BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8407
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C,
Nmr, Minimized Average Structure
Length = 104
Score = 154 bits (389), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 79/90 (87%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HK GPNLHGL GRKTGQAPGF+YT+AN KGITW ++TL EYLENPK
Sbjct: 13 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPK 72
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DLIAYL++A+
Sbjct: 73 KYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102
>pdb|1CRC|A Chain A, Cytochrome C At Low Ionic Strength
pdb|1CRC|B Chain B, Cytochrome C At Low Ionic Strength
pdb|1HRC|A Chain A, High-Resolution Three-Dimensional Structure Of Horse Heart
Cytochrome C
pdb|3O1Y|A Chain A, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O1Y|B Chain B, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O1Y|C Chain C, Electron Transfer Complexes: Experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|A Chain A, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|B Chain B, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|3O20|C Chain C, Electron Transfer Complexes:experimental Mapping Of The
Redox- Dependent Cytochrome C Electrostatic Surface
pdb|1WEJ|F Chain F, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
Length = 105
Score = 154 bits (388), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 79/90 (87%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HK GPNLHGL GRKTGQAPGF+YT+AN KGITW ++TL EYLENPK
Sbjct: 14 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPK 73
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DLIAYL++A+
Sbjct: 74 KYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103
>pdb|2PCB|B Chain B, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U75|B Chain B, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1AKK|A Chain A, Solution Structure Of Oxidized Horse Heart Cytochrome C,
Nmr, Minimized Average Structure
pdb|1FI7|A Chain A, Solution Structure Of The Imidazole Complex Of Cytochrome
C
pdb|1FI9|A Chain A, Solution Structure Of The Imidazole Complex Of Cytochrome
C
pdb|1I5T|A Chain A, Solution Structure Of Cyanoferricytochrome C
pdb|1LC1|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C In
30% Acetonitrile Solution, Nmr Minimized Average
Structure
pdb|1LC2|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C In
30% Acetonitrile Solution, Nmr 30 Structures
pdb|1M60|A Chain A, Solution Structure Of Zinc-Substituted Cytochrome C
pdb|1OCD|A Chain A, Cytochrome C (Oxidized) From Equus Caballus, Nmr,
Minimized Average Structure
pdb|2FRC|A Chain A, Cytochrome C (Reduced) From Equus Caballus, Nmr, Minimized
Average Structure
pdb|2GIW|A Chain A, Solution Structure Of Reduced Horse Heart Cytochrome C,
Nmr, 40 Structures
pdb|3NBS|A Chain A, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|B Chain B, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|C Chain C, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBS|D Chain D, Crystal Structure Of Dimeric Cytochrome C From Horse Heart
pdb|3NBT|A Chain A, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|B Chain B, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|C Chain C, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|D Chain D, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|E Chain E, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
pdb|3NBT|F Chain F, Crystal Structure Of Trimeric Cytochrome C From Horse
Heart
Length = 104
Score = 154 bits (388), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 79/90 (87%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HK GPNLHGL GRKTGQAPGF+YT+AN KGITW ++TL EYLENPK
Sbjct: 13 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPK 72
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DLIAYL++A+
Sbjct: 73 KYIPGTKMIFAGIKKKTEREDLIAYLKKAT 102
>pdb|2B4Z|A Chain A, Crystal Structure Of Cytochrome C From Bovine Heart At 1.5
A Resolution.
