Query psy8409
Match_columns 937
No_of_seqs 200 out of 580
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 18:01:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckl_A Polycomb group ring fin 99.5 1.8E-14 6.1E-19 126.0 4.3 81 4-84 24-104 (108)
2 2ckl_B Ubiquitin ligase protei 99.0 8.2E-11 2.8E-15 109.6 3.1 75 4-81 63-138 (165)
3 3fl2_A E3 ubiquitin-protein li 98.9 5.5E-10 1.9E-14 99.7 5.0 55 10-67 66-121 (124)
4 1t1h_A Gspef-atpub14, armadill 98.8 2E-09 6.8E-14 88.6 3.2 50 10-63 22-72 (78)
5 2y43_A E3 ubiquitin-protein li 98.8 3.1E-09 1.1E-13 91.4 3.6 54 5-62 32-85 (99)
6 4ayc_A E3 ubiquitin-protein li 98.7 4.2E-09 1.4E-13 96.2 4.1 61 9-75 66-126 (138)
7 1z6u_A NP95-like ring finger p 98.7 5.7E-09 1.9E-13 97.9 4.9 55 10-67 92-147 (150)
8 3ztg_A E3 ubiquitin-protein li 98.7 5.8E-09 2E-13 88.2 4.0 51 10-63 27-80 (92)
9 1jm7_B BARD1, BRCA1-associated 98.7 3E-09 1E-13 94.6 2.2 53 4-62 31-83 (117)
10 2kr4_A Ubiquitin conjugation f 98.7 7.6E-09 2.6E-13 88.7 3.1 50 10-63 28-77 (85)
11 3l11_A E3 ubiquitin-protein li 98.6 3.6E-09 1.2E-13 93.2 0.4 58 9-66 28-89 (115)
12 2c2l_A CHIP, carboxy terminus 98.6 8E-09 2.8E-13 100.2 2.4 51 9-63 221-272 (281)
13 3lrq_A E3 ubiquitin-protein li 98.6 9.7E-09 3.3E-13 89.5 2.6 54 5-62 32-86 (100)
14 2kre_A Ubiquitin conjugation f 98.6 1.6E-08 5.5E-13 89.7 3.8 51 9-63 42-92 (100)
15 3gs2_A E3 ubiquitin-protein li 98.6 9.6E-08 3.3E-12 88.4 8.7 85 112-197 4-109 (111)
16 1jm7_A BRCA1, breast cancer ty 98.6 1.3E-08 4.6E-13 88.1 2.4 50 10-63 35-87 (112)
17 2egp_A Tripartite motif-contai 98.6 4.7E-09 1.6E-13 85.9 -1.0 47 9-59 25-78 (79)
18 1wgm_A Ubiquitin conjugation f 98.6 3.1E-08 1.1E-12 87.6 3.9 51 9-63 35-86 (98)
19 2ecw_A Tripartite motif-contai 98.5 8.4E-09 2.9E-13 84.4 -0.8 46 10-59 33-84 (85)
20 2ecv_A Tripartite motif-contai 98.5 1.1E-08 3.9E-13 83.7 -0.4 47 9-59 32-84 (85)
21 2djb_A Polycomb group ring fin 98.5 4.1E-08 1.4E-12 80.3 2.8 45 5-49 25-69 (72)
22 2yu4_A E3 SUMO-protein ligase 98.5 3.1E-08 1.1E-12 86.0 1.2 56 4-63 16-80 (94)
23 3htk_C E3 SUMO-protein ligase 98.3 7.3E-08 2.5E-12 100.0 1.0 54 5-62 191-248 (267)
24 2csy_A Zinc finger protein 183 98.3 1.3E-07 4.5E-12 78.6 2.1 45 10-62 29-73 (81)
25 2f42_A STIP1 homology and U-bo 98.2 4E-07 1.4E-11 89.3 3.1 50 9-62 119-169 (179)
26 3hct_A TNF receptor-associated 98.2 2.9E-07 1E-11 81.9 1.7 50 10-63 32-82 (118)
27 2ct2_A Tripartite motif protei 98.2 3E-07 1E-11 76.3 1.4 34 9-42 32-68 (88)
28 1g25_A CDK-activating kinase a 98.2 5.3E-07 1.8E-11 72.2 2.5 33 11-43 23-56 (65)
29 3ng2_A RNF4, snurf, ring finge 98.2 4.6E-07 1.6E-11 72.7 2.0 34 10-43 31-64 (71)
30 1chc_A Equine herpes virus-1 r 98.1 2.9E-07 9.8E-12 73.8 -0.3 47 7-55 17-63 (68)
31 1rmd_A RAG1; V(D)J recombinati 98.1 1.2E-06 4E-11 77.3 3.4 49 11-62 38-87 (116)
32 2ea6_A Ring finger protein 4; 98.1 6.8E-07 2.3E-11 71.0 1.6 32 10-41 36-67 (69)
33 2yur_A Retinoblastoma-binding 98.1 6.1E-07 2.1E-11 74.0 1.0 31 10-40 29-62 (74)
34 2ecy_A TNF receptor-associated 98.1 2E-06 6.8E-11 69.0 3.7 33 10-42 29-62 (66)
35 2ect_A Ring finger protein 126 98.1 1.2E-06 4E-11 72.1 2.1 33 11-43 33-65 (78)
36 2ysl_A Tripartite motif-contai 98.1 1.7E-06 6E-11 69.9 3.0 33 10-42 34-69 (73)
37 2kiz_A E3 ubiquitin-protein li 98.1 1.5E-06 5E-11 70.0 2.6 35 9-43 30-64 (69)
38 2xeu_A Ring finger protein 4; 98.0 1.1E-06 3.8E-11 68.8 1.7 33 10-42 24-56 (64)
39 3knv_A TNF receptor-associated 98.0 1.1E-06 3.6E-11 82.0 1.8 58 4-62 40-103 (141)
40 2d8t_A Dactylidin, ring finger 98.0 1.9E-06 6.4E-11 70.3 1.7 33 10-42 29-61 (71)
41 1e4u_A Transcriptional repress 98.0 4E-06 1.4E-10 71.7 3.8 30 13-42 32-62 (78)
42 2ep4_A Ring finger protein 24; 97.9 2.6E-06 8.8E-11 69.4 2.1 32 11-42 33-64 (74)
43 2ecn_A Ring finger protein 141 97.9 2.1E-06 7E-11 69.3 1.4 34 10-43 28-61 (70)
44 2ecm_A Ring finger and CHY zin 97.9 1.9E-06 6.4E-11 66.3 0.9 32 9-40 22-53 (55)
45 3hcs_A TNF receptor-associated 97.9 2.5E-06 8.6E-11 79.7 1.7 54 4-62 27-81 (170)
46 4ap4_A E3 ubiquitin ligase RNF 97.9 3.4E-06 1.2E-10 73.8 2.4 33 10-42 28-60 (133)
47 1v87_A Deltex protein 2; ring- 97.9 5.5E-06 1.9E-10 72.5 3.1 32 11-42 58-94 (114)
48 2l0b_A E3 ubiquitin-protein li 97.9 4.1E-06 1.4E-10 71.9 2.0 32 10-41 57-88 (91)
49 1iym_A EL5; ring-H2 finger, ub 97.9 4.6E-06 1.6E-10 64.2 2.0 28 13-40 26-53 (55)
50 1x4j_A Ring finger protein 38; 97.8 3.7E-06 1.3E-10 69.0 1.0 32 10-41 40-71 (75)
51 2ysj_A Tripartite motif-contai 97.8 7.6E-06 2.6E-10 64.9 2.5 28 9-36 33-63 (63)
52 2ecj_A Tripartite motif-contai 97.7 1.5E-05 5E-10 61.7 2.8 28 9-36 28-58 (58)
53 4ap4_A E3 ubiquitin ligase RNF 97.6 1.8E-05 6E-10 69.3 1.7 34 10-43 93-126 (133)
54 2ecl_A Ring-box protein 2; RNF 97.5 2.8E-05 9.4E-10 65.8 2.2 30 12-41 46-75 (81)
55 1bor_A Transcription factor PM 97.5 2.7E-05 9.4E-10 61.7 1.4 31 8-41 18-48 (56)
56 1wim_A KIAA0161 protein; ring 97.4 4.7E-05 1.6E-09 65.3 1.5 28 12-39 24-61 (94)
57 4ic3_A E3 ubiquitin-protein li 97.2 8E-05 2.7E-09 62.0 1.0 30 9-42 37-67 (74)
58 3dpl_R Ring-box protein 1; ubi 97.2 0.00015 5.2E-09 65.4 2.5 31 10-40 69-99 (106)
59 2vje_B MDM4 protein; proto-onc 97.1 0.00011 3.7E-09 59.9 1.0 29 13-41 26-55 (63)
60 2vje_A E3 ubiquitin-protein li 97.1 0.00013 4.4E-09 59.6 1.4 29 13-41 27-56 (64)
61 2ecg_A Baculoviral IAP repeat- 97.0 0.00022 7.4E-09 59.2 2.2 30 9-42 38-68 (75)
62 2yho_A E3 ubiquitin-protein li 97.0 0.00012 4.1E-09 62.3 -0.0 45 9-58 31-76 (79)
63 2bay_A PRE-mRNA splicing facto 96.9 0.00014 4.8E-09 59.8 -0.0 31 13-43 21-51 (61)
64 4a0k_B E3 ubiquitin-protein li 96.7 0.00028 9.6E-09 65.2 0.0 29 12-40 82-110 (117)
65 2r2q_A Gamma-aminobutyric acid 96.6 0.011 3.9E-07 53.9 10.3 84 108-196 26-109 (110)
66 1eo6_A GATE-16, golgi-associat 96.5 0.015 5E-07 53.8 10.2 87 108-199 27-113 (117)
67 2zjd_A Microtubule-associated 96.4 0.018 6.2E-07 54.5 10.6 88 108-199 34-122 (130)
68 4gdk_A Ubiquitin-like protein 96.4 0.01 3.5E-07 53.1 8.3 72 125-198 15-87 (91)
69 3h9d_A ATG8, microtubule-assoc 96.2 0.032 1.1E-06 52.1 10.9 88 107-199 29-116 (119)
70 3rui_B Autophagy-related prote 96.2 0.031 1.1E-06 52.0 10.7 87 108-199 29-115 (118)
71 2ea5_A Cell growth regulator w 96.1 0.0016 5.4E-08 54.1 1.5 31 8-42 27-58 (68)
72 3m95_A Autophagy related prote 95.9 0.046 1.6E-06 51.6 10.3 87 108-199 35-121 (125)
73 3vk6_A E3 ubiquitin-protein li 95.5 0.0052 1.8E-07 56.6 2.2 32 10-41 16-48 (101)
74 3w1s_C Ubiquitin-like protein 94.4 0.095 3.2E-06 47.1 7.2 68 126-198 19-87 (91)
75 1wz3_A Autophagy 12B, ATG12B, 94.4 0.17 6E-06 45.6 8.9 80 109-199 13-93 (96)
76 3n3k_B Ubiquitin; hydrolase, p 94.2 0.12 3.9E-06 42.5 6.9 63 132-199 16-78 (85)
77 3k9o_B Ubiquitin, UBB+1; E2-25 94.1 0.14 4.9E-06 43.3 7.3 64 132-200 14-77 (96)
78 3a9j_A Ubiquitin; protein comp 93.7 0.21 7.3E-06 39.7 7.4 61 132-197 13-73 (76)
79 1ndd_A NEDD8, protein (ubiquit 93.5 0.25 8.7E-06 39.2 7.4 60 133-197 14-73 (76)
80 3mtn_B UBA80, ubcep1, ubiquiti 93.4 0.17 5.7E-06 41.4 6.4 63 132-199 16-78 (85)
81 3plu_A Ubiquitin-like modifier 93.0 0.24 8.4E-06 44.7 7.4 59 132-195 34-92 (93)
82 2bwf_A Ubiquitin-like protein 93.0 0.18 6.3E-06 40.5 6.0 47 132-179 16-62 (77)
83 2d8s_A Cellular modulator of i 93.0 0.033 1.1E-06 48.0 1.6 31 11-41 32-69 (80)
84 4dwf_A HLA-B-associated transc 92.8 0.19 6.6E-06 42.1 6.1 62 132-199 18-79 (90)
85 4eew_A Large proline-rich prot 92.7 0.21 7.2E-06 41.7 6.1 46 132-178 30-75 (88)
86 2dzi_A Ubiquitin-like protein 92.7 0.28 9.6E-06 39.8 6.7 59 133-196 21-79 (81)
87 3phx_B Ubiquitin-like protein 92.4 0.48 1.6E-05 38.7 7.8 61 132-197 17-77 (79)
88 3dbh_I NEDD8; cell cycle, acti 92.3 0.23 7.8E-06 41.1 5.9 61 132-197 25-85 (88)
89 3v6c_B Ubiquitin; structural g 92.2 0.34 1.2E-05 41.1 6.9 60 132-196 30-89 (91)
90 4hcn_B Polyubiquitin, ubiquiti 92.2 0.26 8.8E-06 42.7 6.2 61 132-197 35-95 (98)
91 4fbj_B NEDD8; effector-HOST ta 92.0 0.34 1.2E-05 41.2 6.6 64 132-200 13-76 (88)
92 1wh3_A 59 kDa 2'-5'-oligoadeny 91.9 0.36 1.2E-05 40.0 6.6 63 132-199 20-82 (87)
93 2uyz_B Small ubiquitin-related 91.0 0.38 1.3E-05 39.3 5.8 61 132-197 16-76 (79)
94 1wx7_A Ubiquilin 3; ubiquitin- 91.0 0.54 1.8E-05 41.2 7.0 63 133-200 30-92 (106)
95 3vdz_A Ubiquitin-40S ribosomal 90.9 0.58 2E-05 41.7 7.3 62 132-198 48-109 (111)
96 2fnj_B Transcription elongatio 90.7 0.57 1.9E-05 43.7 7.2 63 132-196 14-80 (118)
97 1wy8_A NP95-like ring finger p 90.4 0.55 1.9E-05 39.2 6.3 63 133-200 22-85 (89)
98 1yx5_B Ubiquitin; proteasome, 90.4 0.47 1.6E-05 40.7 6.0 63 132-199 13-75 (98)
99 2faz_A Ubiquitin-like containi 90.3 0.89 3.1E-05 36.9 7.3 59 133-196 17-76 (78)
100 1wx8_A Riken cDNA 4931431F19; 90.3 0.31 1.1E-05 41.6 4.7 46 133-179 30-75 (96)
101 1sif_A Ubiquitin; hydrophobic 89.9 0.44 1.5E-05 40.4 5.4 63 132-199 22-84 (88)
102 2klc_A Ubiquilin-1; ubiquitin- 89.7 0.5 1.7E-05 41.4 5.7 60 133-197 38-97 (101)
103 2kd0_A LRR repeats and ubiquit 89.6 0.47 1.6E-05 40.4 5.3 46 133-179 25-70 (85)
104 2ct0_A Non-SMC element 1 homol 89.5 0.2 6.9E-06 43.1 3.0 30 12-41 32-63 (74)
105 3m62_B UV excision repair prot 89.3 0.57 1.9E-05 41.4 5.8 62 132-198 14-75 (106)
106 2kk8_A Uncharacterized protein 89.3 0.69 2.3E-05 39.4 6.1 47 132-179 23-70 (84)
107 1wgd_A Homocysteine-responsive 89.2 0.6 2.1E-05 39.8 5.7 46 133-179 23-70 (93)
108 1wyw_B Ubiquitin-like protein 89.2 0.9 3.1E-05 39.4 6.9 61 132-197 34-94 (97)
109 1yqb_A Ubiquilin 3; structural 89.2 0.64 2.2E-05 40.8 6.0 62 133-199 35-96 (100)
110 2l7r_A Ubiquitin-like protein 89.1 0.59 2E-05 40.2 5.6 46 133-179 31-76 (93)
111 2wyq_A HHR23A, UV excision rep 89.1 0.81 2.8E-05 37.6 6.2 46 133-179 19-67 (85)
112 1j8c_A Ubiquitin-like protein 88.7 0.63 2.1E-05 42.7 5.8 63 133-200 45-107 (125)
113 1uh6_A Ubiquitin-like 5; beta- 88.7 0.64 2.2E-05 42.2 5.7 57 134-195 43-99 (100)
114 2kan_A Uncharacterized protein 88.4 0.83 2.8E-05 39.7 6.1 62 132-198 27-89 (94)
115 3m63_B Ubiquitin domain-contai 88.1 0.44 1.5E-05 42.0 4.2 46 133-179 41-86 (101)
116 2hj8_A Interferon-induced 17 k 88.0 0.68 2.3E-05 39.2 5.2 64 132-200 17-80 (88)
117 2ojr_A Ubiquitin; lanthide-bin 87.1 1.5 5.2E-05 38.8 7.1 61 132-197 48-108 (111)
118 1ttn_A DC-UBP, dendritic cell- 87.0 0.72 2.5E-05 40.6 4.9 59 133-196 37-95 (106)
119 1wju_A NEDD8 ultimate buster-1 86.8 1.1 3.9E-05 40.6 6.2 48 130-178 30-77 (100)
120 1uel_A HHR23B, UV excision rep 86.2 1.4 4.9E-05 37.8 6.3 46 133-179 14-62 (95)
121 3b08_A Polyubiquitin-C, ubiqui 85.8 2.2 7.4E-05 38.1 7.5 63 131-198 88-150 (152)
122 2kdb_A Homocysteine-responsive 85.7 0.97 3.3E-05 40.3 5.1 47 133-179 39-86 (99)
123 1x1m_A Ubiquitin-like protein 85.5 1.4 4.8E-05 38.9 6.0 41 139-179 44-86 (107)
124 1we7_A SF3A1 protein; structur 85.1 1.4 4.9E-05 39.2 5.9 64 132-200 48-111 (115)
125 1v5o_A 1700011N24RIK protein; 84.9 1.1 3.9E-05 39.1 5.1 45 134-179 26-71 (102)
126 2kdi_A Ubiquitin, vacuolar pro 84.8 1.3 4.3E-05 39.9 5.5 64 132-200 22-85 (114)
127 3rt3_B Ubiquitin-like protein 84.6 1.4 4.8E-05 40.4 5.8 48 132-179 15-63 (159)
128 3b08_A Polyubiquitin-C, ubiqui 84.3 1.6 5.4E-05 39.0 5.9 46 133-179 14-59 (152)
129 3l0w_B Monoubiquitinated proli 84.0 1.7 5.9E-05 41.6 6.4 64 132-200 13-76 (169)
130 4dbg_A Ranbp-type and C3HC4-ty 83.5 1.7 5.7E-05 39.8 5.8 46 132-178 39-84 (105)
131 1wxv_A BAG-family molecular ch 83.1 2 6.8E-05 36.4 5.7 46 133-179 20-71 (92)
132 1wia_A Hypothetical ubiquitin- 82.8 1.9 6.4E-05 36.8 5.5 44 132-179 20-64 (95)
133 2daf_A FLJ35834 protein; hypot 82.6 1.7 5.8E-05 41.0 5.5 45 133-178 30-74 (118)
134 3b1l_X E3 ubiquitin-protein li 83.1 0.26 8.9E-06 39.8 0.0 60 133-197 14-73 (76)
135 3rt3_B Ubiquitin-like protein 82.0 3.7 0.00013 37.6 7.5 64 131-199 93-156 (159)
136 3u30_A Ubiquitin, linear DI-ub 81.7 2.2 7.5E-05 39.9 6.0 47 132-179 33-79 (172)
137 1we6_A Splicing factor, putati 81.0 1.6 5.3E-05 38.7 4.5 61 134-199 45-106 (111)
138 4a20_A Ubiquitin-like protein 79.2 2.3 7.9E-05 37.9 4.9 44 134-178 36-80 (98)
139 2lxa_A Ubiquitin-like protein 78.5 2.7 9.1E-05 36.7 5.1 43 136-179 20-63 (87)
140 1v5t_A 8430435I17RIK protein; 77.6 3.3 0.00011 35.4 5.3 45 134-179 21-69 (90)
141 4ajy_B Transcription elongatio 76.9 3.4 0.00012 38.7 5.6 47 132-179 14-60 (118)
142 3q3f_A Ribonuclease/ubiquitin 75.8 2.9 0.0001 41.4 5.1 63 132-199 118-180 (189)
143 2jun_A Midline-1; B-BOX, TRIM, 75.0 0.99 3.4E-05 38.8 1.4 19 100-118 69-87 (101)
144 3u30_A Ubiquitin, linear DI-ub 75.0 3.4 0.00012 38.6 5.1 62 131-197 108-169 (172)
145 1wgg_A Ubiquitin carboxyl-term 74.6 2.5 8.4E-05 36.9 3.8 43 134-178 22-64 (96)
146 4b6w_A Tubulin-specific chaper 72.7 3.4 0.00011 35.8 4.1 45 134-178 19-69 (86)
147 1wgh_A Ubiquitin-like 3, HCG-1 71.5 4.9 0.00017 37.1 5.2 47 132-178 29-82 (116)
148 3u5e_m 60S ribosomal protein L 71.0 0.85 2.9E-05 41.5 0.0 68 133-205 14-81 (128)
149 3a4r_A Nfatc2-interacting prot 70.6 8.8 0.0003 32.5 6.1 48 131-179 20-67 (79)
150 1v86_A DNA segment, CHR 7, way 69.7 2.9 9.8E-05 36.3 3.0 44 133-178 30-73 (95)
151 2ko5_A Ring finger protein Z; 67.0 1.9 6.5E-05 39.9 1.4 32 11-42 41-73 (99)
152 1wm3_A Ubiquitin-like protein 66.1 9 0.00031 31.7 5.2 48 131-179 13-60 (72)
153 1v6e_A Cytoskeleton-associated 66.0 6.6 0.00023 33.8 4.6 46 133-178 22-73 (95)
154 2gow_A HCG-1 protein, ubiquiti 64.9 4.5 0.00015 37.7 3.5 48 131-178 29-83 (125)
155 2kjr_A CG11242; UBL, ubiquitin 62.8 13 0.00044 32.8 5.9 67 104-178 10-81 (95)
156 1v2y_A 3300001G02RIK protein; 62.7 3 0.0001 37.9 1.9 62 133-198 21-97 (105)
157 3ai5_A Yeast enhanced green fl 62.2 9 0.00031 40.6 5.6 47 132-179 246-292 (307)
158 3u5c_f 40S ribosomal protein S 62.1 1.6 5.6E-05 41.7 0.0 63 133-200 14-76 (152)
159 2io1_B Small ubiquitin-related 61.9 11 0.00038 33.1 5.3 62 131-197 19-80 (94)
160 2io0_B Small ubiquitin-related 59.3 15 0.0005 32.4 5.5 48 131-179 17-64 (91)
161 2kj6_A Tubulin folding cofacto 58.4 14 0.00048 32.8 5.4 64 107-178 12-81 (97)
162 1se9_A Ubiquitin family; ubiqu 58.1 28 0.00096 32.8 7.6 45 134-178 32-82 (126)
