Query psy8408
Match_columns 393
No_of_seqs 138 out of 497
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 17:59:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02748 viral inexin-like pro 100.0 2E-111 4E-116 843.0 35.6 355 3-364 1-355 (360)
2 PF00876 Innexin: Innexin; In 100.0 2.7E-98 6E-103 749.3 29.4 326 26-363 1-347 (348)
3 cd00929 Cyt_c_Oxidase_VIIc Cyt 46.1 30 0.00064 24.9 3.3 32 266-297 11-42 (46)
4 COG4478 Predicted membrane pro 45.2 1E+02 0.0022 28.9 7.4 33 275-307 6-38 (210)
5 PF05402 PqqD: Coenzyme PQQ sy 32.1 1.3E+02 0.0029 22.2 5.3 28 129-156 15-43 (68)
6 PF04088 Peroxin-13_N: Peroxin 28.0 40 0.00088 30.5 2.0 22 118-140 136-157 (158)
7 MTH00171 ATP8 ATP synthase F0 16.6 1.5E+02 0.0032 21.3 2.7 15 275-289 10-24 (54)
8 PF08038 Tom7: TOM7 family; I 15.9 98 0.0021 21.8 1.5 16 110-125 11-26 (42)
9 COG1981 Predicted membrane pro 15.7 97 0.0021 27.7 1.7 25 114-138 6-35 (149)
10 PF12273 RCR: Chitin synthesis 15.3 1.1E+02 0.0023 26.4 1.9 11 282-292 2-12 (130)
No 1
>PHA02748 viral inexin-like protein; Provisional
Probab=100.00 E-value=1.8e-111 Score=842.98 Aligned_cols=355 Identities=37% Similarity=0.734 Sum_probs=335.0
Q ss_pred hHHHHHHhhhhhhhhcccccccccccceeeehhhhHHHHHHHHHHHhhhhhcCCCeeeecCCCCCcccccceeeeeeeee
Q psy8408 3 VFAMVSAMAGFVKVRYLMDKAIIDNLVFRCHYRITSAMLFVSCVLVTANNLIGDPINCIADGAVPGHVINTYCWITSTFT 82 (393)
Q Consensus 3 m~~~~~~l~~~l~~~~~~~~~~~Dd~vdRL~y~~Tv~lL~~~s~lvs~kqy~G~PI~C~~P~~f~~~y~~~yCwi~~Ty~ 82 (393)
|.+++++|++++|++ ++.+||++|||||++|+++|++||+++|+|||||+||+||+|+++ ++|+|+||||||||+
T Consensus 1 M~~~~~~l~~~lk~~----~v~~Dd~vdrLhy~~Tv~iL~~~silvs~kQy~G~PI~C~~p~~~-~~~~n~yCwi~~Ty~ 75 (360)
T PHA02748 1 MLDLFSALRGLLKVQ----SVSIDNNFFRLHYKITVIILLAFSLLVTSRQYFGDPIDCDFPDYP-NGSLNTYCYVQSTFL 75 (360)
T ss_pred ChhHHHHHHHhhCcc----eeeccchhheehHHHHHHHHHHHHHHHHHHHHCCCCeEeccCCCc-cchhhceeeeeeEEE
Confidence 589999999999997 999999999999999999999999999999999999999999766 579999999999999
Q ss_pred ecCCCCCCCCccccCCCCCCCCCCcccceeeeecchhHHHHHHHHHhhhhhhHHHhhhccCcHHHHHHhhhhhcCCCHHH
Q psy8408 83 LPHQAHKPVGSHVIHPAVGSYVEGEDEKRYHTYYQWVPFMLFFQGILFYVPHWIWKNLEENKVRMITDGMRGAIVTSKED 162 (393)
Q Consensus 83 vp~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~YYQWVpfvL~lQA~lFylP~~iWk~~~~~~l~~l~~~~~~~~~~~~~~ 162 (393)
+|.+.....+.++|+||++++ .+++++++++|||||||+|++||++||+|+++||.++||++++++.+++.+..+ +++
T Consensus 76 v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~YYQWVpfvL~lQA~lFYiP~~iWk~~egg~i~~l~~~~~~~~~~-~~~ 153 (360)
T PHA02748 76 VERKVTHTVNSTVPDPGVSGD-TEEDELRYYGYYQWVFITLFLQAVFFYIPHYIWKAWEGGKMKMLAVELASPVLS-KDC 153 (360)
T ss_pred eecccccccccccCCCCCCCC-ccccceeEeceeeHHHHHHHHHHHHHHchHHHHHHhccCcHHHHHHhhccccCC-HHH
Confidence 999887777777888888765 566788999999999999999999999999999999999999999888765544 888
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhCCccccchHHHHHhhccccCCcCCCCcccCCe
Q psy8408 163 RRERQKRLVQYIIDTLHMHNVYAAGYFFCEFLNFVNVVGNMILIDSFLGGTFFTYGTEVLKFTQLNQENRTDPMVEVFPR 242 (393)
