RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8409
(937 letters)
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 38.6 bits (90), Expect = 4e-04
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 18 VCKTCIVKYLKRHKYCPIC 36
C+ CI++YLK+ CPIC
Sbjct: 25 FCRECILRYLKKKSKCPIC 43
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 41.1 bits (96), Expect = 0.003
Identities = 53/305 (17%), Positives = 79/305 (25%), Gaps = 37/305 (12%)
Query: 376 VPKSEMAISSPVPAVTSTNSIPG-------NRALVYPMVQEPRATTHMTFTNPNIKLPSA 428
VP A PAVTS P RA V +PR + P+ P
Sbjct: 2568 VPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDR-GDPRGPAPPSPLPPDTHAPDP 2626
Query: 429 PPPSRLQPIQYQGTGHCSYMPRGSRPR-APSVPRYKTLKTGVQPWNPTVSRSKVSVGTPD 487
PPPS +P RPR P+ R + + + S
Sbjct: 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRR 2686
Query: 488 PLKPQENISKIFKSRNARFMNSPSPPTTLPKLSLQDPPKPRASNSTLTKVDPRTLSPIVP 547
+P A P P P + P P + +P P
Sbjct: 2687 AARPTVGSLTSL----ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742
Query: 548 VSSSTTKVDSPTYIDNSTSPSHLSVDKHNKYARPSQIKEFNPFLHPSIFYPGFLPYPP-- 605
+ + + + P P+ P L P
Sbjct: 2743 AVPAGPATPG-------------GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
Query: 606 ---DNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKMTPSSPRS 662
++ LP+ D +A+ A + P+ LPP + + T P
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP------LPPPTSAQPTAPPPPP 2843
Query: 663 STAQP 667
P
Sbjct: 2844 GPPPP 2848
Score = 39.5 bits (92), Expect = 0.011
Identities = 42/225 (18%), Positives = 59/225 (26%), Gaps = 25/225 (11%)
Query: 362 PRTSAAYETKALPQVPKSEMAISSPV-PAVTSTNSIPGNRALVYPMVQEPRATTHMTFTN 420
P AA A+P P + + P P T+ P A P PR T +
Sbjct: 2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA--PAAGPPRRLTRPAVAS 2790
Query: 421 PNIKLPSAPPPSRLQPIQYQGTGHCSYMPRGSRPRAPS-----------------VPRYK 463
+ S P P + +P + P P P
Sbjct: 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL 2850
Query: 464 TLKTGVQPWNPTVSRSKVSVGTPDPLKPQENISKIFKSRNARFMNSPSP-PTTLPKLSLQ 522
L V P R P P ++ R AR S S LP +
Sbjct: 2851 PLGGSVAPGGDVRRRPPSRSPAAKPAAP----ARPPVRRLARPAVSRSTESFALPPDQPE 2906
Query: 523 DPPKPRASNSTLTKVDPRTLSPIVPVSSSTTKVDSPTYIDNSTSP 567
PP+P+A + P P + P +
Sbjct: 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951
Score = 37.6 bits (87), Expect = 0.040
Identities = 67/391 (17%), Positives = 114/391 (29%), Gaps = 49/391 (12%)
Query: 457 PSVPRYKTLKTGVQPWNPTVSRSKVSVGTPDP------------LKPQENISKIFKSRNA 504
P P Y+ P+ + G PDP + P E + + R
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534
Query: 505 RFMNS--------------PSPPTTLPKLSLQDPPKPR-ASNSTLTKVDPRTLSPIVPVS 549
++ P PP P + P PR A + V R P P
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQ 2594
Query: 550 SST--TKVDSPTYIDNSTSPSHLSVDKH-------NKYARPSQIKEFNPFLHPSIFYPGF 600
S+ VD PS L D H + ++ P P P
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRD 2654
Query: 601 LPYPPDNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKMTPSSP 660
P P + A ++ Q P + P++ +L + PP P+
Sbjct: 2655 DPAPGRVSRPRRARRLGRAAQASSPPQRPR-RRAARPTVGSLTSLADPPPPPPTPEPAPH 2713
Query: 661 RSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTTSNSHN 720
+A P+ P + + ++ P + A + P
Sbjct: 2714 ALVSATPLPP---GPAAARQASPALPAAPAPPAVPAG---------PATPGGPARPARPP 2761
Query: 721 LPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIASSSSTSSS 780
A + P + + T V S S+E P+ + PA ++A +++ +
Sbjct: 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821
Query: 781 KSYSSSRMSPITSLASFPPTVSISSAQPLSL 811
S + P ++ + PP L L
Sbjct: 2822 ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
Score = 37.6 bits (87), Expect = 0.042
Identities = 56/260 (21%), Positives = 73/260 (28%), Gaps = 45/260 (17%)
Query: 302 SATVLPPVTSQTQNSSNLLNLTTQAQSKQQYGLIPVTSETSFVPISVQQQKNVTSFTNTV 361
SAT LPP + + +S L P P
Sbjct: 2717 SATPLPPGPAAARQASPALPAAPAP---------PAVPAGPATPGGPA--------RPAR 2759
Query: 362 PRTSAAYETKALPQVPKSEMAISSPVPAVTS----TNSIPGNRALVYPMVQEPRATTHMT 417
P T+A A P P + PAV S S+P P +
Sbjct: 2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819
Query: 418 FTN--------PNIKLPSAPPPSRLQPIQYQGTGHCSYMPRGS-RPRAPSVPRYKTLKTG 468
P P+APPP P G S P G R R PS
Sbjct: 2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG-SVAPGGDVRRRPPSRSPAAKPAAP 2878
Query: 469 VQPWNPTVSRSKVSVGT-PDPLKPQENISKIFKSRNARFMNSPSPPTTLPKLSLQDPPKP 527
+P ++R VS T L P + R +PP P+ PP+P
Sbjct: 2879 ARPPVRRLARPAVSRSTESFALPPDQ---------PERPPQPQAPPPPQPQPQPPPPPQP 2929
Query: 528 RASNSTLTKVDPRTLSPIVP 547
+ PR P+ P
Sbjct: 2930 QPPPPP----PPRPQPPLAP 2945
Score = 31.4 bits (71), Expect = 3.3
Identities = 42/211 (19%), Positives = 67/211 (31%), Gaps = 24/211 (11%)
Query: 362 PRTSAAYETKALPQVPKSEMAISSPVPAVTSTNSIPGNRALVYPMVQEPRATTHMTFTNP 421
P+ PQ P + + + P ALV V PR + P
Sbjct: 2927 PQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPR--FRVPQPAP 2984
Query: 422 NIKLPSAPPPSRLQPIQYQGTGHCSYMPRGSRPRAPSVPRYKTLKTGVQPWNPTVSRSKV 481
+ + P++ P TGH S R S +L + P VS K
Sbjct: 2985 SREAPASSTPPL--------TGH-------SLSRVSSWA--SSLALHEETDPPPVSL-KQ 3026
Query: 482 SVGTPDPLKPQENISKIFKSRNARFMNSPSPPTTLPKLSLQDPPKPRASNSTLTKVDPRT 541
++ PD + + S + + P P P P + + P +
