Query psy8407
Match_columns 92
No_of_seqs 184 out of 1023
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 17:58:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m97_X Cytochrome C-552, cytoc 100.0 2.8E-30 9.7E-35 162.3 7.4 89 1-91 52-140 (140)
2 1cxc_A Cytochrome C2; electron 100.0 4.2E-30 1.4E-34 158.4 5.1 90 2-92 14-122 (124)
3 1vyd_A Cytochrome C2; electron 100.0 6.8E-30 2.3E-34 156.0 4.6 88 2-92 12-116 (116)
4 1ycc_A Cytochrome C; electron 99.9 5.7E-28 1.9E-32 144.5 7.2 91 2-92 18-108 (108)
5 155c_A Cytochrome C550; electr 99.9 7E-28 2.4E-32 150.5 7.5 87 2-91 15-119 (135)
6 2bh4_X Cytochrome C-550; C-typ 99.9 1.5E-28 5.1E-33 153.3 3.9 87 2-91 14-119 (134)
7 2w9k_A Cytochrome C, cytochrom 99.9 1.2E-27 3.9E-32 144.6 7.2 91 2-92 24-114 (114)
8 1i54_A Cytochrome C; zinc-porp 99.9 2.1E-27 7.2E-32 140.7 7.8 91 2-92 13-103 (103)
9 1ccr_A Cytochrome C; electron 99.9 2.4E-27 8.3E-32 142.6 7.7 91 2-92 22-112 (112)
10 1hro_A Cytochrome C2; electron 99.9 3E-27 1E-31 141.0 7.6 90 1-91 17-106 (106)
11 1co6_A Protein (cytochrome C2) 99.9 2.7E-27 9.1E-32 141.6 7.3 90 3-92 13-102 (107)
12 3c2c_A Cytochrome C2; electron 99.9 2.7E-27 9.3E-32 142.6 5.7 89 2-91 13-112 (112)
13 1qn2_A Cytochrome CH; electron 99.9 1.2E-26 4.1E-31 137.2 7.4 87 2-91 13-100 (100)
14 1jdl_A C552, cytochrome C2, IS 99.9 1E-26 3.6E-31 141.5 5.7 91 1-92 13-120 (121)
15 1c2n_A Cytochrome C2; electron 99.9 6.1E-27 2.1E-31 146.1 4.4 88 2-92 33-137 (137)
16 1i8o_A Cytochrome C2; electron 99.9 2.4E-26 8.1E-31 139.3 4.4 86 2-91 12-114 (114)
17 1w2l_A Cytochrome oxidase subu 99.8 8.7E-19 3E-23 102.4 6.6 79 2-91 17-99 (99)
18 2c1d_B SOXX; sulfur oxidation, 99.7 2E-18 6.8E-23 106.9 5.6 71 2-92 40-137 (137)
19 1h32_B Cytochrome C, SOXX; ele 99.7 1.6E-18 5.5E-23 107.4 4.2 71 2-92 41-138 (138)
20 1ayg_A Cytochrome C-552; elect 99.7 4.6E-18 1.6E-22 96.4 5.2 72 1-91 8-80 (80)
21 2l4d_A SCO1/SENC family protei 99.7 5.5E-18 1.9E-22 100.6 2.6 69 2-91 13-97 (110)
22 2d0s_A Cytochrome C, cytochrom 99.7 1.6E-17 5.5E-22 93.8 4.3 71 1-91 8-79 (79)
23 3o0r_C Nitric oxide reductase 99.7 6.6E-17 2.3E-21 100.7 6.3 73 2-91 60-133 (146)
24 3mk7_B Cytochrome C oxidase, C 99.7 1.9E-17 6.4E-22 108.5 3.5 70 2-91 64-196 (203)
25 2exv_A Cytochrome C-551; alpha 99.7 3.6E-17 1.2E-21 92.7 3.9 72 1-91 10-82 (82)
26 1cch_A Cytochrome C551; electr 99.7 6.9E-17 2.4E-21 91.4 4.2 71 2-91 11-82 (82)
27 3oa8_B SOXX; cytochrome, sulfu 99.6 2.5E-16 8.6E-21 104.2 6.7 72 2-91 124-203 (208)
28 1e29_A Cytochrome C549; electr 99.6 3.3E-17 1.1E-21 101.7 0.6 75 2-91 36-123 (135)
29 1a56_A C-551, ferricytochrome 99.6 7.1E-17 2.4E-21 91.5 0.9 72 2-91 9-81 (81)
30 1c75_A Cytochrome C-553; heme, 99.6 7.3E-16 2.5E-20 85.5 3.7 62 2-91 10-71 (71)
31 3cp5_A Cytochrome C; electron 99.6 2.9E-16 9.8E-21 95.1 2.2 66 2-91 44-121 (124)
32 1f1c_A Cytochrome C549; dimeri 99.6 2.2E-15 7.4E-20 91.7 4.1 75 2-91 34-121 (129)
33 2yev_B Cytochrome C oxidase su 99.3 4.9E-16 1.7E-20 109.0 0.0 79 2-91 246-325 (337)
34 2zxy_A Cytochrome C552, cytoch 99.5 3E-15 1E-19 85.1 2.2 69 2-91 11-87 (87)
35 1cno_A Cytochrome C552; electr 99.5 1.6E-15 5.6E-20 86.9 0.5 71 2-92 13-84 (87)
36 1c53_A Cytochrome C553; electr 99.5 1.7E-14 5.7E-19 81.4 3.6 65 2-90 9-79 (79)
37 2zzs_A Cytochrome C554; C-type 99.4 1.7E-14 5.8E-19 84.8 1.5 67 2-91 33-103 (103)
38 2d0w_A Cytochrome CL; electron 99.4 1.8E-13 6.1E-18 87.6 5.7 68 2-91 58-126 (170)
39 1wve_C 4-cresol dehydrogenase 99.4 1.8E-13 6.3E-18 77.4 5.0 60 2-92 14-75 (80)
40 2c8s_A Cytochrome C-L; HAEM, h 99.4 3E-13 1E-17 86.9 6.3 68 2-91 64-132 (172)
41 2gc4_D Cytochrome C-L; electro 99.4 3.4E-13 1.2E-17 84.2 5.8 68 2-91 56-124 (147)
42 3ph2_B Cytochrome C6; photosyn 99.4 6.9E-14 2.4E-18 79.3 1.7 68 2-91 14-82 (86)
43 1gdv_A Cytochrome C6; RED ALGA 99.4 1.1E-13 3.7E-18 78.3 1.1 68 2-91 13-81 (85)
44 1f1f_A Cytochrome C6; heme, pr 99.3 2E-13 6.7E-18 77.9 1.1 72 2-91 13-85 (89)
45 2ce0_A Cytochrome C6; chloropl 99.3 3.8E-12 1.3E-16 74.6 6.5 73 2-91 15-95 (105)
46 3cu4_A Cytochrome C family pro 99.3 7.6E-13 2.6E-17 75.2 3.2 40 47-91 43-84 (85)
47 1ls9_A Cytochrome C6; omega lo 99.3 1.7E-12 5.7E-17 74.5 3.8 69 2-91 16-86 (91)
48 3dmi_A Cytochrome C6; electron 99.3 5.1E-13 1.7E-17 76.0 1.3 70 2-91 13-83 (88)
49 1mz4_A Cytochrome C550; PSII a 99.3 1.1E-12 3.9E-17 80.8 2.7 45 47-91 66-123 (137)
50 1c52_A Cytochrome-C552; electr 99.3 6E-13 2.1E-17 81.7 1.4 74 3-91 11-91 (131)
51 1m70_A Cytochrome C4; electron 99.3 8.6E-13 2.9E-17 84.6 1.4 70 2-91 118-190 (190)
52 1cyi_A Cytochrome C6, cytochro 99.3 2E-12 7E-17 73.9 2.6 39 48-91 44-83 (90)
53 1c6r_A Cytochrome C6; electron 99.3 3E-12 1E-16 73.0 3.2 39 48-91 45-84 (89)
54 1kb0_A Quinohemoprotein alcoho 99.2 9.3E-13 3.2E-17 98.6 0.6 67 2-91 603-670 (677)
55 2zon_G Cytochrome C551; nitrit 99.2 7.3E-13 2.5E-17 75.6 -0.3 67 2-92 19-87 (87)
56 3dp5_A OMCF, cytochrome C fami 99.2 1.5E-11 5E-16 72.2 4.9 38 48-90 58-97 (99)
57 1gks_A Cytochrome C551; haloph 99.2 6.7E-12 2.3E-16 70.6 3.3 64 2-90 13-77 (78)
58 1w5c_T Cytochrome C-550; photo 99.2 4.4E-12 1.5E-16 80.3 2.3 43 49-91 94-149 (163)
59 3mk7_C Cytochrome C oxidase, C 99.2 1.2E-11 4.1E-16 85.7 4.3 69 2-92 232-303 (311)
60 1h1o_A Cytochrome C-552; elect 99.2 2.4E-12 8.3E-17 82.1 -0.0 64 2-90 118-183 (183)
61 3dr0_A Cytochrome C6; photosyn 99.1 3.4E-11 1.2E-15 68.7 3.7 38 49-91 49-88 (93)
62 1kx2_A Mono-heme C-type cytoch 99.1 2.5E-11 8.6E-16 68.6 2.8 66 2-91 13-81 (81)
63 3vrd_A FCCA subunit, flavocyto 99.1 1.4E-11 4.9E-16 78.9 1.5 67 1-91 9-77 (174)
64 1yiq_A Quinohemoprotein alcoho 99.0 4.9E-11 1.7E-15 89.5 2.2 65 2-91 605-670 (689)
65 1m70_A Cytochrome C4; electron 99.0 1.1E-10 3.6E-15 74.8 3.3 71 1-91 12-89 (190)
66 1kv9_A Type II quinohemoprotei 99.0 4.2E-11 1.4E-15 89.5 1.6 66 2-91 590-656 (668)
67 1nir_A Nitrite reductase; hemo 99.0 4.6E-11 1.6E-15 87.4 1.2 64 2-91 46-113 (543)
68 2zoo_A Probable nitrite reduct 99.0 5.5E-11 1.9E-15 85.2 0.6 70 2-91 349-425 (442)
69 1cc5_A Cytochrome C5; electron 98.9 3.4E-10 1.2E-14 64.4 1.5 68 1-90 13-83 (83)
70 1h1o_A Cytochrome C-552; elect 98.9 2E-10 6.9E-15 73.1 0.6 71 1-91 14-87 (183)
71 1qks_A Cytochrome CD1 nitrite 98.9 6.8E-10 2.3E-14 82.0 2.7 65 2-91 64-131 (567)
72 2xts_B Cytochrome; oxidoreduct 98.9 2.1E-09 7E-14 70.7 4.4 74 2-91 45-121 (205)
73 3mk7_C Cytochrome C oxidase, C 98.8 9.1E-10 3.1E-14 76.2 1.9 67 2-91 142-210 (311)
74 3vrd_A FCCA subunit, flavocyto 98.8 9.8E-10 3.4E-14 70.3 0.4 70 2-91 100-174 (174)
75 1zzh_A Cytochrome C peroxidase 98.2 4E-06 1.4E-10 58.6 7.5 39 44-91 265-303 (328)
76 1nml_A DI-HAEM cytochrome C pe 98.2 4.9E-06 1.7E-10 58.0 7.0 39 44-91 262-300 (326)
77 3o5c_A Cytochrome C551 peroxid 98.2 1.5E-06 5E-11 60.7 4.2 39 44-91 253-291 (320)
78 2c1v_A DI-HAEM cytochrome C pe 98.2 3.4E-06 1.2E-10 59.2 5.7 39 44-91 276-314 (338)
79 2vhd_A Cytochrome C551 peroxid 98.1 3.7E-06 1.3E-10 58.6 5.2 38 45-91 263-300 (323)
80 1iqc_A DI-heme peroxidase; pro 98.0 7.5E-06 2.6E-10 56.7 5.1 17 75-91 267-283 (308)
81 1pp9_D Cytochrome C-1, cytochr 97.9 4.1E-05 1.4E-09 51.5 7.1 42 49-90 123-193 (241)
82 3oa8_A SOXA; cytochrome, sulfu 97.9 4.1E-06 1.4E-10 57.3 2.2 71 2-91 70-147 (275)
83 3a9f_A Cytochrome C; alpha hel 97.9 3.5E-06 1.2E-10 49.0 1.6 20 69-89 71-90 (92)
84 3cx5_D Cytochrome C1, heme pro 97.9 3.9E-05 1.3E-09 51.8 6.8 42 49-90 126-197 (248)
85 3hq9_A Cytochrome C551 peroxid 97.9 2.3E-05 7.9E-10 55.2 5.8 38 45-91 285-322 (345)
86 1e8e_A Cytochrome C''; oxidore 97.9 7.6E-06 2.6E-10 49.9 2.8 18 75-92 104-121 (124)
87 2blf_B SORB, sulfite\:cytochro 97.9 4.9E-06 1.7E-10 46.9 1.6 16 74-89 64-79 (81)
88 4aan_A Cytochrome C551 peroxid 97.7 4.2E-05 1.4E-09 53.8 4.8 39 44-91 279-317 (341)
89 2yiu_B Cytochrome C1, heme pro 97.7 6.8E-05 2.3E-09 50.9 5.2 14 77-90 206-219 (263)
90 1h32_A SOXA, diheme cytochrome 97.7 1.7E-05 5.8E-10 53.6 2.2 18 75-92 233-250 (261)
91 1jmx_A Amine dehydrogenase; ox 97.6 1.3E-05 4.4E-10 58.5 1.4 20 71-90 48-67 (494)
92 3sjl_A Methylamine utilization 97.6 0.0003 1E-08 50.0 8.0 17 75-91 334-350 (373)
93 2c1d_A SOXA; sulfur oxidation, 97.3 0.0001 3.4E-09 49.9 2.4 23 69-91 229-252 (264)
94 1pby_A Quinohemoprotein amine 97.3 0.00014 4.9E-09 52.9 3.1 15 75-89 51-65 (489)
95 1dw0_A Cytochrome C; asparagin 97.0 0.00017 5.8E-09 43.2 1.2 36 49-90 77-112 (112)
96 3oa8_A SOXA; cytochrome, sulfu 96.8 0.00048 1.6E-08 47.0 1.7 18 74-91 246-263 (275)
97 2qjy_B Cytochrome C1; cytochro 96.7 0.0013 4.3E-08 44.9 3.6 14 77-90 205-218 (269)
98 1zrt_D Cytochrome C1; cytochro 96.6 0.0087 3E-07 40.5 7.0 14 77-90 203-216 (258)
99 2c1d_A SOXA; sulfur oxidation, 96.5 0.00088 3E-08 45.2 1.5 17 75-91 129-145 (264)
100 1h32_A SOXA, diheme cytochrome 95.7 0.0022 7.6E-08 43.2 0.4 17 75-91 126-142 (261)
101 1iqc_A DI-heme peroxidase; pro 95.6 0.025 8.7E-07 38.9 5.6 17 74-90 133-149 (308)
102 1zzh_A Cytochrome C peroxidase 95.4 0.019 6.5E-07 39.9 4.4 18 74-91 150-167 (328)
103 2c1v_A DI-HAEM cytochrome C pe 95.3 0.034 1.2E-06 38.9 5.3 18 74-91 161-178 (338)
104 2vhd_A Cytochrome C551 peroxid 95.0 0.033 1.1E-06 38.6 4.6 18 74-91 147-164 (323)
105 3o5c_A Cytochrome C551 peroxid 92.9 0.21 7.3E-06 34.6 5.4 15 76-90 142-157 (320)
106 2fwt_A DHC, diheme cytochrome 88.7 0.64 2.2E-05 28.1 4.0 10 2-11 12-21 (125)
107 2fw5_A DHC, diheme cytochrome 88.2 0.72 2.4E-05 28.4 4.0 15 76-90 59-73 (139)
108 3b47_A GSU0582, methyl-accepti 82.9 0.37 1.3E-05 29.0 0.8 10 1-10 103-112 (134)
109 3b42_A GSU0935, methyl-accepti 79.8 0.45 1.5E-05 28.5 0.4 9 1-9 104-112 (135)
110 2gc4_D Cytochrome C-L; electro 78.1 0.69 2.3E-05 27.8 0.9 24 68-91 11-36 (147)
111 1ogy_B Diheme cytochrome C NAP 71.3 1.8 6.2E-05 26.3 1.5 10 2-11 57-66 (130)
112 1oqe_K Tumor necrosis factor r 66.5 0.76 2.6E-05 20.8 -0.7 11 1-11 15-25 (31)
113 3u99_A Diheme cytochrome C; cy 61.3 1 3.5E-05 28.0 -1.0 10 2-11 18-27 (148)
114 2kvc_A Putative uncharacterize 60.9 2.8 9.4E-05 24.5 0.8 38 52-89 10-53 (103)
115 2lky_A Uncharacterized protein 59.5 3 0.0001 24.7 0.8 39 51-89 11-55 (112)
116 3ol3_A Putative uncharacterize 58.5 6.2 0.00021 23.1 2.1 39 51-89 14-58 (107)
117 1jni_A NAPB;, diheme cytochrom 57.7 1.2 4E-05 26.9 -1.2 10 2-11 56-65 (123)
118 2es6_A VTS1P; SAM domain, prot 55.8 5.8 0.0002 23.0 1.6 27 64-90 15-41 (101)
119 2hfg_R Tumor necrosis factor r 49.5 2.4 8.1E-05 21.3 -0.6 11 1-11 27-37 (51)
120 2je2_A Cytochrome P460; heme P 49.1 2.1 7E-05 27.5 -1.1 10 2-11 136-145 (186)
121 2m0n_A Putative uncharacterize 48.3 20 0.00069 21.1 3.2 14 75-88 41-54 (112)
122 1p0t_A Tumor necrosis factor r 48.0 2.9 0.0001 21.8 -0.4 11 1-11 30-40 (63)
123 4fs3_A Enoyl-[acyl-carrier-pro 46.8 15 0.0005 23.8 2.7 20 70-89 216-235 (256)
124 1ci3_M Protein (cytochrome F); 45.2 5 0.00017 26.7 0.2 10 2-11 20-29 (249)
125 1b4u_A LIGA, LIGB, protocatech 45.1 6.3 0.00021 24.2 0.6 31 49-85 46-76 (139)
126 1hcz_A Cytochrome F; electron 45.0 5 0.00017 26.7 0.2 10 2-11 20-29 (252)
127 1e2w_A Cytochrome F; electron 45.0 5.1 0.00017 26.7 0.2 10 2-11 20-29 (251)
128 4fgs_A Probable dehydrogenase 44.6 15 0.00052 24.5 2.5 20 70-89 234-253 (273)
129 4h15_A Short chain alcohol deh 42.0 19 0.00065 23.6 2.7 21 69-89 220-240 (261)
130 3ged_A Short-chain dehydrogena 42.0 22 0.00074 23.3 3.0 20 70-89 195-214 (247)
131 1vf5_C Cytochrome F; photosynt 41.6 6.1 0.00021 26.8 0.2 9 3-11 22-30 (289)
132 3ml1_B NAPB, diheme cytochrome 40.1 14 0.00049 22.4 1.7 10 2-11 98-107 (135)
133 4b79_A PA4098, probable short- 39.5 19 0.00065 23.6 2.4 20 70-89 203-222 (242)
134 3r1f_A ESX-1 secretion-associa 37.5 24 0.00081 20.9 2.4 21 71-92 109-129 (135)
135 4hp8_A 2-deoxy-D-gluconate 3-d 37.5 19 0.00064 23.8 2.1 20 70-89 208-227 (247)
136 2b6g_A VTS1P; alpha-helix, pen 37.1 5.5 0.00019 23.8 -0.5 27 65-91 34-60 (119)
137 1wdd_S Ribulose bisphosphate c 35.7 72 0.0024 19.1 4.4 22 69-90 15-36 (128)
138 3oao_A Uncharacterized protein 35.0 22 0.00074 21.8 2.0 16 74-89 79-94 (147)
139 2czs_A DHC2, cytochrome C, put 34.5 5.7 0.00019 21.9 -0.7 10 1-10 35-44 (80)
140 3cao_A Cytochrome C3; tetrahem 34.5 11 0.00037 21.3 0.5 10 1-10 57-66 (103)
141 2ght_A Carboxy-terminal domain 33.2 25 0.00086 21.6 2.1 23 69-91 148-170 (181)
142 4fn4_A Short chain dehydrogena 32.1 32 0.0011 22.6 2.6 17 73-89 218-234 (254)
143 1ft5_A Cytochrome C554; heme-s 32.1 13 0.00043 24.0 0.6 10 2-11 59-68 (211)
144 2k3v_A Tetraheme cytochrome C- 32.1 14 0.00048 20.1 0.7 10 2-11 34-43 (86)
145 2jxm_B Cytochrome F; copper, e 31.8 5 0.00017 26.7 -1.4 10 2-11 20-29 (249)
146 1gyo_A Cytochrome C3, A dimeri 31.8 13 0.00045 21.3 0.6 11 1-11 50-60 (109)
147 1m1q_A Small tetraheme cytochr 31.1 13 0.00046 20.3 0.5 10 2-11 57-66 (91)
148 2d3d_A VTS1 protein; RNA bindi 30.9 7.4 0.00025 22.0 -0.6 24 67-90 5-28 (88)
149 1b0n_A Protein (SINR protein); 30.2 26 0.00087 19.2 1.6 17 75-91 90-106 (111)
150 2c6a_A Ubiquitin-protein ligas 29.9 25 0.00084 17.4 1.3 11 1-11 28-38 (46)
151 4gkb_A 3-oxoacyl-[acyl-carrier 29.3 41 0.0014 22.0 2.7 17 73-89 217-233 (258)
152 4dvc_A Thiol:disulfide interch 29.0 32 0.0011 20.3 2.0 18 74-91 167-184 (184)
153 2zdj_A Hypothetical protein TT 28.0 37 0.0013 17.9 1.8 17 74-90 17-33 (69)
154 3llk_A Sulfhydryl oxidase 1; d 27.3 51 0.0018 22.1 2.9 13 47-59 236-248 (261)
155 4fjo_A DNA repair protein REV1 26.9 44 0.0015 18.8 2.2 29 50-90 15-43 (97)
156 3he5_A Synzip1; heterodimeric 26.6 32 0.0011 16.5 1.3 9 80-88 29-37 (49)
157 1svd_M Ribulose bisphosphate c 26.3 1E+02 0.0035 17.9 4.0 21 69-89 16-36 (110)
158 1sd4_A Penicillinase repressor 26.1 51 0.0018 18.3 2.5 17 75-91 108-124 (126)
159 3vu7_H DNA repair protein REV1 25.4 46 0.0016 19.7 2.2 29 50-90 42-70 (124)
160 3pvt_A Phenylacetic acid degra 25.3 1.3E+02 0.0045 20.6 4.7 35 50-90 6-40 (311)
161 1q90_A Apocytochrome F; membra 25.2 7.8 0.00027 26.3 -1.4 9 3-11 21-29 (292)
162 4g81_D Putative hexonate dehyd 24.9 23 0.00078 23.3 0.8 20 70-89 215-234 (255)
163 2b4n_A Gastric inhibitory poly 24.8 68 0.0023 15.4 2.4 18 73-90 12-29 (42)
164 3c0t_B Mediator of RNA polymer 24.8 56 0.0019 14.4 2.2 16 77-92 7-22 (33)
165 3ayf_A Nitric oxide reductase; 24.6 16 0.00055 28.4 0.1 22 1-23 79-100 (800)
166 3lt0_A Enoyl-ACP reductase; tr 24.5 59 0.002 21.6 2.9 21 69-89 285-305 (329)
167 3zxw_B Ribulose bisphosphate c 24.3 79 0.0027 18.6 3.1 21 69-89 13-33 (118)
168 1gk8_I Ribulose bisphosphate c 24.3 1.3E+02 0.0043 18.3 4.4 21 69-89 15-35 (140)
169 1xv3_A Penaeidin-4D, PEN-4D; a 23.8 27 0.00093 17.2 0.8 8 3-10 23-30 (47)
170 1d4d_A Flavocytochrome C fumar 23.6 23 0.0008 25.8 0.7 9 2-10 15-23 (572)
171 3pmq_A Decaheme cytochrome C M 23.4 24 0.00083 26.9 0.8 10 1-10 544-553 (669)
172 3obc_A Pyrophosphatase; dimeri 23.3 50 0.0017 19.4 2.1 14 77-90 74-87 (118)
173 2gqc_A Rhomboid intramembrane 23.2 8.9 0.0003 20.4 -1.2 16 75-90 10-25 (70)
174 1y0p_A Fumarate reductase flav 22.7 22 0.00077 25.7 0.5 7 3-9 82-88 (571)
175 3h4n_A Cytochrome C7, cytochro 22.4 22 0.00075 18.8 0.3 9 2-10 27-35 (72)
176 1qo8_A Flavocytochrome C3 fuma 22.4 23 0.00079 25.6 0.5 8 3-10 79-86 (566)
177 3gj3_B Nuclear pore complex pr 22.0 38 0.0013 15.3 1.1 9 2-10 23-31 (33)
178 1bwv_S Rubisco, protein (ribul 21.9 1E+02 0.0036 18.6 3.3 22 69-90 8-29 (138)
179 2j7a_A Cytochrome C nitrite re 21.8 28 0.00095 25.5 0.8 9 1-9 323-331 (500)
180 2rdz_A Cytochrome C-552; decah 21.6 20 0.00067 25.9 0.0 9 2-10 182-190 (452)
181 3h33_A Cytochrome C7, cytochro 21.3 30 0.001 18.6 0.7 9 2-10 26-34 (75)
182 3ubr_A Cytochrome C-552; DECA- 21.2 26 0.0009 25.3 0.6 9 2-10 167-175 (439)
183 3ouq_A Cytochrome C family pro 21.0 24 0.00083 21.6 0.4 9 2-10 57-65 (161)
184 1bxn_I Rubisco, protein (ribul 20.9 1E+02 0.0035 18.7 3.1 22 69-90 8-29 (139)
185 2ozy_A Cytochrome C-type prote 20.9 27 0.00091 21.1 0.5 10 2-11 112-121 (163)
186 3v2g_A 3-oxoacyl-[acyl-carrier 20.7 74 0.0025 20.5 2.7 17 73-89 236-252 (271)
187 1sp3_A Cytochrome C, putative; 20.5 31 0.0011 24.6 0.8 7 2-8 208-214 (443)
188 3lf2_A Short chain oxidoreduct 20.4 78 0.0027 20.1 2.8 21 69-89 224-244 (265)
189 3oue_A Cytochrome C family pro 20.2 26 0.00089 21.6 0.4 10 1-10 56-65 (158)
190 3v2d_4 50S ribosomal protein L 20.2 29 0.001 18.6 0.5 10 2-11 35-44 (71)
191 3h34_A Cytochrome C7, cytochro 20.1 28 0.00095 18.4 0.4 8 2-9 26-33 (70)
192 1ehj_A Cytochrome C7; multi-he 20.1 30 0.001 18.1 0.5 8 3-10 26-33 (68)
No 1
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=99.96 E-value=2.8e-30 Score=162.32 Aligned_cols=89 Identities=43% Similarity=0.854 Sum_probs=83.2
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER 80 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~ 80 (92)
++|.+||+++ +.+.+||+|.++.+|..++.++|.|+.+++..++.|++++|.+||++|+.+.|++.|||.++++++|+
T Consensus 52 ~~C~~CH~~~--~~~~~gP~L~gv~~r~~~~~~g~~Ys~al~~~g~~w~~e~L~~~I~~P~~~~pgt~Mp~~gllsdedi 129 (140)
T 3m97_X 52 GKCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDR 129 (140)
T ss_dssp GGTTTTCCSS--SCCSSSCCCTTCTTCBTTCSTTCCCCHHHHHHCSBCCHHHHHHHHHCHHHHSTTCSCCCCCCCSHHHH
T ss_pred HhhhhhcCCC--CCCCcCCCccccccccccccccccccHhhhhccccCCHHHHHHHHhcccccCCCCCCCCCCCCCHHHH
Confidence 4799999994 35689999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||++|+
T Consensus 130 ~aLiAYL~sLk 140 (140)
T 3m97_X 130 ANLIAYLEGQQ 140 (140)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHHcC
Confidence 99999999986
No 2
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=99.96 E-value=4.2e-30 Score=158.42 Aligned_cols=90 Identities=36% Similarity=0.793 Sum_probs=81.3
Q ss_pred CCccCccccC-------CCCCCCCCCccCccCCCCCCCCCC-cchHHhh---hcCccccHHHHHHHHhCCCCCCCC----
Q psy8407 2 KCAQCHTIEA-------GGAHKVGPNLHGLIGRKTGQAPGF-SYTEANI---KKGITWNKDTLFEYLENPKKYIPG---- 66 (92)
Q Consensus 2 ~C~~CH~~~~-------~~~~~~GP~L~~i~~r~~~~~~g~-~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~---- 66 (92)
+|++||++.+ .+.+.+||+|.+|++|..++.++| .|+.+++ ..++.|++++|.+||++|+.++|+
T Consensus 14 ~C~~CH~v~~~~g~~~~g~~~~vGP~L~gv~~r~~~~~~g~~~ys~~l~~~~~~g~~w~~~~l~~~l~~P~~~~pg~~~d 93 (124)
T 1cxc_A 14 QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEEHFVQYVQDPTKFLKEYTGD 93 (124)
T ss_dssp GGGGTCCEECTTSCEEECCSCCSSCCCTTCTTCBTTCCTTCCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHSC
T ss_pred hhhhhcCCCCccccccccCCCCCCCCCcCccCCcccccccHHHhhHHHHhhhhcCccCCHHHHHHHHhChHhhCCCcccC
Confidence 6999999985 235689999999999999999999 8999994 578999999999999999999998
Q ss_pred ----CCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407 67 ----TKMIFAGIKKPQERGDLIAYLEQASK 92 (92)
Q Consensus 67 ----~~Mp~~~~~~~~d~~~liayL~sl~~ 92 (92)
+.|||. +++++|+++||+||++++.