163 2k8h_A Small ubiquitin protein 57.8 29 0.00099 31.7 7.4 47 132-179 39-85 (110)
164 2d07_B Ubiquitin-like protein 55.0 18 0.00063 31.6 5.4 47 132-179 30-76 (93)
165 1oqy_A HHR23A, UV excision rep 53.5 9.3 0.00032 41.2 4.0 46 133-179 21-69 (368)
166 1wz0_A Ubiquitin-like protein 52.8 20 0.00068 32.3 5.4 48 131-179 36-83 (104)
167 1t0y_A Tubulin folding cofacto 50.7 25 0.00085 31.8 5.8 46 133-178 21-72 (122)
168 3goe_A DNA repair protein RAD6 48.4 29 0.00099 31.3 5.6 48 132-179 22-69 (82)
169 2eke_C Ubiquitin-like protein 48.2 39 0.0013 30.8 6.6 48 131-179 42-89 (106)
170 3m62_A Ubiquitin conjugation f 47.5 11 0.00037 45.6 3.7 50 10-63 905-955 (968)
171 3kyd_D Small ubiquitin-related 46.2 42 0.0014 31.2 6.6 47 132-179 53-99 (115)
172 2dzm_A FAS-associated factor 1 41.8 25 0.00087 31.5 4.3 46 134-179 23-68 (100)
173 2dzj_A Synaptic glycoprotein S 41.7 16 0.00055 31.5 2.9 45 134-178 27-74 (88)
174 1oey_A P67-PHOX, neutrophil cy 40.4 22 0.00076 31.6 3.7 59 132-196 16-81 (83)
175 2xzm_9 RPS31E; ribosome, trans 38.0 7.4 0.00025 38.9 0.3 58 133-200 14-71 (189)
176 1wf9_A NPL4 family protein; be 37.4 17 0.00058 32.1 2.4 47 133-179 20-81 (107)
177 2gmg_A Hypothetical protein PF 35.1 13 0.00044 34.7 1.3 30 5-39 64-93 (105)
178 1wjn_A Tubulin-folding protein 31.7 52 0.0018 28.2 4.5 44 134-177 27-77 (97)
179 2jxx_A Nfatc2-interacting prot 30.8 91 0.0031 28.1 6.1 48 131-179 38-85 (97)
180 3i2d_A E3 SUMO-protein ligase 30.3 21 0.00073 39.0 2.3 48 11-62 265-316 (371)
181 3pge_A SUMO-modified prolifera 30.0 64 0.0022 32.5 5.5 48 131-179 40-87 (200)
182 2o35_A Hypothetical protein DU 29.8 16 0.00055 34.1 1.1 14 16-29 41-54 (105)
183 3fyb_A Protein of unknown func 29.7 16 0.00056 34.1 1.1 14 16-29 40-53 (104)
184 2kzr_A Ubiquitin thioesterase 27.2 45 0.0015 28.0 3.3 44 134-178 14-63 (86)
185 1vyx_A ORF K3, K3RING; zinc-bi 25.6 32 0.0011 28.1 2.0 24 17-40 32-57 (60)
186 4fo9_A E3 SUMO-protein ligase 23.4 34 0.0012 37.3 2.3 47 12-62 232-282 (360)
187 3tix_A Ubiquitin-like protein 20.6 81 0.0028 32.4 4.2 48 131-179 68-115 (207)
No 1
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.47 E-value=1.8e-14 Score=125.96 Aligned_cols=81 Identities=48% Similarity=0.935 Sum_probs=71.2
Q ss_pred cccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhcCCchhhhHHhHhhhcccCCc
Q psy8409 4 ILHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGLYEKEMQRRQMFFSSTPI 83 (937)
Q Consensus 4 LLhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL~esEmeRRREFYkKhg~ 83 (937)
++.+...++.|||+||+.||.+++.....||.|+..+....|+..++.|..|++|++++++++++.|+.+|++||++++.
T Consensus 24 ~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~e~~~~~~~~~~~~~ 103 (108)
T 2ckl_A 24 YFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPS 103 (108)
T ss_dssp BCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTHHHHHHHHHHHHHHHSCC
T ss_pred HHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhHHHHHHHhHHHHHHhCcc
Confidence 34444444599999999999999998899999999998777777899999999999999999999999999999999976
Q ss_pred c
Q psy8409 84 Q 84 (937)
Q Consensus 84 q 84 (937)
.
T Consensus 104 ~ 104 (108)
T 2ckl_A 104 A 104 (108)
T ss_dssp -
T ss_pred c
Confidence 4
No 2
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.02 E-value=8.2e-11 Score=109.64 Aligned_cols=75 Identities=23% Similarity=0.470 Sum_probs=47.7
Q ss_pred cccccCCccccCCcchHHhHHHHhcC-CCCCccccccccccCCCCCCCCchhhHHHHHHhcCCchhhhHHhHhhhcccC
Q psy8409 4 ILHKSGPKLFFSFPVCKTCIVKYLKR-HKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGLYEKEMQRRQMFFSST 81 (937)
Q Consensus 4 LLhkt~tTLECLHSFCKSCIvKyLE~-sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL~esEmeRRREFYkKh 81 (937)
++.+...++.|||+||+.||.+||.. ...||+||..+... ..+++|..|++||.+++++..+.|.++++.|++..
T Consensus 63 ~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~---~~l~~~~~l~~~i~~~~~~~~~~~~~~e~~~~~~~ 138 (165)
T 2ckl_B 63 MLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK---RSLRPDPNFDALISKIYPSRDEYEAHQERVLARIN 138 (165)
T ss_dssp BCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG---GGEEECHHHHHHHHHHC------------------
T ss_pred HhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc---ccCCcCHHHHHHHHHHHcchhHHHHHHHHHHHHHH
Confidence 34454445699999999999999987 57899999988543 26899999999999999998777666666555443
No 3
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.93 E-value=5.5e-10 Score=99.73 Aligned_cols=55 Identities=24% Similarity=0.496 Sum_probs=47.1
Q ss_pred CccccCCcchHHhHHHHhcCC-CCCccccccccccCCCCCCCCchhhHHHHHHhcCCch
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGLY 67 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL~ 67 (937)
.++.|||+||+.||.+||... ..||.||..+.... .+++|..|+++|++++|+..
T Consensus 66 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~---~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 66 ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSY---AMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC---CCCCCHHHHHHHHHHSTTTT
T ss_pred EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCC---CCCCCHHHHHHHHHHccccc
Confidence 456999999999999999854 58999999885422 68999999999999999863
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.79 E-value=2e-09 Score=88.57 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=43.1
Q ss_pred CccccCCcchHHhHHHHhcC-CCCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKR-HKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~-sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
.++.|||+||+.||.+||.. ...||+|+..+... .+.+|..|+++|..+.
T Consensus 22 v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~----~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 22 VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA----GLTPNYVLKSLIALWC 72 (78)
T ss_dssp EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC----CCEECTTTHHHHHHHH
T ss_pred EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh----hCccCHHHHHHHHHHH
Confidence 45689999999999999987 57899999988543 6899999999998773
No 5
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.77 E-value=3.1e-09 Score=91.39 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=45.2
Q ss_pred ccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 5 LHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 5 Lhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
+.+...++.|||+||+.||.+|+.....||+||..+... .+++|..|+++|+++
T Consensus 32 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~----~l~~n~~l~~~i~~~ 85 (99)
T 2y43_A 32 FNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP----DLKNNRILDELVKSL 85 (99)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG----GCEECHHHHHHHHHH
T ss_pred hCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh----hCCcCHHHHHHHHHH
Confidence 344333458999999999999999888999999988543 689999999999887
No 6
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.75 E-value=4.2e-09 Score=96.22 Aligned_cols=61 Identities=26% Similarity=0.478 Sum_probs=44.1
Q ss_pred CCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhcCCchhhhHHhHh
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGLYEKEMQRRQ 75 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL~esEmeRRR 75 (937)
..++.|||+||+.||.+||.....||+||..+... ..+..+..++.+++..+.....+||.
T Consensus 66 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~------~~~~~~~~~i~~~~~~l~~~~~~rr~ 126 (138)
T 4ayc_A 66 AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK------TYSLVLDNCINKMVNNLSSEVKERRI 126 (138)
T ss_dssp EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE------EECHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC------CCccchhHHHHHHHHHhhHHHHHHHH
Confidence 35679999999999999999889999999988432 23555666666666666544444443
No 7
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.74 E-value=5.7e-09 Score=97.87 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=47.0
Q ss_pred CccccCCcchHHhHHHHhcCC-CCCccccccccccCCCCCCCCchhhHHHHHHhcCCch
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLIPGLY 67 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLVPgL~ 67 (937)
.++.|||+||+.||.+++... ..||+||..+.... .+.+|..|++||++++|+..
T Consensus 92 v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~---~l~~n~~l~~lv~~~~p~~~ 147 (150)
T 1z6u_A 92 VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY---IMIPNEILQTLLDLFFPGYS 147 (150)
T ss_dssp EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC---CCCBCHHHHHHHHHHSTTTT
T ss_pred EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCC---CCCCCHHHHHHHHHHhhHhh
Confidence 347999999999999999875 48999999885432 68999999999999998764
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.72 E-value=5.8e-09 Score=88.19 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=42.0
Q ss_pred Cccc-cCCcchHHhHHHHhcCC--CCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 10 PKLF-FSFPVCKTCIVKYLKRH--KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 10 tTLE-CLHSFCKSCIvKyLE~s--ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
.++. |||+||+.||.++|... ..||+||..+... ..+++|..|+++|+++.
T Consensus 27 ~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~---~~~~~n~~l~~~i~~~~ 80 (92)
T 3ztg_A 27 VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP---DALIANKFLRQAVNNFK 80 (92)
T ss_dssp EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT---TSCEECHHHHHHHHHHH
T ss_pred eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc---cccCcCHHHHHHHHHHH
Confidence 4566 99999999999999753 5899999986322 26899999999998883
No 9
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=3e-09 Score=94.61 Aligned_cols=53 Identities=17% Similarity=0.365 Sum_probs=43.0
Q ss_pred cccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 4 ILHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 4 LLhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
++.+...+..|||+||+.||.++|. ..||+||..+.. ..+++|+.|++||..+
T Consensus 31 ~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~----~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 31 ILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI----QDLKINRQLDSMIQLC 83 (117)
T ss_dssp CCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC----SSCCCCHHHHHHHHHH
T ss_pred HhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc----ccccccHHHHHHHHHH
Confidence 3444444449999999999999997 789999998843 2789999999999876
No 10
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.67 E-value=7.6e-09 Score=88.72 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=43.9
Q ss_pred CccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
.++.|||+|||+||.+||.....||+|+..+... .|.+|..|.++|..+.
T Consensus 28 V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~----~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 28 VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES----MLEPVPELKEQIQAWM 77 (85)
T ss_dssp EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG----GCEECHHHHHHHHHHH
T ss_pred eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH----hcchHHHHHHHHHHHH
Confidence 4567999999999999999878999999988543 7999999999998773
No 11
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.65 E-value=3.6e-09 Score=93.19 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=46.5
Q ss_pred CCccccCCcchHHhHHHHhcC-CCCCccccccccc---cCCCCCCCCchhhHHHHHHhcCCc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKR-HKYCPICDVLVYK---TKPLQSIRPDTRLQNVVYKLIPGL 66 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~-sksCPvCRk~Ihk---SrPL~sLRpDrTLQdIVyKLVPgL 66 (937)
..++.|||+||+.||.+++.. ...||.||..+.. .....++..|..|.+++.+++|..
T Consensus 28 p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~ 89 (115)
T 3l11_A 28 PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRE 89 (115)
T ss_dssp CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHH
T ss_pred eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHH
Confidence 445699999999999999987 4689999998853 111236788999999999998763
No 12
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.63 E-value=8e-09 Score=100.24 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCccccCCcchHHhHHHHhcCC-CCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
..++.|||+|||+||.+||..+ ..||+|+..+... .+.+|..|.++|..+.
T Consensus 221 Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~----~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 221 PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE----QLIPNLAMKEVIDAFI 272 (281)
T ss_dssp EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG----GCEECHHHHHHHHHHH
T ss_pred CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh----cCcccHHHHHHHHHHH
Confidence 3467799999999999999874 4599999988543 6899999999998774
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.63 E-value=9.7e-09 Score=89.48 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=44.2
Q ss_pred ccccCCccccCCcchHHhHHHHhcCC-CCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 5 LHKSGPKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 5 Lhkt~tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
+.+...++.|||+||+.||.+||... ..||+||..+... .++.++.+++|+..+
T Consensus 32 ~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~----~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 32 LRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR----ELVNCRWAEEVTQQL 86 (100)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG----GCEECTTHHHHHHHH
T ss_pred ccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH----HhHhhHHHHHHHHHH
Confidence 44444448999999999999999987 6899999988543 688889999988765
No 14
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.62 E-value=1.6e-08 Score=89.69 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=44.2
Q ss_pred CCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
..++.|||+|||+||.+||.....||+|+..+... .|.+|..|.++|..+.
