Query psy8405
Match_columns 225
No_of_seqs 120 out of 218
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 17:55:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00300 ChSh Chromo Shadow 99.9 9.5E-26 2.1E-30 162.2 5.2 61 153-214 1-61 (61)
2 PF01393 Chromo_shadow: Chromo 99.9 4.2E-25 9.2E-30 158.1 5.0 58 157-214 1-58 (58)
3 cd00034 ChSh Chromo Shadow Dom 99.8 2.8E-21 6.1E-26 136.3 5.9 53 160-213 1-54 (54)
4 KOG1911|consensus 99.7 3.3E-17 7.2E-22 144.9 4.1 146 41-219 71-223 (270)
5 smart00298 CHROMO Chromatin or 98.3 1.6E-06 3.5E-11 58.0 4.9 49 159-208 2-53 (55)
6 PF00385 Chromo: Chromo (CHRro 97.7 4.5E-05 9.9E-10 52.1 4.0 49 159-207 1-54 (55)
7 cd00024 CHROMO Chromatin organ 97.5 0.00012 2.7E-09 49.1 4.1 47 159-206 3-53 (55)
8 PF00385 Chromo: Chromo (CHRro 96.3 0.00091 2E-08 45.6 -0.3 27 41-67 26-54 (55)
9 KOG1911|consensus 96.2 0.003 6.5E-08 56.4 2.7 57 158-214 48-105 (270)
10 cd00024 CHROMO Chromatin organ 94.2 0.023 4.9E-07 38.0 1.1 27 41-67 27-54 (55)
11 KOG2748|consensus 93.1 0.054 1.2E-06 51.7 2.0 27 42-68 34-60 (369)
12 KOG2748|consensus 92.4 0.044 9.5E-07 52.3 0.4 51 158-208 10-60 (369)
13 smart00298 CHROMO Chromatin or 92.1 0.04 8.6E-07 36.6 -0.2 27 41-67 25-52 (55)
14 PF14061 Mtf2_C: Polycomb-like 51.8 18 0.00039 26.0 2.9 21 163-183 27-48 (50)
15 KOG0384|consensus 46.2 15 0.00032 40.7 2.5 49 159-208 286-336 (1373)
16 PF08940 DUF1918: Domain of un 32.6 37 0.0008 25.0 2.1 27 163-189 24-50 (58)
17 PF11717 Tudor-knot: RNA bindi 26.2 1E+02 0.0022 21.3 3.3 34 160-193 17-52 (55)
No 1
>smart00300 ChSh Chromo Shadow Domain.
Probab=99.92 E-value=9.5e-26 Score=162.22 Aligned_cols=61 Identities=38% Similarity=0.674 Sum_probs=59.3
Q ss_pred CCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCC
Q psy8405 153 LGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS 214 (225)
Q Consensus 153 ~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~ 214 (225)
.||+||+++|+|||+++.+|+|+|||+|+| +++++||+.+||.+|||+||+|||+||+|++
T Consensus 1 ~gf~~g~~~e~Ivg~~d~~G~l~flikwk~-~~~~lVp~~~~~~k~P~~vI~FYE~~l~~~~ 61 (61)
T smart00300 1 KDEERGKSWEDIVGITKDDGELTFLIKWKD-DAASLVPNKEANVKCPQKVIRFYESHLTFQS 61 (61)
T ss_pred CccccCCCHHHHhceecCCCeEEEEEEEeC-CcEEEEEHHHHHHHChHHHHHHHHHhCccCC
Confidence 389999999999999999999999999999 9999999999999999999999999999974
No 2
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=99.91 E-value=4.2e-25 Score=158.07 Aligned_cols=58 Identities=45% Similarity=0.775 Sum_probs=55.6
Q ss_pred CCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCC
Q psy8405 157 RNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS 214 (225)
Q Consensus 157 RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~ 214 (225)
||+++|+|||+++.+|+|+|||+||+++++++||+.+||.+|||+||+|||+||+|++
T Consensus 1 rgl~~E~Ivg~~d~~G~l~~likwk~~~~~~~v~~~~~~~k~Pq~vI~FYE~~l~f~~ 58 (58)