pdb|2YBB|Y Chain Y, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 104
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 79/90 (87%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HK GPNLHGL GRKTGQAPGFSYT+AN KGITW ++TL EYLENPK
Sbjct: 13 KCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPK 72
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DLIAYL++A+
Sbjct: 73 KYIPGTKMIFAGIKKKGEREDLIAYLKKAT 102
>pdb|1J3S|A Chain A, Solution Structure Of Reduced Recombinant Human Cytochrome
C
Length = 104
Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 78/91 (85%)
Query: 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
MKC+QCHT+E GG HK GPNLHGL GRKTGQAPG+SYT AN KGI W +DTL EYLENP
Sbjct: 12 MKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWGEDTLMEYLENP 71
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KKYIPGTKMIF GIKK +ER DLIAYL++A+
Sbjct: 72 KKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102
>pdb|3NWV|A Chain A, Human Cytochrome C G41s
pdb|3NWV|B Chain B, Human Cytochrome C G41s
pdb|3NWV|C Chain C, Human Cytochrome C G41s
pdb|3NWV|D Chain D, Human Cytochrome C G41s
Length = 104
Score = 151 bits (382), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 77/91 (84%)
Query: 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
MKC+QCHT+E GG HK GPNLHGL GRKT QAPG+SYT AN KGI W +DTL EYLENP
Sbjct: 12 MKCSQCHTVEKGGKHKTGPNLHGLFGRKTSQAPGYSYTAANKNKGIIWGEDTLMEYLENP 71
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KKYIPGTKMIF GIKK +ER DLIAYL++A+
Sbjct: 72 KKYIPGTKMIFVGIKKKEERADLIAYLKKAT 102
>pdb|3CYT|O Chain O, Redox Conformation Changes In Refined Tuna Cytochrome C
pdb|3CYT|I Chain I, Redox Conformation Changes In Refined Tuna Cytochrome C
pdb|5CYT|R Chain R, Refinement Of Myoglobin And Cytochrome C
Length = 104
Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 76/90 (84%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN KGI WN DTL EYLENPK
Sbjct: 14 KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPK 73
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DL+AYL+ A+
Sbjct: 74 KYIPGTKMIFAGIKKKGERQDLVAYLKSAT 103
>pdb|1I54|A Chain A, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins
pdb|1I54|B Chain B, Cytochrome C (Tuna) 2fe:1zn Mixed-Metal Porphyrins
pdb|1I55|A Chain A, Cytochrome C (Tuna) With 2zn:1fe Mixed-Metal Porphyrins
pdb|1I55|B Chain B, Cytochrome C (Tuna) With 2zn:1fe Mixed-Metal Porphyrins
pdb|1LFM|A Chain A, Crystal Structure Of Cobalt(Iii)-Substituted Cytochrome C
(Tuna)
pdb|1LFM|B Chain B, Crystal Structure Of Cobalt(Iii)-Substituted Cytochrome C
(Tuna)
Length = 103
Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 76/90 (84%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN KGI WN DTL EYLENPK
Sbjct: 13 KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPK 72
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DL+AYL+ A+
Sbjct: 73 KYIPGTKMIFAGIKKKGERQDLVAYLKSAT 102
>pdb|2AIU|A Chain A, Crystal Structure Of Mouse Testicular Cytochrome C At 1.6
Angstrom
Length = 105
Score = 149 bits (377), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HK GPNL GL GRKTGQAPGFSYT+AN KG+ W+++TL EYLENPK
Sbjct: 14 KCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEETLMEYLENPK 73
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DLI YL+QA+
Sbjct: 74 KYIPGTKMIFAGIKKKSEREDLIKYLKQAT 103
>pdb|1CYC|A Chain A, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C
At 2.3 Angstroms Resolution. Ii. Structure And Function
pdb|1CYC|B Chain B, The Crystal Structure Of Bonito (Katsuo) Ferrocytochrome C
At 2.3 Angstroms Resolution. Ii. Structure And Function
Length = 103
Score = 148 bits (374), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 77/90 (85%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN KGI WN++TL EYLENPK
Sbjct: 13 KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNENTLMEYLENPK 72
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DL+AYL+ A+
Sbjct: 73 KYIPGTKMIFAGIKKKGERQDLVAYLKSAT 102
>pdb|1U74|B Chain B, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|D Chain D, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|2BCN|B Chain B, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
Length = 108
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 75/91 (82%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++AS+
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKASE 108
>pdb|1S6V|B Chain B, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|D Chain D, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 108
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 75/91 (82%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMCFGGLKKEKDRNDLITYLKKATE 108
>pdb|1NMI|A Chain A, Solution Structure Of The Imidazole Complex Of Iso-1
Cytochrome C