T Consensus 94 ~~a~t~M~~~-l~~~~d~~dliaYL~sl~~ 122 (124)
T 1cxc_A 94 AKAKGKMTFK-LKKEADAHNIWAYLQQVAV 122 (124)
T ss_dssp TTCCCSCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred cccCCCCCCc-cCCHHHHHHHHHHHHHcCC
Confidence 999998 8789999999999999863
No 3
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=99.96 E-value=6.8e-30 Score=156.04 Aligned_cols=88 Identities=36% Similarity=0.781 Sum_probs=78.7
Q ss_pred CCccCccccCC------CCCCCCCCccCccCCCCCCCCCCcchHHhh---hcCccccHHHHHHHHhCCCCCCCC------
Q psy8407 2 KCAQCHTIEAG------GAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPKKYIPG------ 66 (92)
Q Consensus 2 ~C~~CH~~~~~------~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~------ 66 (92)
+|++||++.+. +.+.+||+|.++++|..++.++|.|+.+++ ..++.|++++|.+||++|+.++|+
T Consensus 12 ~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~g~~w~~~~L~~~l~~P~~~~pg~~~d~~ 91 (116)
T 1vyd_A 12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKK 91 (116)
T ss_dssp GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHTCTT
T ss_pred cchhhCCCCCCCCccccccCccCcccccccccccccccccccCHHHHhhcccCccCCHHHHHHHHHCHHHhCCCcccCcc
Confidence 69999999864 356899999999999999999999999994 678999999999999999999998
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407 67 --TKMIFAGIKKPQERGDLIAYLEQASK 92 (92)
Q Consensus 67 --~~Mp~~~~~~~~d~~~liayL~sl~~ 92 (92)
+.|||. +.+++| +||+||+++++
T Consensus 92 ~~t~Mpf~-l~~~~~--dliaYL~sl~~ 116 (116)
T 1vyd_A 92 AKTEMAFK-LAKGGE--DVAAYLASVVK 116 (116)
T ss_dssp CCCSCCCC-CSSCHH--HHHHHHHHTCC
T ss_pred ccCCCCCC-CCCHHH--HHHHHHHHhcC
Confidence 999976 665555 99999999975
No 4
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=99.95 E-value=5.7e-28 Score=144.47 Aligned_cols=91 Identities=62% Similarity=1.189 Sum_probs=83.3
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG 81 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~ 81 (92)
+|++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..+..|++++|.+||++|....|++.|||.++++++|++
T Consensus 18 ~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~Mp~~~l~s~~ei~ 97 (108)
T 1ycc_A 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPXKYIPGTKMAFGGLKKEKDRN 97 (108)
T ss_dssp HTTTTCCCSTTCCCCSSCCCTTCTTSBTTCSTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHHH
T ss_pred hCcccCCCCCCCCCCCCCChhhhccccccccccccccHHHHhcCcccCHHHHHHHHHChhhhcCCcccCCCCCCCHHHHH
Confidence 59999999976567899999999999988889999999998889999999999999999888889999988887899999
Q ss_pred HHHHHHhhccC
Q psy8407 82 DLIAYLEQASK 92 (92)
Q Consensus 82 ~liayL~sl~~ 92 (92)
+|++||+++++
T Consensus 98 ~l~aYl~sl~e 108 (108)
T 1ycc_A 98 DLITYLKKACE 108 (108)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 5
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=99.95 E-value=7e-28 Score=150.51 Aligned_cols=87 Identities=39% Similarity=0.766 Sum_probs=78.4
Q ss_pred CCccCccccCC-----CCCCCCCCccCccCCCCCCCCCCcchHHh-----hhcCccccHHHHHHHHhCCCCCCCC-----
Q psy8407 2 KCAQCHTIEAG-----GAHKVGPNLHGLIGRKTGQAPGFSYTEAN-----IKKGITWNKDTLFEYLENPKKYIPG----- 66 (92)
Q Consensus 2 ~C~~CH~~~~~-----~~~~~GP~L~~i~~r~~~~~~g~~y~~~~-----~~~~~~~~~~~l~~~i~~P~~~~p~----- 66 (92)
+|++||++++. +.+.+||+|.++++|..++.+||.|+.++ +..++.|++++|.+||++|+.++|+
T Consensus 15 ~CaaCH~~~~~~g~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~~~~w~~~~L~~~i~~P~~~~pg~~~~~ 94 (135)
T 155c_A 15 KCKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEANLIEYVTDPKPLVKKMTDDK 94 (135)
T ss_dssp TTTTTEECCCSSSCSSCCCSSEEECSSCTTSCTTCSSSSCCCHHHHHHHHHCSCCCCCSHHHHHHHHSSTTTTTTTSCCS
T ss_pred HHHHhcCCCCCCCccccCCCCCCCcccccCccccccccccchHHHhhhhhccccccCCHHHHHHHHhCHHhhCCCccccc
Confidence 49999999964 45789999999999999999999999999 7788999999999999999999999
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 67 ---TKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 67 ---~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
+.|||. +. ++|+ +||+||++++
T Consensus 95 ~~~t~Mpf~-L~-~~e~-dliAYL~sl~ 119 (135)
T 155c_A 95 GAKTKMTFK-MG-KNQA-DVVAFLAQDD 119 (135)
T ss_dssp CCCCSCCCC-CC-SCHH-HHHHHHHHHS
T ss_pred cccCCCCCC-CC-CHHH-HHHHHHHhcC
Confidence 999977 65 5666 9999999986
No 6
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=99.95 E-value=1.5e-28 Score=153.31 Aligned_cols=87 Identities=36% Similarity=0.743 Sum_probs=78.9
Q ss_pred CCccCccccCC------CCCCCCCCccCccCCCCCCCCCCcchHHh-----hhcCccccHHHHHHHHhCCCCCCCC----
Q psy8407 2 KCAQCHTIEAG------GAHKVGPNLHGLIGRKTGQAPGFSYTEAN-----IKKGITWNKDTLFEYLENPKKYIPG---- 66 (92)
Q Consensus 2 ~C~~CH~~~~~------~~~~~GP~L~~i~~r~~~~~~g~~y~~~~-----~~~~~~~~~~~l~~~i~~P~~~~p~---- 66 (92)
+|++||++.+. +.+.+||+|.++++|..++.+||.|+.++ +..++.|++++|.+||++|+.++|+
T Consensus 14 ~C~~CH~v~~~~g~~~~~~~~~GP~L~gv~gr~~~~~~gf~ys~~l~~~~~~~~g~~w~~~~L~~~l~~P~~~~pg~~~d 93 (134)
T 2bh4_X 14 KCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSEADLIEYVTDPKPWLVEKTGD 93 (134)
T ss_dssp GTTTTCCEECTTSCEEECCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHHCTTCBCCHHHHHHHHHCHHHHHHHHHCC
T ss_pred HhHhhcCCcCCCcccccccCCcCCCcccccCccccccccccccHHHhhhhccccCccCCHHHHHHHHhCHHhcCCCcccC
Confidence 49999999964 45789999999999999999999999998 7788999999999999999998888
Q ss_pred ----CCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 67 ----TKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 67 ----~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
+.|||. | +++|+ +||+||++++
T Consensus 94 ~~a~t~Mpf~-L-s~~e~-dliaYL~sl~ 119 (134)
T 2bh4_X 94 SAAKTKKTFK-L-GKNQA-DVVAFLAQHS 119 (134)
T ss_dssp TTCCCSCCCC-C-CSCHH-HHHHHHHHTC
T ss_pred ccccCCCCCC-C-ChHHH-HHHHHHHHcC
Confidence 999987 5 47888 9999999986
No 7
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=99.94 E-value=1.2e-27 Score=144.56 Aligned_cols=91 Identities=57% Similarity=1.043 Sum_probs=83.4
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG 81 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~ 81 (92)
+|++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..++.|++++|.+||++|....+++.|||.++++++|++
T Consensus 24 ~C~~CH~~~g~g~~~~gP~L~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~l~~~i~~p~~~~~g~~Mp~~~~ls~~ei~ 103 (114)
T 2w9k_A 24 RAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPXKFMPGTKMSFAGMKKPQERA 103 (114)
T ss_dssp HTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHCCCBCCHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHHH
T ss_pred hchhhCCCCCCCCCCCCCCcccccCccccccccccccHhHHhcCCccCHHHHHHHHHchhhhcCCCcccccccCCHHHHH
Confidence 59999999976556789999999999988889999999999889999999999999999888889999988888899999
Q ss_pred HHHHHHhhccC
Q psy8407 82 DLIAYLEQASK 92 (92)
Q Consensus 82 ~liayL~sl~~ 92 (92)
+|++||++++.
T Consensus 104 ~l~aYl~sl~~ 114 (114)
T 2w9k_A 104 DVIAYLETLKG 114 (114)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHHHccC
Confidence 99999999864
No 8
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=99.94 E-value=2.1e-27 Score=140.68 Aligned_cols=91 Identities=77% Similarity=1.278 Sum_probs=82.9
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG 81 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~ 81 (92)
+|++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..+..|++++|..||++|....|++.|||.++++++|++
T Consensus 13 ~C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~Mp~~~l~~~~ei~ 92 (103)
T 1i54_A 13 KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMIFAGIKKKGERQ 92 (103)
T ss_dssp HTTTTCCCSTTCCCCSSCCCTTCTTSBTTCCTTCCCCHHHHHSCCBCSHHHHHHHHHCHHHHSTTCSCCCCCCCCHHHHH
T ss_pred hhHHhCCCCCCCCCCCCCCcccccCccccccCCccccHHHHhCCceECHHHHHHHHhCccccCCCCcCCccCCCCHHHHH
Confidence 69999999976567899999999999888889999999999889999999999999999888888999988877799999
Q ss_pred HHHHHHhhccC
Q psy8407 82 DLIAYLEQASK 92 (92)
Q Consensus 82 ~liayL~sl~~ 92 (92)
+|++||+++++
T Consensus 93 ~l~aYl~sl~~ 103 (103)
T 1i54_A 93 DLVAYLKSATS 103 (103)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 9
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=99.94 E-value=2.4e-27 Score=142.62 Aligned_cols=91 Identities=57% Similarity=1.163 Sum_probs=83.3
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG 81 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~ 81 (92)
+|++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..+..|++++|.+||++|....|+++|||.++++++|++
T Consensus 22 ~C~~CHg~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~m~~~~~ls~~ei~ 101 (112)
T 1ccr_A 22 KCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPXKYIPGTKMVFPGLXKPQERA 101 (112)
T ss_dssp HTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHCCBCSHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHHH
T ss_pred hcHHhCCCCCCCCCCCCCCccccccccccccCCccccHHHHhcCCccCHHHHHHHHhCccccCCCCCCCCCCCCCHHHHH
Confidence 59999999976556899999999999988889999999999889999999999999999888889999998887899999
Q ss_pred HHHHHHhhccC
Q psy8407 82 DLIAYLEQASK 92 (92)
Q Consensus 82 ~liayL~sl~~ 92 (92)
+|++||++++.
T Consensus 102 ~l~aYl~~l~~ 112 (112)
T 1ccr_A 102 DLISYLKEATS 112 (112)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 99999999863
No 10
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=99.94 E-value=3e-27 Score=141.01 Aligned_cols=90 Identities=53% Similarity=1.026 Sum_probs=81.7
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER 80 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~ 80 (92)
++|++||++++. ++.+||+|.++.+|..+..++|.|+.+++..+..|++++|.+||++|....|++.|||.++++++|+
T Consensus 17 ~~C~~CH~~~g~-~~~~gP~L~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~Mp~~~~~~~~ei 95 (106)
T 1hro_A 17 TICITCHTDIKG-ANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKR 95 (106)
T ss_dssp TTGGGTCCSSTT-CBSSSCCCTTCTTCBTTCSTTBCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCCCCCCCCCCHHHH
T ss_pred cchhhhCCCCCC-CCCCCCCCCCccccccccCCCccccHHHHhcCcccCHHHHHHHHhCccccCCCCCCCCCCCCCHHHH
Confidence 369999999964 4678999999999988878899999999888999999999999999988888999998888789999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||++|+
T Consensus 96 ~~l~aYl~sl~ 106 (106)
T 1hro_A 96 ADIIAYLETLK 106 (106)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 11
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=99.94 E-value=2.7e-27 Score=141.56 Aligned_cols=90 Identities=51% Similarity=0.981 Sum_probs=82.6
Q ss_pred CccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHH
Q psy8407 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGD 82 (92)
Q Consensus 3 C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~ 82 (92)
|++||++++.+.+.+||+|.++.+|..+..++|.|+.+++..++.|++++|.+||++|....+++.|||.++++++|+++
T Consensus 13 C~~CH~~~g~g~~~~gP~L~~~~~r~~~~~~~~~y~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~Mp~~~l~s~~ei~~ 92 (107)
T 1co6_A 13 CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMIFAGVKDEQKVSD 92 (107)
T ss_dssp HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHHTSCCBCCHHHHHHHHHCHHHHSTTCSCCCCCCCCHHHHHH
T ss_pred hHhhCCCCCCCCCCCCCCcccccCccccccCcccchHHHHhcCceecHHHHHHHHHCccccCCCCCCCCCCCCCHHHHHH
Confidence 99999999765678999999999999888899999999998899999999999999998888999999888878999999
Q ss_pred HHHHHhhccC
Q psy8407 83 LIAYLEQASK 92 (92)
Q Consensus 83 liayL~sl~~ 92 (92)
|++||++++.
T Consensus 93 l~aYl~sl~~ 102 (107)
T 1co6_A 93 LIAYIKQFNA 102 (107)
T ss_dssp HHHHHHTBCT
T ss_pred HHHHHHHccc
Confidence 9999999863
No 12
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=99.94 E-value=2.7e-27 Score=142.64 Aligned_cols=89 Identities=39% Similarity=0.809 Sum_probs=78.8
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHh---hhcCccccHHHHHHHHhCCCCCCCC--------CCCC
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEAN---IKKGITWNKDTLFEYLENPKKYIPG--------TKMI 70 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~---~~~~~~~~~~~l~~~i~~P~~~~p~--------~~Mp 70 (92)
+|++||++++.+...+||+|.++.+|..+..++|.|+.++ +..++.|++++|.+||++|..++|+ +.||
T Consensus 13 ~Ca~CH~~~g~g~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~i~~p~~~~~g~~~~~~~~~~Mp 92 (112)
T 3c2c_A 13 KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVKNPKAFVLEKSGDPKAKSKMT 92 (112)
T ss_dssp GGTTTCCCSTTCCCSSSCCCTTCTTSBSSCCTTSCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHCCTTCCCSCC
T ss_pred hHHhhCCCCCCCCCCCCCCcccccCCcccccccccccHHHHhccccCcccCHHHHHHHHhChhhhcCCCcCCccccCCCC
Confidence 6999999997656688999999999999999999999988 4578899999999999999766555 7899
Q ss_pred CCCCCCHHHHHHHHHHHhhcc
Q psy8407 71 FAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 71 ~~~~~~~~d~~~liayL~sl~ 91 (92)
|. +++++||++|++||++|+
T Consensus 93 ~~-l~~~~di~~l~aYl~sl~ 112 (112)
T 3c2c_A 93 FK-LTKDDEIENVIAYLKTLK 112 (112)
T ss_dssp CC-CCCHHHHHHHHHHHTTCC
T ss_pred Cc-CCCHHHHHHHHHHHHHcC
Confidence 76 777899999999999985
No 13
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.94 E-value=1.2e-26 Score=137.22 Aligned_cols=87 Identities=45% Similarity=0.955 Sum_probs=79.0
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCC-CCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~-~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~ 80 (92)
+|++||+++ ++.+||+|.++.+|..+. .++|.|+.+++..++.|++++|.+||++|....|++.|||.++++++|+
T Consensus 13 ~C~~CH~~~---~~~~gP~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~g~~Mp~~~~~s~~di 89 (100)
T 1qn2_A 13 PCKACHNFE---KNGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADPKKKVPGTKMVFPGISDPKKV 89 (100)
T ss_dssp GGGGTCCSS---SCSSSCCCTTCTTSBTTTCTTTCCCCHHHHHHCCBCCHHHHHHHHHCHHHHSTTCSCCCCCCCCHHHH
T ss_pred HHHHhcCCC---CCCCCCCcccccCccccccCCCccccHHHHhcCcccCHHHHHHHHhCcccccCCCCCCCCCCCCHHHH
Confidence 599999998 347899999999998877 7899999999999999999999999999988888999998888889999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||++++
T Consensus 90 ~~l~aYl~sl~ 100 (100)
T 1qn2_A 90 DDIIAYLKTKS 100 (100)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 14
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=99.93 E-value=1e-26 Score=141.50 Aligned_cols=91 Identities=40% Similarity=0.843 Sum_probs=79.5
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhh---hcCccccHHHHHHHHhCCCCCCCC-----------
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPKKYIPG----------- 66 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~----------- 66 (92)
++|++||++++.+.+.+||+|.++.+|..+..++|.|+.++. ..++.|++++|..||++|..++|+
T Consensus 13 ~~C~~CH~~~~~~~~~~gP~L~gi~~r~~~~~~~~~y~~~~~~~~~~g~~~~~~~l~~~i~~p~~~~~g~~~~~~~~~~~ 92 (121)
T 1jdl_A 13 KKCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLPDPNAFLRKFLADAGHAEQA 92 (121)
T ss_dssp GGTTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHTTCHHHHHHHHHHHTTCGGGG
T ss_pred hhhhhhCCCCCCCCCCCCCCchhhcCCccccccCccccHHHHhhhhcCCccCHHHHHHHHhCcccccCCcccccchhhcc
Confidence 379999999975567899999999999998899999999884 568899999999999999876665
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407 67 ---TKMIFAGIKKPQERGDLIAYLEQASK 92 (92)
Q Consensus 67 ---~~Mp~~~~~~~~d~~~liayL~sl~~ 92 (92)
+.|||. +++++|+++|++||++++.
