Query psy8409
Match_columns 937
No_of_seqs 200 out of 580
Neff 2.5
Searched_HMMs 46136
Date Fri Aug 16 18:00:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2660|consensus 100.0 1.9E-43 4.1E-48 370.4 10.7 201 2-220 22-243 (331)
2 KOG0311|consensus 99.0 4E-11 8.6E-16 129.2 0.6 107 3-158 51-158 (381)
3 KOG2177|consensus 98.4 1.9E-07 4E-12 87.2 3.0 91 5-118 23-113 (386)
4 smart00504 Ubox Modified RING 98.2 9E-07 2E-11 71.6 3.6 48 9-60 14-61 (63)
5 TIGR00599 rad18 DNA repair pro 98.2 1.5E-06 3.2E-11 95.8 4.3 52 8-63 38-89 (397)
6 PF13923 zf-C3HC4_2: Zinc fing 97.9 3.1E-06 6.7E-11 64.7 1.3 34 3-36 6-39 (39)
7 KOG0287|consensus 97.9 8.1E-06 1.8E-10 89.0 3.2 52 7-62 34-85 (442)
8 PF15227 zf-C3HC4_4: zinc fing 97.9 5.9E-06 1.3E-10 65.2 1.6 28 9-36 11-42 (42)
9 PF14835 zf-RING_6: zf-RING of 97.9 5.5E-06 1.2E-10 72.3 1.5 52 2-59 14-65 (65)
10 PF04564 U-box: U-box domain; 97.8 1.2E-05 2.6E-10 69.1 3.0 51 9-63 17-68 (73)
11 PF13639 zf-RING_2: Ring finge 97.7 8.9E-06 1.9E-10 63.2 0.3 31 7-37 14-44 (44)
12 PF11816 DUF3337: Domain of un 97.7 8.8E-05 1.9E-09 79.4 7.4 68 131-199 247-330 (331)
13 TIGR00570 cdk7 CDK-activating 97.6 5E-05 1.1E-09 81.9 4.3 31 13-43 25-56 (309)
14 PF00097 zf-C3HC4: Zinc finger 97.6 2.6E-05 5.6E-10 59.3 1.5 31 6-36 9-41 (41)
15 cd00162 RING RING-finger (Real 97.5 5.4E-05 1.2E-09 55.6 1.9 33 7-39 11-44 (45)
16 COG5432 RAD18 RING-finger-cont 97.4 8.9E-05 1.9E-09 80.0 3.3 51 8-62 37-87 (391)
17 PF14634 zf-RING_5: zinc-RING 97.4 0.0001 2.3E-09 57.9 2.1 32 7-38 13-44 (44)
18 PF13920 zf-C3HC4_3: Zinc fing 97.3 9.4E-05 2E-09 59.1 1.4 34 8-41 14-48 (50)
19 PLN03208 E3 ubiquitin-protein 97.3 0.00013 2.7E-09 74.7 2.0 35 8-42 30-80 (193)
20 COG5222 Uncharacterized conser 97.2 0.00027 5.9E-09 76.6 3.4 59 2-63 281-340 (427)
21 smart00184 RING Ring finger. E 97.1 0.00032 6.9E-09 49.7 2.1 30 7-36 9-39 (39)
22 KOG4159|consensus 97.1 0.00028 6.1E-09 78.3 2.4 64 4-68 93-157 (398)
23 KOG2164|consensus 96.7 0.00068 1.5E-08 77.1 1.6 34 10-43 200-238 (513)
24 KOG0823|consensus 96.2 0.002 4.3E-08 67.6 1.7 35 7-41 58-95 (230)
25 PF12678 zf-rbx1: RING-H2 zinc 96.1 0.0026 5.7E-08 55.2 1.8 27 11-37 47-73 (73)
26 cd01611 GABARAP Ubiquitin doma 96.1 0.043 9.3E-07 52.0 9.9 86 108-199 23-109 (112)
27 KOG0802|consensus 96.1 0.0022 4.7E-08 72.8 1.6 35 6-40 306-340 (543)
28 cd01612 APG12_C Ubiquitin-like 96.0 0.028 6.2E-07 51.0 7.8 72 126-199 12-84 (87)
29 PF13445 zf-RING_UBOX: RING-ty 95.9 0.0037 7.9E-08 50.5 1.4 25 10-34 15-43 (43)
30 PTZ00380 microtubule-associate 95.7 0.057 1.2E-06 52.3 8.7 83 108-199 26-108 (121)
31 KOG0297|consensus 95.3 0.011 2.3E-07 65.4 2.7 57 3-62 29-85 (391)
32 PF02991 Atg8: Autophagy prote 95.3 0.18 3.9E-06 47.5 10.3 85 108-198 15-100 (104)
33 KOG1813|consensus 94.2 0.022 4.7E-07 62.0 1.7 36 8-43 253-288 (313)
34 PF04110 APG12: Ubiquitin-like 93.8 0.2 4.4E-06 46.2 6.9 72 126-199 12-84 (87)
35 PF00240 ubiquitin: Ubiquitin 93.7 0.22 4.8E-06 41.1 6.3 58 132-194 8-65 (69)
36 smart00213 UBQ Ubiquitin homol 93.6 0.16 3.4E-06 40.4 5.1 47 132-179 12-58 (64)
37 KOG1039|consensus 93.5 0.038 8.2E-07 61.0 2.0 36 10-45 183-225 (344)
38 PF11789 zf-Nse: Zinc-finger o 93.2 0.034 7.3E-07 47.2 0.7 32 4-35 20-53 (57)
39 KOG1654|consensus 93.1 0.47 1E-05 46.1 8.2 84 108-196 27-110 (116)
40 KOG1002|consensus 92.8 0.045 9.8E-07 63.4 1.2 32 10-41 550-586 (791)
41 KOG0824|consensus 92.5 0.077 1.7E-06 58.1 2.5 48 10-65 21-69 (324)
42 cd01798 parkin_N amino-termina 92.0 0.32 6.9E-06 41.0 5.0 46 132-178 11-56 (70)
43 KOG4185|consensus 91.9 0.11 2.5E-06 54.1 2.8 54 9-62 22-77 (296)
44 PF12861 zf-Apc11: Anaphase-pr 91.7 0.11 2.3E-06 48.0 2.1 28 13-40 51-81 (85)
45 cd01805 RAD23_N Ubiquitin-like 91.4 0.48 1E-05 40.1 5.5 47 132-178 13-60 (77)
46 cd01791 Ubl5 UBL5 ubiquitin-li 91.0 0.67 1.5E-05 40.6 6.2 60 132-196 14-73 (73)
47 KOG0825|consensus 90.7 0.11 2.4E-06 62.5 1.4 36 11-46 141-176 (1134)
48 cd01807 GDX_N ubiquitin-like d 90.4 0.51 1.1E-05 40.3 4.9 45 133-178 14-58 (74)
49 cd01769 UBL Ubiquitin-like dom 89.7 0.64 1.4E-05 37.4 4.7 45 133-178 11-55 (69)
50 COG5243 HRD1 HRD ubiquitin lig 89.5 0.2 4.4E-06 56.4 2.2 36 5-40 309-344 (491)
51 cd01803 Ubiquitin Ubiquitin. U 88.4 0.92 2E-05 37.8 4.9 60 133-197 14-73 (76)
52 cd01794 DC_UbP_C dendritic cel 88.3 0.92 2E-05 39.2 4.9 46 132-178 11-56 (70)
53 PF13764 E3_UbLigase_R4: E3 ub 88.2 0.7 1.5E-05 56.1 5.6 60 140-200 15-81 (802)
54 cd01809 Scythe_N Ubiquitin-lik 87.9 1.1 2.4E-05 37.0 5.0 45 133-178 14-58 (72)
55 cd01796 DDI1_N DNA damage indu 87.7 0.99 2.1E-05 38.7 4.7 45 133-178 13-58 (71)
56 KOG4628|consensus 87.6 0.26 5.6E-06 54.9 1.4 33 11-43 247-280 (348)
57 KOG4739|consensus 86.9 0.34 7.5E-06 51.5 1.8 50 9-66 18-67 (233)
58 cd01793 Fubi Fubi ubiquitin-li 86.8 1.3 2.8E-05 37.9 4.9 61 132-197 11-71 (74)
59 cd01806 Nedd8 Nebb8-like ubiq 86.6 1.5 3.2E-05 36.6 5.1 44 134-178 15-58 (76)
60 PF11976 Rad60-SLD: Ubiquitin- 86.3 1.7 3.8E-05 36.4 5.4 49 131-179 12-60 (72)
61 KOG1001|consensus 85.9 0.27 5.9E-06 58.4 0.6 39 6-44 463-503 (674)
62 cd01810 ISG15_repeat2 ISG15 ub 85.6 1.7 3.6E-05 37.3 5.0 60 133-197 12-71 (74)
63 cd01808 hPLIC_N Ubiquitin-like 84.8 1.9 4.1E-05 36.6 4.9 45 133-178 13-57 (71)
64 cd01812 BAG1_N Ubiquitin-like 84.6 1.6 3.4E-05 36.2 4.3 44 134-178 14-57 (71)
65 PTZ00044 ubiquitin; Provisiona 84.6 1.8 4E-05 36.6 4.8 46 132-178 13-58 (76)
66 KOG3800|consensus 83.6 0.89 1.9E-05 49.9 3.1 31 13-43 22-53 (300)
67 cd01815 BMSC_UbP_N Ubiquitin-l 82.8 1.7 3.6E-05 39.4 4.0 42 137-178 18-61 (75)
68 cd01804 midnolin_N Ubiquitin-l 82.8 2.1 4.5E-05 37.5 4.5 59 132-196 14-72 (78)
69 cd01802 AN1_N ubiquitin-like d 82.3 2.5 5.5E-05 39.3 5.1 46 132-178 40-85 (103)
70 KOG0827|consensus 81.8 0.72 1.6E-05 52.4 1.6 38 6-43 18-58 (465)
71 PF14447 Prok-RING_4: Prokaryo 78.5 1 2.3E-05 39.0 1.2 36 6-43 17-52 (55)
72 KOG1785|consensus 77.5 1.4 3E-05 50.4 2.1 37 8-44 381-419 (563)
73 cd01790 Herp_N Homocysteine-re 77.2 4.3 9.4E-05 36.9 4.7 60 134-195 18-78 (79)
74 cd00196 UBQ Ubiquitin-like pro 75.5 7.2 0.00016 28.1 4.8 45 131-176 9-53 (69)
75 KOG1493|consensus 75.4 1.1 2.4E-05 41.5 0.5 28 13-40 50-80 (84)
76 cd01792 ISG15_repeat1 ISG15 ub 75.4 4.3 9.4E-05 35.4 4.2 45 133-178 16-62 (80)
77 PF04641 Rtf2: Rtf2 RING-finge 74.9 2.4 5.2E-05 44.7 2.9 33 10-43 131-163 (260)
78 cd01763 Sumo Small ubiquitin-r 73.6 17 0.00036 32.5 7.4 50 129-179 21-70 (87)
79 cd01797 NIRF_N amino-terminal 73.3 5.7 0.00012 35.1 4.4 42 136-178 19-60 (78)
80 KOG3439|consensus 73.0 29 0.00063 34.3 9.3 73 125-199 40-113 (116)
81 PF13881 Rad60-SLD_2: Ubiquiti 72.3 7.2 0.00016 37.2 5.1 48 132-179 16-69 (111)
82 KOG0308|consensus 71.7 2.2 4.8E-05 51.1 1.9 40 160-200 668-721 (735)
83 KOG1814|consensus 71.5 1.8 3.8E-05 49.6 1.1 44 9-60 200-251 (445)
84 cd01800 SF3a120_C Ubiquitin-li 68.9 10 0.00023 32.8 5.0 60 134-198 12-71 (76)
85 KOG2932|consensus 68.6 2.2 4.7E-05 47.7 0.9 29 10-40 105-133 (389)
86 cd01813 UBP_N UBP ubiquitin pr 65.5 10 0.00022 33.3 4.2 46 134-179 14-61 (74)
87 PF10302 DUF2407: DUF2407 ubiq 64.3 14 0.0003 34.6 5.2 46 137-182 21-67 (97)
88 COG5194 APC11 Component of SCF 63.1 5.2 0.00011 37.5 2.1 30 13-42 53-82 (88)
89 PF14570 zf-RING_4: RING/Ubox 61.8 6 0.00013 33.6 2.1 28 12-39 18-46 (48)
90 PHA03096 p28-like protein; Pro 61.5 4.4 9.6E-05 44.2 1.6 30 9-38 199-231 (284)
91 TIGR00601 rad23 UV excision re 59.4 14 0.0003 41.8 5.0 46 132-178 13-61 (378)
92 KOG3039|consensus 59.2 6.3 0.00014 43.1 2.3 32 11-42 240-271 (303)
93 KOG4172|consensus 58.8 5 0.00011 35.5 1.2 29 12-40 23-53 (62)
94 KOG4692|consensus 57.4 5.7 0.00012 45.2 1.6 31 10-40 436-466 (489)
95 cd01814 NTGP5 Ubiquitin-like N 56.6 23 0.00049 34.7 5.3 46 134-179 20-71 (113)
96 KOG0298|consensus 56.5 4 8.7E-05 52.0 0.3 39 2-40 1160-1198(1394)
97 KOG0804|consensus 50.2 7.2 0.00016 45.4 1.0 28 11-40 194-221 (493)
98 KOG1645|consensus 50.1 6.9 0.00015 45.1 0.9 44 9-56 22-67 (463)
99 KOG2930|consensus 49.3 9.7 0.00021 37.2 1.6 28 13-40 80-107 (114)
100 cd01788 ElonginB Ubiquitin-lik 47.8 25 0.00055 34.8 4.1 66 131-197 13-81 (119)
101 cd01799 Hoil1_N Ubiquitin-like 46.8 70 0.0015 28.4 6.4 58 132-195 15-73 (75)
102 PF00788 RA: Ras association ( 46.4 1.6E+02 0.0034 25.3 8.4 68 130-199 17-92 (93)
103 KOG1812|consensus 46.4 9 0.0002 43.1 1.0 21 9-29 163-183 (384)
104 PF03854 zf-P11: P-11 zinc fin 46.4 10 0.00022 32.7 1.1 31 11-41 15-46 (50)