Q Consensus 163 r~~~~~~l~~~~~~~~~~~~~~~~~Y~~~K~L~l~Nvv~Q~~ll~~FLg~~~~~~G~~vl~~~~~~~~~~~~~~s~~FPR 242 (393)
|+++++.+++|+.++++.|+.|+..|++||+||++|+++|+++||+|||+++..||++++.+...++++|+||++++|||
T Consensus 154 ~~~~i~~l~~y~~~~l~~h~~y~~~Y~~~klL~l~Nvi~Qi~lmn~FLg~~f~~yG~~vl~~~~~~~~~~~~~~s~~FPr 233 (360)
T PHA02748 154 IEKNTQPLVDYFFMNLHSHNAYAYKYFTCELLNLINIVGQIQFMNIFIGEDFQLYGIYVIFFNQEAGKSMTNPMERLFPT 233 (360)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhccHHHHhhhhhccccccCcccCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999987766678999999999999
Q ss_pred eeeeeeeeecCCCCcceeeeeeeecccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhhccCChhh
Q psy8408 243 VTKCTFHKYGSSGSIQDHDALCILALNILNEKIYILLWFWFYALAIMSFGAICYSLSVITLPSIRETILIRRFRFGTPAG 322 (393)
Q Consensus 243 VT~Cdf~~~~~~Gnv~~~tvqCvLpiN~~NEKIfifLWFW~v~l~vit~~~li~w~~~l~~~~~R~~~i~~~l~~~~~~~ 322 (393)
||+|||+++|++||+|+||+|||||+||+|||||+||||||++|+++|++++++|++++++++.|.++++.+.+..+++.
T Consensus 234 vT~C~f~~~~~~G~~~~~~~qCVLpiN~~NEKIfiFLWFW~~~lav~t~~~~~~~i~~~~~~~~R~~~ir~~~~~~~~~~ 313 (360)
T PHA02748 234 VTKCTYEKYGPSGTPENIEGICLLTQNSLNEKIYVFLWFWFHILAVISAFVVIYRIATLLSSSLRLYMFRSSSSLNRADD 313 (360)
T ss_pred ceeeeeeeecCCCCcceeeeEEEechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHhhccCCHHH
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999888777888
Q ss_pred HHHhhhccCCCcEEehhhhhhccChhHHHHHHHHHHHhccCC
Q psy8408 323 VSALIRRTQVGDFLLLHLLGQNMNNMFFGEILDELSTNLHLG 364 (393)
Q Consensus 323 i~~~~~~~~~dg~flL~~i~~N~g~lv~~elv~~L~~~~~~~ 364 (393)
++.+.++++.||||+||||++|+|+++++||+.+||++++++
T Consensus 314 ~~~v~~~l~~ddwFlL~~l~~N~~~~~~~eli~~L~~~~~~~ 355 (360)
T PHA02748 314 IAVVYNKLQIGDWFLLHMLRKNINPLAYKELISRLAQHFDVS 355 (360)
T ss_pred HHHHHHhCCcCCEEEhhHhhhhCChHHHHHHHHHHHHHcccc
Confidence 899999999999999999999999999999999999999755
No 2
>PF00876 Innexin: Innexin; InterPro: IPR000990 The pannexin family combines invertebrate gap junction proteins and their vertebrate homologs. These proteins have been named innexins []. Gap junctions are composed of membrane proteins, which form a channel permeable for ions and small molecules connecting cytoplasm of adjacent cells. Although gap junctions provide similar functions in all multicellular organisms, until recently it was believed that vertebrates and invertebrates use unrelated proteins for this purpose. While the connexins family of gap junction proteins is well- characterised in vertebrates, no homologs have been found in invertebrates. In turn, gap junction molecules with no sequence homology to connexins have been identified in insects and nematodes. It has been suggested that these proteins are specific invertebrate gap junctions, and they were thus named innexins (invertebrate analog of connexins) []. As innexin homologs were recently identified in other taxonomic groups including vertebrates, indicating their ubiquitous distribution in the animal kingdom, they were called pannexins (from the Latin pan-all, throughout, and