T Consensus 93 ~~~~~Mp~~-l~~~~ei~~l~aYL~sl~~ 120 (121)
T 1jdl_A 93 KGSTKMVFK-LPDEQERKDVVAYLKQFSP 120 (121)
T ss_dssp SSCCSCCCC-CCCHHHHHHHHHHHGGGCC
T ss_pred cccccCCcc-CCCHHHHHHHHHHHHHccc
Confidence 899977 7766999999999999863
No 15
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=99.93 E-value=6.1e-27 Score=146.13 Aligned_cols=88 Identities=34% Similarity=0.730 Sum_probs=78.1
Q ss_pred CCccCccccCC------CCCCCCCCccCccCCCCCCCCCCcchHHhh---hcCccccHHHHHHHHhCCCCCCCC------
Q psy8407 2 KCAQCHTIEAG------GAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPKKYIPG------ 66 (92)
Q Consensus 2 ~C~~CH~~~~~------~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~------ 66 (92)
+|++||++++. +.+.+||+|.++.+|..+..++|.|+.+++ +.++.|++++|.+||++|+.++|+
T Consensus 33 ~C~~CH~~~~~~G~~~~~~~~~gP~L~~i~~r~~g~~~~~~ys~~l~~~~~~g~~w~~~~l~~~i~~p~~~~~g~~~~~~ 112 (137)
T 1c2n_A 33 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEEDIATYVKDPGAFLKEKLDDKK 112 (137)
T ss_dssp HHTTTCCBCCTTSCCSBCCCCSSCCCTTCTTSCSSCCSSCCCCHHHHHHHHTTCCCCHHHHHHHTTSTTHHHHHHHTCSC
T ss_pred hHHhhCCCCCCCccccccccCCCcchhcccccccCCCCcccccHHHHhhhhcCccCCHHHHHHHHhCHHhhCCCcccccC
Confidence 59999999853 246789999999999999999999999884 688999999999999999988887
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHhhccC
Q psy8407 67 --TKMIFAGIKKPQERGDLIAYLEQASK 92 (92)
Q Consensus 67 --~~Mp~~~~~~~~d~~~liayL~sl~~ 92 (92)
+.|||. ++++|+ +|++||+++++
T Consensus 113 ~~~~Mp~~--Lsd~e~-~liaYL~sl~~ 137 (137)
T 1c2n_A 113 AKTGMAFK--LAKGGE-DVAAYLASVVK 137 (137)
T ss_dssp CCCSCCCC--CSSSHH-HHHHHHHHHCC
T ss_pred cCCCCCCC--CCcHHH-HHHHHHHHccC
Confidence 899986 558888 99999999975
No 16
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=99.92 E-value=2.4e-26 Score=139.25 Aligned_cols=86 Identities=38% Similarity=0.847 Sum_probs=76.3
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhh---hcCccccHHHHHHHHhCCCCCCCC------------
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLENPKKYIPG------------ 66 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~---~~~~~~~~~~l~~~i~~P~~~~p~------------ 66 (92)
+|++||+. +...+||+|.++.+|..++.++|.|+.++. ..++.|++++|.+||++|+.++|+
T Consensus 12 ~C~~CH~~---~~~~~GP~l~gi~~r~~~~~~~~~y~~~~~~~~~~g~~w~~~~L~~~l~~p~~~~~g~~~d~~~~~~~~ 88 (114)
T 1i8o_A 12 QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKFLTEKGKADQAV 88 (114)
T ss_dssp HHTTTCCS---SSCSSSCCCTTCTTSBTTCCTTCCCCHHHHHHHHTTCBCCHHHHHHHHHCHHHHHHHHHHHTTCGGGCC
T ss_pred hHHhhCCC---cccCcCcccccccccccccccchhhhHHHhhccccCccccHHHHHHHHHCHHhhCCCCccccccccccc
Confidence 69999993 246789999999999999999999999884 578899999999999999887777
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 67 --TKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 67 --~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
+.|||. +++++|+++|++||++|+
T Consensus 89 ~~~~Mp~~-l~~~~d~~~liaYL~sl~ 114 (114)
T 1i8o_A 89 GVTKMTFK-LANEQQRKDVVAYLATLK 114 (114)
T ss_dssp SCCSSCCC-CCCHHHHHHHHHHHHTTC
T ss_pred ccCcCCCC-CCCHHHHHHHHHHHHhcC
Confidence 899977 765699999999999985
No 17
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=99.77 E-value=8.7e-19 Score=102.35 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=62.0
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC---CCCC-CCCCCCH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG---TKMI-FAGIKKP 77 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~---~~Mp-~~~~~~~ 77 (92)
+|++||+.++ .+.+||+|.++.++.....++ .+..|++++|.++|++|....+. +.|| |...+++
T Consensus 17 ~C~~CHg~~g--~~~~gp~l~~~~~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~g~~~~Mp~~~~~ls~ 85 (99)
T 1w2l_A 17 ACFSCHSIDG--SRLVGPSFKGLYGSTRTFEDG---------TTAVADENYLRESILQPGAKVVQGYPNVMPASYASLSE 85 (99)
T ss_dssp SGGGTCCSSS--CCSSSCCSTTCTTCEEEBTTS---------CEEECCHHHHHHHHHSTTSSCBTTSCSCCCGGGGGCCH
T ss_pred ChhhcCCCCC--CCCCCCCcccccccccccCCC---------CcccCCHHHHHHHHHccCccccccccccCccccccCCH
Confidence 3999999985 357899999998876433222 23578999999999999875432 4798 6556679
Q ss_pred HHHHHHHHHHhhcc
Q psy8407 78 QERGDLIAYLEQAS 91 (92)
Q Consensus 78 ~d~~~liayL~sl~ 91 (92)
+|+++|++||++++
T Consensus 86 ~ei~~l~~yl~sl~ 99 (99)
T 1w2l_A 86 REVAALIEFIKQQQ 99 (99)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999985
No 18
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=99.74 E-value=2e-18 Score=106.92 Aligned_cols=71 Identities=30% Similarity=0.448 Sum_probs=57.8
Q ss_pred CCccCccccCCC----CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCC-C---
Q psy8407 2 KCAQCHTIEAGG----AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFA-G--- 73 (92)
Q Consensus 2 ~C~~CH~~~~~~----~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~-~--- 73 (92)
+|++||++++.+ ++.+||+|.++..| |++++|..||.+|....+++.||.. .
T Consensus 40 ~C~~CH~~~g~g~~~~~g~~gP~L~~~~~~--------------------~~~~~l~~~i~~p~~~~~~~~Mp~~~~~~~ 99 (137)
T 2c1d_B 40 NCVACHQIGALPDVEFPGTIAPPLDGAGDR--------------------WTEAQLRGIVANAKMTFEGTFMPAFYKVDG 99 (137)
T ss_dssp CGGGTBCCTTCTTCCSCCCSBCCSTTHHHH--------------------SCHHHHHHHHHHGGGTSTTCSSCCSSCCSC
T ss_pred ChhhhcCCCCCCCccccccCCCCHhHhhhc--------------------cCHHHHHHHHcCccccCCCcccCccccccc
Confidence 799999998643 24789999987543 4789999999999887788888832 1
Q ss_pred -------------------CCCHHHHHHHHHHHhhccC
Q psy8407 74 -------------------IKKPQERGDLIAYLEQASK 92 (92)
Q Consensus 74 -------------------~~~~~d~~~liayL~sl~~ 92 (92)
.++++|+++|++||+++++
T Consensus 100 ~~~~g~~~~~~~~Mp~~~~~Ls~~ei~~l~aYl~sl~~ 137 (137)
T 2c1d_B 100 FVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVTLKE 137 (137)
T ss_dssp CSSBBSTTSSSBCCSSCCCSSCHHHHHHHHHHHHTCCC
T ss_pred cccccccccccccChhhhcCCCHHHHHHHHHHHHHccC
Confidence 5679999999999999874
No 19
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=99.73 E-value=1.6e-18 Score=107.38 Aligned_cols=71 Identities=27% Similarity=0.484 Sum_probs=56.7
Q ss_pred CCccCccccCC----CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC----
Q psy8407 2 KCAQCHTIEAG----GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA---- 72 (92)
Q Consensus 2 ~C~~CH~~~~~----~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~---- 72 (92)
+|++||++++. .++.+||+|.++..+ |++++|.+||.+|....+++.|| |.
T Consensus 41 ~C~~CH~~~g~~~~~~~~~~gP~L~~~~~~--------------------~~~~~l~~~i~~~~~~~~~~~Mp~~~~~~~ 100 (138)
T 1h32_B 41 NCIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILVNSKNVFPETVMPAYYRVEG 100 (138)
T ss_dssp CGGGTCCCTTC---CCCCSSSCCCTTHHHH--------------------SCHHHHHHHHHCHHHHSTTCSSCCTTCCSC
T ss_pred ChhhccCCCCcCccccCCcCCCChhHhccc--------------------CCHHHHHHHHhCcccCCCCCccCccccccc
Confidence 79999999863 145789999997543 57999999999998777777787 31
Q ss_pred ------------------CCCCHHHHHHHHHHHhhccC
Q psy8407 73 ------------------GIKKPQERGDLIAYLEQASK 92 (92)
Q Consensus 73 ------------------~~~~~~d~~~liayL~sl~~ 92 (92)
..++++|+++|++||+++++
T Consensus 101 ~~~~~~~~~g~~~M~~~~~~Ls~~ei~~l~aYl~sl~~ 138 (138)
T 1h32_B 101 FNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMTLTQ 138 (138)
T ss_dssp CSSBBSTTSCCBCCSCCCCSSCHHHHHHHHHHHTTCC-
T ss_pred cccccccccCcccCcccccCCCHHHHHHHHHHHHhcCC
Confidence 14679999999999999874
No 20
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=99.73 E-value=4.6e-18 Score=96.37 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=55.9
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-CCCCCCCCCCHHH
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-TKMIFAGIKKPQE 79 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-~~Mp~~~~~~~~d 79 (92)
++|++||+.++. .+||+|.++.++.. +..|++++|.++|+++....++ ..||.. .++++|
T Consensus 8 ~~C~~CHg~~g~---g~gP~l~~~~~~~~---------------~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~Lsd~e 68 (80)
T 1ayg_A 8 KGCMACHDLKAK---KVGPAYADVAKKYA---------------GRKDAVDYLAGKIKKGGSGVWGSVPMPPQ-NVTDAE 68 (80)
T ss_dssp SSSGGGCCSSCC---SSSCCHHHHHHHCS---------------SCTTHHHHHHHHHHSCBCSSSCSCCBCCC-CCCHHH
T ss_pred CCchhhcCCCCC---CCCCChHHHHHHhc---------------CCccHHHHHHHHHHcCCCCCCCCCCCCCC-CCCHHH
Confidence 369999999853 37999998876643 1236789999999999765444 349855 456999
Q ss_pred HHHHHHHHhhcc
Q psy8407 80 RGDLIAYLEQAS 91 (92)
Q Consensus 80 ~~~liayL~sl~ 91 (92)
+++|++||++++
T Consensus 69 i~~l~~yl~~lk 80 (80)
T 1ayg_A 69 AKQLAQWILSIK 80 (80)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcC
Confidence 999999999985
No 21
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=99.69 E-value=5.5e-18 Score=100.57 Aligned_cols=69 Identities=28% Similarity=0.591 Sum_probs=54.6
Q ss_pred CCccCccccCC--CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC--------------
Q psy8407 2 KCAQCHTIEAG--GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP-------------- 65 (92)
Q Consensus 2 ~C~~CH~~~~~--~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p-------------- 65 (92)
+|++||+.++. +.+.+||+|.++..|. +.++|.+||.+|..+.+
T Consensus 13 ~C~~CH~~~g~~~g~~~~gP~L~~~~~~~--------------------~~~~l~~~i~~p~~~~~g~~~~~~~~~~g~~ 72 (110)
T 2l4d_A 13 RCSSCHTVGNTEPGQPGIGPDLLGVTRQR--------------------DANWLVRWLKVPDQMLAEKDPLAMLLFEQYN 72 (110)
T ss_dssp HTTTTCCSSCSBTTBCTTSCCCTTGGGTS--------------------CTTHHHHHTTSHHHHHHTTCHHHHHHHHHHT
T ss_pred hhHHhcCCCCCCCCCCCCCCChhhhhccc--------------------CHHHHHHHHhChhhhccCcchHHHHHHhccC
Confidence 69999999975 4467899999987654 46678888888765443
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 66 GTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 66 ~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
.+.||..++ +++|+++|++||++++
T Consensus 73 ~~~Mp~~~L-s~~ei~~l~~yl~~~~ 97 (110)
T 2l4d_A 73 RLAMPNMRL-GDAEVSALISYLEEET 97 (110)
T ss_dssp SCCCCCCCC-CHHHHHHHHHHHHHHH
T ss_pred cCcCCCCCC-CHHHHHHHHHHHHHcc
Confidence 357986665 5999999999999874
No 22
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=99.69 E-value=1.6e-17 Score=93.79 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=53.9
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-CCCCCCCCCCCCCCHHH
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-YIPGTKMIFAGIKKPQE 79 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-~~p~~~Mp~~~~~~~~d 79 (92)
++|++||+.++. .+||+|.++.++... .++++|.++|+++.. ..+.+.||....++++|
T Consensus 8 ~~C~~CHg~~g~---~~gP~l~~~~~~~~~-----------------~~~~~l~~~i~~g~~~~~~~~~Mp~~~~Ls~~e 67 (79)
T 2d0s_A 8 KGCMACHAIDKK---LVGPSYKDVAKKYTE-----------------ADVPKLVEKVKKGGAGVWGPVPMPPHPQVAEAD 67 (79)
T ss_dssp TTGGGTCCSSSC---SSSCCHHHHHHHCCG-----------------GGHHHHHHHHHHCBCSSSCSSCBCCCTTSCHHH
T ss_pred CCChhhcCCCCC---CCCCCHHHHHHHHcc-----------------ccHHHHHHHHhcCCCCCCCCCCCCCCCCCCHHH
Confidence 479999999863 379999988665421 156799999999864 33456788444566999
Q ss_pred HHHHHHHHhhcc
Q psy8407 80 RGDLIAYLEQAS 91 (92)
Q Consensus 80 ~~~liayL~sl~ 91 (92)
+++|++||.+++
T Consensus 68 i~~l~~yl~~lk 79 (79)
T 2d0s_A 68 IEKIVRWVLTLK 79 (79)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhCc
Confidence 999999999985
No 23
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=99.68 E-value=6.6e-17 Score=100.70 Aligned_cols=73 Identities=25% Similarity=0.433 Sum_probs=58.7
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCC-CCCCCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT-KMIFAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~-~Mp~~~~~~~~d~ 80 (92)
+|.+||++++.+ +.+||+|.++.++... ...++++|..||++|....+++ .||...+ +++|+
T Consensus 60 ~C~~CH~~~g~g-~~~gP~L~~~~~~~~~---------------~~~~~~~l~~~i~~~~~~~~g~~~Mp~~~L-s~~ei 122 (146)
T 3o0r_C 60 NCVGCHTLLGEG-AYFAPELGNVVGRRGG---------------EEGFNTFLQAWMKIQPLNVPGRRAMPQFHL-SEGQV 122 (146)
T ss_dssp TGGGTSEETTEE-CSSSCBCSSGGGGTTH---------------HHHHHHHHHHHHHHCCCCCTTSCCCCCCCC-CHHHH
T ss_pred CCcccCCCcCCC-CCCCCCchhhhhhccc---------------ccchHHHHHHHHhCcccCCCCCCCCCCCCc-CHHHH
Confidence 699999998643 4789999999876531 1124689999999998888885 7996665 69999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||+++.
T Consensus 123 ~~l~ayl~~l~ 133 (146)
T 3o0r_C 123 DDLAEFLKWSS 133 (146)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 24
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.67 E-value=1.9e-17 Score=108.53 Aligned_cols=70 Identities=30% Similarity=0.551 Sum_probs=56.7
Q ss_pred CCccCcc--ccCC------------------------CCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHH
Q psy8407 2 KCAQCHT--IEAG------------------------GAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFE 55 (92)
Q Consensus 2 ~C~~CH~--~~~~------------------------~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~ 55 (92)
+|.+||+ +++. |.+.+||||+++++|. +.+++.+
T Consensus 64 GC~~CHsQ~VR~~~~e~~r~G~~S~a~e~~yd~p~l~Gsgr~GPDLt~vG~R~--------------------s~~wl~~ 123 (203)
T 3mk7_B 64 GCVGCHSQMIRPFRAETERYGHYSVAGESVYDHPFLWGSKRTGPDLARVGGRY--------------------SDDWHRA 123 (203)
T ss_dssp TGGGTCCCCCCSSHHHHHHHSSCCCGGGGTTCSSCCCCSBCSSCCCTTCTTTS--------------------CHHHHHH
T ss_pred ChhhccCCCCCCCchhhhcccccccchhhhhccccccCCCCCCcChhhhhccC--------------------CHHHHHH
Confidence 6999999 6652 2478999999998875 5789999
Q ss_pred HHhCCCCCCCCCCCC-CCC------------------------------------CCCHHHHHHHHHHHhhcc
Q psy8407 56 YLENPKKYIPGTKMI-FAG------------------------------------IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 56 ~i~~P~~~~p~~~Mp-~~~------------------------------------~~~~~d~~~liayL~sl~ 91 (92)
||+||+.+.|++.|| |.. +...+|+++|||||++|.
T Consensus 124 ~I~dPq~v~PGS~MPay~~L~~~~~~~~~~~~~~~~l~~~gvpy~~~~i~~a~~~~~~~~e~~alvAYLq~Lg 196 (203)
T 3mk7_B 124 HLYNPRNVVPESKMPSYPWLVENTLDGKDTAKKMSALRMLGVPYTEEDIAGARDSVNGKTEMDAMVAYLQVLG 196 (203)
T ss_dssp HHHCHHHHSTTCCCCCCTHHHHCBCCCTTHHHHHHHHHHTTCCCCHHHHTTSHHHHTTCBHHHHHHHHHTTTT
T ss_pred HHhCccccCCCCCCCCCccccccccchHHHHHHHHHHHhcCCCCCHHHHHhHHHHhcchhHHHHHHHHHHHhC
Confidence 999999999999999 430 122358899999999985
No 25
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=99.67 E-value=3.6e-17 Score=92.67 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=54.6
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC-CCCCCCCCCCCHHH
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP-GTKMIFAGIKKPQE 79 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p-~~~Mp~~~~~~~~d 79 (92)
++|++||+.++. .+||+|.++.++.. +..+++++|.++|++|..... .+.||.. .++++|
T Consensus 10 ~~C~~CHg~~g~---g~gp~l~~~~~~~~---------------~~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ls~~e 70 (82)
T 2exv_A 10 KGCVACHAIDTK---MVGPAYKDVAAKFA---------------GQAGAEAELAQRIKNGSQGVWGPIPMPPN-AVSDDE 70 (82)
T ss_dssp TTGGGTCCSSSC---CSSCCHHHHHHHHT---------------TCTTHHHHHHHHHHHCBSSSSSSSCBCCC-CCCHHH
T ss_pred CCchhhcCCCCC---CCCcCHHHHHHHhc---------------CCcchHHHHHHHHHcCCCCCCCCCCCCCC-CCCHHH
Confidence 369999999863 37999998876542 123468999999999865433 3569855 456999
Q ss_pred HHHHHHHHhhcc
Q psy8407 80 RGDLIAYLEQAS 91 (92)
Q Consensus 80 ~~~liayL~sl~ 91 (92)
+++|++||.+++
T Consensus 71 i~~l~~yl~~lk 82 (82)
T 2exv_A 71 AQTLAKWVLSQK 82 (82)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC
Confidence 999999999985
No 26
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=99.66 E-value=6.9e-17 Score=91.37 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=54.7
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-CCCCCCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-TKMIFAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-~~Mp~~~~~~~~d~ 80 (92)
+|++||+.++. .+||+|.++.++..+ ...+.++|..+|+++.....+ ..||.. .++++|+
T Consensus 11 ~C~~CHg~~g~---g~gP~l~~~~~~~~~---------------~~~~~~~l~~~i~~g~~~~~~~~~Mp~~-~ls~~ei 71 (82)
T 1cch_A 11 PCAACHSVDTK---MVGPALKEVAAKNAG---------------VEGAADTLALHIKNGSQGVWGPIPMPPN-PVTEEEA 71 (82)
T ss_dssp THHHHSCSSSC---SSSCCHHHHHHHSSS---------------CGGGHHHHHHHHHTCCCSSSSSCCCCCC-SCCHHHH
T ss_pred CChhhcCCCCC---CCCcChHHHHHHcCC---------------CchHHHHHHHHhhcCCCCCCCCCCCCCC-CCCHHHH
Confidence 69999999853 379999998766532 112478999999998754433 569855 5679999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||.+++
T Consensus 72 ~~l~~yl~~l~ 82 (82)
T 1cch_A 72 KILAEWVLSLK 82 (82)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhcC
Confidence 99999999985
No 27
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*
Probab=99.65 E-value=2.5e-16 Score=104.22 Aligned_cols=72 Identities=21% Similarity=0.435 Sum_probs=56.7
Q ss_pred CCccCccccCCC--CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHH---HHHhCCCCCCCCCCCC-CC--C
Q psy8407 2 KCAQCHTIEAGG--AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLF---EYLENPKKYIPGTKMI-FA--G 73 (92)
Q Consensus 2 ~C~~CH~~~~~~--~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~---~~i~~P~~~~p~~~Mp-~~--~ 73 (92)
+|++||.+++.+ .+.+||+|.++.... .|+++.|. .+|.+|....+++.|| |. +
T Consensus 124 ~CaaCHg~dG~G~~~G~~GP~Lag~~~~r------------------~~~~~~L~~~~~~I~~~~~~~p~~~MP~fa~~g 185 (208)
T 3oa8_B 124 NCYACHQLDPKEVSYGTLGPSLVGYGRER------------------NFSAEDAKIAFAKVYDAQASLACSSMPRFGVNG 185 (208)
T ss_dssp CGGGTCCCSTTCCCCCSSSCCCTTHHHHT------------------TTCHHHHHHHHHHHHCGGGTSTTCSSCCTTTTT
T ss_pred cchhhCCCCCcCCCCCCcCCCcccccccc------------------cCCHHHHHHHHHHhhCccCCCCCCCCCcccccC
Confidence 799999999764 257899999975411 14666665 7899998888889998 54 4
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
.++++||++|++||.++.
T Consensus 186 ~LSdeEIaaLaaYL~s~~ 203 (208)
T 3oa8_B 186 VLTEQQIKDVVAYLFDPE 203 (208)
T ss_dssp SSCHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHccC
Confidence 677999999999999864
No 28
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=99.63 E-value=3.3e-17 Score=101.69 Aligned_cols=75 Identities=28% Similarity=0.341 Sum_probs=54.2
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCC-------------CC
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPG-------------TK 68 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~-------------~~ 68 (92)
+|++||+ . +.+.+||+|. + + .++|.|+.. ..|+++.|.+||++|..+.++ ..
