Query psy8405
Match_columns 225
No_of_seqs 120 out of 218
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 17:55:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q6s_A Chromobox protein homol 100.0 8.1E-30 2.8E-34 191.0 5.1 72 150-221 1-72 (78)
2 2fmm_A Chromobox protein homol 100.0 5.9E-29 2E-33 184.1 6.4 70 148-217 5-74 (74)
3 3p7j_A Heterochromatin protein 99.9 3.4E-28 1.1E-32 186.2 7.0 66 149-214 16-81 (87)
4 3kup_A Chromobox protein homol 99.9 5.3E-28 1.8E-32 175.1 5.5 63 149-211 3-65 (65)
5 3i3c_A Chromobox protein homol 99.9 2.6E-27 9E-32 176.5 4.6 64 148-211 12-75 (75)
6 1e0b_A SWI6 protein; chromatin 99.8 2.7E-21 9.4E-26 141.7 5.1 56 159-215 11-67 (68)
7 2h1e_A Chromo domain protein 1 98.8 2.1E-10 7.2E-15 96.2 -2.6 113 41-207 54-176 (177)
8 3fdt_A Chromobox protein homol 98.5 4.1E-08 1.4E-12 68.8 3.4 50 159-210 4-55 (59)
9 3f2u_A Chromobox protein homol 98.5 8.5E-08 2.9E-12 66.3 4.5 49 159-209 3-53 (55)
10 3mts_A Histone-lysine N-methyl 98.5 1.2E-07 4.1E-12 67.9 4.5 48 160-209 2-51 (64)
11 3g7l_A Chromo domain-containin 98.4 1.6E-07 5.4E-12 66.3 4.4 50 158-209 7-59 (61)
12 3lwe_A M-phase phosphoprotein 98.4 3.9E-07 1.3E-11 64.4 5.8 51 158-209 4-56 (62)
13 3i91_A Chromobox protein homol 98.4 2.6E-07 9E-12 63.5 3.9 47 159-207 4-52 (54)
14 1ap0_A Modifier protein 1; chr 98.4 3.3E-07 1.1E-11 66.8 4.4 55 158-214 13-69 (73)
15 3h91_A Chromobox protein homol 98.3 3.1E-07 1.1E-11 63.2 3.6 47 159-207 4-52 (54)
16 1ap0_A Modifier protein 1; chr 98.2 4.1E-07 1.4E-11 66.3 2.7 30 41-70 36-65 (73)
17 1q3l_A Heterochromatin protein 98.2 7.9E-07 2.7E-11 64.8 3.8 50 158-209 16-67 (69)
18 1pfb_A Polycomb protein; chrom 98.2 1.2E-06 4.1E-11 60.4 4.0 48 159-208 4-53 (55)
19 3f2u_A Chromobox protein homol 98.2 2.7E-07 9.2E-12 63.7 0.4 28 41-68 25-52 (55)
20 1pdq_A Polycomb protein; methy 98.2 1.3E-06 4.3E-11 64.3 3.9 49 158-208 20-70 (72)
21 3fdt_A Chromobox protein homol 98.1 2.3E-07 7.8E-12 65.0 -0.6 30 41-70 26-55 (59)
22 2rso_A Chromatin-associated pr 98.1 6.2E-06 2.1E-10 62.7 7.2 52 157-209 29-85 (92)
23 2dnv_A Chromobox protein homol 98.1 1.3E-06 4.4E-11 62.1 3.2 49 158-208 10-60 (64)
24 2k1b_A Chromobox protein homol 98.1 1.4E-06 4.7E-11 64.2 3.4 49 158-208 21-71 (73)
25 3mts_A Histone-lysine N-methyl 98.1 1.5E-07 5.2E-12 67.4 -1.8 30 41-70 23-52 (64)
26 1g6z_A CLR4 protein; transfera 98.1 5.3E-07 1.8E-11 65.0 0.2 30 41-70 33-63 (70)
27 1pfb_A Polycomb protein; chrom 98.1 6.9E-07 2.3E-11 61.6 0.7 28 41-68 26-53 (55)
28 3i91_A Chromobox protein homol 98.0 6.1E-07 2.1E-11 61.6 -0.1 27 41-67 26-52 (54)
29 1pdq_A Polycomb protein; methy 98.0 7.8E-07 2.7E-11 65.4 0.2 28 41-68 43-70 (72)
30 1g6z_A CLR4 protein; transfera 98.0 3.5E-06 1.2E-10 60.6 3.6 51 158-209 8-62 (70)
31 2k1b_A Chromobox protein homol 98.0 1.7E-06 5.8E-11 63.6 1.8 27 41-67 44-70 (73)
32 1q3l_A Heterochromatin protein 98.0 4.6E-07 1.6E-11 66.1 -1.3 28 41-68 39-66 (69)
33 2d9u_A Chromobox protein homol 98.0 6.3E-06 2.1E-10 60.1 4.7 50 158-209 10-61 (74)
34 2dnt_A Chromodomain protein, Y 98.0 5.2E-06 1.8E-10 61.0 4.2 52 158-210 13-67 (78)
35 2kvm_A Chromobox protein homol 98.0 5.7E-06 2E-10 60.2 4.2 49 158-208 13-63 (74)
36 3h91_A Chromobox protein homol 98.0 1.1E-06 3.7E-11 60.5 0.1 27 41-67 26-52 (54)
37 2dnv_A Chromobox protein homol 98.0 3.3E-06 1.1E-10 59.9 2.6 29 41-69 33-61 (64)
38 3g7l_A Chromo domain-containin 97.9 9.8E-07 3.3E-11 62.3 -0.8 30 41-70 31-60 (61)
39 3lwe_A M-phase phosphoprotein 97.8 1.1E-06 3.8E-11 62.0 -1.7 29 41-69 27-56 (62)
40 2rsn_A Chromo domain-containin 97.8 1.9E-06 6.4E-11 63.4 -0.6 28 40-67 44-72 (75)
41 2rso_A Chromatin-associated pr 97.8 3.6E-06 1.2E-10 64.0 0.6 27 41-67 55-83 (92)
42 2b2y_A CHD-1, chromodomain-hel 97.8 1.7E-05 5.8E-10 66.9 4.7 54 155-208 127-185 (187)
43 2kvm_A Chromobox protein homol 97.7 5.4E-06 1.9E-10 60.3 0.8 28 41-68 36-63 (74)
44 4hae_A CDY-like 2, chromodomai 97.7 1.1E-06 3.7E-11 65.6 -3.1 29 40-68 46-75 (81)
45 2dnt_A Chromodomain protein, Y 97.7 6E-06 2.1E-10 60.6 0.8 27 41-67 37-64 (78)
46 2rsn_A Chromo domain-containin 97.7 3.3E-05 1.1E-09 56.7 4.5 49 159-209 22-73 (75)
47 2d9u_A Chromobox protein homol 97.5 1.8E-05 6.1E-10 57.7 0.8 27 41-67 33-59 (74)
48 1x3p_A Cpsrp43; chromo-2 domai 97.5 3.4E-05 1.2E-09 53.5 2.1 22 46-68 28-49 (54)
49 1x3p_A Cpsrp43; chromo-2 domai 97.5 7.9E-06 2.7E-10 56.7 -1.5 45 160-207 2-48 (54)
50 4hae_A CDY-like 2, chromodomai 97.4 2.3E-05 7.8E-10 58.4 -0.0 49 159-208 24-75 (81)
51 3mwy_W Chromo domain-containin 97.3 1.5E-05 5.1E-10 77.7 -3.1 56 154-210 141-203 (800)
52 2epb_A Chromodomain-helicase-D 96.9 0.001 3.5E-08 47.8 4.5 50 155-207 7-65 (68)
53 2ee1_A Chromodomain helicase-D 96.8 0.00099 3.4E-08 47.9 3.9 52 152-206 4-62 (64)
54 2epb_A Chromodomain-helicase-D 96.4 0.00079 2.7E-08 48.4 1.1 26 41-67 40-65 (68)
55 2b2y_C CHD-1, chromodomain-hel 95.4 0.0066 2.3E-07 48.4 2.4 43 164-208 48-97 (115)
56 2b2y_A CHD-1, chromodomain-hel 94.3 0.039 1.3E-06 46.3 4.3 45 165-209 49-98 (187)
57 2b2y_C CHD-1, chromodomain-hel 93.9 0.0039 1.3E-07 49.7 -2.4 29 41-69 65-98 (115)
58 2ee1_A Chromodomain helicase-D 93.9 0.015 5.2E-07 41.7 0.8 25 42-67 36-63 (64)
59 2h1e_A Chromo domain protein 1 91.1 0.022 7.5E-07 47.5 -1.6 26 42-67 149-176 (177)
60 3mwy_W Chromo domain-containin 85.2 0.58 2E-05 45.6 3.8 39 157-195 36-95 (800)
61 3ui2_A Signal recognition part 41.5 27 0.00094 27.9 4.2 50 160-213 188-237 (244)
62 2lcc_A AT-rich interactive dom 21.4 1.2E+02 0.0042 21.6 4.3 35 160-194 25-61 (76)
63 2ro0_A Histone acetyltransfera 21.2 94 0.0032 23.2 3.7 35 161-195 40-76 (92)
No 1
>3q6s_A Chromobox protein homolog 1; incenp, heterochromatin, centromere, cell cycle; 1.93A {Homo sapiens} SCOP: b.34.13.2
Probab=99.96 E-value=8.1e-30 Score=191.01 Aligned_cols=72 Identities=39% Similarity=0.609 Sum_probs=64.9
