Query psy8401
Match_columns 103
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 17:49:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8401.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8401hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d2ea1 b.43.3.1 (A:251-348) E 18.7 27 0.002 20.1 1.8 18 18-35 1-18 (98)
2 d1s0ua1 b.43.3.1 (A:230-347) I 5.9 1.1E+02 0.008 18.1 1.4 14 22-35 4-17 (118)
3 d1kk1a1 b.43.3.1 (A:201-321) I 5.0 1.4E+02 0.01 17.7 1.5 17 19-35 3-19 (121)
4 d1wb1a1 b.43.3.1 (A:180-271) E 4.6 82 0.006 17.6 0.1 17 19-35 1-17 (92)
5 d2c78a1 b.43.3.1 (A:213-312) E 3.8 2.3E+02 0.016 15.7 1.7 17 19-35 3-19 (100)
6 d1jjfa_ c.69.1.2 (A:) Feruloyl 3.1 3.6E+02 0.026 15.0 2.2 24 10-33 23-46 (255)
7 d2qn6a1 b.43.3.1 (A:207-320) I 2.6 3E+02 0.022 15.9 1.4 12 24-35 6-17 (114)
8 d1x8da1 d.58.4.21 (A:1-104) L- 2.5 2.5E+02 0.018 15.9 0.8 8 31-38 39-46 (104)
9 d2gy9s1 d.28.1.1 (S:2-80) Ribo 2.2 2.3E+02 0.017 16.2 0.4 15 28-42 42-56 (79)
10 d1pv1a_ c.69.1.34 (A:) Hypothe 2.1 5.9E+02 0.043 15.9 2.5 22 10-31 15-36 (299)
No 1
>d1d2ea1 b.43.3.1 (A:251-348) Elongation factor Tu (EF-Tu), domain 2 {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=18.74 E-value=27 Score=20.11 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.6
Q ss_pred ccCCCeeeeEEeecceeE
Q psy8401 18 TRNNNRHYSMYINRNFSI 35 (103)
Q Consensus 18 trnnnrhysmyinrnfsi 35 (103)
||..+..+-|+|.+-|+|
T Consensus 1 tR~~d~Pfr~pId~vf~i 18 (98)
T d1d2ea1 1 TRDLEKPFLLPVESVYSI 18 (98)
T ss_dssp CCCTTSCCEEECCEEEEE
T ss_pred CCCCCCCEEEEEEEEEEe
Confidence 577778888999988886
No 2
>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.91 E-value=1.1e+02 Score=18.12 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=10.7
Q ss_pred CeeeeEEeecceeE
Q psy8401 22 NRHYSMYINRNFSI 35 (103)
Q Consensus 22 nrhysmyinrnfsi 35 (103)
+.-.-|+|-|-|+|
T Consensus 4 ~~p~~~~I~r~F~i 17 (118)
T d1s0ua1 4 DATPRMYVARSFDI 17 (118)
T ss_dssp TSCCEEEEEEEECC
T ss_pred CCCcEEEEEeEEcc
Confidence 34467899999987
No 3
>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=5.03 E-value=1.4e+02 Score=17.68 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=13.0
Q ss_pred cCCCeeeeEEeecceeE
Q psy8401 19 RNNNRHYSMYINRNFSI 35 (103)
Q Consensus 19 rnnnrhysmyinrnfsi 35 (103)
|..+.-+-|+|-|-|+|
T Consensus 3 R~~~~p~r~~Idr~F~v 19 (121)
T d1kk1a1 3 RDPNKPPKMLVLRSFDV 19 (121)
T ss_dssp CCTTSCCEEEEEEEECC
T ss_pred CCCCCCcEEEEEEEEEe
Confidence 45566678999999987
No 4
>d1wb1a1 b.43.3.1 (A:180-271) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}
Probab=4.64 E-value=82 Score=17.64 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=11.2
Q ss_pred cCCCeeeeEEeecceeE
Q psy8401 19 RNNNRHYSMYINRNFSI 35 (103)
Q Consensus 19 rnnnrhysmyinrnfsi 35 (103)
|+....+-|.|.+-|+|
T Consensus 1 R~~~~~fr~~I~~vf~i 17 (92)
T d1wb1a1 1 RNTESYFKMPLDHAFPI 17 (92)
T ss_dssp CCSSSCCBCBCSCEECC
T ss_pred CCCCCCEEEEEEEEEEe
