RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8407
(92 letters)
>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis
[TaxId: 1079]}
Length = 107
Score = 122 bits (308), Expect = 9e-39
Identities = 46/91 (50%), Positives = 63/91 (69%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C CH+I G +KVGP L+GL GR +G GF+Y++AN GITW ++ EY+ +PK
Sbjct: 12 QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPK 71
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
IPGTKMIFAG+K Q+ DLIAY++Q +
Sbjct: 72 AKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 102
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 108
Score = 118 bits (296), Expect = 6e-37
Identities = 57/91 (62%), Positives = 74/91 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
+C QCHT+E GG HKVGPNLHG+ GR +GQA G+SYT+ANIKK + W+++ + EYL NPK
Sbjct: 18 RCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPK 77
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
KYIPGTKM F G+KK ++R DLI YL++A +
Sbjct: 78 KYIPGTKMAFGGLKKEKDRNDLITYLKKACE 108
>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos
(Oryza sativa) [TaxId: 4530]}
Length = 111
Score = 110 bits (277), Expect = 5e-34
Identities = 54/90 (60%), Positives = 73/90 (81%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT++ G HK GPNL+GL GR++G PG+SY+ A+ + W ++TL++YL NPK
Sbjct: 21 KCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPK 80
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKM+F G+KKPQER DLI+YL++A+
Sbjct: 81 KYIPGTKMVFPGLKKPQERADLISYLKEAT 110
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans
[TaxId: 266]}
Length = 99
Score = 108 bits (272), Expect = 2e-33
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KC CH ++ VGP+L+G++GR GF+Y++ G W + L E+L NPK
Sbjct: 12 KCKACHKLDGN--DGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPK 69
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQ 89
+ GTKM FAG+ K ++R +LIAYLE
Sbjct: 70 AVVKGTKMAFAGLPKIEDRANLIAYLEG 97
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId:
34018]}
Length = 118
Score = 106 bits (266), Expect = 3e-32
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
KC CH + + VGP L G+I R+ G APGF+Y+ N + G+ W + + YL
Sbjct: 12 KCMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAINHAAGEAGLHWTPENIIAYLP 71
Query: 59 NPKKYIP--------------GTKMIFAGIKKPQERGDLIAYLEQAS 91
+P ++ TKM+F + QER D++AYL+Q S
Sbjct: 72 DPNAFLRKFLADAGHAEQAKGSTKMVF-KLPDEQERKDVVAYLKQFS 117
>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens
[TaxId: 408]}
Length = 99
Score = 104 bits (260), Expect = 2e-31
Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQ-APGFSYTEANIKKGITWNKDTLFEYLENP 60
C CH E + VGP L G++G K G+ A G+++++A K G+TW++ L ++L +P
Sbjct: 13 PCKACHNFEK---NGVGPTLKGVVGAKAGEGADGYAFSDALKKSGLTWDQADLKQWLADP 69
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLE 88
KK +PGTKM+F GI P++ D+IAYL+
Sbjct: 70 KKKVPGTKMVFPGISDPKKVDDIIAYLK 97
>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId:
1071]}
Length = 105
Score = 99.4 bits (247), Expect = 1e-29
Identities = 47/87 (54%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
C CHT G +KVGP+L+G++GR +G PG++Y+EANIK GI W D LF+Y+E+P+
Sbjct: 17 ICITCHTDIKGA-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQ 75
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLE 88
K +PGTKM + G PQ+R D+IAYLE
Sbjct: 76 KIVPGTKMGYPGQPDPQKRADIIAYLE 102
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna
(Thunnus thynnus) [TaxId: 8237]}
Length = 103
Score = 93.4 bits (231), Expect = 3e-27
Identities = 70/90 (77%), Positives = 76/90 (84%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPK 61
KCAQCHT+E GG HKVGPNL GL GRKTGQA G+SYT+AN KGI WN DTL EYLENPK
Sbjct: 13 KCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPK 72
Query: 62 KYIPGTKMIFAGIKKPQERGDLIAYLEQAS 91
KYIPGTKMIFAGIKK ER DL+AYL+ A+
Sbjct: 73 KYIPGTKMIFAGIKKKGERQDLVAYLKSAT 102
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId:
1085]}
Length = 112
Score = 87.9 bits (217), Expect = 5e-25
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIK---KGITWNKDTLFEYLE 58
KC CHT + GGA+KVGPNL G+ ++Y+E+ + KG+TW + L Y++
Sbjct: 13 KCLACHTFDQGGANKVGPNLFGVFENTAAHKDNYAYSESYTEMKAKGLTWTEANLAAYVK 72
Query: 59 NPKKYI--------PGTKMIFAGIKKPQERGDLIAYLE 88