Sbjct: 3027 TLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAG-ARESPSS 3085
Query: 542 LSPIVPVSSSTTKVDSPTYIDNSTSPSHLSV 572
P+S++ S Y+ ST S L+V
Sbjct: 3086 QFGPPPLSANA--ALSRRYV-RSTGRSALAV 3113
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 35.4 bits (82), Expect = 0.006
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 19 CKTCIVKYLKRHKYCPIC 36
K C+ K+L+ CP+C
Sbjct: 26 HKECLDKWLRSSNTCPLC 43
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 39.4 bits (91), Expect = 0.010
Identities = 42/277 (15%), Positives = 94/277 (33%), Gaps = 8/277 (2%)
Query: 663 STAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTTSNSHNLP 722
+ A P++ +++ ++ + T ++++ ++ A + S+ + + + V P + +
Sbjct: 393 TVANPVADAKTLIITRTATNATTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPTT 452
Query: 723 ASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIAS--------S 774
S+ ++S + S T + SS ++ SPT + +P + +
Sbjct: 453 PSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNAT 512
Query: 775 SSTSSSKSYSSSRMSPITSLASFPPTVSISSAQPLSLVTTTSITTSAPSLTTNTNEERKD 834
S T+ S + + SP + T + S+ TS + S NTN
Sbjct: 513 SPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVT 572
Query: 835 SNKDNTEQKATPVVISSSENTNSSSNSVTDTVSNIKSESLSTVNTPNADKNSVGDIKNTD 894
S T + + S + + + + ++ + G T+
Sbjct: 573 SAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITE 632
Query: 895 VVLDKKEKTCDSKSEPSETPKTNILTNGENNNHLKPQ 931
T S P P T +G N+
Sbjct: 633 ETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRY 669
Score = 35.5 bits (81), Expect = 0.17
Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 12/218 (5%)
Query: 629 PAFHSSLPPSISTLFNHHLPPQSEKKMTPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSS 688
P +++P + S P S T +P + T +SP S + + +++S
Sbjct: 443 PHKTTAVPTTPSLPPASTGPTVSTADPTSGTP-TGTTSSTLPEDTSPTSRTTSATPNATS 501
Query: 689 ELPRSTAANHIYSLSSLPSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVK 748
P T N ++ P++ S T + + P I + + S T P
Sbjct: 502 PTPAVTTPN-----ATSPTTQKTSDTPNATSPTPIVIGV----TTTATSPPTGTTSVPNA 552
Query: 749 SSPSSKEKSPTCVNSIFSPANMIASSSSTSSSKSYSSSRMSPITSLASFPPTVSISSAQP 808
+SP E+SP N+ +P A S TS+ + S TS P+ S S+ +
Sbjct: 553 TSPQVTEESPV--NNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRS 610
Query: 809 LSLVTTTSITTSAPSLTTNTNEERKDSNKDNTEQKATP 846
S TT +T++ P+ N EE +P
Sbjct: 611 NSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSP 648
Score = 34.8 bits (79), Expect = 0.29
Identities = 40/212 (18%), Positives = 75/212 (35%), Gaps = 4/212 (1%)
Query: 656 TPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTT 715
+SP +T+ S P ++ ++S S N + + S+ S T
Sbjct: 524 NATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVT 583
Query: 716 SNSHNL---PASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIA 772
+ H P S + IP +S S + S + +P+ +S + P+
Sbjct: 584 TGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHV 643
Query: 773 SSSSTSSSKSYSSSRMSPITSLAS-FPPTVSISSAQPLSLVTTTSITTSAPSLTTNTNEE 831
S+ S +S P S S +P V ++ P T+ S + +
Sbjct: 644 STLSPGPGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTST 703
Query: 832 RKDSNKDNTEQKATPVVISSSENTNSSSNSVT 863
+N E + ++ S+S +TN + T
Sbjct: 704 GGKANSTTKETSGSTLMASTSPHTNEGAFRTT 735
Score = 30.9 bits (69), Expect = 3.5
Identities = 66/371 (17%), Positives = 121/371 (32%), Gaps = 25/371 (6%)
Query: 471 PWNPTVSRSKVSVGTPDPLKPQENISKIFKSRNARFMNSPSPP-TTLPKLSLQDPPKPRA 529
+ T+ + T P P + + + S +P TT L P R
Sbjct: 433 IFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRT 492
Query: 530 SNSTLTKVDPRTLSPIVPVSSSTTKVDSPTYIDNSTSPSHLSVDKHNKYARPSQIKEFNP 589
+++T P +S TT+ S T S +P + + P+
Sbjct: 493 TSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPI-VIGVTTTATSPPTGTTSVPN 551
Query: 590 FLHPSIFYPGFLPYPPDNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNHHLPP 649
P + P N P++ ++P + + Q + +H P
Sbjct: 552 ATSPQVTEES--PVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPR 609
Query: 650 QSEKKMTPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSI 709
+ TP + + + +P S T +S+ S T S S P +
Sbjct: 610 SNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTT-----SQVSGPGNS 664
Query: 710 SVSPTTSNSH---NLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFS 766
S S H +P + S + V + T + K++ ++KE S +
Sbjct: 665 STSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGS------- 717
Query: 767 PANMIASSSSTSSSKSYSSSRMSPITSLASFPPTVSISSAQPLSLVTTTSITTSAPSLTT 826
+STS + + R +P + PP+ S S +P T+ +TT ++
Sbjct: 718 -----TLMASTSPHTNEGAFRTTPYNATTYLPPSTS-SKLRPRWTFTSPPVTTKQATVPV 771
Query: 827 NTNEERKDSNK 837
+ SN
Sbjct: 772 PPTQHPDHSNL 782
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 38.8 bits (90), Expect = 0.014
Identities = 45/221 (20%), Positives = 73/221 (33%), Gaps = 35/221 (15%)
Query: 362 PRTSAAYETKALPQVPKSEMAISSPVPAVTSTNSIPGNRALVYPMVQEPRATTHMTFTNP 421
P++S+ E + L P++ + P++ N P PR T +T T P
Sbjct: 80 PKSSSEMEGEML--APQATVGRDEATPSIAMEN-TP----------SPPRRTAKITPTTP 126
Query: 422 NIKLPSAPPPSRLQ----PIQYQGTGHCSYMPRGSRPRAPSVPRYKTLKTGVQPWNPTVS 477
+ P + Y+ R R S + V+ +PT +
Sbjct: 127 KNNYSPTAAGTERVKEDTPATPSRALN-HYISTSGRQRVKSYTP--KPRGEVKSSSPTQT 183
Query: 478 RSKVSVGTPDPLKPQENISKIFKSRNARFMNSPSPPTTLPKLSLQDPP--------KPRA 529