105 KOG4362|consensus 45.8 9.5 0.00021 46.2 1.1 39 5-43 30-71 (684)
106 cd01795 USP48_C USP ubiquitin- 44.7 40 0.00086 33.0 4.8 76 132-214 17-93 (107)
107 COG5220 TFB3 Cdk activating ki 43.3 9.8 0.00021 41.6 0.7 32 12-43 32-66 (314)
108 PF09379 FERM_N: FERM N-termin 43.3 99 0.0021 26.3 6.6 63 132-198 9-77 (80)
109 KOG1941|consensus 40.2 12 0.00026 43.3 0.8 32 7-38 380-413 (518)
110 PF06844 DUF1244: Protein of u 36.0 18 0.00039 32.9 1.1 14 16-29 10-23 (68)
111 KOG0010|consensus 35.6 36 0.00077 40.2 3.6 46 131-177 26-71 (493)
112 cd01789 Alp11_N Ubiquitin-like 35.1 67 0.0015 28.8 4.5 43 134-176 17-65 (84)
113 PF13240 zinc_ribbon_2: zinc-r 33.3 9.7 0.00021 27.7 -0.8 22 18-39 1-22 (23)
114 KOG1815|consensus 31.8 22 0.00047 40.4 1.1 34 9-42 84-127 (444)
115 PF06906 DUF1272: Protein of u 30.8 40 0.00086 29.9 2.3 23 17-41 30-52 (57)
116 cd06406 PB1_P67 A PB1 domain i 30.7 1.3E+02 0.0028 28.1 5.6 58 133-196 14-78 (80)
117 KOG1734|consensus 30.4 21 0.00045 39.8 0.6 40 3-43 242-283 (328)
118 COG3813 Uncharacterized protei 30.2 37 0.0008 31.7 2.1 25 15-41 28-52 (84)
119 cd01801 Tsc13_N Ubiquitin-like 28.9 97 0.0021 27.0 4.4 42 137-178 20-63 (77)
120 COG4640 Predicted membrane pro 27.3 23 0.0005 41.0 0.4 39 17-59 2-40 (465)
121 KOG0825|consensus 26.9 26 0.00057 43.5 0.8 26 13-38 120-151 (1134)
122 TIGR01682 moaD molybdopterin c 23.8 1.5E+02 0.0033 25.8 4.7 46 133-178 19-67 (80)
123 PF13248 zf-ribbon_3: zinc-rib 23.8 18 0.00039 26.5 -0.9 22 18-39 4-25 (26)
124 KOG4445|consensus 22.9 18 0.00039 40.7 -1.5 22 7-28 129-150 (368)
125 smart00295 B41 Band 4.1 homolo 21.1 3.4E+02 0.0075 26.2 7.0 65 131-200 15-85 (207)
126 COG5236 Uncharacterized conser 21.1 55 0.0012 37.7 1.8 30 10-39 75-106 (493)
127 KOG0006|consensus 20.8 1.2E+02 0.0027 34.8 4.3 41 136-177 20-60 (446)
128 PRK14559 putative protein seri 20.2 59 0.0013 39.3 1.9 47 17-65 16-65 (645)
No 1
>KOG2660|consensus
Probab=100.00 E-value=1.9e-43 Score=370.35 Aligned_cols=201 Identities=38% Similarity=0.694 Sum_probs=168.5
Q ss_pred cccccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhcCCchhhhHHhHhhhcccC
Q psy8409 2 TTILHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGLYEKEMQRRQMFFSST 81 (937)
Q Consensus 2 ~aLLhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL~esEmeRRREFYkKh 81 (937)
.|.|.+|.++.+|+|||||+||++||+.+++||+|+..+|+++|+++|+.|++||+|||||||+|+++|++|+++||+++
T Consensus 22 ~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE~k~~rdFy~~~ 101 (331)
T KOG2660|consen 22 GGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQEREMKRRRDFYKSR 101 (331)
T ss_pred cceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHHHHHHHHHHHhC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCccCcccC-------------------CCCCCCCCCCeeEEEEEccCCCCcccccccccceEEecCCccH
Q psy8409 82 PIQNSLGLTGEDKGIITE-------------------SSDIILPDENISITLEYLAHSSDDINKAVYGRRYLRCKASAPV 142 (937)
Q Consensus 82 g~qesqsaSPEErGE~~D-------------------dlkLFC~DDQISLCLEC~sSredd~nlk~L~KRYLRCSArATV 142 (937)
+..+.+....+++++..+ +...+..|.++.+++++... .++.+.++||||++++||
T Consensus 102 ~~~d~~~~~~~~~~~~~~~ek~~~t~~~~~s~~l~~~~~~~~r~d~~~~~~~~e~~~-----~~k~l~~~fvrcsa~~Tv 176 (331)
T KOG2660|consen 102 PLVDVPAGDTPERGHVLGEEKVPDTSDEIASLSLEVEDFKQNRLDEQVSVGLDEGKD-----TLKDLVRRFLRCSAAATV 176 (331)
T ss_pred CCcccCCCCCcccccccCcccCCCchhhhhccccchhhcccchhhhhhhcCCCcccc-----cccccccceEeccHHHHH
Confidence 843332222221211111 11233445555554443322 355677999999999999
Q ss_pred HHHHHHHHHHcC-CCCCceEEEEECCeecCCCCchhhHHhhhccC-CCCCeEEEEEeeecccccccchHHhhhhcccccc
Q psy8409 143 SILHKFLKNKFN-LSNKHCVELVCNNEQLTQNISVMDVAYIYQWK-KKTPMYLGYRILETKIKRISETEEAENSKRLKLS 220 (937)
Q Consensus 143 sHLKKFLAkKLd-Lpse~EVEILCnGEpL~ddyTLMDfAyIYrWR-RksPMvL~YRIke~sikpip~~e~aE~~krlkls 220 (937)
.||+|||+.|++ ++...+|||+|+|++|++++|||+|+++++|+ +++||+|+||+.+. +++++|.
T Consensus 177 ~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p~-------------v~~~~L~ 243 (331)
T KOG2660|consen 177 NHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVKPK-------------VSRLKLT 243 (331)
T ss_pred HHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEeccccc-------------cccceee
Confidence 999999999999 88999999999999999999999999999999 89999999999977 7788887
No 2
>KOG0311|consensus
Probab=99.04 E-value=4e-11 Score=129.18 Aligned_cols=107 Identities=21% Similarity=0.375 Sum_probs=84.9
Q ss_pred ccccccCCccccCCcchHHhHHHHhcC-CCCCccccccccccCCCCCCCCchhhHHHHHHhcCCchhhhHHhHhhhcccC
Q psy8409 3 TILHKSGPKLFFSFPVCKTCIVKYLKR-HKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGLYEKEMQRRQMFFSST 81 (937)
Q Consensus 3 aLLhkt~tTLECLHSFCKSCIvKyLE~-sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL~esEmeRRREFYkKh 81 (937)
.||++||++.+|||.||..||.+.+.. ++.||.||+.+...+ .|+.|..+..||++++|+....|+.+.+.
T Consensus 51 ~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr---sLr~Dp~fdaLis~i~~sie~~e~~q~~~----- 122 (381)
T KOG0311|consen 51 SLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR---SLRIDPNFDALISKIYPSIEEYEAPQPRF----- 122 (381)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc---cCCCCccHHHHHHHHhccHHHHhccchhH-----
Confidence 589999999999999999999999987 489999999996654 79999999999999999954443322110
Q ss_pred CccCCCCCCCCccCcccCCCCCCCCCCCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCC
Q psy8409 82 PIQNSLGLTGEDKGIITESSDIILPDENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNK 158 (937)
Q Consensus 82 g~qesqsaSPEErGE~~DdlkLFC~DDQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse 158 (937)
+. + .....++||..+...-+.|+..||.+++.+...
T Consensus 123 ----------------------~e-k------------------d~~~~~q~i~~si~~~~~~qs~~~~kr~a~~~~ 158 (381)
T KOG0311|consen 123 ----------------------ME-K------------------DDSAQIQYIKTSINAAVDHQSSYLTKRKALEEL 158 (381)
T ss_pred ----------------------Hh-h------------------HHHHhHHHHhhhHHHHHhhhhhhhhhhhccccc
Confidence 00 0 012233599999999999999999999988754
No 3
>KOG2177|consensus
Probab=98.38 E-value=1.9e-07 Score=87.21 Aligned_cols=91 Identities=14% Similarity=0.332 Sum_probs=60.3
Q ss_pred ccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhcCCchhhhHHhHhhhcccCCcc
Q psy8409 5 LHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGLYEKEMQRRQMFFSSTPIQ 84 (937)
Q Consensus 5 Lhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL~esEmeRRREFYkKhg~q 84 (937)
+.+. .++.|||+||+.||...|.....||.||. ... +++++..|.+++..+-.............++..|
T Consensus 23 ~~~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-----~~~~n~~l~~~~~~~~~~~~~~~~~~~~~~c~~~--- 92 (386)
T KOG2177|consen 23 FREP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-----NLRPNVLLANLVERLRQLRLSRPLGSKEELCEKH--- 92 (386)
T ss_pred hhcC-ccccccchHhHHHHHHhcCCCcCCcccCC-chh-----ccCccHHHHHHHHHHHhcCCcccccccchhhhhc---
Confidence 3444 78899999999999999995578999995 322 6789999999998763221100000000011111
Q ss_pred CCCCCCCCccCcccCCCCCCCCCCCeeEEEEEcc
Q psy8409 85 NSLGLTGEDKGIITESSDIILPDENISITLEYLA 118 (937)
Q Consensus 85 esqsaSPEErGE~~DdlkLFC~DDQISLCLEC~s 118 (937)
++ ...+||.++...+|..|..
T Consensus 93 ----------~~---~~~~~c~~~~~~~c~~c~~ 113 (386)
T KOG2177|consen 93 ----------GE---ELKLFCEEDEKLLCVLCRE 113 (386)
T ss_pred ----------CC---cceEEecccccccCCCCCC
Confidence 22 2578999999999988873
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.24 E-value=9e-07 Score=71.61 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=41.3
Q ss_pred CCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHH
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVY 60 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVy 60 (937)
..++.|||+|||.||.+|+.....||.|+..+... ++++|..|++.|.
T Consensus 14 Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~----~l~~~~~l~~~i~ 61 (63)
T smart00504 14 PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHE----DLIPNLALKSAIQ 61 (63)
T ss_pred CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChh----hceeCHHHHHHHH
Confidence 46779999999999999998888899999988433 6889999988875
No 5
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=1.5e-06 Score=95.84 Aligned_cols=52 Identities=19% Similarity=0.383 Sum_probs=44.4
Q ss_pred cCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 8 SGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 8 t~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
...++.|||+||..||..+|.....||+|+..+... .++.|..|++||..+.
