RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8407
(92 letters)
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET:
HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB:
1cry_A* 1io3_A*
Length = 107
Score = 177 bits (452), Expect = 4e-60
Identities = 46/91 (50%), Positives = 63/91 (69%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C CH+I G +KVGP L+GL GR +G GF+Y++AN GITW ++ EY+ +PK
Sbjct: 12 QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPK 71
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
IPGTKMIFAG+K Q+ DLIAY++Q +
Sbjct: 72 AKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET:
HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB:
1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A*
2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A*
1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Length = 103
Score = 176 bits (449), Expect = 9e-60
Identities = 70/91 (76%), Positives = 76/91 (83%)
Query: 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN KGI WN DTL EYLENP
Sbjct: 12 QKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENP 71
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KKYIPGTKMIFAGIKK ER DL+AYL+ A+
Sbjct: 72 KKYIPGTKMIFAGIKKKGERQDLVAYLKSAT 102
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A
{Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W*
3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B*
2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A*
2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Length = 108
Score = 175 bits (446), Expect = 3e-59
Identities = 56/92 (60%), Positives = 73/92 (79%)
Query: 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NP
Sbjct: 17 TRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNP 76
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A +
Sbjct: 77 XKYIPGTKMAFGGLKKEKDRNDLITYLKKACE 108
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A
{Oryza sativa} SCOP: a.3.1.1
Length = 112
Score = 172 bits (438), Expect = 5e-58
Identities = 52/91 (57%), Positives = 71/91 (78%)
Query: 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
KCAQCHT++ G HK GPNL+GL GR++G PG+SY+ A+ + W ++TL++YL NP
Sbjct: 21 TKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNP 80
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKM+F G+ KPQER DLI+YL++A+
Sbjct: 81 XKYIPGTKMVFPGLXKPQERADLISYLKEAT 111
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane
space, metal-binding, thioether bond, respiratory chain,
trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata}
PDB: 2yk3_A* 4dy9_A*
Length = 114
Score = 169 bits (430), Expect = 9e-57
Identities = 52/91 (57%), Positives = 67/91 (73%)
Query: 1 MKCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
+ AQCHT GGA+ VGPNL+GL+GR +G G++Y++AN + G+ W D L YLENP
Sbjct: 23 GRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENP 82
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
K++PGTKM FAG+KKPQER D+IAYLE
Sbjct: 83 XKFMPGTKMSFAGMKKPQERADVIAYLETLK 113
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM;
2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Length = 106
Score = 165 bits (421), Expect = 2e-55
Identities = 48/88 (54%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
C CHT GA+KVGP+L+G++GR +G PG++Y+EANIK GI W D LF+Y+E+P+
Sbjct: 18 ICITCHTDI-KGANKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQ 76
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQ 89
K +PGTKM + G PQ+R D+IAYLE
Sbjct: 77 KIVPGTKMGYPGQPDPQKRADIIAYLET 104
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain
(cytochrome), electron transfer, P. denitrificans,
electron donor; HET: HEC; 1.33A {Paracoccus
denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A*
1ql4_A*
Length = 140
Score = 166 bits (422), Expect = 4e-55
Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KC CH ++ G VGP+L+G++GR GF+Y++ G W + L E+L NPK
Sbjct: 53 KCKACHKLD--GNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 110
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQ 89
+ GTKM FAG+ K ++R +LIAYLE
Sbjct: 111 AVVKGTKMAFAGLPKIEDRANLIAYLEG 138
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A
{Methylobacterium extorquens} SCOP: a.3.1.1
Length = 100
Score = 160 bits (406), Expect = 3e-53
Identities = 40/91 (43%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENP 60
C CH E G VGP L G++G K G+ A G+++++A K G+TW++ L ++L +P