T PF01393_consen 1 RGLEWEKIVGATDTNGELMFLIKWKNSGEKDLVPSKEANEKCPQKVIKFYESHLVFKS 58 (58)
T ss_dssp GT-TEEEEEEEEECTSSEEEEEEETTSSSEEEEEHHHHHHHSHHHHHHHHHHTCEEEE
T ss_pred CCCChHHHheeecCCCcEEEEEEECCCCceEEeeHHHHHHHCcHHHHHHHHHHeeecC
Confidence 7999999999999999999999999999999999999999999999999999999974
No 3
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=99.84 E-value=2.8e-21 Score=136.35 Aligned_cols=53 Identities=32% Similarity=0.584 Sum_probs=50.6
Q ss_pred cccceeeeeeeC-CceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCC
Q psy8405 160 PVEEIIGATIEV-GFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213 (225)
Q Consensus 160 epEkIIGatd~~-GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~ 213 (225)
.+++|+|+++.+ |+|+|||+|+| +++++||+++||.+|||+||+|||+||+|+
T Consensus 1 ~~~~I~gat~~~~g~l~fl~kwk~-~~~~lVp~~~~~~k~P~~vI~FYE~~l~~~ 54 (54)
T cd00034 1 LVKPISGASKSDDGELTFLAKWKD-GQASLVPNKELNVKCPLLVISFYEEHLTYN 54 (54)
T ss_pred CceEEEEEEEcCCCeEEEEEEEeC-CeEEEEEHHHHHhhCcHHHHHHHHHhcccC
Confidence 378999999877 99999999999 999999999999999999999999999996
No 4
>KOG1911|consensus
Probab=99.67 E-value=3.3e-17 Score=144.87 Aligned_cols=146 Identities=22% Similarity=0.193 Sum_probs=99.9
Q ss_pred cccCCCCCCCCCCC-CCCchHHHHhhhcCCCcCCCCccc-ccccCCCCcCccccccCCCCCCCCCcceeeeecccccCCC
Q psy8405 41 NNQGLKSGDHENIH-NVNTSKIGIKTEENPTLDGGNIKI-PKKRGRKRKYPLANLIQPTSNHTPDGTVVKKKRGRKRKYP 118 (225)
Q Consensus 41 ~~~~~~~ntWEp~~-nL~c~~lI~~~e~~~~~~~~~~k~-~~kr~~k~~~~~~~~~q~~~~~~~~~~~~~k~~~~k~~~p 118 (225)
+.|.--+|||||++ |++|++||.+|+.... ..++. ..++-. +...... .. .+ -
T Consensus 71 ~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~---~~k~~~~~~~~~----~~~~~~~------~~--------~~----~ 125 (270)
T KOG1911|consen 71 KGYPDPDNTWEPEEHNLDCPELIDEFEKSQK---KLKKKSKLKRTS----RSSSNKA------KE--------ET----S 125 (270)
T ss_pred CCCCCccccCCchhhccccHHHHHHHHHHhc---ccCccccccccc----ccccccc------cc--------cc----c
Confidence 45667799999999 9999999999999433 22222 111110 0100000 00 00 0
Q ss_pred CCCCChhhhhhhcccCCCCcchhHHHHHhhhccCCCCCCCCcccceeeeeeeCCceEEEEEeCCC-----CCcceeehhH
Q psy8405 119 LPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGS-----DEADLLPAEI 193 (225)
Q Consensus 119 ~~~s~~~~~~~~~~~~~nses~~~kKk~e~~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~-----de~DlVpA~e 193 (225)
.+.+.. ++.++......++........+|++|+.+.+|+++++.+|.++||++|..+ +.++++|+.+
T Consensus 126 ~S~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (270)
T KOG1911|consen 126 RSTSDE--------KSKSSPKKSVKKKKEKSKKSKGFPRGKEGKRIAGAKKSSGKLMFLMKSSKELSEPKDEADLTPAKE 197 (270)
T ss_pred cccccc--------ccccccccccccccchhcccccccccccchhhhccccCCcchhhhhcCCccccccCCccccccccc
Confidence 011111 011111112223344557789999999999999999999999999999997 8899999999
Q ss_pred HHhhCCHHHHHHHHhhccCCCCCchh
Q psy8405 194 CKRKYPQPLIRFFEQHLVFPSENNAS 219 (225)
Q Consensus 194 aneKcPQmVIkFYEerL~w~~~~~~~ 219 (225)
++.+||++||+|||.++.|+....+.