T Consensus 42 PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~----~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 42 PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES----MLEPVPELKEQIQAWM 92 (100)
T ss_dssp EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT----SSEECHHHHHHHHHHH
T ss_pred CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh----hceECHHHHHHHHHHH
Confidence 34567999999999999999888999999988543 7999999999998773
No 15
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=98.61 E-value=9.6e-08 Score=88.43 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=62.9
Q ss_pred EEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCC----------------CceEEEEEC---C--eec
Q psy8409 112 ITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSN----------------KHCVELVCN---N--EQL 170 (937)
Q Consensus 112 LCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLps----------------e~EVEILCn---G--EpL 170 (937)
|.|++........+......|||++++.+||.||.|||++++.|+. ..+..|++. | ..|
T Consensus 4 iELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~L 83 (111)
T 3gs2_A 4 IELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVL 83 (111)
T ss_dssp EEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEEC
T ss_pred eEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEEc
Confidence 4455555442211122356799999999999999999999987651 225667754 3 389
Q ss_pred CCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 171 TQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 171 ~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
...+|| +.+...+|+.+.||+|+|..
T Consensus 84 ~gs~tL-e~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 84 DGSFSL-ELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CTTSBH-HHHHHHHTCSSSCEEEEEEE
T ss_pred cCcccH-HHHhhhhccCCCCeeEEecc
Confidence 999999 55678899999999999974
No 16
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=1.3e-08 Score=88.07 Aligned_cols=50 Identities=28% Similarity=0.578 Sum_probs=42.0
Q ss_pred CccccCCcchHHhHHHHhcCC---CCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRH---KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~s---ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
.++.|||+||+.||.+++... ..||.||..+... .++.+..|+++++.+.
T Consensus 35 ~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~----~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 35 VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR----SLQESTRFSQLVEELL 87 (112)
T ss_dssp CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT----TCBCCCSSSHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh----hcCccHHHHHHHHHHH
Confidence 457899999999999999864 4899999988543 6888888999998875
No 17
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.57 E-value=4.7e-09 Score=85.88 Aligned_cols=47 Identities=23% Similarity=0.520 Sum_probs=38.2
Q ss_pred CCccccCCcchHHhHHHHhcC-------CCCCccccccccccCCCCCCCCchhhHHHH
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKR-------HKYCPICDVLVYKTKPLQSIRPDTRLQNVV 59 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~-------sksCPvCRk~IhkSrPL~sLRpDrTLQdIV 59 (937)
..++.|||+||+.||.+|+.. ...||.||..+... .+++|..|++||
T Consensus 25 p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~----~l~~n~~l~~lv 78 (79)
T 2egp_A 25 PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE----HLQANQHLANIV 78 (79)
T ss_dssp CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS----GGGTCSSSCCCC
T ss_pred eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh----hCCcCHHHHHhh
Confidence 345789999999999999986 46899999988532 688888887765
No 18
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.56 E-value=3.1e-08 Score=87.58 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCccccC-CcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 9 GPKLFFS-FPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 9 ~tTLECL-HSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
..++.|| |+|||.||.+||.....||+|+..+... .|.+|..|.++|..+.
T Consensus 35 PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~----~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 35 PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD----QIRPNTELKEKIQRWL 86 (98)
T ss_dssp EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT----TSEECHHHHHHHHHHH
T ss_pred CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh----hceEcHHHHHHHHHHH
Confidence 3567899 9999999999999888899999988543 7999999999998773
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.52 E-value=8.4e-09 Score=84.44 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=38.1
Q ss_pred CccccCCcchHHhHHHHhcC------CCCCccccccccccCCCCCCCCchhhHHHH
Q psy8409 10 PKLFFSFPVCKTCIVKYLKR------HKYCPICDVLVYKTKPLQSIRPDTRLQNVV 59 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~------sksCPvCRk~IhkSrPL~sLRpDrTLQdIV 59 (937)
.++.|+|+||+.||.++|.. ...||.||..+... .+++|..|++||
T Consensus 33 ~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~----~~~~n~~l~~~v 84 (85)
T 2ecw_A 33 VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG----NLKPNLHVANIV 84 (85)
T ss_dssp EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT----CCEECSCCCSSC
T ss_pred eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH----hCCcCHHHHHhh
Confidence 36789999999999999987 56899999988543 688888887765
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.1e-08 Score=83.67 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=38.5
Q ss_pred CCccccCCcchHHhHHHHhcC------CCCCccccccccccCCCCCCCCchhhHHHH
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKR------HKYCPICDVLVYKTKPLQSIRPDTRLQNVV 59 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~------sksCPvCRk~IhkSrPL~sLRpDrTLQdIV 59 (937)
..++.|||+||+.||.+++.. ...||.||..+... .+++|..|++||
T Consensus 32 p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~----~~~~n~~l~~~v 84 (85)
T 2ecv_A 32 PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE----NIRPNRHVANIV 84 (85)
T ss_dssp CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS----SCCCSCCCCCCC
T ss_pred ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH----hcCccHHHHHhh
Confidence 345689999999999999876 57899999988543 688888887765
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4.1e-08 Score=80.26 Aligned_cols=45 Identities=29% Similarity=0.569 Sum_probs=35.9
Q ss_pred ccccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCC
Q psy8409 5 LHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSI 49 (937)
Q Consensus 5 Lhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sL 49 (937)
+.+...++.|||+||+.||.+|+.....||+||..+....++.++
T Consensus 25 ~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 25 LIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred HHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 444444459999999999999998888999999999776655444
No 22
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=3.1e-08 Score=85.98 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=42.9
Q ss_pred cccccCCccccCCcchHHhHHHHhcCC------CCCcc--cccc-ccccCCCCCCCCchhhHHHHHHhc
Q psy8409 4 ILHKSGPKLFFSFPVCKTCIVKYLKRH------KYCPI--CDVL-VYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 4 LLhkt~tTLECLHSFCKSCIvKyLE~s------ksCPv--CRk~-IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
++.+-.++..|||+|||.||.+||... ..||+ |+.. +... .|++|..|+++|..+.
T Consensus 16 ~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~----~L~pn~~L~~~I~~~~ 80 (94)
T 2yu4_A 16 EMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS----DLIQDEALRRAIENHN 80 (94)
T ss_dssp BCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG----GEEECHHHHHHHHHHH
T ss_pred hhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh----hCcCCHHHHHHHHHHH
Confidence 344433333699999999999999863 48999 9976 5333 7999999999998773
No 23
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.35 E-value=7.3e-08 Score=99.98 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=44.2
Q ss_pred ccccCCccccCCcchHHhHHHHhcCC--CCCcc--ccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 5 LHKSGPKLFFSFPVCKTCIVKYLKRH--KYCPI--CDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 5 Lhkt~tTLECLHSFCKSCIvKyLE~s--ksCPv--CRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
+.+-.+++.|||+|||.||.+||+.. ..||+ |++.+... +|++|+.|+++|...
T Consensus 191 f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~----dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 191 YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR----DFVRDPIMELRCKIA 248 (267)
T ss_dssp CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG----GEEECHHHHHHHHHH
T ss_pred ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh----hCCcCHHHHHHHHHH
Confidence 34444456999999999999999874 57999 99988544 799999999999765
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.3e-07 Score=78.63 Aligned_cols=45 Identities=20% Similarity=0.388 Sum_probs=35.2
Q ss_pred CccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
.++.|||+||+.||.+++.....||+||..+. . .+.++ .+|++++
T Consensus 29 ~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~----~~~~~---~~l~~~~ 73 (81)
T 2csy_A 29 VVTKCRHYFCESCALEHFRATPRCYICDQPTG-G----IFNPA---KELMAKL 73 (81)
T ss_dssp EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-S----CCEEC---HHHHHHH
T ss_pred eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-c----cCCcH---HHHHHHH
Confidence 45799999999999999988889999999884 1 45666 4444444
No 25
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.23 E-value=4e-07 Score=89.30 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=42.7
Q ss_pred CCccccCCcchHHhHHHHhcCC-CCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
..++.|||+|||+||.+||..+ ..||+|+..+... .|.+|..|.++|..+
T Consensus 119 PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~----~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 119 PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD----QLIPNLAMKEVIDAF 169 (179)
T ss_dssp EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG----GCEECHHHHHHHHHH
T ss_pred CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh----hCcchHHHHHHHHHH
Confidence 3456899999999999999864 5699999988543 799999999999876
No 26
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.22 E-value=2.9e-07 Score=81.93 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=41.1
Q ss_pred CccccCCcchHHhHHHHhcCC-CCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
.++.|||+||+.||.+++... ..||+||..+... .+.+|..++.++..+.
T Consensus 32 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~----~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 32 VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN----QLFPDNFAKREILSLM 82 (118)
T ss_dssp EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG----GCEECHHHHHHHHTSE
T ss_pred EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH----hcccCHHHHHHHccce
Confidence 456899999999999999875 4899999988543 5778888888887653
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=3e-07 Score=76.34 Aligned_cols=34 Identities=24% Similarity=0.599 Sum_probs=29.0
Q ss_pred CCccccCCcchHHhHHHHhcCC---CCCccccccccc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRH---KYCPICDVLVYK 42 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~s---ksCPvCRk~Ihk 42 (937)
..++.|||+||+.||.+|+... ..||.||+.+..
T Consensus 32 ~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 32 PKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred eEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4567899999999999999875 789999988743
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.19 E-value=5.3e-07 Score=72.19 Aligned_cols=33 Identities=21% Similarity=0.527 Sum_probs=28.3
Q ss_pred ccccCCcchHHhHHHHhcCC-CCCcccccccccc
Q psy8409 11 KLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKT 43 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkS 43 (937)
++.|||+||+.||.++|... ..||+||+.+...
T Consensus 23 ~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 23 VNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp ECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred cCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 57999999999999998764 6799999988543
No 29
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.18 E-value=4.6e-07 Score=72.68 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=30.5
Q ss_pred CccccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
.++.|||.||+.||.+|+.....||+||..+...
T Consensus 31 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 31 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred EeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 6789999999999999998888999999988543
No 30
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.13 E-value=2.9e-07 Score=73.76 Aligned_cols=47 Identities=23% Similarity=0.605 Sum_probs=34.9
Q ss_pred ccCCccccCCcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhh
Q psy8409 7 KSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRL 55 (937)
Q Consensus 7 kt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTL 55 (937)
+....+.|||.||+.||.+|+.....||.||..+... ...++.|..+
T Consensus 17 ~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~d~~~ 63 (68)
T 1chc_A 17 NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV--VHTIESDSEF 63 (68)
T ss_dssp SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE--ECCCCSCCCC
T ss_pred CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh--hhccccchHh
Confidence 3336788999999999999998888999999887432 2234455443
No 31
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.12 E-value=1.2e-06 Score=77.28 Aligned_cols=49 Identities=27% Similarity=0.564 Sum_probs=37.9
Q ss_pred ccccCCcchHHhHHHHhcC-CCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 11 KLFFSFPVCKTCIVKYLKR-HKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~-sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
++.|||+||+.||.+++.. ...||.||..+.... -...+..|.+++..+
T Consensus 38 ~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~---~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 38 ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD---LESPVKSFLNILNSL 87 (116)
T ss_dssp ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG---CBCCCHHHHHHHHHC
T ss_pred EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh---ccccHHHHHHHHHHh
Confidence 4689999999999999987 578999999886542 134567777777554
No 32
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=6.8e-07 Score=70.96 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=29.0
Q ss_pred CccccCCcchHHhHHHHhcCCCCCcccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
.++.|||.||+.||.+|+.....||+||..+.
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp EECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred EeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 56899999999999999988889999998773
No 33
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.09 E-value=6.1e-07 Score=74.04 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=26.3
Q ss_pred Cccc-cCCcchHHhHHHHhcCC--CCCccccccc
Q psy8409 10 PKLF-FSFPVCKTCIVKYLKRH--KYCPICDVLV 40 (937)
Q Consensus 10 tTLE-CLHSFCKSCIvKyLE~s--ksCPvCRk~I 40 (937)
.++. |||+||+.||.+|+... ..||+||..+
T Consensus 29 ~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 29 VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 3466 99999999999999864 6899999864
No 34
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=2e-06 Score=69.03 Aligned_cols=33 Identities=18% Similarity=0.483 Sum_probs=27.7
Q ss_pred CccccCCcchHHhHHHHhc-CCCCCccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLK-RHKYCPICDVLVYK 42 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE-~sksCPvCRk~Ihk 42 (937)
.++.|||+||+.||.+++. ....||+||..+..
T Consensus 29 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 29 KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3479999999999999995 45689999988743
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.06 E-value=1.2e-06 Score=72.10 Aligned_cols=33 Identities=27% Similarity=0.630 Sum_probs=29.3
Q ss_pred ccccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 11 KLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
.+.|+|.||+.||.+|+.....||+||..+...
T Consensus 33 ~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 33 QLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp ECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred EeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 468999999999999998888999999988544
No 36
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.7e-06 Score=69.85 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=27.5
Q ss_pred CccccCCcchHHhHHHHhcC---CCCCccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKR---HKYCPICDVLVYK 42 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~---sksCPvCRk~Ihk 42 (937)
.++.|||+||+.||.+++.. ...||+||..+..
T Consensus 34 ~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 34 VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34599999999999999973 4689999998743
No 37
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.06 E-value=1.5e-06 Score=70.02 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=30.2
Q ss_pred CCccccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
...+.|+|.||+.||.+|+.....||+||..+...
T Consensus 30 ~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 30 VRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp EEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34578999999999999999888899999988543
No 38
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.05 E-value=1.1e-06 Score=68.78 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=29.8
Q ss_pred CccccCCcchHHhHHHHhcCCCCCccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
..+.|||.||+.||.+|+.....||.||..+..
T Consensus 24 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 24 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp EEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred EeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 578999999999999999888899999998753
No 39
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.04 E-value=1.1e-06 Score=81.96 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=40.4
Q ss_pred cccccCCccccCCcchHHhHHHHhcCC-CCCccccccccccCC-----CCCCCCchhhHHHHHHh
Q psy8409 4 ILHKSGPKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKP-----LQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 4 LLhkt~tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrP-----L~sLRpDrTLQdIVyKL 62 (937)
+|.+. ..+.|||+||+.||.++|... ..||+||..+..... ...+.+|..++.+|.+|
T Consensus 40 ~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 40 VLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp BCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred hhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 44554 446999999999999999865 489999986532211 11355777777777654
No 40
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=1.9e-06 Score=70.27 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.0
Q ss_pred CccccCCcchHHhHHHHhcCCCCCccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
..+.|+|.||+.||.+|+.....||+||..+..
T Consensus 29 ~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 29 VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 456899999999999999888899999988743
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.97 E-value=4e-06 Score=71.72 Aligned_cols=30 Identities=17% Similarity=0.526 Sum_probs=26.1
Q ss_pred ccCCcchHHhHHHHhcC-CCCCccccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKR-HKYCPICDVLVYK 42 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~-sksCPvCRk~Ihk 42 (937)
.|||+||+.||.++|+. ...||.||+.+..
T Consensus 32 ~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 49999999999999965 4789999998854
No 42
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=2.6e-06 Score=69.42 Aligned_cols=32 Identities=25% Similarity=0.668 Sum_probs=28.4
Q ss_pred ccccCCcchHHhHHHHhcCCCCCccccccccc
Q psy8409 11 KLFFSFPVCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
++.|+|.||+.||.+|+.....||+||..+..
T Consensus 33 ~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 33 ICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp EETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred EcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34899999999999999888899999998754
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=2.1e-06 Score=69.31 Aligned_cols=34 Identities=32% Similarity=0.722 Sum_probs=30.1
Q ss_pred CccccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
.++.|+|.||+.||.+|+.....||+||..+...
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 6788999999999999998888999999988543
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.93 E-value=1.9e-06 Score=66.25 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=29.0
Q ss_pred CCccccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
..++.|+|.||+.||.+|+.....||+||..+
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred eEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 56688999999999999999888999999876
No 45
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.91 E-value=2.5e-06 Score=79.68 Aligned_cols=54 Identities=20% Similarity=0.485 Sum_probs=42.0
Q ss_pred cccccCCccccCCcchHHhHHHHhcCC-CCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 4 ILHKSGPKLFFSFPVCKTCIVKYLKRH-KYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 4 LLhkt~tTLECLHSFCKSCIvKyLE~s-ksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
+|.+. ..+.|||+||+.||.+++... ..||.||..+... .+.+|..+..+|.+|
T Consensus 27 ~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~----~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 27 ALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN----QLFPDNFAKREILSL 81 (170)
T ss_dssp BCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG----GCEECHHHHHHHHTS
T ss_pred hhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh----hhhhhHHHHHHHhhc
Confidence 34444 446899999999999999764 5899999988543 577888888888765
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.91 E-value=3.4e-06 Score=73.77 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=30.2
Q ss_pred CccccCCcchHHhHHHHhcCCCCCccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
.++.|||+||+.||.+|+.....||+||+.+..
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 28 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp EEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred EecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 678999999999999999988999999998854
No 47
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.88 E-value=5.5e-06 Score=72.47 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=27.6
Q ss_pred ccccCCcchHHhHHHHhc-----CCCCCccccccccc
Q psy8409 11 KLFFSFPVCKTCIVKYLK-----RHKYCPICDVLVYK 42 (937)
Q Consensus 11 TLECLHSFCKSCIvKyLE-----~sksCPvCRk~Ihk 42 (937)
++.|+|.||+.||.+|+. ....||+||..+..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 678999999999999994 45789999988754
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.87 E-value=4.1e-06 Score=71.89 Aligned_cols=32 Identities=22% Similarity=0.555 Sum_probs=28.5
Q ss_pred CccccCCcchHHhHHHHhcCCCCCcccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
..+.|+|.||+.||.+|+.....||+||..+.