Sbjct: 13 PCKACHNFEKNG---VGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADP 69
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KK +PGTKM+F GI P++ D+IAYL+ S
Sbjct: 70 KKKVPGTKMVFPGISDPKKVDDIIAYLKTKS 100
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET:
HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Length = 121
Score = 149 bits (378), Expect = 1e-48
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
KC CH + + VGP L G+I R+ G APGF+Y+ N + G+ W + + YL
Sbjct: 14 KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLP 73
Query: 59 NPKKYIP--------------GTKMIFAGIKKPQERGDLIAYLEQAS 91
+P ++ TKM+F + QER D++AYL+Q S
Sbjct: 74 DPNAFLRKFLADAGHAEQAKGSTKMVFK-LPDEQERKDVVAYLKQFS 119
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM;
1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Length = 112
Score = 148 bits (375), Expect = 2e-48
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 12/99 (12%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
KC CHT + GGA+KVGPNL G+ ++Y+E+ KG+TW + L Y++
Sbjct: 13 KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVK 72
Query: 59 NPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQ 89
NPK ++ +KM F + K E ++IAYL+
Sbjct: 73 NPKAFVLEKSGDPKAKSKMTFK-LTKDDEIENVIAYLKT 110
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus
denitrificans} SCOP: a.3.1.1
Length = 135
Score = 141 bits (357), Expect = 2e-45
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 21/109 (19%)
Query: 2 KCAQCHTIEAGGA-----HKVGPNLHGLIGRKTGQAPGFSYTEA-----NIKKGITWNKD 51
KC CH I+A K GPNL+G++GRK GF Y E +TW +
Sbjct: 15 KCKACHMIQAPDGTDIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEA 74
Query: 52 TLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQASK 92
L EY+ +PK + TKM F K + + D++A+L Q
Sbjct: 75 NLIEYVTDPKPLVKKMTDDKGAKTKMTF---KMGKNQADVVAFLAQDDP 120
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial
ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A
{Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Length = 134
Score = 139 bits (352), Expect = 1e-44
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 2 KCAQCHTIEAGGA------HKVGPNLHGLIGRKTGQAPGFSYTEA-----NIKKGITWNK 50
KC CH ++A K GPNL+G++GRK GF Y + + W++
Sbjct: 14 KCKACHMVQAPDGTDIVKGGKTGPNLYGVVGRKIASVEGFKYGDGILEVAEKNPDMVWSE 73
Query: 51 DTLFEYLENPKKYIP-GTKMIFAGIKK----PQERGDLIAYLEQAS 91
L EY+ +PK ++ T A KK + + D++A+L Q S
Sbjct: 74 ADLIEYVTDPKPWLVEKTGDSAAKTKKTFKLGKNQADVVAFLAQHS 119
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A
{Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A*
1l9b_C* 1l9j_C* 2cxb_A*
Length = 124
Score = 137 bits (348), Expect = 4e-44
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 20/109 (18%)
Query: 2 KCAQCHTIE-------AGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIK----KGITWNK 50
+C CH I AG K GPNL+G++GR G F +K KG+ W++
Sbjct: 14 QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDE 73
Query: 51 DTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
+ +Y+++P K++ KM F +KK + ++ AYL+Q +
Sbjct: 74 EHFVQYVQDPTKFLKEYTGDAKAKGKMTFK-LKKEADAHNIWAYLQQVA 121
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A
{Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Length = 116
Score = 136 bits (345), Expect = 7e-44
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 2 KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTE---ANIKKGITWNKDT 52
KC CH+I E K GPNL+G++GR G P F Y + A G W ++
Sbjct: 12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 71
Query: 53 LFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQ 89
+ Y+++P ++ T+M F K ++ +A + +
Sbjct: 72 IATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLASVVK 116
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET:
HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1
PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Length = 114
Score = 135 bits (343), Expect = 1e-43
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
+C CH + VGP L G++GRK G A GF+Y+ N + G+ W D + YL
Sbjct: 12 QCMTCHR---ADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLA 68
Query: 59 NPKKYIPG--------------TKMIFAGIKKPQERGDLIAYLEQ 89
+P ++ TKM F + Q+R D++AYL
Sbjct: 69 DPNAFLKKFLTEKGKADQAVGVTKMTFK-LANEQQRKDVVAYLAT 112
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter
capsulatus} SCOP: a.3.1.1
Length = 137
Score = 136 bits (343), Expect = 4e-43
