Query psy8408
Match_columns 393
No_of_seqs 138 out of 497
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 17:59:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8408.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8408hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vpsa_ b.121.6.1 (A:) Polyoma 15.4 15 0.0011 32.3 -0.2 11 56-67 191-201 (285)
2 d1sva1_ b.121.6.1 (1:) Polyoma 9.1 45 0.0033 29.7 0.9 11 56-67 190-200 (348)
3 d1gxqa_ a.4.6.1 (A:) PhoB {Esc 8.9 35 0.0025 24.9 0.1 26 335-360 36-62 (105)
4 d1opca_ a.4.6.1 (A:) OmpR {Esc 7.0 42 0.0031 23.9 -0.2 25 336-360 31-56 (99)
5 d1ys7a1 a.4.6.1 (A:128-233) Tr 6.8 58 0.0042 23.6 0.5 26 335-360 38-64 (106)
6 d1d4ta_ d.93.1.1 (A:) The Xlp 5.7 65 0.0048 22.9 0.2 32 318-349 11-42 (104)
7 d1rxta1 d.108.1.2 (A:78-218) N 5.0 1.3E+02 0.0098 23.4 1.8 27 6-36 14-40 (141)
8 d1iyka1 d.108.1.2 (A:60-224) N 4.8 1.6E+02 0.012 23.5 2.2 28 6-37 36-63 (165)
9 d1jyra_ d.93.1.1 (A:) Growth f 4.8 82 0.006 22.4 0.3 30 318-347 10-39 (96)
10 d1j6ra_ d.173.1.2 (A:) Hypothe 4.8 88 0.0064 25.6 0.5 65 321-388 97-162 (197)
No 1
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Probab=15.44 E-value=15 Score=32.28 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=8.6
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 191 YpvE~W~P-DPS 201 (285)
T d1vpsa_ 191 YPVEIWHP-DPA 201 (285)
T ss_dssp SBTTTEEE-CTT
T ss_pred eeeEeECC-CCC
Confidence 48999999 444
No 2
>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=9.08 E-value=45 Score=29.74 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=8.5
Q ss_pred CCeeeecCCCCC
Q psy8408 56 DPINCIADGAVP 67 (393)
Q Consensus 56 ~PI~C~~P~~f~ 67 (393)
-||+||+| +.+
T Consensus 190 YpvE~W~P-DPS 200 (348)
T d1sva1_ 190 YPVECWVP-DPS 200 (348)
T ss_dssp SBGGGEEE-CTT
T ss_pred ceeeeECC-CCC
Confidence 38999999 444
No 3
>d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
Probab=8.90 E-value=35 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEehhhhhhccChhHHHH-HHHHHHHh
Q psy8408 335 FLLLHLLGQNMNNMFFGE-ILDELSTN 360 (393)
Q Consensus 335 ~flL~~i~~N~g~lv~~e-lv~~L~~~ 360 (393)
.-+|.++.+|.|.++.+| |++.+|..
T Consensus 36 ~~lL~~L~~~~g~vvsr~~L~~~vw~~ 62 (105)
T d1gxqa_ 36 FKLLHFFMTHPERVYSREQLLNHVWGT 62 (105)
T ss_dssp HHHHHHHHHSCSSEECHHHHHHHHTCS
T ss_pred HHHHHHHHhCccccccHHHHhccccCC
Confidence 468899999999999966 88899954
No 4
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Probab=6.96 E-value=42 Score=23.95 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=20.5
Q ss_pred EehhhhhhccChhHHHH-HHHHHHHh
Q psy8408 336 LLLHLLGQNMNNMFFGE-ILDELSTN 360 (393)
Q Consensus 336 flL~~i~~N~g~lv~~e-lv~~L~~~ 360 (393)
-+|.++..|.|.++++| |++.+|..
T Consensus 31 ~lL~~L~~~~g~~vsr~~L~~~vwg~ 56 (99)
T d1opca_ 31 AVLKALVSHPREPLSRDKLMNLARGR 56 (99)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHCCS
T ss_pred HHHHHHHhccceeccHHHHHHHhcCC
Confidence 47888899999999866 88899943
No 5
>d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.85 E-value=58 Score=23.58 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.0
Q ss_pred EEehhhhhhccChhHHHH-HHHHHHHh
Q psy8408 335 FLLLHLLGQNMNNMFFGE-ILDELSTN 360 (393)
Q Consensus 335 ~flL~~i~~N~g~lv~~e-lv~~L~~~ 360 (393)
.-+|+++..|.|.++.+| |++.+|..