nexus-connection, bond) [, , ]. Genomes of vertebrates carry probably a conserved set of 3 pannexin paralogs (PANX1, PANX2 and PANX3). Invertebrate genomes may contain more than a dozen pannexin (innexin) genes. Vinnexins, viral homologs of pannexins/innexins, were identified in Polydnaviruses that occur in obligate symbiotic associations with parasitoid wasps. It was suggested that virally encoded vinnexin proteins may function to alter gap junction proteins in infected host cells, possibly modifying cell-cell communication during encapsulation responses in parasitized insects [, ]. Structurally pannexins are simillar to connexins. Both types of protein consist of a cytoplasmic N-terminal domain, followed by four transmembrane segments that delimit two extracellular and one cytoplasmic loops; the C- terminal domain is cytoplasmic.; GO: 0005921 gap junction
Probab=100.00 E-value=2.7e-98 Score=749.25 Aligned_cols=326 Identities=33% Similarity=0.681 Sum_probs=297.5
Q ss_pred cccceeeehhhhHHHHHHHHHHHhhhhhcCCCeeeecCCCCC---cccccceeeeeeeeeecCCCCCCCCccccCCCCCC
Q psy8408 26 DNLVFRCHYRITSAMLFVSCVLVTANNLIGDPINCIADGAVP---GHVINTYCWITSTFTLPHQAHKPVGSHVIHPAVGS 102 (393)
Q Consensus 26 Dd~vdRL~y~~Tv~lL~~~s~lvs~kqy~G~PI~C~~P~~f~---~~y~~~yCwi~~Ty~vp~~~~~~~~~~~~~p~~~~ 102 (393)
||++|||||++||.+|+++|+++++|||||+||+||+|++|+ ++|+|+|||++|||++|.++..| |.++
T Consensus 1 Dd~~dRl~~~~Tv~lL~~~a~lv~~kqy~G~PI~C~~P~~f~~~~~~y~~~yCwi~~Ty~v~~~~~~~--------~~~~ 72 (348)
T PF00876_consen 1 DDFVDRLNYKYTVILLLFFALLVSAKQYFGSPIQCWVPAEFTGSWEEYANSYCWIQNTYFVPMNEDVP--------GTDP 72 (348)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHhcCCCceeeCCCCCCcchHhHHHhhhcccceEeccccccCC--------CCcc
Confidence 899999999999999999999999999999999999999999 69999999999999999888764 2222
Q ss_pred CCCCcccceeeeecchhHHHHHHHHHhhhhhhHHHh---hhccCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHhhc
Q psy8408 103 YVEGEDEKRYHTYYQWVPFMLFFQGILFYVPHWIWK---NLEENKVRMITDGMRGAIVTSKEDRRERQKRLVQYIIDTLH 179 (393)
Q Consensus 103 ~~~~~~~~~~i~YYQWVpfvL~lQA~lFylP~~iWk---~~~~~~l~~l~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~ 179 (393)
++.+.+++++++|||||||+|++||+|||+|+++|| ..+|+++++++++++++...+.++|+++++++++++.+.++
T Consensus 73 ~~~~~~~~~~i~YYQWVPfiL~lQA~lfylP~~iW~~~~~~~g~~l~~i~~~~~~~~~~~~~~r~~~~~~l~~~l~~~l~ 152 (348)
T PF00876_consen 73 EWRREREKREISYYQWVPFILLLQAILFYLPHLIWRLLNKWSGIDLKSIVEEADKAQNSDPEERKKKIEKLARYLERYLK 152 (348)
T ss_pred ccccccccceEeeehhhHHHHHHHHHHHHhHHHHHHHhhhccCccHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 112345788999999999999999999999999999 56789999999999988877668999999999999999998
Q ss_pred cccch--------hhhHHHHHHHHHHHHHHHHHHHHHHhCCccccchHHHHHhhccccCCcCCCCcccCCeeeeeeeeee
Q psy8408 180 MHNVY--------AAGYFFCEFLNFVNVVGNMILIDSFLGGTFFTYGTEVLKFTQLNQENRTDPMVEVFPRVTKCTFHKY 251 (393)
Q Consensus 180 ~~~~~--------~~~Y~~~K~L~l~Nvv~Q~~ll~~FLg~~~~~~G~~vl~~~~~~~~~~~~~~s~~FPRVT~Cdf~~~ 251 (393)
.|+.+ +..|++||+||++|+++|+++|++|||+++..||.+++.+. .++++|.+ +++|||||+|||++