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 2 KCAQCHTI------EAGGAHKVGPNLHGLIGRKTGQAPGFSYTE---ANIKKGITWNKDT 52
KC CH+I E K GPNL+G++GR G P F Y + A G W ++
Sbjct: 33 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 92
Query: 53 LFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQASK 92
+ Y+++P ++ T M F K + D+ AYL K
Sbjct: 93 IATYVKDPGAFLKEKLDDKKAKTGMAFKLAKGGE---DVAAYLASVVK 137
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain,
oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Length = 99
Score = 73.0 bits (179), Expect = 7e-19
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CH+I+ G+ VGP+ GL G G + +++ L E + P
Sbjct: 18 CFSCHSID--GSRLVGPSFKGLYGSTRTFEDGTTAV---------ADENYLRESILQPGA 66
Query: 63 YI----PGTKMIFAGIKKPQERGDLIAYLEQ 89
+ P +E LI +++Q
Sbjct: 67 KVVQGYPNVMPASYASLSEREVAALIEFIKQ 97
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer,
electron transport; HET: HEC; NMR {Pseudomonas putida}
Length = 110
Score = 52.8 bits (126), Expect = 8e-11
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 1 MKCAQCHTIEAGGAHK--VGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE 58
+C+ CHT+ + +GP+L G+ + + + L E
Sbjct: 12 TRCSSCHTVGNTEPGQPGIGPDLLGV---------TRQRDANWLVRWLKVPDQMLAEKDP 62
Query: 59 NPK---KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
+ M + E LI+YLE+ +
Sbjct: 63 LAMLLFEQYNRLAMPNMRL-GDAEVSALISYLEEETA 98
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron
transport, heme, iron, membrane, CY membrane; HET: HEM
HEC; 2.70A {Pseudomonas aeruginosa}
Length = 146
Score = 51.9 bits (124), Expect = 4e-10
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 18/91 (19%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CHT+ GA+ P L ++GR+ G+ L +++
Sbjct: 61 CVGCHTLLGEGAY-FAPELGNVVGRRGGEE---------------GFNTFLQAWMKIQPL 104
Query: 63 YIPG-TKMIFAGIKKPQERGDLIAYLEQASK 92
+PG M + + DL +L+ +SK
Sbjct: 105 NVPGRRAMPQFHL-SEGQVDDLAEFLKWSSK 134
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport;
HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP:
a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V*
3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Length = 137
Score = 49.3 bits (117), Expect = 4e-09
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
CA CH GG K P+L P N + L +Y++NP
Sbjct: 36 ACASCH---VGGITKTNPSLDLRTETLALATPP------------RDNIEGLVDYMKNPT 80
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
Y G + I A + D+ + +
Sbjct: 81 TY-DGEQEI-AEVHPSLRSADIFPKMRNLT 108
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H
binding protein complex; HET: CSS HEC; 1.77A {Starkeya
novella} PDB: 3ocd_B*
Length = 208
Score = 49.1 bits (116), Expect = 1e-08
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 20/90 (22%)
Query: 3 CAQCHTIEAGGAH--KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENP 60
C CH ++ +GP+L G GR+ + + F + +
Sbjct: 125 CYACHQLDPKEVSYGTLGPSLVG-YGRERNFSA--------------EDAKIAFAKVYDA 169
Query: 61 KKYIPGTKM---IFAGIKKPQERGDLIAYL 87
+ + + M G+ Q+ D++AYL
Sbjct: 170 QASLACSSMPRFGVNGVLTEQQIKDVVAYL 199
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem,
membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A
{Thermosynechococcus elongatus} SCOP: i.5.1.1
Length = 163
Score = 46.4 bits (109), Expect = 7e-08
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH GG K P+L P N + L +Y++NP
Sbjct: 63 CASCH---VGGITKTNPSLDLRTETLALATPP------------RDNIEGLVDYMKNPTT 107
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
Y G + I A + D+ + +
Sbjct: 108 Y-DGEQEI-AEVHPSLRSADIFPKMRNLT 134
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome,
low potential, BIS_histidinyl, PSII modulator; HET: HEC;
1.21A {Synechocystis SP} SCOP: a.3.1.1
Length = 135
Score = 45.9 bits (108), Expect = 8e-08
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
C QCH G K N+ + G P N L E+L+NPK
Sbjct: 36 TCTQCH---LQGKTKTNNNVSLGLADLAGAEPR------------RDNVLALVEFLKNPK 80
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
Y G + + R D+ + +
Sbjct: 81 SY-DGEDDY-SELHPNISRPDIYPEMRNYT 108
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL
HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Length = 337
Score = 46.7 bits (111), Expect = 1e-07
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 14/88 (15%)
Query: 3 CAQCHTIE-AGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
CA CH + + +GP L GL G +T G + L ++ +P
Sbjct: 247 CAACHGVARSMPPAVIGPEL-GLWGNRTSLGAGIVEN----------TPENLKAWIRDPA 295
