BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8405
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61686|CBX5_MOUSE Chromobox protein homolog 5 OS=Mus musculus GN=Cbx5 PE=1 SV=1
Length = 191
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 132 SQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLL 189
S +NS +DI K+K ND+ G +R L E+IIGAT G +L+ W+ +DEADL+
Sbjct: 92 SSFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLV 151
Query: 190 PAEICKRKYPQPLIRFFEQHLVF 212
A+ K PQ +I F+E+ L +
Sbjct: 152 LAKEANVKCPQIVIAFYEERLTW 174
>sp|P45973|CBX5_HUMAN Chromobox protein homolog 5 OS=Homo sapiens GN=CBX5 PE=1 SV=1
Length = 191
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 123 EPEEVAYKGSQHNNSVNDIVVKEKL--LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTW 180
E E + S +NS +DI K+K ND+ G +R L E+IIGAT G +L+ W
Sbjct: 83 EKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKW 142
Query: 181 EGSDEADLLPAEICKRKYPQPLIRFFEQHLVF 212
+ +DEADL+ A+ K PQ +I F+E+ L +
Sbjct: 143 KDTDEADLVLAKEANVKCPQIVIAFYEERLTW 174
>sp|P29227|HP1_DROVI Heterochromatin protein 1 OS=Drosophila virilis GN=Su(var)205 PE=3
SV=1
Length = 213
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
G DR L E+I+GA+ G +L+ ++G D+A+++P+ + K PQ +IRF+E+ L +
Sbjct: 149 GFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSTVANVKIPQMVIRFYEERLSWY 208
Query: 214 SEN 216
S+N
Sbjct: 209 SDN 211
>sp|P83917|CBX1_MOUSE Chromobox protein homolog 1 OS=Mus musculus GN=Cbx1 PE=1 SV=1
Length = 185
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV-- 211
G R L E IIGAT G +L+ W+ SDEADL+PA+ K PQ +I F+E+ L
Sbjct: 112 GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 171
Query: 212 -FPSE 215
+PSE
Sbjct: 172 SYPSE 176
>sp|P83916|CBX1_HUMAN Chromobox protein homolog 1 OS=Homo sapiens GN=CBX1 PE=1 SV=1
Length = 185
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV-- 211
G R L E IIGAT G +L+ W+ SDEADL+PA+ K PQ +I F+E+ L
Sbjct: 112 GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 171
Query: 212 -FPSE 215
+PSE
Sbjct: 172 SYPSE 176
>sp|P05205|HP1_DROME Heterochromatin protein 1 OS=Drosophila melanogaster GN=Su(var)205
PE=1 SV=2
Length = 206
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%)
Query: 152 NLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV 211
+ G DR L E+I+GA+ G +L+ ++G D+A+++P+ + K P+ +I F+E+ L
Sbjct: 140 STGFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLS 199
Query: 212 FPSEN 216
+ S+N
Sbjct: 200 WYSDN 204
>sp|Q5R6X7|CBX3_PONAB Chromobox protein homolog 3 OS=Pongo abelii GN=CBX3 PE=2 SV=1
Length = 183
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
G R L E IIGAT G +L+ W+ SDEADL+ A+ K PQ +I F+E+ L +
Sbjct: 116 GFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWH 175
Query: 214 S 214
S
Sbjct: 176 S 176
>sp|Q13185|CBX3_HUMAN Chromobox protein homolog 3 OS=Homo sapiens GN=CBX3 PE=1 SV=4
Length = 183
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
G R L E IIGAT G +L+ W+ SDEADL+ A+ K PQ +I F+E+ L +
Sbjct: 116 GFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWH 175
Query: 214 S 214
S
Sbjct: 176 S 176
>sp|P23198|CBX3_MOUSE Chromobox protein homolog 3 OS=Mus musculus GN=Cbx3 PE=1 SV=2
Length = 183
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%)
Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
G R L E IIGAT G +L+ W+ SDEADL+ A+ K PQ +I F+E+ L +
Sbjct: 116 GFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWH 175
Query: 214 S 214
S
Sbjct: 176 S 176
>sp|Q6QHE0|MATK_BRAOL Maturase K OS=Brassica oleracea GN=matK PE=3 SV=2
Length = 502
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 122 VEPEEVAYKGSQHNNSVNDIVVKEKLL------NDMNLGIDRNLPVEEIIGATIE----- 170
+ + + + G + +N +VV+ +LL +++ + +D N+P+ IIG+ +