T Consensus 38 ~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~----~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 38 VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES----KLRSNWLVSEIVESFK 89 (397)
T ss_pred CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc----cCccchHHHHHHHHHH
Confidence 345789999999999999998877899999987543 6899999999998663
No 6
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.95 E-value=3.1e-06 Score=64.67 Aligned_cols=34 Identities=32% Similarity=0.688 Sum_probs=28.1
Q ss_pred ccccccCCccccCCcchHHhHHHHhcCCCCCccc
Q psy8409 3 TILHKSGPKLFFSFPVCKTCIVKYLKRHKYCPIC 36 (937)
Q Consensus 3 aLLhkt~tTLECLHSFCKSCIvKyLE~sksCPvC 36 (937)
..+.+....+.|||+||+.||.++++....||.|
T Consensus 6 ~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 6 DELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp SB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 3556666789999999999999999998899998
No 7
>KOG0287|consensus
Probab=97.87 E-value=8.1e-06 Score=89.01 Aligned_cols=52 Identities=29% Similarity=0.489 Sum_probs=45.3
Q ss_pred ccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
++.-++.|+|+||.-||.+|+.....||.|+..+.++ .||-++.|.+||..+
T Consensus 34 ~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es----~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 34 NIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES----DLRNNRILDEIVKSL 85 (442)
T ss_pred cCceeccccchHHHHHHHHHhccCCCCCceecccchh----hhhhhhHHHHHHHHH
Confidence 3445667999999999999999989999999999776 699999999999654
No 8
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.87 E-value=5.9e-06 Score=65.24 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=21.2
Q ss_pred CCccccCCcchHHhHHHHhcCC----CCCccc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH----KYCPIC 36 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s----ksCPvC 36 (937)
..+++|||+||++||.++|+.. ..||+|
T Consensus 11 Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 11 PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 3568999999999999999874 369998
No 9
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.86 E-value=5.5e-06 Score=72.30 Aligned_cols=52 Identities=19% Similarity=0.409 Sum_probs=27.3
Q ss_pred cccccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHH
Q psy8409 2 TTILHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVV 59 (937)
Q Consensus 2 ~aLLhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIV 59 (937)
+.+|++...+-.|.|.||+.||...+. ..||+|...-... +++.|++|++||
T Consensus 14 ~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q----D~~~NrqLd~~i 65 (65)
T PF14835_consen 14 FDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ----DIQINRQLDSMI 65 (65)
T ss_dssp -S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S----S----HHHHHHH
T ss_pred HHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH----HHHhhhhhhccC
Confidence 367888888999999999999987665 3599999876443 799999999986
No 10
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.83 E-value=1.2e-05 Score=69.11 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=40.5
Q ss_pred CCccccCCcchHHhHHHHhcC-CCCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKR-HKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~-sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
..++.|||+|||+||.+|+.. ...||.|+..+... .+.+|..|++.|..++
T Consensus 17 PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~----~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 17 PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES----DLIPNRALKSAIEEWC 68 (73)
T ss_dssp EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG----GSEE-HHHHHHHHHHH
T ss_pred ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc----cceECHHHHHHHHHHH
Confidence 346789999999999999998 68999999988654 6999999999998763
No 11
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.71 E-value=8.9e-06 Score=63.19 Aligned_cols=31 Identities=32% Similarity=0.697 Sum_probs=26.6
Q ss_pred ccCCccccCCcchHHhHHHHhcCCCCCcccc
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLKRHKYCPICD 37 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE~sksCPvCR 37 (937)
+....+.|+|.||++||.+|+.....||+||
T Consensus 14 ~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 14 EKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp SCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 4455778999999999999999989999997
No 12
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=97.68 E-value=8.8e-05 Score=79.37 Aligned_cols=68 Identities=22% Similarity=0.421 Sum_probs=56.9
Q ss_pred cceEEecC--CccHHHHHHHHHHHc--------------CCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEE
Q psy8409 131 RRYLRCKA--SAPVSILHKFLKNKF--------------NLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLG 194 (937)
Q Consensus 131 KRYLRCSA--rATVsHLKKFLAkKL--------------dLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~ 194 (937)
.-..|+.| .+.|.=+.-||+.|| .+..+..|||+|+|++|+.++||.- +.-+.||..+-|+|+
T Consensus 247 ~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaT-Vr~~~WK~~~di~L~ 325 (331)
T PF11816_consen 247 EGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLAT-VRTFIWKSSGDIVLH 325 (331)
T ss_pred cccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHH-HHHhhccCCCeEEEE
Confidence 34556666 889999999999999 2234568999999999999999954 577899999999999
Q ss_pred EEeee
Q psy8409 195 YRILE 199 (937)
Q Consensus 195 YRIke 199 (937)
||++.
T Consensus 326 YR~k~ 330 (331)
T PF11816_consen 326 YRRKG 330 (331)
T ss_pred EEecC
Confidence 99864
No 13
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.61 E-value=5e-05 Score=81.93 Aligned_cols=31 Identities=26% Similarity=0.644 Sum_probs=27.2
Q ss_pred ccCCcchHHhHHHHhcCC-CCCcccccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRH-KYCPICDVLVYKT 43 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkS 43 (937)
+|||.||++||.+.|... ..||.|+..+.+.
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 899999999999999765 5799999988654
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.60 E-value=2.6e-05 Score=59.27 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=25.7
Q ss_pred cccCCccccCCcchHHhHHHHhc--CCCCCccc
Q psy8409 6 HKSGPKLFFSFPVCKTCIVKYLK--RHKYCPIC 36 (937)
Q Consensus 6 hkt~tTLECLHSFCKSCIvKyLE--~sksCPvC 36 (937)
.+...+++|||+||+.||.++|+ ....||.|
T Consensus 9 ~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 9 EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 33445899999999999999999 34679998
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.49 E-value=5.4e-05 Score=55.60 Aligned_cols=33 Identities=30% Similarity=0.660 Sum_probs=27.2
Q ss_pred ccCCccccCCcchHHhHHHHhcC-CCCCcccccc
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLKR-HKYCPICDVL 39 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE~-sksCPvCRk~ 39 (937)
+...+..|+|.||+.|+.+++.. ...||.|+..
T Consensus 11 ~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 11 EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 44455569999999999999987 5789999964
No 16
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.42 E-value=8.9e-05 Score=79.95 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=42.5
Q ss_pred cCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 8 SGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 8 t~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
+.-.+.|||+||.-||.+|+.....||+||....++ -+|-+.-+.+|++.+
T Consensus 37 ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es----rlr~~s~~~ei~es~ 87 (391)
T COG5432 37 IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES----RLRGSSGSREINESH 87 (391)
T ss_pred cceecccccchhHHHHHHHhcCCCCCccccccHHhh----hcccchhHHHHHHhh
Confidence 445678999999999999999989999999887666 377888888888543
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.35 E-value=0.0001 Score=57.90 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=27.6
Q ss_pred ccCCccccCCcchHHhHHHHhcCCCCCccccc
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLKRHKYCPICDV 38 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE~sksCPvCRk 38 (937)
..+.++.|||+||..||.+.......||+|++
T Consensus 13 ~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 13 RRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 45678999999999999999855678999984
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.31 E-value=9.4e-05 Score=59.06 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=29.4
Q ss_pred cCCccccCCc-chHHhHHHHhcCCCCCcccccccc
Q psy8409 8 SGPKLFFSFP-VCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 8 t~tTLECLHS-FCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
....+.|||. ||..|+.+++.....||.||+.+.
T Consensus 14 ~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 14 DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 3567799999 999999999998899999998773
No 19
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.26 E-value=0.00013 Score=74.66 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=27.3
Q ss_pred cCCccccCCcchHHhHHHHhcC----------------CCCCccccccccc
Q psy8409 8 SGPKLFFSFPVCKTCIVKYLKR----------------HKYCPICDVLVYK 42 (937)
Q Consensus 8 t~tTLECLHSFCKSCIvKyLE~----------------sksCPvCRk~Ihk 42 (937)
...++.|||.||+.||.+|+.. ...||+|+..+..
T Consensus 30 dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 30 DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3456789999999999998742 1469999988743
No 20
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.16 E-value=0.00027 Score=76.60 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=48.7
Q ss_pred cccccccCCccccCCcchHHhHHHHhcCC-CCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 2 TTILHKSGPKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 2 ~aLLhkt~tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
|.||++.+.+.-|+|+||..||...+.++ ..||.|.+ +.-.|..|.+|...+.=|++++
T Consensus 281 ~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r---kdvlld~l~pD~dk~~EvE~~l 340 (427)
T COG5222 281 HCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR---KDVLLDGLTPDIDKKLEVEKAL 340 (427)
T ss_pred hhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc---ccchhhccCccHHHHHHHHHHH
Confidence 68999999999999999999999887764 88999986 2334456888888888887775
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.08 E-value=0.00032 Score=49.72 Aligned_cols=30 Identities=40% Similarity=0.843 Sum_probs=24.9
Q ss_pred ccCCccccCCcchHHhHHHHhc-CCCCCccc
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLK-RHKYCPIC 36 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE-~sksCPvC 36 (937)
+....+.|+|.||..|+.+++. ....||+|
T Consensus 9 ~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 9 KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 3456678999999999999998 44679988
No 22
>KOG4159|consensus
Probab=97.06 E-value=0.00028 Score=78.34 Aligned_cols=64 Identities=17% Similarity=0.313 Sum_probs=48.0
Q ss_pred cccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCC-CchhhHHHHHHhcCCchh
Q psy8409 4 ILHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIR-PDTRLQNVVYKLIPGLYE 68 (937)
Q Consensus 4 LLhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLR-pDrTLQdIVyKLVPgL~e 68 (937)
+|.+.. +++|||+||..||.+.++....||.||..+++..-+.... +++.++.++.+++++...
T Consensus 93 ~l~~pv-~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 93 ALYPPV-VTPCGHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSSS 157 (398)
T ss_pred hcCCCc-cccccccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 344444 4499999999999999998899999999987643322222 377777888888887754
No 23
>KOG2164|consensus
Probab=96.68 E-value=0.00068 Score=77.11 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=28.5
Q ss_pred CccccCCcchHHhHHHHhcCC-----CCCcccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRH-----KYCPICDVLVYKT 43 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~s-----ksCPvCRk~IhkS 43 (937)
..+.|||-||-.||.+||..+ ..||.|+..|+..
T Consensus 200 ~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 200 VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 345699999999999999865 5799999988653
No 24
>KOG0823|consensus
Probab=96.23 E-value=0.002 Score=67.58 Aligned_cols=35 Identities=26% Similarity=0.599 Sum_probs=29.3
Q ss_pred ccCCccccCCcchHHhHHHHhcCC---CCCcccccccc
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLKRH---KYCPICDVLVY 41 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE~s---ksCPvCRk~Ih 41 (937)
|-..++-|||-||-.||.+|++.. +.||+|+-.+.
T Consensus 58 kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 58 KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 445678899999999999999863 67999998774
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.15 E-value=0.0026 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.9
Q ss_pred ccccCCcchHHhHHHHhcCCCCCcccc
Q psy8409 11 KLFFSFPVCKTCIVKYLKRHKYCPICD 37 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~sksCPvCR 37 (937)
...|+|.|...||.+++.....||+||
T Consensus 47 ~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 47 WGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp EETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 357999999999999999989999997
No 26
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=96.15 E-value=0.043 Score=51.99 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=66.3
Q ss_pred CCeeEEEEEccCCCCcccccccc-cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYG-RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWK 186 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~-KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWR 186 (937)
+.|.|.+|-.... +.+.+. ++|| ++..+||+++..+|+++|.|....-+=++|++.....+.||.++...+. .
T Consensus 23 ~~iPVIvE~~~~~----~~p~l~k~Kfl-Vp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~k-d 96 (112)
T cd01611 23 DRIPVIVERYPKS----DLPDLDKKKYL-VPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHK-D 96 (112)
T ss_pred CceEEEEEEcCCC----CcccccCceEE-ecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhC-C
Confidence 5788887764432 344454 5676 9999999999999999999998878999999976668888877655433 2
Q ss_pred CCCCeEEEEEeee
Q psy8409 187 KKTPMYLGYRILE 199 (937)
Q Consensus 187 RksPMvL~YRIke 199 (937)
.++-|.|.|....