T Consensus 57 ~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 57 TELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp EEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred EecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 34789999999999999998889999998773
No 49
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.86 E-value=4.6e-06 Score=64.23 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=25.7
Q ss_pred ccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
.|+|.||+.||.+|+.....||+||..+
T Consensus 26 ~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 26 RCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 4999999999999998888999999765
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=3.7e-06 Score=68.97 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=28.6
Q ss_pred CccccCCcchHHhHHHHhcCCCCCcccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
..+.|+|.||+.||.+|+.....||+||..+.
T Consensus 40 ~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 40 RVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp EEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred EEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 45789999999999999988889999998774
No 51
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=7.6e-06 Score=64.94 Aligned_cols=28 Identities=21% Similarity=0.524 Sum_probs=23.7
Q ss_pred CCccccCCcchHHhHHHHhcC---CCCCccc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKR---HKYCPIC 36 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~---sksCPvC 36 (937)
..++.|||+||+.||.++++. ...||+|
T Consensus 33 p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 33 PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345699999999999999983 4689998
No 52
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=1.5e-05 Score=61.65 Aligned_cols=28 Identities=25% Similarity=0.686 Sum_probs=23.4
Q ss_pred CCccccCCcchHHhHHHHhcC---CCCCccc
Q psy8409 9 GPKLFFSFPVCKTCIVKYLKR---HKYCPIC 36 (937)
Q Consensus 9 ~tTLECLHSFCKSCIvKyLE~---sksCPvC 36 (937)
..++.|||+||+.||.+++.. ...||+|
T Consensus 28 p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 28 PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 355789999999999999654 4689998
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.59 E-value=1.8e-05 Score=69.27 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=30.4
Q ss_pred CccccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
..+.|||.||..||.+|++....||+||..+...
T Consensus 93 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 93 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp EEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred EeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 5678999999999999999889999999988543
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=2.8e-05 Score=65.76 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=27.2
Q ss_pred cccCCcchHHhHHHHhcCCCCCcccccccc
Q psy8409 12 LFFSFPVCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 12 LECLHSFCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
..|+|.||+.||.+++.....||+||+.+.
T Consensus 46 ~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 46 GECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp ETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 359999999999999999899999998764
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.49 E-value=2.7e-05 Score=61.67 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=25.5
Q ss_pred cCCccccCCcchHHhHHHHhcCCCCCcccccccc
Q psy8409 8 SGPKLFFSFPVCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 8 t~tTLECLHSFCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
...++.|||+||+.||.+ ....||+||..+.
T Consensus 18 ~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 18 CPKLLPCLHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred CeEEcCCCCcccHHHHcc---CCCCCCcCCcEee
Confidence 346788999999999987 3468999998773
No 56
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.36 E-value=4.7e-05 Score=65.32 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=23.7
Q ss_pred cccCCcchHHhHHHHhcC--------CCCCcc--cccc
Q psy8409 12 LFFSFPVCKTCIVKYLKR--------HKYCPI--CDVL 39 (937)
Q Consensus 12 LECLHSFCKSCIvKyLE~--------sksCPv--CRk~ 39 (937)
..|||.||+.||.+||+. ...||. |+..
T Consensus 24 ~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 24 AQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp TTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 369999999999999973 137999 9976
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.19 E-value=8e-05 Score=61.96 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.4
Q ss_pred CCccccCCc-chHHhHHHHhcCCCCCccccccccc
Q psy8409 9 GPKLFFSFP-VCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 9 ~tTLECLHS-FCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
...+.|||. ||+.|+.++ ..||+||..+..
T Consensus 37 ~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 37 IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 346799999 999999886 789999998753
No 58
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.16 E-value=0.00015 Score=65.36 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=27.9
Q ss_pred CccccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
..+.|+|.||..||.+++.....||+||..+
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 3468999999999999999989999999875
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.11 E-value=0.00011 Score=59.92 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=26.9
Q ss_pred ccCCc-chHHhHHHHhcCCCCCcccccccc
Q psy8409 13 FFSFP-VCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 13 ECLHS-FCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
.|||. ||..|+.+++.....||+||+.+.
T Consensus 26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp TEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 99998 999999999988889999999874
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.10 E-value=0.00013 Score=59.62 Aligned_cols=29 Identities=34% Similarity=0.616 Sum_probs=26.8
Q ss_pred ccCCc-chHHhHHHHhcCCCCCcccccccc
Q psy8409 13 FFSFP-VCKTCIVKYLKRHKYCPICDVLVY 41 (937)
Q Consensus 13 ECLHS-FCKSCIvKyLE~sksCPvCRk~Ih 41 (937)
+|||. ||..|+.+++.....||+||..+.
T Consensus 27 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp TEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 89999 899999999988889999999874
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.00022 Score=59.21 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCccccCCc-chHHhHHHHhcCCCCCccccccccc
Q psy8409 9 GPKLFFSFP-VCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 9 ~tTLECLHS-FCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
...+.|||. ||+.|+.+. ..||.||..+..
T Consensus 38 ~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 38 IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp BCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred EEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 456799999 999999653 689999998854
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.96 E-value=0.00012 Score=62.25 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCccccCCc-chHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHH
Q psy8409 9 GPKLFFSFP-VCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNV 58 (937)
Q Consensus 9 ~tTLECLHS-FCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdI 58 (937)
...+.|||. ||..|+.+++ .||.||..+..... ..+.++..|.+|
T Consensus 31 ~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~-i~~p~~~~~~~~ 76 (79)
T 2yho_A 31 STFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQH-VYLPTHTSLLNL 76 (79)
T ss_dssp EEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEE-CBCTTCCC----
T ss_pred EEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEE-EEeCcchhhhhh
Confidence 456789999 9999998764 89999998865321 124455555543
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.91 E-value=0.00014 Score=59.75 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=27.7
Q ss_pred ccCCcchHHhHHHHhcCCCCCcccccccccc
Q psy8409 13 FFSFPVCKTCIVKYLKRHKYCPICDVLVYKT 43 (937)
Q Consensus 13 ECLHSFCKSCIvKyLE~sksCPvCRk~IhkS 43 (937)
.|||+|||.||.+|+..+..||+++..+...
T Consensus 21 ~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 21 KSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp TTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred CCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 8999999999999998877799999988544
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.67 E-value=0.00028 Score=65.18 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred cccCCcchHHhHHHHhcCCCCCccccccc
Q psy8409 12 LFFSFPVCKTCIVKYLKRHKYCPICDVLV 40 (937)
Q Consensus 12 LECLHSFCKSCIvKyLE~sksCPvCRk~I 40 (937)
+.|+|.||..||.+|+.....||+||..+
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp -----------------------------
T ss_pred CCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 58999999999999999888999999875
No 65
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=96.64 E-value=0.011 Score=53.90 Aligned_cols=84 Identities=10% Similarity=0.152 Sum_probs=66.7
Q ss_pred CCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKK 187 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRR 187 (937)
+.|.|.+|-.... +.+.+.++=..++..+||+++..+|+++|+|.....+=+++++.....+.+|.++...+.+ .
T Consensus 26 ~~IPVive~~~~~----~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd-~ 100 (110)
T 2r2q_A 26 DRVPVIVEKAPKA----RVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHE-E 100 (110)
T ss_dssp TEEEEEEEECTTC----CSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCC-T
T ss_pred CceEEEEEecCCC----CCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCC-C
Confidence 5688888865432 2556777777888999999999999999999988788899999877788888776555444 4
Q ss_pred CCCeEEEEE
Q psy8409 188 KTPMYLGYR 196 (937)
Q Consensus 188 ksPMvL~YR 196 (937)
++.|.+.|.
T Consensus 101 DGfLyi~Ys 109 (110)
T 2r2q_A 101 DYFLYVAYS 109 (110)
T ss_dssp TSCEEEEEE
T ss_pred CCEEEEEEe
Confidence 799999995
No 66
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=96.49 E-value=0.015 Score=53.80 Aligned_cols=87 Identities=9% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKK 187 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRR 187 (937)
+.|.|.+|-.... +.+.+.++=..+++.+||+++..+|+++|+|.....+=+++++.....+.+|.++...+.+ .
T Consensus 27 ~~IPVIve~~~~s----~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd-~ 101 (117)
T 1eo6_A 27 DRVPVIVEKVSGS----QIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKD-E 101 (117)
T ss_dssp TEEEEEEEECTTC----SSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCC-T
T ss_pred CeEEEEEEecCCC----CCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCC-C
Confidence 5788888865432 2456665555699999999999999999999988888899999877778888666544443 4
Q ss_pred CCCeEEEEEeee
Q psy8409 188 KTPMYLGYRILE 199 (937)
Q Consensus 188 ksPMvL~YRIke 199 (937)
++-|.+.|....
T Consensus 102 DGfLyi~Ys~~~ 113 (117)
T 1eo6_A 102 DGFLYVAYSGEN 113 (117)
T ss_dssp TSCEEEEEECCC
T ss_pred CCEEEEEEeCCc
Confidence 799999997654
No 67
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=96.44 E-value=0.018 Score=54.54 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=66.9
Q ss_pred CCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEE-EECCeecCCCCchhhHHhhhccC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVEL-VCNNEQLTQNISVMDVAYIYQWK 186 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEI-LCnGEpL~ddyTLMDfAyIYrWR 186 (937)
+.|.|.+|-..... ..+.+.++=..+++.+||.++..+|+++|.|....-+=+ ++++.....+.+|.++...+.+
T Consensus 34 ~kIPVIvEk~~~s~---~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kd- 109 (130)
T 2zjd_A 34 TKIPVIIERYKGEK---QLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKD- 109 (130)
T ss_dssp TEEEEEEEECTTCC---SSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCC-
T ss_pred CceEEEEEEcCCCC---cCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCC-
Confidence 56888887654321 144566555569999999999999999999998878888 7888766788888776554444
Q ss_pred CCCCeEEEEEeee
Q psy8409 187 KKTPMYLGYRILE 199 (937)
Q Consensus 187 RksPMvL~YRIke 199 (937)
.++.|.+.|.-..
T Consensus 110 eDGfLyv~Ys~e~ 122 (130)
T 2zjd_A 110 EDGFLYMVYASQE 122 (130)
T ss_dssp TTSCEEEEEEEHH
T ss_pred CCCEEEEEEeCCc
Confidence 5799999998654
No 68
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=96.41 E-value=0.01 Score=53.06 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=61.0
Q ss_pred cccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecC-CCCchhhHHhhhccCCCCCeEEEEEee
Q psy8409 125 NKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLT-QNISVMDVAYIYQWKKKTPMYLGYRIL 198 (937)
Q Consensus 125 nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~-ddyTLMDfAyIYrWRRksPMvL~YRIk 198 (937)
+.+.+.++=..+|+..||.++.+||+++|.|..+..+=+++++..++ .+.+|.++...+. .++-|.+.|...
T Consensus 15 ~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLyv~Ys~~ 87 (91)
T 4gdk_A 15 DTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKLVLHYCKS 87 (91)
T ss_dssp SSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEEEEEEESS
T ss_pred CCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEEEEEEeCc
Confidence 35678888899999999999999999999999888899999987665 4889888766554 789999999754
No 69
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=96.24 E-value=0.032 Score=52.12 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccC
Q psy8409 107 DENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWK 186 (937)
Q Consensus 107 DDQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWR 186 (937)
-+.|.|.+|-.... +.+.+.++-..+|..+||+++..+|+++|.|....-+=+++|+.....+.||.++...+ =.
T Consensus 29 P~rIPVIvEr~~~~----~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~-kd 103 (119)
T 3h9d_A 29 PDRLPIICEKVYNS----DIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKY-KD 103 (119)
T ss_dssp TTEEEEEEEECTTS----SCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHH-CC
T ss_pred CCeEEEEEEecCCC----CCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHc-CC
Confidence 35688888865432 35667777778999999999999999999999888899999998666788875543321 12
Q ss_pred CCCCeEEEEEeee
Q psy8409 187 KKTPMYLGYRILE 199 (937)
Q Consensus 187 RksPMvL~YRIke 199 (937)
.++.|.+.|...+
T Consensus 104 ~DGfLyv~Ys~e~ 116 (119)
T 3h9d_A 104 EDGFLYMKYSGEA 116 (119)
T ss_dssp TTSCEEEEEECC-
T ss_pred CCCeEEEEEeccc
Confidence 4799999997643
No 70
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=96.21 E-value=0.031 Score=52.04 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=64.9
Q ss_pred CCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKK 187 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRR 187 (937)
+.|.|.+|-.... +.+.+.++=..+|..+||+++..+|+++|.|....-+=+++++.....+.||.++...+ =..
T Consensus 29 ~riPVIvE~~~~~----~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~-kde 103 (118)
T 3rui_B 29 NRIPVICEKAEKS----DIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEH-KDK 103 (118)
T ss_dssp SEEEEEEEECTTC----CSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHH-CCT
T ss_pred CceEEEEEeCCCC----CCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHc-CCC
Confidence 5688888865432 35567665555999999999999999999999877899999996556777775543321 125
Q ss_pred CCCeEEEEEeee
Q psy8409 188 KTPMYLGYRILE 199 (937)
Q Consensus 188 ksPMvL~YRIke 199 (937)
++.|.+.|....
T Consensus 104 DGfLyv~Ys~~~ 115 (118)
T 3rui_B 104 DGFLYVTYSGEN 115 (118)
T ss_dssp TSCEEEEEEECC
T ss_pred CCeEEEEEeccc
Confidence 789999997643
No 71
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.0016 Score=54.09 Aligned_cols=31 Identities=23% Similarity=0.611 Sum_probs=25.7
Q ss_pred cCCccccCCc-chHHhHHHHhcCCCCCccccccccc
Q psy8409 8 SGPKLFFSFP-VCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 8 t~tTLECLHS-FCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
....+.|||. ||..|+.+. ..||+||..+..
T Consensus 27 ~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 58 (68)
T 2ea5_A 27 NWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQE 58 (68)
T ss_dssp CCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCC
T ss_pred CEEEECCCChhhhHHHHhcC----CCCCCCCcchhc
Confidence 3556899999 999999953 689999998854
No 72
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=95.88 E-value=0.046 Score=51.58 Aligned_cols=87 Identities=7% Similarity=0.117 Sum_probs=65.8
Q ss_pred CCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCC
Q psy8409 108 ENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKK 187 (937)
Q Consensus 108 DQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRR 187 (937)
+.|.|.+|-.... +.+.+.++=..+|..+||+.+..+|+++|.|....-+=+++++.....+.||.++...+ =..
T Consensus 35 ~rIPVIvEr~~~s----~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~-kde 109 (125)
T 3m95_A 35 DRVPVIVEKAPKA----RLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH-HDE 109 (125)
T ss_dssp TEEEEEEEECTTC----SSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHH-CCT
T ss_pred CeEEEEEEecCCC----CCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHc-CCC
Confidence 5688888865432 25567766667999999999999999999999887899999987666777875543321 125
Q ss_pred CCCeEEEEEeee
Q psy8409 188 KTPMYLGYRILE 199 (937)
Q Consensus 188 ksPMvL~YRIke 199 (937)
++.|.+.|...+
T Consensus 110 DGfLY~~Ys~e~ 121 (125)
T 3m95_A 110 DFFLYIAFSDEN 121 (125)
T ss_dssp TSCEEEEEESSS
T ss_pred CCeEEEEecCcc
Confidence 799999997654
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.49 E-value=0.0052 Score=56.65 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=27.9
Q ss_pred CccccCCcchHHhHHHHhcC-CCCCcccccccc
Q psy8409 10 PKLFFSFPVCKTCIVKYLKR-HKYCPICDVLVY 41 (937)
Q Consensus 10 tTLECLHSFCKSCIvKyLE~-sksCPvCRk~Ih 41 (937)
-+++|.|.||..|+..++.. .+.||.|+..+.
T Consensus 16 RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 16 RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred eeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 46899999999999999865 589999998774
No 74
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=94.40 E-value=0.095 Score=47.06 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=50.1
Q ss_pred ccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecC-CCCchhhHHhhhccCCCCCeEEEEEee
Q psy8409 126 KAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLT-QNISVMDVAYIYQWKKKTPMYLGYRIL 198 (937)
Q Consensus 126 lk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~-ddyTLMDfAyIYrWRRksPMvL~YRIk 198 (937)
.+.++++=..+++..||.++-+||+++|+| ..|=+++|+..++ .+.+|-++...+. .++-|.+.|...
T Consensus 19 ~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk--~dg~Lyv~Ys~~ 87 (91)
T 3w1s_C 19 IGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK--TNDELIVSYCAS 87 (91)
T ss_dssp -------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC--BTTEEEEEEEC-
T ss_pred CCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC--CCCEEEEEEeCc
Confidence 557888778899999999999999999999 3588899986555 5888877665544 689999999754
No 75
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=94.39 E-value=0.17 Score=45.63 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=61.3
Q ss_pred CeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECC-eecCCCCchhhHHhhhccCC
Q psy8409 109 NISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNN-EQLTQNISVMDVAYIYQWKK 187 (937)
Q Consensus 109 QISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnG-EpL~ddyTLMDfAyIYrWRR 187 (937)
.|.|.++..+. .+.++++=..+++..||.++.+||+++|.|. .+=+++++ ..-..+.+|.++...++ .
T Consensus 13 KV~V~~~~~~~------~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~k--d 81 (96)
T 1wz3_A 13 KIVVHLRATGG------APILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFG--F 81 (96)
T ss_dssp EEEEEEEECTT------CCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHC--B
T ss_pred eEEEEEEECCC------CCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhC--C
Confidence 46666665432 4578888889999999999999999999998 57778888 44456888877655544 3
Q ss_pred CCCeEEEEEeee
Q psy8409 188 KTPMYLGYRILE 199 (937)
Q Consensus 188 ksPMvL~YRIke 199 (937)
++-|.+.|.-.+
T Consensus 82 DGfLyi~Ys~~~ 93 (96)
T 1wz3_A 82 DGKLVVNYACSM 93 (96)
T ss_dssp TTBEEEEEESCS
T ss_pred CCEEEEEEeCCc
Confidence 899999997543
No 76
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=94.23 E-value=0.12 Score=42.47 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=50.5
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
-.|.++...||..||+.|..+.+++.. +.-++|+|..|.++.||.++ ..+...-+.|..|...