T Consensus 153 ~~~~~~~~~g~~l~~~Yl~~K~L~l~n~i~Q~~ll~~fLg~~~~~~G~~~~~~~-~~g~~w~~--s~~FPrvt~Cdf~v- 228 (348)
T PF00876_consen 153 QHRRYKKRSGNYLTFLYLFCKLLYLINVIGQIFLLNAFLGGDFYFWGFEVLSDL-LNGRDWQE--SGVFPRVTFCDFEV- 228 (348)
T ss_pred hhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHHHHHHhh-hhhhhhcc--CCCCCCcceechhh-
Confidence 88766 99999999999999999999999999999999999999877 45788877 88999999999996
Q ss_pred cCCCCcceeeeeeeecccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhhccCC------hhhHHH
Q psy8408 252 GSSGSIQDHDALCILALNILNEKIYILLWFWFYALAIMSFGAICYSLSVITLPSIRETILIRRFRFGT------PAGVSA 325 (393)
Q Consensus 252 ~~~Gnv~~~tvqCvLpiN~~NEKIfifLWFW~v~l~vit~~~li~w~~~l~~~~~R~~~i~~~l~~~~------~~~i~~ 325 (393)
|.+|++|+||+|||||+||+|||||+|||||+++|+++|++|+++|+++++.++.|..+++++++..+ ++..++
T Consensus 229 r~lg~~~~~tvqCvL~iN~~NEKIfifLWfW~v~l~vit~~~~i~w~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 308 (348)
T PF00876_consen 229 RQLGNVQRHTVQCVLPINMFNEKIFIFLWFWFVFLAVITVLSLIYWIFRLFSPSSRRSFIKQLLRLADSFSPKDKRLLDR 308 (348)
T ss_pred hhcCCccceeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHhCCCccccchHHHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999887532 234566
Q ss_pred hh-hccCCCcEEehhhhhhccChhHHHHHHHHHHHhccC
Q psy8408 326 LI-RRTQVGDFLLLHLLGQNMNNMFFGEILDELSTNLHL 363 (393)
Q Consensus 326 ~~-~~~~~dg~flL~~i~~N~g~lv~~elv~~L~~~~~~ 363 (393)
++ +.++.||||+||||++|+|+++++|++++||++|++
T Consensus 309 fv~~~L~~Dg~flL~~i~~n~g~~v~~el~~~L~~~~~~ 347 (348)
T PF00876_consen 309 FVNDYLRPDGVFLLRLIAKNAGDIVARELVEELWERYKE 347 (348)
T ss_pred HHHhccCCCCEeHHHHHHHhCChHHHHHHHHHHHHHHhh
Confidence 66 668999999999999999999999999999999974
No 3
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=46.07 E-value=30 Score=24.87 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=22.9
Q ss_pred ecccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8408 266 LALNILNEKIYILLWFWFYALAIMSFGAICYS 297 (393)
Q Consensus 266 LpiN~~NEKIfifLWFW~v~l~vit~~~li~w 297 (393)
||-|+=|.+++.+.|+|+..+....=+-+++|
T Consensus 11 LPF~~~nk~~~~~~~~~ffg~GF~~PF~i~~~ 42 (46)
T cd00929 11 LPFSVTNKWRLTALFHLFFGSGFSAPFIVVRH 42 (46)
T ss_pred CCcccCccchHHHHHHHHHHHHHhhhHHHHHH
Confidence 89999999998888888666655544444443
No 4
>COG4478 Predicted membrane protein [Function unknown]
Probab=45.21 E-value=1e+02 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Q psy8408 275 IYILLWFWFYALAIMSFGAICYSLSVITLPSIR 307 (393)
Q Consensus 275 IfifLWFW~v~l~vit~~~li~w~~~l~~~~~R 307 (393)
+|++.|+|.+.++++-.+-+-+|++-+=..+.+
T Consensus 6 ~fi~s~~~ii~lsvllti~~~~~iy~~eI~~l~ 38 (210)
T COG4478 6 IFIFSLLIIIALSVLLTIFLAWWIYPLEIHSLQ 38 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 799999999999998888888888765444433
No 5
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=32.10 E-value=1.3e+02 Score=22.19 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=17.5
Q ss_pred hhhhhhHHHhhhccC-cHHHHHHhhhhhc
Q psy8408 129 LFYVPHWIWKNLEEN-KVRMITDGMRGAI 156 (393)