T Consensus 36 ~Ca~CH~-~--g~~~~gP~L~-l-g-----~~~~~~s~~-----~~~~~~~L~~~l~~p~~~~~~~~~~~~~p~~~~~~~ 100 (135)
T 1e29_A 36 TCTQCHL-Q--GKTKTNNNVS-L-G-----LADLAGAEP-----RRDNVLALVEFLKNPKSYDGEDDYSELHPNISRPDI 100 (135)
T ss_dssp HTHHHHG-G--GCBSSSSSCS-S-S-----HHHHHTSSS-----CCSSHHHHHHHHHSCBCTTSCSBCTTTSCCTTCTTT
T ss_pred HHHHhcC-C--CCCCCCCCce-e-c-----ccccccccc-----ccCCHHHHHHHHhChhhccCccccccccccccchhc
Confidence 6999999 3 3568999998 5 4 133434322 349999999999999775432 24
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
||....++++|+++|++||.+++
T Consensus 101 mp~~~~Lsd~ei~~laaYl~~~~ 123 (135)
T 1e29_A 101 YPEMRNYTEDDIFDVAGYTLIAP 123 (135)
T ss_dssp CGGGTTCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHhcc
Confidence 66434456999999999999874
No 29
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=99.61 E-value=7.1e-17 Score=91.50 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCC-CCCCCCCCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYI-PGTKMIFAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~-p~~~Mp~~~~~~~~d~ 80 (92)
+|++||+.++. .+||+|.++..+..+ ...++++|.++|+++.... +.+.||....++++|+
T Consensus 9 ~C~~CHg~~g~---~~gp~l~~~~~~~~~---------------~~~~~~~l~~~i~~g~~~~~~~~~Mp~~~~Ls~~ei 70 (81)
T 1a56_A 9 NCIACHQVETK---VVGPALKDIAAKYAD---------------KDDAATYLAGKIKGGSSGVWGQIPMPPNVNVSDADA 70 (81)
T ss_dssp SHHHHBCSSCB---SSSCCHHHHHHHHTT---------------SSSHHHHHHHHHHHCBSSSSSSCCBCSCCSSSSHHH
T ss_pred CchhhCCCCCC---cCCcCHHHHHHHhcC---------------CccHHHHHHHHHHcCCCCCCCCCCCCCCCCCCHHHH
Confidence 79999999853 478999987655321 1124789999999986543 2367884455669999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||.+++
T Consensus 71 ~~l~~yl~~lk 81 (81)
T 1a56_A 71 KALADWILTLK 81 (81)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 99999999985
No 30
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=99.59 E-value=7.3e-16 Score=85.46 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=49.5
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERG 81 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~ 81 (92)
+|++||+.++. +..||+|.++.. .|+.++|..+|+++. ..||. ..++++|++
T Consensus 10 ~C~~CHg~~g~--g~~gP~L~~~~~--------------------~~~~~~l~~~i~~g~-----~~Mp~-~~ls~~ei~ 61 (71)
T 1c75_A 10 KCISCHGGDLT--GASAPAIDKAGA--------------------NYSEEEILDIILNGQ-----GGMPG-GIAKGAEAE 61 (71)
T ss_dssp HTHHHHCTTSS--CSSSCCCTTGGG--------------------TSCHHHHHHHHHHCB-----TTBCS-CSSCHHHHH
T ss_pred HHHHHcCCCCC--CCCCCCCccccc--------------------cCCHHHHHHHHHhCC-----CCCCC-CCCCHHHHH
Confidence 69999999864 356899997642 247899999999875 24877 556699999
Q ss_pred HHHHHHhhcc
Q psy8407 82 DLIAYLEQAS 91 (92)
Q Consensus 82 ~liayL~sl~ 91 (92)
+|++||.+++
T Consensus 62 ~l~~yl~~~~ 71 (71)
T 1c75_A 62 AVAAWLAEKK 71 (71)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 31
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=99.59 E-value=2.9e-16 Score=95.15 Aligned_cols=66 Identities=24% Similarity=0.533 Sum_probs=52.4
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC------------CCCC
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP------------GTKM 69 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p------------~~~M 69 (92)
+|++||+.++ ..+||+|.++.++. +.++|..+|++|....+ ++.|
T Consensus 44 ~C~~CH~~~g---~~~gP~l~~~~~~~--------------------~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~M 100 (124)
T 3cp5_A 44 YCTACHRLDE---RFIGPALRDVTKRR--------------------GPVYIMNVMLNPNGMIQRHPVMKQLVQEYGTMM 100 (124)
T ss_dssp HTTTTCCSSS---CSSSCCCTTHHHHS--------------------CHHHHHHHHHCHHHHHHHCHHHHHHHHHHCSCC
T ss_pred hhHHhCCCCC---CCCCCCcccccccc--------------------CHHHHHHHHhChHhhcccchhHHHHHhcCCCCC
Confidence 6999999974 46799999986553 57899999999874322 3679
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc
Q psy8407 70 IFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 70 p~~~~~~~~d~~~liayL~sl~ 91 (92)
|...+ +++|+++|++||.+++
T Consensus 101 p~~~L-s~~ei~~l~~Yl~~l~ 121 (124)
T 3cp5_A 101 TDMAL-SEEQARAILEYLRQVA 121 (124)
T ss_dssp CCCCC-CHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHhC
Confidence 97655 5999999999999985
No 32
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=99.56 E-value=2.2e-15 Score=91.70 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=53.5
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-------------CCCCCC
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-------------YIPGTK 68 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-------------~~p~~~ 68 (92)
+|++||+.++ ..+||+|.... +......+..|+.++|..||++|.. ..+++.
T Consensus 34 ~Ca~CHg~~g---~~~gP~l~~~~------------~~l~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (129)
T 1f1c_A 34 ACAQCHALGV---TRTNPDVNLSP------------EALALATPPRDNIAALVDYIKNPTTYDGFVEISELHPSLKSSDI 98 (129)
T ss_dssp HTHHHHGGGC---CTTCSSSCSSH------------HHHHTSSSCCCSHHHHHHHHHSCBCTTSCSBCTTTSCSTTCTTT
T ss_pred hhHHhcCCCC---CCCCCCcccCH------------HHHHhcCCccchHHHHHHHHhCCcccccchhHhhhhhcccCCCC
Confidence 6999999863 35799987421 1111112346899999999999864 244568
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
||....++++|+++|++||.+++
T Consensus 99 Mp~~~~Ls~~ei~~l~~Yl~~l~ 121 (129)
T 1f1c_A 99 FPKMRNISEDDLYNVAGYILLQP 121 (129)
T ss_dssp CGGGSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC
Confidence 98435567999999999999875
No 33
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=99.30 E-value=4.9e-16 Score=109.00 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=62.2
Q ss_pred CCccCccccCCC-CCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGG-AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~-~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~ 80 (92)
+|++||+.++.+ .+..||+|.++.+|.... .| ...|++++|.++|++|+...+++.||..+.++++|+
T Consensus 246 ~Ca~CHg~~g~G~~~~~gP~L~gi~~r~~~~-~G----------~~~~~~~~L~~~I~~g~~~~~~~~MP~~~~LsdeEi 314 (337)
T 2yev_B 246 NCAACHGVARSMPPAVIGPELGLWGNRTSLG-AG----------IVENTPENLKAWIRDPAGMKPGVKMPGFPQLSEEDL 314 (337)
Confidence 699999999753 246899999987765311 11 135789999999999988888889983365679999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||++++
T Consensus 315 ~aL~aYL~sL~ 325 (337)
T 2yev_B 315 DALVRYLEGLK 325 (337)
Confidence 99999999986
No 34
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=99.52 E-value=3e-15 Score=85.06 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=50.8
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC----CCCCC-C---CC
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP----GTKMI-F---AG 73 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p----~~~Mp-~---~~ 73 (92)
+|++||+.++. .+||+|..+.++.. .++++|..||..+..... .+.|| | ..
T Consensus 11 ~C~~CHg~~g~---g~gp~l~~l~~~~~------------------~~~~~l~~~~~~~~~~~~~~~~~~~Mp~~~~~~~ 69 (87)
T 2zxy_A 11 GCGSCHQANVD---TVGPSLKKIAQAYA------------------GKEDQLIKFLKGEAPAIVDPAKEAIMKPQLTMLK 69 (87)
T ss_dssp TGGGTCCSSSC---SSSCCHHHHHHHTT------------------TCHHHHHHHHTTCSCCSSCGGGHHHHGGGGGGGG
T ss_pred CchhhcCCCCC---CCCCChHHHHHHhc------------------CCHHHHHHHHhcccccccCCCCCCCCCCcccccc
Confidence 69999999853 46999988876642 136789999988764332 24687 4 34
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
.++++|+++|++||.+++
T Consensus 70 ~ls~~ei~~l~~yl~sl~ 87 (87)
T 2zxy_A 70 GLSDAELKALADFILSHK 87 (87)
T ss_dssp GCCHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 456999999999999985
No 35
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=99.51 E-value=1.6e-15 Score=86.94 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=47.9
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||..++.+....+|+|.+... .|..+.|..|+..+....+++.|| |...++++||
T Consensus 13 ~C~~CHg~~g~g~~~~~P~L~~~~~--------------------~~~~~~l~~~~~g~~~~~~~~~Mp~~~~~ls~~ei 72 (87)
T 1cno_A 13 VCAACHGQNGISQVPIYPNLAGQKE--------------------QYLVAALKAYKAGQRQGGQAPVMQGQATALSDADI 72 (87)
T ss_dssp GTHHHHCTTSCCSSTTSCCCTTCCH--------------------HHHHHHHHHHHTTCBCSTTHHHHHHHHTTCCHHHH
T ss_pred HHHhhcCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHHcCCcCCCcccccHHHHhhCCHHHH
Confidence 6999999987654457899986411 123445555554443222234787 5455679999
Q ss_pred HHHHHHHhhccC
Q psy8407 81 GDLIAYLEQASK 92 (92)
Q Consensus 81 ~~liayL~sl~~ 92 (92)
++|++||+++++
T Consensus 73 ~~l~~yl~~l~~ 84 (87)
T 1cno_A 73 ANLAAYYASNPA 84 (87)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHHhCCc
Confidence 999999999864
No 36
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=99.49 E-value=1.7e-14 Score=81.39 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=43.4
Q ss_pred CCccCccccCCCCC-CCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHh----CCCCCCCCCCCC-CCCCC
Q psy8407 2 KCAQCHTIEAGGAH-KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE----NPKKYIPGTKMI-FAGIK 75 (92)
Q Consensus 2 ~C~~CH~~~~~~~~-~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~----~P~~~~p~~~Mp-~~~~~ 75 (92)
.|++||..++.+.. ..+|+|.+. +++++.+.|. ......+++.|| |...+
T Consensus 9 ~Ca~CHg~~g~g~~~~~~P~L~g~------------------------~~~~~~~~l~~~~~g~~~~~~~~~Mp~~~~~L 64 (79)
T 1c53_A 9 SCVGCHGADGSKQAMGVGHAVKGQ------------------------KADELFKKLKGYADGSYGGEKKAVMTNLVKRY 64 (79)
T ss_pred HHHhccCCCCCCCCCCCCCcCCCC------------------------CHHHHHHHHHHHHcCCCCCCcccchHHHHhhC
Confidence 39999999975433 568988763 2333444443 322223346798 54556
Q ss_pred CHHHHHHHHHHHhhc
Q psy8407 76 KPQERGDLIAYLEQA 90 (92)
Q Consensus 76 ~~~d~~~liayL~sl 90 (92)
+++|+++|++||++|
T Consensus 65 s~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 65 SDEEMKAMADYMSKL 79 (79)
T ss_pred CHHHHHHHHHHHHhC
Confidence 799999999999985
No 37
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=99.44 E-value=1.7e-14 Score=84.82 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=44.3
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCC---CCC-CCCCCCH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT---KMI-FAGIKKP 77 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~---~Mp-~~~~~~~ 77 (92)
+|++||+.++.+....+|+|.+.. ..|..+.|..|...+. +++ .|| |...+++
T Consensus 33 ~C~~CHg~~g~g~~~~~p~L~g~~--------------------~~~~~~~l~~~~~g~~---~~~~~~~Mp~~~~~ls~ 89 (103)
T 2zzs_A 33 VCAACHGADGNATIPGYPNLKGQN--------------------EQYIVSSIKAYKNKER---SGGLAAVMQAQASLLSD 89 (103)
T ss_dssp TTHHHHCTTSCCCSTTCCCCTTCC--------------------HHHHHHHHHHHHTTCB---CSTTHHHHHHHHTTCCH
T ss_pred HHHhhcCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCC---CCCcccchHHHHhhCCH
Confidence 699999999765556789998631 0112334444433332 333 788 5455679
Q ss_pred HHHHHHHHHHhhcc
Q psy8407 78 QERGDLIAYLEQAS 91 (92)
Q Consensus 78 ~d~~~liayL~sl~ 91 (92)
+|+++|++||++++
T Consensus 90 ~ei~~l~~yl~~l~ 103 (103)
T 2zzs_A 90 DDIANLAAYYSSLK 103 (103)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999975
No 38
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=99.43 E-value=1.8e-13 Score=87.64 Aligned_cols=68 Identities=22% Similarity=0.235 Sum_probs=51.7
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||+.++. +..||+|.+..... +..|+.++|..+|+++.. ..|| |...++++||
T Consensus 58 ~Ca~CHg~~g~--G~~gP~L~~~~~~~----------------~~~~~~~~l~~~i~~G~~----~~Mp~~~~~Ls~~ei 115 (170)
T 2d0w_A 58 SCSGCHGHIGE--GKVGPGLNDSYWTY----------------PKNTTDKGLFETIFGGAN----GMMGPHGQDLELDNM 115 (170)
T ss_dssp HTHHHHCTTSC--CSSSCCSSSSCCSS----------------GGGGSHHHHHHHHHHCCS----TTCCCCTTTSCHHHH
T ss_pred hhHHhCCCCCC--CCCCCCCccchhhc----------------cccCCHHHHHHHHHcCCC----CCCCCCCCCCCHHHH
Confidence 69999999864 35689998753221 124688999999998752 3687 5556779999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
.+|++||+++.
T Consensus 116 ~~l~aYl~sl~ 126 (170)
T 2d0w_A 116 LKLIAWIRHIQ 126 (170)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHcc
Confidence 99999999985
No 39
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=99.43 E-value=1.8e-13 Score=77.42 Aligned_cols=60 Identities=23% Similarity=0.406 Sum_probs=46.5
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC-CCCCHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA-GIKKPQE 79 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~-~~~~~~d 79 (92)
+|++||+.++ ..||+|.+. .|++++|..+|+++.. .|| |. ..++++|
T Consensus 14 ~C~~CHg~~g----g~~P~L~~~----------------------~~~~~~l~~~i~~g~~-----~Mp~~~~~~ls~~e 62 (80)
T 1wve_C 14 VCGHCHKPEV----GVGPVLEGR----------------------GLPEAYIKDIVRNGFR-----AMPAFPASYVDDES 62 (80)
T ss_dssp TTHHHHSTTT----CSSCCCTTS----------------------CCCHHHHHHHHHHCBT-----TBCCCCTTTSCHHH
T ss_pred HHHHhCCCCC----CCCCCCCCC----------------------CCCHHHHHHHHHhCcC-----CCCCCcccCCCHHH
Confidence 7999999862 379999761 1478999999998752 476 42 4567999
Q ss_pred HHHHHHHHhhccC
Q psy8407 80 RGDLIAYLEQASK 92 (92)
Q Consensus 80 ~~~liayL~sl~~ 92 (92)
+++|++||.++++
T Consensus 63 i~~l~~yl~~~~~ 75 (80)
T 1wve_C 63 LTQVAEYLSSLPA 75 (80)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHCcC
Confidence 9999999999864
No 40
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=99.42 E-value=3e-13 Score=86.86 Aligned_cols=68 Identities=24% Similarity=0.261 Sum_probs=51.1
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||..++. +..||+|.+.... | +..|+.+.|..+|+++. + ..|| |.+.++++||
T Consensus 64 ~Ca~CHg~~g~--G~~gP~L~~~~~~---------~-------~~~~~~~~l~~~i~~G~---~-g~MP~~~~~Lsd~ei 121 (172)
T 2c8s_A 64 SCSGCHGHLAE--GKLGPGLNDNYWT---------Y-------PSNTTDVGLFATIFGGA---N-GMMGPHNENLTPDEM 121 (172)
T ss_dssp HTHHHHCTTSS--CSSSCCSSSSCCS---------S-------GGGGSHHHHHHHHHTCT---T-SSSCSCCCCSCHHHH
T ss_pred hhHHhCCCCCC--CCCCCCCcccccc---------c-------cccCCHHHHHHHHHhCC---C-CCCCCCCCCCCHHHH
Confidence 69999999864 3568999873211 1 12468899999999874 2 3687 5556779999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
.+|++||+++.
T Consensus 122 ~~laaYl~sl~ 132 (172)
T 2c8s_A 122 LQTIAWIRHLY 132 (172)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999999985
No 41
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=99.41 E-value=3.4e-13 Score=84.21 Aligned_cols=68 Identities=25% Similarity=0.288 Sum_probs=50.5
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||+.++. +..||+|.+.... | +..|+.+.|..+|+++. ++ .|| |.+.++++|+
T Consensus 56 ~Ca~CHg~~g~--g~~gP~L~~~~~~---------~-------~~~~~~~~l~~~i~~G~---~~-~Mp~~~~~ls~~ei 113 (147)
T 2gc4_D 56 MCSGCHGHYAE--GKIGPGLNDAYWT---------Y-------PGNETDVGLFSTLYGGA---TG-QMGPMWGSLTLDEM 113 (147)
T ss_dssp HTHHHHCTTSS--CSSSCCCSSSCCS---------S-------GGGGSHHHHHHHHHHCC---ST-TCCCCTTTSCHHHH
T ss_pred hcHHhCCCCCC--CCCCCCCCccccc---------c-------cCcCCHHHHHHHHHcCC---CC-CCCCCCCCCCHHHH
Confidence 69999999864 3568999863211 1 12357899999999874 23 687 5556779999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||+++.
T Consensus 114 ~~l~~Yl~~l~ 124 (147)
T 2gc4_D 114 LRTMAWVRHLY 124 (147)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 99999999985
No 42
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=99.39 E-value=6.9e-14 Score=79.27 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=48.4
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||+.++. +...+|+|.+..-+. -..++.+.|..+|+++. ..|| |.+.++++|+
T Consensus 14 ~C~~CHg~~~~-~~~~~p~l~~~~~~~----------------~~~~~~~~~~~~i~~g~-----~~Mp~~~~~ls~~ei 71 (86)
T 3ph2_B 14 NCAACHAGGIN-LVNAEKTLKKEALEK----------------FGMNSIVAITTVVTNGK-----AGMPAFKGRLTDDQI 71 (86)
T ss_dssp HTHHHHCSSSC-TTCSSSSCCHHHHHH----------------TTCCSHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred HhHHhCCCCCC-CCCCCCccChhhHHh----------------ccCCCHHHHHHHHHhCC-----CCCCCcccCCCHHHH
Confidence 69999998753 345678876521110 02347889999999875 3576 5456779999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||.++.
T Consensus 72 ~~l~~yl~~~~ 82 (86)
T 3ph2_B 72 AAVAAYVLDQA 82 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 43
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=99.36 E-value=1.1e-13 Score=78.31 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=45.8
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||+.++.+ .+|.+..+.. .+.. -..++.+.|..+|+++. ..|| |...++++|+
T Consensus 13 ~C~~CHg~~g~g---~~~~~~~~~~-------------~l~~-~~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei 70 (85)
T 1gdv_A 13 NCAACHAGGNNA---IMPDKTLKKD-------------VLEA-NSMNTIDAITYQVQNGK-----NAMPAFGGRLVDEDI 70 (85)
T ss_dssp HTHHHHGGGCCS---SSTTSCCCHH-------------HHHH-TTCCSHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred hhHhhCCCCcCC---CCCCCCCCcH-------------HHHH-ccCCCHHHHHHHHHhCc-----CCCCCCCCCCCHHHH
Confidence 699999998532 3444322211 1111 12457889999999874 4677 4446679999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||.+++
T Consensus 71 ~~l~~yl~~~~ 81 (85)
T 1gdv_A 71 EDAANYVLSQS 81 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 44
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=99.33 E-value=2e-13 Score=77.93 Aligned_cols=72 Identities=24% Similarity=0.226 Sum_probs=47.8
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||+.++.+ ...||+|....-.. ...+| ...+++.|..+|+++. ..|| |.+.++++|+
T Consensus 13 ~C~~CHg~~g~g-~~~~P~L~~~~~~~--~l~~~----------~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei 74 (89)
T 1f1f_A 13 NCAACHMGGRNV-IVANKTLSKSDLAK--YLKGF----------DDDAVAAVAYQVTNGK-----NAMPGFNGRLSPLQI 74 (89)
T ss_dssp HTHHHHGGGCCS-SSTTCCSSHHHHHH--HSTTT----------TTCHHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred HhHHhCCCCCCC-CcCCCCCCHHHHHH--Hhhcc----------CccCHHHHHHHHHcCC-----CCCCccccCCCHHHH
Confidence 699999999753 34689995310000 00000 0123788999998874 4577 5555679999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||++++
T Consensus 75 ~~l~~yl~~~~ 85 (89)
T 1f1f_A 75 EDVAAYVVDQA 85 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 45
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=99.33 E-value=3.8e-12 Score=74.61 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCC-------CCC-CCC
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT-------KMI-FAG 73 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~-------~Mp-~~~ 73 (92)
+|++||..++.+ ...||.+. .+.+...+ .|+.+.|..+|+++...+|.. .|| |..
T Consensus 15 ~Ca~CHg~~g~g-~~~g~~~~---------------~p~l~~~~-~~~~~~l~~~i~~g~~~Mp~~~~~~~~~~M~~~~~ 77 (105)
T 2ce0_A 15 ACAACHDTGGNI-IQPGATLF---------------TKDLERNG-VDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGP 77 (105)
T ss_dssp HTTTTSGGGCCS-SSTTCCSS---------------HHHHHHTT-CCSHHHHHHHHHHCBTTBCBCBTTCCSGGGBCSSC
T ss_pred HHHHhCCCCCCc-CCCCcccC---------------CcchhhcC-CCCHHHHHHHHHhCcCCCCcccccccccccccccC
Confidence 699999999643 23454331 11121111 267899999999876544432 243 445
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
.++++||++|++||+++.
T Consensus 78 ~ls~~ei~~l~~yl~~~~ 95 (105)
T 2ce0_A 78 RLQDEEIKLLAEFVKFQA 95 (105)
T ss_dssp CBCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 667999999999999874
No 46
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=99.32 E-value=7.6e-13 Score=75.19 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=32.1
Q ss_pred cccHHHHHHHHhCCCCCCCCCCCC-CCC-CCCHHHHHHHHHHHhhcc
Q psy8407 47 TWNKDTLFEYLENPKKYIPGTKMI-FAG-IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 47 ~~~~~~l~~~i~~P~~~~p~~~Mp-~~~-~~~~~d~~~liayL~sl~ 91 (92)
.|+.+.|..+|+++. ..|| |.. .++++|+++|++||.++.
T Consensus 43 ~~~~~~l~~~i~~g~-----~~Mp~~~~~~ls~~ei~~l~~yi~~~~ 84 (85)
T 3cu4_A 43 IRTVRDVAAYIRNPG-----PGMPAFGEAMIPPADALKIGEYVVASF 84 (85)
T ss_dssp CCSHHHHHHHTTSCC-----TTSCCCCTTTSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcCC-----CCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 467899999999864 2487 554 577999999999999874
No 47
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=99.30 E-value=1.7e-12 Score=74.52 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=46.6
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhc-CccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKK-GITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQE 79 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~-~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d 79 (92)
+|++||+.++.+ ...+|+|.... +... ...+++++|..+|+++. ..|| |.+.++++|
T Consensus 16 ~C~~CHg~~g~g-~~~~p~l~~~~---------------~~~~~~~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~e 74 (91)
T 1ls9_A 16 NCAACHLGGNNS-VLADKTLKKDA---------------IEKYLEGGLTLEAIKYQVNNGK-----GAMPAWADRLDEDD 74 (91)
T ss_dssp HTHHHHGGGCCS-SSTTSCSSHHH---------------HHHHSTTCSCHHHHHHHHHHCB-----TTBCCCTTTSCHHH
T ss_pred HhHHhCCCCCCC-CCCCCCCCchh---------------HHHhccCCCCHHHHHHHHHcCc-----CCCcchhhhCCHHH
Confidence 699999987542 33456665310 0000 01246889999999874 4577 555677999
Q ss_pred HHHHHHHHhhcc
Q psy8407 80 RGDLIAYLEQAS 91 (92)
Q Consensus 80 ~~~liayL~sl~ 91 (92)
+++|++||+++.
T Consensus 75 i~~l~~yl~~~~ 86 (91)
T 1ls9_A 75 IEAVSNYVYDQA 86 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999874
No 48
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=99.29 E-value=5.1e-13 Score=76.03 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=46.7
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||+.++ ..+||++....+... .|. ....+.+.|..+|+++. ..|| |...++++|+
T Consensus 13 ~C~~CHg~~g---~~~~p~~~~~~~~~~----~~l--------~~~~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei 72 (88)
T 3dmi_A 13 NCAACHAGGQ---NVIMPEKTLEKEALD----QYL--------AGGRTEKSIISQVTGGK-----NAMPAFGGRLSDEEI 72 (88)
T ss_dssp HTHHHHGGGC---CSSSTTSCSSHHHHH----HHS--------TTCSSHHHHHHHHHHCB-----TTBCCCTTTSCHHHH
T ss_pred HHHHhCCCCC---CCcCCCCCCCHHHHH----HHH--------hcCCCHHHHHHHHHcCc-----CCCCCcCCCCCHHHH
Confidence 6999999553 457887764322110 000 00236788999999875 3577 4445679999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||+++.