R KV TP PL N + FM P P+ +++D +
Sbjct: 184 REKVRKYTPSPLGRMVN-----SYAPSTFMTMPRSHGITPRTTVKDSEITATYKMLETNP 238
Query: 530 SNSTLTKVDPRTLSPIVPVSSSTTKVDSPTYIDNSTSPSHL 570
S T K P L + ++ T + D TSP +
Sbjct: 239 SKRTAGKTTPTPLKGMTD--NTPTFLTREVETDLLTSPRSV 277
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 37.6 bits (87), Expect = 0.025
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 7/142 (4%)
Query: 656 TPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTT 715
+S S + S SSP S S LSSS S+ + + +S PSS T+
Sbjct: 1 RAASVSSGST---SGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS 57
Query: 716 SNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIASSS 775
S+S + + +S+ V SP + SPS+ + + + + S S
Sbjct: 58 SSSSFGLSKQRPSSLSRGRLSSRFV----SPSRGSPSAAASLNGSLATASTSGSSSPSRS 113
Query: 776 STSSSKSYSSSRMSPITSLASF 797
++S SS + S +
Sbjct: 114 RRTTSSDLSSGNGPSVLSFMAD 135
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 37.4 bits (86), Expect = 0.041
Identities = 86/423 (20%), Positives = 121/423 (28%), Gaps = 66/423 (15%)
Query: 347 SVQQQKNVTSFTNTVPRTSAAYETKALPQVPKSEMAISSPVPAVTSTNSIPGNRALVYPM 406
S QQQ ++ A + P S A+ + + + + +
Sbjct: 167 SAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSL 226
Query: 407 VQEPRATTHMTFTNPNIKLPSAPPPSRLQPIQYQGTGHCSYMPRGSRPRAPSVPRYKTLK 466
+ P +LPS PP LQP P R P +
Sbjct: 227 ISAPSLHPQ--------RLPSPHPP--LQPQTASQQSPQPPAP---SSRHPQSSHHGPGP 273
Query: 467 TGVQPWNPTVSRSKVSVGTPDPLKPQENISKIFKSRNARFMNSPSPPTTLPKLSLQDPPK 526
G P N + F ++ P P P
Sbjct: 274 PMPHALQQ---------GPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTP---- 320
Query: 527 PRASNSTLTKVDPRTLSPIVPVSS-STTKVDSPTYIDNSTSPSHLSVDKHNKYARPSQIK 585
S S L P P+ P S K T I + SH KH P ++
Sbjct: 321 --PSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSH----KH-----PPHLQ 369
Query: 586 EFNPFLHPSIFYPGFLPYPPDNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNH 645
+PF P LP PP PL S+L +P S+ PP +
Sbjct: 370 GPSPFPQ----MPSNLPPPPALKPL-----------SSLPTHHPP--SAHPPPL------ 406
Query: 646 HLPPQSEKKMTPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSL 705
L PQS+ P + ++ S+S P S S S P+S A H ++ L
Sbjct: 407 QLMPQSQ----PLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGL 462
Query: 706 PSSISV-SPTTSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSI 764
P+ S TS P + P S S P KE+
Sbjct: 463 PAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEP 522
Query: 765 FSP 767
SP
Sbjct: 523 ESP 525
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 37.6 bits (87), Expect = 0.042
Identities = 50/256 (19%), Positives = 83/256 (32%), Gaps = 14/256 (5%)
Query: 602 PYPPDNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKMTPSSPR 661
PP N N +S S H S R
Sbjct: 31 LLPPRRLQRKLNPI-----SIRNGADNDIINSESKESFGKYALGHQIFSSFSSSPKLFQR 85
Query: 662 SSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISV-----SPTTS 716
++A PI+ S S + S + L+S+ + + + ++ SS S SP
Sbjct: 86 RNSAGPITHSPS--ATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDGSPVQK 143
Query: 717 NSHNLPASIKSYIPLNSISNSKV-VSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIASSS 775
+ L S ++ I + S +P S + + SP SS
Sbjct: 144 RKNPLLPSSSTHGTHPPIVFTDNNGSHAGAPNARSRKEIPSLGSQSMQLPSPHFRQKFSS 203
Query: 776 S-TSSSKSYSSSRMSPITSLASFPPTVSISSAQPLSLVTTTSITTSAPSLTTNTNEERKD 834
S TS+ SY S R + S S P S+A L + +S + S T ++ +
Sbjct: 204 SDTSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSNITPSSSNSEA 263
Query: 835 SNKDNTEQKATPVVIS 850
+ + P ++S
Sbjct: 264 MSTSSKRPYIYPALLS 279
Score = 31.0 bits (70), Expect = 3.8
Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 51/235 (21%)
Query: 550 SSTTKVDSPTYIDNSTSPSHLSVDKHNKYARPSQIKEFNPFLHPSIFYPGFLPYPPDNNP 609
S+ SP+ +++S + D+ + + + P NP
Sbjct: 88 SAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDGSPVQKRKNP 147
Query: 610 LLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKMTPSSPRSSTAQPIS 669
LLP+S + H + PP + T N +P + + + I
Sbjct: 148 LLPSS---------------STHGTHPPIVFTDNN---------GSHAGAPNARSRKEIP 183
Query: 670 TSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTTSNSHNLPASIKSYI 729
+ S M + + S ++ + S PS S +SNS
Sbjct: 184 SLGSQSMQLPSPHFRQKFS-------SSDTSNGFSYPSIRKNSRHSSNSM---------- 226
Query: 730 PLNSISNSKVVSKTFSPVKS-SPSSKEKSPTCVNSIFSPANMIASSSSTSSSKSY 783
P S++ V+ K S S S +P+ NS + STSS + Y
Sbjct: 227 PSFPHSSTAVLLKRHSGSSGASLISSNITPSSSNSE---------AMSTSSKRPY 272
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 36.3 bits (84), Expect = 0.094
Identities = 59/298 (19%), Positives = 85/298 (28%), Gaps = 36/298 (12%)
Query: 537 VDPRTLSPIVPVSSSTTKVDSPTYIDNST----SPSHLSVDKHNKYARPSQIKEFNPFLH 592
R P P T+ + T + + S + P P
Sbjct: 61 ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP--- 117
Query: 593 PSIFYPGFLPYPPDNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTL-------FNH 645
P P P P L PA +S S
Sbjct: 118 PPTPPPA-SPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL 176
Query: 646 HLPPQSEK-KMTPSSPRSSTAQPISTS-----RSSPMSMSNTCLSSSSSELPRSTAANHI 699
P ++ + +P + + P + S RSSP+S S + + + A
Sbjct: 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASS 236
Query: 700 YSLSSLPSSISVS-PTTSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPS------ 752