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~-~qrL~~~g~~L~d~~tL~~~----~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY----NIHNHSALYLLLKLRG 78 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGG-GEEEEETBEECCTTCBTTTT----TCCTTCEEEEEECCC-
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHH-HEEEEECCeECCCCCCHHHC----CCCCCCEEEEEEeccC
Confidence 457889999999999999999999864 56788899999999999653 3555667777776654
No 77
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=94.05 E-value=0.14 Score=43.28 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=52.2
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
-.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ ......-+.|..|....
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~-~qrL~~~G~~L~d~~tL~~~----~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLRGY 77 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTGGG----TCCTTCEEEEEECCCC-
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChh-HEEEEECCEECCCCCcHHHc----CCCCCCEEEEEEEcCCC
Confidence 357888999999999999999999864 56788999999999999653 35566778888887765
No 78
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=93.71 E-value=0.21 Score=39.66 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=48.3
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-.+.++...||..||+.|..+.+++. .+.-++|+|..|.++.||.++ ......-+.|..|.
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDY----NIQRESTLHLVLRL 73 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTCBTGGG----TCCTTCEEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCH-HHeEEEECCeECCCCCcHHHc----CCCCCCEEEEEEeC
Confidence 35788899999999999999999985 467788899999999999653 34445566666654
No 79
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=93.48 E-value=0.25 Score=39.24 Aligned_cols=60 Identities=10% Similarity=0.140 Sum_probs=48.0
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
.+.++...||..||+.|..+.+++. .+.-++|+|..|.++.||.++ ......-+.|..|.
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPP-QQQRLIYSGKQMNDEKTAADY----KILGGSVLHLVLAL 73 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBGGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCChHHHHHHHHHHHHCcCh-HHEEEEECCEECCCCCcHHHc----CCCCCCEEEEEEeC
Confidence 5788899999999999999999985 467788999999999999653 34445566666654
No 80
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=93.40 E-value=0.17 Score=41.37 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=49.6
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
-.|.++...||..||+.|..+.+++.. +..++|+|..|.++.||.++ ......-+.|..|...
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~-~qrL~~~g~~L~d~~tL~~~----~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY----NIQKWSTLFLLLRLRG 78 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTSBTGGG----TCCTTCEEEEECCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChH-HEEEEECCEECCCCCCHHHc----CCCCCCEEEEEEECcC
Confidence 457899999999999999999999864 45678899999999999653 3445566777666543
No 81
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=93.04 E-value=0.24 Score=44.74 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=47.8
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEE
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGY 195 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~Y 195 (937)
--+.|.+.-||..||+-|+.|.+++...+ -+.++|..|.++.||.|+ .=....-|.|+|
T Consensus 34 ~~v~v~p~DTI~~LK~~I~~k~Gip~~qQ-rLif~Gk~LkD~~TL~dY----~I~dgstLhL~~ 92 (93)
T 3plu_A 34 VRVKCLGEDSVGDFKKVLSLQIGTQPNKI-VLQKGGSVLKDHISLEDY----EVHDQTNLELYY 92 (93)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCCHHHE-EEEeCCEEccCcCCHHHc----CCCCCCEEEEEe
Confidence 44889999999999999999999997654 455599999999999663 234456799988
No 82
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=93.02 E-value=0.18 Score=40.55 Aligned_cols=47 Identities=9% Similarity=0.097 Sum_probs=40.7
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
-.+.++...||..||+.|..+.+++. .+.-++|+|..|.++.||.++
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~-~~qrL~~~gk~L~d~~tL~~~ 62 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPV-ANQRLIYSGKILKDDQTVESY 62 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTGGG
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCH-HHEEEEECCeEcCCCCCHHHc
Confidence 35789999999999999999999985 467778999999999999663
No 83
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.97 E-value=0.033 Score=48.01 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=26.4
Q ss_pred ccccC-----CcchHHhHHHHhcCC--CCCcccccccc
Q psy8409 11 KLFFS-----FPVCKTCIVKYLKRH--KYCPICDVLVY 41 (937)
Q Consensus 11 TLECL-----HSFCKSCIvKyLE~s--ksCPvCRk~Ih 41 (937)
++.|. |.|.+.||.+|+... ..||+|+..+.
T Consensus 32 ~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 32 ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 56785 999999999999864 58999998874
No 84
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=92.84 E-value=0.19 Score=42.14 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=47.9
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
-.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ .. ...-+.|..|...
T Consensus 18 ~~~~v~~~~tV~~lK~~i~~~~gip~~-~qrLi~~Gk~L~d~~tL~~~----~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 18 RTFIVGAQMNVKEFKEHIAASVSIPSE-KQRLIYQGRVLQDDKKLQEY----NV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGG-GEEEEETTEECCTTSBGGGG----TC-TTEEEEEEECCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHH-HEEEEECCeECCCCCCHHHc----CC-CCcEEEEEecCCC
Confidence 457899999999999999999999864 45778899999999999663 23 3455666665433
No 85
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=92.68 E-value=0.21 Score=41.74 Aligned_cols=46 Identities=11% Similarity=0.219 Sum_probs=40.2
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
-.|.+....||..||+.|..+.+++... .-++|+|..|.++.||.+
T Consensus 30 ~~~~v~~~~tV~~lK~~i~~~~gip~~~-qrLi~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 30 RTFIVGAQMNVKEFKEHIAASVSIPSEK-QRLIYQGRVLQDDKKLQE 75 (88)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGG-EEEEETTEECCTTSBGGG
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHH-EEEEECCEECCCCCcHHH
Confidence 3578999999999999999999998754 477889999999999965
No 86
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.66 E-value=0.28 Score=39.81 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=45.9
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEE
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYR 196 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YR 196 (937)
.+.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ ..+...-+.|..|
T Consensus 21 ~~~v~~~~tV~~LK~~i~~~~~i~~~-~qrL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 21 SLQVPEDELVSTLKQLVSEKLNVPVR-QQRLLFKGKALADGKRLSDY----SIGPNSKLNLVVK 79 (81)
T ss_dssp EEEECSSCBHHHHHHHHHHHTCCCTT-TCEEEETTEECCTTSBGGGG----TCCSSBCCEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHH-HEEEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 47899999999999999999999864 56678899999999999663 2334445555544
No 87
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=92.44 E-value=0.48 Score=38.74 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=48.1
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ .-....-+.|..|.
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~-~qrL~~~G~~L~d~~tL~~~----~i~~~~~l~l~~rl 77 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDD-LFWLTFEGKPLEDQLPLGEY----GLKPLSTVFMNLRL 77 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGG-GEEEEETTEECCTTSBGGGG----TCCTTCEEEEEECC
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHH-HEEEEECCEECCCCCcHHHC----CCCCCCEEEEEEec
Confidence 347899999999999999999999864 45788899999999999663 23444566666554
No 88
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=92.35 E-value=0.23 Score=41.06 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=47.8
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-.|.+....||..||..|..+.+++.. +.-++|+|..|.++.||.++ ......-+.|..|.
T Consensus 25 ~~~~v~~~~tV~~lK~~i~~~~gip~~-~qrL~~~G~~L~d~~tL~~~----~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 25 IEIDIEPTDKVERIKERVEEKEGIPPQ-QQRLIYSGKQMNDEKTAADY----KILGGSVLHLVLRL 85 (88)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG-GCCEEETTEECCTTSBGGGG----TCCTTCEEEECCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcCHH-HEEEEECCeECCCCCcHHHc----CCCCCCEEEEEEeC
Confidence 357899999999999999999999854 45778899999999999663 34445556655543
No 89
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=92.22 E-value=0.34 Score=41.08 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=46.7
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEE
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYR 196 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YR 196 (937)
-.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ ..+...-+.|.-|
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~qrL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 89 (91)
T 3v6c_B 30 ITLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 89 (91)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTCBTGGG----TCCTTCEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChh-hEEEEECCeECCCcCcHHHC----CCCCCCEEEEEEe
Confidence 457899999999999999999999864 45778899999999999653 3444455555443
No 90
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.26 Score=42.66 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=47.6
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ ..+...-+.|..|.
T Consensus 35 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~~----~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 35 ITLEVESSDTIDNVKSKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 95 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTCBSGGG----TCCTTEEEEEECBC
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChh-HEEEEECCEECCCCCcHHHC----CCCCCCEEEEEEec
Confidence 457899999999999999999999864 44777899999999999653 34444556665544
No 91
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=91.96 E-value=0.34 Score=41.15 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=50.5
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
-.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ ......-+.|..|....
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~~----~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKEGIPPQ-QQRLIYSGKQMNDEKTAADY----KILGGSVLHLVLALRGG 76 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTSBTTTT----TCCTTCEEEEECBCC--
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChh-HEEEEECCeECCCCCcHHHc----CCCCCCEEEEEEECCCC
Confidence 357899999999999999999999864 45778899999999999653 35556677777776654
No 92
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.91 E-value=0.36 Score=40.04 Aligned_cols=63 Identities=10% Similarity=0.034 Sum_probs=48.4
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
-.+.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ .-....-+.|..|...
T Consensus 20 ~~~~v~~~~tV~~lK~~i~~~~gi~~~-~qrL~~~Gk~L~d~~tL~~~----~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 20 YAYAINPNSFILGLKQQIEDQQGLPKK-QQQLEFQGQVLQDWLGLGIY----GIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEECSSSBHHHHHHHHHHHTCCCTT-TEEEEETTEECCSSSBHHHH----TCCTTEEEEEEECSCC
T ss_pred EEEEeCCCChHHHHHHHHHHHhCCChH-HEEEEECCEEccCCCCHHHC----CCCCCCEEEEEEeccC
Confidence 357888999999999999999999864 56678899999999999663 2233445666666543
No 93
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=91.01 E-value=0.38 Score=39.31 Aligned_cols=61 Identities=5% Similarity=0.102 Sum_probs=47.9
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-.+.+....||..||+.++.+.+++.. +.-++++|..|.++.||.|+ .-....-+.|..|.
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~-~qrL~~~G~~L~d~~tl~~~----~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMN-SLRFLFEGQRIADNHTPKEL----GMEEEDVIEVYQEQ 76 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGG-GEEEEETTEECCTTCCHHHH----TCCTTEEEEEEECC
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcc-cEEEEECCEEeCCCCCHHHc----CCCCCCEEEEEEec
Confidence 468899999999999999999999864 67788899999999999663 22333456665543
No 94
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.98 E-value=0.54 Score=41.17 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=49.2
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
.|.+....||..||+.|..+.+++. .+..++|+|..|.++.||.++ .+ +...-|.|..|....
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~-gi---~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHP-DQLVLIFAGKILKDPDSLAQC-GV---RDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCT-TTEEEEETTEECCTTSCHHHH-TC---CTTEEEEEEECCCCC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHc-CC---CCCCEEEEEEcCCCC
Confidence 5889999999999999999999985 456778899999999999764 22 233456676665554
No 95
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=90.94 E-value=0.58 Score=41.67 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=49.7
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRIL 198 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIk 198 (937)
-.|++....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ ..+...-+.|..|..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~~~----gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLR 109 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTTTT----TCCTTCEEEEEECCC
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCChH-HEEEEECCEECCCCCcHHHC----CCCCCCEEEEEEecC
Confidence 468999999999999999999999864 56778899999999999653 355556677766643
No 96
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=90.70 E-value=0.57 Score=43.75 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=50.5
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhh----ccCCCCCeEEEEE
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIY----QWKKKTPMYLGYR 196 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIY----rWRRksPMvL~YR 196 (937)
-+|.|....||..||.-|..+.+++...+. ++|+|..|.++.||.|+ .+. +|....-+.|.+|
T Consensus 14 i~lev~~sdTV~~lK~kI~~~egIP~~qQr-Li~~Gk~LeD~~TLsdy-~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 14 IFTDAKESSTVFELKRIVEGILKRPPEEQR-LYKDDQLLDDGKTLGEC-GFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBHHHH-TCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEeCCcChHHHHHHHHHHHhCCCHHHeE-EEECCeECCCCCCHHHc-CcccccccCCCCCEEEEEec
Confidence 578999999999999999999999976554 45899999999999774 343 3445566778777
No 97
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=90.44 E-value=0.55 Score=39.19 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=48.6
Q ss_pred eE-EecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 133 YL-RCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 133 YL-RCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
.| .+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ .+ ....-+.|.+|....
T Consensus 22 ~l~~v~~~~tV~~lK~~i~~~~gip~~-~qrL~~~gk~L~d~~tL~~~-~i---~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 22 TIEDVSRKATIEELRERVWALFDVRPE-CQRLFYRGKQLENGYTLFDY-DV---GLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSCCCTT-TEEEEETTEECCSSSBHHHH-TC---CTTCEEEEEECCCCS
T ss_pred EEEecCCCCCHHHHHHHHHHHHCcChh-hEEEEECCeECCCCCCHHHC-CC---CCCCEEEEEEeCCCC
Confidence 46 588999999999999999999864 56677899999999999764 22 334567777766543
No 98
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=90.43 E-value=0.47 Score=40.73 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=49.4
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
-.+.+....||..||+.|..+.+++. .+.-++|+|..|.++.||.++ .-....-+.|..|...
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi~~-~~qrL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLRG 75 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCG-GGEEEEETTEECCTTSBTGGG----TCCTTCEEEEEECCCC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCh-hhEEEEECCEECCCCCCHHHc----CCCCCCEEEEEEeCCC
Confidence 35788899999999999999999986 467788899999999999663 2344556777766553
No 99
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=90.27 E-value=0.89 Score=36.91 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=45.7
Q ss_pred eEE-ecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEE
Q psy8409 133 YLR-CKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYR 196 (937)
Q Consensus 133 YLR-CSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YR 196 (937)
.|. +....||..||+-|..+.+++.. +.-++|+|..|.++.||.++ .-....-+.|..|
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~-~qrL~~~g~~L~d~~tL~~~----~i~~g~~i~l~~r 76 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPG-LQRLFYRGKQMEDGHTLFDY----EVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTCBTTTT----TCCTTCEEEEEEC
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChh-hEEEEECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 477 88999999999999999999864 56677899999999999653 2334455666554
No 100
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.26 E-value=0.31 Score=41.57 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=39.8
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~-~qrL~~~Gk~L~D~~tL~~~ 75 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNAD-RLVLIFTGKILRDQDILSQR 75 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTT-TBCCEETTEECCTTSCHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHH-HEEEEECCEECCCcCCHHHC
Confidence 57889999999999999999999864 45667889999999999763
No 101
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=89.87 E-value=0.44 Score=40.44 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=46.8
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
-.+.++...||..||+-|..+.+++. .+.-++|+|..|.++.||.++ .-....-+.|..|...
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~-~~qrL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLRG 84 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCG-GGCEEEETTEECCTTSBSGGG----TCCTTCEEEEEC----
T ss_pred EEEEECCCChHHHHHHHHHHHHCcCh-hhEEEEECCEECCCCCcHHHc----CCCCCCEEEEEEeCCC
Confidence 45788999999999999999999986 456778899999999999663 2234455666666543
No 102
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=89.69 E-value=0.5 Score=41.44 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=46.6
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
.|.+....||..||+.|..+.+++. .+.-++|+|..|.++.||.++ .-....-+.|..+.
T Consensus 38 ~l~v~~~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~----gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 38 EFAVPENSSVQQFKEEISKRFKSHT-DQLVLIFAGKILKDQDTLSQH----GIHDGLTVHLVIKT 97 (101)
T ss_dssp EEEECSCCCHHHHHHHHHHHHTCCG-GGEEEEETTEEECTTCCTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHc----CCCCCCEEEEEEcC
Confidence 5789999999999999999999985 466778899999999999663 22334455555543
No 103
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=89.59 E-value=0.47 Score=40.36 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=39.8
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.|.++...||..||+.|..+.+++.. +.-++|+|..|.++.||.++
T Consensus 25 ~l~v~~~~TV~~LK~~I~~~~gip~~-~qrL~~~Gk~L~D~~tL~~~ 70 (85)
T 2kd0_A 25 PLSVSPDCTVKDLKSQLQPITNVLPR-GQKLIFKGKVLVETSTLKQS 70 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCCCTT-TCEEEETTEECCTTCBTTTT
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChH-HEEEEECCeECCCcCCHHHC
Confidence 47889999999999999999999864 55677899999999999663
No 104
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.47 E-value=0.2 Score=43.14 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=26.7
Q ss_pred cccCCcchHHhHHHHhcCC--CCCcccccccc
Q psy8409 12 LFFSFPVCKTCIVKYLKRH--KYCPICDVLVY 41 (937)
Q Consensus 12 LECLHSFCKSCIvKyLE~s--ksCPvCRk~Ih 41 (937)
..|+|.|=..||.+||... ..||.|+..+.
T Consensus 32 ~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 32 ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3799999999999999876 78999998774
No 105
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.31 E-value=0.57 Score=41.44 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=47.5
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRIL 198 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIk 198 (937)
-.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ ..+...-+.|..+..