T Consensus 73 ~~l~~yl~~~~ 83 (88)
T 3dmi_A 73 ANVAAYVLASA 83 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 49
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=99.28 E-value=1.1e-12 Score=80.75 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=33.8
Q ss_pred cccHHHHHHHHhCCCCCC-------------CCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 47 TWNKDTLFEYLENPKKYI-------------PGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 47 ~~~~~~l~~~i~~P~~~~-------------p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
.|+.++|..+|++|..+. +...||....++++||++|++||++++
T Consensus 66 ~~~~~~l~~~l~~p~~~~~~~~~~~~~~~~~~~~~MP~~~~Lsd~ei~alaaYl~~~~ 123 (137)
T 1mz4_A 66 RDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEP 123 (137)
T ss_dssp CSSHHHHHHHHHSCBCTTSSSBCTTTSCCGGGTTTSGGGTTCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchhhcccchhhhcccccccCCCCCCCCCCCHHHHHHHHHHHHHcc
Confidence 356889999999985432 235798324356999999999999874
No 50
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=99.28 E-value=6e-13 Score=81.65 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=51.2
Q ss_pred CccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-------CCCCCCCCCCCCC
Q psy8407 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-------YIPGTKMIFAGIK 75 (92)
Q Consensus 3 C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-------~~p~~~Mp~~~~~ 75 (92)
|++||..++.+....+|+|.+...... ...+++++|..+|.++.. ..+++.||....+
T Consensus 11 Ca~CHg~~g~G~~~~~P~L~~~~~~~~---------------~~~~~~~~l~~~i~~g~~g~~~~~g~~~~~~MP~~~~L 75 (131)
T 1c52_A 11 CAGCHQQNGQGIPGAFPPLAGHVAEIL---------------AKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFAQL 75 (131)
T ss_dssp HHHHHCTTSCCBTTTBCCCTTHHHHHH---------------TSTTHHHHHHHHHHHCEEEEEEETTEEEEEEECCCTTS
T ss_pred HHHhcCCCCCCCCCCCCCCCCCccccc---------------cccCCHHHHHHHHHhcccccccccCCccCCCCCCcccC
Confidence 999999997654456899987522110 012368899999987642 1123578844366
Q ss_pred CHHHHHHHHHHHhhcc
Q psy8407 76 KPQERGDLIAYLEQAS 91 (92)
Q Consensus 76 ~~~d~~~liayL~sl~ 91 (92)
+++||.+|++||+++.
T Consensus 76 sd~ei~~l~~Yl~~~~ 91 (131)
T 1c52_A 76 KDEEIAAVLNHIATAW 91 (131)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 7999999999999874
No 51
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.26 E-value=8.6e-13 Score=84.65 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=47.7
Q ss_pred CCccCccccCCCCCC-CCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCC-CCC-CCCCCCHH
Q psy8407 2 KCAQCHTIEAGGAHK-VGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT-KMI-FAGIKKPQ 78 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~-~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~-~Mp-~~~~~~~~ 78 (92)
+|++||+.++.+... .+|+|.+.. ..|..+.|..|........+.. .|| |...++++
T Consensus 118 ~C~~CHg~~g~g~~~~~~P~L~g~~--------------------~~~~~~~l~~~~~g~~~~~~~~~~Mp~~~~~Ls~~ 177 (190)
T 1m70_A 118 ACTGCHAPNGVGNDLAGFPKLGGQH--------------------AAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNK 177 (190)
T ss_dssp CSHHHHCTTSCCBGGGTBCCCTTCC--------------------HHHHHHHHHHHHHTSCCTTTTTCHHHHHHTTCCHH
T ss_pred chhhcCCCCCCCCCCCCCCCcCCCC--------------------HHHHHHHHHHHHhCCCCCCCccccHHHHHHhCCHH
Confidence 799999999754332 589998742 1234566666665433222333 698 54556799
Q ss_pred HHHHHHHHHhhcc
Q psy8407 79 ERGDLIAYLEQAS 91 (92)
Q Consensus 79 d~~~liayL~sl~ 91 (92)
||++|++||++|+
T Consensus 178 ei~~l~~Yl~sl~ 190 (190)
T 1m70_A 178 DIEALSSYIQGLH 190 (190)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999985
No 52
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=99.26 E-value=2e-12 Score=73.93 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=31.8
Q ss_pred ccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhcc
Q psy8407 48 WNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 48 ~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl~ 91 (92)
|+.+.|..+|+++. ..|| |...++++|+++|++||+++.
T Consensus 44 ~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei~~l~~yl~~~~ 83 (90)
T 1cyi_A 44 FKVESIIYQVENGK-----GAMPAWADRLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp SSHHHHHHHHHHCB-----TTBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCC-----CCCCcccccCCHHHHHHHHHHHHhcc
Confidence 57889999999863 4687 555567999999999999874
No 53
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=99.25 E-value=3e-12 Score=72.98 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=31.7
Q ss_pred ccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhcc
Q psy8407 48 WNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 48 ~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl~ 91 (92)
++.+.|..+|+++. ..|| |...++++|+++|++||+++.
T Consensus 45 ~~~~~l~~~i~~g~-----~~Mp~~~~~ls~~ei~~l~~yl~~~~ 84 (89)
T 1c6r_A 45 FNLEAITYQVENGK-----GAMPAWSGTLDDDEIAAVAAYVYDQA 84 (89)
T ss_dssp SSHHHHHHHHHHCB-----TTBCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCC-----CCCCCCCCcCCHHHHHHHHHHHHHHc
Confidence 46889999999874 4577 545667999999999999875
No 54
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=9.3e-13 Score=98.65 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=53.6
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||..++.+.+..+|+|.++.. ++.+.|.++|+++....+ .|| |...++++||
T Consensus 603 ~C~~CHg~~g~g~~~~~P~L~~~~~---------------------~~~~~l~~~i~~g~~~~~--~Mp~~~~~ls~~ei 659 (677)
T 1kb0_A 603 NCVFCHGVPGVDRGGNIPNLGYMDA---------------------SYIENLPNFVFKGPAMVR--GMPDFTGKLSGDDV 659 (677)
T ss_dssp HTHHHHCSTTTSCCSSSCCGGGSCH---------------------HHHHTHHHHHSSCTTGGG--TCCCCTTTSCTTHH
T ss_pred hhhhhCCCCCcCCCCCCCCccccCc---------------------ccHHHHHHHHHcCCCCCC--CCCcccccCCHHHH
Confidence 5999999998655678999998642 367899999999875443 487 6555679999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||++++
T Consensus 660 ~~l~~Yl~~l~ 670 (677)
T 1kb0_A 660 ESLKAFIQGTA 670 (677)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999985
No 55
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=99.23 E-value=7.3e-13 Score=75.56 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCC-CCCHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAG-IKKPQE 79 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~-~~~~~d 79 (92)
+|++||+.++.+. ...|+|.+.. ..+ ..+.+.|...|++.. ..|| |.. .++++|
T Consensus 19 ~C~~CHg~~~~g~-~~~~~l~~~~-------------~~~-----~~~~~~~~~~i~~G~-----~~Mp~~~~~~ls~~e 74 (87)
T 2zon_G 19 ACVVCHASGVANA-PKLGDKQAWA-------------PFL-----AQGADALLATVLKGK-----GAMPPRGGTAADEAT 74 (87)
T ss_dssp TTHHHHTTTGGGC-CCTTCHHHHH-------------HHH-----HHCHHHHHHHHHHCB-----TTBCGGGGCCCCHHH
T ss_pred HhHHHcCCCCCCC-CCCCCHHHHH-------------HHH-----hcCHHHHHHHHHcCc-----CCCCCCCCCCCCHHH
Confidence 6999999985431 1124443211 111 114667777887754 2587 544 567999
Q ss_pred HHHHHHHHhhccC
Q psy8407 80 RGDLIAYLEQASK 92 (92)
Q Consensus 80 ~~~liayL~sl~~ 92 (92)
+++|++||.+++|
T Consensus 75 i~~l~~yl~~~~~ 87 (87)
T 2zon_G 75 LRAAVAYMMDAAR 87 (87)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 56
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=99.22 E-value=1.5e-11 Score=72.23 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=30.2
Q ss_pred ccHHHHHHHHhCCCCCCCCCCCC-CCC-CCCHHHHHHHHHHHhhc
Q psy8407 48 WNKDTLFEYLENPKKYIPGTKMI-FAG-IKKPQERGDLIAYLEQA 90 (92)
Q Consensus 48 ~~~~~l~~~i~~P~~~~p~~~Mp-~~~-~~~~~d~~~liayL~sl 90 (92)
.+.+.|...|+++. ..|| |.. .++++||++|++||++.
T Consensus 58 ~~~~~l~~~i~~G~-----~~MP~~~~~~Lsd~ei~~l~~Yi~~~ 97 (99)
T 3dp5_A 58 RTVRDVAAYIRNPG-----PGMPAFGEAMIPPADALKIGEYVVAS 97 (99)
T ss_dssp CSHHHHHHHTTSCC-----TTSCCCCTTTSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCC-----CCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 46889999999873 4587 554 57799999999999863
No 57
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=99.22 E-value=6.7e-12 Score=70.58 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=44.5
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||..++.+ +|+|.++..... ...+.+.|...|++.. ..|| |...++++||
T Consensus 13 ~C~~CHg~~g~g----~P~l~~~~~~~~----------------~~~~~~~l~~~i~~G~-----~~Mp~~~~~Lsd~ei 67 (78)
T 1gks_A 13 TCSSCHDRGVAG----APELNAPEDWAD----------------RPSSVDELVESTLAGK-----GAMPAYDGRADREDL 67 (78)
T ss_dssp CSHHHHTTTGGG----CCCTTCHHHHHT----------------SCCCHHHHHHHHHHCB-----TTBCCCBTTBCHHHH
T ss_pred chhhhCCCCCCC----CCCCCCHHHhhh----------------ccCCHHHHHHHHHcCC-----CCCCCCCCCCCHHHH
Confidence 799999998532 688875421100 0125788888888763 3587 5455679999
Q ss_pred HHHHHHHhhc
Q psy8407 81 GDLIAYLEQA 90 (92)
Q Consensus 81 ~~liayL~sl 90 (92)
++|++||++.
T Consensus 68 ~~l~~yi~~~ 77 (78)
T 1gks_A 68 VKAIEYMLST 77 (78)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999863
No 58
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=99.20 E-value=4.4e-12 Score=80.31 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=32.5
Q ss_pred cHHHHHHHHhCCCCC-------------CCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 49 NKDTLFEYLENPKKY-------------IPGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 49 ~~~~l~~~i~~P~~~-------------~p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
+.++|..+|++|..+ .....||....++++|+++|++||.+++
T Consensus 94 ~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~~~Mp~~~~Lsd~ei~~laaYl~sl~ 149 (163)
T 1w5c_T 94 NIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEP 149 (163)
T ss_dssp SHHHHHHHHHSCBCTTSSSBCTTTSCCSTTTTTSGGGTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCccccccchhhhhccccccccCcCCCCCCCCHHHHHHHHHHHHHcc
Confidence 678999999998541 1224688335567999999999999875
No 59
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=99.19 E-value=1.2e-11 Score=85.66 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=50.6
Q ss_pred CCccCccccCCCCCCC-CCCccC-ccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHH
Q psy8407 2 KCAQCHTIEAGGAHKV-GPNLHG-LIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQ 78 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~-GP~L~~-i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~ 78 (92)
+|++||+.++.+.... +|+|.+ ..... ..++++|.+.|+++. . ..|| +...++++
T Consensus 232 ~Ca~CHg~~g~G~~~~~~P~L~~~~~~~~------------------~~~~~~l~~~i~~g~---~-g~MP~~~~~Ls~~ 289 (311)
T 3mk7_C 232 TCAVCHGQGGEGMAALGAPKLNSAAGWIY------------------GSSLGQLQQTIRHGR---N-GQMPAQQQYLGDD 289 (311)
T ss_dssp TTHHHHCTTSCCBTTTTBCCSSCGGGCSS------------------CCSHHHHHHHHHHCB---C-CEECCCTTTTHHH
T ss_pred hHHhcCCCCCCCCcccCCCCCCcchhhhc------------------cCCHHHHHHHHHhCc---c-ccCcccccCCCHH
Confidence 6999999997654333 799998 21111 136889999999863 2 3587 54567799
Q ss_pred HHHHHHHHHhhccC
Q psy8407 79 ERGDLIAYLEQASK 92 (92)
Q Consensus 79 d~~~liayL~sl~~ 92 (92)
|+++|++||.+++.
T Consensus 290 ei~~laaYl~sl~~ 303 (311)
T 3mk7_C 290 KVHLLAAYVYSLSQ 303 (311)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999863
No 60
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=99.17 E-value=2.4e-12 Score=82.10 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=43.2
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC-CCCCCCCC-CCCCCCHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK-YIPGTKMI-FAGIKKPQE 79 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~-~~p~~~Mp-~~~~~~~~d 79 (92)
+|++||+.++.+ ...+|+|.+. ..++|..+|.+... ..++..|| |...++++|
T Consensus 118 ~C~~CHg~~g~g-~~~~P~L~~~------------------------~~~~~~~~l~~~~~g~~~~~~Mp~~~~~Ls~~e 172 (183)
T 1h1o_A 118 ACMECHGSDGQG-AGPFPRLAGQ------------------------RYGYIIQQLTYFHNGTRVNTLMNQIAKNITVAQ 172 (183)
T ss_dssp CTHHHHCTTSCC-BTTBCCCTTC------------------------CHHHHHHHHHHHHHTSSCCHHHHHHHTTCCHHH
T ss_pred cchhhCCCCCCC-CCCCCCCCCC------------------------CHHHHHHHHHHHHcCCCCCcchHHHHHhCCHHH
Confidence 799999998765 5567888863 13344444443221 12235687 544567999
Q ss_pred HHHHHHHHhhc
Q psy8407 80 RGDLIAYLEQA 90 (92)
Q Consensus 80 ~~~liayL~sl 90 (92)
+++|++||++|
T Consensus 173 i~~l~~yl~sl 183 (183)
T 1h1o_A 173 MKDVAAYLSSL 183 (183)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 61
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=99.13 E-value=3.4e-11 Score=68.70 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=30.5
Q ss_pred cH-HHHHHHHhCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHhhcc
Q psy8407 49 NK-DTLFEYLENPKKYIPGTKMI-FAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 49 ~~-~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~~~liayL~sl~ 91 (92)
+. +.|..+|+++. +.|| |...++++|+++|++||.++.
T Consensus 49 ~~~~~~~~~i~~g~-----~~Mp~~~~~ls~~ei~~l~~yl~~l~ 88 (93)
T 3dr0_A 49 SLEEAVAYQVTNGQ-----GAMPAFGGRLSDADIANVAAYIADQA 88 (93)
T ss_dssp CHHHHHHHHHHHCB-----TTBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCC-----CCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45 88999999875 4577 445667999999999999874
No 62
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=99.12 E-value=2.5e-11 Score=68.63 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=41.7
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCC--CCCHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAG--IKKPQ 78 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~--~~~~~ 78 (92)
+|++||..++.+ +|.|..+... .+.+. -+.++|...|++.. ..|| |.. .++++
T Consensus 13 ~Ca~CHg~~~~g----~p~~~~~~~~----------~~~l~-----~~~~~l~~~i~~G~-----~~Mp~~~~~~~Lsd~ 68 (81)
T 1kx2_A 13 ACTVCHSMGVAG----APKSHNTADW----------EPRLA-----KGVDNLVKSVKTGL-----NAMPPGGMCTDCTDE 68 (81)
T ss_dssp STTSSTTTTGGG----CCCTTCSTTT----------HHHHT-----TCSTTHHHHHHHTC-----TTSCGGGGCSSCCHH
T ss_pred HHHHHcCCCCCC----CCCCCChhhh----------hhhhh-----cCHHHHHHHHHhCc-----CCCCCCCCCCCCCHH
Confidence 799999976432 4776654211 01110 13456777777654 2587 422 46799
Q ss_pred HHHHHHHHHhhcc
Q psy8407 79 ERGDLIAYLEQAS 91 (92)
Q Consensus 79 d~~~liayL~sl~ 91 (92)
|+++|++||.+++
T Consensus 69 ei~~l~~Yi~~~~ 81 (81)
T 1kx2_A 69 DYKAAIEFMSKAK 81 (81)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999875
No 63
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=99.11 E-value=1.4e-11 Score=78.87 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=46.2
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCC-CCCCCCCCC-CCCCCCHH
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK-KYIPGTKMI-FAGIKKPQ 78 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~-~~~p~~~Mp-~~~~~~~~ 78 (92)
++|++||..++.+.....|+|.|. ++++|.+.|++-. +..+...|+ +...++++
T Consensus 9 ~~C~~CHg~~G~~~~~~~P~LaG~------------------------~~~~i~~~l~~~~~g~~~~~~M~~~~~~Ls~~ 64 (174)
T 3vrd_A 9 NNCAGCHGTRGNSAGPASPSIAQM------------------------DPAVFVEVMEQFKSGEIQSTIMGRIAKGYSTA 64 (174)
T ss_dssp GGGHHHHCGGGCCCCSSSCCCTTC------------------------CHHHHHHHHHHHHHTSSCCSSHHHHHTTSCHH
T ss_pred hhHHHhCCCcCCCCCCCCCCcCCC------------------------CHHHHHHHHHHhhcCCccccccchhhccCCHH
Confidence 479999999876555567888652 4666666665421 223445675 44456799
Q ss_pred HHHHHHHHHhhcc
Q psy8407 79 ERGDLIAYLEQAS 91 (92)
Q Consensus 79 d~~~liayL~sl~ 91 (92)
|+++|++||.++.
T Consensus 65 di~~la~Y~~s~~ 77 (174)
T 3vrd_A 65 DFQKMAEYFKQQT 77 (174)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHhhhhccc
Confidence 9999999999874
No 64
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.04 E-value=4.9e-11 Score=89.52 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=51.0
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||..++.+ +..+|+|.+... ++.+.|..+|+++... +.|| |...++++||
T Consensus 605 ~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~---~~Mp~~~~~ls~~ei 659 (689)
T 1yiq_A 605 YCSQCHGIHAVS-GGVLPDLRKLTP---------------------EKHQMFLGILFGGRVP---DGMPSFADAFTPEQV 659 (689)
T ss_dssp HTHHHHCGGGCC-CSSSCCTTSCCH---------------------HHHHTHHHHHTTTTGG---GTCCCCTTTCCHHHH
T ss_pred hhhhhCCCCCcC-CCCCCCcccCCc---------------------CCHHHHHHHHHcCCCC---CCCCccccCCCHHHH
Confidence 699999999765 578899987421 3678899999987532 4687 5566779999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||+++.
T Consensus 660 ~~l~~Yl~~~~ 670 (689)
T 1yiq_A 660 DQIHQYLIKRA 670 (689)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999874
No 65
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=99.04 E-value=1.1e-10 Score=74.80 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCC------CCCCCCCC-CCC
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK------YIPGTKMI-FAG 73 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~------~~p~~~Mp-~~~ 73 (92)
++|++||+.++.+....+|+|.+.. ..|..+.|..++..... ..+.+.|| +..
T Consensus 12 ~~C~~CHg~~g~g~~~~~P~L~~~~--------------------~~~~~~~l~~~~~G~~~~~~~~~~~~~~~Mp~~~~ 71 (190)
T 1m70_A 12 AVCGACHGVDGNSPAPNFPKLAGQG--------------------ERYLLKQLQDIKAGSTPGAPEGVGRKVLEMTGMLD 71 (190)
T ss_dssp GGGHHHHCTTSCCCCTTSCCCTTCC--------------------HHHHHHHHHHHHHHHSTTCCTTSSCCCGGGTTTTT
T ss_pred hHHHhhcCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCccccccccCCCCcchHHHHH
Confidence 3799999999765445689998741 13456666555432210 13356787 445
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
.++++|+.+|++||.++.
T Consensus 72 ~ls~~e~~~l~~yl~~~~ 89 (190)
T 1m70_A 72 PLSDQDLEDIAAYFSSQK 89 (190)
T ss_dssp TCCHHHHHHHHHHHHHSC
T ss_pred HCCHHHHHHHHHHHHhCC
Confidence 567999999999999864
No 66
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=4.2e-11 Score=89.53 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=50.6
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||..++.+ +..+|+|.+... ++.+.|..+|++..... ..|| |...++++||
T Consensus 590 ~Ca~CHg~~g~g-~~~~P~L~~~~~---------------------~~~~~~~~~i~~G~~~~--~~Mp~~~~~ls~~ei 645 (668)
T 1kv9_A 590 FCSVCHGMGTIS-GGLIPDLRQSSD---------------------ATREHFQQIVLQGALKP--LGMPSFDDSLKPEEV 645 (668)
T ss_dssp HTHHHHCGGGCC-CSSSCCGGGCCH---------------------HHHHTHHHHHHHCTTGG--GTCCCCTTTCCHHHH
T ss_pred hhHhhCcCCCcC-CCCCCCCcCCCC---------------------CCHHHHHHHHHhCCCCC--CCCCccccCCCHHHH
Confidence 699999999765 678899987421 25778888888865322 2387 6666779999
Q ss_pred HHHHHHHhhcc
Q psy8407 81 GDLIAYLEQAS 91 (92)
Q Consensus 81 ~~liayL~sl~ 91 (92)
++|++||+++.
T Consensus 646 ~~l~~yl~~~~ 656 (668)
T 1kv9_A 646 EQIKLYVMSRE 656 (668)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999999874
No 67
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.02 E-value=4.6e-11 Score=87.35 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=48.1
Q ss_pred CCccCccccCCCCCCCCCCcc-CccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC--CCCCH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLH-GLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA--GIKKP 77 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~-~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~--~~~~~ 77 (92)
+|++||..++. +..||+|. ++..+ .++++|..+|+++. ++ .|| |. ..+++
T Consensus 46 ~Ca~CHg~~g~--g~~~p~l~~~~~~~--------------------~~~~~l~~~i~~G~---~~-~Mp~~~~~~~ls~ 99 (543)
T 1nir_A 46 RCAGCHGVLRK--GATGKPLTPDITQQ--------------------RGQQYLEALITYGT---PL-GMPNWGSSGELSK 99 (543)
T ss_dssp HTHHHHTTTTC--CSSSSCCSHHHHHH--------------------HCHHHHHHHHHHCC---SS-SCCCSTTTTSSCH
T ss_pred hhHhhCCCCCC--CCCCCCCcchhccc--------------------CCHHHHHHHHHcCC---CC-CCCCcccccCCCH
Confidence 69999999864 45689996 22211 25889999999863 34 687 43 56779
Q ss_pred HHHHHHHHHHhhcc
Q psy8407 78 QERGDLIAYLEQAS 91 (92)
Q Consensus 78 ~d~~~liayL~sl~ 91 (92)
+|+++|++||++++
T Consensus 100 ~ei~~l~~yl~~~~ 113 (543)
T 1nir_A 100 EQITLMAKYIQHTP 113 (543)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999875
No 68
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=98.99 E-value=5.5e-11 Score=85.24 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=49.2
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCC------C-CCCCCCCCCC
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKY------I-PGTKMIFAGI 74 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~------~-p~~~Mp~~~~ 74 (92)
+|++||+.++.+....+|+|.+. .. +..+.+++.++|+++... . .+..||...
T Consensus 349 ~Ca~CHg~~g~g~~~~~P~L~~~--~~-----------------~~~~~~~~~~~i~~G~~~~~~~~g~~~~~~MP~~~- 408 (442)
T 2zoo_A 349 NCMACHQANGEGIPGAFPPLAKS--DY-----------------LNNNPLLGVNAIIKGLSGPIKVNNVNYNGVMPAMN- 408 (442)
T ss_dssp HTHHHHCTTSCCBTTTBCCCTTC--HH-----------------HHHCHHHHHHHHHHCEESCEEETTEEECCEECCCC-
T ss_pred hhHHhCCCCCCCCCCCCCCCCCc--cc-----------------ccCCHHHHHHHHHcCccccccccCCccCCCCCCCC-
Confidence 59999999976544567999872 11 011466788888876431 1 135798555
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy8407 75 KKPQERGDLIAYLEQAS 91 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~ 91 (92)
++++|+++|++||+++.