SS SS P PA I + S S P SS S
Sbjct: 237 SDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSP 296
Query: 753 ----SKEKSPTCVNSIFSPANMIASSSSTSSSKSYSSSRMSPITSLASFPPTVSISSA 806
S S +S + ++ SSSS SS S S+S S + A+ P S S +
Sbjct: 297 SPSPSSPGSGPAPSSPRASSS---SSSSRESSSS-STSSSSESSRGAAVSPGPSPSRS 350
Score = 31.7 bits (72), Expect = 2.5
Identities = 68/359 (18%), Positives = 102/359 (28%), Gaps = 55/359 (15%)
Query: 358 TNTVPRTSAAYETKALPQVPKSEMAISSPVPAVTSTNSIPGNRALVYPMVQEPRATTHMT 417
TV +AA + P P +P ST + + +E T
Sbjct: 52 AVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTP--- 108
Query: 418 FTNPNIKLPSAPPPSRLQPIQYQGTGHCSYMPRGSRPRAPSVPRYKTLKTGVQPWNPTVS 477
P+ P P P P + RP P P S
Sbjct: 109 -PGPSSPDPPPPTPPPASP----PPSPAPDLSEMLRPVGSPGPPPAA-----SPPAAGAS 158
Query: 478 RSKVSVGTPDPLKPQENISKIFKSRNARFMNSPSPPTTLPKLSLQDPPKPRASNSTLTKV 537
+ V+ + A ++SP S P P + +
Sbjct: 159 PAAVASDAASSRQA------------ALPLSSPEETAR-APSSPPAEPPPSTPPAAASPR 205
Query: 538 DPRTLSPIVPVSSSTTKVDSPTYIDNSTSPSHLSVDKHNKYARP---SQIKEFNPFLHPS 594
PR SPI +SS +P ++ + S + + P P+
Sbjct: 206 PPRRSSPISASASS----PAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPA 261
Query: 595 IFYPGFLPYPPDNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNHHLPPQSEKK 654
P LP N P ++ SS P + P S
Sbjct: 262 ---PITLPTRIWE-ASGWNGPSSRPGPAS---------SSSSPRERS------PSPSPSS 302
Query: 655 MTPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSP 713
P S + ++ S+S SS S++ +SSSSE R A + S S PS P
Sbjct: 303 --PGSGPAPSSPRASSSSSSSRE-SSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPP 358
Score = 31.3 bits (71), Expect = 3.6
Identities = 32/145 (22%), Positives = 47/145 (32%), Gaps = 13/145 (8%)
Query: 656 TPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTT 715
P+ RS+ ++S S S S+ C +E P + +LP+ I +
Sbjct: 221 APAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRP-----APITLPTRIWEASGW 275
Query: 716 SNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIASSS 775
+ + P S S S S S S S + +SSS
Sbjct: 276 NGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRE--------SSSS 327
Query: 776 STSSSKSYSSSRMSPITSLASFPPT 800
STSSS S S P+
Sbjct: 328 STSSSSESSRGAAVSPGPSPSRSPS 352
Score = 30.5 bits (69), Expect = 6.1
Identities = 34/172 (19%), Positives = 53/172 (30%), Gaps = 21/172 (12%)
Query: 656 TPSSPRSSTAQPI-STSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPT 714
P+S SS + S S SSP S +SS S ++ + SS SS + +
Sbjct: 283 GPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVS 342
Query: 715 TSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIASS 774
S + S P + PSS K P + SPA ++
Sbjct: 343 PGPSPSRSPSPSR-----------------PPPPADPSSPRKRPRPSRAPSSPA--ASAG 383
Query: 775 SSTSSSKSYSSSRMSPITSLASFPPTVSISSAQPLSLVTTTSITTSAPSLTT 826
T + + + A+ PL + + L T
Sbjct: 384 RPTRRRARAAVAGRARRRD-ATGRFPAGRPRPSPLDAGAASGAFYARYPLLT 434
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family,
translational repressor [Translation, ribosomal
structure and biogenesis].
Length = 777
Score = 35.9 bits (83), Expect = 0.11
Identities = 49/265 (18%), Positives = 89/265 (33%), Gaps = 11/265 (4%)
Query: 622 SALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKMTPSSPRSSTAQPISTSRSSPMSMSNT 681
A P + + + L P + PSS ++ + S S + P ++S
Sbjct: 173 PASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSPN 232
Query: 682 CLSSSSSELPRSTAANHIYSLSSLPSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVS 741
L S+S P + ++ SS T+ S+ S L ++++ V
Sbjct: 233 NLFSTSDLSPLPDTQSVENNIILNSSSSINELTSI-----YGSVPSIRNLRGLNSALVSF 287
Query: 742 KTFSPVKSSPSSKEKSPTCVNSIFSPANMIASSSSTSSSKSYSSSRMSPITSLASFPPTV 801
S + S+ S A SS + + I + PP
Sbjct: 288 LNVSSSSLAFSALNGKEVSPTGSPST-RSFARVLPKSSPNNLL----TEILTTGVNPPQS 342
Query: 802 SISSAQPLSLVTTTSITTSAPSLTTNTNEERKDSNKDNTEQKATPVVISSSENTNSSSNS 861
S P+ L T+T + + S N N+ K + + + S ++ S+ N
Sbjct: 343 LPSLLNPVFLSTSTGFSLTNLSGYLNPNKNLKKNTLSSLSNLGYSSNVPSPSSSESTRNI 402
Query: 862 VTDTVSNIKSESLSTVNTPNADKNS 886
+ + N K+ S T N + K
Sbjct: 403 LGNISPNFKTSSNLT-NLNSLLKEK 426
Score = 31.6 bits (72), Expect = 2.5
Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 17/211 (8%)
Query: 675 PMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTTSNSHNLPASIKSYIPLNSI 734
N L S S+L S + + S + + +P + + AS + LN
Sbjct: 2 NSDTMNNLLPSIKSQLHHSKKSPPSSTTSQELMNGNSTPNSFSPIPSKASSSATFTLNLP 61
Query: 735 SNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIASSSSTSSSKSYSSSRMSPITSL 794
N+ V K S SS S ++ S + +I S + S S S++ S S S
Sbjct: 62 INNSVNHKITS---SSSSRRKPSGSWSVAISSSTSGSQSLLMELPSSSFNPSTSSRNKSN 118
Query: 795 ASFPPTVSISSAQPLSLVTTTSITTSAPSLTTNT----NEERKDSNKDNTEQKATPVVIS 850
++ T ++ S T + S ++ + N N+
Sbjct: 119 SALSSTQQGNAN---------SSVTLSSSTASSMFNSNKLPLPNPNHSNSATTNQSGSSF 169
Query: 851 SSENTNSSSNSVTD-TVSNIKSESLSTVNTP 880
+ +SSS +T+ VS+IK T +P
Sbjct: 170 INTPASSSSQPLTNLVVSSIKRFPYLTSLSP 200
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain,
a specialized type of Zn-finger of 40 to 60 residues
that binds two atoms of zinc; defined by the
'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified
in a proteins with a wide range of functions such as
viral replication, signal transduction, and
development; has two variants, the C3HC4-type and a