NPK ++ +KM F + K E ++IAYL+
Sbjct: 73 NPKAFVLEKSGDPKAKSKMTF-KLTKDDEIENVIAYLK 109
>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId:
1061]}
Length = 116
Score = 87.5 bits (216), Expect = 1e-24
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 2 KCAQCHTIEA------GGAHKVGPNLHGLIGRKTGQAPGFSYTE---ANIKKGITWNKDT 52
KC CH+I A K GPNL+G++GR G P F Y + A G W ++
Sbjct: 12 KCKTCHSIIAPDGTEIVKGAKTGPNLYGVVGRTAGTYPEFKYKDSIVALGASGFAWTEED 71
Query: 53 LFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQASK 92
+ Y+++P ++ T+M F K + D+ AYL K
Sbjct: 72 IATYVKDPGAFLKEKLDDKKAKTEMAFKLAKGGE---DVAAYLASVVK 116
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans
[TaxId: 266]}
Length = 121
Score = 81.8 bits (201), Expect = 2e-22
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 2 KCAQCHTIEAGGA------HKVGPNLHGLIGRKTGQAPGFSYTEA-----NIKKGITWNK 50
KC CH I+A K GPNL+G++GRK GF Y E +TW +
Sbjct: 13 KCKACHMIQAPDGTDIIKGGKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTE 72
Query: 51 DTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
L EY+ +PK ++ TKM F K + + D++A+L Q S
Sbjct: 73 ADLIEYVTDPKPWLVKMTDDKGAKTKMTF---KMGKNQADVVAFLAQNS 118
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 124
Score = 73.0 bits (178), Expect = 6e-19
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 2 KCAQCHTIEAGGA-------HKVGPNLHGLIGRKTGQAPGFSYTEANIKK----GITWNK 50
+C CH I K GPNL+G++GR G F +K+ G+ W++
Sbjct: 14 QCQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDE 73
Query: 51 DTLFEYLENPKKYI--------PGTKMIFAGIKKPQERGDLIAYLEQAS 91
+ +Y+++P K++ KM F +KK + ++ AYL+Q +
Sbjct: 74 EHFVQYVQDPTKFLKEYTGDAKAKGKMTF-KLKKEADAHNIWAYLQQVA 121
>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris
[TaxId: 1076]}
Length = 114
Score = 72.2 bits (176), Expect = 8e-19
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANI---KKGITWNKDTLFEYLE 58
+C CH + VGP L G++GRK G A GF+Y+ N + G+ W D + YL
Sbjct: 12 QCMTCHRA---DKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLA 68
Query: 59 NPKKYIPG--------------TKMIFAGIKKPQERGDLIAYLE 88
+P ++ TKM F + Q+R D++AYL
Sbjct: 69 DPNAFLKKFLTEKGKADQAVGVTKMTF-KLANEQQRKDVVAYLA 111
>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum
sulfidophilum [TaxId: 35806]}
Length = 138
Score = 39.9 bits (92), Expect = 5e-06
Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 47/113 (41%)
Query: 3 CAQCHTIEAGGAH----KVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLE 58
C CH + VGP+L G+ R + + + L
Sbjct: 42 CIACHEVTEMADAQFPGTVGPSLDGVAAR--------------------YPEAMIRGILV 81
Query: 59 NPKKYIPGTK-----------------------MIFAGIKKPQERGDLIAYLE 88
N K P T + + D++AYL
Sbjct: 82 NSKNVFPETVMPAYYRVEGFNRPGIAFTSKPIEGEIRPLMTAGQIEDVVAYLM 134
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter
thermophilus [TaxId: 940]}
Length = 80
Score = 35.6 bits (81), Expect = 7e-05
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CH ++A VGP + + G+ D L ++
Sbjct: 10 CMACHDLKAKK---VGPAYADVAKKYAGR---------------KDAVDYLAGKIKKGGS 51
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
+ G+ + E L ++
Sbjct: 52 GVWGSVPMPPQNVTDAEAKQLAQWI 76
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 82
Score = 35.3 bits (80), Expect = 1e-04
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 18/85 (21%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CH I+ VGP + + GQA + L + ++N +
Sbjct: 12 CVACHAID---TKMVGPAYKDVAAKFAGQA---------------GAEAELAQRIKNGSQ 53
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
+ G + E L ++
Sbjct: 54 GVWGPIPMPPNAVSDDEAQTLAKWV 78
>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
{Arthrospira maxima [TaxId: 129910]}
Length = 129
Score = 31.9 bits (71), Expect = 0.004
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 4/92 (4%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGIT-WNKDTLFEYLENP 60
CAQCH A G + P+++ P A + D E E
Sbjct: 34 ACAQCH---ALGVTRTNPDVNLSPEALALATPPRDNIAALVDYIKNPTTYDGFVEISELH 90
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
+ ++ Y+ K
Sbjct: 91 PSLKSSDIFPKMRNISEDDLYNVAGYILLQPK 122
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus
[TaxId: 274]}
Length = 131
Score = 31.7 bits (71), Expect = 0.005
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH G P L G + + G Y + G+ + K
Sbjct: 11 CAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEV------KGMK 64
