psy8401 93 NHSMYHAWNN 102 (103)
Q Consensus 93 nhsmyhawnn 102 (103)
.|.+.|.|+.
T Consensus 272 aHE~~H~W~g 281 (597)
T 4fgm_A 272 CHEYFHSWNI 281 (597)
T ss_dssp HHHHHHTTBT
T ss_pred hhhhheeecc
Confidence 4566666653
No 5
>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=1.43 E-value=9.1e+02 Score=15.32 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=11.4
Q ss_pred EeecceeEeeCCCcc
Q psy8401 28 YINRNFSIYNNRNHS 42 (103)
Q Consensus 28 yinrnfsiynnrnhs 42 (103)
+|...|.|||.+.|-
T Consensus 44 mVG~ti~VhNGK~fv 58 (92)
T 3bbn_S 44 MIGHTIAIHNGREHL 58 (92)
T ss_dssp CTTCCEEEECSSCEE
T ss_pred hcCcEEEEecCceEE
Confidence 466778999988764
No 6
>2r5i_A L1 protein; HPV18, pentamer, structure, type specific epitope, capsid, capsid protein, virion; 3.40A {Human papillomavirus type 18} PDB: 3ofl_A*
Probab=1.34 E-value=1.7e+03 Score=18.19 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=7.5
Q ss_pred ccCCCCcceeeeee
Q psy8401 3 DNTRNNNRHYSMYS 16 (103)
Q Consensus 3 dntrnnnrhysmys 16 (103)
|+||+-|-..|..+
T Consensus 316 DnTRsTNfTIsv~t 329 (428)
T 2r5i_A 316 DTTRSTNLTICAST 329 (428)
T ss_dssp ETTBCCCEEEEEES
T ss_pred cCCCCceEEEEEeC
Confidence 55555555555543
No 7
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=1.33 E-value=1.7e+03 Score=13.80 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=9.2
Q ss_pred eEEeecceeEeeC
Q psy8401 26 SMYINRNFSIYNN 38 (103)
Q Consensus 26 smyinrnfsiynn 38 (103)
+.-|+..|++|--
T Consensus 79 ~y~i~d~~~lY~~ 91 (157)
T 3qra_A 79 VFRINEYVSLYGL 91 (157)
T ss_dssp EEECSSSEEEEEE
T ss_pred EEEeCCceeeEEE
Confidence 5567778888754
No 8
>3r8n_S 30S ribosomal protein S19; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_S 3fih_S* 3j18_S* 2wwl_S 3oar_S 3oaq_S 3ofb_S 3ofa_S 3ofp_S 3ofx_S 3ofy_S 3ofo_S 3r8o_S 4a2i_S 4gd1_S 4gd2_S 2gy9_S 2gyb_S
Probab=1.32 E-value=1.1e+03 Score=14.49 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=11.4
Q ss_pred EeecceeEeeCCCcc
Q psy8401 28 YINRNFSIYNNRNHS 42 (103)
Q Consensus 28 yinrnfsiynnrnhs 42 (103)
+|...|.|||.+.|-
T Consensus 42 mVG~ti~VyNGk~f~ 56 (79)
T 3r8n_S 42 MIGLTIAVHNGRQHV 56 (79)
T ss_dssp TTTCCEEEECSSSEE
T ss_pred HCCCEEEEECCCeeE
Confidence 466778999988764
No 9
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=1.31 E-value=1.3e+03 Score=15.86 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=6.5
Q ss_pred eeEeeCCCcc
Q psy8401 33 FSIYNNRNHS 42 (103)
Q Consensus 33 fsiynnrnhs 42 (103)
|.||||-+--
T Consensus 26 F~lyNntn~~ 35 (118)
T 2kzb_A 26 FQLFNNTNSV 35 (118)
T ss_dssp EEEEECSSSC
T ss_pred EEEecCCcee
Confidence 6677776643
No 10
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=1.29 E-value=1.1e+03 Score=14.10 Aligned_cols=11 Identities=18% Similarity=0.631 Sum_probs=8.0
Q ss_pred CCCCCCCccCC
Q psy8401 70 NNRNHPMYDNT 80 (103)
Q Consensus 70 nnrnhpmydnt 80 (103)
-...||.|-..
T Consensus 37 ~s~~HPFyTG~ 47 (70)
T 1vs6_Z 37 CSKCHPFFTGK 47 (70)
T ss_dssp CSSSCCBCCCC
T ss_pred cCCCCccCcCc
Confidence 36789998754
Done!