Query: 62 KYIPGTKM-IFAGIKKPQERGDLIAYLE 88
PG KM F + ++ L+ YLE
Sbjct: 296 GMKPGVKMPGFPQL-SEEDLDALVRYLE 322
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET:
HEC; 1.24A {Rhodothermus marinus}
Length = 124
Score = 45.1 bits (106), Expect = 1e-07
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 14/92 (15%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
C CH ++ +GP L + R I + + + +
Sbjct: 44 YCTACHRLDERF---IGPALRDVTKR---------RGPVYIMNVMLNPNGMIQRHPVMKQ 91
Query: 62 KYI-PGTKMIFAGIKKPQERGDLIAYLEQASK 92
GT M + + ++ ++ YL Q ++
Sbjct: 92 LVQEYGTMMTDMALSE-EQARAILEYLRQVAE 122
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET:
HEC; 1.92A {Paracoccus pantotrophus}
Length = 137
Score = 44.3 bits (104), Expect = 3e-07
Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 47/114 (41%)
Query: 3 CAQCHTIEAGGAHK----VGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE 58
C CH I A + + P L G R W + L +
Sbjct: 41 CVACHQIGALPDVEFPGTIAPPLDGAGDR--------------------WTEAQLRGIVA 80
Query: 59 NPKKYIPGTK-----------------------MIFAGIKKPQERGDLIAYLEQ 89
N K GT A I Q+ D++A+L
Sbjct: 81 NAKMTFEGTFMPAFYKVDGFVRPGDGFSGKAGAEPLAPILNAQQIEDVVAFLVT 134
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex,
thiosulfate oxidation, cysteine persulfide heme ligand;
HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1
PDB: 1h31_B* 1h33_B* 2oz1_B*
Length = 138
Score = 40.6 bits (94), Expect = 7e-06
Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 47/114 (41%)
Query: 3 CAQCHTIEAGGAHK----VGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE 58
C CH + + VGP+L G+ R + + + L
Sbjct: 42 CIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILV 81
Query: 59 NPKKYIPGTK-----------------------MIFAGIKKPQERGDLIAYLEQ 89
N K P T + + D++AYL
Sbjct: 82 NSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLMT 135
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM;
2.30A {Arthrospira maxima} SCOP: a.3.1.1
Length = 129
Score = 39.4 bits (91), Expect = 2e-05
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CAQCH A G + P+++ P N L +Y++NP
Sbjct: 35 CAQCH---ALGVTRTNPDVNLSPEALALATPPR------------DNIAALVDYIKNPTT 79
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
Y G I + + + D+ + S
Sbjct: 80 Y-DGFVEI-SELHPSLKSSDIFPKMRNIS 106
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron
transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP:
a.3.1.1 PDB: 1a8c_A*
Length = 81
Score = 33.2 bits (76), Expect = 0.002
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKG 45
C CH +E VGP L + + + +Y IK G
Sbjct: 10 CIACHQVETK---VVGPALKDIAAKYADKDDAATYLAGKIKGG 49
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron;
HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP:
a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Length = 80
Score = 31.6 bits (72), Expect = 0.007
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKG 45
C CH ++A KVGP + + G+ Y IKKG
Sbjct: 10 CMACHDLKAK---KVGPAYADVAKKYAGRKDAVDYLAGKIKKG 49
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue
copper protein, oxidoreductase, electron transport; HET:
TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1
PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Length = 147
Score = 32.2 bits (73), Expect = 0.008
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 21/91 (23%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
C+ CH A G +GP L+ G + T+ + +
Sbjct: 56 MCSGCHGHYAEGK--IGPGLNDAYWTYPG-----NETDVGLFSTLY-------------- 94
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
G G E +A++
Sbjct: 95 GGATGQMGPMWGSLTLDEMLRTMAWVRHLYT 125
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas
stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Length = 82
Score = 31.2 bits (71), Expect = 0.009
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKG 45
CA CH+++ VGP L + + G +IK G
Sbjct: 12 CAACHSVDTK---MVGPALKEVAAKNAGVEGAADTLALHIKNG 51
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM
resolution, electron transport; HET: HEM; 0.97A
{Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A*
1k3g_A* 1k3h_A* 1n9c_A*
Length = 71
Score = 30.9 bits (70), Expect = 0.012
Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 28/85 (32%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CH + GA P + Y+E I I N +
Sbjct: 11 CISCHGGDLTGA--SAPAIDKAGAN---------YSEEEILDIIL-----------NGQG 48