pdb|2HV4|A Chain A, Nmr Solution Structure Refinement Of Yeast Iso-1-
Ferrocytochrome C
pdb|2ORL|A Chain A, Solution Structure Of The Cytochrome C- Para-Aminophenol
Adduct
pdb|3TYI|A Chain A, Crystal Structure Of Cytochrome C -
P-Sulfonatocalix[4]arene Complexes
pdb|3TYI|B Chain B, Crystal Structure Of Cytochrome C -
P-Sulfonatocalix[4]arene Complexes
Length = 108
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 75/91 (82%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|1YIC|A Chain A, The Oxidized Saccharomyces Cerevisiae Iso-1-Cytochrome C,
Nmr, 20 Structures
Length = 108
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++AS+
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKASE 108
>pdb|1YFC|A Chain A, Solution Nmr Structure Of A Yeast Iso-1-Ferrocytochrome C
Length = 108
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++AS+
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKASE 108
>pdb|2PCC|B Chain B, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|D Chain D, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2GB8|B Chain B, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
Length = 108
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 73/89 (82%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|2JTI|B Chain B, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 108
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 73/89 (82%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|2YCC|A Chain A, Oxidation State-Dependent Conformational Changes In
Cytochrome C
Length = 108
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|1CSW|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGMKKEKDRNDLITYLKKATE 108
>pdb|2JQR|A Chain A, Solution Model Of Crosslinked Complex Of Cytochrome C And
Adrenodoxin
Length = 108
Score = 132 bits (332), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HK GPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKCGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|2B12|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 73/89 (82%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM + G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAYGGLKKEKDRNDLITYLKKA 106
>pdb|1FHB|A Chain A, Three-Dimensional Solution Structure Of The Cyanide Adduct
Of A Met80ala Variant Of Saccharomyces Cerevisiae Iso-1-
Cytochrome C. Identification Of Ligand-Residue
Interactions In The Distal Heme Cavity
Length = 108
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR++GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRQSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTK F G+KK ++R DLI YL++AS+
Sbjct: 78 KYIPGTKAAFGGLKKEKDRNDLITYLKKASE 108
>pdb|1CSV|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGFKKEKDRNDLITYLKKATE 108
>pdb|3CXH|W Chain W, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|1YEA|A Chain A, Structure Determination And Analysis Of Yeast Iso-2-
Cytochrome C And A Composite Mutant Protein
Length = 112
Score = 131 bits (330), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHTIE GG +KVGPNLHG+ GR +GQ G+SYT+ANI K + W++D++ EYL NP
Sbjct: 22 RCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDEDSMSEYLTNPX 81
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM FAG+KK ++R DLI Y+ +A+K
Sbjct: 82 KYIPGTKMAFAGLKKEKDRNDLITYMTKAAK 112
>pdb|1IRV|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Ile 75
Replaced By Met And Cys 102 Replaced By Thr
Length = 108
Score = 131 bits (330), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KY+PGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYMPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|1KYO|W Chain W, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|3CX5|W Chain W, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|1YCC|A Chain A, High-Resolution Refinement Of Yeast Iso-1-Cytochrome C And
Comparisons With Other Eukaryotic Cytochromes C
Length = 108
Score = 131 bits (330), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CHJ|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGAKKEKDRNDLITYLKKATE 108
>pdb|1CTY|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly
Alters The Local Heme Environment
pdb|1CTZ|A Chain A, Mutation Of Tyrosine-67 In Cytochrome C Significantly
Alters The Local Heme Environment
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + E+L NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEFLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|1CHH|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM + G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAYGGLKKEKDRNDLITYLKKATE 108
>pdb|2B11|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|D Chain D, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 73/89 (82%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM + G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAWGGLKKEKDRNDLITYLKKA 106