C3H2C3-type (RING-H2 finger), which have different
cysteine/histidine pattern; a subset of RINGs are
associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 31.6 bits (72), Expect = 0.12
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 19 CKTCIVKYLKR-HKYCPIC 36
C++CI K+LK CP+C
Sbjct: 23 CRSCIDKWLKSGKNTCPLC 41
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 35.5 bits (82), Expect = 0.14
Identities = 38/258 (14%), Positives = 86/258 (33%), Gaps = 37/258 (14%)
Query: 705 LPSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSI 764
L +++ + TS + K + +SK + + +S +K+ S
Sbjct: 11 LSTTLVLPTLTSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTS- 69
Query: 765 FSPANMIASSSSTSSSKSYSSSRMSPITSLASFPPTVSISSAQPLSL---VTTTSITTSA 821
+ N S+ SS S S++ + I + P T + T++ +
Sbjct: 70 -NQDNNDKKFSTIDSSTSDSNNIIDFIYK--NLPQTNINQLLTKNKYDDNYSLTTLIQNL 126
Query: 822 PSLTTNTNEERKDSNKDNTEQKATPVVISSSENTNSSSNSVTDTVSNIKSESLSTV---- 877
+L ++ ++ + N + + + SS +N + +S D N K+ S +
Sbjct: 127 FNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPST 186
Query: 878 -----------------------NTPNADKNSVGDIKNTDVVLDKKEKTCDSKSEPSETP 914
+T N +S + +D LD D SE ++
Sbjct: 187 SNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALD---SILDQYSEDAKKT 243
Query: 915 KTNILTNGENNNHLKPQS 932
+ + + + + +
Sbjct: 244 QKDYASQSKKDKTETSNT 261
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 31.3 bits (71), Expect = 0.16
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 19 CKTCIVKYLK-RHKYCPIC 36
C CI+ +L+ + CP+C
Sbjct: 22 CSKCILSWLESGNVTCPLC 40
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and
is likely to be a general function of this domain;
Various RING fingers exhibit binding activity towards
E2 ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 30.9 bits (70), Expect = 0.21
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 18 VCKTCIVKYLK-RHKYCPIC 36
C++CI K+L+ + CPIC
Sbjct: 21 FCRSCIRKWLESGNNTCPIC 40
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein
secretion system, contains a FHA domain [Intracellular
trafficking, secretion, and vesicular transport;
Signal transduction mechanisms].
Length = 430
Score = 34.4 bits (79), Expect = 0.31
Identities = 48/275 (17%), Positives = 79/275 (28%), Gaps = 42/275 (15%)
Query: 377 PKSEMAISSPVPAVTSTNSIPGNRALVYPMVQEPRATTHMTFTNPNIKLPSAPPPSRLQP 436
+S+ SP AV+ST+ A + P + P T + + P
Sbjct: 110 DESDPDTGSPQSAVSSTDMDDDFLADIEPEPRLPPGLTDPLQLADPVPNGFSADPLSALQ 169
Query: 437 IQYQGTGHCSYMPRGSRPRAPSVPRYKTLKTGVQPWNPTVSRSKVSVGTPDPLKPQENIS 496
+ APS+ R P + S + PD L I+
Sbjct: 170 SESLIA------QPDPAGGAPSISRNSEA-----PLSDPASAGGIDTPFPDDL-DVPPIA 217
Query: 497 KIFKSRNARFMNSPSPPTTLPKLSLQDPPKPRASNSTLTKVDPRTLSPIVPVSSSTTKVD 556
S S P L P R +L +D + + T +
Sbjct: 218 ASPPGPQEGPTISASQPAQRDHAVLA--PFLRGLGVSLPDLDSDDAEAFLEEAGRTLRAC 275
Query: 557 SPTYIDNSTSPSHLSVDKHNKYARPSQIKEFNPFLHPSIFYPGFLPYPPDNNPLLPNSPD 616
+D + S RPS ++NPL PD
Sbjct: 276 IEGLLDLLRQRAKGSARLLQTMLRPS-----------------------EDNPLRFA-PD 311
Query: 617 FMKAMSALYQQNPAFHSSLPPSIS----TLFNHHL 647
+ +A+ L+ + + H S +++ L H L
Sbjct: 312 YDEALETLFAEGKSGHLSAEAAVADSFRDLRAHEL 346
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 33.3 bits (76), Expect = 0.67
Identities = 39/252 (15%), Positives = 80/252 (31%), Gaps = 21/252 (8%)
Query: 638 SISTLFNHHLPPQSEKKMTPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAAN 697
S+ T+ +H L K+ S + ++ S + ++ SSS P +
Sbjct: 356 SLKTVVDHVLRDSQSSKIQQIRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPG 415
Query: 698 HIYSLSSLPSSISVSPTTSNSHNLPASIK--------SYIPLNSISNSKVVSKTFSPVKS 749
S + + S S +IK S+ S S +
Sbjct: 416 SNVSSRRVGTPGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSETSPNSSTLLR 475
Query: 750 SPSSK---EKSPTCVNS-IFSPANMIASSS---------STSSSKSYSSSRMSPITSLAS 796
P K E+S N+ F+ + SS T + S +SR+S ++
Sbjct: 476 DPPPKKCGEESGHLPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLG 535
Query: 797 FPPTVSISSAQPLSLVTTTSITTSAPSLTTNTNEERKDSNKDNTEQKATPVVISSSENTN 856
+S +LV+ + + + + E + + + + + T+
Sbjct: 536 SYSGSIVSPPPYPTLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTS 595
Query: 857 SSSNSVTDTVSN 868
S +S + +
Sbjct: 596 SRRSSSLPSPTG 607
Score = 32.9 bits (75), Expect = 0.84
Identities = 35/245 (14%), Positives = 59/245 (24%), Gaps = 11/245 (4%)
Query: 477 SRSKVSVGTPDPLKPQENISKIFKSRNARFMNSPSPPTTLPKLSLQDPPKPRASNSTLTK 536
S S +P + S S M P S + S+
Sbjct: 379 SISVSGSDYSNPGSSIDTPSSSPSSS--VIMTPPDSGPGSNVSSRRVGTPGSKSDRVGAV 436
Query: 537 VDPRTLSPIVPVSSSTTKVDSPTYIDNSTSPSHLSVDK-HNKYARPSQIKEFNPFLHPSI 595
+ R I P +S S + + +E +
Sbjct: 437 LLRR--MNIKPTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPF 494
Query: 596 FYPGFLPYPPDNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKM 655
F L + + P SP + + SSL + + + P +
Sbjct: 495 FNKLKL----TLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTL 550
Query: 656 TPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYS--LSSLPSSISVSP 713
+ + S S + L + A + S SSLPS V
Sbjct: 551 VSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPSPTGVIG 610
Query: 714 TTSNS 718
+
Sbjct: 611 FPGSV 615
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase.
