BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8405
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4Z|A Chain A, Hp1 Chromo Shadow Domain In Complex With Pxvxl Motif Of
Caf- 1
pdb|1S4Z|B Chain B, Hp1 Chromo Shadow Domain In Complex With Pxvxl Motif Of
Caf- 1
Length = 75
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
G R L E IIGAT G +L+ W+ SDEADL+PA+ K PQ +I F+E+ L +
Sbjct: 11 GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 70
Query: 214 S 214
S
Sbjct: 71 S 71
>pdb|3Q6S|A Chain A, The Crystal Structure Of The Heterochromatin Protein 1
Beta Chromoshadow Domain Complexed With A Peptide From
Shugoshin 1
pdb|3Q6S|B Chain B, The Crystal Structure Of The Heterochromatin Protein 1
Beta Chromoshadow Domain Complexed With A Peptide From
Shugoshin 1
pdb|3Q6S|C Chain C, The Crystal Structure Of The Heterochromatin Protein 1
Beta Chromoshadow Domain Complexed With A Peptide From
Shugoshin 1
pdb|3Q6S|D Chain D, The Crystal Structure Of The Heterochromatin Protein 1
Beta Chromoshadow Domain Complexed With A Peptide From
Shugoshin 1
Length = 78
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV-- 211
G R L E IIGAT G +L+ W+ SDEADL+PA+ K PQ +I F+E+ L
Sbjct: 5 GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 64
Query: 212 -FPSE 215
+PSE
Sbjct: 65 SYPSE 69
>pdb|3P7J|A Chain A, Drosophila Hp1a Chromo Shadow Domain
pdb|3P7J|B Chain B, Drosophila Hp1a Chromo Shadow Domain
Length = 87
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
G DR L E+I+GA+ G +L+ ++G D+A+++P+ + K P+ +I F+E+ L +
Sbjct: 21 GFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSWY 80
Query: 214 SENNASK 220
S+N K
Sbjct: 81 SDNEDKK 87
>pdb|3I3C|A Chain A, Crystal Structural Of Cbx5 Chromo Shadow Domain
pdb|3I3C|B Chain B, Crystal Structural Of Cbx5 Chromo Shadow Domain
pdb|3I3C|C Chain C, Crystal Structural Of Cbx5 Chromo Shadow Domain
pdb|3I3C|D Chain D, Crystal Structural Of Cbx5 Chromo Shadow Domain
Length = 75
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 149 NDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQ 208
ND+ G +R L E+IIGAT G +L+ W+ +DEADL+ A+ K PQ +I F+E+
Sbjct: 13 NDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEE 72
Query: 209 HLV 211
L
Sbjct: 73 RLT 75
>pdb|2FMM|A Chain A, Crystal Structure Of Emsy-Hp1 Complex
pdb|2FMM|B Chain B, Crystal Structure Of Emsy-Hp1 Complex
pdb|2FMM|C Chain C, Crystal Structure Of Emsy-Hp1 Complex
pdb|2FMM|D Chain D, Crystal Structure Of Emsy-Hp1 Complex
Length = 74
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 37/61 (60%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
G R L E IIGAT G +L+ W+ SDEADL+PA+ K PQ +I F+E+ L +
Sbjct: 11 GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 70
Query: 214 S 214
S
Sbjct: 71 S 71
>pdb|1DZ1|A Chain A, Mouse Hp1 (M31) C Terminal (Shadow Chromo) Domain
pdb|1DZ1|B Chain B, Mouse Hp1 (M31) C Terminal (Shadow Chromo) Domain
Length = 70
Score = 51.6 bits (122), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 36/59 (61%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVF 212
G R L E IIGAT G +L+ W+ SDEADL+PA+ K PQ +I F+E+ L +
Sbjct: 11 GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTW 69
>pdb|3KUP|A Chain A, Crystal Structure Of The Cbx3 Chromo Shadow Domain
pdb|3KUP|B Chain B, Crystal Structure Of The Cbx3 Chromo Shadow Domain
pdb|3KUP|C Chain C, Crystal Structure Of The Cbx3 Chromo Shadow Domain
pdb|3KUP|D Chain D, Crystal Structure Of The Cbx3 Chromo Shadow Domain
Length = 65
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 150 DMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQH 209
D G R L E IIGAT G +L+ W+ SDEADL+ A+ K PQ +I F+E+
Sbjct: 4 DKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEER 63
Query: 210 L 210
L
Sbjct: 64 L 64
>pdb|1E0B|A Chain A, Chromo Shadow Domain From Fission Yeast Swi6 Protein.
pdb|1E0B|B Chain B, Chromo Shadow Domain From Fission Yeast Swi6 Protein
Length = 68
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 190 PAEICKRKYPQPLIRFFEQHLVF 212
P+ I +K PQ +++F+E HL F
Sbjct: 42 PSTITNKKCPQKMLQFYESHLTF 64
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 129 YKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADL 188
Y G N+ + D+V K K+L+ + + N E++ T+ PA++ W+ +
Sbjct: 307 YVGVFRNHDIADVVDKAKVLSLAAVQLHGN--EEQLYIDTLREALPAHVAIWKALSVGET 364
Query: 189 LPAE 192
LPA
Sbjct: 365 LPAR 368
>pdb|2KZH|A Chain A, Three-Dimensional Structure Of A Truncated
Phosphoribosylanthranilate Isomerase (Residues 255-384)
From Escherichia Coli
Length = 140
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 129 YKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADL 188
Y G N+ + D+V K K+L+ + + N E++ T+ PA++ W+ +
Sbjct: 54 YVGVFRNHDIADVVDKAKVLSLAAVQLHGN--EEQLYIDTLREALPAHVAIWKALSVGET 111
Query: 189 LPAE 192
LPA
Sbjct: 112 LPAR 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,008,279
Number of Sequences: 62578
Number of extensions: 221913
Number of successful extensions: 283
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 10
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)