Q ss_pred ccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCCCCchhhh
Q psy8405 150 DMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSENNASKQ 221 (225)
Q Consensus 150 ~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~~~~~~~q 221 (225)
++++||+|||+||+|||+++.+|+|+|||||||++++|+||+.+||.+||||||+|||+||+|+++++++.+
T Consensus 1 ~k~~Gf~rGle~EkI~g~~~~~Gel~fLvKWKg~~~~dlVpa~ean~k~PqlVI~FYE~~l~~~~~~~~~~~ 72 (78)
T 3q6s_A 1 EKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDD 72 (78)
T ss_dssp -CCCGGGGCCCEEEEEEEECTTSSCEEEEEETTCSCEEEEEHHHHHHHSHHHHHHHHHTTEEEECCC-----
T ss_pred CCCCccccCCCceEEeeEEcCCCcEEEEEEECCCChhheEeHHHHHhhChHHHHHHHHHhcccccCCchhhh
Confidence 368999999999999999999999999999999999999999999999999999999999999998877644
No 2
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=99.95 E-value=5.9e-29 Score=184.10 Aligned_cols=70 Identities=40% Similarity=0.608 Sum_probs=65.9
Q ss_pred hhccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCCCCc
Q psy8405 148 LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSENN 217 (225)
Q Consensus 148 ~~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~~~~ 217 (225)
+++.++||+|||+||+|+|+++.+|+|+|||+|||++++|+||+++||.+|||+||+|||+||+|+++++
T Consensus 5 ~~~~~~Gf~rGl~~ekI~g~~~~~Gel~fLvkWkg~d~~dlVpa~~a~~k~Pq~VI~FYE~~l~~~~~~~ 74 (74)
T 2fmm_A 5 ESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPS 74 (74)
T ss_dssp --CCCCGGGGCCCEEEEEEEEEETTEEEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHTTEEESSCCC
T ss_pred ccccCccccccCCceEEEEEEcCCCcEEEEEEECCCCcccEEEHHHHhhhChHHHHHHHHHhceecCCCC
Confidence 5788999999999999999999999999999999999999999999999999999999999999998753
No 3
>3p7j_A Heterochromatin protein 1; chromo shadow domain, gene silenc epigenetics, transcription; 2.30A {Drosophila melanogaster}
Probab=99.95 E-value=3.4e-28 Score=186.18 Aligned_cols=66 Identities=32% Similarity=0.636 Sum_probs=58.8
Q ss_pred hccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCC
Q psy8405 149 NDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPS 214 (225)
Q Consensus 149 ~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~ 214 (225)
..+++||+|||+||+|+|+++.+|+|+|||||||++++|+||+.+||.+||||||+|||+||+|++
T Consensus 16 ~~k~~GF~RGle~EkIlgat~~~Gel~fLVKWKg~~e~DlVpa~ean~k~PqlVI~FYEerl~w~~ 81 (87)
T 3p7j_A 16 VSGSTGFDRGLEAEKILGASDNNGRLTFLIQFKGVDQAEMVPSSVANEKIPRMVIHFYEERLSWYS 81 (87)
T ss_dssp ----CTTTTTCCEEEEEEEEEETTEEEEEEEETTCSSCEEEEHHHHHHHCHHHHHHHHHHTCC---
T ss_pred cCCCCCccCCCCceEEeeEEccCCcEEEEEEECCCCccceEeHHHHhhhChHHHHHHHHHhcccCc
Confidence 467899999999999999999999999999999999999999999999999999999999999994
No 4
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=99.94 E-value=5.3e-28 Score=175.10 Aligned_cols=63 Identities=43% Similarity=0.624 Sum_probs=58.5
Q ss_pred hccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhcc
Q psy8405 149 NDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV 211 (225)
Q Consensus 149 ~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~ 211 (225)
+++++||+|||+||+|+|+++.+|+|+|||||||++++|+||+.+||.+||||||+|||+||+
T Consensus 3 ~~~~~Gf~rGle~ekI~g~~~~~Gel~fLvKWKg~~~~d~Vpa~e~n~~~PqlVI~fYE~~l~ 65 (65)
T 3kup_A 3 ADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLT 65 (65)
T ss_dssp ---CCGGGGCCCEEEEEEEECTTSSCEEEEEETTCSCCEEEEHHHHHHHCHHHHHHHHHHHC-
T ss_pred CCCCCCcccCCCeeEEeeEEcCCCcEEEEEEECCCChhheEEHHHHHhhChHHHHHHHHHhcC
Confidence 467899999999999999999999999999999999999999999999999999999999986
No 5
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=99.93 E-value=2.6e-27 Score=176.49 Aligned_cols=64 Identities=42% Similarity=0.666 Sum_probs=55.9
Q ss_pred hhccCCCCCCCCcccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhcc
Q psy8405 148 LNDMNLGIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLV 211 (225)
Q Consensus 148 ~~~~~~GF~RGLepEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~ 211 (225)
.+++++||+|||+||+|+|+++.+|+|+|||||||++++|+||+.+||.+||||||+|||+||+
T Consensus 12 ~~~k~~Gf~rGle~EkIlg~t~~~Gel~fLVKWKg~~e~dlVpa~ean~k~PqlVI~FYEerlt 75 (75)
T 3i3c_A 12 SNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLT 75 (75)
T ss_dssp -CTTCCGGGGCCCEEEEEEEEC---CCEEEEEETTSSCEEEEEHHHHHHHCHHHHHHHHTC---
T ss_pred CcCCCCCcccCCCeeEEeeEEccCCcEEEEEEECCCChhceEEHHHHhhhChHHHHHHHHHhcC
Confidence 3578999999999999999999999999999999999999999999999999999999999986
No 6
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=99.83 E-value=2.7e-21 Score=141.66 Aligned_cols=56 Identities=27% Similarity=0.476 Sum_probs=48.8
Q ss_pred Ccccceeeeee-eCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCCCC
Q psy8405 159 LPVEEIIGATI-EVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFPSE 215 (225)
Q Consensus 159 LepEkIIGatd-~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~~~ 215 (225)
-.+++|+|+++ .+|+|+|||+|||+++.+ ||+++||.+|||+||+|||+||+|+++
T Consensus 11 ~~Ve~I~g~~~~~~g~L~flikwk~~~~~~-Vpa~~a~~kcPq~vI~FYE~~l~~~~~ 67 (68)
T 1e0b_A 11 DLVSSIDTIERKDDGTLEIYLTWKNGAISH-HPSTITNKKCPQKMLQFYESHLTFREN 67 (68)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEETTSCEEE-EEHHHHHHHSHHHHHHHHHTCC-----
T ss_pred hheeEEEEEEECCCCEEEEEEEECCCCccc-eEHHHhHhhCCHHHHHHHHHheeeccC
Confidence 46899999998 999999999999998877 999999999999999999999999874
No 7
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=98.80 E-value=2.1e-10 Score=96.22 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=79.1
Q ss_pred cccCCCCCCCCCCCCCC-chHH--HHhhhcCCCcCCCCcccccccCCCCcCccccccCCCCCCCCCcceeeeecccccCC
Q psy8405 41 NNQGLKSGDHENIHNVN-TSKI--GIKTEENPTLDGGNIKIPKKRGRKRKYPLANLIQPTSNHTPDGTVVKKKRGRKRKY 117 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~-c~~l--I~~~e~~~~~~~~~~k~~~kr~~k~~~~~~~~~q~~~~~~~~~~~~~k~~~~k~~~ 117 (225)
++|.--.|||||+++|. |+.| |..|..+.... ....+ .