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~~~----~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 14 VPLDLEPSNTILETKTKLAQSISCEES-QIKLIYSGKVLQDSKTVSEC----GLKDGDQVVFMVSQK 75 (106)
T ss_dssp EEECCCTTSBHHHHHHHHHHTTTSCGG-GCEEEETTEECCTTSBTTTT----TCCTTCEEEEECCC-
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChh-hEEEEECCEECCCcCCHHHc----CCCCCCEEEEEEcCC
Confidence 357788899999999999999999864 45778899999999999663 344455566665543
No 106
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=89.30 E-value=0.69 Score=39.44 Aligned_cols=47 Identities=9% Similarity=0.139 Sum_probs=40.2
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCee-cCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQ-LTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEp-L~ddyTLMDf 179 (937)
-.|.++...||..||+-|..+.+++.. +.-++++|.. |.++.||.++
T Consensus 23 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~lL~D~~tL~~y 70 (84)
T 2kk8_A 23 FELEVDYRDTLLVVKQKIERSQHIPVS-KQTLIVDGIVILREDLTVEQC 70 (84)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGG-GEEEEETTEECCCSSSBHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChH-HEEEEECCEEecCCcCCHHHc
Confidence 347899999999999999999999864 5667788999 9999999663
No 107
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.20 E-value=0.6 Score=39.79 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=38.6
Q ss_pred eEEecCCccHHHHHHHHHHHc--CCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKF--NLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKL--dLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.|.|....||..||+.|..+. +++.. +.-++|.|.+|.++.||.++
T Consensus 23 ~v~v~~~~TV~~lK~~I~~~~~~~i~~~-~QrLi~~Gk~L~D~~tL~~~ 70 (93)
T 1wgd_A 23 ELSGDRGWSVGHLKAHLSRVYPERPRPE-DQRLIYSGKLLLDHQCLRDL 70 (93)
T ss_dssp EEECCTTSCHHHHHHHHHHHSTTCCCTT-TCEEEETTEECCSSSCHHHH
T ss_pred EEecCCCCcHHHHHHHHHHHhcCCCChH-HeEEEECCEECcCcCCHHHH
Confidence 356778999999999999999 88764 55677889999999999764
No 108
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=89.20 E-value=0.9 Score=39.39 Aligned_cols=61 Identities=5% Similarity=0.102 Sum_probs=48.9
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-.|.+....||..||+.|+.+.+++.. +.-++|+|..|.++.||.++ .-....-+.|..|.
T Consensus 34 ~~l~v~~~~tv~~lK~~i~~~~gip~~-~qrLif~Gk~L~d~~tl~dy----~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 34 IHFKVKMTTHLKKLKESYCQRQGVPMN-SLRFLFEGQRIADNHTPKEL----GMEEEDVIEVYQEQ 94 (97)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGG-GEEEEETTEECCTTCCHHHH----TCCTTCEEEEEESS
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChh-hEEEEECCeEcCCCCCHHHC----CCCCCCEEEEEEec
Confidence 468899999999999999999999864 67888999999999999663 23344567776654
No 109
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=89.16 E-value=0.64 Score=40.79 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=48.2
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
.|.+....||..||+.|..+.+++. .+.-++|+|..|.++.||.++ .+ +...-+.|..|...
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~~y-gI---~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHP-DQLVLIFAGKILKDPDSLAQC-GV---RDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTSBHHHH-TC---CTTCEEEEEECCCC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCh-hhEEEEECCEECCCcCcHHHC-CC---CCCCEEEEEEcCCC
Confidence 5789999999999999999999985 466778899999999999764 22 33445666655443
No 110
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=89.11 E-value=0.59 Score=40.24 Aligned_cols=46 Identities=4% Similarity=0.066 Sum_probs=39.9
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~y 76 (93)
T 2l7r_A 31 TFEVTGQETVAQIKAHVASLEGIAPE-DQVVLLAGAPLEDEATLGQC 76 (93)
T ss_dssp EEECCSSCBHHHHHHHHHHHHTCCGG-GCEEEETTEECCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChh-HEEEEECCEECCCCCcHHHC
Confidence 57888999999999999999999864 56677889999999999764
No 111
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=89.09 E-value=0.81 Score=37.63 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=38.6
Q ss_pred eEEecCCccHHHHHHHHHHH---cCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNK---FNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkK---LdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.+.+....||..||+.|..+ -+++. .+.-++|+|..|.++.||.++
T Consensus 19 ~~~v~~~~TV~~lK~~i~~~~~~~gip~-~~qrLi~~Gk~L~D~~tL~~~ 67 (85)
T 2wyq_A 19 KIRMEPDETVKVLKEKIEAEKGRDAFPV-AGQKLIYAGKILSDDVPIRDY 67 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCTTTCCG-GGEEEEETTEECCTTSBGGGG
T ss_pred EEEECCCCCHHHHHHHHHhhccccCCCH-HHeEEEECCEECcCCCCHHHc
Confidence 47889999999999999998 45664 466778899999999999663
No 112
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.72 E-value=0.63 Score=42.72 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=46.9
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
.|.+....||..||+.|..+.+++. .+.-++|+|..|.++.||.++ .-+...-+.|..+....
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk~L~D~~tL~dy----gI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQT-DQLVLIFAGKILKDQDTLIQH----GIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCS-SSEEEEETTEEESTTSCGGGT----TCSSSEEEEEEEC----
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCc-ceEEEEECCEEcCCCCCHHHc----CCCCCCEEEEEeccCCC
Confidence 5789999999999999999999985 466778899999999999663 22334456666665543
No 113
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=88.66 E-value=0.64 Score=42.22 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=45.8
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEE
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGY 195 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~Y 195 (937)
|.|....||..||+.|+.|.+++.+ +.-++|.|.+|.++.||.|. .+ ....-+.|.|
T Consensus 43 lev~p~dTV~~lK~~Ia~k~Gip~~-qQrLi~~Gk~L~D~~TL~dy-gI---~~gstlhL~~ 99 (100)
T 1uh6_A 43 VKCNTDDTIGDLKKLIAAQTGTRWN-KIVLKKWYTIFKDHVSLGDY-EI---HDGMNLELYY 99 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCGG-GCEEEETTEECCSSCBHHHH-TC---CTTEEEEEEC
T ss_pred EEeCCCCcHHHHHHHHHHHhCCCHH-HEEEEECCEECCCCCCHHHc-CC---CCCCEEEEEe
Confidence 8899999999999999999999864 55666889999999999663 12 3334588877
No 114
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=88.45 E-value=0.83 Score=39.69 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=47.0
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCC-CchhhHHhhhccCCCCCeEEEEEee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQN-ISVMDVAYIYQWKKKTPMYLGYRIL 198 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~dd-yTLMDfAyIYrWRRksPMvL~YRIk 198 (937)
--|.+....||..||+.|..+.+++.. +.-++++|..|.++ .||.++- + +...-|.|..|..
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~~tL~~yg-I---~~gstl~lv~r~~ 89 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIK-RMQLYYSGIELADDYRNLNEYG-I---TEFSEIVVFLKSI 89 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTT-TEEEEETTEEECCTTSBHHHHT-C---CTTEEEEEEECCC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHH-HEEEEECCEECCCCcccHHHCC-C---CCCCEEEEEEeCC
Confidence 457899999999999999999999864 56667889999999 9996642 2 2334566655544
No 115
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.14 E-value=0.44 Score=42.02 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=39.6
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.|.+....||..||+.|..+.+++...+ -++|+|..|.++.||.++
T Consensus 41 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 41 EVNVAPESTVLQFKEAINKANGIPVANQ-RLIYSGKILKDDQTVESY 86 (101)
T ss_dssp CBCCCTTSBHHHHHHHHHHHHSCCSTTC-CEEETTEECCTTSBTTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCcCcHHHC
Confidence 4678899999999999999999986544 677899999999999663
No 116
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=87.96 E-value=0.68 Score=39.20 Aligned_cols=64 Identities=9% Similarity=0.169 Sum_probs=47.8
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
-.+.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++- -+...-+.|.++....
T Consensus 17 ~~~~v~~~~TV~~LK~~I~~~~gip~~-~qrL~~~Gk~L~D~~tL~~~~----I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 17 STYEVRLTQTVAHLKQQVSGLEGVQDD-LFWLTFEGKPLEDQLPLGEYG----LKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTCSCTT-TEEEESSSSCCCTTSBHHHHH----CSTTCEEEEEEC----
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChh-HEEEEECCEECCCCCcHHHcC----CCCCCEEEEEEEcCCC
Confidence 357899999999999999999999864 456778899999999997642 3445567777765544
No 117
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=87.13 E-value=1.5 Score=38.80 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=47.7
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-.+.+....||..||+.|..+.+++.. +.-++++|..|.++.||.++ .-....-+.|..|.
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~~----gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 108 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCTT-TEEEEETTEECCSSCBTTTT----TCCTTCEEEEEECC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCcc-cEEEEECCEECCCCCcHHHc----CCCCCCEEEEEEeC
Confidence 358899999999999999999999864 56678899999999999653 22344566666654
No 118
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.00 E-value=0.72 Score=40.59 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=45.2
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEE
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYR 196 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YR 196 (937)
.|.+....||..||+.|..+.+++.. +.-++|+|..|.++.||.++ .-+...-+.|..+
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~ 95 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPG-SQRWFFSGRPLTDKMKFEEL----KIPKDYVVQVIVS 95 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCST-TCEEEETTEECCTTSHHHHC----CCSSSCEEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcc-cEEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 48899999999999999999999854 55677899999999999653 2233344555543
No 119
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.84 E-value=1.1 Score=40.58 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=40.5
Q ss_pred ccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 130 GRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 130 ~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
.+--|.+....||..||.-|..+.+++.. +.-++|+|.+|.++.||.|
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~-qQrLI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQEN-YIKIVINKKQLQLGKTLEE 77 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCST-TCEEEETTEECCTTSBHHH
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHH-HeEEEeCCeECCCCCcHHH
Confidence 34457888999999999999999999865 4455588999999999976
No 120
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.20 E-value=1.4 Score=37.81 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=38.7
Q ss_pred eEEecCCccHHHHHHHHHHHc---CCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKF---NLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKL---dLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.+.+....||..||+.|..++ +++. .+.-++|+|..|.++.||.++
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~-~~qrLi~~Gk~L~D~~tL~~y 62 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPV-AGQKLIYAGKILNDDTALKEY 62 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCT-TTEEEEETTEECCTTSBGGGG
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCCh-hhEEEEECCEECCCcCcHHHC
Confidence 578889999999999999995 5664 466778899999999999763
No 121
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=85.79 E-value=2.2 Score=38.12 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=49.0
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEee
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRIL 198 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIk 198 (937)
.-.+.++...||..||+-|..+.+++. .+.-++|+|..|.++.||.++ .-....-+.|.+|..
T Consensus 88 ~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~qrL~~~g~~L~d~~tL~~~----~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 88 TITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCG-GGEEEEETTEECCTTSBTGGG----TCCTTCEEEEEECCC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCcCh-hhEEEEECCEECCCCCCHHHc----CCCCCCEEEEEEecC
Confidence 346788899999999999999999985 456677899999999999663 233445677776643
No 122
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=85.69 E-value=0.97 Score=40.26 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=39.1
Q ss_pred eEEecCCccHHHHHHHHHHHc-CCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKF-NLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKL-dLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
-|.|....||..||..|..++ +.+...+.-++|.|.+|.++.||.++
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y 86 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDI 86 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHH
Confidence 577899999999999999987 45543566677899999999999764
No 123
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.51 E-value=1.4 Score=38.87 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=35.1
Q ss_pred CccHHHHHHHHHHHc--CCCCCceEEEEECCeecCCCCchhhH
Q psy8409 139 SAPVSILHKFLKNKF--NLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 139 rATVsHLKKFLAkKL--dLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
..||..||+.|..+. +++...+.-++|+|..|.++.||.++
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y 86 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY 86 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc
Confidence 499999999999999 99865426778889999999999764
No 124
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=85.07 E-value=1.4 Score=39.20 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=48.8
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
--|.++...||..||..|..+.+++.. +.-++|+|..|.++.||.++ .+ ....-+.|..|....
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~QrL~~~Gk~L~D~~tL~~y-~i---~~g~~i~lv~rl~GG 111 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMPAG-KQKLQYEGIFIKDSNSLAYY-NM---ASGAVIHLALKERSG 111 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCCTT-TEEEEETTEEECTTSBHHHH-TC---CSSCEEEEEECCCSC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCChH-HEEEEECCEECCCCCCHHHC-CC---CCCCEEEEEEEcCCC
Confidence 347899999999999999999999864 55677789999999999663 22 334567777666543
No 125
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.93 E-value=1.1 Score=39.07 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=38.2
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCC-CchhhH
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQN-ISVMDV 179 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~dd-yTLMDf 179 (937)
|.+....||..||+.|..+.+++.. +.-++|+|..|.++ .||.++
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~-~qrL~~~gk~L~D~~~tL~~y 71 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAE-EAQIVYMEQLLTDDHCSLGSY 71 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGG-GBCEEETTEEECCSSSBHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChH-HeEEEECCEECCCCcccHHHC
Confidence 8899999999999999999999864 45667889999877 689653
No 126
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=84.83 E-value=1.3 Score=39.86 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=49.9
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
-.|.+....||..||.-|..+.+++.. +.-++++|..|.++.||.++ .-....-+.|..|....
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~-~qrLi~~Gk~L~D~~tL~~y----gI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 22 ITLEVESSDTIDNVKSKIQDKEGIPPD-QQRLIWAGKQLEDGRTLSDY----NIQRESTLHLVLRLRGG 85 (114)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTCBTTTT----TCCSSCEEEEEECCCSS
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChH-HEEEEECCEECCCCCcHHHC----CCCCCCEEEEEEEcCCC
Confidence 457888999999999999999999864 56678899999999999653 23344567777766543
No 127
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=84.61 E-value=1.4 Score=40.42 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=41.1
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEE-CCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVC-NNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILC-nGEpL~ddyTLMDf 179 (937)
-.|.+....||.+||+-|..+.+++...+--|+| +|..|.++.||.++
T Consensus 15 ~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y 63 (159)
T 3rt3_B 15 FQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 63 (159)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc
Confidence 4578999999999999999999999766655548 79999999999764
No 128
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=84.31 E-value=1.6 Score=38.99 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=40.1
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.+.++...||..||+.|..+.+++.. +..++++|..|.++.||.++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~-~q~L~~~g~~L~d~~tL~~~ 59 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGG-GEEEEETTEECCTTSBTGGG
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChH-HeEEEECCeECcCcccHHHh
Confidence 57888999999999999999999864 56778889999999999664
No 129
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=83.97 E-value=1.7 Score=41.57 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=50.6
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
-.|.+....||..||+-|..+.+++... .-++++|..|.++.||.++ .-+...-+.|..|....
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~-QrLi~~Gk~L~D~~tL~~y----~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLRGG 76 (169)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCTTT-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEECCCC-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCHHH-EEEEECCccccCcCcHHHc----CCCCCCEEEEEEEeccc
Confidence 3578999999999999999999998754 4677899999999999663 22445678888777665
No 130
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=83.53 E-value=1.7 Score=39.84 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=40.5
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
=-|.+.+..||.+||.-|..+++++...+= ++++|..+.++.||.+
T Consensus 39 i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 39 IWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 457788999999999999999999976664 8899999999999965
No 131
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.12 E-value=2 Score=36.39 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=37.1
Q ss_pred eEEecCC-----ccHHHHHHHHHHHcCCCCCceEEEEECCeecCC-CCchhhH
Q psy8409 133 YLRCKAS-----APVSILHKFLKNKFNLSNKHCVELVCNNEQLTQ-NISVMDV 179 (937)
Q Consensus 133 YLRCSAr-----ATVsHLKKFLAkKLdLpse~EVEILCnGEpL~d-dyTLMDf 179 (937)
-|.++.. .||..||+.|..+.+++.. +.-|+|+|..|.+ +.||.++
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~-~qrL~~~Gk~L~D~~~~L~~~ 71 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQS-FQKLIFKGKSLKEMETPLSAL 71 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTT-TCEEEETTEEECCSSSBHHHH
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHH-HEEEEECCeecCCCcccHHHC
Confidence 3677774 9999999999999999864 4566788999987 6688663
No 132
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.79 E-value=1.9 Score=36.78 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=37.3
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCC-CchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQN-ISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~dd-yTLMDf 179 (937)
-.|.+....||..||+.|..+. ..+..++|+|..|.++ .||.++
T Consensus 20 ~~~~v~~~~TV~~LK~~i~~~~----~~~qrLi~~Gk~L~D~~~tL~~y 64 (95)
T 1wia_A 20 ELAVARPEDTVGTLKSKYFPGQ----ESQMKLIYQGRLLQDPARTLSSL 64 (95)
T ss_dssp EEEEECSSSBHHHHHHHHSSST----TTTCEEEETTEECCCSSCBTTTT
T ss_pred EEEEECCCCcHHHHHHHHHhhC----cCcEEEEECCEEccCCcCCHHHc
Confidence 4578999999999999999887 4567778899999999 999763
No 133
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.60 E-value=1.7 Score=40.98 Aligned_cols=45 Identities=9% Similarity=0.240 Sum_probs=38.8
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
=+-+...+||..||..|+.+++++.+ ++.|.|+|.+|.++-||.+
T Consensus 30 tv~v~~d~TV~dLKe~ls~~~~iP~e-~qrLIy~GKiLKD~eTL~~ 74 (118)
T 2daf_A 30 VIPFKVDTILKYLKDHFSHLLGIPHS-VLQIRYSGKILKNNETLVQ 74 (118)
T ss_dssp EEEECSSSCSHHHHHHHHHHHTCCTT-TEEEEETTEEECSSCCHHH
T ss_pred EEEeCCCCcHHHHHHHHHhhhCCChH-HEEEEECCeEcCCcchHHH
Confidence 34477899999999999999999864 5668888999999999965
No 134
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=83.12 E-value=0.26 Score=39.80 Aligned_cols=60 Identities=7% Similarity=0.199 Sum_probs=44.8
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
.+.+....||..||+.|..+.+++. .+.-++|+|..|.++.||.++ .-....-+.|..|.
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~-~~qrL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPA-DQLRVIFAGKELPNHLTVQNC----DLEQQSIVHIVQRP 73 (76)
Confidence 4678889999999999999999985 356677889999999999663 12333445555543
No 135
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=82.04 E-value=3.7 Score=37.61 Aligned_cols=64 Identities=9% Similarity=0.166 Sum_probs=49.5
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
.-.+.+....||..||+-|..+.+++.. +.-++|+|..|.++.||.|+ .=....-+.|..|...