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQA 90
Y M K +E ++ ++ A
Sbjct: 65 YNGV--MSSFAQLKDEEIAAVLNHIATA 90
>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea
[TaxId: 915]}
Length = 81
Score = 30.3 bits (67), Expect = 0.008
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 17/85 (20%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CH +E VGP L + + + +Y IK G +
Sbjct: 10 CIACHQVETKV---VGPALKDIAAKYADKDDAATYLAGKIKGGSSGV------------- 53
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
M + L ++
Sbjct: 54 -WGQIPMPPNVNVSDADAKALADWI 77
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri
[TaxId: 316]}
Length = 82
Score = 29.2 bits (64), Expect = 0.027
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH+I+ A VGP + + GQ D L +++N +
Sbjct: 12 CAACHSID---AKLVGPAFKEVAAKYAGQD---------------GAADLLAGHIKNGSQ 53
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
+ G + +E L ++
Sbjct: 54 GVWGPIPMPPNPVTEEEAKILAEWI 78
>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus
[TaxId: 146786]}
Length = 131
Score = 29.6 bits (65), Expect = 0.028
Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 4/92 (4%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGIT-WNKDTLFEYLENP 60
CA CH GG K P+L P E + D E E
Sbjct: 36 ACASCHV---GGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVH 92
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
++ + ++ K
Sbjct: 93 PSLRSADIFPKMRNLTEKDLVAIAGHILVEPK 124
>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 135
Score = 29.5 bits (65), Expect = 0.036
Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGIT-WNKDTLFEYLENP 60
C QCH G K N+ + G P A ++ + D +Y E
Sbjct: 36 TCTQCHL---QGKTKTNNNVSLGLADLAGAEPRRDNVLALVEFLKNPKSYDGEDDYSELH 92
Query: 61 KKYIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
+ D+ Y A K
Sbjct: 93 PNISRPDIYPEMRNYTEDDIFDVAGYTLIAPK 124
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Arthrospira maxima [TaxId: 129910]}
Length = 88
Score = 27.5 bits (60), Expect = 0.10
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 17/90 (18%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
CA CH G + +++++ K + D +
Sbjct: 13 CAACHM--GGR---------------NVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVT 55
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQASK 92
F G P + D+ AY+ ++
Sbjct: 56 NGKNAMPGFNGRLSPLQIEDVAAYVVDQAE 85
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Monoraphidium braunii [TaxId: 34112]}
Length = 89
Score = 26.3 bits (57), Expect = 0.35
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 19 PNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQ 78
H G +N + + +EN K +P + G
Sbjct: 16 AACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAMPA----WDGRLDED 71
Query: 79 ERGDLIAYLEQASK 92
E + AY+ +
Sbjct: 72 EIAGVAAYVYDQAA 85
>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 90
Score = 26.3 bits (57), Expect = 0.37
Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 19 PNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQ 78
H + +++ +EN K +P +A +
Sbjct: 15 AACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAMPA----WADRLSEE 70
Query: 79 ERGDLIAYLEQASK 92
E + Y+ + +
Sbjct: 71 EIQAVAEYVFKQAT 84
>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Red alga (Porphyra yezoensis) [TaxId: 2788]}
Length = 85
Score = 25.6 bits (55), Expect = 0.53
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 29 TGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAY-L 87
P + + ++ D + ++N K +P F G ++ D Y L
Sbjct: 23 NAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPA----FGGRLVDEDIEDAANYVL 78
Query: 88 EQASK 92
Q+ K
Sbjct: 79 SQSEK 83
>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira
halophila [TaxId: 1053]}
Length = 78
Score = 25.1 bits (54), Expect = 0.68
Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 24/85 (28%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C+ CH GA ++ + D L E K
Sbjct: 14 CSSCHDRGVAGAPELNAPEDW--------------------ADRPSSVDELVESTLAGK- 52
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYL 87
G + G ++ I Y+
Sbjct: 53 ---GAMPAYDGRADREDLVKAIEYM 74
>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri
[TaxId: 316]}
Length = 92
Score = 25.0 bits (53), Expect = 0.89
