RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8408
         (393 letters)



>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein,
           CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 99

 Score = 27.7 bits (62), Expect = 0.72
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 153 RGAIVTSKEDRRERQKRLV--QYIIDTLH 179
           R A V  K DRRE Q+RL   ++I   L 
Sbjct: 12  RHARVDVKYDRRELQRRLDVEKWIDGRLE 40


>d2jn4a1 b.173.1.1 (A:1-66) Uncharacterized protein FixU (NifT)
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 66

 Score = 26.6 bits (59), Expect = 1.00
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 3/32 (9%)

Query: 127 GILFYVPHWIWKNLEENKVRMITDGMRGAIVT 158
           G   YV     K+LEE  V M    + G  VT
Sbjct: 11  GHSAYVAK---KDLEELIVEMENPALWGGKVT 39


>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia
           coli [TaxId: 562]}
          Length = 140

 Score = 27.0 bits (59), Expect = 2.4
 Identities = 10/102 (9%), Positives = 26/102 (25%), Gaps = 7/102 (6%)

Query: 63  DGAVPGHVI--NTYCWITSTFTLPHQAHKPVGSHVIHPAVGSYVEGEDEKRYHTYYQWVP 120
           +G + G  +       +T            +  H +          +             
Sbjct: 40  NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGIIPPGGKRSVTL 99

Query: 121 FMLFFQGILFYVPHWIWKNLEENKVRMITDGMRGAIVTSKED 162
            +       ++ PH   K   +     +  G+ G +V   ++
Sbjct: 100 NVDQPAATCWFHPHQHGKTGRQ-----VAMGLAGLVVIEDDE 136


>d1nc7a_ b.123.1.1 (A:) Hypothetical protein TM1070 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 116

 Score = 26.2 bits (58), Expect = 3.3
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 252 GSSGSIQDHDALCILALNILNEKIYILLWFWF 283
           G  G +  H++LCI  +N  +E   I + F F
Sbjct: 18  GKRGYLVSHESLCI--MNTGDETAKIRITFLF 47


>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome
           bc1 complex (Ubiquinol-cytochrome c reductase),
           transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
          Length = 46

 Score = 24.6 bits (54), Expect = 3.7
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 105 EGEDEKRYHTYYQWVPFMLFFQGILFYVPHWIWKNLEENKV 145
           E +  KR     + +  M     +++ +    W  L+  K+
Sbjct: 2   EHDHRKR--MGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 40


>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase,
           C-terminal domain {Lactobacillus casei [TaxId: 1582]}
          Length = 129

 Score = 25.6 bits (55), Expect = 6.8
 Identities = 12/117 (10%), Positives = 29/117 (24%), Gaps = 15/117 (12%)

Query: 113 HTYYQWVPFMLFFQGILFYVPHWIWKNLEENKVRMITDGMRGA-----IVTSKEDRRERQ 167
           H        +   + +       I   L +     + D +  A     +V      R   
Sbjct: 20  HNPDGINGLITALKQLFSQPITVIAGILADKDYAAMADRLTAAFSTVYLVPVPGTPRALP 79

Query: 168 KRLVQYIIDTLHMHNVYAAGYFFCEFLNFVNVVGNMILIDSFLGGTFFTYGTEVLKF 224
           +   + + +     +   A       +         I+I     G+ +     V + 
Sbjct: 80  EAGYEALHEGRLKDSWQEALAASLNDVP-----DQPIVI----TGSLYLAS-AVRQT 126


>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 140

 Score = 25.5 bits (55), Expect = 8.5
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 104 VEGEDEKRYHTYYQWVPFMLFFQGILFYVPHWIWKNLEENKVRMITDGMRGAIVTSKEDR 163
           V+ +D      Y ++     F + +    P        EN++       +      +   
Sbjct: 29  VKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWF--DGQRAA 86

Query: 164 RERQKRLVQYIIDTLHMHNVYAAGYFFCEFL 194
             RQ  L +Y    + +    +      +F 
Sbjct: 87  ENRQGTLTEYCSTLMSLPTKISRCPHLLDFF 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,524,916
Number of extensions: 71884
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 21
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.1 bits)