T Consensus 198 ~~~~~p~~~~~~~E~~~~~~~~~~~~ 223 (270)
T KOG1911|consen 198 KSSKCPQVVIDFYEERLEDQETPKDE 223 (270)
T ss_pred ccccCCcchhHHHHhccccccccccc
Confidence 99999999999999999999866654
No 5
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=98.27 E-value=1.6e-06 Score=58.01 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=43.2
Q ss_pred Ccccceeeee-eeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405 159 LPVEEIIGAT-IEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 159 LepEkIIGat-d~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe 208 (225)
+.+++|++.. ..+|.+.|||+|+|.+. ..++|+..+.. ||.+|.+|++.
T Consensus 2 ~~v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~-~~~~v~~~~~~ 53 (55)
T smart00298 2 YEVEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLN-CSKKLDNYKKK 53 (55)
T ss_pred cchheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHH-HHHHHHHHHHh
Confidence 4589999998 88899999999999765 57999988887 99999999985
No 6
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.72 E-value=4.5e-05 Score=52.08 Aligned_cols=49 Identities=29% Similarity=0.447 Sum_probs=39.8
Q ss_pred CcccceeeeeeeCCce---EEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHH
Q psy8405 159 LPVEEIIGATIEVGFP---AYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFE 207 (225)
Q Consensus 159 LepEkIIGatd~~GeL---~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYE 207 (225)
++|++||+....++.. .|||||+|... ..++|...+...+|.+|-+|.+
T Consensus 1 ~~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 1 YEVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred CEEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 3689999998766666 99999999754 4699999888888999777654
No 7
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.55 E-value=0.00012 Score=49.08 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=38.5
Q ss_pred CcccceeeeeeeC--CceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHH
Q psy8405 159 LPVEEIIGATIEV--GFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFF 206 (225)
Q Consensus 159 LepEkIIGatd~~--GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFY 206 (225)
+++++|++..... |.+.|||+|+|.. ...++|+..+... +.+|-+|.
T Consensus 3 ~~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-~~~i~~~~ 53 (55)
T cd00024 3 YEVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDC-KELIDEFK 53 (55)
T ss_pred ceEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCch-HHHHHHHH
Confidence 4679999998776 8999999999987 6679999988765 67776664
No 8
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=96.28 E-value=0.00091 Score=45.63 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.7
Q ss_pred cccCCCCCCCCCCCCCC--chHHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNVN--TSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~--c~~lI~~~e~ 67 (225)
.+++..++||||+++|. |++||.+|++
T Consensus 26 ~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 26 KGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp TTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred CCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 46778899999999998 4899999986
No 9
>KOG1911|consensus
Probab=96.25 E-value=0.003 Score=56.36 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=48.7
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHH-HhhCCHHHHHHHHhhccCCC
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEIC-KRKYPQPLIRFFEQHLVFPS 214 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~ea-neKcPQmVIkFYEerL~w~~ 214 (225)
.+.+|+|+.-...+|.+-|||+|+|....+--+..+. +..||.+|.+|.+++-.-+.
T Consensus 48 ~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~k~ 105 (270)
T KOG1911|consen 48 EYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKLKK 105 (270)
T ss_pred hhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhcccCc
Confidence 3568888888889999999999999998887776666 88999999999999877664
No 10
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=94.16 E-value=0.023 Score=37.96 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=23.3
Q ss_pred cccCCCCCCCCCCCCCCch-HHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNVNTS-KIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~-~lI~~~e~ 67 (225)
.+++..++||||+++|.+. ++|.+|++
T Consensus 27 ~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 27 KGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred CCCCCccCccccHHHhCchHHHHHHHHh
Confidence 4566779999999999985 99999986
No 11
>KOG2748|consensus
Probab=93.06 E-value=0.054 Score=51.71 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=23.7
Q ss_pred ccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405 42 NQGLKSGDHENIHNVNTSKIGIKTEEN 68 (225)
Q Consensus 42 ~~~~~~ntWEp~~nL~c~~lI~~~e~~ 68 (225)
-+--|-|||||++|+==+-||++|++.
