Query psy8408
Match_columns 393
No_of_seqs 138 out of 497
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 17:59:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nxg_A Major capsid protein VP 14.3 38 0.0013 31.6 0.1 11 56-67 178-188 (272)
2 3iys_A Major capsid protein VP 14.1 58 0.002 31.3 1.3 11 56-67 194-204 (343)
3 2kih_A Matrix protein 2; S31N, 11.9 2.6E+02 0.0091 18.5 3.6 28 285-312 12-39 (43)
4 1vps_A Polyomavirus VP1 pentam 11.1 50 0.0017 31.0 -0.2 11 56-67 191-201 (289)
5 3s7v_A Major capsid protein VP 10.9 51 0.0017 30.8 -0.2 11 56-67 187-197 (277)
6 4fmh_A VP1; viral capsid prote 10.5 54 0.0018 30.9 -0.2 11 56-67 195-205 (289)
7 3bmz_A Putative uncharacterize 10.4 1.2E+02 0.0041 26.5 2.0 21 58-78 18-38 (199)
8 1sva_1 Simian virus 40; virus 9.2 70 0.0024 31.0 0.1 11 56-67 203-213 (361)
9 1sid_A Polyomavirus coat prote 8.0 77 0.0026 30.8 -0.2 11 56-67 222-232 (383)
10 4a1x_C CP5-46-A peptide; hydro 5.6 1.6E+02 0.0056 17.2 0.4 8 56-63 16-23 (26)
No 1
>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein; 1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
Probab=14.25 E-value=38 Score=31.57 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=8.6
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 178 yPvE~W~p-DPs 188 (272)
T 3nxg_A 178 YPVECWVP-DPT 188 (272)
T ss_dssp SBGGGEEE-CTT
T ss_pred cceEEECC-CCC
Confidence 48999999 444
No 2
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=14.10 E-value=58 Score=31.26 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=8.5
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 194 yPVE~W~P-DPs 204 (343)
T 3iys_A 194 YPIECWCP-DPA 204 (343)
T ss_pred cceEEECC-CCC
Confidence 48999999 444
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=11.90 E-value=2.6e+02 Score=18.47 Aligned_cols=28 Identities=7% Similarity=-0.145 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHh
Q psy8408 285 ALAIMSFGAICYSLSVITLPSIRETILI 312 (393)
Q Consensus 285 ~l~vit~~~li~w~~~l~~~~~R~~~i~ 312 (393)
.-.++.++.++.|+.--++..+-.+.++
T Consensus 12 aa~iiGIlHLiLwildRlffkciyrrfk 39 (43)
T 2kih_A 12 AANIIGILHLILWILDRLFFKSIYRFFE 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457788889999875544444333333
No 4
>1vps_A Polyomavirus VP1 pentamer; virus coat protein, oligosaccharide binding, virus assembly, acid, viral protein; HET: SIA GAL NAG; 1.90A {Murine polyomavirus} SCOP: b.121.6.1 PDB: 1vpn_A* 1cn3_A
Probab=11.05 E-value=50 Score=31.00 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=8.5
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 191 yPVE~W~P-DPs 201 (289)
T 1vps_A 191 YPVEIWHP-DPA 201 (289)
T ss_dssp SBTTTEEE-CTT
T ss_pred cceEeEcC-CCC
Confidence 38999999 444
No 5
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=10.95 E-value=51 Score=30.79 Aligned_cols=11 Identities=9% Similarity=-0.000 Sum_probs=8.5
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 187 yPVE~W~p-DPs 197 (277)
T 3s7v_A 187 YSVESWAP-DPS 197 (277)
T ss_dssp CBTTTEEE-CTT
T ss_pred CceEEECC-CCC
Confidence 38999999 444
No 6
>4fmh_A VP1; viral capsid protein, jelly roll, encapsidation, receptor BI sialylated oligosaccharides, viral protein; HET: SIA GAL; 1.85A {Merkel cell polyomavirus} PDB: 4fmg_A* 4fmi_A* 4fmj_A*
Probab=10.49 E-value=54 Score=30.88 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=8.4
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 195 yPVE~W~P-DPs 205 (289)
T 4fmh_A 195 YPIEVWCP-DPS 205 (289)
T ss_dssp SBTTTEEE-CTT
T ss_pred cceEEECC-CCC
Confidence 38999999 444
No 7
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum} PDB: 2zf3_A 2zf4_A*
Probab=10.37 E-value=1.2e+02 Score=26.47 Aligned_cols=21 Identities=14% Similarity=0.504 Sum_probs=15.5
Q ss_pred eeeecCCCCCcccccceeeee
Q psy8408 58 INCIADGAVPGHVINTYCWIT 78 (393)
Q Consensus 58 I~C~~P~~f~~~y~~~yCwi~ 78 (393)
|+-|.|-+.+.+....|||.-
T Consensus 18 iSYW~PMq~dD~iTSGYCWFD 38 (199)
T 3bmz_A 18 VSYWSPMLPDDQLTSGYCWFD 38 (199)
T ss_dssp EEEEESCCTTCCCEEEEEEEE
T ss_pred hhhccCCCcccccccceeeee
Confidence 788999887766666666654
No 8
>1sva_1 Simian virus 40; virus coat protein, icosahedral virus; 3.10A {Simian virus 40} SCOP: b.121.6.1
Probab=9.22 E-value=70 Score=30.96 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=8.4
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 203 yPVE~W~p-DPs 213 (361)
T 1sva_1 203 YPVECWVP-DPS 213 (361)
T ss_dssp SBGGGEEE-CTT
T ss_pred cceEEECC-CCC
Confidence 38999999 444
No 9
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC; 3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Probab=8.02 E-value=77 Score=30.85 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=8.5
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 222 yPVE~W~P-DPs 232 (383)
T 1sid_A 222 YPVEIWHP-DPA 232 (383)
T ss_dssp SBTTTEEE-CCC
T ss_pred cceEEECC-CCC
Confidence 38999999 444
No 10
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=5.63 E-value=1.6e+02 Score=17.20 Aligned_cols=8 Identities=50% Similarity=1.045 Sum_probs=6.1
Q ss_pred CCeeeecC
Q psy8408 56 DPINCIAD 63 (393)
Q Consensus 56 ~PI~C~~P 63 (393)
+||+|-..
T Consensus 16 dpihcd~~ 23 (26)
T 4a1x_C 16 DPIHCDXX 23 (26)
T ss_pred Cceecccc
Confidence 78999754
Done!