Q Consensus 129 lFylP~~iWk~~~~~-~l~~l~~~~~~~~ 156 (393)
+--.-..||+.++|+ .+..+++.+...-
T Consensus 15 Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~y 43 (68)
T PF05402_consen 15 LNETAAFIWELLDGPRTVEEIVDALAEEY 43 (68)
T ss_dssp --THHHHHHHH--SSS-HHHHHHHHHHHT
T ss_pred ccHHHHHHHHHccCCCCHHHHHHHHHHHc
Confidence 334567899999874 6888888876554
No 6
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=28.03 E-value=40 Score=30.47 Aligned_cols=22 Identities=36% Similarity=0.806 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHhhh
Q psy8408 118 WVPFMLFFQGILFYVPHWIWKNL 140 (393)
Q Consensus 118 WVpfvL~lQA~lFylP~~iWk~~ 140 (393)
|-|+++++-| .|-+|+++||++
T Consensus 136 ~~PlllF~~~-v~G~PyLi~Kli 157 (158)
T PF04088_consen 136 SKPLLLFLAA-VFGLPYLIWKLI 157 (158)
T ss_pred cccHHHHHHH-HHHHHHHHHHHh
Confidence 6799988877 899999999976
No 7
>MTH00171 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=16.64 E-value=1.5e+02 Score=21.30 Aligned_cols=15 Identities=27% Similarity=0.895 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy8408 275 IYILLWFWFYALAIM 289 (393)
Q Consensus 275 IfifLWFW~v~l~vi 289 (393)
.++|+++|+++++++
T Consensus 10 f~~~~~~W~~l~~~~ 24 (54)
T MTH00171 10 FFIFLFSWLIFLTLL 24 (54)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467888998888654
No 8
>PF08038 Tom7: TOM7 family; InterPro: IPR012621 This family consists of TOM7 family of mitochondrial import receptors. TOM7 forms part of the translocase of the outer mitochondrial membrane (TOM) complex and it appears to function as a modulator of the dynamics of the mitochondrial protein transport machinery by promoting the dissociation of subunits of the outer membrane translocase [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=15.87 E-value=98 Score=21.78 Aligned_cols=16 Identities=19% Similarity=0.640 Sum_probs=12.9
Q ss_pred ceeeeecchhHHHHHH
Q psy8408 110 KRYHTYYQWVPFMLFF 125 (393)
Q Consensus 110 ~~~i~YYQWVpfvL~l 125 (393)
.+.+..|-|+|+||.+
T Consensus 11 ~k~~~HyGfIP~Ilyl 26 (42)
T PF08038_consen 11 AKTVFHYGFIPLILYL 26 (42)
T ss_pred heeeEEeeehHHHHHH
Confidence 3567889999999865
No 9
>COG1981 Predicted membrane protein [Function unknown]
Probab=15.66 E-value=97 Score=27.68 Aligned_cols=25 Identities=32% Similarity=0.711 Sum_probs=18.8
Q ss_pred eecchhH-----HHHHHHHHhhhhhhHHHh
Q psy8408 114 TYYQWVP-----FMLFFQGILFYVPHWIWK 138 (393)
Q Consensus 114 ~YYQWVp-----fvL~lQA~lFylP~~iWk 138 (393)
.||-|+= ++..--|-+||+|+++=.
T Consensus 6 ~~y~W~KafHiiavisWmAglfYLPRlFVy 35 (149)
T COG1981 6 DYYLWVKAFHLIAVISWMAGLFYLPRLFVY 35 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788863 566677999999988743
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=15.33 E-value=1.1e+02 Score=26.38 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy8408 282 WFYALAIMSFG 292 (393)
Q Consensus 282 W~v~l~vit~~ 292 (393)
|.+|+++|.++
T Consensus 2 W~l~~iii~~i 12 (130)
T PF12273_consen 2 WVLFAIIIVAI 12 (130)
T ss_pred eeeHHHHHHHH
Confidence 44444444333
Done!