Length = 421
Score = 32.9 bits (75), Expect = 0.84
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 725 IKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIASSSSTSSSKSYS 784
+ L S + + + S SS S K + V S + +SS ++SS +S S
Sbjct: 1 MAFSSLLRSAATAPAAAARGSDFSSSSSDPSKV-SSVGFSSSLSFSGSSSGASSSLQSCS 59
Query: 785 SSRMSPITSLAS-FPPTVSISSAQ 807
+ + PI + A+ PP V SS+
Sbjct: 60 ARSVQPIKATATEAPPAVLKSSSS 83
>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger. There are 8 cysteine/
histidine residues which are proposed to be the
conserved residues involved in zinc binding. The
protein, of which this domain is the conserved region,
participates in diverse functions relevant to
chromosome metabolism and cell cycle control.
Length = 73
Score = 30.1 bits (68), Expect = 0.89
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 22 CIVKYLKRHKYCPIC 36
CI ++LK CP+C
Sbjct: 58 CISRWLKTRNTCPLC 72
>gnl|CDD|162192 TIGR01077, L13_A_E, ribosomal protein L13, archaeal/eukaryotic.
This model represents ribosomal protein of L13 from the
Archaea and from the eukaryotic cytosol. Bacterial and
organellar forms are represented by model TIGR01066
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 142
Score = 31.2 bits (71), Expect = 0.98
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 453 RPRAPSVPRYKTLKTGVQPWNP-----TVSRSKVSVGTPDPLKPQENISKIFKSRNARFM 507
PRAPS +T++ G+ P + R KV VG P L ++ + + +
Sbjct: 66 FPRAPSRIFRRTVR-GMLPHKTARGRAALRRLKVYVGIPPELDKKKRV--VVPEALVSRL 122
Query: 508 NSPSPPTTLPKLS 520
+ TL +L+
Sbjct: 123 SPTRKYVTLGELA 135
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 32.5 bits (74), Expect = 1.1
Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 12/146 (8%)
Query: 619 KAMSALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKMTPSSPRSSTAQPISTSRSSPMSM 678
M Y + S P + N K TP+ +SS +Q S S
Sbjct: 455 TVMEPPYGSTESSVPSTPSTRRNDRNIT-SNTPSLKRTPNLTKSSLSQEASLIS---KST 510
Query: 679 SNTCLSSSSSELPRSTAANHIYSLSSLPSSISV-------SPTTSNSHNLPASIKSYIPL 731
NT S+ L S SS + I S +S S + +PL
Sbjct: 511 GNTHKHSTPRRLTTLPKLPAA-SRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVPL 569
Query: 732 NSISNSKVVSKTFSPVKSSPSSKEKS 757
+ + + + T S+PS+ EK
Sbjct: 570 VRVFDIHLRASTTKGRHSTPSTNEKK 595
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 32.7 bits (74), Expect = 1.1
Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 29/217 (13%)
Query: 728 YIPLNSISNS--KVVSKTFSPVK----------SSPSSKEKSPTCVNSIFSPANMIASSS 775
YI LN S + K +P+K SS SS S S FS I S
Sbjct: 91 YIDLNERSKTPIKNNDNVTTPIKANKKEKHNLDSSSSSSISSSLTNISFFSSPTSIYSCL 150
Query: 776 STSSSKSYSSSRMSPITSLASFPPTVSISSAQPLSLVTTTSITTSAPSLTTNTNEERKDS 835
S S S +S + S S P + + ++T T ++
Sbjct: 151 SNSLSSKHSPKVIKENQSTHVN----ISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRR 206
Query: 836 NKDNTEQKATPVVISSSENTNSSSNSVTDTVSNIKSESLSTVNTPNADKNSVGDIKNTDV 895
+ NT I ++ N + + + K N++K+ V + + DV
Sbjct: 207 SPRNTST------IKNNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQN-SHFDV 259
Query: 896 VLDKKEKTCDSKSEPSETPKTNILTNGENNNHLKPQS 932
+ S ++ ++ + N+++ ++ LK +S
Sbjct: 260 ------RILRSYTKENKKDEKNVVSGIRSSVLLKRKS 290
>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936).