>pdb|1CSU|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 131 bits (329), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGCKKEKDRNDLITYLKKATE 108
>pdb|2B0Z|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAIGGLKKEKDRNDLITYLKKA 106
>pdb|1RAQ|A Chain A, The Structure And Function Of Omega Loop A Replacements In
Cytochrome C
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 73/89 (82%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT++ GGA+KVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1LMS|A Chain A, Structural Model For An Alkaline Form Of Ferricytochrome C
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPA 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGT M F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTAMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|2B10|B Chain B, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|D Chain D, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
Length = 108
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMASGGLKKEKDRNDLITYLKKA 106
>pdb|1CSX|A Chain A, Replacements In A Conserved Leucine Cluster In The
Hydrophobic Heme Pocket Of Cytochrome C
Length = 108
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R D I YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDSITYLKKATE 108
>pdb|1CHI|A Chain A, Structural Studies Of The Roles Of Residues 82 And 85 At
The Interactive Face Of Cytochrome C
Length = 108
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM + G KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAYGGAKKEKDRNDLITYLKKATE 108
>pdb|1IRW|A Chain A, Cytochrome C Isozyme 1, Reduced, Mutant With Asn 52
Replaced By Ala And Cys 102 Replaced By Thr
Length = 108
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAAIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|1RAP|A Chain A, The Structure And Function Of Omega Loop A Replacements In
Cytochrome C
Length = 108
Score = 129 bits (324), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 72/89 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT + GGA+KVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTFDQGGANKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|2LIR|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant
P71h In Oxidized States
pdb|2LIT|A Chain A, Nmr Solution Structure Of Yeast Iso-1-Cytochrome C Mutant
P71h In Reduced States
Length = 108
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL N
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNHA 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|1YEB|A Chain A, Structure Determination And Analysis Of Yeast Iso-2-
Cytochrome C And A Composite Mutant Protein
Length = 108
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 71/89 (79%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHTIE GG +KVGPNLHG+ GR +GQ G+SYT+ANI K + W++D++ EYL NP
Sbjct: 18 RCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDANINKNVKWDEDSMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CRG|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 129 bits (323), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|1YTC|A Chain A, Thermodynamic Cycles As Probes Of Structure-Function
Relationships In Unfolded Proteins
Length = 112
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 72/91 (79%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHTIE GG +KVGPNLHG+ GR +GQ G+SYT+A I K + W++D++ EYL NP
Sbjct: 22 RCQQCHTIEEGGPNKVGPNLHGIFGRHSGQVKGYSYTDAIINKNVKWDEDSMSEYLTNPX 81
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM FAG+KK ++R DLI Y+ +A+K
Sbjct: 82 KYIPGTKMAFAGLKKEKDRNDLITYMTKAAK 112
>pdb|1CRH|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 71/89 (79%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
KYIPGTKM F G+KK ++R DLI YL++A
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKA 106
>pdb|1CRI|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
pdb|1CRJ|A Chain A, The Role Of A Conserved Internal Water Molecule And Its
Associated Hydrogen Bond Network In Cytochrome C
Length = 108
Score = 127 bits (319), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 73/91 (80%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + E+L NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDENNMSEFLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKATE 108
>pdb|1CCR|A Chain A, Structure Of Rice Ferricytochrome C At 2.0 Angstroms
Resolution
Length = 112
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 71/90 (78%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT++ G HK GPNL+GL GR++G PG+SY+ A+ + W ++TL++YL NP
Sbjct: 22 KCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPX 81
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKM+F G+ KPQER DLI+YL++A+