T Consensus 409 Lsd~ei~~l~~Yl~~~~ 425 (442)
T 2zoo_A 409 LNDEDIANVITFVLNNW 425 (442)
T ss_dssp CCHHHHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 67999999999999874
No 69
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=98.90 E-value=3.4e-10 Score=64.45 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=39.1
Q ss_pred CCCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCC--CCCH
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAG--IKKP 77 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~--~~~~ 77 (92)
++|++||..+..+ +|.|..... +...+.. ..+.+.|...|.+.. ..|| |.. .+++
T Consensus 13 ~~Ca~CHg~~~~G----~p~~~~~~~----------~~~~l~~---~~~~~~l~~~i~~G~-----~~MP~~~~~~~Lsd 70 (83)
T 1cc5_A 13 KYCNACHGTGLLN----APKVGDSAA----------WKTRADA---KGGLDGLLAQSLSGL-----NAMPPKGTCADCSD 70 (83)
T ss_dssp HTTHHHHTTTTTT----CCCTTCHHH----------HHHHHHH---HTSSTTTHHHHHHCB-----TTBCSSSSCSSCCH
T ss_pred HHHHHHCcCCCCC----CCCCCCHHH----------HHHHhhc---ccCHHHHHHHHHcCc-----cCCCCCCCCCCCCH
Confidence 3799999987432 466544211 0000000 002344566666653 2487 544 4679
Q ss_pred HHHHHHHHHHhhc
Q psy8407 78 QERGDLIAYLEQA 90 (92)
Q Consensus 78 ~d~~~liayL~sl 90 (92)
+|+++|++||.++
T Consensus 71 ~ei~~v~~yi~~~ 83 (83)
T 1cc5_A 71 DELKAAIGKMSGL 83 (83)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999863
No 70
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=98.90 E-value=2e-10 Score=73.08 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=44.3
Q ss_pred CCCccCccccCCCCC-CCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCC-CCCCCC-CCCCCCH
Q psy8407 1 MKCAQCHTIEAGGAH-KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYI-PGTKMI-FAGIKKP 77 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~-~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~-p~~~Mp-~~~~~~~ 77 (92)
.+|++||..++.+.. ..+|+|.+.. ..|..+.|..++....... ....|| +...+++
T Consensus 14 ~~Ca~CHg~~g~g~~~~~~P~L~~~~--------------------~~~~~~~l~~~~~g~r~~~~~~~~Mp~~~~~ls~ 73 (183)
T 1h1o_A 14 SDCMVCHGMTGRDTLYPIVPRLAGQH--------------------KSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDS 73 (183)
T ss_dssp GGTHHHHCBTTBCCSSTTSCCCTTCC--------------------HHHHHHHHHHHHTTCCCCHHHHHHTHHHHHTCCH
T ss_pred hHHHHhcCCCCCCCCCCCCCCCCCCC--------------------HHHHHHHHHHHHcCCCCCCCcchHHHHHHHhCCH
Confidence 379999999975433 4578887641 1234455555443221100 024687 4344669
Q ss_pred HHHHHHHHHHhhcc
Q psy8407 78 QERGDLIAYLEQAS 91 (92)
Q Consensus 78 ~d~~~liayL~sl~ 91 (92)
+|+.+|++||.++.
T Consensus 74 ~e~~al~~yl~~~~ 87 (183)
T 1h1o_A 74 AKITALADYFNAQK 87 (183)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999875
No 71
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.87 E-value=6.8e-10 Score=82.04 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=48.1
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CC--CCCCHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FA--GIKKPQ 78 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~--~~~~~~ 78 (92)
+|++||+.++. +..||+|..-.- ..+++++|..+|++.. ++ .|| |. ..++++
T Consensus 64 ~Ca~CHg~~g~--G~~gp~L~~~~~-------------------~~~~~~~l~~~i~~G~---~~-~Mp~~~~~~~Lsd~ 118 (567)
T 1qks_A 64 RCAGCHGVLRK--GATGKALTPDLT-------------------RDLGFDYLQSFITYAS---PA-GMPNWGTSGELSAE 118 (567)
T ss_dssp HTHHHHCTTSS--CSSSCCCCHHHH-------------------HHHCHHHHHHHHTTCC---CC-CCTTTSCCCCCCHH
T ss_pred hhHhhCCCCCC--CCCCCCCCchhh-------------------ccCCHHHHHHHHHhCC---CC-CCCCccccCCCCHH
Confidence 69999999864 467899864100 0125889999998763 34 688 53 567799
Q ss_pred HHHHHHHHHhhcc
Q psy8407 79 ERGDLIAYLEQAS 91 (92)
Q Consensus 79 d~~~liayL~sl~ 91 (92)
|+++|++||+++.
T Consensus 119 ei~~l~~yi~~~~ 131 (567)
T 1qks_A 119 QVDLMANYLLLDP 131 (567)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcc
Confidence 9999999999875
No 72
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=98.86 E-value=2.1e-09 Score=70.73 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=45.1
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHH-HHHHHHhCCCCCCCCCCCC--CCCCCCHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKD-TLFEYLENPKKYIPGTKMI--FAGIKKPQ 78 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~-~l~~~i~~P~~~~p~~~Mp--~~~~~~~~ 78 (92)
+|++||+.++.+ ...+|+|.+..+..... .. .+..+..|... .|..+++ ..|| |...++++
T Consensus 45 ~Ca~CHG~~G~G-~~~~P~L~g~~~~l~~~-~~------~~~~g~~~~~~~~l~~~~~--------~~MP~~~~~~Lsde 108 (205)
T 2xts_B 45 NCASCHGDFAEG-LDSWPVLAGGDGSLTDP-RP------VKTIGSYWPYLSTVYDYVH--------RSMPFGSAQTLSVD 108 (205)
T ss_dssp HTHHHHCTTSSC-STTSCCCSCCTTCTTSS-SC------CCCTTTTCCCHHHHHHHHH--------HHCSTTSCSCCCHH
T ss_pred hhHHhCCCCCCC-CCCCCCccCCccccccc-ch------hhhhccccchhHHHhccCc--------CCCCcccccCCCHH
Confidence 699999999754 34579998854322110 00 01123345433 3444443 2376 44567799
Q ss_pred HHHHHHHHHhhcc
Q psy8407 79 ERGDLIAYLEQAS 91 (92)
Q Consensus 79 d~~~liayL~sl~ 91 (92)
||.+|++||+++.
T Consensus 109 Ei~aL~aYl~sl~ 121 (205)
T 2xts_B 109 DTYAITAFLLYSN 121 (205)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999875
No 73
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=98.83 E-value=9.1e-10 Score=76.19 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=48.1
Q ss_pred CCccCccccCCCCCCCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCCCCCCC-CCCCCCHHHH
Q psy8407 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMI-FAGIKKPQER 80 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p~~~Mp-~~~~~~~~d~ 80 (92)
+|++||..++.+. ..+|+|.+...+.. .+.++|..+|+++. + ..|| |...++++|+
T Consensus 142 ~Ca~CHg~~g~g~-~g~P~L~~~~~~~g------------------~~~~~l~~~i~~G~---~-~~Mp~~~~~Ls~~ei 198 (311)
T 3mk7_C 142 YCSICHGSDAKGS-LGFPNLADQDWRWG------------------GDAASIKTSILNGR---I-AAMPAWGQAIGEEGV 198 (311)
T ss_dssp HTHHHHCTTSCCB-TTBCCSSSSCCSSC------------------CSHHHHHHHHHHCE---E-CCBCCCHHHHCHHHH
T ss_pred hHHHhCCCCCCCC-CCCCCCCCcccccC------------------CCHHHHHHHHHhCC---c-CCCccccccCCHHHH
Confidence 6999999987542 22599997532211 16889999999874 2 2577 4444569999
Q ss_pred HHHHHHHhh-cc
Q psy8407 81 GDLIAYLEQ-AS 91 (92)
Q Consensus 81 ~~liayL~s-l~ 91 (92)
++|++||++ +.
T Consensus 199 ~~laaYl~s~l~ 210 (311)
T 3mk7_C 199 KNVAAFVRKDLA 210 (311)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc
Confidence 999999998 64
No 74
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=98.76 E-value=9.8e-10 Score=70.25 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=40.0
Q ss_pred CCccCccccCCCCC--CCCCCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC--CCCCC-CCCCCC
Q psy8407 2 KCAQCHTIEAGGAH--KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP--GTKMI-FAGIKK 76 (92)
Q Consensus 2 ~C~~CH~~~~~~~~--~~GP~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p--~~~Mp-~~~~~~ 76 (92)
+|++||..++.|.. ..-|.|.+... ......|..|........+ ...|| +...++
T Consensus 100 ~Ca~CHg~~G~G~~~~~~~P~L~gq~~--------------------~yl~~~L~~~~~g~r~~~~~~~~~M~~~a~~Ls 159 (174)
T 3vrd_A 100 YCEKCHVESGKPLADQDEYHILAGQWT--------------------PYLRYAIEDFRAERRPMEKKMASKLKELLKAEG 159 (174)
T ss_dssp HTTTTSGGGGCCCTTCSSCCCCTTSCH--------------------HHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred hhHhhcCcCCCCCCCCCCCCccCCCCH--------------------HHHHHHHHHHHcCCcCCCCccchhhHHHHhhCC
Confidence 59999999875422 22466654210 0023344444332211111 12576 444566
Q ss_pred HHHHHHHHHHHhhcc
Q psy8407 77 PQERGDLIAYLEQAS 91 (92)
Q Consensus 77 ~~d~~~liayL~sl~ 91 (92)
|+||++|++||.|++
T Consensus 160 d~eI~alaaY~~S~k 174 (174)
T 3vrd_A 160 EDGLDALFAFYASQQ 174 (174)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999985
No 75
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=98.24 E-value=4e-06 Score=58.55 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=27.0
Q ss_pred cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
.|..++-+++.++.... +.... ++++|+++||+||++|+
T Consensus 265 dG~~~tL~evv~~y~~~--------~~~~~-Ls~~E~~~LvaFL~tLt 303 (328)
T 1zzh_A 265 SGKVWDLREAVSVMANS--------QLGAT-LDDTQVDQITAFLGTLT 303 (328)
T ss_dssp TTCBCCHHHHHHHHHSS--------TTSCC-CCHHHHHHHHHHHGGGC
T ss_pred CCccCCHHHHHHHhhcc--------ccCCC-CCHHHHHHHHHHHHHcC
Confidence 35566777777776532 11223 45999999999999986
No 76
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=98.19 E-value=4.9e-06 Score=58.04 Aligned_cols=39 Identities=13% Similarity=0.342 Sum_probs=26.1
Q ss_pred cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
.|..++-+++.+|... ..+ ... ++++|+++||+||+||+
T Consensus 262 dG~~~tL~evv~~~~~-------~~~-~~~-Ls~~e~~~LvAFL~sLt 300 (326)
T 1nml_A 262 SGAVWSLEEAVAVMGT-------AQL-GTE-LNNDEVKSIVAFLKTLT 300 (326)
T ss_dssp TCCBCCHHHHHHHTCC-------TTT-TCC-CCHHHHHHHHHHHGGGC
T ss_pred CCCcCCHHHHHHHhhh-------hcc-CCC-CCHHHHHHHHHHHHHcC
Confidence 3556777776666421 111 123 45999999999999986
No 77
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=98.18 E-value=1.5e-06 Score=60.68 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=27.0
Q ss_pred cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
.|..|+-++...|...++ + .. .++++|+++|++||++|+
T Consensus 253 dG~~~tL~evv~~~~~~~-------~-~~-~Ls~~E~~~LvaFL~sLt 291 (320)
T 3o5c_A 253 DGSVWTLEEAVNTMADIQ-------L-GQ-KLTEKETKEMVAFLNSLT 291 (320)
T ss_dssp TTCBCSHHHHHHHHHHHH-------H-SC-CCCHHHHHHHHHHHHTTC
T ss_pred CCCcCcHHHHHHHhcccc-------c-cc-CCCHHHHHHHHHHHHHcC
Confidence 355677777777764321 1 12 345999999999999985
No 78
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=98.16 E-value=3.4e-06 Score=59.18 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=25.8
Q ss_pred cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
.|..++-+++.+|...- +.... ++++|+++||+||++|+
T Consensus 276 dG~~~tL~evv~~y~~~--------~~~~~-Ls~~E~~~LvaFL~sLt 314 (338)
T 2c1v_A 276 SGVVWELAEAVKIMSSA--------QIGTE-LTDQQAEDITAFLGTLT 314 (338)
T ss_dssp TTCBCCHHHHHHHHHHH--------HTCCC-CCHHHHHHHHHHHHTTC
T ss_pred CCccCCHHHHHHHHHhh--------cccCC-CCHHHHHHHHHHHHHcC
Confidence 35566666666665421 11123 45999999999999986
No 79
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=98.12 E-value=3.7e-06 Score=58.59 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=24.7
Q ss_pred CccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 45 GITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 45 ~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
|..++-+++.++.... +.... ++++|+++||+||++|+
T Consensus 263 G~~~tL~evv~~y~~~--------~~~~~-Ls~~E~~~LvaFL~tLt 300 (323)
T 2vhd_A 263 GQVWELKDAVAIMGNA--------QLGKQ-LAPDDVENIVAFLHSLS 300 (323)
T ss_dssp TCBCCHHHHHHHHHHH--------HHCCC-CCHHHHHHHHHHHHTTC
T ss_pred CccCCHHHHHHHHhhc--------ccCCC-CCHHHHHHHHHHHHHcC
Confidence 4455666666554321 11123 45999999999999985
No 80
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=98.01 E-value=7.5e-06 Score=56.67 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy8407 75 KKPQERGDLIAYLEQAS 91 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~ 91 (92)
++++|+++|++||++|+
T Consensus 267 Ls~~e~~~LvaFL~sLt 283 (308)
T 1iqc_A 267 FNKDEVSKIVAFLKTLT 283 (308)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 56999999999999985
No 81
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=97.91 E-value=4.1e-05 Score=51.46 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=28.6
Q ss_pred cHHHHHHHHh---CC-CC--C---------CCC--CCCCCCCC------------CCHHHHHHHHHHHhhc
Q psy8407 49 NKDTLFEYLE---NP-KK--Y---------IPG--TKMIFAGI------------KKPQERGDLIAYLEQA 90 (92)
Q Consensus 49 ~~~~l~~~i~---~P-~~--~---------~p~--~~Mp~~~~------------~~~~d~~~liayL~sl 90 (92)
..++|..+|+ || .+ + .|+ ..||.... ..+|.++||++||...
T Consensus 123 G~dyIyslL~Gy~dpp~G~~~~~G~~~N~~Fpg~~iaMP~~L~~~~v~y~dGtp~~~~q~a~Dvv~FL~w~ 193 (241)
T 1pp9_D 123 GEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWA 193 (241)
T ss_dssp HHHHHHHHHTCCCCCCTTCCCCTTCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCccccCCcccccccCCCCcccccccccccceecCCCCccchHHHHHHHHHHHHHh
Confidence 4689999999 55 33 1 234 78984311 1189999999999865
No 82
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=97.91 E-value=4.1e-06 Score=57.25 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=40.5
Q ss_pred CCccCccccCCCCCCCC-----CCccCccCCCCCCCCCCcchHHhhhcCccccHHHHHHHHhCCCCCCC-CCCC-CCCCC
Q psy8407 2 KCAQCHTIEAGGAHKVG-----PNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIP-GTKM-IFAGI 74 (92)
Q Consensus 2 ~C~~CH~~~~~~~~~~G-----P~L~~i~~r~~~~~~g~~y~~~~~~~~~~~~~~~l~~~i~~P~~~~p-~~~M-p~~~~ 74 (92)
+|++||...+.+ +..| |.|..-.++.. --++.|...+....+..+ ...| |+...
T Consensus 70 ~Ca~CHg~~G~g-~~~G~~a~yP~l~~~~g~v~------------------~L~~~I~~c~~~~~g~~~~~~~M~p~~~~ 130 (275)
T 3oa8_A 70 SLETCDLGEGPG-KLEGAYAHLPRYFADTGKVM------------------DLEQRLLWCMETIQGRDTKPLVAKPFSGP 130 (275)
T ss_dssp CSTTCBSSSSBT-CCTTTGGGCSEEETTTTEEE------------------CHHHHHHHHHHHTTCCCCHHHHHSCSCBT
T ss_pred cccccCCccCCC-cccChhhhCcCccccCCCHH------------------HHHHHHHHHHHcccccccccccccccccc
Confidence 699999877532 2223 65554322211 124456666554332211 1124 45445
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy8407 75 KKPQERGDLIAYLEQAS 91 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~ 91 (92)
++++|+++|++|+.+++
T Consensus 131 Ls~~di~~laaY~asls 147 (275)
T 3oa8_A 131 GRTSDMEDLVAFIANKS 147 (275)
T ss_dssp TBCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 56999999999999885
No 83
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=97.91 E-value=3.5e-06 Score=48.97 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=15.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhh
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~s 89 (92)
||-..+ +++|++.|++||..
T Consensus 71 mpg~~I-s~eda~~Iv~YLa~ 90 (92)
T 3a9f_A 71 FPGSGI-SDDDAKTIGIWLHE 90 (92)
T ss_dssp STTCCC-CHHHHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHH
Confidence 554445 59999999999975
No 84
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=97.90 E-value=3.9e-05 Score=51.77 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=28.0
Q ss_pred cHHHHHHHHh----CCCC------------CCCCC--CCCCC---CC---------CCHHHHHHHHHHHhhc
Q psy8407 49 NKDTLFEYLE----NPKK------------YIPGT--KMIFA---GI---------KKPQERGDLIAYLEQA 90 (92)
Q Consensus 49 ~~~~l~~~i~----~P~~------------~~p~~--~Mp~~---~~---------~~~~d~~~liayL~sl 90 (92)
..++|..+|+ +|.. +.||+ .||.. ++ ..+|.++||++||...
T Consensus 126 G~dyIyslL~Gy~~dpp~g~~~~~G~~yN~~fpg~~iaMP~~L~~~~v~~~dGtpa~~~q~a~Dvv~FL~w~ 197 (248)
T 3cx5_D 126 GCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWC 197 (248)
T ss_dssp HHHHHHHHHHCCCSSCCTTCCCCTTCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCccccccCCCccccccCCCCCcCCCccccccceecCCCCccchHHHHHHHHHHHHHH
Confidence 3678888665 4522 46787 89832 11 1368889999999865
No 85
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=97.89 E-value=2.3e-05 Score=55.16 Aligned_cols=38 Identities=16% Similarity=0.354 Sum_probs=24.8
Q ss_pred CccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 45 GITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 45 ~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
|..++-++...+...++ +...++++|+++|++||++|+
T Consensus 285 G~~~tL~~~v~~~~~~~---------~~~~Ls~~E~~~LvaFL~sLt 322 (345)
T 3hq9_A 285 GVVWSLKEAVAVMGSAQ---------FGIKLSDDESEAIAAFLGSLT 322 (345)
T ss_dssp TCBCCHHHHHHHHSCGG---------GTCCCCHHHHHHHHHHHHTTC
T ss_pred CccccHHHHHHHccccc---------cccCCCHHHHHHHHHHHHHhC
Confidence 44555666555553221 122356999999999999986
No 86
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=97.88 E-value=7.6e-06 Score=49.86 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHhhccC
Q psy8407 75 KKPQERGDLIAYLEQASK 92 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~~ 92 (92)
.+++|..||++||.++++
T Consensus 104 cTa~EK~D~~ayL~s~~~ 121 (124)
T 1e8e_A 104 CSPSEKANFIAYLLTETK 121 (124)
T ss_dssp CCHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 459999999999999875
No 87
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=97.86 E-value=4.9e-06 Score=46.94 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHhh
Q psy8407 74 IKKPQERGDLIAYLEQ 89 (92)
Q Consensus 74 ~~~~~d~~~liayL~s 89 (92)
.++++|+++|++||.+
T Consensus 64 ~ls~~e~~~I~~YL~~ 79 (81)
T 2blf_B 64 PVDEADAKAIADYLAK 79 (81)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4569999999999976
No 88
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=97.72 E-value=4.2e-05 Score=53.76 Aligned_cols=39 Identities=8% Similarity=0.273 Sum_probs=26.1
Q ss_pred cCccccHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 44 KGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 44 ~~~~~~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
.|..++=+++.++....+. + .. ++++|+++|||||+||+
T Consensus 279 dG~~~tLeevv~~y~~~~~-------~-~~-Lt~~E~~~LvAFL~tLt 317 (341)
T 4aan_A 279 SGKVWKLKDAVKIMGSAQL-------G-IS-ITDADADKIVTFLNTLT 317 (341)
T ss_dssp TCCBCCHHHHHHHHHHHHH-------S-CC-CCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHhccCc-------C-CC-CCHHHHHHHHHHHHccC
Confidence 4566676666666543210 1 23 45999999999999986
No 89
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=97.67 E-value=6.8e-05 Score=50.95 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhc
Q psy8407 77 PQERGDLIAYLEQA 90 (92)
Q Consensus 77 ~~d~~~liayL~sl 90 (92)
++.++||++||...
T Consensus 206 ~q~a~DVvaFL~wa 219 (263)
T 2yiu_B 206 DQMATDVAAFLMWT 219 (263)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 88999999999865
No 90
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=97.67 E-value=1.7e-05 Score=53.62 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHhhccC
Q psy8407 75 KKPQERGDLIAYLEQASK 92 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~~ 92 (92)
++++|+++|++||.+|++
T Consensus 233 Ls~~ei~aLaaYl~sL~~ 250 (261)
T 1h32_A 233 VGSPEFVALELYVASRGN 250 (261)
T ss_dssp TTCHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhcC
Confidence 458999999999999863
No 91
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=97.64 E-value=1.3e-05 Score=58.47 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHHhhc
Q psy8407 71 FAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 71 ~~~~~~~~d~~~liayL~sl 90 (92)
|...++++|+++|++||.++
T Consensus 48 ~Ga~LSdEEI~aVAaYLasl 67 (494)
T 1jmx_A 48 HGLQISDDDRRTLVKYLADK 67 (494)
T ss_dssp HCCCCCHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHh
Confidence 44556799999999999876
No 92
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=97.61 E-value=0.0003 Score=50.00 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy8407 75 KKPQERGDLIAYLEQAS 91 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~ 91 (92)
++++|+++|||||+||+
T Consensus 334 Lt~~E~~dLVAFLkTLT 350 (373)
T 3sjl_A 334 LDDGRVDALVAFLETLT 350 (373)
T ss_dssp CCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 46999999999999986
No 93
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=97.32 E-value=0.0001 Score=49.89 Aligned_cols=23 Identities=9% Similarity=-0.061 Sum_probs=17.6
Q ss_pred CCC-CCCCCHHHHHHHHHHHhhcc
Q psy8407 69 MIF-AGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 69 Mp~-~~~~~~~d~~~liayL~sl~ 91 (92)
|+. ...++++|+.+|++||.+|.
T Consensus 229 M~~~~~~Ls~~ei~aLaaYv~sL~ 252 (264)
T 2c1d_A 229 TRAETFKAGSDDFKALELYVASRG 252 (264)
T ss_dssp TTBCCCCTTCHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcc
Confidence 553 23356999999999999985
No 94
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=97.30 E-value=0.00014 Score=52.89 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHhh
Q psy8407 75 KKPQERGDLIAYLEQ 89 (92)
Q Consensus 75 ~~~~d~~~liayL~s 89 (92)
++++|++.|++||..
T Consensus 51 ISdEE~~aIaaYLAa 65 (489)
T 1pby_A 51 LEPEERAAIVRHLSD 65 (489)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 459999999999954
No 95
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=97.05 E-value=0.00017 Score=43.21 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=22.9
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407 49 NKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 49 ~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl 90 (92)
+.+.+.+|++.--..+ +..--+.+|-.|+++||.++
T Consensus 77 D~akvekwf~rnc~~v------~gr~cta~EK~d~l~~l~~~ 112 (112)
T 1dw0_A 77 DSARVEKWLGRNCNSV------IGRDCTPGEKADLLAWLAAQ 112 (112)
T ss_dssp CHHHHHHHHHHHHHHH------HSSCCCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhhhhHH------HcccCCHHHHHHHHHHHHhC
Confidence 5667777776321111 11234599999999999874
No 96
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=96.76 E-value=0.00048 Score=46.98 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
.++++|+.+|.+||.++.
T Consensus 246 ~l~~~ei~ALa~Yl~~ls 263 (275)
T 3oa8_A 246 DYASEAVTALTLYLTKQA 263 (275)
T ss_dssp CTTCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHhC
Confidence 345899999999999875
No 97
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=96.73 E-value=0.0013 Score=44.86 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhc
Q psy8407 77 PQERGDLIAYLEQA 90 (92)
Q Consensus 77 ~~d~~~liayL~sl 90 (92)
+|.++||++||...
T Consensus 205 ~q~a~DVvaFL~wa 218 (269)
T 2qjy_B 205 HAMAEDVSAFLMWA 218 (269)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78899999999754
No 98
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=96.62 E-value=0.0087 Score=40.54 Aligned_cols=14 Identities=36% Similarity=0.295 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhc
Q psy8407 77 PQERGDLIAYLEQA 90 (92)
Q Consensus 77 ~~d~~~liayL~sl 90 (92)
+|.++||++||...