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 13/87 (14%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CH ++ P L G Y ++ + E +
Sbjct: 14 CGACHGVDGNSPAPNFPKLAGQG---------ERYLLKQLQDIKAGSTPGAPEGVGRKVL 64
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQ 89
+ G Q+ D+ AY
Sbjct: 65 EMTG----MLDPLSDQDLEDIAAYFSS 87
>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Green alga (Cladophora glomerata) [TaxId: 162068]}
Length = 91
Score = 24.9 bits (53), Expect = 1.1
Identities = 6/73 (8%), Positives = 15/73 (20%), Gaps = 4/73 (5%)
Query: 19 PNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQ 78
H + + + N K +P +A
Sbjct: 18 AACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKGAMPA----WADRLDED 73
Query: 79 ERGDLIAYLEQAS 91
+ + Y+ +
Sbjct: 74 DIEAVSNYVYDQA 86
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 24.9 bits (53), Expect = 1.6
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 34 GFSYTEANIKKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQE 79
G++ + +G+ ++T+ Y +N + + + A K QE
Sbjct: 301 GWTPQFTDFSEGL---EETIQWYTDNQDWWKAEKEAVEANYAKTQE 343
>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase,
C-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 97
Score = 24.1 bits (51), Expect = 2.2
Identities = 12/87 (13%), Positives = 20/87 (22%), Gaps = 22/87 (25%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGLIGRKTGQAPGFSYTEANIKKGITWNKDTLFEYLENPKK 62
C CH + G N+ L + KG
Sbjct: 26 CVFCHGVPGVDR---GGNIPNLGYMDASYI---ENLPNFVFKGP---------------- 63
Query: 63 YIPGTKMIFAGIKKPQERGDLIAYLEQ 89
+ F G + L A+++
Sbjct: 64 AMVRGMPDFTGKLSGDDVESLKAFIQG 90
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Bacillus pasteurii [TaxId: 1474]}
Length = 71
Score = 23.5 bits (50), Expect = 2.4
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 14/59 (23%)
Query: 2 KCAQCHTIEAGGAHKVGPNLHGLIGRKT------------GQAPGFSYTEANIKKGITW 48
KC CH + GA P + + G PG A + W
Sbjct: 10 KCISCHGGDLTGA--SAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAW 66
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella
putrefaciens [TaxId: 24]}
Length = 81
Score = 23.7 bits (50), Expect = 3.0
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 3 CAQCHTIEAGGAHKVGPNL 21
C CH++ GA K
Sbjct: 14 CTVCHSMGVAGAPKSHNTA 32
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii
[TaxId: 354]}
Length = 83
Score = 23.6 bits (50), Expect = 3.1
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 3 CAQCHTIEAGGAHKVGPNLHG 23
C CH A KVG +
Sbjct: 15 CNACHGTGLLNAPKVGDSAAW 35
>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId:
2743]}
Length = 86
Score = 23.2 bits (49), Expect = 3.8
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 3 CAQCHTIEAGGAHKVGPNLHGL 24
CA CH + PNL G
Sbjct: 14 CAACHGQNGISQVPIYPNLAGQ 35
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Cyanobacterium (Synechococcus elongatus) [TaxId:
32046]}
Length = 87
Score = 23.3 bits (49), Expect = 4.3
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 43 KKGITWNKDTLFEYLENPKKYIPGTKMIFAGIKKPQERGDLIAY-LEQASK 92
K+ + + + ++ FAG ++ D+ AY L+QA+K
Sbjct: 33 KEALEQFGMYSEDAIIYQVQHGKNAMPAFAGRLTDEQIQDVAAYVLDQAAK 83
>d1d4oa_ c.31.1.4 (A:) Transhydrogenase domain III (dIII) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 177
Score = 23.2 bits (50), Expect = 6.3
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 57 LENPKKYIPGTKMIFAGIKKPQERGDLIAYLEQA 90
++NP Y P T M+ KK + L A + ++
Sbjct: 146 VDNPIFYKPNTAMLLGDAKKTCD--ALQAKVRES 177
>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c
{Rhodobacter sphaeroides [TaxId: 1063]}
Length = 112
Score = 22.5 bits (48), Expect = 7.9
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 77 PQERGDLIAYLEQ 89
P E+ DL+A+L
Sbjct: 99 PGEKADLLAWLAA 111
>d1gu2a_ a.3.1.1 (A:) Cytochrome c'' {Methylophilus methylotrophus,
strain w3a1 [TaxId: 17]}
Length = 124
Score = 22.6 bits (48), Expect = 8.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 77 PQERGDLIAYLEQASK 92
P E+ + IAYL +K
Sbjct: 106 PSEKANFIAYLLTETK 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.416
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,096
Number of extensions: 14687
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 49
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)