Sbjct: 82 KYIPGTKMVFPGLXKPQERADLISYLKEAT 111
>pdb|1CIF|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 126 bits (316), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 72/91 (79%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ G +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMASGGLKKEKDRNDLITYLKKAAE 108
>pdb|1CIG|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 72/91 (79%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ G +GQA G+SYT+A IKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKAAE 108
>pdb|1CIE|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 72/91 (79%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+A IKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMASGGLKKEKDRNDLITYLKKAAE 108
>pdb|1CIH|A Chain A, Structural And Functional Effects Of Multiple Mutations At
Distal Sites In Cytochrome C
Length = 108
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 71/91 (78%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ G +GQA G+SYT+A IKK + W+++ + EYL NP
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGAHSGQAEGYSYTDAIIKKNVLWDENNMSEYLTNPX 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM G+KK ++R DLI YL++A++
Sbjct: 78 KYIPGTKMASGGLKKEKDRNDLITYLKKAAE 108
>pdb|2YK3|A Chain A, Crithidia Fasciculata Cytochrome C
pdb|2YK3|B Chain B, Crithidia Fasciculata Cytochrome C
pdb|2YK3|C Chain C, Crithidia Fasciculata Cytochrome C
Length = 114
Score = 119 bits (299), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 67/87 (77%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+ AQCHT GGA+ VGPNL+GL+GR +G G++Y++AN + G+ W D L YLENP
Sbjct: 24 RAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPX 83
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLE 88
K++PGTKM FAG+KKPQER D+IAYLE
Sbjct: 84 KFMPGTKMSFAGMKKPQERADVIAYLE 110
>pdb|4DY9|A Chain A, Leishmania Major Peroxidase Is A Cytochrome C Peroxidase
pdb|4GED|B Chain B, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 113
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 67/87 (77%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+ AQCHT GG++ VGPNL G++ R +G+ GF+Y++AN + G+ W + L YLENPK
Sbjct: 24 RAAQCHTATKGGSNGVGPNLFGIVNRPSGKVEGFTYSKANAESGVIWTPEVLDVYLENPK 83
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLE 88
K++PGTKM FAGIKKPQER D+IAYLE
Sbjct: 84 KFMPGTKMSFAGIKKPQERADVIAYLE 110
>pdb|1HRO|A Chain A, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
pdb|1HRO|B Chain B, Molecular Structure Of A High Potential Cytochrome C2
Isolated From Rhodopila Globiformis
Length = 106
Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CHT + GA+KVGP+L+G++GR +G PG++Y+EANIK GI W D LF+Y+E+P+K
Sbjct: 19 CITCHT-DIKGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQK 77
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLE 88
+PGTKM + G PQ+R D+IAYLE
Sbjct: 78 IVPGTKMGYPGQPDPQKRADIIAYLE 103
>pdb|1CO6|A Chain A, Crystal Structure Of Ferrocytochrome C2 From
Rhodopseudomonas Viridis
pdb|1IO3|A Chain A, Crystal Structure Of Ferricytochrome C2 From
Rhodopseudomonas Viridis
pdb|1CRY|A Chain A, Application Of An Automatic Molecular Replacement
Procedure To Crystal Structure Of Cytochrome C2 From
Rhodopseudomonas Viridis
Length = 107
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 62/88 (70%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C CH+I G +KVGP L+GL GR +G GF+Y++AN GITW ++ EY+ +PK
Sbjct: 12 QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPK 71
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQ 89
IPGTKMIFAG+K Q+ DLIAY++Q
Sbjct: 72 AKIPGTKMIFAGVKDEQKVSDLIAYIKQ 99
>pdb|1QN2|A Chain A, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|B Chain B, Cytochrome Ch From Methylobacterium Extorquens
pdb|1QN2|C Chain C, Cytochrome Ch From Methylobacterium Extorquens
Length = 100
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENPK 61
C CH E G VGP L G++G K G+ A G+++++A K G+TW++ L ++L +PK
Sbjct: 14 CKACHNFEKNG---VGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPK 70
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
K +PGTKM+F GI P++ D+IAYL+ S
Sbjct: 71 KKVPGTKMVFPGISDPKKVDDIIAYLKTKS 100
>pdb|3M97|X Chain X, Structure Of The Soluble Domain Of Cytochrome C552 With
Its Flexible Linker Segment From Paracoccus
Denitrificans
Length = 140
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KC CH ++ G VGP+L+G++GR GF+Y++ G W + L E+L NPK
Sbjct: 53 KCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 110
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLE 88
+ GTKM FAG+ K ++R +LIAYLE
Sbjct: 111 AVVKGTKMAFAGLPKIEDRANLIAYLE 137
>pdb|1C7M|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The Reduced
State
pdb|1I6D|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The Reduced
State
pdb|1I6E|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The