T Consensus 203 ~q~a~DVv~FL~wa 216 (258)
T 1zrt_D 203 DQMAQDVSAFLMWA 216 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58899999999754
No 99
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=96.48 E-value=0.00088 Score=45.22 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy8407 75 KKPQERGDLIAYLEQAS 91 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~ 91 (92)
++++|+++|++|+.+++
T Consensus 129 l~~~~~~alaaY~~sls 145 (264)
T 2c1d_A 129 VTSDNMKDMLSLISLQS 145 (264)
T ss_dssp TTSHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 34799999999999985
No 100
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=95.67 E-value=0.0022 Score=43.15 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy8407 75 KKPQERGDLIAYLEQAS 91 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~ 91 (92)
++++|+++|++|+.+++
T Consensus 126 l~~~~i~alaaY~~sls 142 (261)
T 1h32_A 126 YIGPDMTAMVALIASVS 142 (261)
T ss_dssp TTSHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 45899999999999985
No 101
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=95.62 E-value=0.025 Score=38.91 Aligned_cols=17 Identities=6% Similarity=0.083 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy8407 74 IKKPQERGDLIAYLEQA 90 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl 90 (92)
+..++++++|.+|++++
T Consensus 133 ~~~~~~~~Aia~y~~tl 149 (308)
T 1iqc_A 133 VTIDRITTAIAQFEETL 149 (308)
T ss_dssp CCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 44588999999999987
No 102
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=95.42 E-value=0.019 Score=39.92 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
+..++++++|.+|++++.
T Consensus 150 i~~~~~~~Aiaay~~sl~ 167 (328)
T 1zzh_A 150 ISFDNFALAVEAFEATLI 167 (328)
T ss_dssp CCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 444788999999999873
No 103
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=95.28 E-value=0.034 Score=38.87 Aligned_cols=18 Identities=0% Similarity=-0.093 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
+..++++++|.+|++++.
T Consensus 161 it~~~~~~Aia~y~~sL~ 178 (338)
T 2c1v_A 161 VTFDNFAAAIEQFEATLI 178 (338)
T ss_dssp SCHHHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHhc
Confidence 343788999999999874
No 104
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=95.01 E-value=0.033 Score=38.60 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
+..++++.+|.+|++++.
T Consensus 147 it~~~~~~Aia~y~~sl~ 164 (323)
T 2vhd_A 147 VSFDNMALAIEAYEATLV 164 (323)
T ss_dssp SSHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHhhcC
Confidence 343666899999999874
No 105
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=92.94 E-value=0.21 Score=34.64 Aligned_cols=15 Identities=7% Similarity=0.080 Sum_probs=11.6
Q ss_pred CHHHH-HHHHHHHhhc
Q psy8407 76 KPQER-GDLIAYLEQA 90 (92)
Q Consensus 76 ~~~d~-~~liayL~sl 90 (92)
+.+++ ++|.+|+++|
T Consensus 142 t~~~i~~Aiaaf~rtL 157 (320)
T 3o5c_A 142 DIDRLTDAIAAFEKTL 157 (320)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 35555 8999999987
No 106
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=88.74 E-value=0.64 Score=28.06 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=8.3
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
+|++||..-.
T Consensus 12 ~C~~CH~a~p 21 (125)
T 2fwt_A 12 ECSACHMAYP 21 (125)
T ss_dssp HTSSSSCCCC
T ss_pred HHHhccCCCC
Confidence 6999998863
No 107
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}
Probab=88.20 E-value=0.72 Score=28.37 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHhhc
Q psy8407 76 KPQERGDLIAYLEQA 90 (92)
Q Consensus 76 ~~~d~~~liayL~sl 90 (92)
++++...|.+||..-
T Consensus 59 d~~~~~~I~~YLq~~ 73 (139)
T 2fw5_A 59 DEASRGQIESYLVAN 73 (139)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 477777777777653
No 108
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=82.88 E-value=0.37 Score=29.01 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=8.0
Q ss_pred CCCccCcccc
Q psy8407 1 MKCAQCHTIE 10 (92)
Q Consensus 1 ~~C~~CH~~~ 10 (92)
.+|.+||..+
T Consensus 103 ~~C~~CH~~~ 112 (134)
T 3b47_A 103 VRCQSCHEQG 112 (134)
T ss_dssp TTGGGTSCTT
T ss_pred CCchhhhCCC
Confidence 4799999773
No 109
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=79.80 E-value=0.45 Score=28.53 Aligned_cols=9 Identities=33% Similarity=1.106 Sum_probs=7.1
Q ss_pred CCCccCccc
Q psy8407 1 MKCAQCHTI 9 (92)
Q Consensus 1 ~~C~~CH~~ 9 (92)
.+|.+||..
T Consensus 104 ~~Cl~CH~~ 112 (135)
T 3b42_A 104 QRCQSCHDA 112 (135)
T ss_dssp GGGGGTSCT
T ss_pred cChHhhcCC
Confidence 379999955
No 110
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=78.09 E-value=0.69 Score=27.82 Aligned_cols=24 Identities=13% Similarity=0.365 Sum_probs=18.1
Q ss_pred CCC-CC-CCCCHHHHHHHHHHHhhcc
Q psy8407 68 KMI-FA-GIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 68 ~Mp-~~-~~~~~~d~~~liayL~sl~ 91 (92)
.|| |. +.++++|+.+|.+|+.++.
T Consensus 11 ~M~~~~~~~l~~~~~~~~a~y~~~~~ 36 (147)
T 2gc4_D 11 SPLNFDDAMEEGRDTEAVKHFLETGE 36 (147)
T ss_dssp CBCCGGGSCSTTSSSHHHHHHHHHSC
T ss_pred CccccccccCCHHHHHHHHHHHHhcC
Confidence 365 55 5566899999999998764
No 111
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=71.27 E-value=1.8 Score=26.28 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=8.8
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
.|.+||+...
T Consensus 57 ~ClsCH~~~~ 66 (130)
T 1ogy_B 57 RCLECHRRQY 66 (130)
T ss_dssp GGGGTSCCCC
T ss_pred cCcccCCccc
Confidence 5999999885
No 112
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=66.47 E-value=0.76 Score=20.81 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=9.0
Q ss_pred CCCccCccccC
Q psy8407 1 MKCAQCHTIEA 11 (92)
Q Consensus 1 ~~C~~CH~~~~ 11 (92)
++|.+||-+..
T Consensus 15 R~CVaC~Ll~t 25 (31)
T 1oqe_K 15 RHCVACGLLRT 25 (31)
T ss_dssp TEEEEGGGSCC
T ss_pred hcceEEEEEeC
Confidence 58999998774
No 113
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=61.32 E-value=1 Score=27.95 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=8.2
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
.|++||..-.
T Consensus 18 eCgsCH~Ayp 27 (148)
T 3u99_A 18 ECGSCHMAYP 27 (148)
T ss_dssp HHSSSSCCCC
T ss_pred HHHhCCcccC
Confidence 5999998764
No 114
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=60.92 E-value=2.8 Score=24.47 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHh--CCCCCCCCCCCC----CCCCCCHHHHHHHHHHHhh
Q psy8407 52 TLFEYLE--NPKKYIPGTKMI----FAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 52 ~l~~~i~--~P~~~~p~~~Mp----~~~~~~~~d~~~liayL~s 89 (92)
.+..||+ .|+++.+.-..| ....++++|+..|++.|..
T Consensus 10 siv~WLRaGYP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L~~ 53 (103)
T 2kvc_A 10 SIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMR 53 (103)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCcchHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4667887 465532211111 1123569999999998853
No 115
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=59.54 E-value=3 Score=24.68 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=22.7
Q ss_pred HHHHHHHh--CCCCCCCCCCCC----CCCCCCHHHHHHHHHHHhh
Q psy8407 51 DTLFEYLE--NPKKYIPGTKMI----FAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 51 ~~l~~~i~--~P~~~~p~~~Mp----~~~~~~~~d~~~liayL~s 89 (92)
..+..||+ .|+++.+.-..| ....++++|+..|++.|..
T Consensus 11 ~siv~WLRAGYP~GVP~~Dy~PLLALL~r~Ltdeev~~Va~~L~~ 55 (112)
T 2lky_A 11 AKIAAWLNAGYPEGVPGPDRVPLLALLTRRLTNDEIKAIAEDLEK 55 (112)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCcchHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 35667888 465532211111 1233569999999998853
No 116
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=58.52 E-value=6.2 Score=23.10 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=22.7
Q ss_pred HHHHHHHh--CCCCCCCCCCCC----CCCCCCHHHHHHHHHHHhh
Q psy8407 51 DTLFEYLE--NPKKYIPGTKMI----FAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 51 ~~l~~~i~--~P~~~~p~~~Mp----~~~~~~~~d~~~liayL~s 89 (92)
..+..||+ .|+++.+.-.-| ....++++|+..|+..|..
T Consensus 14 ~siv~WLRaGYPeGVP~~Dy~PLlALL~R~Ltddev~~Va~~L~~ 58 (107)
T 3ol3_A 14 DNVLGWLHKGYPEGVPPKDYFALLALLKRSLTEDEVVRAAQAILR 58 (107)
T ss_dssp HHHHHHHHHHCTTCBCGGGHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHHHh
Confidence 35667887 465533221112 1223569999999988754
No 117
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=57.70 E-value=1.2 Score=26.89 Aligned_cols=10 Identities=40% Similarity=1.072 Sum_probs=8.2
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
.|.+||..+.
T Consensus 56 ~ClsCH~~~~ 65 (123)
T 1jni_A 56 QCLNCHSPEN 65 (123)
T ss_dssp TTHHHHSTTT
T ss_pred cCcccCCccc
Confidence 6999999664
No 118
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=55.82 E-value=5.8 Score=23.01 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407 64 IPGTKMIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 64 ~p~~~Mp~~~~~~~~d~~~liayL~sl 90 (92)
.+++.|+.....+..-..+|-+||++|
T Consensus 15 ~~~~~~~p~~~~~~~~~~dV~~WLksL 41 (101)
T 2es6_A 15 VPRGSHMPKSLTDPKLLKNIPMWLKSL 41 (101)
T ss_dssp ------CCTTTSCHHHHTCHHHHHHTT
T ss_pred CCCCCCCccccCCcccccCHHHHHHHc
Confidence 344444334455566677888888775
No 119
>2hfg_R Tumor necrosis factor receptor superfamily member; FAB fragment, TNFRSF, antibody-receptor complex, CRD, immune; 2.61A {Homo sapiens}
Probab=49.46 E-value=2.4 Score=21.30 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=8.6
Q ss_pred CCCccCccccC
Q psy8407 1 MKCAQCHTIEA 11 (92)
Q Consensus 1 ~~C~~CH~~~~ 11 (92)
++|.+||-+..
T Consensus 27 R~CVaC~Ll~t 37 (51)
T 2hfg_R 27 RHCVACGLLRT 37 (51)
T ss_dssp TEEEECEECC-
T ss_pred hcceeeEEEec
Confidence 58999998874
No 120
>2je2_A Cytochrome P460; heme P460, cross-linked heme, metal binding protein; HET: HEC; 1.8A {Nitrosomonas europaea} PDB: 2je3_A*
Probab=49.14 E-value=2.1 Score=27.46 Aligned_cols=10 Identities=50% Similarity=1.102 Sum_probs=8.2
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
.|.+||....
T Consensus 136 ~C~~CH~~~k 145 (186)
T 2je2_A 136 ECAACHKENA 145 (186)
T ss_dssp TTHHHHHHHC
T ss_pred cchhhCCccc
Confidence 5999998763
No 121
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=48.30 E-value=20 Score=21.08 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHh
Q psy8407 75 KKPQERGDLIAYLE 88 (92)
Q Consensus 75 ~~~~d~~~liayL~ 88 (92)
++++|+..|+.-|.
T Consensus 41 LtdeEV~~Va~~L~ 54 (112)
T 2m0n_A 41 LTEEQVQEVVAKLT 54 (112)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 45788887777664
No 122
>1p0t_A Tumor necrosis factor receptor superfamily member 13C; BAFF, BLys, stall, BAFF-R, BR-3, protein binding; 3.30A {Homo sapiens} PDB: 1osx_A
Probab=47.97 E-value=2.9 Score=21.83 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=9.2
Q ss_pred CCCccCccccC
Q psy8407 1 MKCAQCHTIEA 11 (92)
Q Consensus 1 ~~C~~CH~~~~ 11 (92)
+||.+||-+..
T Consensus 30 R~CVaC~Ll~t 40 (63)
T 1p0t_A 30 RHCVACGLLRT 40 (63)
T ss_dssp TEEECGGGSCC
T ss_pred hcceeeEEeec
Confidence 58999998874
No 123
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=46.77 E-value=15 Score=23.79 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy8407 70 IFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 70 p~~~~~~~~d~~~liayL~s 89 (92)
|...+-+++|+.+++.||.|
T Consensus 216 Pl~R~g~peevA~~v~fL~S 235 (256)
T 4fs3_A 216 PLKRNVDQVEVGKTAAYLLS 235 (256)
T ss_dssp TTSSCCCHHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 33345579999999999986
No 124
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=45.22 E-value=5 Score=26.71 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=7.8
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
-|+.||-...
T Consensus 20 VCANCHLa~K 29 (249)
T 1ci3_M 20 VCANCHLAAK 29 (249)
T ss_dssp GGGGTCCSBC
T ss_pred EeeccccccC
Confidence 3999997664
No 125
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=45.08 E-value=6.3 Score=24.15 Aligned_cols=31 Identities=10% Similarity=0.240 Sum_probs=23.2
Q ss_pred cHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy8407 49 NKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIA 85 (92)
Q Consensus 49 ~~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~lia 85 (92)
.+++..+|..||.++. --.+++ ++|+++|.+
T Consensus 46 ~~~~RerF~aDpeA~l-----~~~gLT-eEEr~AV~~ 76 (139)
T 1b4u_A 46 KAENRERFKADESAYL-----DEWNLT-PAAKAAVLA 76 (139)
T ss_dssp SHHHHHHHHHCHHHHH-----HTTTCC-HHHHHHHHH
T ss_pred CHHHHHHHHhCHHHHH-----HHcCCC-HHHHHHHHc
Confidence 5888889999997643 334565 999998864
No 126
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=45.05 E-value=5 Score=26.73 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=7.8
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
-|+.||-...
T Consensus 20 VCANCHLA~K 29 (252)
T 1hcz_A 20 VCANCHLASK 29 (252)
T ss_dssp GGGGTCCSBC
T ss_pred EeeccccccC
Confidence 3999997664
No 127
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=45.00 E-value=5.1 Score=26.71 Aligned_cols=10 Identities=40% Similarity=0.986 Sum_probs=7.8
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
-|+.||-...
T Consensus 20 VCANCHLA~K 29 (251)
T 1e2w_A 20 VCANCHLAQK 29 (251)
T ss_dssp GGGGTCCSBC
T ss_pred EeeccccccC
Confidence 3999997664
No 128
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=44.60 E-value=15 Score=24.48 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy8407 70 IFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 70 p~~~~~~~~d~~~liayL~s 89 (92)
|...+-+++|+.+++.||.|
T Consensus 234 PlgR~g~peeiA~~v~FLaS 253 (273)
T 4fgs_A 234 PMGRVGRAEEVAAAALFLAS 253 (273)
T ss_dssp TTSSCBCHHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 44445579999999999986
No 129
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=42.04 E-value=19 Score=23.64 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=16.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhh
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~s 89 (92)
.|...+-+++|+.+++.||.|
T Consensus 220 ~PlgR~g~peevA~~v~fLaS 240 (261)
T 4h15_A 220 IPLGRPAKPEEVANLIAFLAS 240 (261)
T ss_dssp CTTSSCBCHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHhC
Confidence 454556679999999999986
No 130
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=41.99 E-value=22 Score=23.31 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy8407 70 IFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 70 p~~~~~~~~d~~~liayL~s 89 (92)
|...+-+++|+.+++.||.|
T Consensus 195 Pl~R~g~pediA~~v~fL~s 214 (247)
T 3ged_A 195 PAGKVGTPKDISNMVLFLCQ 214 (247)
T ss_dssp TTSSCBCHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHh
Confidence 33445579999999999986
No 131
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=41.63 E-value=6.1 Score=26.80 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.3
Q ss_pred CccCccccC
Q psy8407 3 CAQCHTIEA 11 (92)
Q Consensus 3 C~~CH~~~~ 11 (92)
|+.||-...
T Consensus 22 CANCHLa~K 30 (289)
T 1vf5_C 22 CANCHLAAK 30 (289)
T ss_dssp GGGTCCCBC
T ss_pred eeccccccC
Confidence 888886553
No 132
>3ml1_B NAPB, diheme cytochrome C NAPB; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_B*
Probab=40.11 E-value=14 Score=22.44 Aligned_cols=10 Identities=50% Similarity=1.016 Sum_probs=7.3
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
+|..||....
T Consensus 98 fCtQCHVPQa 107 (135)
T 3ml1_B 98 FCTQCHVPQA 107 (135)
T ss_dssp SGGGTCCBCB
T ss_pred eeccccCccc
Confidence 5888887764
No 133
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=39.50 E-value=19 Score=23.61 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy8407 70 IFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 70 p~~~~~~~~d~~~liayL~s 89 (92)
|...+-+++|+.+++.||.|
T Consensus 203 PlgR~g~peeiA~~v~fLaS 222 (242)
T 4b79_A 203 PLARWGEAPEVASAAAFLCG 222 (242)
T ss_dssp TTCSCBCHHHHHHHHHHHTS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 33445579999999999986
No 134
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=37.53 E-value=24 Score=20.92 Aligned_cols=21 Identities=5% Similarity=0.286 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHHhhccC
Q psy8407 71 FAGIKKPQERGDLIAYLEQASK 92 (92)
Q Consensus 71 ~~~~~~~~d~~~liayL~sl~~ 92 (92)
..++ ++++++.|+++|..+++
T Consensus 109 ~~~L-s~e~~~~l~~ii~~l~~ 129 (135)
T 3r1f_A 109 AHGL-PSAAQQKVLDRIDELRR 129 (135)
T ss_dssp HTSC-CHHHHHHHHHHHHHHC-
T ss_pred HcCC-CHHHHHHHHHHHHHHHH
Confidence 3455 59999999999988764
No 135
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=37.50 E-value=19 Score=23.77 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=15.9
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy8407 70 IFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 70 p~~~~~~~~d~~~liayL~s 89 (92)
|...+-+++|+.+++.||.|
T Consensus 208 PlgR~g~peeiA~~v~fLaS 227 (247)
T 4hp8_A 208 PAGRWGHSEDIAGAAVFLSS 227 (247)
T ss_dssp TTSSCBCTHHHHHHHHHHTS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 44445568999999999986
No 136
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.09 E-value=5.5 Score=23.76 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 65 PGTKMIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 65 p~~~Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
+++.||...+.+..-+.+|.+||++|.
T Consensus 34 ~~s~~~p~~~~d~~~~~dV~~WL~sLr 60 (119)
T 2b6g_A 34 SNSSMNPKSLTDPKLLKNIPMWLKSLR 60 (119)
T ss_dssp -----CHHHHSCHHHHHCHHHHHHHHT
T ss_pred CCCCCCcccccCcccccCHHHHHHHCC
Confidence 566786555566777889999998763
No 137
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=35.69 E-value=72 Score=19.12 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=17.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~sl 90 (92)
+.|-.-++++||.+=|+||.+.
T Consensus 15 fSyLP~lt~eqI~kQI~Yll~q 36 (128)
T 1wdd_S 15 LSYLPPLTVEDLLKQIEYLLRS 36 (128)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHC
Confidence 5665556799999999999763
No 138
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=35.02 E-value=22 Score=21.78 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHhh
Q psy8407 74 IKKPQERGDLIAYLEQ 89 (92)
Q Consensus 74 ~~~~~d~~~liayL~s 89 (92)
..+.+|+++|++|-.|
T Consensus 79 ~fT~~El~~l~~FY~s 94 (147)
T 3oao_A 79 NFTESELKDLNAFYQS 94 (147)
T ss_dssp HSCHHHHHHHHHHHHS
T ss_pred HCCHHHHHHHHHHHCC
Confidence 3469999999999876
No 139
>2czs_A DHC2, cytochrome C, putative; diheme, C-type cytochrome, electron transport; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=34.51 E-value=5.7 Score=21.92 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=7.2
Q ss_pred CCCccCcccc
Q psy8407 1 MKCAQCHTIE 10 (92)
Q Consensus 1 ~~C~~CH~~~ 10 (92)
+.|.+||-..
T Consensus 35 ~~C~~CH~~~ 44 (80)
T 2czs_A 35 RQCVECHHEK 44 (80)
T ss_dssp HHHTTTSCSS
T ss_pred hcchhhcccC
Confidence 3699999543
No 140
>3cao_A Cytochrome C3; tetraheme, oxidised form, electron transport; HET: HEM; 1.60A {Desulfovibrio africanus} SCOP: a.138.1.1 PDB: 3car_A*
Probab=34.51 E-value=11 Score=21.30 Aligned_cols=10 Identities=40% Similarity=1.225 Sum_probs=7.9
Q ss_pred CCCccCcccc
Q psy8407 1 MKCAQCHTIE 10 (92)
Q Consensus 1 ~~C~~CH~~~ 10 (92)
+.|..||+..
T Consensus 57 ~~C~~CH~~~ 66 (103)
T 3cao_A 57 TPCSDCHALE 66 (103)
T ss_dssp SCGGGTCCSS
T ss_pred CchhhhcCcc
Confidence 3699999875
No 141
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Probab=33.17 E-value=25 Score=21.63 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=17.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcc
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~sl~ 91 (92)
.+|.+-.+|.++.+|+.||..+.
T Consensus 148 ~~~~~~~~D~eL~~l~~~L~~l~ 170 (181)
T 2ght_A 148 ASWFDNMSDTELHDLLPFFEQLS 170 (181)
T ss_dssp CCCSSCTTCCHHHHHHHHHHHHT
T ss_pred ccccCCCChHHHHHHHHHHHHhC
Confidence 34655556889999999999875
No 142
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.11 E-value=32 Score=22.60 Aligned_cols=17 Identities=18% Similarity=0.591 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8407 73 GIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 73 ~~~~~~d~~~liayL~s 89 (92)
.+-+++|+.+++.||.|
T Consensus 218 R~g~pediA~~v~fLaS 234 (254)
T 4fn4_A 218 RLAEPEDIANVIVFLAS 234 (254)
T ss_dssp CCBCHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhC
Confidence 34569999999999986
No 143
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A {Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A* 1ft6_A*
Probab=32.07 E-value=13 Score=24.00 Aligned_cols=10 Identities=30% Similarity=0.723 Sum_probs=8.2
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
.|..||+...
T Consensus 59 ~C~~CH~~~~ 68 (211)
T 1ft5_A 59 DCVGCHVDGF 68 (211)
T ss_dssp TTGGGSBSST
T ss_pred cccccCCCcc
Confidence 6999998853
No 144
>2k3v_A Tetraheme cytochrome C-type; multihaem cytochromes, redox proteins, electron transport, iron, metal-binding, periplasm, transport; HET: HEM; NMR {Shewanella frigidimarina}
Probab=32.06 E-value=14 Score=20.12 Aligned_cols=10 Identities=40% Similarity=0.906 Sum_probs=7.7
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
.|.+||+...
T Consensus 34 ~C~~CH~~~~ 43 (86)
T 2k3v_A 34 QCQSCHGSLA 43 (86)
T ss_dssp HTSSSSCCGG
T ss_pred hHhHhccCHH
Confidence 4999998763
No 145
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=31.78 E-value=5 Score=26.66 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=7.7
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
-|+.||-...
T Consensus 20 VCANCHLa~K 29 (249)
T 2jxm_B 20 VCANCHLAKK 29 (249)
T ss_dssp THHHHCCSBC
T ss_pred EeeccccccC
Confidence 3999997664
No 146
>1gyo_A Cytochrome C3, A dimeric class III C-type cytochrome; electron transport, DI-tetraheme, AB initio, electron transfer; HET: HEC; 1.2A {Desulfovibrio gigas} SCOP: a.138.1.1
Probab=31.75 E-value=13 Score=21.34 Aligned_cols=11 Identities=45% Similarity=0.915 Sum_probs=8.3
Q ss_pred CCCccCccccC
Q psy8407 1 MKCAQCHTIEA 11 (92)
Q Consensus 1 ~~C~~CH~~~~ 11 (92)
+.|.+||+...
T Consensus 50 ~~C~~CH~~~~ 60 (109)
T 1gyo_A 50 QKCADCHIDRD 60 (109)
T ss_dssp CCGGGTCCCCS
T ss_pred cchhhhcCCcc
Confidence 36999998653
No 147
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized tetraheme cytochrome C, electron transport; HET: HEM; 0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB: 1m1p_A* 1m1r_A*
Probab=31.06 E-value=13 Score=20.31 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=8.2
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
.|..||..-.