T Consensus 54 Kg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk~~~~-------e~~~~-------~------------------------- 94 (177)
T 2h1e_A 54 TDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIE-------DQQVR-------L------------------------- 94 (177)
T ss_dssp TTSCGGGCEEECHHHHCSCTTHHHHHHHHHHHTHH-------HHHHH-------H-------------------------
T ss_pred CCCccccCeecCHHHHhhchHHHHHHHHHHHhhhh-------hhhhh-------c-------------------------
Confidence 56777899999999999 9999 88887721100 00000 0
Q ss_pred CCCCCChhhhhhhcccCCCCcchhHHHHHhhhccCCCCCCCCcccceeeeee-----eCCceEEEEEeCCC--CCcceee
Q psy8405 118 PLPTVEPEEVAYKGSQHNNSVNDIVVKEKLLNDMNLGIDRNLPVEEIIGATI-----EVGFPAYLVTWEGS--DEADLLP 190 (225)
Q Consensus 118 p~~~s~~~~~~~~~~~~~nses~~~kKk~e~~~~~~GF~RGLepEkIIGatd-----~~GeL~FLVKWKg~--de~DlVp 190 (225)
.+..+++.+.++..+ . .....+|...++||+||+... .+|.+.|||||+|. +++.+.|
T Consensus 95 -~~~~~~ed~E~~~~~----------~----e~~~~~~~e~~~VErIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~ 159 (177)
T 2h1e_A 95 -DPYVTAEDIEIMDME----------R----ERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWEN 159 (177)
T ss_dssp -CTTCCHHHHHHHHHH----------H----HHHHHHHHHTTSEEEEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEE
T ss_pred -ccCCChHHHHHhhhh----------h----hhhhhcccccceeEEEEEEeeecccCCCCcEEEEEEeCCCCcccccccC
Confidence 012234444444321 0 011236778899999999984 68999999999997 6888999
Q ss_pred hhHHHhhCCHHHHHHHH
Q psy8405 191 AEICKRKYPQPLIRFFE 207 (225)
Q Consensus 191 A~eaneKcPQmVIkFYE 207 (225)
+..+...||++|-+|++
T Consensus 160 ~~~~~~~~~~~I~~y~~ 176 (177)
T 2h1e_A 160 ATDIVKLAPEQVKHFQK 176 (177)
T ss_dssp HHHHHHHCHHHHHHHTC
T ss_pred hHHhhhhHHHHHHHHHh
Confidence 99999899999888865
No 8
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=98.54 E-value=4.1e-08 Score=68.82 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=41.1
Q ss_pred CcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHhhc
Q psy8405 159 LPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQHL 210 (225)
Q Consensus 159 LepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEerL 210 (225)
+++|+||+....+|.+.|||||+|.+. ..+.|...+ .||.+|.+|+.++-
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~~k 55 (59)
T 3fdt_A 4 YVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL--DCPELISEFMKKYK 55 (59)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHC---
T ss_pred EEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC--CCHHHHHHHHHhhh
Confidence 679999999988999999999999875 457777766 69999999998763
No 9
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=98.52 E-value=8.5e-08 Score=66.26 Aligned_cols=49 Identities=22% Similarity=0.494 Sum_probs=41.8
Q ss_pred CcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHhh
Q psy8405 159 LPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 159 LepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEer 209 (225)
+++|+||+....+|.+.|||||+|.+. ..+.|...+ .||.+|.+|++++
T Consensus 3 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~~q 53 (55)
T 3f2u_A 3 YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQ 53 (55)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CCHHHHHHHHC--
T ss_pred EEEEEEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC--CCHHHHHHHHHHc
Confidence 689999999988999999999999874 568888877 6999999999865
No 10
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=98.48 E-value=1.2e-07 Score=67.89 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=41.1
Q ss_pred cccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHHHhhCCHHHHHHHHhh
Q psy8405 160 PVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 160 epEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~eaneKcPQmVIkFYEer 209 (225)
+||+||+....+|.+.|||||+|.+.. .+.|...++ ||.+|.+|+...
T Consensus 2 EVE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~--c~~li~~f~~~~ 51 (64)
T 3mts_A 2 EVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK--CVRILKQFHKDL 51 (64)
T ss_dssp CEEEEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC--CHHHHHHHHHHH
T ss_pred CceEEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC--CHHHHHHHHHHH
Confidence 689999999889999999999998754 578887774 999999998754
No 11
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=98.45 E-value=1.6e-07 Score=66.35 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=42.4
Q ss_pred CCcccceeeeeeeCCce-EEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHhh
Q psy8405 158 NLPVEEIIGATIEVGFP-AYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 158 GLepEkIIGatd~~GeL-~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEer 209 (225)
-+++|+|++....+|.+ .|||||+|.+. ..+.|...+ .||.+|++||+++
T Consensus 7 ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~~~~~r 59 (61)
T 3g7l_A 7 VYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL--FGAEKVLKKWKKR 59 (61)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGG--TBCHHHHHHHHHC
T ss_pred EEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHC--CCHHHHHHHHHHh
Confidence 36899999998888887 99999999875 457787766 5999999999976
No 12
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=98.41 E-value=3.9e-07 Score=64.39 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=43.8
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer 209 (225)
-+++|+||+....+|.+.|||+|+|.+ ...+.|...+ ..||.+|-+|+.++
T Consensus 4 ~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl-~~~~~li~~f~~~~ 56 (62)
T 3lwe_A 4 VFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHL-EDCKEVLLEFRKKI 56 (62)
T ss_dssp SCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHH-TTCHHHHHHHHHHH
T ss_pred eEEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHh-hccHHHHHHHHHhh
Confidence 378999999998899999999999987 4568888877 36999999998765
No 13
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=98.37 E-value=2.6e-07 Score=63.47 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=39.7
Q ss_pred CcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHH
Q psy8405 159 LPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFE 207 (225)
Q Consensus 159 LepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYE 207 (225)
+++|+|++....+|.+.|||||+|.+. ..+.|...+ .||.+|.+|.+
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl--~~~~li~~f~~ 52 (54)
T 3i91_A 4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENI--LDARLLAAFEE 52 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGB--CCHHHHHHHHH
T ss_pred EEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHC--CCHHHHHHHHh
Confidence 579999999988999999999999876 457777754 59999888875
No 14
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=98.36 E-value=3.3e-07 Score=66.77 Aligned_cols=55 Identities=20% Similarity=0.414 Sum_probs=47.5
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhhccCCC
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQHLVFPS 214 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEerL~w~~ 214 (225)
-++||+||+....+|.+.|||||+|.+ ...+.|...+ .||.+|.+|+.++-.++.