Oxidized State
Length = 100
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KC CH ++ G VGP+L+G++GR GF+Y++ G W + L E+L NPK
Sbjct: 13 KCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 70
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLE 88
+ GTKM FAG+ K ++R +LIAYLE
Sbjct: 71 AVVKGTKMAFAGLPKIEDRANLIAYLE 97
>pdb|1QL3|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL4|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
Length = 99
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KC CH ++ G VGP+L+G++GR GF+Y++ G W + L E+L NPK
Sbjct: 12 KCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 69
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLE 88
+ GTKM FAG+ K ++R +LIAYLE
Sbjct: 70 AVVKGTKMAFAGLPKIEDRANLIAYLE 96
>pdb|2C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized
Rhodospirillum Rubrum Cytochrome C2
pdb|3C2C|A Chain A, Refinement Of The Crystal Structure Of Oxidized
Rhodospirillum Rubrum Cytochrome C2
Length = 112
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIK---KGITWNKDTLFEYLE 58
KC CHT + GGA+KVGPNL G+ ++Y+E+ + KG+TW + L Y++
Sbjct: 13 KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVK 72
Query: 59 NPKKYI--------PGTKMIFAGIKKPQERGDLIAYL 87
NPK ++ +KM F + K E ++IAYL
Sbjct: 73 NPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYL 108
>pdb|1JDL|A Chain A, Structure Of Cytochrome C2 From Rhodospirillum Centenum
Length = 121
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
KC CH + + VGP L G+I R+ G APGF+Y+ N + G+ W + + YL
Sbjct: 14 KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLP 73
Query: 59 NPKKYIP--------------GTKMIFAGIKKPQERGDLIAYLEQAS 91
+P ++ TKM+F + QER D++AYL+Q S
Sbjct: 74 DPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFS 119
>pdb|1HH7|A Chain A, Refined Crystal Structure Of Cytochrome C2 From
Rhodopseudomonas Palustris At 1.4 Angstrom Resolution
pdb|1I8O|A Chain A, Rhodopseudomonas Palustris Cyt C2 Ammonia Complex At 1.15
Angstrom Resolution
pdb|1I8P|A Chain A, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|B Chain B, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|C Chain C, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1I8P|D Chain D, Structure Determination Of The Ferrocytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|A Chain A, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|B Chain B, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|C Chain C, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
pdb|1FJ0|D Chain D, Structure Determination Of The Ferricytochrome C2 From
Rhodopseudomonas Palustris
Length = 114
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 5 QCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPK 61
QC T + VGP L G++GRK G A GF+Y+ N + G+ W D + YL +P
Sbjct: 12 QCMTCHRADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPN 71
Query: 62 KYIPG--------------TKMIFAGIKKPQERGDLIAYL 87
++ TKM F + Q+R D++AYL
Sbjct: 72 AFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYL 110
>pdb|1COT|A Chain A, X-Ray Structure Of The Cytochrome C2 Isolated From
Paracoccus Denitrificans Refined To 1.7 Angstroms
Resolution
Length = 129
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 26/111 (23%)
Query: 2 KCAQCHTIEA--------GGAHKVGPNLHGLIGRKTGQAPGFSYTE-----ANIKKGITW 48
KC CH I+A GG K GPNL+G++GRK GF Y E A +TW
Sbjct: 14 KCKACHMIQAPDGTDIIKGG--KTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTW 71
Query: 49 NKDTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
+ L EY+ +PK ++ TKM F K + + D++A+L Q S
Sbjct: 72 TEADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQNS 119
>pdb|155C|A Chain A, The Structure Of Paracoccus Denitrificans Cytochrome C550
Length = 135
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 2 KCAQCHTIEA-------GGAHKVGPNLHGLIGRKTGQAPGFSYTE-----ANIKKGITWN 49
KC CH I+A GG K GPNL+G++GRK GF Y E A +TW
Sbjct: 15 KCKACHMIQAPDGTDIKGG--KTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWT 72
Query: 50 KDTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQ 89
+ L EY+ +PK + TKM F K + + D++A+L Q
Sbjct: 73 EANLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQ 117
>pdb|2BGV|X Chain X, X-Ray Structure Of Ferric Cytochrome C-550 From Paracoccus
Versutus
Length = 134
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 26/111 (23%)
Query: 2 KCAQCHTIEA--------GGAHKVGPNLHGLIGRKTGQAPGFSYTE-----ANIKKGITW 48
KC CH ++A GG K GPNL+G++GRK GF Y + A + W
Sbjct: 14 KCKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVW 71
Query: 49 NKDTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
++ L EY+ +PK ++ TKM F K + + D++A+L Q S
Sbjct: 72 SEADLIEYVTDPKPWLVEKTGDSAAKTKMTF---KLGKNQADVVAFLAQHS 119
>pdb|2BH4|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550
From Paracoccus Versutus Determined At 100 K.