T Consensus 93 ~~~~~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~G~~L~d~~tL~~y----~i~~g~~l~l~~rl~G 156 (159)
T 3rt3_B 93 SSTYEVRLTQTVAHLKQQVSGLEGVQDD-LFWLTFEGKPLEDQLPLGEY----GLKPLSTVFMNLRLRG 156 (159)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTCCGG-GEEEEETTEECCTTSBGGGG----TCCTTCEEEEEECCC-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCHH-HEEEEECCeecCCCCCHHHc----CCCCCCEEEEEEecCC
Confidence 3457899999999999999999999864 56677899999999999653 2234556777776544
No 136
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=81.74 E-value=2.2 Score=39.93 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=40.6
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
-.|++....||..||+.|..+.+++... .-++++|..|.++.||.++
T Consensus 33 ~~l~v~~~~tV~~lK~~I~~~~gip~~~-QrL~~~g~~L~d~~tL~~~ 79 (172)
T 3u30_A 33 ITLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY 79 (172)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTCBTGGG
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHH-EEEEECCccccccCCHhHc
Confidence 4588999999999999999999998654 4667889999999999764
No 137
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=80.98 E-value=1.6 Score=38.65 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=46.5
Q ss_pred EEecC-CccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 134 LRCKA-SAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 134 LRCSA-rATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
|.+.. ..||..||..|..+.+++.. +.-++|+|..|.++.||.++ . =....-+.|..|...
T Consensus 45 l~v~~l~~TV~~LK~~I~~~~gip~~-~QrL~~~Gk~L~D~~tL~~y-~---I~~g~~l~l~~r~~G 106 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAGEIQIPAN-KQKLSGKAGFLKDNMSLAHY-N---VGAGEILTLSLRERS 106 (111)
T ss_dssp EEESCSSSBHHHHHHHHHHHTTCCTT-TSEEECSSSBCCTTSBTTTT-T---CSSSCEEEEECSSCC
T ss_pred EEecCCCCcHHHHHHHHHHHHCCCHH-HeEEEECCEECCCCCcHHHC-C---CCCCCEEEEEEEcCC
Confidence 78997 99999999999999999864 45667789999999999653 1 233445666655543
No 138
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=79.17 E-value=2.3 Score=37.88 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=36.7
Q ss_pred EEecCCccHHHHHHHH-HHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 134 LRCKASAPVSILHKFL-KNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 134 LRCSArATVsHLKKFL-AkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
|.|+...||..||..| ..+-+++.. +.-++|+|..|.++.||.+
T Consensus 36 v~v~~~~TV~~lK~~I~~~~~gip~~-~QrLi~~Gk~L~D~~tL~d 80 (98)
T 4a20_A 36 HDFSPSDTILQIKQHLISEEKASHIS-EIKLLLKGKVLHDNLFLSD 80 (98)
T ss_dssp EEECTTCBHHHHHHHHHHTTSCSCGG-GEEEEETTEEECTTCBGGG
T ss_pred EecCCCChHHHHHHHHHHHhcCCChh-hEEEEECCEECcCcCCHHH
Confidence 3677999999999999 766687754 5567789999999999976
No 139
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=78.50 E-value=2.7 Score=36.66 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=36.1
Q ss_pred ecCCccHHHHHHHH-HHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 136 CKASAPVSILHKFL-KNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 136 CSArATVsHLKKFL-AkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
++...||..||..| ..+-+++.. +.-++|.|..|.++.||.++
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~-~QrLi~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHIS-EIKLLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSST-TEEEEETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChH-HEEEEECCEECcCcCCHHHc
Confidence 45899999999999 888888864 45667889999999999763
No 140
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=77.57 E-value=3.3 Score=35.38 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=38.1
Q ss_pred E-EecCCccHHHHHHHHHHHcCCCCCceEEEE---ECCeecCCCCchhhH
Q psy8409 134 L-RCKASAPVSILHKFLKNKFNLSNKHCVELV---CNNEQLTQNISVMDV 179 (937)
Q Consensus 134 L-RCSArATVsHLKKFLAkKLdLpse~EVEIL---CnGEpL~ddyTLMDf 179 (937)
| .++...||..||.-|..+.+++... .-++ |+|.+|.++.+|.++
T Consensus 21 i~~v~~~~TV~~lK~~I~~~~gip~~~-QkLi~~k~~Gk~L~D~~~L~~~ 69 (90)
T 1v5t_A 21 VTTLSEDDTVLDLKQFLKTLTGVLPER-QKLLGLKVKGKPAENDVKLGAL 69 (90)
T ss_dssp ECSCCSSSBHHHHHHHHHHHTCCCTTT-CEEESCEETTEECCTTSBHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHH-eEEEeeccCCcCcCCCCCHHHc
Confidence 5 7788999999999999999998654 4566 899999999999663
No 141
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=76.95 E-value=3.4 Score=38.74 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=40.7
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
-||.+....||..||+-|..+.+++...+ -++++|..|.++.||.|.
T Consensus 14 I~ldve~sdTV~~lK~kI~~~~giPp~qQ-rLI~~Gk~LeD~kTL~dy 60 (118)
T 4ajy_B 14 IFTDAKESSTVFELKRIVEGILKRPPDEQ-RLYKDDQLLDDGKTLGEC 60 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTT
T ss_pred EEEEcCCCChHHHHHHHHHHHHCCCHHHe-EEEeCCeECCCcCCHHHc
Confidence 57788899999999999999999997544 556899999999999773
No 142
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=75.82 E-value=2.9 Score=41.38 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=47.9
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeee
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILE 199 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke 199 (937)
-.|.+....||..||.-|..+.+++.. +.-++++|..|.++.||.++ . =+...-+.|.-|+..
T Consensus 118 ~~l~V~~s~TV~~LK~kI~~~~gIp~~-~QrLi~~Gk~L~D~~tL~dy-g---I~~gstI~LvlrlrG 180 (189)
T 3q3f_A 118 ITLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY-N---IQKESTLHLVLRLRG 180 (189)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG-GCCEEETTEECCTTCBGGGG-T---CCTTCEEEECCCCCC
T ss_pred EEEEeCCCCcHHHHHHHHHhccCCCHH-HEEEEECCEECCCCCCHHHC-C---CCCCCEEEEEEEcCC
Confidence 458899999999999999999999864 45667899999999999764 1 233455666555443
No 143
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=75.04 E-value=0.99 Score=38.78 Aligned_cols=19 Identities=5% Similarity=-0.060 Sum_probs=16.8
Q ss_pred CCCCCCCCCCeeEEEEEcc
Q psy8409 100 SSDIILPDENISITLEYLA 118 (937)
Q Consensus 100 dlkLFC~DDQISLCLEC~s 118 (937)
.+.+||.+++..||..|..
T Consensus 69 ~l~~fC~~~~~~iC~~C~~ 87 (101)
T 2jun_A 69 KVNMYCVTDDQLICALCKL 87 (101)
T ss_dssp CCCEEETTTTEEECHHHHH
T ss_pred cceEECCCCCCccchhcCC
Confidence 5789999999999999864
No 144
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=75.02 E-value=3.4 Score=38.64 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=45.6
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
.-.|++....||..||+-|..+.+++... ..++|+|..|.++.||.|+ . =+...-+.|..|.
T Consensus 108 ~~~l~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~~g~~L~D~~tL~~y-~---i~~g~tl~l~~rl 169 (172)
T 3u30_A 108 TITLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY-N---IQKESTLHLVLRL 169 (172)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGG-CCEEETTEECCTTSBSGGG-T---CCTTCEEEECC--
T ss_pred ceeEEecCCCCHHHHHHHHHHHhCCCcee-EEEEECCccCCCCCcHHHh-C---CCCCCEEEEEEec
Confidence 45678999999999999999999998644 4566789999999999663 2 2333455555443
No 145
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.60 E-value=2.5 Score=36.92 Aligned_cols=43 Identities=7% Similarity=0.117 Sum_probs=37.1
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
|.+....||..||.-|..+.+++... .-|+|.|..|.++ ||.+
T Consensus 22 l~v~~~~TV~~lK~~I~~~tgip~~~-QkLi~~Gk~L~D~-tL~~ 64 (96)
T 1wgg_A 22 VELNTDEPPMVFKAQLFALTGVQPAR-QKVMVKGGTLKDD-DWGN 64 (96)
T ss_dssp EEEESSSCHHHHHHHHHHHTCCCTTT-SCCEETTEECCSS-CCCS
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCcCCCCC-CHHH
Confidence 78999999999999999999999654 4456899999998 9855
No 146
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=72.74 E-value=3.4 Score=35.81 Aligned_cols=45 Identities=4% Similarity=0.048 Sum_probs=38.7
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEEC------CeecCCCCchhh
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCN------NEQLTQNISVMD 178 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCn------GEpL~ddyTLMD 178 (937)
+|.+...||..||.-|..+.|++...+--||++ |..|.++.||.+
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~ 69 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGY 69 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGG
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHH
Confidence 778999999999999999999998777777653 568999999955
No 147
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.53 E-value=4.9 Score=37.08 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=39.3
Q ss_pred ceEEecCCccHHHHHHHHHHHc------CCC-CCceEEEEECCeecCCCCchhh
Q psy8409 132 RYLRCKASAPVSILHKFLKNKF------NLS-NKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKL------dLp-se~EVEILCnGEpL~ddyTLMD 178 (937)
--|.+....||..||..|..+. +++ ...++-++|.|.+|.++.||.+
T Consensus 29 ~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~ 82 (116)
T 1wgh_A 29 KEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 82 (116)
T ss_dssp EEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTT
T ss_pred EEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 4578889999999999999953 443 4568889999999999999966
No 148
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=70.99 E-value=0.85 Score=41.46 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=2.4
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeecccccc
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILETKIKRI 205 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~sikpi 205 (937)
.|.+....||..||.-|..+.+++.. +.-++++|..|.++.||.|+ .-....-+.|..|.....+.+-
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~~~----~I~~gsti~l~~rl~GG~~~~s 81 (128)
T 3u5e_m 14 TLEVESSDTIDNVKSKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRLRGGIIEPS 81 (128)
T ss_dssp --------------------------------------------------------------------CCCHH
T ss_pred EEEeCCCCCHHHHHHHHHHHhCcChH-HEEEEECCEECCCCCchhhh----ccCCCCEEEEEEEcCCCCCChh
Confidence 46788899999999999999999864 45677899999999999763 2344567888888777655443
No 149
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=70.58 E-value=8.8 Score=32.50 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=43.0
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-++++....++..|.+..+.|.+++.. ++-+++.|+.|.++.|+.++
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~-~~rf~fdG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGH-KLSFFFDGTKLSGKELPADL 67 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTC-CCEEEETTEECCSCCCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcc-cEEEEECCEEcCCCCCHHHc
Confidence 3589999999999999999999999864 78999999999999999764
No 150
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.71 E-value=2.9 Score=36.27 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=36.1
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMD 178 (937)
.|.++...||..||..|..+.+++... .-|+|.|..| ++.||.+
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~-QrL~~~Gk~L-dd~tL~~ 73 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAM-QKVMYKGLVP-EDKTLRE 73 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTT-CCCBSSSBCC-SSSBHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-eEEEECCeeC-CcCcHHH
Confidence 478999999999999999999998654 4456788899 4559865
No 151
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=67.02 E-value=1.9 Score=39.87 Aligned_cols=32 Identities=22% Similarity=0.529 Sum_probs=27.0
Q ss_pred cccc-CCcchHHhHHHHhcCCCCCccccccccc
Q psy8409 11 KLFF-SFPVCKTCIVKYLKRHKYCPICDVLVYK 42 (937)
Q Consensus 11 TLEC-LHSFCKSCIvKyLE~sksCPvCRk~Ihk 42 (937)
.+.| -|-+|..|+..-+..+..||.|+..+..
T Consensus 41 LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 41 LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp EEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred eeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 3444 5899999999999999999999998843
No 152
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=66.13 E-value=9 Score=31.67 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=43.0
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-++++....++..|....+.|.+++. .++-+++.|+.|.++.|+.++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~-~~~rf~fdG~~l~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCT-TTCEEEETTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCc-ceEEEEECCEEcCCCCCHHHc
Confidence 468999999999999999999999986 578999999999999999764
No 153
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.05 E-value=6.6 Score=33.81 Aligned_cols=46 Identities=7% Similarity=-0.101 Sum_probs=36.3
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEEC--Cee----cCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCN--NEQ----LTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCn--GEp----L~ddyTLMD 178 (937)
=++++...||..||.-|..+.+++...+--++.+ |.. +.++.||.+
T Consensus 22 ~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~ 73 (95)
T 1v6e_A 22 EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGS 73 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTS
T ss_pred EEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhH
Confidence 3789999999999999999999997666555553 333 578889854
No 154
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=64.86 E-value=4.5 Score=37.72 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=39.8
Q ss_pred cceEEecCCccHHHHHHHHHHH------cCCC-CCceEEEEECCeecCCCCchhh
Q psy8409 131 RRYLRCKASAPVSILHKFLKNK------FNLS-NKHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkK------LdLp-se~EVEILCnGEpL~ddyTLMD 178 (937)
.--|.+....||..||..|... =+++ ...++-++|.|.+|.++.||.+
T Consensus 29 ~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~ 83 (125)
T 2gow_A 29 TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGA 83 (125)
T ss_dssp EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGG
T ss_pred EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHH
Confidence 3457788999999999999994 4554 4568889999999999999966
No 155
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=62.82 E-value=13 Score=32.77 Aligned_cols=67 Identities=7% Similarity=-0.103 Sum_probs=47.8
Q ss_pred CCCCCCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEEC-Ce----ecCCCCchhh
Q psy8409 104 ILPDENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCN-NE----QLTQNISVMD 178 (937)
Q Consensus 104 FC~DDQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCn-GE----pL~ddyTLMD 178 (937)
+..+..|.|.+.+.... ...-=++++...||..||.-|..+.+++...+--||.+ |. .+.++.||.+
T Consensus 10 ~~~~~~v~l~It~s~~~--------~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 10 HGKSDFIKVNVSNSHND--------AVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCCCCEEEEEEEESSCS--------CEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred cCCCCeEEEEEEECCCC--------ceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 45567788877663221 01223688899999999999999999998776666663 43 3589999965
No 156
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=62.69 E-value=3 Score=37.86 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=43.7
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCC--------------ceEEEEECCeecC-CCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNK--------------HCVELVCNNEQLT-QNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse--------------~EVEILCnGEpL~-ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
-|.+...+||..||+-|..+.+++.. .+.-+.|+|+.|. ++.||.|+ -| +...-++|.-|+
T Consensus 21 ~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy-gI---~~g~~l~lv~~l 96 (105)
T 1v2y_A 21 PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY-GI---RNRDEVSFIKKL 96 (105)
T ss_dssp EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH-TC---CSSEEEEEEECS
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc-CC---CCCCEEEEEehh
Confidence 37788899999999999999987642 2456668999986 56999764 22 333445554444
Q ss_pred e
Q psy8409 198 L 198 (937)
Q Consensus 198 k 198 (937)
.
T Consensus 97 r 97 (105)
T 1v2y_A 97 G 97 (105)
T ss_dssp C
T ss_pred c
Confidence 3
No 157
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=62.22 E-value=9 Score=40.63 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=40.4
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
-.|.++...||..||+-|..+.+++.. +.-++++|..|.++.||.++
T Consensus 246 ~~leV~~s~TV~dLK~kI~~~~GIp~~-~QRLi~~Gk~L~D~~TLsdy 292 (307)
T 3ai5_A 246 ITLEVEPSDTIENVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY 292 (307)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG-GCEEEETTEECCTTSBTGGG
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChH-HEEEEeCCeecCCCCCHHHc
Confidence 358899999999999999999999865 45667889999999999664
No 158
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=62.11 E-value=1.6 Score=41.65 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
.|.+....||..||..|..+.+++.. +.-++++|..|.++.||.|+ .+ ....-+.|.-|+...
T Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~-~QrLi~~Gk~L~D~~tL~dy-gI---~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 14 TLEVESSDTIDNVKSKIQDKEGIPPD-QQRLIFAGKQLEDGRTLSDY-NI---QKESTLHLVLRLRGG 76 (152)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHH-HEEEEECCEEccccCcHHHc-CC---CCCCEEEEEeeccCC
Confidence 46788899999999999999999864 45677889999999999764 22 334567777777665
No 159
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=61.87 E-value=11 Score=33.11 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=48.7
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEe
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRI 197 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRI 197 (937)
.-++++....++..|++..+.|.+++. .++-+++.|+.|.++.|+.|+ . .....-+.++.+.