T Consensus 13 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL--~~~~li~~f~~~~~~~~~ 69 (73)
T 1ap0_A 13 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL--DCPDLIAEFLQSQKTAHE 69 (73)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC--CCHHHHHHHTTTTTSSTT
T ss_pred eEEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC--CCHHHHHHHHHHhhcccc
Confidence 478999999998999999999999987 4678998877 599999999998776654
No 15
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=98.34 E-value=3.1e-07 Score=63.22 Aligned_cols=47 Identities=28% Similarity=0.468 Sum_probs=39.1
Q ss_pred CcccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHHHhhCCHHHHHHHH
Q psy8405 159 LPVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEICKRKYPQPLIRFFE 207 (225)
Q Consensus 159 LepEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~eaneKcPQmVIkFYE 207 (225)
+++|+|++....+|.+.|||||+|.+.. .+.|.. |..||.+|.+|+.
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~--nl~~~~li~~f~~ 52 (54)
T 3h91_A 4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEE--NILDPRLLLAFQK 52 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGG--GBCSHHHHHHHHC
T ss_pred eEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHh--HCCCHHHHHHHHh
Confidence 6799999999899999999999998754 567766 4558999888864
No 16
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=98.25 E-value=4.1e-07 Score=66.27 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=27.0
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT 70 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~ 70 (225)
++|+..+|||||++||+|++||.+|+....
T Consensus 36 kGy~~~~~TWEp~~nL~~~~li~~f~~~~~ 65 (73)
T 1ap0_A 36 KGFSDEDNTWEPEENLDCPDLIAEFLQSQK 65 (73)
T ss_dssp ESSSSCCCEEEETTTCCCHHHHHHHTTTTT
T ss_pred CCCCCccCcEeeHHHCCCHHHHHHHHHHhh
Confidence 578888999999999999999999999554
No 17
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=98.23 E-value=7.9e-07 Score=64.79 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=42.9
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer 209 (225)
-++||+||+....+|.+.|||||+|.+ ...+.|...+ .||++|-+|..++
T Consensus 16 ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL--~c~~lI~~F~~~~ 67 (69)
T 1q3l_A 16 EYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL--DCQDLIQQYEASR 67 (69)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE--ECHHHHHHHHHHC
T ss_pred cEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC--CCHHHHHHHHHHc
Confidence 368999999998999999999999986 4568898877 5999999888764
No 18
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.20 E-value=1.2e-06 Score=60.37 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=40.3
Q ss_pred CcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405 159 LPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 159 LepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe 208 (225)
+++|+||+....+|.+.|||||+|.+. ..+.|+..+ .||.+|-+|.++
T Consensus 4 y~VE~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l--~~~~li~~f~~~ 53 (55)
T 1pfb_A 4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNI--LDRRLIDIYEQT 53 (55)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CSTHHHHHHHTS
T ss_pred EEEEEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHC--CCHHHHHHHHHh
Confidence 579999999989999999999999764 568888765 489998887664
No 19
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=98.17 E-value=2.7e-07 Score=63.74 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=25.1
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEEN 68 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~ 68 (225)
++|+..+|||||++||+|++||.+|++.
T Consensus 25 kGy~~~~~TWEp~~nl~~~~li~~f~~~ 52 (55)
T 3f2u_A 25 KGFSDEDNTWEPEENLDCPDLIAEFLQS 52 (55)
T ss_dssp TTSCGGGCEEEEGGGCCCHHHHHHHHC-
T ss_pred EeCCCccCCeeEHHHCCCHHHHHHHHHH
Confidence 5677789999999999999999999983
No 20
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.17 E-value=1.3e-06 Score=64.27 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe 208 (225)
-++||+||+....+|.+.|||||+|.+. ..+.|++.+ .||.+|-+|.++
T Consensus 20 eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL--~~~~lI~~F~~~ 70 (72)
T 1pdq_A 20 VYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNI--LDRRLIDIYEQT 70 (72)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC--CSTHHHHHHC--
T ss_pred eEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHC--CCHHHHHHHHHh
Confidence 4789999999989999999999999764 468888765 499998888765
No 21
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=98.13 E-value=2.3e-07 Score=65.02 Aligned_cols=30 Identities=7% Similarity=-0.011 Sum_probs=25.2
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT 70 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~ 70 (225)
++|+..++||||++||+|++||.+|++..+
T Consensus 26 kGy~~~~~TWEp~~nl~~~~li~~f~~~~k 55 (59)
T 3fdt_A 26 KGFSEEHNTWEPEKNLDCPELISEFMKKYK 55 (59)
T ss_dssp TTSCGGGCEEEEGGGEECHHHHHHHHC---
T ss_pred eCCCcccCCccchhHCCCHHHHHHHHHhhh
Confidence 567778999999999999999999999544
No 22
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=98.13 E-value=6.2e-06 Score=62.72 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=42.2
Q ss_pred CCCcccceeeeee--eCCceEEEEEeCCCCCc---ceeehhHHHhhCCHHHHHHHHhh
Q psy8405 157 RNLPVEEIIGATI--EVGFPAYLVTWEGSDEA---DLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 157 RGLepEkIIGatd--~~GeL~FLVKWKg~de~---DlVpA~eaneKcPQmVIkFYEer 209 (225)
--++||+||+..- .+|.+.|||||+|.+.+ .+.|+..+ ..||.+|-+|+.++
T Consensus 29 eey~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl-~~c~~li~~f~~~~ 85 (92)
T 2rso_A 29 DEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADC-SGCKQLIEAYWNEH 85 (92)
T ss_dssp CCCCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGG-GTSHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHH-hhHHHHHHHHHHHc
Confidence 3589999999753 57999999999998643 48898876 35999999988765
No 23
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=98.13 E-value=1.3e-06 Score=62.07 Aligned_cols=49 Identities=24% Similarity=0.315 Sum_probs=39.8
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHh
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEe 208 (225)
-++||+||+....+|.+.|||||+|.+ ...+.|+.. ..||.+|.+|...
T Consensus 10 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~--l~~~~li~~f~~~ 60 (64)
T 2dnv_A 10 VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEEN--ILDARLLAAFESG 60 (64)
T ss_dssp CCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTT--CCCHHHHHHHHCC
T ss_pred eEEEEEEEEEEEeCCcEEEEEEECCCCcccCCccCHhH--CCCHHHHHHHHHH
Confidence 468999999988899999999999986 456888775 4578887777653
No 24
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=98.13 E-value=1.4e-06 Score=64.16 Aligned_cols=49 Identities=27% Similarity=0.414 Sum_probs=40.9
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe 208 (225)
-++||+||+....+|.+.|||||+|.+. ..+.|+..+ .||.+|-+|.++
T Consensus 21 eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL--~~~~li~~F~~~ 71 (73)
T 2k1b_A 21 VFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHI--LDPRLVMAYEEK 71 (73)
T ss_dssp CCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSC--SCHHHHHHHHTS
T ss_pred eEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHC--CCHHHHHHHHHh
Confidence 3689999999989999999999999874 458888755 489998888764
No 25
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=98.12 E-value=1.5e-07 Score=67.39 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=26.9
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT 70 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~ 70 (225)
++|+..+|||||++||+|++||.+|+..+.