T Consensus 57 ~C~~CH~pH~ 66 (91)
T 1m1q_A 57 VCADCHAVHD 66 (91)
T ss_dssp CGGGTCCTTT
T ss_pred cHhHhchhhh
Confidence 6999998864
No 148
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=30.91 E-value=7.4 Score=21.96 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=13.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407 67 TKMIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 67 ~~Mp~~~~~~~~d~~~liayL~sl 90 (92)
+.||...+.+..-+.+|-+||++|
T Consensus 5 s~~~p~~~~d~~~~~~V~~WL~sL 28 (88)
T 2d3d_A 5 SSMNPKSLTDPKLLKNIPMWLKSL 28 (88)
T ss_dssp -CCCHHHHTCHHHHTCHHHHHHHT
T ss_pred CCCCcccccCccccccHHHHHHHc
Confidence 345444444455566777777765
No 149
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=30.19 E-value=26 Score=19.17 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy8407 75 KKPQERGDLIAYLEQAS 91 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~ 91 (92)
+++++++.|..||..++
T Consensus 90 l~~e~~~~i~~~i~~l~ 106 (111)
T 1b0n_A 90 VSKKQFREFLDYQKWRK 106 (111)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45899888888887663
No 150
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=29.86 E-value=25 Score=17.38 Aligned_cols=11 Identities=18% Similarity=0.800 Sum_probs=8.6
Q ss_pred CCCccCccccC
Q psy8407 1 MKCAQCHTIEA 11 (92)
Q Consensus 1 ~~C~~CH~~~~ 11 (92)
+.|..|+++..
T Consensus 28 r~C~rCw~LRk 38 (46)
T 2c6a_A 28 SHCNRCWALRE 38 (46)
T ss_dssp SSCTTTCCCCS
T ss_pred chhhHHHhhcc
Confidence 46888998874
No 151
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=29.25 E-value=41 Score=21.99 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8407 73 GIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 73 ~~~~~~d~~~liayL~s 89 (92)
.+-+++|+.+++.||.|
T Consensus 217 R~g~peeiA~~v~fLaS 233 (258)
T 4gkb_A 217 RFTTPDEIADTAVFLLS 233 (258)
T ss_dssp SCBCHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhC
Confidence 35569999999999986
No 152
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=28.98 E-value=32 Score=20.32 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHhhcc
Q psy8407 74 IKKPQERGDLIAYLEQAS 91 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl~ 91 (92)
..+-+++.+||.||.+.|
T Consensus 167 ~~s~e~~~~~i~~Ll~kk 184 (184)
T 4dvc_A 167 AKSLDEYFDLVNYLLTLK 184 (184)
T ss_dssp CSSHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHhCc
Confidence 345799999999998864
No 153
>2zdj_A Hypothetical protein TTMA177; alpha and beta proteins (A+B), cystatin-like, NPPSFA; 2.20A {Thermus thermophilus phage tma}
Probab=28.01 E-value=37 Score=17.93 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHhhc
Q psy8407 74 IKKPQERGDLIAYLEQA 90 (92)
Q Consensus 74 ~~~~~d~~~liayL~sl 90 (92)
+.+.+++++|+.|+-+.
T Consensus 17 ~qdsq~VK~iLeyIG~~ 33 (69)
T 2zdj_A 17 IQDSQEVKAILEYIGSE 33 (69)
T ss_dssp ECCHHHHHHHHHHHTCC
T ss_pred EeCHHHHHHHHHHhccc
Confidence 45689999999999764
No 154
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=27.33 E-value=51 Score=22.07 Aligned_cols=13 Identities=15% Similarity=0.759 Sum_probs=11.0
Q ss_pred cccHHHHHHHHhC
Q psy8407 47 TWNKDTLFEYLEN 59 (92)
Q Consensus 47 ~~~~~~l~~~i~~ 59 (92)
.|+++++..||+.
T Consensus 236 ~W~~~~Vl~fLk~ 248 (261)
T 3llk_A 236 VWDVEATLNFLKA 248 (261)
T ss_dssp SBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5899999999883
No 155
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=26.88 E-value=44 Score=18.76 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407 50 KDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 50 ~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl 90 (92)
.+-|.+|+..- .+ | .++|+..|..||..+
T Consensus 15 r~~l~~Wv~~~----~~---P-----~~~DV~~l~~yL~~l 43 (97)
T 4fjo_A 15 KTLLKEWITTI----SD---P-----MEEDILQVVRYCTDL 43 (97)
T ss_dssp HHHHHHHHHHC----SS---C-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CC---C-----CHHHHHHHHHHHHHH
Confidence 45677888631 11 2 389999999999865
No 156
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.56 E-value=32 Score=16.54 Aligned_cols=9 Identities=78% Similarity=1.187 Sum_probs=6.8
Q ss_pred HHHHHHHHh
Q psy8407 80 RGDLIAYLE 88 (92)
Q Consensus 80 ~~~liayL~ 88 (92)
-.|||+||.
T Consensus 29 kkdliayle 37 (49)
T 3he5_A 29 KKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 468889885
No 157
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=26.26 E-value=1e+02 Score=17.90 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=16.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhh
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~s 89 (92)
+.|-.-++++||..=|.||.+
T Consensus 16 fSyLP~lt~eqI~kQV~Yll~ 36 (110)
T 1svd_M 16 FSYLPPMNAERIRAQIKYAIA 36 (110)
T ss_dssp TTTSCCCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 566555669999999999975
No 158
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.14 E-value=51 Score=18.35 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHhhcc
Q psy8407 75 KKPQERGDLIAYLEQAS 91 (92)
Q Consensus 75 ~~~~d~~~liayL~sl~ 91 (92)
++++|++.|..+|..+.
T Consensus 108 ls~ee~~~l~~~L~~~~ 124 (126)
T 1sd4_A 108 LNNKEIEELRDILNDIS 124 (126)
T ss_dssp SCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 35999999999998765
No 159
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=25.44 E-value=46 Score=19.71 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407 50 KDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 50 ~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl 90 (92)
.+-|.+|+..- .+ | .++|+..|..||..+
T Consensus 42 K~lL~~Wv~s~----~~---P-----~~~DV~~l~~yL~~l 70 (124)
T 3vu7_H 42 KTLLREWITTI----SD---P-----MEEDILQVVKYCTDL 70 (124)
T ss_dssp HHHHHHHHHHH----CS---C-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CC---C-----CHHHHHHHHHHHHHH
Confidence 45677788631 11 2 389999999999865
No 160
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=25.30 E-value=1.3e+02 Score=20.56 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhc
Q psy8407 50 KDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 50 ~~~l~~~i~~P~~~~p~~~Mp~~~~~~~~d~~~liayL~sl 90 (92)
++.|...|.....+.|..-|| ++-+..|+.||..+
T Consensus 6 ~~~~~~~i~~g~~ie~~d~mP------~~Yr~~L~~ll~~l 40 (311)
T 3pvt_A 6 EERFEQRIAQETAIEPQDWMP------DAYRKTLIRQIGQH 40 (311)
T ss_dssp HHHHHHHHHTTCCBCTTSCCC------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCCC------HHHHHHHHHHHHHH
Confidence 556888999877776665566 77788888888654
No 161
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=25.19 E-value=7.8 Score=26.33 Aligned_cols=9 Identities=44% Similarity=1.158 Sum_probs=6.7
Q ss_pred CccCccccC
Q psy8407 3 CAQCHTIEA 11 (92)
Q Consensus 3 C~~CH~~~~ 11 (92)
|+.||-...
T Consensus 21 CANCHLA~K 29 (292)
T 1q90_A 21 CANCHLAQK 29 (292)
T ss_dssp HHHHCCCBC
T ss_pred eeccccccC
Confidence 888886654
No 162
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.87 E-value=23 Score=23.33 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHhh
Q psy8407 70 IFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 70 p~~~~~~~~d~~~liayL~s 89 (92)
|...+-+++|+.+++.||.|
T Consensus 215 Pl~R~g~pediA~~v~fL~S 234 (255)
T 4g81_D 215 PSQRWGRPEELIGTAIFLSS 234 (255)
T ss_dssp TTCSCBCGGGGHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHhC
Confidence 33445568999999999986
No 163
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=24.83 E-value=68 Score=15.43 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=9.5
Q ss_pred CCCCHHHHHHHHHHHhhc
Q psy8407 73 GIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 73 ~~~~~~d~~~liayL~sl 90 (92)
..+...-.++.|.||..-
T Consensus 12 k~Ld~~~akdFv~WL~~~ 29 (42)
T 2b4n_A 12 IAMDKIHQQDFVNWLLAQ 29 (42)
T ss_dssp TTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344444555666666543
No 164
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=24.78 E-value=56 Score=14.40 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhccC
Q psy8407 77 PQERGDLIAYLEQASK 92 (92)
Q Consensus 77 ~~d~~~liayL~sl~~ 92 (92)
.+-+-||+.|++|-|+
T Consensus 7 nqmltdilsfmksgkr 22 (33)
T 3c0t_B 7 NQMLTDILSFMKSGKR 22 (33)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcchH
Confidence 3556789999988654
No 165
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=24.58 E-value=16 Score=28.39 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.4
Q ss_pred CCCccCccccCCCCCCCCCCccC
Q psy8407 1 MKCAQCHTIEAGGAHKVGPNLHG 23 (92)
Q Consensus 1 ~~C~~CH~~~~~~~~~~GP~L~~ 23 (92)
.+|..||++-|- ++..|||++.
T Consensus 79 ~g~m~~GSi~Gh-GaY~aPD~TA 100 (800)
T 3ayf_A 79 YGLMDYGTVLGH-GSYMGPDYTA 100 (800)
T ss_dssp TTGGGTSEETTE-ECSSSCBHHH
T ss_pred cCCcccCccccC-CcccCcchHH
Confidence 479999999975 5799999874
No 166
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...
Probab=24.51 E-value=59 Score=21.59 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=16.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~s 89 (92)
+|...+.+++|+.+.+.||.+
T Consensus 285 ~p~~r~~~peevA~~v~fL~s 305 (329)
T 3lt0_A 285 APLRQKLLSTDIGSVASFLLS 305 (329)
T ss_dssp SSSCSCCCHHHHHHHHHHHHS
T ss_pred CcccCcCCHHHHHHHHHHHhC
Confidence 344455679999999999986
No 167
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=24.32 E-value=79 Score=18.63 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=15.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~s 89 (92)
+.|-.-++++||.+=|+||.+
T Consensus 13 fSyLP~Lt~eqI~kQV~yll~ 33 (118)
T 3zxw_B 13 FSYLPPLSDAQIARQIQYAID 33 (118)
T ss_dssp -CCSCCCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHh
Confidence 455444569999999999975
No 168
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=24.27 E-value=1.3e+02 Score=18.33 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=16.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~s 89 (92)
+.|-.-++++||..=|.||.+
T Consensus 15 fSyLP~lt~eqI~kQI~YlL~ 35 (140)
T 1gk8_I 15 FSYLPPLTDEQIAAQVDYIVA 35 (140)
T ss_dssp TTTSSCCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHH
Confidence 555555669999999999975
No 169
>1xv3_A Penaeidin-4D, PEN-4D; antimicrobial peptide, antifungal peptide, cysteine-rich, disulfide bond, oxidative folding, proline- rich, shrimp, antibiotic; NMR {Synthetic}
Probab=23.82 E-value=27 Score=17.21 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=6.7
Q ss_pred CccCcccc
Q psy8407 3 CAQCHTIE 10 (92)
Q Consensus 3 C~~CH~~~ 10 (92)
|.+||.+.
T Consensus 23 C~sC~~is 30 (47)
T 1xv3_A 23 CDVCYGIP 30 (47)
T ss_dssp TTCTTTSC
T ss_pred CccccccC
Confidence 88999876
No 170
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=23.56 E-value=23 Score=25.76 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=5.1
Q ss_pred CCccCcccc
Q psy8407 2 KCAQCHTIE 10 (92)
Q Consensus 2 ~C~~CH~~~ 10 (92)
.|.+||...
T Consensus 15 ~C~~CH~~~ 23 (572)
T 1d4d_A 15 GCDSCHVSD 23 (572)
T ss_dssp CSTTTSSSS
T ss_pred ChhhhCCCC
Confidence 366666553
No 171
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=23.38 E-value=24 Score=26.87 Aligned_cols=10 Identities=50% Similarity=1.022 Sum_probs=8.1
Q ss_pred CCCccCcccc
Q psy8407 1 MKCAQCHTIE 10 (92)
Q Consensus 1 ~~C~~CH~~~ 10 (92)
++|.+||.-+
T Consensus 544 ~nC~~CH~d~ 553 (669)
T 3pmq_A 544 GNCAQCHIND 553 (669)
T ss_dssp TCTTTTBCBS
T ss_pred ccchhhcCCC
Confidence 4799999865
No 172
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus} SCOP: a.204.1.0
Probab=23.35 E-value=50 Score=19.40 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhc
Q psy8407 77 PQERGDLIAYLEQA 90 (92)
Q Consensus 77 ~~d~~~liayL~sl 90 (92)
.+|+.||+-||..+
T Consensus 74 ~eELADVL~Yl~~L 87 (118)
T 3obc_A 74 EEEIADVLIYLLFL 87 (118)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999999865
No 173
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=23.15 E-value=8.9 Score=20.35 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHhhc
Q psy8407 75 KKPQERGDLIAYLEQA 90 (92)
Q Consensus 75 ~~~~d~~~liayL~sl 90 (92)
..+++..++++||.+.
T Consensus 10 ~~~r~aqaf~dyL~~~ 25 (70)
T 2gqc_A 10 PLSVDLAGFVGLLRRL 25 (70)
T ss_dssp CTTTTGGGHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHC
Confidence 3467778888888875
No 174
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=22.75 E-value=22 Score=25.70 Aligned_cols=7 Identities=43% Similarity=1.493 Sum_probs=4.4
Q ss_pred CccCccc
Q psy8407 3 CAQCHTI 9 (92)
Q Consensus 3 C~~CH~~ 9 (92)
|..||+.
T Consensus 82 C~~CH~~ 88 (571)
T 1y0p_A 82 CDSCHSF 88 (571)
T ss_dssp GGGTCCC
T ss_pred ccccChh
Confidence 6666654
No 175
>3h4n_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.35A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=22.40 E-value=22 Score=18.79 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=7.0
Q ss_pred CCccCcccc
Q psy8407 2 KCAQCHTIE 10 (92)
Q Consensus 2 ~C~~CH~~~ 10 (92)
.|..||.-.
T Consensus 27 ~C~~CH~~~ 35 (72)
T 3h4n_A 27 ECKACHETE 35 (72)
T ss_dssp GGGGTSSST
T ss_pred ChhhhcCCC
Confidence 599999743
No 176
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=22.39 E-value=23 Score=25.64 Aligned_cols=8 Identities=38% Similarity=1.481 Sum_probs=4.0
Q ss_pred CccCcccc
Q psy8407 3 CAQCHTIE 10 (92)
Q Consensus 3 C~~CH~~~ 10 (92)
|..||+..
T Consensus 79 c~~ch~~~ 86 (566)
T 1qo8_A 79 CNECHSFD 86 (566)
T ss_dssp GGGTCCCC
T ss_pred hhhhcCCC
Confidence 55555543
No 177
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=21.98 E-value=38 Score=15.31 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=6.9
Q ss_pred CCccCcccc
Q psy8407 2 KCAQCHTIE 10 (92)
Q Consensus 2 ~C~~CH~~~ 10 (92)
.|.+|++..
T Consensus 23 kC~aC~tpk 31 (33)
T 3gj3_B 23 KCVACETPK 31 (33)
T ss_dssp BCTTTCCBC
T ss_pred EEcccCCCC
Confidence 588888765
No 178
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=21.93 E-value=1e+02 Score=18.65 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=16.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~sl 90 (92)
+.|-.-++++||..=|.||.+.
T Consensus 8 fSyLP~ltdeqI~kQI~Yll~q 29 (138)
T 1bwv_S 8 FSFLPDLTDEQIKKQIDYMISK 29 (138)
T ss_dssp TTTSCCCCHHHHHHHHHHHHHT
T ss_pred eccCCCCCHHHHHHHHHHHHHC
Confidence 5554445699999999999763
No 179
>2j7a_A Cytochrome C nitrite reductase NRFA; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_A*
Probab=21.78 E-value=28 Score=25.51 Aligned_cols=9 Identities=44% Similarity=0.988 Sum_probs=6.9
Q ss_pred CCCccCccc
Q psy8407 1 MKCAQCHTI 9 (92)
Q Consensus 1 ~~C~~CH~~ 9 (92)
+.|..||.-
T Consensus 323 ~~C~~CH~~ 331 (500)
T 2j7a_A 323 RACRQCHSD 331 (500)
T ss_dssp TTTTTTTTT
T ss_pred hhHHhhccC
Confidence 369999975
No 180
>2rdz_A Cytochrome C-552; decaheme, reductase, calcium, electron transport, iron, metal-binding, oxidoreductase, periplasm, transport; HET: HEC; 1.74A {Escherichia coli} SCOP: a.138.1.3 PDB: 1gu6_A* 3l1t_A* 3tor_A* 2rf7_A*
Probab=21.63 E-value=20 Score=25.89 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.5
Q ss_pred CCccCcccc
Q psy8407 2 KCAQCHTIE 10 (92)
Q Consensus 2 ~C~~CH~~~ 10 (92)
.|+.||.-.
T Consensus 182 vCaqCH~~y 190 (452)
T 2rdz_A 182 VCGQCHVEY 190 (452)
T ss_dssp HHTTTSSCC
T ss_pred hhhhccccc
Confidence 499999875
No 181
>3h33_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 2.25A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=21.31 E-value=30 Score=18.64 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=6.9
Q ss_pred CCccCcccc
Q psy8407 2 KCAQCHTIE 10 (92)
Q Consensus 2 ~C~~CH~~~ 10 (92)
.|..||.-.
T Consensus 26 ~C~~CH~~~ 34 (75)
T 3h33_A 26 ECRGCHEKG 34 (75)
T ss_dssp CSTTTCTTS
T ss_pred ChhhhcCCC
Confidence 599999643
No 182
>3ubr_A Cytochrome C-552; DECA-heme, electron transfer, redox, CYMA, oxidoreductase; HET: HEC; 2.59A {Shewanella oneidensis}
Probab=21.21 E-value=26 Score=25.34 Aligned_cols=9 Identities=56% Similarity=0.999 Sum_probs=7.1
Q ss_pred CCccCcccc
Q psy8407 2 KCAQCHTIE 10 (92)
Q Consensus 2 ~C~~CH~~~ 10 (92)
-|+.||.--
T Consensus 167 VCaQCHveY 175 (439)
T 3ubr_A 167 VCAQCHVEY 175 (439)
T ss_dssp TTTTTSSCC
T ss_pred HHHhcccee
Confidence 499999754
No 183
>3ouq_A Cytochrome C family protein; multiheme cytochrome C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.60A {Geobacter sulfurreducens}
Probab=21.05 E-value=24 Score=21.61 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=6.3
Q ss_pred CCccCcccc
Q psy8407 2 KCAQCHTIE 10 (92)
Q Consensus 2 ~C~~CH~~~ 10 (92)
.|.+||...
T Consensus 57 ~C~~CH~~~ 65 (161)
T 3ouq_A 57 SCGACHTGM 65 (161)
T ss_dssp GGGGTBTTT
T ss_pred chhhhcCCc
Confidence 488888654
No 184
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=20.95 E-value=1e+02 Score=18.70 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=16.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhc
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQA 90 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~sl 90 (92)
+.|-.-++++||..=|.||.+.
T Consensus 8 fSyLP~ltdeqI~kQI~YlL~q 29 (139)
T 1bxn_I 8 FSFLPELTDEQITKQLEYCLNQ 29 (139)
T ss_dssp TTTSSCCCHHHHHHHHHHHHHH
T ss_pred eccCCCCCHHHHHHHHHHHHHC
Confidence 4554445699999999999763
No 185
>2ozy_A Cytochrome C-type protein NRFB; pentaheme C-type cytochrome, electron transport; HET: HEC; 1.74A {Escherichia coli} PDB: 2p0b_A*
Probab=20.86 E-value=27 Score=21.08 Aligned_cols=10 Identities=40% Similarity=1.205 Sum_probs=8.1
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
.|..||..-.
T Consensus 112 ~C~~CH~pH~ 121 (163)
T 2ozy_A 112 ACASCHSLHP 121 (163)
T ss_dssp CGGGTCCCSS
T ss_pred chhHhccCcc
Confidence 6999999763
No 186
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=20.74 E-value=74 Score=20.49 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy8407 73 GIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 73 ~~~~~~d~~~liayL~s 89 (92)
.+.+++|+.+.+.||.+
T Consensus 236 r~~~pedvA~~v~fL~s 252 (271)
T 3v2g_A 236 SYGEPQDIAGLVAWLAG 252 (271)
T ss_dssp SCBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 35579999999999986
No 187
>1sp3_A Cytochrome C, putative; octaheme, oxidoreductase; HET: HEM; 2.20A {Shewanella oneidensis} SCOP: a.138.1.3
Probab=20.52 E-value=31 Score=24.64 Aligned_cols=7 Identities=43% Similarity=1.360 Sum_probs=3.9
Q ss_pred CCccCcc
Q psy8407 2 KCAQCHT 8 (92)
Q Consensus 2 ~C~~CH~ 8 (92)
.|.+||.
T Consensus 208 ~C~~CH~ 214 (443)
T 1sp3_A 208 GCENCHD 214 (443)
T ss_dssp CSTTTSC
T ss_pred cchhhCC
Confidence 4555555
No 188
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.41 E-value=78 Score=20.14 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=16.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhh
Q psy8407 69 MIFAGIKKPQERGDLIAYLEQ 89 (92)
Q Consensus 69 Mp~~~~~~~~d~~~liayL~s 89 (92)
.|...+.+++|+.+.+.||.+
T Consensus 224 ~p~~r~~~pedvA~~v~fL~s 244 (265)
T 3lf2_A 224 IPLGRLGKPIEAARAILFLAS 244 (265)
T ss_dssp CTTCSCBCHHHHHHHHHHHHS
T ss_pred CCcCCCcCHHHHHHHHHHHhC
Confidence 344455679999999999986
No 189
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=20.24 E-value=26 Score=21.59 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=7.3
Q ss_pred CCCccCcccc
Q psy8407 1 MKCAQCHTIE 10 (92)
Q Consensus 1 ~~C~~CH~~~ 10 (92)
+.|.+||.-.
T Consensus 56 ~~C~~CH~g~ 65 (158)
T 3oue_A 56 KSCGACHNGK 65 (158)
T ss_dssp CGGGGTBSSS
T ss_pred CchhhhcCCc
Confidence 3599999643
No 190
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=20.17 E-value=29 Score=18.64 Aligned_cols=10 Identities=30% Similarity=0.962 Sum_probs=7.8
Q ss_pred CCccCccccC
Q psy8407 2 KCAQCHTIEA 11 (92)
Q Consensus 2 ~C~~CH~~~~ 11 (92)
-|..||-.-.
T Consensus 35 i~S~~HPFyT 44 (71)
T 3v2d_4 35 VCSKCHPFYT 44 (71)
T ss_dssp CCTTTSSSSS
T ss_pred ecCCCCCCCC
Confidence 4899998764
No 191
>3h34_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter sulfurreducen electron transport; HET: HEM; 1.60A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=20.12 E-value=28 Score=18.40 Aligned_cols=8 Identities=38% Similarity=1.148 Sum_probs=6.6
Q ss_pred CCccCccc
Q psy8407 2 KCAQCHTI 9 (92)
Q Consensus 2 ~C~~CH~~ 9 (92)
.|..||.-
T Consensus 26 ~C~~CH~~ 33 (70)
T 3h34_A 26 ECRSCHEK 33 (70)
T ss_dssp CGGGTSCS
T ss_pred ChhhccCC
Confidence 59999974
No 192
>1ehj_A Cytochrome C7; multi-heme, electron transport; HET: HEC; NMR {Desulfuromonas acetoxidans} SCOP: a.138.1.1 PDB: 1f22_A* 1hh5_A* 1lm2_A* 1new_A* 2new_A* 1kwj_A* 1l3o_A*
Probab=20.12 E-value=30 Score=18.09 Aligned_cols=8 Identities=38% Similarity=0.991 Sum_probs=6.8
Q ss_pred CccCcccc
Q psy8407 3 CAQCHTIE 10 (92)
Q Consensus 3 C~~CH~~~ 10 (92)
|..||.-.
T Consensus 26 C~~CH~~~ 33 (68)
T 1ehj_A 26 CDACHEGT 33 (68)
T ss_dssp STTTCSSC
T ss_pred ccccCCCC
Confidence 99999865
Done!