pdb|2BH5|X Chain X, X-Ray Structure Of The M100k Variant Of Ferric Cyt C-550
From Paracoccus Versutus Determined At 295 K
Length = 134
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 26/111 (23%)
Query: 2 KCAQCHTIEA--------GGAHKVGPNLHGLIGRKTGQAPGFSYTE-----ANIKKGITW 48
KC CH ++A GG K GPNL+G++GRK GF Y + A + W
Sbjct: 14 KCKACHMVQAPDGTDIVKGG--KTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVW 71
Query: 49 NKDTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
++ L EY+ +PK ++ TK F K + + D++A+L Q S
Sbjct: 72 SEADLIEYVTDPKPWLVEKTGDSAAKTKKTF---KLGKNQADVVAFLAQHS 119
>pdb|2CXB|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|2CXB|B Chain B, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|1L9B|C Chain C, X-ray Structure Of The Cytochrome-c(2)-photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type Ii Co- Crystals
pdb|1L9J|C Chain C, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1L9J|D Chain D, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1CXA|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
pdb|1CXC|A Chain A, Crystallization And X-Ray Structure Determination Of
Cytochrome C2 From Rhodobacter Sphaeroides In Three
Crystal Forms
Length = 124
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 20/109 (18%)
Query: 2 KCAQCHTIE-------AGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIK----KGITWNK 50
+C CH I AG K GPNL+G++GR G F +K KG+ W++
Sbjct: 14 QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDE 73
Query: 51 DTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
+ +Y+++P K++ KM F +KK + ++ AYL+Q +
Sbjct: 74 EHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVA 121
>pdb|1C2N|A Chain A, Cytochrome C2, Nmr, 20 Structures
Length = 137
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2 KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDT 52
KC CH+I E K GPNL+G++GR G P F Y ++ + G W ++
Sbjct: 33 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 92
Query: 53 LFEYLENPKKYI 64
+ Y+++P ++
Sbjct: 93 IATYVKDPGAFL 104
>pdb|1VYD|A Chain A, Crystal Structure Of Cytochrome C2 Mutant G95e
pdb|1VYD|B Chain B, Crystal Structure Of Cytochrome C2 Mutant G95e
Length = 116
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2 KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDT 52
KC CH+I E K GPNL+G++GR G P F Y ++ + G W ++
Sbjct: 12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 71
Query: 53 LFEYLENPKKYI 64
+ Y+++P ++
Sbjct: 72 IATYVKDPGAFL 83
>pdb|1C2R|A Chain A, Molecular Structure Of Cytochrome C2 Isolated From
Rhodobacter Capsulatus Determined At 2.5 Angstroms
Resolution
pdb|1C2R|B Chain B, Molecular Structure Of Cytochrome C2 Isolated From
Rhodobacter Capsulatus Determined At 2.5 Angstroms
Resolution
Length = 116
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 2 KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDT 52
KC CH+I E K GPNL+G++GR G P F Y ++ + G W ++
Sbjct: 12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 71
Query: 53 LFEYLENPKKYI 64
+ Y+++P ++
Sbjct: 72 IATYVKDPGAFL 83
>pdb|1GC5|A Chain A, Crystal Structure Of A Novel Adp-Dependent Glucokinase
From Thermococcus Litoralis
Length = 467
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 19 PNLHGLIGRKTGQAPGFSYTEAN-IKKGITWN-KDTLFEYLENPKKYIPGTKMIFAGIKK 76
PN+ G++ Y +A+ ++K +T K+ +FE +ENP + I + + GI +
Sbjct: 28 PNVKGVLLAYNTNIDAIKYLDADDLEKRVTEKGKEKVFEIIENPPEKISSIEELLGGILR 87
Query: 77 PQERGDLIAYLEQASK 92
+ G + + ++ +
Sbjct: 88 SIKLGKAMEWFVESEE 103