T Consensus 23 kGy~~~~~TWEp~~nl~c~~li~~f~~~~~ 52 (64)
T 3mts_A 23 RGYPDSESTWEPRQNLKCVRILKQFHKDLE 52 (64)
T ss_dssp TTSCGGGCEEEEGGGCCCHHHHHHHHHHHH
T ss_pred ecCCCcCCcEeEHHHCCCHHHHHHHHHHHH
Confidence 578888999999999999999999999554
No 26
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=98.07 E-value=5.3e-07 Score=65.00 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=26.6
Q ss_pred cccCCCCCCCCCCCCC-CchHHHHhhhcCCC
Q psy8405 41 NNQGLKSGDHENIHNV-NTSKIGIKTEENPT 70 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL-~c~~lI~~~e~~~~ 70 (225)
++|+..+|||||++|| +|++||.+|+....
T Consensus 33 kGy~~~~~TWEp~enL~~~~~li~~f~~~~~ 63 (70)
T 1g6z_A 33 LNYSSRSDTWEPPENLSGCSAVLAEWKRRKR 63 (70)
T ss_dssp TTTTSSCCEEECGGGGSSCHHHHHHHHHHHT
T ss_pred CCCCCCCCceecHHHHhhhHHHHHHHHHhcc
Confidence 5788889999999999 99999999998433
No 27
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.06 E-value=6.9e-07 Score=61.57 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=25.5
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEEN 68 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~ 68 (225)
++|+..+|||||++||.|++||.+|++.
T Consensus 26 kgy~~~~~TWEp~~~l~~~~li~~f~~~ 53 (55)
T 1pfb_A 26 KGWNQRYNTWEPEVNILDRRLIDIYEQT 53 (55)
T ss_dssp TTSCGGGCEEEEGGGCCSTHHHHHHHTS
T ss_pred cCCCCccCcEeEHHHCCCHHHHHHHHHh
Confidence 5678889999999999999999999983
No 28
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=98.03 E-value=6.1e-07 Score=61.61 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=25.3
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~ 67 (225)
++|+..+|||||++||.|++||.+|++
T Consensus 26 kGy~~~~~TWEp~~nl~~~~li~~f~~ 52 (54)
T 3i91_A 26 KGWSQKYSTWEPEENILDARLLAAFEE 52 (54)
T ss_dssp TTSCGGGCEEEEGGGBCCHHHHHHHHH
T ss_pred eCCCcccCcccchhHCCCHHHHHHHHh
Confidence 678888999999999999999999987
No 29
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=98.01 E-value=7.8e-07 Score=65.37 Aligned_cols=28 Identities=11% Similarity=-0.016 Sum_probs=24.6
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEEN 68 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~ 68 (225)
++|+..+|||||++||+|++||.+|++.
T Consensus 43 kGy~~~~nTWEP~enL~~~~lI~~F~~~ 70 (72)
T 1pdq_A 43 KGWNQRYNTWEPEVNILDRRLIDIYEQT 70 (72)
T ss_dssp TTSCGGGCEEEEGGGCCSTHHHHHHC--
T ss_pred CCCCCccCeecchHHCCCHHHHHHHHHh
Confidence 5788899999999999999999999983
No 30
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=98.01 E-value=3.5e-06 Score=60.64 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=42.3
Q ss_pred CCcccceeeeeeeC-CceE-EEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405 158 NLPVEEIIGATIEV-GFPA-YLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 158 GLepEkIIGatd~~-GeL~-FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer 209 (225)
-++||+||+..... |.+. |||||+|.+ ...+.|+..+. .||.+|-+|....
T Consensus 8 ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~-~~~~li~~f~~~~ 62 (70)
T 1g6z_A 8 EYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS-GCSAVLAEWKRRK 62 (70)
T ss_dssp SSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS-SCHHHHHHHHHHH
T ss_pred eEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh-hhHHHHHHHHHhc
Confidence 46899999998777 9998 999999987 56688888763 7999988887754
No 31
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=98.00 E-value=1.7e-06 Score=63.63 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=25.5
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~ 67 (225)
++|+..+|||||++||+|++||.+|++
T Consensus 44 kGy~~~~~TWEp~enL~~~~li~~F~~ 70 (73)
T 2k1b_A 44 KGWPPKYSTWEPEEHILDPRLVMAYEE 70 (73)
T ss_dssp TTCCGGGCCEEETTSCSCHHHHHHHHT
T ss_pred CCCCcccCeecchHHCCCHHHHHHHHH
Confidence 578889999999999999999999998
No 32
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=98.00 E-value=4.6e-07 Score=66.06 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=25.7
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEEN 68 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~ 68 (225)
++|+..+|||||++||+|++||.+|+..
T Consensus 39 kGy~~~~~TWEp~enL~c~~lI~~F~~~ 66 (69)
T 1q3l_A 39 KGYPETENTWEPENNLDCQDLIQQYEAS 66 (69)
T ss_dssp TTSCGGGCEEEEGGGEECHHHHHHHHHH
T ss_pred cCCCcccCCccchHHCCCHHHHHHHHHH
Confidence 5788889999999999999999999983
No 33
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=6.3e-06 Score=60.10 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=41.4
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhh
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEer 209 (225)
-+++|+||+....+|.+.|||||+|.+ ...+.|+.. ..||.+|-+|...+
T Consensus 10 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~n--l~~~~li~~f~~~~ 61 (74)
T 2d9u_A 10 VFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEEN--ILDPRLLLAFQKKE 61 (74)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEETTSCTTTCEEEEGGG--CCCHHHHHHHHHHH
T ss_pred cEEEEEEEEEEEeCCcEEEEEEECCCCCccCccccHHH--CCCHHHHHHHHHhh
Confidence 478999999998899999999999986 556888875 45788888887643
No 34
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=97.99 E-value=5.2e-06 Score=60.97 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=42.3
Q ss_pred CCcccceeeeee-eCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhhc
Q psy8405 158 NLPVEEIIGATI-EVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQHL 210 (225)
Q Consensus 158 GLepEkIIGatd-~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEerL 210 (225)
-++||+||+... .+|.+.|||||+|.+ ...+.|...+. .||++|-+|...+.
T Consensus 13 ~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~-~~~~li~~f~~~~~ 67 (78)
T 2dnt_A 13 LYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV-NCEEYIHDFNRRHT 67 (78)
T ss_dssp SCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT-TCHHHHHHHHHHHS
T ss_pred eEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH-hHHHHHHHHHhhhh
Confidence 478999999875 579999999999987 56688988763 59999888877654
No 35
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=97.97 E-value=5.7e-06 Score=60.21 Aligned_cols=49 Identities=27% Similarity=0.414 Sum_probs=41.0
Q ss_pred CCcccceeeeeeeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405 158 NLPVEEIIGATIEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 158 GLepEkIIGatd~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe 208 (225)
-++||+||+....+|.+.|||||+|.+. ..+.|+..+ .||.+|.+|.+.
T Consensus 13 ~y~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L--~~~~li~~f~~~ 63 (74)
T 2kvm_A 13 VFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHI--LDPRLVMAYEEK 63 (74)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEETTTC--SCHHHHHHHHHH
T ss_pred cEEEEEEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHC--CCHHHHHHHHHH
Confidence 3689999999989999999999999864 458888855 489888888764
No 36
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=97.96 E-value=1.1e-06 Score=60.47 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=25.1
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~ 67 (225)
++|+..+|||||++||.|++||.+|+.