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
+P GI K E + A+L
Sbjct: 49 GMP------GGIAKGAEAEAVAAWL 67
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET:
HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A*
351c_A* 451c_A* 1dvv_A*
Length = 82
Score = 30.9 bits (70), Expect = 0.012
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKG 45
C CH I+ VGP + + GQA + IK G
Sbjct: 12 CVACHAIDTK---MVGPAYKDVAAKFAGQAGAEAELAQRIKNG 51
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices,
oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
stutzeri}
Length = 311
Score = 30.4 bits (68), Expect = 0.046
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 23/94 (24%)
Query: 1 MKCAQCHTIEAGGAHKVG-PNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLEN 59
CA CH G +G P L+ G G + +++ I
Sbjct: 231 QTCAVCHGQGGEGMAALGAPKLNSAAGWIYGS------SLGQLQQTIRHG---------- 274
Query: 60 PKKYIPGTKMI-FAGIKKPQERGDLIAYLEQASK 92
+M + L AY+ S+
Sbjct: 275 -----RNGQMPAQQQYLGDDKVHLLAAYVYSLSQ 303
Score = 27.0 bits (59), Expect = 0.96
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 22/85 (25%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C+ CH +A G+ PNL Q + A+IK I +
Sbjct: 143 CSICHGSDAKGS-LGFPNL-------ADQDWRWGGDAASIKTSILNGR------------ 182
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
+ + ++ A++
Sbjct: 183 --IAAMPAWGQAIGEEGVKNVAAFV 205
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport;
HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Length = 79
Score = 28.9 bits (65), Expect = 0.071
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKG 45
C CH I+ VGP+ + + T +KKG
Sbjct: 10 CMACHAIDKKL---VGPSYKDVAKKYTEADV--PKLVEKVKKG 47
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM;
1.98A {Hyphomicrobium denitrificans}
Length = 170
Score = 28.4 bits (63), Expect = 0.25
Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 21/90 (23%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C+ CH G VGP L+ + T+ + + I
Sbjct: 59 CSGCHGHIGEGK--VGPGLNDSYWTYPK-----NTTDKGLFETIF--------------G 97
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
G + LIA++ K
Sbjct: 98 GANGMMGPHGQDLELDNMLKLIAWIRHIQK 127
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM;
1.50A {Phaeodactylum tricornutum}
Length = 88
Score = 27.5 bits (61), Expect = 0.31
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH AGG + + P KT + A + ++ + K
Sbjct: 14 CAACH---AGGQNVIMPE-------KTLEKEALDQYLAGG-----RTEKSIISQVTGGKN 58
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
+P F G +E ++ AY+ +++
Sbjct: 59 AMPA----FGGRLSDEEIANVAAYVLASAE 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.49
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 23/69 (33%)
Query: 14 AHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGI-TWNKDTLFEYLENPKKYIPGTKMIFA 72
P +I +I+ G+ TW+ ++++ K T +I +
Sbjct: 322 VLTTNPRRLSIIA-------------ESIRDGLATWDN---WKHVNCDKL----TTIIES 361
Query: 73 GIK--KPQE 79
+ +P E
Sbjct: 362 SLNVLEPAE 370
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer
electron transport, heme, iron, metal-binding,
thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Length = 93
Score = 26.8 bits (59), Expect = 0.59
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 14/89 (15%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH + KT +A A K G ++ + + N +
Sbjct: 14 CAACHAGGNNAV----------MPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTNGQG 63
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
+P F G + ++ AY+ +
Sbjct: 64 AMPA----FGGRLSDADIANVAAYIADQA 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 0.85
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 14/40 (35%)
Query: 41 NIKKGITWNKDTLFEYLENP-KKYIPGTKMIFAGIKKPQE 79
+KK L+ K Y + A IK E
Sbjct: 21 ALKK------------LQASLKLYADDSAPALA-IKATME 47
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron
transport protein (cytochrome); HET: HEM; 1.90A
{Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Length = 90
Score = 26.0 bits (57), Expect = 0.96
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 20/91 (21%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH GG + V P L Q + +I + N K
Sbjct: 14 CAACHM---GGRNSVMPEK-TLDKAALEQYLDGGFKVESIIYQVE-----------NGKG 58
Query: 63 YIPGTKMIFAGIKKPQERGDLIAY-LEQASK 92
+P +A +E + Y +QA+
Sbjct: 59 AMPA----WADRLSEEEIQAVAEYVFKQATD 85
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET:
HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Length = 172
Score = 26.5 bits (58), Expect = 1.2
Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 21/90 (23%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C+ CH A G +GP L + LF +
Sbjct: 65 CSGCHGHLAEGK--LGPGL----------------NDNYWTYPSNTTDVGLFATIFGGA- 105
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
G P E IA++
Sbjct: 106 --NGMMGPHNENLTPDEMLQTIAWIRHLYT 133
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium,
electron transport; HET: HEM; NMR {Halorhodospira
halophila} SCOP: a.3.1.1
Length = 78
Score = 25.5 bits (56), Expect = 1.4
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 3 CAQCHTIEAGGAHKVG 18
C+ CH GA ++
Sbjct: 14 CSSCHDRGVAGAPELN 29
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD
phasing, dissimilatory metal reduction, electron
transport; HET: HEM; 1.86A {Geobacter sulfurreducens}
Length = 99
Score = 25.7 bits (56), Expect = 1.4
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 21/89 (23%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH G + V P + A + + Y+ NP
Sbjct: 30 CAGCH---PQGGNTVH--------------PEKTLARARREANGIRTVRDVAAYIRNPGP 72
Query: 63 YIPGTKMIFAGIKKPQERGDLIAY-LEQA 90
+P + P + + Y +
Sbjct: 73 GMPAFG---EAMIPPADALKIGEYVVASF 98
>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix
polysia; HET: PEG; 1.70A {Escherichia coli}
Length = 252
Score = 26.3 bits (58), Expect = 1.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 42 IKKGITWNKDTLFEYLENPKKY 63
IK+ I W + E + + K+
Sbjct: 214 IKRNIIWARTDKAELISDDKRC 235
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A
{Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Length = 85
Score = 25.6 bits (56), Expect = 1.7
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 21/90 (23%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH GG + + P+ KT + ++ D + ++N K
Sbjct: 14 CAACHA---GGNNAIMPD-------KTLKKD-------VLEANSMNTIDAITYQVQNGKN 56
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
+P F G ++ D Y+ S+
Sbjct: 57 AMPA----FGGRLVDEDIEDAANYVLSQSE 82
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron
transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Length = 85
Score = 25.3 bits (55), Expect = 2.0
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 21/89 (23%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH G + V P + A + + Y+ NP
Sbjct: 16 CAGCH---PQGGNTVH--------------PEKTLARARREANGIRTVRDVAAYIRNPGP 58
Query: 63 YIPGTKMIFAGIKKPQERGDLIAY-LEQA 90
+P + P + + Y +
Sbjct: 59 GMPA---FGEAMIPPADALKIGEYVVASF 84
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.9 bits (56), Expect = 2.1
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 17/76 (22%)
Query: 8 TIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGT 67
I A ++ P L + KK W+ + K Y
Sbjct: 173 NI----AIEL-PPNEILFSENNDMDNNNDGVDELNKKCTFWDAIS--------KLYY--V 217
Query: 68 KMIFAGIKKPQERGDL 83
+ F + QE+ D+
Sbjct: 218 QFFFK--QAEQEQADV 231
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit;
flavocytochrome, electron-transfer, FAD, heme,
oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas
putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Length = 80
Score = 24.9 bits (54), Expect = 3.0
Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 3 CAQCHTIEAGGAHKVGPNLHG 23
C CH E G VGP L G
Sbjct: 15 CGHCHKPEVG----VGPVLEG 31
>1c6r_A Cytochrome C6; electron transport protein, reduced state,
photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus}
SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Length = 89
Score = 24.5 bits (53), Expect = 3.8
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 19/89 (21%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH GG + V P+ L Q + I + N K
Sbjct: 15 CAACHA---GGNNSVIPDH-TLRKAAMEQFLQGGFNLEAITYQVE-----------NGKG 59
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
+P ++G E + AY+ +
Sbjct: 60 AMPA----WSGTLDDDEIAAVAAYVYDQA 84
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A
{Azotobacter vinelandii} SCOP: a.3.1.1
Length = 83
Score = 24.6 bits (53), Expect = 4.0
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 3 CAQCHTIEAGGAHKVGPN 20
C CH A KVG +
Sbjct: 15 CNACHGTGLLNAPKVGDS 32
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron,
thylakoid, photosynthesis, metal-binding, electron
transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB:
2ce1_A* 2dge_A* 2v07_A*
Length = 105
Score = 24.6 bits (53), Expect = 4.1