T Consensus 97 ~DGfLyl~Ys~~~ 109 (112)
T cd01611 97 EDGFLYMTYSSEE 109 (112)
T ss_pred CCCEEEEEEeccc
Confidence 4899999997654
No 27
>KOG0802|consensus
Probab=96.14 E-value=0.0022 Score=72.84 Aligned_cols=35 Identities=17% Similarity=0.548 Sum_probs=31.5
Q ss_pred cccCCccccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 6 HKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 6 hkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
+.+.+.++|||-||.+|+.+|+++...||.||..+
T Consensus 306 ~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 306 NITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred ccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 34578899999999999999999999999999854
No 28
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=96.03 E-value=0.028 Score=51.04 Aligned_cols=72 Identities=13% Similarity=0.222 Sum_probs=58.2
Q ss_pred ccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecC-CCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 126 KAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLT-QNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 126 lk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~-ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
.+.+.++=..+++..||+.+.+||+++|++.....|=++|++..++ .+.+|-++...+ ..++-|.+.|...+
T Consensus 12 ~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~--~~dGfLyi~Ys~~~ 84 (87)
T cd01612 12 APILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF--GTNGELIVSYCKTV 84 (87)
T ss_pred CccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc--CCCCEEEEEEeCcc
Confidence 4567766666999999999999999999999877899999986444 678887765544 67899999997543
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.90 E-value=0.0037 Score=50.50 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=17.0
Q ss_pred CccccCCcchHHhHHHHhcCC----CCCc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRH----KYCP 34 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~s----ksCP 34 (937)
.++.|||+||+.||.+.+..+ ..||
T Consensus 15 ~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 15 MVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp EE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred EEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 458899999999999999843 3576
No 30
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=95.68 E-value=0.057 Score=52.33 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKK 187 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRR 187 (937)
|.|.|.+|-.... ...++||-+|..+||+.+...|+++|+|..+. +-++|+|..+....||-+| |..+=..
T Consensus 26 drIPVIvEk~~~s-------~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~l-Ye~~KDe 96 (121)
T PTZ00380 26 GHVAVVVEAAEKA-------GSKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGDI-ADACKRD 96 (121)
T ss_pred CccEEEEeecCCC-------CCceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHHH-HHHhcCC
Confidence 5688877754322 14668999999999999999999999999876 8899999777777787665 4433335
Q ss_pred CCCeEEEEEeee
Q psy8409 188 KTPMYLGYRILE 199 (937)
Q Consensus 188 ksPMvL~YRIke 199 (937)
++.|-+.|.-..
T Consensus 97 DGFLYi~Ys~e~ 108 (121)
T PTZ00380 97 DGFLYVSVRTEQ 108 (121)
T ss_pred CCeEEEEEcccc
Confidence 899999997554
No 31
>KOG0297|consensus
Probab=95.31 E-value=0.011 Score=65.43 Aligned_cols=57 Identities=19% Similarity=0.475 Sum_probs=44.6
Q ss_pred ccccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 3 TILHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 3 aLLhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
.+|+....+..|||.||+.||..++.....||.|+..++... .+-.++-++..+.++
T Consensus 29 ~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~---~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 29 SVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE---ELPVPRALRRELLKL 85 (391)
T ss_pred ccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhh---ccCchHHHHHHHHhc
Confidence 467777777899999999999999988788999998876553 233467777777654
No 32
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=95.29 E-value=0.18 Score=47.48 Aligned_cols=85 Identities=15% Similarity=0.284 Sum_probs=60.9
Q ss_pred CCeeEEEEEccCCCCccccccccc-ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYGR-RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWK 186 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~K-RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWR 186 (937)
+.|.|-+|-.... .++.+.+ +|| +|..+||+++...|+++|.|+...-+=++++|..+..+.||.++...++ .
T Consensus 15 ~~IPVIvEr~~~s----~lp~ldk~KfL-vp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~k-d 88 (104)
T PF02991_consen 15 DKIPVIVERYPKS----KLPDLDKKKFL-VPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYK-D 88 (104)
T ss_dssp TEEEEEEEE-TTS----SS---SSSEEE-EETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB--
T ss_pred CccEEEEEEccCC----ChhhcCccEEE-EcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhC-C
Confidence 4577777754432 2455654 566 8999999999999999999998878999999988888999888655433 3
Q ss_pred CCCCeEEEEEee
Q psy8409 187 KKTPMYLGYRIL 198 (937)
Q Consensus 187 RksPMvL~YRIk 198 (937)
.++.|-+.|.-.
T Consensus 89 eDGFLY~~Ys~e 100 (104)
T PF02991_consen 89 EDGFLYMTYSSE 100 (104)
T ss_dssp TTSSEEEEEESS
T ss_pred CCCeEEEEeccc
Confidence 689999999754
No 33
>KOG1813|consensus
Probab=94.24 E-value=0.022 Score=62.04 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=31.9
Q ss_pred cCCccccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 8 SGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 8 t~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
-..+..|+|+||..|-.+++..+..|.+|.+..|..
T Consensus 253 ~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 253 RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred cchhhcCCceeehhhhccccccCCcceecccccccc
Confidence 346789999999999999999999999999988753
No 34
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=93.85 E-value=0.2 Score=46.21 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=50.5
Q ss_pred ccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeec-CCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 126 KAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQL-TQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 126 lk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL-~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
.+.+.++-.++++.-|+.+|-+||+++|++.....|=++++.-.- ..|.++.++...|. .++.|++.|...+
T Consensus 12 aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~--~~~~Liv~Ys~t~ 84 (87)
T PF04110_consen 12 APILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG--TNGELIVSYSKTP 84 (87)
T ss_dssp ----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH---BTTBEEEEEESSS
T ss_pred CccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC--CCCEEEEEEeccc
Confidence 456888999999999999999999999999877789999987544 47889988877644 7789999998643
No 35
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=93.69 E-value=0.22 Score=41.13 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=46.0
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEE
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLG 194 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~ 194 (937)
-.|.+....||..||+.|+.+.+++. .++.++|+|..|.++.||.++ ......-+.|.
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~-~~~~L~~~G~~L~d~~tL~~~----~i~~~~~I~l~ 65 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPP-EQQRLIYNGKELDDDKTLSDY----GIKDGSTIHLV 65 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTG-GGEEEEETTEEESTTSBTGGG----TTSTTEEEEEE
T ss_pred EEEEECCCCCHHHhhhhccccccccc-ccceeeeeeecccCcCcHHHc----CCCCCCEEEEE
Confidence 45778889999999999999999886 578889999999999999553 34544544443
No 36
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=93.60 E-value=0.16 Score=40.44 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=40.7
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-++++...||..||..|+.+++++. .++-++|+|..|.++.||.++
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~~~~-~~~~L~~~g~~L~d~~tL~~~ 58 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTGIPV-EQQRLIYKGKVLEDDRTLADY 58 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCH-HHEEEEECCEECCCCCCHHHc
Confidence 44788899999999999999999975 468888999999999999653
No 37
>KOG1039|consensus
Probab=93.53 E-value=0.038 Score=61.01 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=28.1
Q ss_pred CccccCCcchHHhHHHHh--cC-----CCCCccccccccccCC
Q psy8409 10 PKLFFSFPVCKTCIVKYL--KR-----HKYCPICDVLVYKTKP 45 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyL--E~-----sksCPvCRk~IhkSrP 45 (937)
+...|-|+||..||.+|- .. .+.||.||.......|
T Consensus 183 ilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 183 ILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 445699999999999987 33 3689999998755544
No 38
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=93.17 E-value=0.034 Score=47.17 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=21.9
Q ss_pred cccccCCccccCCcchHHhHHHHhcC--CCCCcc
Q psy8409 4 ILHKSGPKLFFSFPVCKTCIVKYLKR--HKYCPI 35 (937)
Q Consensus 4 LLhkt~tTLECLHSFCKSCIvKyLE~--sksCPv 35 (937)
.|.+-.....|+|+|.|+.|..|+.. ...||+
T Consensus 20 ~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 20 PFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred hhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45555667789999999999999954 357998
No 39
>KOG1654|consensus
Probab=93.11 E-value=0.47 Score=46.09 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=65.0
Q ss_pred CCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKK 187 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRR 187 (937)
+.|.+.+|..+.. .+..++++=..+|+.+||+++-+.|++++.|..+.-+-++.+|..... -++|.-+|...-..
T Consensus 27 ~riPVIvEk~~~~----~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~t-s~~ms~~Ye~~kde 101 (116)
T KOG1654|consen 27 DRIPVIVEKAGKS----QLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPT-SATMSALYEEEKDE 101 (116)
T ss_pred CCCcEEEEecccc----cCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcc-hhhHHHHHHhhccc
Confidence 4577777854432 356777755668999999999999999999998888999998865555 66677777766667
Q ss_pred CCCeEEEEE
Q psy8409 188 KTPMYLGYR 196 (937)
Q Consensus 188 ksPMvL~YR 196 (937)
++.|-+.|.
T Consensus 102 DgFLYm~Ys 110 (116)
T KOG1654|consen 102 DGFLYMTYS 110 (116)
T ss_pred CcEEEEEec
Confidence 788888885
No 40
>KOG1002|consensus
Probab=92.76 E-value=0.045 Score=63.44 Aligned_cols=32 Identities=22% Similarity=0.635 Sum_probs=26.3
Q ss_pred CccccCCcchHHhHHHHhcC-----CCCCcccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKR-----HKYCPICDVLVY 41 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~-----sksCPvCRk~Ih 41 (937)
+...|-|.|||-||..|.+. +-.||+|.+.+.
T Consensus 550 i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 550 IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 45679999999999988874 257999998764
No 41
>KOG0824|consensus
Probab=92.49 E-value=0.077 Score=58.13 Aligned_cols=48 Identities=25% Similarity=0.542 Sum_probs=34.2
Q ss_pred CccccCCcchHHhHHHH-hcCCCCCccccccccccCCCCCCCCchhhHHHHHHhcCC
Q psy8409 10 PKLFFSFPVCKTCIVKY-LKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPG 65 (937)
Q Consensus 10 tTLECLHSFCKSCIvKy-LE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPg 65 (937)
+.+.|+|-||.-||... |.....|++||..|.. +|-...+|+ +.|.+.
T Consensus 21 v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids-----~i~~~psl~---~~LK~n 69 (324)
T KOG0824|consen 21 VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS-----TIDFEPSLK---YRLKPN 69 (324)
T ss_pred ccccccchhhhhhhcchhhcCCCCCceecCCCCc-----chhcchhhh---hhhcCC
Confidence 67899999999999975 5455679999998854 344444444 444444
No 42
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=91.97 E-value=0.32 Score=40.97 Aligned_cols=46 Identities=4% Similarity=0.192 Sum_probs=40.4
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
-.|.+....||..||+.|+.+.+++. .+..++|+|.+|.++.||.|
T Consensus 11 ~~~~v~~~~tV~~lK~~i~~~~gi~~-~~q~Li~~G~~L~d~~~l~~ 56 (70)
T cd01798 11 FPVEVDPDTDIKQLKEVVAKRQGVPP-DQLRVIFAGKELRNTTTIQE 56 (70)
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCH-HHeEEEECCeECCCCCcHHH
Confidence 44778889999999999999999975 46788899999999999965
No 43
>KOG4185|consensus
Probab=91.88 E-value=0.11 Score=54.05 Aligned_cols=54 Identities=19% Similarity=0.403 Sum_probs=37.3
Q ss_pred CCccccCCcchHHhHHHHhcCC-CCCcccccccc-ccCCCCCCCCchhhHHHHHHh
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVY-KTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~Ih-kSrPL~sLRpDrTLQdIVyKL 62 (937)
...+.|||+||..|+.+.+... ..||.||.... ......+++.|..|-.+++.+
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 3455599999999999998876 57999998731 222334456666666666544
No 44
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=91.70 E-value=0.11 Score=48.00 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.9
Q ss_pred ccCCcchHHhHHHHhcCC---CCCccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRH---KYCPICDVLV 40 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~s---ksCPvCRk~I 40 (937)
.|+|.|-..||.++++.. ..||+||+..
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 599999999999999863 6899999876
No 45
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=91.38 E-value=0.48 Score=40.06 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=40.0
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCC-CCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLS-NKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLp-se~EVEILCnGEpL~ddyTLMD 178 (937)
-.|.+....||..||+.|..+.+++ ...+.-|+|+|.+|.++.||.|
T Consensus 13 ~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~ 60 (77)
T cd01805 13 FPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60 (77)
T ss_pred EEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHH
Confidence 3578889999999999999999982 3456788899999999999965
No 46
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=91.04 E-value=0.67 Score=40.61 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=46.9
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEE
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYR 196 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YR 196 (937)
-.+.|+...||..||+.|+.+.+++.+ +.-+.+.|.+|.++.||.+. .-+...-+.|+|.