T Consensus 26 kGy~~~~~TWEp~~nl~~~~li~~f~~ 52 (54)
T 3h91_A 26 RGWSSKHNSWEPEENILDPRLLLAFQK 52 (54)
T ss_dssp TTSCGGGCEEEEGGGBCSHHHHHHHHC
T ss_pred eCCCCcCCCeecHhHCCCHHHHHHHHh
Confidence 678888999999999999999999987
No 37
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=97.96 E-value=3.3e-06 Score=59.93 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=26.2
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcCC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEENP 69 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~ 69 (225)
++|...+|||||++||.|++||.+|++.+
T Consensus 33 kGy~~~~~TWEp~~~l~~~~li~~f~~~~ 61 (64)
T 2dnv_A 33 KGWSQKYSTWEPEENILDARLLAAFESGP 61 (64)
T ss_dssp SSCCCSSCCEEETTTCCCHHHHHHHHCCT
T ss_pred CCCCcccCCccCHhHCCCHHHHHHHHHHc
Confidence 57888899999999999999999999844
No 38
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=97.92 E-value=9.8e-07 Score=62.25 Aligned_cols=30 Identities=10% Similarity=-0.016 Sum_probs=25.7
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcCCC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEENPT 70 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~~~ 70 (225)
+.|+..+|||||++||+|++||.+|-...+
T Consensus 31 kGy~~~~~TWEp~~nl~~~~li~~~~~~rK 60 (61)
T 3g7l_A 31 AGYDWYDNTWEPEQNLFGAEKVLKKWKKRK 60 (61)
T ss_dssp TTSCGGGCEEEEGGGGTBCHHHHHHHHHC-
T ss_pred eCCCCcCCceeeHhHCCCHHHHHHHHHHhc
Confidence 567888999999999999999999987543
No 39
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=97.83 E-value=1.1e-06 Score=62.05 Aligned_cols=29 Identities=3% Similarity=0.011 Sum_probs=25.9
Q ss_pred cccCCCCCCCCCCCCC-CchHHHHhhhcCC
Q psy8405 41 NNQGLKSGDHENIHNV-NTSKIGIKTEENP 69 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL-~c~~lI~~~e~~~ 69 (225)
++|+..+|||||++|| ||++||.+|++.+
T Consensus 27 kGy~~~~~TWEp~~nl~~~~~li~~f~~~~ 56 (62)
T 3lwe_A 27 KGYTSDDDTWEPEIHLEDCKEVLLEFRKKI 56 (62)
T ss_dssp TTSCGGGCEEEEHHHHTTCHHHHHHHHHHH
T ss_pred eCCCCcCCCeeeHhHhhccHHHHHHHHHhh
Confidence 5778889999999999 9999999999843
No 40
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=97.83 E-value=1.9e-06 Score=63.40 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=25.5
Q ss_pred ccccCCCCCCCCCCCCC-CchHHHHhhhc
Q psy8405 40 ENNQGLKSGDHENIHNV-NTSKIGIKTEE 67 (225)
Q Consensus 40 ~~~~~~~~ntWEp~~nL-~c~~lI~~~e~ 67 (225)
=++|+..+|||||++|| ||++||.+|++
T Consensus 44 WkGy~~~~~TWEp~~nl~~~~~li~~f~~ 72 (75)
T 2rsn_A 44 WAGYDWYDNTWEPEQNLFGAEKVLKKWKK 72 (75)
T ss_dssp EESSCGGGCEEEEGGGGTTTHHHHHHHHH
T ss_pred ECCCCCcCCeeecHHHccChHHHHHHHHH
Confidence 35788899999999999 79999999998
No 41
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=97.80 E-value=3.6e-06 Score=64.00 Aligned_cols=27 Identities=0% Similarity=-0.135 Sum_probs=24.5
Q ss_pred cccC-CCCCCCCCCCCC-CchHHHHhhhc
Q psy8405 41 NNQG-LKSGDHENIHNV-NTSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~-~~~ntWEp~~nL-~c~~lI~~~e~ 67 (225)
++|+ ..+|||||++|| ||++||.+|++
T Consensus 55 kGy~~~~~~TWEP~~nl~~c~~li~~f~~ 83 (92)
T 2rso_A 55 EGYDDPSDNTWSSEADCSGCKQLIEAYWN 83 (92)
T ss_dssp TTCCCCTTSEEECGGGGGTSHHHHHHHHH
T ss_pred ccCCCcccCccccHHHHhhHHHHHHHHHH
Confidence 5677 578999999999 89999999998
No 42
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=97.80 E-value=1.7e-05 Score=66.91 Aligned_cols=54 Identities=20% Similarity=0.463 Sum_probs=46.1
Q ss_pred CCCCCcccceeeeee---eCCceEEEEEeCCC--CCcceeehhHHHhhCCHHHHHHHHh
Q psy8405 155 IDRNLPVEEIIGATI---EVGFPAYLVTWEGS--DEADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 155 F~RGLepEkIIGatd---~~GeL~FLVKWKg~--de~DlVpA~eaneKcPQmVIkFYEe 208 (225)
+...++||+||+... .+|.+.|||||+|. +++.+.|+..+...||++|-+|+..
T Consensus 127 ~~e~~~VErIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i~~~~~~~I~~f~~R 185 (187)
T 2b2y_A 127 HKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSR 185 (187)
T ss_dssp HHHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHT
T ss_pred hhhcceeEEEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhhhhhHHHHHHHHHhh
Confidence 344579999999876 68999999999997 6888999999988999998887753
No 43
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=97.75 E-value=5.4e-06 Score=60.34 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=25.8
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhcC
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEEN 68 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~~ 68 (225)
++|+..+|||||++||.|++||.+|++.
T Consensus 36 kGy~~~~~TWEp~~~L~~~~li~~f~~~ 63 (74)
T 2kvm_A 36 KGWPPKYSTWEPEEHILDPRLVMAYEEK 63 (74)
T ss_dssp TTSCGGGCEEEETTTCSCHHHHHHHHHH
T ss_pred cCCCCccCeEeeHHHCCCHHHHHHHHHH
Confidence 5788889999999999999999999984
No 44
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=97.74 E-value=1.1e-06 Score=65.60 Aligned_cols=29 Identities=10% Similarity=-0.006 Sum_probs=26.1
Q ss_pred ccccCCCCCCCCCCCCC-CchHHHHhhhcC
Q psy8405 40 ENNQGLKSGDHENIHNV-NTSKIGIKTEEN 68 (225)
Q Consensus 40 ~~~~~~~~ntWEp~~nL-~c~~lI~~~e~~ 68 (225)
=++|+..+|||||++|| ||++||.+|++.
T Consensus 46 WkGy~~~~~TWEp~~nl~~~~~li~~f~~~ 75 (81)
T 4hae_A 46 WKGYGSTEDTWEPEHHLLHCEEFIDEFNGL 75 (81)
T ss_dssp ETTCCGGGCEEEEGGGEEECCCCCCTTCSS
T ss_pred ECCCCCCCCeEEeHHHhhhhHHHHHHHHHH
Confidence 35788999999999999 899999999983
No 45
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=97.73 E-value=6e-06 Score=60.64 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=24.9
Q ss_pred cccCCCCCCCCCCCCC-CchHHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNV-NTSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL-~c~~lI~~~e~ 67 (225)
++|+..+|||||++|| +|++||.+|+.
T Consensus 37 kGy~~~~~TWEp~~~l~~~~~li~~f~~ 64 (78)
T 2dnt_A 37 KGYDSEDDTWEPEQHLVNCEEYIHDFNR 64 (78)
T ss_dssp TTBCGGGCEEEETTTCTTCHHHHHHHHH
T ss_pred CCCCccCCceecHHHHHhHHHHHHHHHh
Confidence 5677789999999999 99999999998
No 46
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=97.71 E-value=3.3e-05 Score=56.74 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=36.1
Q ss_pred Ccccceeeeee-eCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHhh
Q psy8405 159 LPVEEIIGATI-EVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQH 209 (225)
Q Consensus 159 LepEkIIGatd-~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEer 209 (225)
+++|+||+... .+|.+.|||||+|.+. ..+.|+..+. -|+.+ |+.|+++
T Consensus 22 yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~-~~~~l-i~~f~~~ 73 (75)
T 2rsn_A 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF-GAEKV-LKKWKKR 73 (75)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT-TTHHH-HHHHHHH
T ss_pred EEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc-ChHHH-HHHHHHh
Confidence 78999999864 5799999999999864 4588887653 35555 5555543
No 47
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=1.8e-05 Score=57.66 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=25.3
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~ 67 (225)
++|+..+|||||++||.|++||.+|+.