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH G + G L + G TE I + + K + + E
Sbjct: 16 CAACH-DTGGNIIQPGATLFTKDLERNG-----VDTEEEIYRVTYFGKGRMPGFGEKCT- 68
Query: 63 YIPGTKMIFAGIKKPQERGDLIAY-LEQASK 92
P + F + +E L + QA +
Sbjct: 69 --PRGQCTFGPRLQDEEIKLLAEFVKFQADQ 97
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold
reverse binding of N oxidoreductase; HET: NAP; 2.00A
{Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Length = 207
Score = 24.7 bits (54), Expect = 4.3
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 57 LENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
++NP Y P T M+ KK + L A + ++ +
Sbjct: 173 VDNPIFYKPNTAMLLGDAKKTCD--ALQAKVRESYQ 206
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 25.0 bits (54), Expect = 4.5
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 3 CAQCHTIEAGGAHKVGPNL 21
C CH + PNL
Sbjct: 604 CVFCHGVPGVDRGGNIPNL 622
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 24.9 bits (55), Expect = 4.6
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 23 GLIGRKTGQAPGF-SYTEANIKKGITWNKDTLFEYL 57
G +G K G+ G Y ++ + L +L
Sbjct: 258 GEVGVKAGK--GIYEYGPKAYEERVE-RLKKLLRFL 290
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification,
oxidoreductase/electron transport complex; HET: HEM;
1.70A {Achromobacter xylosoxidans}
Length = 87
Score = 24.2 bits (52), Expect = 4.8
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 3 CAQCHTIEAGGAHKVG 18
C CH A K+G
Sbjct: 20 CVVCHASGVANAPKLG 35
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H)
complex, inverted binding of NADP(H), oxidoreductase;
HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Length = 184
Score = 24.4 bits (53), Expect = 5.9
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 57 LENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
++NP Y P T M+ KK + L A + ++ +
Sbjct: 150 VDNPIFYKPNTAMLLGDAKKTCD--ALQAKVRESYQ 183
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 24.7 bits (53), Expect = 6.2
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 48 WNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDL 83
+N L E + N PG K I I+ ER DL
Sbjct: 389 YNIYQLQELVRNGPDEHPGAKYI---IRDTGERIDL 421
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 24.7 bits (53), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 48 WNKDTLFEYLEN-PKKYIPGTKMIFAGIKKPQERGDL 83
+N D L + + N P ++ PG K + I+ +R DL
Sbjct: 383 YNIDRLTQLVRNGPNEH-PGAKYV---IRDSGDRIDL 415
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 24.1 bits (53), Expect = 7.6
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 24 LIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKK 76
G +G G + K + + TL Y N + +F +
Sbjct: 237 SFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLAS 289
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A
{Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Length = 345
Score = 24.2 bits (53), Expect = 8.9
Identities = 6/27 (22%), Positives = 7/27 (25%), Gaps = 2/27 (7%)
Query: 3 CAQCHTIEAGGAH--KVGPNLHGLIGR 27
C CH + GG G
Sbjct: 73 CNTCHNVGLGGGDLQATSTGHGWQKGP 99
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision,
ammonia-oxidizing bacteria, oxidoreductase; HET: HEM;
1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Length = 308
Score = 23.8 bits (52), Expect = 9.8
Identities = 6/27 (22%), Positives = 7/27 (25%), Gaps = 2/27 (7%)
Query: 3 CAQCHTIEAGGAH--KVGPNLHGLIGR 27
C CH + GG G
Sbjct: 39 CNSCHNLSMGGTDNITTSIGHKWQQGP 65
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide,
oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Length = 320
Score = 23.8 bits (52), Expect = 9.8
Identities = 7/27 (25%), Positives = 8/27 (29%), Gaps = 2/27 (7%)
Query: 3 CAQCHTIEAGGAH--KVGPNLHGLIGR 27
C CH + GG H G
Sbjct: 47 CNSCHNLSTGGVDALPTSIGHHWQEGP 73
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome,
electron transport, GRAM negative, bacteria; HET: HEC;
NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB:
1kx7_A*
Length = 81
Score = 23.4 bits (50), Expect = 9.8
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 3 CAQCHTIEAGGAHKVG 18
C CH++ GA K
Sbjct: 14 CTVCHSMGVAGAPKSH 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.416
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,435,603
Number of extensions: 72788
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 81
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)