T Consensus 14 ~~~~v~~~~TV~~LK~~I~~~~~~~~~-~qrLi~~Gk~L~D~~tL~~y----gi~~~stv~l~~~ 73 (73)
T cd01791 14 VRVKCNPDDTIGDLKKLIAAQTGTRPE-KIVLKKWYTIFKDHISLGDY----EIHDGMNLELYYQ 73 (73)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCChH-HEEEEeCCcCCCCCCCHHHc----CCCCCCEEEEEeC
Confidence 345899999999999999999998864 44556789999999999652 2344567888873
No 47
>KOG0825|consensus
Probab=90.69 E-value=0.11 Score=62.50 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=28.4
Q ss_pred ccccCCcchHHhHHHHhcCCCCCccccccccccCCC
Q psy8409 11 KLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPL 46 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL 46 (937)
-+.|+|-||..||..|-.....||.||..+.+..++
T Consensus 141 ~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 141 EKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred ccccccccHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 356999999999988776678899999988665443
No 48
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=90.44 E-value=0.51 Score=40.27 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=39.6
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
-|.+....||..||+-|+.+.+++. .+..++|+|..|.++.||.+
T Consensus 14 ~l~v~~~~tV~~lK~~i~~~~gi~~-~~q~L~~~G~~L~d~~~L~~ 58 (74)
T cd01807 14 SLQVSEKESVSTLKKLVSEHLNVPE-EQQRLLFKGKALADDKRLSD 58 (74)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCH-HHeEEEECCEECCCCCCHHH
Confidence 3678899999999999999999985 46778899999999999965
No 49
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=89.74 E-value=0.64 Score=37.38 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=38.7
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
.++++..+||..||+.|..+++++.. ++-++|+|..|.++.+|.+
T Consensus 11 ~~~~~~~~ti~~lK~~i~~~~~~~~~-~~~l~~~g~~l~d~~~l~~ 55 (69)
T cd01769 11 ELEVSPDDTVAELKAKIAAKEGVPPE-QQRLIYAGKILKDDKTLSD 55 (69)
T ss_pred EEEECCCChHHHHHHHHHHHHCcChH-HEEEEECCcCCCCcCCHHH
Confidence 46788899999999999999998753 5777899999999999854
No 50
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.2 Score=56.42 Aligned_cols=36 Identities=28% Similarity=0.573 Sum_probs=32.4
Q ss_pred ccccCCccccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 5 LHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 5 Lhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
|.++..-+.|||-|=-+|+..|.|+...||.||..+
T Consensus 309 ~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 309 LDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred ccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 456778899999999999999999999999999864
No 51
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=88.42 E-value=0.92 Score=37.83 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=45.2
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-+.+....||..||+.|..+.+++. .+..++|+|..|.++.||.++ .=....-+.|..|.
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~g~~~-~~q~L~~~g~~L~d~~~L~~~----~i~~~~~i~l~~~~ 73 (76)
T cd01803 14 TLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 73 (76)
T ss_pred EEEECCcCcHHHHHHHHHHHhCCCH-HHeEEEECCEECCCCCcHHHc----CCCCCCEEEEEEEc
Confidence 3788889999999999999999975 456777999999999998552 12233445555543
No 52
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=88.27 E-value=0.92 Score=39.24 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=39.5
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
..|.+....||..||..|+.+.+++.. +..++|+|++|.++.||.+
T Consensus 11 ~~l~v~~~~TV~~lK~~I~~~~gi~~~-~q~Li~~G~~L~D~~~l~~ 56 (70)
T cd01794 11 VKLSVSSKDTVGQLKKQLQAAEGVDPC-CQRWFFSGKLLTDKTRLQE 56 (70)
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHH-HeEEEECCeECCCCCCHHH
Confidence 457788899999999999999999864 4567789999999999965
No 53
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=88.21 E-value=0.7 Score=56.10 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHcCCC----CCceEEEEECCeecCCCCchhhHHhhhccC---CCCCeEEEEEeeec
Q psy8409 140 APVSILHKFLKNKFNLS----NKHCVELVCNNEQLTQNISVMDVAYIYQWK---KKTPMYLGYRILET 200 (937)
Q Consensus 140 ATVsHLKKFLAkKLdLp----se~EVEILCnGEpL~ddyTLMDfAyIYrWR---RksPMvL~YRIke~ 200 (937)
=.++++|.+|+.-+++. +.+-+|++++|.++.-++.+.| +|..-|+ ...||++.||+..-
T Consensus 15 PlmrdvknkIc~d~~m~~lleDd~gmELlV~~~IisldL~v~~-Vy~~vW~~~~~~~pM~v~YR~~Gl 81 (802)
T PF13764_consen 15 PLMRDVKNKICRDLEMIALLEDDNGMELLVNNKIISLDLPVRD-VYEKVWKPNNQNPPMRVVYRMRGL 81 (802)
T ss_pred chHHHHHHHHhhhcccchhccCCcccceeecCeeecCCCcHHH-HHHHHhcccCCCCCeEEEEeecCC
Confidence 36899999999999874 4667999999999999999977 5888998 45799999999874
No 54
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=87.88 E-value=1.1 Score=37.00 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=39.0
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
-+++....||..||+-|..+.+++. .+..++|+|..|.++.||.+
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~g~~L~d~~~L~~ 58 (72)
T cd01809 14 TFTVEEEITVLDLKEKIAEEVGIPV-EQQRLIYSGRVLKDDETLSE 58 (72)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCH-HHeEEEECCEECCCcCcHHH
Confidence 4788889999999999999999975 35677889999999999965
No 55
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=87.67 E-value=0.99 Score=38.73 Aligned_cols=45 Identities=11% Similarity=0.133 Sum_probs=37.6
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCC-Cchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQN-ISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~dd-yTLMD 178 (937)
-|.++..+||..||.+|..+.+++. .+..++|+|.+|.++ .+|.+
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~gip~-~~q~Li~~Gk~L~D~~~~L~~ 58 (71)
T cd01796 13 SLDVDPDLELENFKALCEAESGIPA-SQQQLIYNGRELVDNKRLLAL 58 (71)
T ss_pred EEEECCcCCHHHHHHHHHHHhCCCH-HHeEEEECCeEccCCcccHHH
Confidence 3778889999999999999999986 456778999999887 57754
No 56
>KOG4628|consensus
Probab=87.63 E-value=0.26 Score=54.87 Aligned_cols=33 Identities=24% Similarity=0.532 Sum_probs=28.2
Q ss_pred ccccCCcchHHhHHHHhcCC-CCCcccccccccc
Q psy8409 11 KLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKT 43 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkS 43 (937)
+|.|.|.|=..||-.|+... ..||+|++.+...
T Consensus 247 iLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 247 ILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred EecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 48999999999999999887 4599999877543
No 57
>KOG4739|consensus
Probab=86.93 E-value=0.34 Score=51.46 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=35.4
Q ss_pred CCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhcCCc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGL 66 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL 66 (937)
+=++-|+|-||-.|.-....+ .||.|++.+. -++.|..|-.-|..+|-.+
T Consensus 18 f~LTaC~HvfC~~C~k~~~~~--~C~lCkk~ir------~i~l~~slp~~ik~~F~d~ 67 (233)
T KOG4739|consen 18 FFLTACRHVFCEPCLKASSPD--VCPLCKKSIR------IIQLNRSLPTDIKSYFADP 67 (233)
T ss_pred eeeeechhhhhhhhcccCCcc--ccccccceee------eeecccccchhHHHHccCc
Confidence 446789999999998765433 8999998863 2455666666666665444
No 58
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=86.78 E-value=1.3 Score=37.89 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=46.5
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
.-|.+....||..||..|..+.+++. .+..++|+|.+|.++.||.++ .-+...-+.|.-|+
T Consensus 11 ~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~Li~~Gk~L~D~~tL~~~----~i~~~~tl~l~~~l 71 (74)
T cd01793 11 HTLEVTGQETVSDIKAHVAGLEGIDV-EDQVLLLAGVPLEDDATLGQC----GVEELCTLEVAGRL 71 (74)
T ss_pred EEEEECCcCcHHHHHHHHHhhhCCCH-HHEEEEECCeECCCCCCHHHc----CCCCCCEEEEEEec
Confidence 45788889999999999999999876 456788999999999999652 23334455555443
No 59
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=86.56 E-value=1.5 Score=36.59 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=38.4
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
+++....||..||..|..+.+++.. +.-++++|..|.++.||.+
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~g~~~~-~qrL~~~g~~L~d~~tl~~ 58 (76)
T cd01806 15 IDIEPTDKVERIKERVEEKEGIPPQ-QQRLIYSGKQMNDDKTAAD 58 (76)
T ss_pred EEECCCCCHHHHHHHHhHhhCCChh-hEEEEECCeEccCCCCHHH
Confidence 6888999999999999999999864 4566689999999999965
No 60
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=86.30 E-value=1.7 Score=36.37 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=42.9
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-.+++....+|.-|...++.+.+++...++.++++|+.|.++.|+.++
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 4677888999999999999999999987899999999999999999664
No 61
>KOG1001|consensus
Probab=85.92 E-value=0.27 Score=58.38 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=32.4
Q ss_pred cccCCccccCCcchHHhHHHHhcCC--CCCccccccccccC
Q psy8409 6 HKSGPKLFFSFPVCKTCIVKYLKRH--KYCPICDVLVYKTK 44 (937)
Q Consensus 6 hkt~tTLECLHSFCKSCIvKyLE~s--ksCPvCRk~IhkSr 44 (937)
.....+..|+|-||++|+...++.. ..||.|+..+....
T Consensus 463 ~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 463 LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 4556778999999999999999874 46999999887653
No 62
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=85.62 E-value=1.7 Score=37.27 Aligned_cols=60 Identities=10% Similarity=0.214 Sum_probs=45.9
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-|.+....||..||+.|..+.+++.. +..++|+|..|.++.||.+ |.-....-+.|.-|.
T Consensus 12 ~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~~G~~L~D~~tL~~----~~i~~~~tl~l~~~l 71 (74)
T cd01810 12 IYEVQLTQTVATLKQQVSQRERVQAD-QFWLSFEGRPMEDEHPLGE----YGLKPGCTVFMNLRL 71 (74)
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHH-HeEEEECCEECCCCCCHHH----cCCCCCCEEEEEEEc
Confidence 36777889999999999999999764 4577899999999999965 223444566666554
No 63
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=84.85 E-value=1.9 Score=36.56 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=38.9
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
-|.+....||..||+-|+.+.+++. .+..+.|+|..|.++.||.|
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~-~~~~Li~~Gk~L~d~~tL~~ 57 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQ-EQLVLIFAGKILKDTDTLTQ 57 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCH-HHEEEEECCeEcCCCCcHHH
Confidence 3777788999999999999999764 56778899999999999966
No 64
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=84.62 E-value=1.6 Score=36.23 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=38.0
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
++++...||..||..|..+.+++.. +..++|+|..|.++.+|.+
T Consensus 14 i~v~~~~tv~~lK~~i~~~~gi~~~-~q~L~~~g~~l~d~~~L~~ 57 (71)
T cd01812 14 LSISSQATFGDLKKMLAPVTGVEPR-DQKLIFKGKERDDAETLDM 57 (71)
T ss_pred EEECCCCcHHHHHHHHHHhhCCChH-HeEEeeCCcccCccCcHHH
Confidence 7788999999999999999999864 4667788999999999855
No 65
>PTZ00044 ubiquitin; Provisional
Probab=84.62 E-value=1.8 Score=36.59 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=39.0
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
.-|++....||..||..|..+.+++. .+..++|+|..|.++.||.+
T Consensus 13 ~~l~v~~~~tv~~lK~~i~~~~gi~~-~~q~L~~~g~~L~d~~~l~~ 58 (76)
T PTZ00044 13 QSFNFEPDNTVQQVKMALQEKEGIDV-KQIRLIYSGKQMSDDLKLSD 58 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCH-HHeEEEECCEEccCCCcHHH
Confidence 34688899999999999999999986 45666699999999999854
No 66
>KOG3800|consensus
Probab=83.57 E-value=0.89 Score=49.90 Aligned_cols=31 Identities=23% Similarity=0.598 Sum_probs=27.4
Q ss_pred ccCCcchHHhHHHHhcCC-CCCcccccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRH-KYCPICDVLVYKT 43 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkS 43 (937)
+|+|+-|.+|..+-+..+ ..||.|.+.+.+.
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 999999999999999876 6799999887554
No 67
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=82.83 E-value=1.7 Score=39.37 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=36.2
Q ss_pred cCCccHHHHHHHHHHHcC--CCCCceEEEEECCeecCCCCchhh
Q psy8409 137 KASAPVSILHKFLKNKFN--LSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 137 SArATVsHLKKFLAkKLd--Lpse~EVEILCnGEpL~ddyTLMD 178 (937)
|+..||..||.-|..+++ +....+..+.|.|..|.++.||.+
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~d 61 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDF 61 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHH
Confidence 468999999999999974 655567888899999999999966
No 68
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=82.76 E-value=2.1 Score=37.48 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=44.2
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEE
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYR 196 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YR 196 (937)
.-|.++..+||.+||+-|+.+.+++. .+.-+.+.|.+|.++ ||.+. .-+...-+.|.-.
