RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8409
(937 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 35.2 bits (81), Expect = 0.002
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 19 CKTCIVKYLKRHKYCPIC--DVLV 40
C+ +L H CP+C V+V
Sbjct: 32 HAECVDMWLGSHSTCPLCRLTVVV 55
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 34.9 bits (80), Expect = 0.003
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 19 CKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQ 56
C CI ++++++ CP+C V V + +I D+
Sbjct: 29 CYVCITRWIRQNPTCPLCKVPV--ESVVHTIESDSEFG 64
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 33.2 bits (75), Expect = 0.024
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 19 CKTCIVKYLKRHKYCPIC 36
CI ++LK + CP+
Sbjct: 62 HFHCISRWLKTRQVCPLD 79
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 35.1 bits (79), Expect = 0.037
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 14/83 (16%)
Query: 565 TSPSHLSVDKHNKYARPSQIKEFNPFLHPSIFYPGFLPYPPDNNPLLPNSPD-------- 616
++P D + + F S F +P P L + +
Sbjct: 337 STPFQFFSDHAGELGQAVSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREGGE 396
Query: 617 ------FMKAMSALYQQNPAFHS 633
+ + L +++P H+
Sbjct: 397 HARTLRLYRDLLRLRREDPVLHN 419
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 32.7 bits (74), Expect = 0.039
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 19 CKTCIVKYLKRHK---YCPICDVLVYKTKPLQSIRPDTRLQNVVYKLI 63
CK C++K L + K CP+C + K +S++ TR +V +L+
Sbjct: 44 CKFCMLKLLNQKKGPSQCPLCKNDITK----RSLQESTRFSQLVEELL 87
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 29.6 bits (66), Expect = 0.32
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 19 CKTCIVKYLK-RHKYCPICDVLVYKTKPL 46
C +C+ + + + CP C + T+P+
Sbjct: 46 CTSCLTSWQESEGQGCPFCRCEIKGTEPI 74
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 29.5 bits (66), Expect = 0.42
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 19 CKTCIVKYLKRH-KYCPIC 36
C+ CI++ LK YCP C
Sbjct: 46 CRICILRCLKVMGSYCPSC 64
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 30.7 bits (68), Expect = 0.74
Identities = 8/95 (8%), Positives = 26/95 (27%), Gaps = 19/95 (20%)
Query: 558 PTYIDNSTSPSHLSVDKHNKYARPSQIKEFNPFLH-----PSIFY-------PGFLPYPP 605
S L + + + + ++ + ++ +F +
Sbjct: 298 SHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLLFMGNEFAQGREWNHDAS 357
Query: 606 DNNPLLPNSP-------DFMKAMSALYQQNPAFHS 633
+ LL ++ ++ Y+ + A H
Sbjct: 358 LDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHE 392
>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix
orenii [TaxId: 31909]}
Length = 409
Score = 30.0 bits (66), Expect = 1.6
Identities = 5/28 (17%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 606 DNNPLLPNSPDFMKAMSALYQQNPAFHS 633
+ + LL + + + +NP F++
Sbjct: 386 NLDSLL----NHYRRLIHFRNENPVFYT 409
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 30.0 bits (66), Expect = 1.6
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 605 PDNNPLLPNSPDFMKAMSALYQQNPAFHSS 634
D + F + + A + +PA S
Sbjct: 448 TDQSNFY----TFAQRLIAFRKAHPALRPS 473
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 26.7 bits (59), Expect = 4.0
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 15 SFPVCKTCIVKYLKR--HKYCPIC 36
FP C+ C +Y +R + CP C
Sbjct: 42 GFPACRPC-YEYERREGTQNCPQC 64
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of
TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 25.9 bits (57), Expect = 5.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 131 RRYLRCKASAPVSILHKFLKNKFNLSNKHCVELV 164
RRYL K +L KF K LS++ V ++
Sbjct: 16 RRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVL 49
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 26.3 bits (57), Expect = 6.0
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 19 CKTCIVKYLKRHKYCPICDVLVYKTKPLQSIRPDTRLQNVV---YKLIPGLYEKEM 71
C C+ + CP+C + Q ++ + +L +++ KL L++ E+
Sbjct: 46 CSNCVSDCIGTG--CPVCYTPAWI----QDLKINRQLDSMIQLCSKLRNLLHDNEL 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.123 0.346
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,025,710
Number of extensions: 133479
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 20
Length of query: 937
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 843
Effective length of database: 1,116,976
Effective search space: 941610768
Effective search space used: 941610768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.0 bits)