T Consensus 33 kGy~~~~~TWEp~~nl~~~~li~~f~~ 59 (74)
T 2d9u_A 33 RGWSSKHNSWEPEENILDPRLLLAFQK 59 (74)
T ss_dssp TTSCTTTCEEEEGGGCCCHHHHHHHHH
T ss_pred CCCCCccCccccHHHCCCHHHHHHHHH
Confidence 578888999999999999999999998
No 48
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=97.52 E-value=3.4e-05 Score=53.47 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCchHHHHhhhcC
Q psy8405 46 KSGDHENIHNVNTSKIGIKTEEN 68 (225)
Q Consensus 46 ~~ntWEp~~nL~c~~lI~~~e~~ 68 (225)
.+|||||++||+ ++||.+|++.
T Consensus 28 ~~~TWEp~~nL~-~~li~~f~~~ 49 (54)
T 1x3p_A 28 SDATWEPQDNVD-STLVLLYQQQ 49 (54)
T ss_dssp SSCSCSTTCCSS-SSSHHHHTSS
T ss_pred CcCCccchHHCC-HHHHHHHHHH
Confidence 799999999999 9999999983
No 49
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=97.48 E-value=7.9e-06 Score=56.70 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=37.8
Q ss_pred cccceeeeeeeC-Cce-EEEEEeCCCCCcceeehhHHHhhCCHHHHHHHH
Q psy8405 160 PVEEIIGATIEV-GFP-AYLVTWEGSDEADLLPAEICKRKYPQPLIRFFE 207 (225)
Q Consensus 160 epEkIIGatd~~-GeL-~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYE 207 (225)
++|+||+....+ |.+ .|||||+|.+...+-|++.+. |.+|-+|+.
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkgy~~~TWEp~~nL~---~~li~~f~~ 48 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVD---STLVLLYQQ 48 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSSSSCSCSTTCCSS---SSSHHHHTS
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECCCCcCCccchHHCC---HHHHHHHHH
Confidence 689999987666 998 999999999888899998764 888777664
No 50
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=97.39 E-value=2.3e-05 Score=58.39 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=39.2
Q ss_pred Ccccceeeee-eeCCceEEEEEeCCCCC--cceeehhHHHhhCCHHHHHHHHh
Q psy8405 159 LPVEEIIGAT-IEVGFPAYLVTWEGSDE--ADLLPAEICKRKYPQPLIRFFEQ 208 (225)
Q Consensus 159 LepEkIIGat-d~~GeL~FLVKWKg~de--~DlVpA~eaneKcPQmVIkFYEe 208 (225)
+++|+||+.. ..+|.+.|||||+|.+. ..+.|+..+. -||.+|-+|...
T Consensus 24 yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~-~~~~li~~f~~~ 75 (81)
T 4hae_A 24 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL-HCEEFIDEFNGL 75 (81)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE-ECCCCCCTTCSS
T ss_pred EEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh-hhHHHHHHHHHH
Confidence 7899999986 45799999999999864 4588888663 599998777554
No 51
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.26 E-value=1.5e-05 Score=77.73 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCCCCcccceeeeee-----eCCceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHHhhc
Q psy8405 154 GIDRNLPVEEIIGATI-----EVGFPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFEQHL 210 (225)
Q Consensus 154 GF~RGLepEkIIGatd-----~~GeL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYEerL 210 (225)
+|.+.++||+||+... ..|.++|||||++.. .+.+=....+....|.. |+.|+.+.
T Consensus 141 ~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~-i~~~~~r~ 203 (800)
T 3mwy_W 141 EFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQ-VKHFQNRE 203 (800)
T ss_dssp HHTTTTCEEEECCCCCEECTTSCEECBCCEEETTSCSTTCBCCBHHHHTTTCHHH-HHHHHHTT
T ss_pred ccccccceeEEEeecccccCCCCCceEEEEEecCCCcccccccchhhhhhhhHHH-HHHHHHhh
Confidence 5788999999999876 667899999999854 44454555554445555 55555553
No 52
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.001 Score=47.79 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=35.1
Q ss_pred CCCC-Ccccceeeeee----eCC--ceEEEEEeCCCC--CcceeehhHHHhhCCHHHHHHHH
Q psy8405 155 IDRN-LPVEEIIGATI----EVG--FPAYLVTWEGSD--EADLLPAEICKRKYPQPLIRFFE 207 (225)
Q Consensus 155 F~RG-LepEkIIGatd----~~G--eL~FLVKWKg~d--e~DlVpA~eaneKcPQmVIkFYE 207 (225)
|... ++||+||+... .+| .+.|||||+|.. ++.+-|+..+ +|++|-+|..
T Consensus 7 ~~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~~~l---~~~~I~~f~~ 65 (68)
T 2epb_A 7 GNPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDV---DPAKVKEFES 65 (68)
T ss_dssp SCSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEETTTS---CHHHHHHHHH
T ss_pred CCCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccchhc---CHHHHHHHHH
Confidence 4444 48999999653 247 899999999964 5567777665 6777555443
No 53
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=96.83 E-value=0.00099 Score=47.89 Aligned_cols=52 Identities=13% Similarity=0.325 Sum_probs=37.5
Q ss_pred CCCCCCC-Ccccceeeeee-eCCceEEEEEeCCC--CCcceeehhHHHhhCCHH---HHHHH
Q psy8405 152 NLGIDRN-LPVEEIIGATI-EVGFPAYLVTWEGS--DEADLLPAEICKRKYPQP---LIRFF 206 (225)
Q Consensus 152 ~~GF~RG-LepEkIIGatd-~~GeL~FLVKWKg~--de~DlVpA~eaneKcPQm---VIkFY 206 (225)
..||.-. +.+|+||+... .+|.+.|||||++. +++.+=+.. ..||.+ |-+|+
T Consensus 4 ~~~~~pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~---~~~~~~~~~I~~y~ 62 (64)
T 2ee1_A 4 GSSGKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESED---VEIQDYDLFKQSYW 62 (64)
T ss_dssp CSSSCCSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEETT---CCCTTHHHHHHHHH
T ss_pred ccccCCCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCCc---ccCcchHHHHHHHH
Confidence 4566655 59999998874 58999999999996 455566665 246665 55554
No 54
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.44 E-value=0.00079 Score=48.41 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=22.5
Q ss_pred cccCCCCCCCCCCCCCCchHHHHhhhc
Q psy8405 41 NNQGLKSGDHENIHNVNTSKIGIKTEE 67 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~lI~~~e~ 67 (225)
+.++-.++||||++|| |+++|.+|++
T Consensus 40 kgl~y~e~TWE~~~~l-~~~~I~~f~~ 65 (68)
T 2epb_A 40 CSLPYEESTWELEEDV-DPAKVKEFES 65 (68)
T ss_dssp TTSCGGGCCEEETTTS-CHHHHHHHHH
T ss_pred cCCChhcCccccchhc-CHHHHHHHHH
Confidence 3456789999999999 6799999997
No 55
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=95.44 E-value=0.0066 Score=48.38 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=31.0
Q ss_pred eeeeeeeCCceEEEEEeCCCCCcc--eeehhHHHhhCC-----HHHHHHHHh
Q psy8405 164 IIGATIEVGFPAYLVTWEGSDEAD--LLPAEICKRKYP-----QPLIRFFEQ 208 (225)
Q Consensus 164 IIGatd~~GeL~FLVKWKg~de~D--lVpA~eaneKcP-----QmVIkFYEe 208 (225)
|++.....|.+.|||||+|.+..+ +-|...+ .|| .+|..|...