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~~~~~-~~qrL~~~Gk~L~d~-~L~~~----gi~~~~~i~l~~~ 72 (78)
T cd01804 14 FDLSVPPDETVEGLKKRISQRLKVPK-ERLALLHRETRLSSG-KLQDL----GLGDGSKLTLVPT 72 (78)
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCCh-HHEEEEECCcCCCCC-cHHHc----CCCCCCEEEEEee
Confidence 45888889999999999999999875 466788999999998 88552 2333444555433
No 69
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=82.31 E-value=2.5 Score=39.33 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
..|.+....||..||..|..+.+++. .+..++|+|..|.++.||.+
T Consensus 40 ~~leV~~~~TV~~lK~kI~~~~gip~-~~QrLi~~Gk~L~D~~tL~d 85 (103)
T cd01802 40 FELRVSPFETVISVKAKIQRLEGIPV-AQQHLIWNNMELEDEYCLND 85 (103)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCh-HHEEEEECCEECCCCCcHHH
Confidence 45788899999999999999999875 45778899999999999955
No 70
>KOG0827|consensus
Probab=81.79 E-value=0.72 Score=52.43 Aligned_cols=38 Identities=24% Similarity=0.594 Sum_probs=31.1
Q ss_pred cccCCccccCCcchHHhHHHHhcCC---CCCcccccccccc
Q psy8409 6 HKSGPKLFFSFPVCKTCIVKYLKRH---KYCPICDVLVYKT 43 (937)
Q Consensus 6 hkt~tTLECLHSFCKSCIvKyLE~s---ksCPvCRk~IhkS 43 (937)
|+-.++-.|||.|=--|+..||+.. +.||.|+..+...
T Consensus 18 ~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 18 HELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred cccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 4556666799999999999999974 5799999877554
No 71
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=78.53 E-value=1 Score=39.01 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=27.3
Q ss_pred cccCCccccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 6 HKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 6 hkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
....+++.|+|-.|+.|-- +++-+.||.|.+.+...
T Consensus 17 ~~~~~~~pCgH~I~~~~f~--~~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 17 GTKGTVLPCGHLICDNCFP--GERYNGCPFCGTPFEFD 52 (55)
T ss_pred ccccccccccceeeccccC--hhhccCCCCCCCcccCC
Confidence 3567899999999999843 22346799999988544
No 72
>KOG1785|consensus
Probab=77.48 E-value=1.4 Score=50.43 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=29.6
Q ss_pred cCCccccCCcchHHhHHHHhcC--CCCCccccccccccC
Q psy8409 8 SGPKLFFSFPVCKTCIVKYLKR--HKYCPICDVLVYKTK 44 (937)
Q Consensus 8 t~tTLECLHSFCKSCIvKyLE~--sksCPvCRk~IhkSr 44 (937)
--.+-.|||-.|-+|+..|-+. +..||.||-.|..+.
T Consensus 381 dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 381 DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred CcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 3456689999999999987654 478999999986654
No 73
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=77.19 E-value=4.3 Score=36.89 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=43.2
Q ss_pred EEecCCccHHHHHHHHHHHcC-CCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEE
Q psy8409 134 LRCKASAPVSILHKFLKNKFN-LSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGY 195 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLd-Lpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~Y 195 (937)
+-|....||..||..|+..++ .+...+.-+.|.|.+|.++.||.++..- -....-|+|-|
T Consensus 18 ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~--~~~~~tiHLV~ 78 (79)
T cd01790 18 VSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRK--QDEYHMVHLVC 78 (79)
T ss_pred EecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhc--ccCCceEEEEe
Confidence 445678899999999999884 4444566788899999999999876321 12234566654
No 74
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=75.47 E-value=7.2 Score=28.09 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=36.6
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCch
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISV 176 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTL 176 (937)
..-+++....||..|+++|..+++++ ..++.|+++|..+.+...+
T Consensus 9 ~~~~~~~~~~tv~~l~~~i~~~~~~~-~~~~~l~~~~~~~~~~~~~ 53 (69)
T cd00196 9 TVELLVPSGTTVADLKEKLAKKLGLP-PEQQRLLVNGKILPDSLTL 53 (69)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHCcC-hHHeEEEECCeECCCCCcH
Confidence 34566778999999999999999954 4578889999888877765
No 75
>KOG1493|consensus
Probab=75.43 E-value=1.1 Score=41.47 Aligned_cols=28 Identities=25% Similarity=0.634 Sum_probs=24.2
Q ss_pred ccCCcchHHhHHHHhcCC---CCCccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRH---KYCPICDVLV 40 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~s---ksCPvCRk~I 40 (937)
-|+|.|=.-||++++... ..||+||+..
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 499999999999999863 5799999865
No 76
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=75.40 E-value=4.3 Score=35.42 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=37.0
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEE--EECCeecCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVEL--VCNNEQLTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEI--LCnGEpL~ddyTLMD 178 (937)
.+.+....||..||+-|+.+.+++. .+.-+ .++|.+|.++.||.|
T Consensus 16 ~~~v~~~~TV~~lK~~I~~~~~i~~-~~qrL~~~~~G~~L~D~~tL~~ 62 (80)
T cd01792 16 LVSLRDSMTVSELKQQIAQKIGVPA-FQQRLAHLDSREVLQDGVPLVS 62 (80)
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCH-HHEEEEeccCCCCCCCCCCHHH
Confidence 3567788999999999999999875 34455 678999999999965
No 77
>PF04641 Rtf2: Rtf2 RING-finger
Probab=74.85 E-value=2.4 Score=44.69 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=27.0
Q ss_pred CccccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
.+..|||-||..||...- ....||+|...+...
T Consensus 131 ~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 131 YLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred EEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 456899999999999883 356799999998654
No 78
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=73.61 E-value=17 Score=32.53 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=44.0
Q ss_pred cccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 129 YGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 129 L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
...-++++....|+..|+..++.+.+++. .++-++++|+.|.++.|+.++
T Consensus 21 g~~~~~~v~~~~~l~~l~~~y~~~~gi~~-~~~rf~f~G~~L~~~~T~~~l 70 (87)
T cd01763 21 GNEVFFKIKRSTPLKKLMEAYCQRQGLSM-NSVRFLFDGQRIRDNQTPDDL 70 (87)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHhCCCc-cceEEEECCeECCCCCCHHHc
Confidence 34478899999999999999999999985 589999999999999999653
No 79
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=73.34 E-value=5.7 Score=35.12 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=36.8
Q ss_pred ecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 136 CKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 136 CSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
.....||..||..|..+.+++. .+..++|+|..|.++.||.+
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~-~~QrLi~~Gk~L~D~~tL~~ 60 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEP-ECQRLFYRGKQMEDGHTLFD 60 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCH-HHeEEEeCCEECCCCCCHHH
Confidence 5668999999999999999886 45688899999999999955
No 80
>KOG3439|consensus
Probab=72.98 E-value=29 Score=34.25 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=58.0
Q ss_pred cccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecC-CCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 125 NKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLT-QNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 125 nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~-ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
+.+.|.++-..+...-|+.-+..||++.|+|.-.+++-++++.-.-+ ++.+..++... +.-++-|+|+|.+..
T Consensus 40 ~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~c--f~~d~~Lvl~Yc~s~ 113 (116)
T KOG3439|consen 40 DAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYEC--FGTDGKLVLNYCISV 113 (116)
T ss_pred CCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHh--cCCCCEEEEEEeeec
Confidence 35678889999999999999999999999999888899999875333 66666554333 345789999998754
No 81
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=72.29 E-value=7.2 Score=37.21 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=37.7
Q ss_pred ceEEecCCccHHHHHHHHHHHc--CCC----CCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKF--NLS----NKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKL--dLp----se~EVEILCnGEpL~ddyTLMDf 179 (937)
.=++++...||..||.+|.... +.+ ...+|-++|.|.+|.+.-||.+.
T Consensus 16 ~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~ 69 (111)
T PF13881_consen 16 GPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDC 69 (111)
T ss_dssp EEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGG
T ss_pred cccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHh
Confidence 4466888999999999999866 222 35589999999999999999774
No 82
>KOG0308|consensus
Probab=71.74 E-value=2.2 Score=51.07 Aligned_cols=40 Identities=25% Similarity=0.518 Sum_probs=35.9
Q ss_pred eEEEEEC--------C------eecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 160 CVELVCN--------N------EQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 160 EVEILCn--------G------EpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
.||++|+ | ++|.++++|.- +..+.||..+-|+|+||+...
T Consensus 668 ~iellcn~~~f~~~~D~~~~~fqVldPdM~L~T-Vr~~iWKs~gDlvl~Yr~k~~ 721 (735)
T KOG0308|consen 668 KIELLCNKALFRDPTDLPRISFQVLDPDMDLRT-VRHLIWKSSGDLVLHYRVKVH 721 (735)
T ss_pred hhHHHhccccccCcCCccccceEEeCCCCcHHH-hhhheecCCCcEEEEEeeecc
Confidence 5789999 8 99999999955 678999999999999999886
No 83
>KOG1814|consensus
Probab=71.54 E-value=1.8 Score=49.60 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=31.3
Q ss_pred CCccccCCcchHHhHHHHhcCC--------CCCccccccccccCCCCCCCCchhhHHHHH
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH--------KYCPICDVLVYKTKPLQSIRPDTRLQNVVY 60 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s--------ksCPvCRk~IhkSrPL~sLRpDrTLQdIVy 60 (937)
|..++|+|-|||+|+..|++.. -.||.|+=. +..+--.|+++|.
T Consensus 200 ~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~--------~~a~~g~vKelvg 251 (445)
T KOG1814|consen 200 FKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG--------SVAPPGQVKELVG 251 (445)
T ss_pred eeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc--------ccCCchHHHHHHH
Confidence 5678999999999999999731 369977632 2233337777773
No 84
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=68.90 E-value=10 Score=32.77 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=43.7
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEee
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRIL 198 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIk 198 (937)
|.+....||..||.-|..+.+++.. +..++++|..|.++.||.++ . =.....++|.-+..
T Consensus 12 l~v~~~~TV~~lK~~i~~~~gip~~-~q~L~~~G~~L~d~~tL~~~-~---i~~g~~l~v~~~~~ 71 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEETGMPAG-KQKLQYEGIFIKDSNSLAYY-N---LANGTIIHLQLKER 71 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHH-HEEEEECCEEcCCCCcHHHc-C---CCCCCEEEEEEecC
Confidence 5566788999999999999999864 45677889999999999542 1 22334555555443
No 85
>KOG2932|consensus
Probab=68.57 E-value=2.2 Score=47.72 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=23.2
Q ss_pred CccccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
-++.|-|-||-.|-..+ ..+.||.|.-.+
T Consensus 105 RmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARSD--SDKICPLCDDRV 133 (389)
T ss_pred cccccchhhhhhhhhcC--ccccCcCcccHH
Confidence 36789999999998743 367899999655
No 86
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=65.50 E-value=10 Score=33.28 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=38.2
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEE--ECCeecCCCCchhhH
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELV--CNNEQLTQNISVMDV 179 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEIL--CnGEpL~ddyTLMDf 179 (937)
+.+....||..||.-|..+.+++.+.|=-|+ +.|.+|.++.+|.++
T Consensus 14 v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~ 61 (74)
T cd01813 14 VTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL 61 (74)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence 8888999999999999999999875444443 378899999999664
No 87
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=64.33 E-value=14 Score=34.63 Aligned_cols=46 Identities=9% Similarity=0.252 Sum_probs=38.6
Q ss_pred cCCccHHHHHHHHHHHc-CCCCCceEEEEECCeecCCCCchhhHHhh
Q psy8409 137 KASAPVSILHKFLKNKF-NLSNKHCVELVCNNEQLTQNISVMDVAYI 182 (937)
Q Consensus 137 SArATVsHLKKFLAkKL-dLpse~EVEILCnGEpL~ddyTLMDfAyI 182 (937)
+..+||.+||+.|+.++ .-.....+-++|+|..|.++..|...+..
