RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8401
         (103 letters)



>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
           {Bacillus subtilis [TaxId: 1423]}
          Length = 276

 Score = 25.3 bits (55), Expect = 1.8
 Identities = 9/51 (17%), Positives = 17/51 (33%)

Query: 1   MYDNTRNNNRHYSMYSNTRNNNRHYSMYINRNFSIYNNRNHSMYDNTRNNN 51
           ++       R  S  ++    + H S  ++   +I  N    M     NN 
Sbjct: 128 IFSQCDMITREQSSENSEIKIDDHASYIVDLARAIAYNTGERMLLIVENNG 178


>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human
           papillomavirus type 16 [TaxId: 333760]}
          Length = 455

 Score = 23.5 bits (51), Expect = 6.6
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 45  DNTRNNNRHYSMYINRNHSMYNTRN 69
           D TR+ N      I+ + + Y   N
Sbjct: 316 DTTRSTNMSLCAAISTSETTYKNTN 340


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.124    0.398 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 378,972
Number of extensions: 14994
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 55
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)