T Consensus 34 GWs~kyNTWEPEENILDpRLi~AFe~r 60 (369)
T KOG2748|consen 34 GWSQKYNTWEPEENILDPRLIAAFEQR 60 (369)
T ss_pred ccccccCccCccccccCHHHHHHHHhh
Confidence 455678999999999999999999984
No 12
>KOG2748|consensus
Probab=92.40 E-value=0.044 Score=52.29 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=42.9
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHh
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEe 208 (225)
=+.+|.||--....|.+-|||||+|-+..---..-+.|+.-|.+++.|.+.
T Consensus 10 VfAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILDpRLi~AFe~r 60 (369)
T KOG2748|consen 10 VFAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILDPRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHHHhhccceEEEEEecccccccCccCccccccCHHHHHHHHhh
Confidence 367899998888899999999999987765566667799999999998764
No 13
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=92.11 E-value=0.04 Score=36.56 Aligned_cols=27 Identities=15% Similarity=-0.017 Sum_probs=23.2
Q ss_pred cccCCCCCCCCCCCCCC-chHHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNVN-TSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~-c~~lI~~~e~ 67 (225)
.++.-.++||+|.++|. |+++|.+|..
T Consensus 25 ~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 25 KGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred CCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 34556679999999999 9999999987
No 14
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=51.77 E-value=18 Score=26.00 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=16.4
Q ss_pred ceeeee-eeCCceEEEEEeCCC
Q psy8405 163 EIIGAT-IEVGFPAYLVTWEGS 183 (225)
Q Consensus 163 kIIGat-d~~GeL~FLVKWKg~ 183 (225)
.|++-. ..+|.+.|||.|.|.
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~ 48 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGA 48 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCc
Confidence 355443 688999999999985
No 15
>KOG0384|consensus
Probab=46.22 E-value=15 Score=40.73 Aligned_cols=49 Identities=29% Similarity=0.439 Sum_probs=36.5
Q ss_pred CcccceeeeeeeCCceEEEEEeCC--CCCcceeehhHHHhhCCHHHHHHHHh
Q psy8405 159 LPVEEIIGATIEVGFPAYLVTWEG--SDEADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 159 LepEkIIGatd~~GeL~FLVKWKg--~de~DlVpA~eaneKcPQmVIkFYEe 208 (225)
..||+||+.. .+.+..|||||.+ .+++.|=.+..+...++..+=.|+..
T Consensus 286 ~~VdRIia~~-~~~d~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~R 336 (1373)
T KOG0384|consen 286 VIVDRIIAEQ-TSKDPEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSR 336 (1373)
T ss_pred hhhhhhhhcc-cCCCceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhh
Confidence 5899999864 4455999999999 44666777777777777776666554
No 16
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=32.58 E-value=37 Score=25.04 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=18.1
Q ss_pred ceeeeeeeCCceEEEEEeCCCCCccee
Q psy8405 163 EIIGATIEVGFPAYLVTWEGSDEADLL 189 (225)
Q Consensus 163 kIIGatd~~GeL~FLVKWKg~de~DlV 189 (225)
.|+.+...+|.--|+|+|.+.+...+|
T Consensus 24 eIveV~g~dG~PPY~VRw~D~Ghe~lv 50 (58)
T PF08940_consen 24 EIVEVRGPDGSPPYLVRWDDTGHESLV 50 (58)
T ss_dssp EEEE-S-SSS-S-EEEEETTTTEEEEE
T ss_pred EEEEEECCCCCCCEEEEecCCCcEEEE
Confidence 488888899999999999986555544
No 17
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=26.19 E-value=1e+02 Score=21.34 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=25.8
Q ss_pred cccceeeeeeeCCceEEEEEeCCCCCc--ceeehhH
Q psy8405 160 PVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEI 193 (225)
Q Consensus 160 epEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~e 193 (225)
-+-+|+......|...|+|.|.|.+.- ++||...
T Consensus 17 y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~ 52 (55)
T PF11717_consen 17 YEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESR 52 (55)
T ss_dssp EEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTT
T ss_pred EEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHH
Confidence 356788888888999999999997643 4676553
Done!