RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8405
         (225 letters)



>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse
           (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
          Length = 68

 Score = 75.1 bits (185), Expect = 9e-19
 Identities = 28/64 (43%), Positives = 38/64 (59%)

Query: 154 GIDRNLPVEEIIGATIEVGFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHLVFP 213
           G  R L  E IIGAT   G   +L+ W+ SDEADL+PA+    K PQ +I F+E+ L + 
Sbjct: 5   GFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWH 64

Query: 214 SENN 217
           S  +
Sbjct: 65  SYPS 68


>d1e0ba_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fission
           yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]}
          Length = 61

 Score = 30.5 bits (69), Expect = 0.023
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 175 AYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQHL 210
            YL TW+        P+ I  +K PQ +++F+E HL
Sbjct: 28  IYL-TWKN-GAISHHPSTITNKKCPQKMLQFYESHL 61


>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 54

 Score = 27.4 bits (61), Expect = 0.27
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 161 VEEIIGATIEV--GFPAYLVTWEGSDEADLLPAEICKRKYPQPLIRFFEQ 208
            E +IG  +        YLV W    +A   P +         L+  ++Q
Sbjct: 3   AESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDST----LVLLYQQ 48


>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 55

 Score = 27.0 bits (60), Expect = 0.30
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 161 VEEIIGATIEVGFPAYLVTWEGSDEAD--LLPAEICKRKYPQPLIRFFEQ 208
            E+II   ++ G   Y V W+G ++      P      +    LI  +EQ
Sbjct: 6   AEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRR---LIDIYEQ 52


>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 52

 Score = 26.6 bits (59), Expect = 0.47
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 161 VEEIIGATIEVGFPAYLVTWEGSDEAD 187
           VE+II   +  G   Y + W+G  E +
Sbjct: 4   VEKIIDRRVRKGMVEYYLKWKGYPETE 30


>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 52

 Score = 26.2 bits (58), Expect = 0.64
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 161 VEEIIGATIEVGFPAYLVTWEGSDEAD 187
            E ++   I  G   YLV W+G  +  
Sbjct: 7   AEALLKRRIRKGRMEYLVKWKGWSQKY 33


>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
           musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
          Length = 73

 Score = 25.5 bits (56), Expect = 1.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 161 VEEIIGATIEVGFPAYLVTWEGSDEAD 187
           VE+++   +  G   YL+ W+G  + D
Sbjct: 16  VEKVLDRRVVKGKVEYLLKWKGFSDED 42


>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase
           {Methanoculleus marisnigri [TaxId: 2198]}
          Length = 264

 Score = 26.1 bits (57), Expect = 3.1
 Identities = 6/64 (9%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 112 GRKRKYPLPTVEPEEVAYKGSQHNN-SVNDIVVKEKLLNDMNLGIDR--NLPVEEIIGAT 168
               +     + P+ +  + ++    S+    +           ++   +LP++ +  A 
Sbjct: 188 APGAELSQFVLYPQGMEVETAEVGKGSLKWTELTPMQSPAQYYIVNSLASLPIKRVTQAV 247

Query: 169 IEVG 172
           +  G
Sbjct: 248 LVEG 251


>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
           domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 23.6 bits (51), Expect = 8.5
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 6/53 (11%)

Query: 161 VEEIIG---ATIEVGFPAYLVTWEG--SDEADLLPAEICKRKYPQPLIRFFEQ 208
           V  II         G+P Y   W+G    E       +  +K+    I  +  
Sbjct: 26  VGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQA-CIDEYFS 77


>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus
           [TaxId: 274]}
          Length = 66

 Score = 23.5 bits (51), Expect = 8.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 62  GIKTEENPTLDGGNIKIPKKRGRKRKYPLANLIQPTSNHT----PDGTVVKKKRGRKRKY 117
           G+K  E   +  GNI + ++RG  R  P  N+     + T     DG V  + RGR  +Y
Sbjct: 3   GVKRYEGQVVRAGNI-LVRQRGT-RFKPGKNVGM-GRDFTLFALVDGVVEFQDRGRLGRY 59


>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
           virus [TaxId: 11099]}
          Length = 588

 Score = 24.8 bits (54), Expect = 9.6
 Identities = 5/13 (38%), Positives = 6/13 (46%)

Query: 101 TPDGTVVKKKRGR 113
           T DG V  +   R
Sbjct: 300 TADGEVYIRNGQR 312


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 820,178
Number of extensions: 38116
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 18
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.8 bits)