RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8401
         (103 letters)



>gnl|CDD|224370 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto
           reductase family [General function prediction only].
          Length = 391

 Score = 30.8 bits (70), Expect = 0.086
 Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 28  YINRNFSIYNNRNHSMYDNTRNNNRHYSMYINRNHS 63
            I   F +YN      +D+       Y+M  N  H 
Sbjct: 309 NIPEIFRLYNLA--VAFDDVDYAKFRYNMLENGGHW 342


>gnl|CDD|133432 cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4;
           Phospho-beta-glucosidase.  Some bacteria simultaneously
           translocate and phosphorylate  disaccharides via the
           phosphoenolpyruvate-dependent phosphotransferase system
           (PEP-PTS). After translocation, these
           phospho-disaccharides may be hydrolyzed by the GH4
           glycoside hydrolases such as the
           phospho-beta-glucosidases. Other organisms (such as
           archaea and Thermotoga maritima ) lack the PEP-PTS
           system, but have several enzymes normally associated
           with the PEP-PTS operon. The 6-phospho-beta-glucosidase
           from Thermotoga maritima hydrolylzes cellobiose
           6-phosphate (6P) into glucose-6P and glucose, in an NAD+
           and Mn2+ dependent fashion. The Escherichia coli
           6-phospho-beta-glucosidase (also called celF) hydrolyzes
           a variety of phospho-beta-glucosides including
           cellobiose-6P, salicin-6P, arbutin-6P, and
           gentobiose-6P. Phospho-beta-glucosidases are part of the
           NAD(P)-binding Rossmann fold superfamily, which includes
           a wide variety of protein families including the
           NAD(P)-binding domains of alcohol dehydrogenases,
           tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate dehydrogenases,
           formate/glycerate dehydrogenases, siroheme synthases,
           6-phosphogluconate dehydrogenases, aminoacid
           dehydrogenases, repressor rex, and NAD-binding potassium
           channel domains, among others.
          Length = 419

 Score = 27.5 bits (62), Expect = 1.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 34  SIYNNRNHSMYDNTRNN 50
           +IYN++      N RNN
Sbjct: 311 AIYNDKGDIHVVNVRNN 327


>gnl|CDD|185274 PRK15376, PRK15376, pathogenicity island 1 effector protein SipA;
           Provisional.
          Length = 670

 Score = 26.2 bits (57), Expect = 3.9
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 3   DNTRNNNRHYSMYSNTRNNNRHYSMYINRNFSIYNNRNHSMYDNTRNNNRHYSMYINRNH 62
           DN+++ N   S   N++ +  + S + N   +I N+R         N+ RH   + + N 
Sbjct: 290 DNSKHINNSRSHVDNSQRHIDN-SNHDNSRKTIDNSRTFI-----DNSQRHGESHHSTNS 343

Query: 63  SMYNTRNNNRNHPMYDNT 80
           S     N + +H   D+T
Sbjct: 344 S-----NVSHSHSRVDST 356


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.124    0.398 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,823,943
Number of extensions: 374569
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 84
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)