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~-~~~rf~FdG~~l~~~~Tp~dl-~---medgD~Idv~~~~ 80 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQL-E---MEDEDTIDVFQQQ 80 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTT-T---CCTTCEEEEEECC
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCCCCHHHc-C---CCCCCEEEEEEec
Confidence 357899999999999999999999986 578999999999999999764 2 2333445554443
No 160
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=59.28 E-value=15 Score=32.35 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=43.2
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-++++....++..|.+..+.|.+++. .++-+++.|+.|.++.|+.|+
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~-~~~rf~FdG~~l~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCS-TTEEEEETTEECCTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCc-ccEEEEECCEEcCCCCCHHHc
Confidence 468999999999999999999999986 578999999999999999764
No 161
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=58.37 E-value=14 Score=32.76 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=45.6
Q ss_pred CCCeeEEEEEccCCCCcccccccccceEEecCCccHHHHHHHHHHHcCCCCCceEEEEEC--Cee----cCCCCchhh
Q psy8409 107 DENISITLEYLAHSSDDINKAVYGRRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCN--NEQ----LTQNISVMD 178 (937)
Q Consensus 107 DDQISLCLEC~sSredd~nlk~L~KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCn--GEp----L~ddyTLMD 178 (937)
++-|.|.+.+.... ...-=++++...||..||.-|..+.+++...+--||.+ |.. +.++.||.+
T Consensus 12 ~~~v~l~It~s~~~--------~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 12 DDSVHLHITHANLK--------SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCCEEEEEEETTSS--------CCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred CceEEEEEEECCCC--------ceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 44577777663221 11233789999999999999999999998777777765 232 578888855
No 162
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=58.14 E-value=28 Score=32.81 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=38.0
Q ss_pred EEecCCccHHHHHHHHHHHc-----CCCC-CceEEEEECCeecCCCCchhh
Q psy8409 134 LRCKASAPVSILHKFLKNKF-----NLSN-KHCVELVCNNEQLTQNISVMD 178 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKL-----dLps-e~EVEILCnGEpL~ddyTLMD 178 (937)
|.+....||..||..|+... +++. ..+.-++|.|..|.++.||.|
T Consensus 32 l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsd 82 (126)
T 1se9_A 32 KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKD 82 (126)
T ss_dssp EEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGG
T ss_pred eecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHH
Confidence 78999999999999997765 3443 367889999999999999976
No 163
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=57.76 E-value=29 Score=31.73 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=42.8
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
-++++....++..|.+..+.+.+++.. ++-+++.|+.|.++.|+.|+
T Consensus 39 i~fkVk~~t~l~kL~~ay~ek~gi~~~-~~rfiFdG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 39 MFFRIKSRTALKKLIDTYCKKQGISRN-SVRFLFDGTPIDETKTPEEL 85 (110)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCCSS-SCEEESSSCBCCSSSHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcc-cEEEEECCEEcCCCCCHHHc
Confidence 589999999999999999999999864 78999999999999999775
No 164
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=55.03 E-value=18 Score=31.55 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=42.4
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
-++++....++..|....+.+.+++. .++-+++.|+.|.++.|+.++
T Consensus 30 i~~~v~~~t~l~kl~~~y~~~~gi~~-~~~rf~fdG~~l~~~~Tp~dl 76 (93)
T 2d07_B 30 VQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQL 76 (93)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTT
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCc-cceEEEECCEEcCCCCCHHHc
Confidence 58999999999999999999999985 478999999999999999764
No 165
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=53.48 E-value=9.3 Score=41.24 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=38.0
Q ss_pred eEEecCCccHHHHHHHHHHHc---CCCCCceEEEEECCeecCCCCchhhH
Q psy8409 133 YLRCKASAPVSILHKFLKNKF---NLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKL---dLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.|.+....||..||+.|..++ +++. .+.-++|+|.+|.++.||.|+
T Consensus 21 ~leV~~~~TV~~LK~~I~~~~~~~gip~-~~QrLiy~GK~L~D~~tL~dy 69 (368)
T 1oqy_A 21 KIRMEPDETVKVLKEKIEAEKGRDAFPV-AGQKLIYAGKILSDDVPIRDY 69 (368)
T ss_dssp EECCCTTCBHHHHHHHHHHHTCSSSCCS-TEEEEESSSSEECSSSBTTTT
T ss_pred EEEeCCCChHHHHHHHHHHHhCcCCCCh-hheEEEECCeecCCcCCHHHc
Confidence 477888999999999999954 4664 567788899999999999663
No 166
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.76 E-value=20 Score=32.33 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=42.8
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-++++....++..|.+..+.|.+++. .++-+++.|+.|.++.|+.++
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~-~~~rf~FdG~~l~~~~Tp~dl 83 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSM-RQIRFRFDGQPINETDTPAQL 83 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCT-TTSCEESSSSBCCTTSCTTTT
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCc-ceEEEEECCEEcCCCCCHHHc
Confidence 368999999999999999999999986 478899999999999999764
No 167
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=50.71 E-value=25 Score=31.82 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=36.1
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEEC--Ce----ecCCCCchhh
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCN--NE----QLTQNISVMD 178 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCn--GE----pL~ddyTLMD 178 (937)
=++++...||..||.-|..+.+++...+--|+.+ |. .+.++.||.+
T Consensus 21 e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~ 72 (122)
T 1t0y_A 21 EKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKD 72 (122)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTT
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHH
Confidence 3689999999999999999999997666555554 22 3578889854
No 168
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=48.41 E-value=29 Score=31.33 Aligned_cols=48 Identities=21% Similarity=0.088 Sum_probs=44.3
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
=+++++..++|.-|-|--+.+-+++....|-+++.|+-|.++.|+.|+
T Consensus 22 l~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dl 69 (82)
T 3goe_A 22 LRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQST 69 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGS
T ss_pred eEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhh
Confidence 568899999999999999999999987789999999999999999774
No 169
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=48.19 E-value=39 Score=30.78 Aligned_cols=48 Identities=8% Similarity=0.233 Sum_probs=43.0
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-++++....++.-|.+..+.|.+++. .++-+++.|+.|.++.|..++
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~-~~~rF~FdG~rl~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCG-GGEEEEETTEECCTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCc-ccEEEEECCeEcCCCCCHHHc
Confidence 468999999999999999999999985 489999999999999999764
No 170
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=47.51 E-value=11 Score=45.60 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=42.6
Q ss_pred CccccC-CcchHHhHHHHhcCCCCCccccccccccCCCCCCCCchhhHHHHHHhc
Q psy8409 10 PKLFFS-FPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63 (937)
Q Consensus 10 tTLECL-HSFCKSCIvKyLE~sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKLV 63 (937)
.++..| +||-|++|.+|+..+..||.=|..+... .+.||+.|...|....
T Consensus 905 VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~----~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 905 VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE----DVTPNEELRQKILCFK 955 (968)
T ss_dssp EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG----GCEECHHHHHHHHHHH
T ss_pred eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc----cccccHHHHHHHHHHH
Confidence 456777 6999999999998888999999988544 6899999999998773
No 171
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=46.22 E-value=42 Score=31.22 Aligned_cols=47 Identities=6% Similarity=0.176 Sum_probs=42.6
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
-++++....++..|.+..+.+.+++. .++-++++|+.|.++.|..++
T Consensus 53 v~fkIk~tt~L~KLm~aY~er~Gl~~-~~irFlFDG~rI~~~~TP~dL 99 (115)
T 3kyd_D 53 IHFKVKMTTHLKKLKESYCQRQGVPM-NSLRFLFEGQRIADNHTPKEL 99 (115)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCT-TSEEEEETTEECCTTCCTTTT
T ss_pred EEEEEccCChHHHHHHHHHHHhCCCh-hhEEEEECCeECCCCCCHHHc
Confidence 58999999999999999999999974 689999999999999998664
No 172
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.82 E-value=25 Score=31.48 Aligned_cols=46 Identities=7% Similarity=0.151 Sum_probs=36.4
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
|.+....||..||.-|..|.+++...|.-|++.+..|.++.+|.++
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~ 68 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL 68 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHH
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHc
Confidence 7788899999999999999999977665454443348889998664
No 173
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.66 E-value=16 Score=31.53 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=35.5
Q ss_pred E-EecCCccHHHHHHHHHHH-cCCCCCceEEEE-ECCeecCCCCchhh
Q psy8409 134 L-RCKASAPVSILHKFLKNK-FNLSNKHCVELV-CNNEQLTQNISVMD 178 (937)
Q Consensus 134 L-RCSArATVsHLKKFLAkK-LdLpse~EVEIL-CnGEpL~ddyTLMD 178 (937)
| .+....||..||+-|..+ -+++...+--++ +.|.+|.++.||.+
T Consensus 27 l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~ 74 (88)
T 2dzj_A 27 LDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQK 74 (88)
T ss_dssp EEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTT
T ss_pred EeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHH
Confidence 6 899999999999999995 578754443333 45889999999966
No 174
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=40.44 E-value=22 Score=31.63 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=44.3
Q ss_pred ceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCe-----ecCCCCchhhHHhhhccCC--CCCeEEEEE
Q psy8409 132 RYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNE-----QLTQNISVMDVAYIYQWKK--KTPMYLGYR 196 (937)
Q Consensus 132 RYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGE-----pL~ddyTLMDfAyIYrWRR--ksPMvL~YR 196 (937)
--||+|..++...|+.-|+.||.+.. .++.+.|.++ ++..+-.| |.| |++ ++-|.|+.+
T Consensus 16 vairvp~~~~y~~L~~~l~~kL~l~~-~~~~LsYk~~~s~~~vi~~d~dl-~~a----w~~~~n~~LtL~C~ 81 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKLELRL-EHTKLSYRPRDSNELVPLSEDSM-KDA----WGQVKNYCLTLWCE 81 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCG-GGCCEEECCTTCSSCEECCTTTH-HHH----HTTCBTTEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc-ceeEEEeeCCCCCCeeccChHHH-HHH----HHhccCCcEEEEEe
Confidence 46899999999999999999999973 4577777653 35555665 333 887 666888764
No 175
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=38.00 E-value=7.4 Score=38.90 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred eEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhHHhhhccCCCCCeEEEEEeeec
Q psy8409 133 YLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDVAYIYQWKKKTPMYLGYRILET 200 (937)
Q Consensus 133 YLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDfAyIYrWRRksPMvL~YRIke~ 200 (937)
.|.+....||..||..|..+.+++.. +.-++|+|.+|.++.||. ...-|.|..|+...
T Consensus 14 tLeV~~sdTV~~LK~kI~~keGIP~~-qQRLIf~GK~LeD~~TLs---------~~STLhLvlRLrGG 71 (189)
T 2xzm_9 14 IYTLEQGTSVLDLKSQISQDMGFEID-MMTLVNNGFIAPNTELVT---------DDVTYYLSLKLLGG 71 (189)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEECCcChHHHHHHHHHHHhCcChh-HEEEEecCeECCCCCccc---------CCCEEEEEEecCCC
Confidence 46677899999999999999999864 455667899999999984 44568888887765
No 176
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=37.36 E-value=17 Score=32.15 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=34.9
Q ss_pred eEEec-CCccHHHHHHHHHHHcCCCCCceEEEEECC-----------ee---cCCCCchhhH
Q psy8409 133 YLRCK-ASAPVSILHKFLKNKFNLSNKHCVELVCNN-----------EQ---LTQNISVMDV 179 (937)
Q Consensus 133 YLRCS-ArATVsHLKKFLAkKLdLpse~EVEILCnG-----------Ep---L~ddyTLMDf 179 (937)
.|.+. ...||..||.-|..+++++...+--++.+. ++ +.++.||.++
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~ 81 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSL 81 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGT
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHC
Confidence 46788 899999999999999999866554334333 22 5788898653
No 177
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.14 E-value=13 Score=34.68 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=19.8
Q ss_pred ccccCCccccCCcchHHhHHHHhcCCCCCcccccc
Q psy8409 5 LHKSGPKLFFSFPVCKTCIVKYLKRHKYCPICDVL 39 (937)
Q Consensus 5 Lhkt~tTLECLHSFCKSCIvKyLE~sksCPvCRk~ 39 (937)
+=.-....+||+.|+. -+.....||.|+..
T Consensus 64 ~v~p~~C~~CG~~F~~-----~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFKA-----EINIPSRCPKCKSE 93 (105)
T ss_dssp EECCCBBTTTCCBCCC-----CSSCCSSCSSSCCC
T ss_pred EEECcChhhCcCeecc-----cCCCCCCCcCCCCC
Confidence 3344567789999932 23344689999964
No 178
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.67 E-value=52 Score=28.24 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=30.9
Q ss_pred EEecCCccHHHHHHHHHHHcCCCCCceEEEEECC------eec-CCCCchh
Q psy8409 134 LRCKASAPVSILHKFLKNKFNLSNKHCVELVCNN------EQL-TQNISVM 177 (937)
Q Consensus 134 LRCSArATVsHLKKFLAkKLdLpse~EVEILCnG------EpL-~ddyTLM 177 (937)
+|.+..+||..||..|...++++...+--.+..+ ..| .+..||.
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~ 77 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSG
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHh
Confidence 5678999999999999999999965443333321 224 5666663
No 179
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=30.76 E-value=91 Score=28.05 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=42.7
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-|+++....++.-|-+.-+.+.+++.. .|-+++.|+.|.++.|..++
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~-~vrF~FDG~rI~~~~TP~dL 85 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGR-KLSFFFDGTKLSGRELPADL 85 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSS-CCEEEETTEECCSCSCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcc-cEEEEECCEEcCCCCCHHHc
Confidence 3589999999999999999999999854 79999999999999998764
No 180
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=30.29 E-value=21 Score=39.01 Aligned_cols=48 Identities=10% Similarity=0.281 Sum_probs=31.7
Q ss_pred ccccCCcchH--HhHHHHhcC--CCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 11 KLFFSFPVCK--TCIVKYLKR--HKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 11 TLECLHSFCK--SCIvKyLE~--sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
...|-|.-|- .=++..... .-.||+|.+.+. +.+|+.|.-|.+|+..+
T Consensus 265 g~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~----~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 265 SINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA----LENLAISEFVDDILQNC 316 (371)
T ss_dssp ETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC----GGGEEEBHHHHHHHTTS
T ss_pred CCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC----HHHeeEcHHHHHHHHhc
Confidence 3568888443 323333322 257999998764 34899999999998655
No 181
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=30.03 E-value=64 Score=32.47 Aligned_cols=48 Identities=8% Similarity=0.233 Sum_probs=43.6
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-++++....++..|++..+.+.+++. .++-++++|+.|.++.|..++
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi~~-~~~RF~FdG~rI~~~~TP~dL 87 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLYDGIRIQADQTPEDL 87 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSSCG-GGEEEEETTEECCTTCCTTTT
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCCCh-hhEEEEECCEEcCCCCCHHHc
Confidence 478999999999999999999999975 689999999999999998664
No 182
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.82 E-value=16 Score=34.13 Aligned_cols=14 Identities=14% Similarity=0.766 Sum_probs=11.6
Q ss_pred CcchHHhHHHHhcC
Q psy8409 16 FPVCKTCIVKYLKR 29 (937)
Q Consensus 16 HSFCKSCIvKyLE~ 29 (937)
--|||.|+.+|...
T Consensus 41 AGFCRNCLskWy~~ 54 (105)
T 2o35_A 41 AGFCRNCLSNWYRE 54 (105)
T ss_dssp HSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45999999998754
No 183
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.70 E-value=16 Score=34.06 Aligned_cols=14 Identities=29% Similarity=0.868 Sum_probs=11.5
Q ss_pred CcchHHhHHHHhcC
Q psy8409 16 FPVCKTCIVKYLKR 29 (937)
Q Consensus 16 HSFCKSCIvKyLE~ 29 (937)
--|||.|+.+|...
T Consensus 40 AGFCRNCLskWy~~ 53 (104)
T 3fyb_A 40 ADFCRNCLAKWLME 53 (104)
T ss_dssp HSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45999999998753
No 184
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=27.17 E-value=45 Score=28.01 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=32.7
Q ss_pred EE-ecCCccHHHHHHHHHHHcCCCCCceEEEEEC--CeecC---CCCchhh
Q psy8409 134 LR-CKASAPVSILHKFLKNKFNLSNKHCVELVCN--NEQLT---QNISVMD 178 (937)
Q Consensus 134 LR-CSArATVsHLKKFLAkKLdLpse~EVEILCn--GEpL~---ddyTLMD 178 (937)
+. +....||..||.+|..+.+++.. +..|+++ +..|. ++.||.+
T Consensus 14 v~~l~~~~Tv~~Lk~~I~~~~gi~~~-~qrL~~~~p~k~l~l~~~~~tL~~ 63 (86)
T 2kzr_A 14 LQGLSSRTRLRELQGQIAAITGIAPG-SQRILVGYPPECLDLSDRDITLGD 63 (86)
T ss_dssp ECSCCTTCBHHHHHHHHHHHTCCCTT-TCCCEESSCCCCCCCCCSSCBTTT
T ss_pred eeecCCCCCHHHHHHHHHHHhCCCcc-ceEEEeCCCCcccccCCCCCCHHH
Confidence 55 78899999999999999999753 3345555 35553 5778865
No 185
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=25.62 E-value=32 Score=28.05 Aligned_cols=24 Identities=29% Similarity=0.760 Sum_probs=19.7
Q ss_pred cchHHhHHHHhcC--CCCCccccccc
Q psy8409 17 PVCKTCIVKYLKR--HKYCPICDVLV 40 (937)
Q Consensus 17 SFCKSCIvKyLE~--sksCPvCRk~I 40 (937)
-|=++||.+|+.. +..||+|+..+
T Consensus 32 ~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 32 NVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp SCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred hhHHHHHHHHHHhCCCCccCCCCCee
Confidence 5667899999975 47899999766
No 186
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=23.38 E-value=34 Score=37.33 Aligned_cols=47 Identities=15% Similarity=0.325 Sum_probs=30.8
Q ss_pred cccCCcch--HHhHHHHhcC--CCCCccccccccccCCCCCCCCchhhHHHHHHh
Q psy8409 12 LFFSFPVC--KTCIVKYLKR--HKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL 62 (937)
Q Consensus 12 LECLHSFC--KSCIvKyLE~--sksCPvCRk~IhkSrPL~sLRpDrTLQdIVyKL 62 (937)
..|-|.-| ..=.+...+. .-.||+|.+.+. +.+|+.|.-|.+|+..+
T Consensus 232 ~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~----~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 232 VTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA----YESLILDGLFMEILNDC 282 (360)
T ss_dssp TTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC----GGGEEEBHHHHHHHTTC
T ss_pred CCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC----HHHeEEcHHHHHHHHhC
Confidence 45888733 3323333222 247999998764 34899999999998654
No 187
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=20.56 E-value=81 Score=32.42 Aligned_cols=48 Identities=8% Similarity=0.231 Sum_probs=43.4
Q ss_pred cceEEecCCccHHHHHHHHHHHcCCCCCceEEEEECCeecCCCCchhhH
Q psy8409 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELVCNNEQLTQNISVMDV 179 (937)
Q Consensus 131 KRYLRCSArATVsHLKKFLAkKLdLpse~EVEILCnGEpL~ddyTLMDf 179 (937)
.-++++....++..|.+..+.+.+++. .++-++++|+.|.++.|..|+
T Consensus 68 eV~FKIKrtTpL~KLmeAYcERqGL~~-~sIRFLFDGqRI~~ddTPeDL 115 (207)
T 3tix_A 68 EIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLTFLYDGIEIQADQTPEDL 115 (207)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCG-GGSCEEETTEECCSSCCTTTT
T ss_pred EEEEEEccCChHHHHHHHHHHHhCCCc-ccEEEEECCeecCCCCCHHHc
Confidence 478999999999999999999999986 678999999999999998764
Done!