Confidence 44556677777777765
No 5
>d2c78a1 b.43.3.1 (A:213-312) Elongation factor Tu (EF-Tu), domain 2 {Thermus thermophilus [TaxId: 274]}
Probab=3.81 E-value=2.3e+02 Score=15.75 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=12.7
Q ss_pred cCCCeeeeEEeecceeE
Q psy8401 19 RNNNRHYSMYINRNFSI 35 (103)
Q Consensus 19 rnnnrhysmyinrnfsi 35 (103)
|..+..+-|+|.+-|++
T Consensus 3 R~~~~p~r~~Id~vf~~ 19 (100)
T d2c78a1 3 RDVDKPFLMPVEDVFTI 19 (100)
T ss_dssp CCCSSCCEEECCEEEEE
T ss_pred CCCCCCEEEEEEEEEEc
Confidence 55566778888888876
No 6
>d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]}
Probab=3.11 E-value=3.6e+02 Score=15.03 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=17.5
Q ss_pred ceeeeeecccCCCeeeeEEeecce
Q psy8401 10 RHYSMYSNTRNNNRHYSMYINRNF 33 (103)
Q Consensus 10 rhysmysntrnnnrhysmyinrnf 33 (103)
...+++|..-+..|++.+|+=.++
T Consensus 23 ~~~~~~S~~~g~~~~~~v~lP~~y 46 (255)
T d1jjfa_ 23 VNISYFSTATNSTRPARVYLPPGY 46 (255)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTC
T ss_pred EEEEEEecCCCCEEEEEEEeCCCC
Confidence 456777877777888888876554
No 7
>d2qn6a1 b.43.3.1 (A:207-320) Initiation factor eIF2 gamma subunit, domain II {Sulfolobus solfataricus [TaxId: 2287]}
Probab=2.65 E-value=3e+02 Score=15.90 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=9.1
Q ss_pred eeeEEeecceeE
Q psy8401 24 HYSMYINRNFSI 35 (103)
Q Consensus 24 hysmyinrnfsi 35 (103)
-.-|+|.|-|+|
T Consensus 6 ~p~~~V~R~F~v 17 (114)
T d2qn6a1 6 KPVMLVIRSFDV 17 (114)
T ss_dssp CCEEEEEEEECC
T ss_pred CceEEEeccccc
Confidence 456888888886
No 8
>d1x8da1 d.58.4.21 (A:1-104) L-rhamnose mutarotase YiiL {Escherichia coli [TaxId: 562]}
Probab=2.47 E-value=2.5e+02 Score=15.91 Aligned_cols=8 Identities=38% Similarity=0.899 Sum_probs=5.4
Q ss_pred cceeEeeC
Q psy8401 31 RNFSIYNN 38 (103)
Q Consensus 31 rnfsiynn 38 (103)
+|+|||-.
T Consensus 39 ~nysIf~~ 46 (104)
T d1x8da1 39 HNYAIYLD 46 (104)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 57788843
No 9
>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}
Probab=2.16 E-value=2.3e+02 Score=16.18 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=11.5
Q ss_pred EeecceeEeeCCCcc
Q psy8401 28 YINRNFSIYNNRNHS 42 (103)
Q Consensus 28 yinrnfsiynnrnhs 42 (103)
+|...|.|||.+.+-
T Consensus 42 ~VG~~i~VyNGk~fv 56 (79)
T d2gy9s1 42 MIGLTIAVHNGRQHV 56 (79)
T ss_dssp GTTCEEEEECSSSEE
T ss_pred HhCcEEEEEeCCeeE
Confidence 567789999987653
No 10
>d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.11 E-value=5.9e+02 Score=15.89 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.2
Q ss_pred ceeeeeecccCCCeeeeEEeec
Q psy8401 10 RHYSMYSNTRNNNRHYSMYINR 31 (103)
Q Consensus 10 rhysmysntrnnnrhysmyinr 31 (103)
.+++.+|..-+..+-+++|+-.
T Consensus 15 ~~~s~~S~~l~~~~~~~VyLP~ 36 (299)
T d1pv1a_ 15 IKLSHNSNSTKTSMNVNIYLPK 36 (299)
T ss_dssp EEEEEECSSSSSEEEEEEEECT
T ss_pred EEEEEECcccCCceEEEEEeCC
Confidence 4678888888888888888754
Done!