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 7 HTIEAGGAHKVGPNLHGLIGRKTGQAPGFSY 37
H++ A A + G L+GL+GR TG P Y
Sbjct: 153 HSLGAHTAGEAGKRLNGLVGRITGLDPAEPY 183
>pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.coli In Complex With
Substrate Analogue Oxamate
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1MZO|A Chain A, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
pdb|1MZO|B Chain B, Crystal Structure Of Pyruvate Formate-Lyase With Pyruvate
Length = 759
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 27 RKT---GQAPGFSYTEANIKKGI-----TWNKDTLFEYLENPKKY------IPGTKMIFA 72
RKT G G+ + EA+I+ G N++ L + +ENP+KY + G + F
Sbjct: 681 RKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFN 740
Query: 73 GIKKPQER 80
+ K Q++
Sbjct: 741 SLTKEQQQ 748
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 27 RKT---GQAPGFSYTEANIKKGI-----TWNKDTLFEYLENPKKY------IPGTKMIFA 72
RKT G G+ + EA+I+ G N++ L + +ENP+KY + G + F
Sbjct: 681 RKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFN 740
Query: 73 GIKKPQER 80
+ K Q++
Sbjct: 741 SLTKEQQQ 748
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 16 KVGPNLHGLIGRKTGQAPGFSYTEANIKK-----GITWNKDTLFEYLENPKKYIPGTK 68
KV ++HGL G+K G P F T + + + D+ +EYL K++I G K
Sbjct: 184 KVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLL--KQWIQGGK 239
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 16 KVGPNLHGLIGRKTGQAPGFSYTEANIKK-----GITWNKDTLFEYLENPKKYIPGTK 68
KV ++HGL G+K G P F T + + + D+ +EYL K++I G K
Sbjct: 184 KVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLL--KQWIQGGK 239
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 79 ERGDLIAYLEQASK 92
ER DLIAYL+QA+K
Sbjct: 4 ERADLIAYLKQATK 17
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 16 KVGPNLHGLIGRKTGQAPGFSYTEANIKK-----GITWNKDTLFEYLENPKKYIPGTK 68
KV ++HGL G+K G P F T + + + D+ +EYL K++I G K
Sbjct: 262 KVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLL--KQWIQGGK 317
>pdb|1AYG|A Chain A, Solution Structure Of Cytochrome C-552, Nmr, 20
Structures
pdb|2AI5|A Chain A, Solution Structure Of Cytochrome C552, Determined By
Distributed Computing Implementation For Nmr Data
Length = 80
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKG 45
C CH ++A KVGP + + G+ Y IKKG
Sbjct: 10 CMACHDLKA---KKVGPAYADVAKKYAGRKDAVDYLAGKIKKG 49
>pdb|1YNR|A Chain A, Crystal Structure Of The Cytochrome C-552 From
Hydrogenobacter Thermophilus At 2.0 Resolution
pdb|1YNR|B Chain B, Crystal Structure Of The Cytochrome C-552 From
Hydrogenobacter Thermophilus At 2.0 Resolution
pdb|1YNR|C Chain C, Crystal Structure Of The Cytochrome C-552 From
Hydrogenobacter Thermophilus At 2.0 Resolution
pdb|1YNR|D Chain D, Crystal Structure Of The Cytochrome C-552 From
Hydrogenobacter Thermophilus At 2.0 Resolution
pdb|3VYM|A Chain A, Dimeric Hydrogenobacter Thermophilus Cytochrome C552
Length = 80
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKG 45
C CH ++A KVGP + + G+ Y IKKG
Sbjct: 10 CMACHDLKA---KKVGPAYADVAKKYAGRKDAVDYLAGKIKKG 49
>pdb|1DVV|A Chain A, Solution Structure Of The Quintuple Mutant Of Cytochrome
C- 551 From Pseudomonas Aeruginosa
Length = 82
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKG 45
C CH I+ VGP + + GQA +Y IK G
Sbjct: 12 CMACHAIDT---KMVGPAYKDVAAKYAGQAGAEAYLAQRIKNG 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,062,071
Number of Sequences: 62578
Number of extensions: 119676
Number of successful extensions: 355
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 82
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)