This family consists of several hypothetical proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 564
Score = 32.1 bits (73), Expect = 1.5
Identities = 47/193 (24%), Positives = 67/193 (34%), Gaps = 24/193 (12%)
Query: 643 FNHHLPPQSEKKMTPSSPRSSTAQPISTSR---SSPMSMSNTCLSSSSSELPRSTAANHI 699
F+ + ++K S+PR + S S SSP + S S L T A
Sbjct: 124 FSDAVIQVIKRKKASSAPRRGSWDSSSKSASIDSSPTVIGPRPRSFSELNLTDRTPAKVR 183
Query: 700 YSLSSL--PSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVK--SSPSSKE 755
S S L PS + S+S +SI S S S K V+ +P K S S +
Sbjct: 184 SSRSELGAPSPSGGTSCPSSSGGRRSSIGSRRLRGSASLRKKVAVLSAPRKPGSRSSDCK 243
Query: 756 KSPTCVNSI----------------FSPANMIASSSST-SSSKSYSSSRMSPITSLASFP 798
SP +S S ++ AS T SSKS + + S
Sbjct: 244 SSPRARSSSAKSPFKSSIQRKATKALSKLSLRASPKDTSKSSKSEVAPPKKSEAKVPSSS 303
Query: 799 PTVSISSAQPLSL 811
+ + SL
Sbjct: 304 KKWTDGNVSWDSL 316
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 32.0 bits (72), Expect = 2.0
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 768 ANMIASSSSTSSSKSYSSSRMSPITSLASFPPTVSISSAQPLSLVTTTSITTSAPSLTTN 827
N + S+ SS+ ++SS S + + ++ PP + S P + S +TS P
Sbjct: 569 TNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSP-PATPSKIVSPSTSPP----- 622
Query: 828 TNEERKDSNKDNTEQKATPVVISSSENTN-SSSNSVTDTVSNIKSESLST 876
S + + ++S+E + SS V T S++ S+ST
Sbjct: 623 --ASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTESSVSMVSMST 670
Score = 30.8 bits (69), Expect = 4.0
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 705 LPSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSI 764
+P + +P ++NS ++ S +S S S VV+ P S P+ SP S
Sbjct: 558 IPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVA----PSTSPPAGHLGSPPATPSK 613
Query: 765 FSPANMIASSSSTSSSKSYSSSRMSPITSLA--SFPPTVSISSAQPLSLVTTTSITT 819
+ +S S + SS S I + + P SI A S V+ S++T
Sbjct: 614 IVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTESSVSMVSMST 670
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 31.4 bits (71), Expect = 2.1
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 682 CLSSSSSELPRSTAANHIYSLSSLPSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVS 741
+SS+S +P S + S S + S +S+S LP + S + + N +
Sbjct: 171 DVSSTSEHIPSSNTSPSTSEPVSTLRSPTPSSKSSSSLGLP-DLSSTSDWSGMINKEF-- 227
Query: 742 KTFSPVKSS 750
T P +S
Sbjct: 228 -TLQPKSAS 235
Score = 29.5 bits (66), Expect = 9.0
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 657 PSSPRSSTAQPISTSRS-SPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTT 715
S+ ST++P+ST RS +P S S++ L + + P S S+ P
Sbjct: 181 SSNTSPSTSEPVSTLRSPTPSSKSSSSLGLPDLSSTSDWSGMINKEFTLQPKSASLPPYK 240
Query: 716 SNSHNLPASIKSYIPLNSISN 736
+L S + ++
Sbjct: 241 ITLDDLFGSREEFLSYGGGGR 261
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 31.0 bits (70), Expect = 3.1
Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 22/170 (12%)
Query: 634 SLPPSISTLFNHHLPPQSEKKMTPSSPRSSTAQPISTSRSSPMSMSNTCLS-SSSSELPR 692
+LP NH L ++K SS ++ + + ++S + S + S S + EL
Sbjct: 200 ALPKEE----NHTLSVTDKEKSEASSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEY 255
Query: 693 STAANHIYSLSSLP---------SSISVSPTTSNSHNL--------PASIKSYIPLNSIS 735
S + + S + P+S + + S
Sbjct: 256 SEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTS 315
Query: 736 NSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPANMIASSSSTSSSKSYSS 785
NS + KSS S+K + NS + S +SS S
Sbjct: 316 NSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNES 365
>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase. In the
presence of O2, the benzoyl-CoA oxygenase/reductase
BoxBA BoxAB converts benzoyl-CoA to
2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this
family, BoxC, homologous to enoyl-CoA
hydratases/isomerases, hydrolyze this compound to
3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Length = 546
Score = 30.9 bits (70), Expect = 3.7
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 380 EMAISSPVPA------VTSTNSIPGNRALVYPMVQEP--RATTHMTFTNPNIKLPSAPPP 431
E+A S PA +T + YP V RA T T +K P A P
Sbjct: 225 ELAAQSDRPADAKGVQLTPLERTIDEDGVRYPTVDVAIDRAARTATIT---LKGPKAAQP 281
Query: 432 SRLQPIQYQG 441
+ + I QG
Sbjct: 282 ADIAAIVAQG 291
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 30.9 bits (70), Expect = 4.5
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Query: 598 PGFLPYPPDNNPLLPNSPDFMKAMSALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKMTP 657
P P PP +P F+ A S Q P P P ++M P
Sbjct: 200 PPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPP--LPPQLPQQPPPLQQPQFPGLSQQMPP 257
Query: 658 SSPRSSTAQPISTSRSSPMSMSNT 681
P+ Q + N
Sbjct: 258 PPPQPPQQQQQPPQPQAQPPPQNQ 281
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 30.6 bits (69), Expect = 5.0
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 16/120 (13%)
Query: 793 SLASFPPTVSISSAQPLSLVTTTSITTSAPSLTTNTNEERKDSNKDNTEQKATPVVISSS 852
S ++ T+++ +A L I T+ P+ +T ++ TPV ++
Sbjct: 7 SKSAVALTLALLTASNPKLAQAEEIVTTTPATSTEA-------------EQTTPVESDAT 53
Query: 853 ENTNSSSNSVTDTVSNIKSESLSTVNTPNADKNSVGDIKNTDVVLDKKEKTCDSKSEPSE 912
E +++ V T + S T T + + T S+P E
Sbjct: 54 EEADNTETPVAATTAAEAPSSSETAETSD---PTSEATDTTTSEARTVTPAATETSKPVE 110
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 30.8 bits (69), Expect = 5.0
Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 13/128 (10%)
Query: 407 VQEPRATTHMTFTNPNIKLPSAPPPSRLQPIQ--------YQGTGHCSYMPRGSRPRAPS 458
VQ+P+ + P AP P QP Q Q + P+ +P+ P
Sbjct: 752 VQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811
Query: 459 VPRYKTLKTGVQPWNPTVSRSKVSVGTPDPL-KPQENISKIFKSRNARFMNSPSPPTTLP 517
P+ + QP P + + +PQ+ + RN P T LP
Sbjct: 812 APQPQYQ----QPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLP 867
Query: 518 KLSLQDPP 525
L L PP
Sbjct: 868 SLDLLTPP 875
>gnl|CDD|178608 PLN03046, PLN03046, D-glycerate 3-kinase; Provisional.
Length = 460
Score = 30.3 bits (68), Expect = 5.2
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 19/131 (14%)
Query: 701 SLSSLPSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTC 760
SLSSL SS + P Y P+ S + F+P+ + + K +
Sbjct: 6 SLSSLISS------NLQHYMNPIHAADY-PIPCASAAAFN---FNPISNPFNLKRRP--- 52
Query: 761 VNSIFSPANMIASSSSTSSSKSYSSSRMSPITSLASFPPTVS--ISSAQPLSLVTTTSIT 818
+SP++ + +S SY SS++S + S P I + TT+ T
Sbjct: 53 ----YSPSSHKFNDRVAASCSSYPSSKLSSRKTHLSCPGCGCSWIQDNSMVHDYATTAAT 108
Query: 819 TSAPSLTTNTN 829
+ S ++
Sbjct: 109 SKRCSSLPTSS 119
>gnl|CDD|188234 TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype
I-B/HMARI. This domain is found in the C-terminal 2/3
of a family of CRISPR associated proteins of the Hmari
subtype. Except for the two sequences from halophilic
archaea this domain contains a pair of CXXC motifs
[Mobile and extrachromosomal element functions, Other].