T Consensus 21 ~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~ 67 (97)
T PF10302_consen 21 PNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKL 67 (97)
T ss_pred CCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhcc
Confidence 36899999999999999 45567789999999999999988654443
No 88
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=63.10 E-value=5.2 Score=37.50 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=26.7
Q ss_pred ccCCcchHHhHHHHhcCCCCCccccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
-|-|.|=--||.+++.....||+|++...-
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 489999999999999998899999987643
No 89
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=61.81 E-value=6 Score=33.56 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=16.9
Q ss_pred cccCCcchHHhHHHHhcC-CCCCcccccc
Q psy8409 12 LFFSFPVCKTCIVKYLKR-HKYCPICDVL 39 (937)
Q Consensus 12 LECLHSFCKSCIvKyLE~-sksCPvCRk~ 39 (937)
=+|++..|+.|-.+-.+. +..||-||+.
T Consensus 18 C~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 18 CECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp STTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 379999999999998874 6889999974
No 90
>PHA03096 p28-like protein; Provisional
Probab=61.55 E-value=4.4 Score=44.15 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=21.6
Q ss_pred CCccccCCcchHHhHHHHhcCC---CCCccccc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH---KYCPICDV 38 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s---ksCPvCRk 38 (937)
.+..+|-|.||..||..|-... ..||.|++
T Consensus 199 gil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 199 GILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred cccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 3455899999999999876542 44666664
No 91
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.36 E-value=14 Score=41.77 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=38.7
Q ss_pred ceEEecCCccHHHHHHHHHHHcC---CCCCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFN---LSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLd---Lpse~EVEILCnGEpL~ddyTLMD 178 (937)
--|.+....||..||+.|..+.+ ++. .+.-|+|+|.+|.++.||.+
T Consensus 13 ~~IeV~~~~TV~dLK~kI~~~~g~~~ip~-~~QkLIy~GkiL~Dd~tL~d 61 (378)
T TIGR00601 13 FKIDMEPDETVKELKEKIEAEQGKDAYPV-AQQKLIYSGKILSDDKTVRE 61 (378)
T ss_pred EEEEeCCcChHHHHHHHHHHhhCCCCCCh-hHeEEEECCEECCCCCcHHH
Confidence 34678889999999999999987 553 46778899999999999965
No 92
>KOG3039|consensus
Probab=59.16 E-value=6.3 Score=43.13 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=28.3
Q ss_pred ccccCCcchHHhHHHHhcCCCCCccccccccc
Q psy8409 11 KLFFSFPVCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
...|||-||+.|..+.......||+|+..+..
T Consensus 240 Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 240 LRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred eccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 35799999999999999999999999988743
No 93
>KOG4172|consensus
Probab=58.82 E-value=5 Score=35.50 Aligned_cols=29 Identities=28% Similarity=0.660 Sum_probs=24.3
Q ss_pred cccCC-cchHHhHHHHhcC-CCCCccccccc
Q psy8409 12 LFFSF-PVCKTCIVKYLKR-HKYCPICDVLV 40 (937)
Q Consensus 12 LECLH-SFCKSCIvKyLE~-sksCPvCRk~I 40 (937)
-.||| -.|..|-.+.|.. ...||.||..+
T Consensus 23 YtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 23 YTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred HHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 35999 5699999999985 47899999876
No 94
>KOG4692|consensus
Probab=57.45 E-value=5.7 Score=45.23 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=27.6
Q ss_pred CccccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
....|+|.-|+.||.+|+-.++.|=-|+..+
T Consensus 436 vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv 466 (489)
T KOG4692|consen 436 VFAPCSHRSCYGCITQHLMNCKRCFFCKTTV 466 (489)
T ss_pred hccCCCCchHHHHHHHHHhcCCeeeEeccee
Confidence 3468999999999999999999999999765
No 95
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=56.61 E-value=23 Score=34.74 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=37.0
Q ss_pred EEecCCccHHHHHHHHHHHcC-----CC-CCceEEEEECCeecCCCCchhhH
Q psy8409 134 LRCKASAPVSILHKFLKNKFN-----LS-NKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLd-----Lp-se~EVEILCnGEpL~ddyTLMDf 179 (937)
.+++...||..||.-|...-. ++ ...++-++|.|.+|.++.||.+.
T Consensus 20 ~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~ 71 (113)
T cd01814 20 KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGEC 71 (113)
T ss_pred cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHh
Confidence 356789999999999996553 22 34578899999999999999764
No 96
>KOG0298|consensus
Probab=56.46 E-value=4 Score=52.01 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=34.0
Q ss_pred cccccccCCccccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 2 TTILHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 2 ~aLLhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
+.+||+-.-+..|||.||..|+..+++....||.|....
T Consensus 1160 ~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1160 LDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred HHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 457887778889999999999999999999999999544
No 97
>KOG0804|consensus
Probab=50.24 E-value=7.2 Score=45.37 Aligned_cols=28 Identities=18% Similarity=0.635 Sum_probs=23.2
Q ss_pred ccccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 11 KLFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
++-|-|+|=-+|+.+||. ..||+||-..
T Consensus 194 t~~c~Hsfh~~cl~~w~~--~scpvcR~~q 221 (493)
T KOG0804|consen 194 TILCNHSFHCSCLMKWWD--SSCPVCRYCQ 221 (493)
T ss_pred eeecccccchHHHhhccc--CcChhhhhhc
Confidence 567999998899999985 4699999543
No 98
>KOG1645|consensus
Probab=50.07 E-value=6.9 Score=45.10 Aligned_cols=44 Identities=30% Similarity=0.505 Sum_probs=33.1
Q ss_pred CCccccCCcchHHhHHHHhcCC--CCCccccccccccCCCCCCCCchhhH
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH--KYCPICDVLVYKTKPLQSIRPDTRLQ 56 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s--ksCPvCRk~IhkSrPL~sLRpDrTLQ 56 (937)
+.++.|||-|=..||.+|+-.. ..||.|.-.-+++ .|++-..++
T Consensus 22 ~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr----~i~~e~alR 67 (463)
T KOG1645|consen 22 IVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR----QIRPEYALR 67 (463)
T ss_pred EeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH----HHHHHHHHH
Confidence 4578899999999999999642 5799999877665 455544444
No 99
>KOG2930|consensus
Probab=49.32 E-value=9.7 Score=37.16 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=25.3
Q ss_pred ccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
.|-|.|=--||.+++.....||.|.+.-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 5999999999999999999999998753
No 100
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=47.79 E-value=25 Score=34.81 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=49.0
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhh-cc--CCCCCeEEEEEe
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIY-QW--KKKTPMYLGYRI 197 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIY-rW--RRksPMvL~YRI 197 (937)
.-|+.|....||..|||-|..-++.+.++|--+ -.+++|.+.-||.|.-.-. .- ...+.+-|.||-
T Consensus 13 TiF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 13 TIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred EEEeecCCcccHHHHHHHHHHHhcCChhHheee-cCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 368999999999999999999999987766544 5678999999997632210 11 223567777774
No 101
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=46.76 E-value=70 Score=28.38 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=40.9
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecC-CCCchhhHHhhhccCCCCCeEEEE
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLT-QNISVMDVAYIYQWKKKTPMYLGY 195 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~-ddyTLMDfAyIYrWRRksPMvL~Y 195 (937)
.-|.+....||..||.-|..+.+++...+ .+ +.|..|. ++.||.++ .-+.++-|.+.|
T Consensus 15 ~~l~v~~~~TV~~lK~kI~~~~gip~~~Q-rL-~~G~~L~dD~~tL~~y----gi~~~g~~~~l~ 73 (75)
T cd01799 15 IWLTVRPDMTVAQLKDKVFLDYGFPPAVQ-RW-VIGQRLARDQETLYSH----GIRTNGDSAFLY 73 (75)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHE-EE-EcCCeeCCCcCCHHHc----CCCCCCCEEEEE
Confidence 44788889999999999999999986544 44 7776674 66898542 223344555554
No 102
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=46.44 E-value=1.6e+02 Score=25.33 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=47.4
Q ss_pred ccceEEecCCccHHHHHHHHHHHcCC-CCCceEEE--EE--CC--eecCCCCchhhHHhhhccCCCC-CeEEEEEeee
Q psy8409 130 GRRYLRCKASAPVSILHKFLKNKFNL-SNKHCVEL--VC--NN--EQLTQNISVMDVAYIYQWKKKT-PMYLGYRILE 199 (937)
Q Consensus 130 ~KRYLRCSArATVsHLKKFLAkKLdL-pse~EVEI--LC--nG--EpL~ddyTLMDfAyIYrWRRks-PMvL~YRIke 199 (937)
..+-|+++..+|+..|-+-++.|+++ .+..+..+ +. +| ..|.++--..++. ..|.+.. -.+|.+|..+
T Consensus 17 ~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~--~~~~~~~~~~~f~lr~~~ 92 (93)
T PF00788_consen 17 TYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQ--LQWPKDSQNSRFVLRRKE 92 (93)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHH--HTTSSGTTTEEEEEEECC
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHH--HhCccccCceEEEEEEcC
Confidence 57899999999999999999999999 33334444 22 22 4776555554543 4698764 6777766543
No 103
>KOG1812|consensus
Probab=46.40 E-value=9 Score=43.06 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCccccCCcchHHhHHHHhcC
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKR 29 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~ 29 (937)
+.+..|+|.||+.|..+|++.
T Consensus 163 f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 163 FSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred HHHhcccchhhhHHhHHHhhh
Confidence 346789999999999999984
No 104
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=46.35 E-value=10 Score=32.72 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=22.7
Q ss_pred ccccC-CcchHHhHHHHhcCCCCCcccccccc
Q psy8409 11 KLFFS-FPVCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 11 TLECL-HSFCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
.+.|. |-.|..|+..-+..+..||.|...+.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 44564 77899999999999999999998874
No 105
>KOG4362|consensus
Probab=45.80 E-value=9.5 Score=46.19 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=31.1
Q ss_pred ccccCCccccCCcchHHhHHHHhcCC---CCCcccccccccc
Q psy8409 5 LHKSGPKLFFSFPVCKTCIVKYLKRH---KYCPICDVLVYKT 43 (937)
Q Consensus 5 Lhkt~tTLECLHSFCKSCIvKyLE~s---ksCPvCRk~IhkS 43 (937)
+.+..+.+.|.|-||+.|+...|+.. ..||+|+..+.+.
T Consensus 30 ~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 30 HVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred EeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 34555789999999999999988763 5799999877543
No 106
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=44.74 E-value=40 Score=32.97 Aligned_cols=76 Identities=9% Similarity=0.004 Sum_probs=49.2
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecC-CCCchhhHHhhhccCCCCCeEEEEEeeecccccccchHH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLT-QNISVMDVAYIYQWKKKTPMYLGYRILETKIKRISETEE 210 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~-ddyTLMDfAyIYrWRRksPMvL~YRIke~sikpip~~e~ 210 (937)
+-|-|++..||..||..|+++|+++.+.|=-++. |+.|. +.-||.+ |.-..++-+.|. +.+....++-+++-
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-G~~L~DDsrTLss----yGv~sgSvl~Ll--ideP~~d~~~~~~~ 89 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-GKILSDDCATLGT----LGVIPESVILLK--ADEPIADYAAMDDV 89 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccceeeec-CceeccCCccHHh----cCCCCCCEEEEE--ecCCcccHHHHHHH
Confidence 4566899999999999999999999876644444 66555 6677744 333344444444 33444445555555
Q ss_pred hhhh
Q psy8409 211 AENS 214 (937)
Q Consensus 211 aE~~ 214 (937)
+++|
T Consensus 90 ~~~~ 93 (107)
T cd01795 90 MQVC 93 (107)
T ss_pred HHhc
Confidence 5555
No 107
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=43.32 E-value=9.8 Score=41.63 Aligned_cols=32 Identities=22% Similarity=0.550 Sum_probs=27.5
Q ss_pred cccCCcchHHhHHHHhcCC-CCCc--ccccccccc
Q psy8409 12 LFFSFPVCKTCIVKYLKRH-KYCP--ICDVLVYKT 43 (937)
Q Consensus 12 LECLHSFCKSCIvKyLE~s-ksCP--vCRk~IhkS 43 (937)
-+|.|..|-||..|-|..+ ..|| -|++-+.+-
T Consensus 32 PECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 32 PECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 4799999999999999886 6899 999877543
No 108
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=43.31 E-value=99 Score=26.31 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=44.9
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEE--C--C--eecCCCCchhhHHhhhccCCCCCeEEEEEee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVC--N--N--EQLTQNISVMDVAYIYQWKKKTPMYLGYRIL 198 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILC--n--G--EpL~ddyTLMDfAyIYrWRRksPMvL~YRIk 198 (937)
.=+.+...+|+..|=..|+.+|+|.+....-+.+ . | .-|..+-+|.+.+ .+...++.|++|++
T Consensus 9 ~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~----~~~~~~~~l~frvk 77 (80)
T PF09379_consen 9 KTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQL----KKNNPPFTLYFRVK 77 (80)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGST----BTSSSSEEEEEEES
T ss_pred EEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHc----CCCCCCEEEEEEEE
Confidence 4466788999999999999999998766666666 1 2 3556666664422 12357999999986
No 109
>KOG1941|consensus
Probab=40.21 E-value=12 Score=43.26 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=27.0
Q ss_pred ccCCccccCCcchHHhHHHHhcCC--CCCccccc
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLKRH--KYCPICDV 38 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE~s--ksCPvCRk 38 (937)
+.--.+.|.|-|=-.|+..+++.+ ..||.||+
T Consensus 380 e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 380 ERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred ccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 334568999999999999999875 68999994
No 110
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.04 E-value=18 Score=32.91 Aligned_cols=14 Identities=21% Similarity=0.823 Sum_probs=9.6
Q ss_pred CcchHHhHHHHhcC
Q psy8409 16 FPVCKTCIVKYLKR 29 (937)
Q Consensus 16 HSFCKSCIvKyLE~ 29 (937)
--|||.|+.+|...