T Consensus 38 ~~lL~~L~~~~g~~vsr~~L~~~vw~~ 64 (106)
T d1ys7a1 38 FDLLAVLAEHKTAVLSRAQLLELVWGY 64 (106)
T ss_dssp HHHHHHHHHTTTCCBCHHHHHHHHHCC
T ss_pred hHHHHHHhhhhhhhhhHHHHHhhhcCC
Confidence 467888889999998776 88999943
No 6
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.66 E-value=65 Score=22.86 Aligned_cols=32 Identities=13% Similarity=-0.094 Sum_probs=21.0
Q ss_pred CChhhHHHhhhccCCCcEEehhhhhhccChhH
Q psy8408 318 GTPAGVSALIRRTQVGDFLLLHLLGQNMNNMF 349 (393)
Q Consensus 318 ~~~~~i~~~~~~~~~dg~flL~~i~~N~g~lv 349 (393)
+++++.+.++++.+.||-||+|--..+.|..+
T Consensus 11 isR~eAe~lL~~~~~~G~FLVR~S~~~~g~~~ 42 (104)
T d1d4ta_ 11 ISRETGEKLLLATGLDGSYLLRDSESVPGVYC 42 (104)
T ss_dssp CCHHHHHHHHHHHCCTTEEEEEECSSSTTCEE
T ss_pred CCHHHHHHHHhhCCCCCeEEEEecCCCCCCEE
Confidence 45566666666656778888887666655543
No 7
>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.02 E-value=1.3e+02 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred HHHHhhhhhhhhcccccccccccceeeehhh
Q psy8408 6 MVSAMAGFVKVRYLMDKAIIDNLVFRCHYRI 36 (393)
Q Consensus 6 ~~~~l~~~l~~~~~~~~~~~Dd~vdRL~y~~ 36 (393)
.+..+-++|+-. .+.+||..+|++|.-
T Consensus 14 ~~~el~~lL~~n----YVeddd~~frf~Ys~ 40 (141)
T d1rxta1 14 VLKELYTLLNEN----YVEDDDNMFRFDYSP 40 (141)
T ss_dssp HHHHHHHHHHTS----SCCCCSSCCCBCCCH
T ss_pred HHHHHHHHHHHh----cccCCCceEEEEeCH
Confidence 467788888875 888999999999854
No 8
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=4.83 E-value=1.6e+02 Score=23.46 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=22.6
Q ss_pred HHHHhhhhhhhhcccccccccccceeeehhhh
Q psy8408 6 MVSAMAGFVKVRYLMDKAIIDNLVFRCHYRIT 37 (393)
Q Consensus 6 ~~~~l~~~l~~~~~~~~~~~Dd~vdRL~y~~T 37 (393)
.+..+-++|+-. .+.+||..+|.+|.--
T Consensus 36 ~l~ely~lL~~n----YVeDdd~~frf~YS~e 63 (165)
T d1iyka1 36 QLDELYKLLYDN----YVEDIDATFRFKYSHE 63 (165)
T ss_dssp HHHHHHHHHHHH----SCBCTTSSEEECCCHH
T ss_pred HHHHHHHHHHhh----cccCccceEEEecCHH
Confidence 466778888876 8889999999999643
No 9
>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.83 E-value=82 Score=22.40 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=19.8
Q ss_pred CChhhHHHhhhccCCCcEEehhhhhhccCh
Q psy8408 318 GTPAGVSALIRRTQVGDFLLLHLLGQNMNN 347 (393)
Q Consensus 318 ~~~~~i~~~~~~~~~dg~flL~~i~~N~g~ 347 (393)
+++.+.++++.+.+.||.||+|--..+.|.
T Consensus 10 isR~~Ae~lL~~~~~~G~FLvR~S~~~~g~ 39 (96)
T d1jyra_ 10 IPRAKAEEMLSKQRHDGAFLIRESESAPGD 39 (96)
T ss_dssp CCHHHHHHHHHTCCSTTBEEEEECSSSTTC
T ss_pred CCHHHHHHHHhhCCCCCeEEEEecCCCCCC
Confidence 455566666655556788888876666554
No 10
>d1j6ra_ d.173.1.2 (A:) Hypothetical protein TM0269 {Thermotoga maritima [TaxId: 2336]}
Probab=4.79 E-value=88 Score=25.61 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=29.5
Q ss_pred hhHHHhhhcc-CCCcEEehhhhhhccChhHHHHHHHHHHHhccCCCCCCCCCCccccCCCCCchhhhcc
Q psy8408 321 AGVSALIRRT-QVGDFLLLHLLGQNMNNMFFGEILDELSTNLHLGNNIPTAPSTLELSPIYPSDKLRLH 388 (393)
Q Consensus 321 ~~i~~~~~~~-~~dg~flL~~i~~N~g~lv~~elv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
..+++.++++ ..++. .=.++-+-++..++.++.+.+.++.+.. ..+.. -+.+-+|+||+-|...+
T Consensus 97 ~~id~~i~~~~~~~d~-~~a~~lda~a~~~~E~~~d~~~~~ir~~-~~~~~-~~~R~SPGY~d~pl~~q 162 (197)
T d1j6ra_ 97 KKVDEKIEEYFRKGED-LLAFFIDGIASEMVEYALRKVDAELRMK-RSNLE-GSFRISPGYGDLPLSLN 162 (197)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSC-BCCCBCTTSTTSCTTHH
T ss_pred hhHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc-CCcccCCCCCCCChhHH
Confidence 3566667664 33331 1122223334445555554444443321 11101 13457799997454433
Done!