T Consensus 48 ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL--~~~~~~g~kklenY~kk 97 (115)
T 2b2y_C 48 GFEKNKEPGEIQYLIKWKGWSHIHNTWETEETL--KQQNVRGMKKLDNYKKK 97 (115)
T ss_dssp TCCTTSSSCEEEEEEEETTSCGGGCEEECHHHH--HHHTCBCTHHHHHHHC-
T ss_pred ccccceeCCcEEEEEEECCCCchhcccCCHHHc--CCccchHHHHHHHHHHH
Confidence 466556789999999999988765 5666654 454 478888764
No 56
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=94.30 E-value=0.039 Score=46.32 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=35.0
Q ss_pred eeeeeeCCceEEEEEeCCCC--CcceeehhHHH---hhCCHHHHHHHHhh
Q psy8405 165 IGATIEVGFPAYLVTWEGSD--EADLLPAEICK---RKYPQPLIRFFEQH 209 (225)
Q Consensus 165 IGatd~~GeL~FLVKWKg~d--e~DlVpA~ean---eKcPQmVIkFYEer 209 (225)
++.....|...|||||+|.+ ...++|...+. ..++.++-.|....
T Consensus 49 ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~ 98 (187)
T 2b2y_A 49 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD 98 (187)
T ss_dssp CC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHH
T ss_pred cCccccCCcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhh
Confidence 44445678999999999988 56799999886 46788888887764
No 57
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=93.93 E-value=0.0039 Score=49.69 Aligned_cols=29 Identities=3% Similarity=-0.097 Sum_probs=23.4
Q ss_pred cccCCCCCCCCCCCCCCchH-----HHHhhhcCC
Q psy8405 41 NNQGLKSGDHENIHNVNTSK-----IGIKTEENP 69 (225)
Q Consensus 41 ~~~~~~~ntWEp~~nL~c~~-----lI~~~e~~~ 69 (225)
+.|.-.+|||||++||+|++ ++..|....
T Consensus 65 kG~s~~~nTWEp~enL~~~~~~g~kklenY~kk~ 98 (115)
T 2b2y_C 65 KGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKD 98 (115)
T ss_dssp TTSCGGGCEEECHHHHHHHTCBCTHHHHHHHC--
T ss_pred CCCCchhcccCCHHHcCCccchHHHHHHHHHHHH
Confidence 45677899999999999964 899999843
No 58
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=93.88 E-value=0.015 Score=41.65 Aligned_cols=25 Identities=8% Similarity=-0.029 Sum_probs=21.1
Q ss_pred ccCCCCCCCCCCCCCCchHH---HHhhhc
Q psy8405 42 NQGLKSGDHENIHNVNTSKI---GIKTEE 67 (225)
Q Consensus 42 ~~~~~~ntWEp~~nL~c~~l---I~~~e~ 67 (225)
.+.-.++||||++ |+|+++ |.+|..
T Consensus 36 gl~y~e~TWE~~~-~~~~~~~~~I~~y~~ 63 (64)
T 2ee1_A 36 DLPYDQASWESED-VEIQDYDLFKQSYWN 63 (64)
T ss_dssp TSCTTTCEEEETT-CCCTTHHHHHHHHHH
T ss_pred CCCcccCcccCCc-ccCcchHHHHHHHHh
Confidence 3455799999999 899999 999974
No 59
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=91.09 E-value=0.022 Score=47.50 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=23.0
Q ss_pred ccCCCCCCCCCCCCCC--chHHHHhhhc
Q psy8405 42 NQGLKSGDHENIHNVN--TSKIGIKTEE 67 (225)
Q Consensus 42 ~~~~~~ntWEp~~nL~--c~~lI~~~e~ 67 (225)
.++-.+.||||+++|+ |+++|.+|++
T Consensus 149 gl~y~e~TWE~~~~~~~~~~~~I~~y~~ 176 (177)
T 2h1e_A 149 RLNYDEATWENATDIVKLAPEQVKHFQK 176 (177)
T ss_dssp TSCSTTCEEEEHHHHHHHCHHHHHHHTC
T ss_pred CCCcccccccChHHhhhhHHHHHHHHHh
Confidence 4555999999999997 9999999986
No 60
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=85.23 E-value=0.58 Score=45.62 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=31.3
Q ss_pred CCCcccceeeeeee-------------------CCceEEEEEeCCCC--CcceeehhHHH
Q psy8405 157 RNLPVEEIIGATIE-------------------VGFPAYLVTWEGSD--EADLLPAEICK 195 (225)
Q Consensus 157 RGLepEkIIGatd~-------------------~GeL~FLVKWKg~d--e~DlVpA~ean 195 (225)
....+|+||+-.-. +|.+-|||||||.. ...|+|.+.+.
T Consensus 36 ~~~~ve~vl~~r~~~~~~~~~~~~~~~~~~~~~~~~~eylvKWkg~s~~hntWe~~e~L~ 95 (800)
T 3mwy_W 36 DFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIG 95 (800)
T ss_dssp CCCBCSEEEEEECCCC--------CCSCCHHHHHHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred CCCchhhhccccccccccCCccccccCcCcCCCcCceEEEEEeCCcceeeccccCHHHHh
Confidence 45679999976655 78899999999987 55688888765
No 61
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=41.54 E-value=27 Score=27.85 Aligned_cols=50 Identities=18% Similarity=0.333 Sum_probs=35.6
Q ss_pred cccceeeeeeeCCceEEEEEeCCCCCcceeehhHHHhhCCHHHHHHHHhhccCC
Q psy8405 160 PVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213 (225)
Q Consensus 160 epEkIIGatd~~GeL~FLVKWKg~de~DlVpA~eaneKcPQmVIkFYEerL~w~ 213 (225)
.+..++......+...||++|.+.....+++... ..+.+|+=|+..+...
T Consensus 188 ~~~~~~~~~~~~~~~e~l~~~~~~~~~~w~~~~~----i~~~li~~y~~~~~~~ 237 (244)
T 3ui2_A 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVH----VAEDVAKDYEDGLEYA 237 (244)
T ss_dssp EEEEEEEEESCTTSCEEEEEESSSSCEEEEESTT----BCHHHHHHHHHHHC--
T ss_pred cHHHHHHHhccCcchhhhhhhcCCCCCCcCcchh----cCHHHHHHHHHHHHHH
Confidence 3555666666677899999999988888988773 3356666677766543
No 62
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=21.39 E-value=1.2e+02 Score=21.61 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=26.3
Q ss_pred cccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHH
Q psy8405 160 PVEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEIC 194 (225)
Q Consensus 160 epEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~ea 194 (225)
=+.+|+.....+|...|+|.|.|...- ++||...+
T Consensus 25 y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri 61 (76)
T 2lcc_A 25 YEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRI 61 (76)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred EEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhc
Confidence 356688887888999999999986532 57887644
No 63
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.17 E-value=94 Score=23.21 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=27.6
Q ss_pred ccceeeeeeeCCceEEEEEeCCCCCc--ceeehhHHH
Q psy8405 161 VEEIIGATIEVGFPAYLVTWEGSDEA--DLLPAEICK 195 (225)
Q Consensus 161 pEkIIGatd~~GeL~FLVKWKg~de~--DlVpA~ean 195 (225)
.-+||.....+|...|+|.|.|...- ++|+...+.
T Consensus 40 ~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 40 LAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp EEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred EEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 46688887778999999999997643 588887654
Done!