T Consensus 10 AgFCRNCLskWy~~ 23 (68)
T PF06844_consen 10 AGFCRNCLSKWYRE 23 (68)
T ss_dssp HS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35999999999854
No 111
>KOG0010|consensus
Probab=35.59 E-value=36 Score=40.21 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=38.2
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchh
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVM 177 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLM 177 (937)
+.=+.+....+|..||-.|+.+++.+.+ ++.++|.|.+|+++.||.
T Consensus 26 k~~~~V~~~ssV~qlKE~I~~~f~a~~d-qlvLIfaGrILKD~dTL~ 71 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKELIAQRFGAPPD-QLVLIYAGRILKDDDTLK 71 (493)
T ss_pred ceeEecccchHHHHHHHHHHHhcCCChh-HeeeeecCccccChhhHH
Confidence 4557788899999999999999988864 555555689999999993
No 112
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=35.13 E-value=67 Score=28.79 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=31.6
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECCe-----ec-CCCCch
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNE-----QL-TQNISV 176 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnGE-----pL-~ddyTL 176 (937)
.|.+..+||..||.-|....|++..++--+++.|. .| ++..+|
T Consensus 17 kr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L 65 (84)
T cd01789 17 KKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALL 65 (84)
T ss_pred EecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEe
Confidence 46789999999999999999998665444455554 34 455555
No 113
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=33.33 E-value=9.7 Score=27.65 Aligned_cols=22 Identities=27% Similarity=0.733 Sum_probs=14.3
Q ss_pred chHHhHHHHhcCCCCCcccccc
Q psy8409 18 VCKTCIVKYLKRHKYCPICDVL 39 (937)
Q Consensus 18 FCKSCIvKyLE~sksCPvCRk~ 39 (937)
||..|=.+.-+..+.||.|...
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 5666665555556778888754
No 114
>KOG1815|consensus
Probab=31.78 E-value=22 Score=40.36 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=25.5
Q ss_pred CCccccCCcchHHhHHHHhcCC--------CCCc--cccccccc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH--------KYCP--ICDVLVYK 42 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s--------ksCP--vCRk~Ihk 42 (937)
+..+.|+|-||..|+..|+... ..|| .|...++.
T Consensus 84 ~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~ 127 (444)
T KOG1815|consen 84 IIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGE 127 (444)
T ss_pred hhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCC
Confidence 5678999999999999999752 1344 67776643
No 115
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=30.84 E-value=40 Score=29.93 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=19.6
Q ss_pred cchHHhHHHHhcCCCCCcccccccc
Q psy8409 17 PVCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 17 SFCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
|||..|....+ ...||-|+-.+.
T Consensus 30 TFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 30 TFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred cccHHHHHHHh--cCcCcCCCCccc
Confidence 99999999887 467999998773
No 116
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=30.68 E-value=1.3e+02 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=41.6
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecC-----CCCchhhHHhhhccC--CCCCeEEEEE
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLT-----QNISVMDVAYIYQWK--KKTPMYLGYR 196 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~-----ddyTLMDfAyIYrWR--RksPMvL~YR 196 (937)
=||++...+...|..-|+.||+|+ ..++-+.|.++.=+ .+--| |.| |. +++=|.|+..
T Consensus 14 aIrvp~~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~s~~~v~l~d~dl-e~a----ws~~~~~~lTLwC~ 78 (80)
T cd06406 14 AIQVARGLSYATLLQKISSKLELP-AEHITLSYKSEASGEDVILSDTNM-EDV----WSQAKDGCLTLWCT 78 (80)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCC-chhcEEEeccCCCCCccCcChHHH-HHH----HHhhcCCeEEEEEe
Confidence 378999999999999999999998 35688888765332 34443 333 65 3566777654
No 117
>KOG1734|consensus
Probab=30.38 E-value=21 Score=39.77 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=29.4
Q ss_pred ccccccCCccccCCcchHHhHHHHhcCC--CCCcccccccccc
Q psy8409 3 TILHKSGPKLFFSFPVCKTCIVKYLKRH--KYCPICDVLVYKT 43 (937)
Q Consensus 3 aLLhkt~tTLECLHSFCKSCIvKyLE~s--ksCPvCRk~IhkS 43 (937)
|++.|+. .+.|.|.|=--||..+---. ..||-|+..+.-.
T Consensus 242 gvienty-~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 242 GVIENTY-KLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred hhhhhhe-eeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3444443 46899999999999875543 5799999877543
No 118
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.25 E-value=37 Score=31.66 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=20.2
Q ss_pred CCcchHHhHHHHhcCCCCCcccccccc
Q psy8409 15 SFPVCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 15 LHSFCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
-|+||..|....+. ..||-|.-.+.
T Consensus 28 EcTFCadCae~~l~--g~CPnCGGelv 52 (84)
T COG3813 28 ECTFCADCAENRLH--GLCPNCGGELV 52 (84)
T ss_pred eeehhHhHHHHhhc--CcCCCCCchhh
Confidence 57999999986664 47999998773
No 119
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=28.92 E-value=97 Score=27.03 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=32.4
Q ss_pred cCCccHHHHHHHHHHHcCCCCCceEEEE--ECCeecCCCCchhh
Q psy8409 137 KASAPVSILHKFLKNKFNLSNKHCVELV--CNNEQLTQNISVMD 178 (937)
Q Consensus 137 SArATVsHLKKFLAkKLdLpse~EVEIL--CnGEpL~ddyTLMD 178 (937)
+..+||..|++.|+.+.+....+++-|. ..|.+|.++-||.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~ 63 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVD 63 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhh
Confidence 6789999999999999765444555554 56889998889865
No 120
>COG4640 Predicted membrane protein [Function unknown]
Probab=27.25 E-value=23 Score=41.00 Aligned_cols=39 Identities=10% Similarity=0.315 Sum_probs=28.3
Q ss_pred cchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHH
Q psy8409 17 PVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVV 59 (937)
Q Consensus 17 SFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIV 59 (937)
.||.-|=..-.+....||+|+..+... +-..++.+.+|+
T Consensus 2 ~fC~kcG~qk~Ed~~qC~qCG~~~t~~----~sqan~~tn~i~ 40 (465)
T COG4640 2 KFCPKCGSQKAEDDVQCTQCGHKFTSR----QSQANKSTNEII 40 (465)
T ss_pred CcccccccccccccccccccCCcCCch----hhhhhHHHHHHH
Confidence 499999977777777799999888544 334555666555
No 121
>KOG0825|consensus
Probab=26.94 E-value=26 Score=43.48 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=20.3
Q ss_pred ccCCcchHHhHHHHhcCC------CCCccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRH------KYCPICDV 38 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~s------ksCPvCRk 38 (937)
.|+|.||-.||..+.+.- ..|+.|..
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 399999999999998742 35777764
No 122
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=23.84 E-value=1.5e+02 Score=25.79 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=32.9
Q ss_pred eEEecCC-ccHHHHHHHHHHHcC-CC-CCceEEEEECCeecCCCCchhh
Q psy8409 133 YLRCKAS-APVSILHKFLKNKFN-LS-NKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 133 YLRCSAr-ATVsHLKKFLAkKLd-Lp-se~EVEILCnGEpL~ddyTLMD 178 (937)
-+.++.. .||..|..+|..++. +. ....+-|++|++.+..+..|+|
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~d 67 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNE 67 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCC
Confidence 4556655 899999999999984 32 2234678899998886665543
No 123
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.77 E-value=18 Score=26.55 Aligned_cols=22 Identities=27% Similarity=0.721 Sum_probs=13.7
Q ss_pred chHHhHHHHhcCCCCCcccccc
Q psy8409 18 VCKTCIVKYLKRHKYCPICDVL 39 (937)
Q Consensus 18 FCKSCIvKyLE~sksCPvCRk~ 39 (937)
+|..|=...-...+.||.|...
T Consensus 4 ~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 4 FCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccCCcCCcccccChhhCCC
Confidence 5666666433345778888754
No 124
>KOG4445|consensus
Probab=22.87 E-value=18 Score=40.71 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.3
Q ss_pred ccCCccccCCcchHHhHHHHhc
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLK 28 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE 28 (937)
.+++.+.|.|-|=-.|+.||+.
T Consensus 129 ~~ft~T~C~Hy~H~~ClaRyl~ 150 (368)
T KOG4445|consen 129 PAFTVTACDHYMHFACLARYLT 150 (368)
T ss_pred CceeeehhHHHHHHHHHHHHHH
Confidence 4689999999998899999984
No 125
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=21.14 E-value=3.4e+02 Score=26.21 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEE--CC----eecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVC--NN----EQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILC--nG----EpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
..-+++....||..|-..|+.+++|......-|++ .+ ..|....+|+|+.. .| .+..|+||+.-.
T Consensus 15 ~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~--~~---~~~~l~fr~r~~ 85 (207)
T smart00295 15 TLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDV--KS---EPLTLYFRVKFY 85 (207)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcC--CC---CCcEEEEEEEEc
Confidence 35688889999999999999999997544444443 22 35666777766432 23 567888887664
No 126
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.09 E-value=55 Score=37.71 Aligned_cols=30 Identities=27% Similarity=0.689 Sum_probs=24.3
Q ss_pred CccccCCcchHHhHHHH--hcCCCCCcccccc
Q psy8409 10 PKLFFSFPVCKTCIVKY--LKRHKYCPICDVL 39 (937)
Q Consensus 10 tTLECLHSFCKSCIvKy--LE~sksCPvCRk~ 39 (937)
..++|+|.-|..|-+|. +-..+.||.||..
T Consensus 75 ~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 75 ARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred EeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 35789999999999875 3345889999975
No 127
>KOG0006|consensus
Probab=20.78 E-value=1.2e+02 Score=34.75 Aligned_cols=41 Identities=7% Similarity=0.254 Sum_probs=35.0
Q ss_pred ecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchh
Q psy8409 136 CKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVM 177 (937)
Q Consensus 136 CSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLM 177 (937)
+.....|..||+.++++++++. ++++|+.-|..|.++.|++
T Consensus 20 v~~~t~I~~lke~Vak~~gvp~-D~L~viFaGKeLs~~ttv~ 60 (446)
T KOG0006|consen 20 VDSDTSIFQLKEVVAKRQGVPA-DQLRVIFAGKELSNDTTVQ 60 (446)
T ss_pred EecCCCHHHHHHHHHHhhCCCh-hheEEEEeccccccCceee
Confidence 3346689999999999999996 5888888899999999975
No 128
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=20.23 E-value=59 Score=39.34 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=26.1
Q ss_pred cchHHhHHHHhcCCCCCccccccccccCC---CCCCCCchhhHHHHHHhcCC
Q psy8409 17 PVCKTCIVKYLKRHKYCPICDVLVYKTKP---LQSIRPDTRLQNVVYKLIPG 65 (937)
Q Consensus 17 SFCKSCIvKyLE~sksCPvCRk~IhkSrP---L~sLRpDrTLQdIVyKLVPg 65 (937)
.||..|=... ....||.|+..+..... --.-+.....+.||++..+.
T Consensus 16 kFC~~CG~~l--~~~~Cp~CG~~~~~~~~fC~~CG~~~~~~~~~~~~~~~~~ 65 (645)
T PRK14559 16 RFCQKCGTSL--THKPCPQCGTEVPVDEAHCPNCGAETGTIWWAIIAQASPN 65 (645)
T ss_pred ccccccCCCC--CCCcCCCCCCCCCcccccccccCCcccchhhhhccccccc
Confidence 4999994332 12457777766533211 01124566788888876543
Done!