RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8401
         (103 letters)



>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
           dependent ATPase, RNA helicase; HET: ANP; 1.91A
           {Saccharomyces cerevisiae S288C}
          Length = 579

 Score = 27.9 bits (62), Expect = 0.59
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 2   YDNTRNNNRHYSMYSNTRNNNRHYSMYINRNFSIYNNRNHSMYDNTRNNNRHYSMYINRN 61
           Y +   NN+ Y    ++  + R    Y NR+ +   + +   +  + NN R +S   + +
Sbjct: 512 YSSRDGNNKSYDYDDDSEISFRGNKNYNNRSQN--RDYDDEPFRRSNNNRRSFS--RSND 567

Query: 62  HSMYNTRNNNR 72
            + Y++RN+N 
Sbjct: 568 KNNYSSRNSNI 578


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 24.8 bits (53), Expect = 7.5
 Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 7/63 (11%)

Query: 10  RHYSMYSNTRNNNRHYSMYINRNF-------SIYNNRNHSMYDNTRNNNRHYSMYINRNH 62
            H     +         ++++  F                   NT    + Y  YI  N 
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 63  SMY 65
             Y
Sbjct: 539 PKY 541


>2yk4_A CMP-N-acetylneuraminate-beta-galactosamide-alpha-
           sialyltransferase; HET: EGC; 1.94A {Neisseria
           meningitidis serogroup B} PDB: 2yk5_A* 2yk6_A* 2yk7_A*
          Length = 327

 Score = 24.3 bits (52), Expect = 9.1
 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 3   DNTRNNNRHYSMYSNTRNNNRHYSMYINRNFSIYNNRNHSMYDNTRNNNRHYSMYINRNH 62
           D T N  +  S   +  + N        R        + S+      ++ HY+++    +
Sbjct: 118 DGTINLIQSSSYLGDEFSVNGTIKRNFARMM----IGDWSIAKTRNASDEHYTIFKGLKN 173

Query: 63  SMYNTRNNNRNHPMYDNTRNNRHYTMHNNRNH 94
            M + R      P++D +              
Sbjct: 174 IMDDGRRKMTYLPLFDASELKAGDETGGTVRI 205


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.124    0.398 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,472,417
Number of extensions: 67002
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 80
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)