Length = 393
Score = 30.1 bits (68), Expect = 5.6
Identities = 25/112 (22%), Positives = 34/112 (30%), Gaps = 26/112 (23%)
Query: 15 SFPVCKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVVYKL--IPGLYE---- 68
++P+C+ C L K+ C D R YKL IPG
Sbjct: 30 NYPICEDCYKDVLIGRKFIEECL--------------DRRFGGNTYKLPIIPGTIFPKVA 75
Query: 69 ----KEMQRRQMFFSSTPIQNSLGLTGEDKGIITESSDIILPDENISITLEY 116
KE ++ F T E+ G D L + I L Y
Sbjct: 76 QDLYKEEIKKIYEFRKNDFLQEKFYT-EEAG-YEIELDEDLEENKIGYYLRY 125
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 30.3 bits (68), Expect = 5.7
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 11/176 (6%)
Query: 629 PAFHSSLPPSISTLFNHHLPPQSEKKMTPSSPRSSTAQPISTSR------SSPMSMSNTC 682
P ++ I TL + E+K S S S S+ S S+S +
Sbjct: 590 PVRNTQNSLQIDTLDHESSEQPLEEKNALHSSVSKLNTEESPSKMVEIRPSCQDSVSESG 649
Query: 683 LSSSSSELPRSTAANHIYSLSSLPSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVSK 742
+S+ S S + + + PSS+S+ P S L + S P I NS+ +
Sbjct: 650 VSTGVSVADESNDSENELVNCASPSSLSIVPV-EVSPVLKSPTLSVSP--RIRNSRKSLR 706
Query: 743 TFSPVKSSP--SSKEKSPTCVNSIFSPANMIASSSSTSSSKSYSSSRMSPITSLAS 796
T S + +S S E T ++ S A + ++SS++ S S S ++P LA+
Sbjct: 707 TSSMLTASQKDSEDESKLTPEDAEPSFAKSMKNNSSSALSTQKSKSFLAPTEHLAA 762
>gnl|CDD|168775 PRK07034, PRK07034, hypothetical protein; Provisional.
Length = 536
Score = 29.8 bits (66), Expect = 7.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 206 SETEEAENSKRLKLSEESNTDNSQNSRHKPIT--------NDAIPIGCDINSNADNNTNT 257
S T +AEN K + ++ +N + P+T ND+ P G + N N DNN
Sbjct: 50 SSTSQAENYKEGLADQAASGNNMARTSAPPVTLYQQQPNANDSYPNGNNNNPNGDNNNPN 109
Query: 258 GN 259
G+
Sbjct: 110 GS 111
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 29.8 bits (66), Expect = 7.5
Identities = 41/240 (17%), Positives = 95/240 (39%), Gaps = 24/240 (10%)
Query: 656 TPSSPRSSTAQPISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPTT 715
TP +P + +T +++P + + T + ++ + + + +
Sbjct: 146 TPVAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVK 205
Query: 716 SN------SHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIFSPA- 768
S S S++ + N++S+S + +K + + +P +PA
Sbjct: 206 SGDTIWALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQT--ANTATPKAEVKTEAPAA 263
Query: 769 -NMIASSSSTSSSKSYSSSRMSPITSLASFPPTVSISSAQPLSLVTTTSITTSAPSLTTN 827
A +++ + +++ T+ P +A+P APS TN
Sbjct: 264 EKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAPTEAAKP----------APAPSTNTN 313
Query: 828 TNEERKDSNKDNTEQKATPVVISSSENTNSSSNSVTDTVSNIKSESLSTVNTPNADKNSV 887
N+ ++N + + + S+NTN+++NS T+T SN + S+ N N+ +++
Sbjct: 314 ANKTNTNTNTNTNNTNTS----TPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSSASAI 369
>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 106
Score = 28.1 bits (63), Expect = 8.2
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 56 QNVVYKLIPGLYEKE---MQRRQMFFSSTPIQNSLGLTGEDKGIITESSDIILPDENISI 112
+NVVY +PG + ++ + S P+ +GE GIIT + P+E
Sbjct: 1 ENVVYVTLPGTRDDVLELLKEYK--VSGVPVVKK---SGELVGIITRKDLLRNPEEEQLA 55
Query: 113 TL----EYLAHSSDDINKAV 128
L DD+ +A
Sbjct: 56 LLMTRDPPTVSPDDDVKEAA 75
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 29.5 bits (66), Expect = 9.5
Identities = 38/228 (16%), Positives = 66/228 (28%), Gaps = 34/228 (14%)
Query: 497 KIFKSRNARFMNSPSPPTTLPKLSLQDPPKPRASNSTLTKVDPRTLSPIVPVSSSTTKVD 556
+ A + PT L + +++ + + DP ++ I T +
Sbjct: 148 EAPARTQAEAETMSAEPTVATPLQER---SVESADDVVNRADPNIITRIKNAEPKTIATE 204
Query: 557 -------SPTYIDNSTSPSHLSVDKHNKYARPSQIKEFNPFLHPSIFYPGFLPYPPDNNP 609
S I N L++D+ Y + +FN H S+
Sbjct: 205 LVQESNESEPVITNEQDFDRLNIDQLVDYINKNNDGQFNFDAHDSV-------------- 250
Query: 610 LLPNSPDFMKAM---SALYQQNPAFHSSLPPSISTLFNHHLPPQSEKKMTPSSPRSSTAQ 666
+ +F K + Q P S T P +E+ + +P + A
Sbjct: 251 --DDVRNFAKTVWRQKNTPAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTPAM 308
Query: 667 PISTSRSSPMSMSNTCLSSSSSELPRSTAANHIYSLSSLPSSISVSPT 714
S ++ T P A SSLP S S +
Sbjct: 309 YSSDYQAPKPEPIYTWEELLRERFPSDLFAI-----SSLPDSDSEASD 351
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 29.4 bits (66), Expect = 9.8
Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 4/128 (3%)
Query: 706 PSSISVSPTTSNSHNLPASIKSYIPLNSISNSKVVSKTFSPVKSSPSSKEKSPTCVNSIF 765
+S+ + T S+ P ++K L + S V P++K ++
Sbjct: 702 TNSLYKATTLSSEAKNPDTVKIGQALT-VYGSLEVFPAGENWGFIPTTKRVKVRIMDPAS 760
Query: 766 SPANMIASSSSTSSSKSYSSSRMSPITSLASF---PPTVSISSAQPLSLVTTTSITTSAP 822
I +S + ++ S ++ S +++ + +S VT T TTS+P
Sbjct: 761 GTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSP 820
Query: 823 SLTTNTNE 830
S T T+
Sbjct: 821 SPTQTTSP 828
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.123 0.346
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,424,262
Number of extensions: 3964077
Number of successful extensions: 3789
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3487
Number of HSP's successfully gapped: 219
Length of query: 937
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 831
Effective length of database: 6,236,078
Effective search space: 5182180818
Effective search space used: 5182180818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (28.6 bits)