Sbjct: 320 LSKDNLEFLGYLSSLRLNPLVVRSQLLENSFLIDNVRIKLDSNIPISSIIGSLAKDKFCN 379
Query: 171 -VGFPAYLVTWEGSDEADLL--PAEICK 195
+G P TW S ++D+L IC+
Sbjct: 380 VLGHPISKATWTDSSDSDILNRFVRICR 407
>sp|Q6QHD9|MATK_BRACM Maturase K OS=Brassica campestris GN=matK PE=3 SV=2
Length = 502
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 122 VEPEEVAYKGSQHNNSVNDIVVKEKLL------NDMNLGIDRNLPVEEIIGATIE----- 170
+ + + + G + +N +VV+ ++L +++ + +D N+P+ IIG+ +
Sbjct: 320 LSKDNLEFLGYLSSLRLNPLVVRSQMLENSFLIDNVRIKLDSNIPISSIIGSLAKDKFCN 379
Query: 171 -VGFPAYLVTWEGSDEADLL--PAEICK 195
+G P TW S ++D+L IC+
Sbjct: 380 VLGHPISKATWTDSSDSDILNRFVRICR 407
>sp|A5N2Z2|GLGA_CLOK5 Glycogen synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM
555 / NCIMB 10680) GN=glgA PE=3 SV=1
Length = 475
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 117 YPLPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEII 165
Y + E + + ++ NN N ++ K K+ ND+NL I+ N+PV II
Sbjct: 251 YDIYNPEKDNMIFRNYNKNNLRNKMINKLKIQNDLNLDINENVPVLAII 299
>sp|B9DWP3|GLGA_CLOK1 Glycogen synthase OS=Clostridium kluyveri (strain NBRC 12016)
GN=glgA PE=3 SV=1
Length = 475
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 117 YPLPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEII 165
Y + E + + ++ NN N ++ K K+ ND+NL I+ N+PV II
Sbjct: 251 YDIYNPEKDNMIFRNYNKNNLRNKMINKLKIQNDLNLDINENVPVLAII 299
>sp|P40381|SWI6_SCHPO Chromatin-associated protein swi6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=swi6 PE=1 SV=1
Length = 328
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 190 PAEICKRKYPQPLIRFFEQHLVF 212
P+ I +K PQ +++F+E HL F
Sbjct: 302 PSTITNKKCPQKMLQFYESHLTF 324
>sp|A4QKH3|MATK_CAPBU Maturase K OS=Capsella bursa-pastoris GN=matK PE=3 SV=2
Length = 504
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 122 VEPEEVAYKGSQHNNSVNDIVVKEKLL------NDMNLGIDRNLPVEEIIGATIE----- 170
+ + + + G + +N +VV+ ++L +++ + +D +P+ IIG+ +
Sbjct: 322 LSKDNLEFLGYLSSLRLNPLVVRSQMLENSFLIDNVRINLDSKIPISAIIGSLAKDKFCN 381
Query: 171 -VGFPAYLVTWEGSDEADLL--PAEICK 195
+G P TW S ++D+L IC+
Sbjct: 382 VLGHPISKATWTDSSDSDILNRFVRICR 409
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 30.8 bits (68), Expect = 8.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 155 IDRNLPVEE--IIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVF 212
+DR+L V + I+G + +G ++ + +GS D+LP + C ++ P ++H +
Sbjct: 1458 VDRDLSVSDSIIVGKPVPLGTTSFDLLLDGSISNDILPPQRCVKRGMGPNFHTAKRHHLV 1517
Query: 213 P 213
P
Sbjct: 1518 P 1518
>sp|A4QKR2|MATK_CRUWA Maturase K OS=Crucihimalaya wallichii GN=matK PE=3 SV=2
Length = 504
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 122 VEPEEVAYKGSQHNNSVNDIVVKEKLL------NDMNLGIDRNLPVEEIIGATIE----- 170
+ + + + G + +N +VV+ ++L +++ + +D +P+ IIG+ +
Sbjct: 322 LSKDNLEFLGYLSSLRLNPLVVRSQMLENSFLIDNVRIKLDSKIPISSIIGSLAKDKFCN 381
Query: 171 -VGFPAYLVTWEGSDEADLL--PAEICK 195
+G P TW S ++D+L IC+
Sbjct: 382 VLGHPISKATWTDSSDSDILNRFVRICR 409
>sp|Q9GF55|MATK_CARAN Maturase K OS=Cardamine amara GN=matK PE=3 SV=1
Length = 504
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 85 KRKYPLANLIQPTSNHTPDGTVVKKKRGRKRKYPLPTVEPEEVAYKGSQHNNSVNDIVVK 144
K KY NL Q + V K+ K + + + G + +N +VV+
Sbjct: 295 KWKYYFVNLWQCYFSVWFQSQKVHIKQLSK----------DNLEFLGYLSSLRLNPLVVR 344
Query: 145 EKLL------NDMNLGIDRNLPVEEIIGATIE------VGFPAYLVTWEGSDEADLL--P 190
++L +++ + +D +P+ IIG+ + +G P V W S ++D+L
Sbjct: 345 SQMLENSFLIDNVRIKLDSKIPISSIIGSLAKDKFCNVLGHPISKVIWTHSSDSDILNRF 404
Query: 191 AEICK 195
IC+
Sbjct: 405 VRICR 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,126,732
Number of Sequences: 539616
Number of extensions: 4209836
Number of successful extensions: 9179
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 9133
Number of HSP's gapped (non-prelim): 84
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)