BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8410
         (951 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|345484997|ref|XP_001606574.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Nasonia
           vitripennis]
          Length = 1122

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/967 (48%), Positives = 619/967 (64%), Gaps = 109/967 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY- 99
           L  P L N T  +FG+P  KQN  L  LGAPHI SF++ L +GL  A++++ P+   +  
Sbjct: 2   LIEPKLTN-TAPDFGQPAAKQNPLLQRLGAPHIDSFNYALGQGLTEAIDNLLPVYLTLAS 60

Query: 100 GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           G  ++L I    I+ P VP+G +G+  +K YPTE RQ  + Y G  N  + WS +G+   
Sbjct: 61  GDRIELRIEDVTINHPTVPSGTIGVKNHKIYPTECRQRAATYKGKINAKIGWSINGRKQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           T  + +G VPIM+KS +CHL N+ PAQL+   EH  EWGGYFI+ GHE+L+R+L+  RRN
Sbjct: 121 TVERSLGEVPIMVKSNKCHLNNMKPAQLVAVKEHEQEWGGYFIIKGHERLIRMLLMTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
           +PIAIKR+ WK RG  FSDLG+ +R V+ D +ATNN LH+VT+GSA+ MF+HRK +    
Sbjct: 181 YPIAIKRSGWKQRGDQFSDLGILLRCVRDDNTATNNSLHYVTDGSAKLMFTHRKVLYYVP 240

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C+L MM+++HE+ +H+    K + G++F
Sbjct: 241 LILMLKCLMNVSDKYIYNALTAGCDDDVYYKNCVLNMMRTVHEKDLHSHEQCKAYIGKMF 300

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           + K      +  ++E+CD+++  CI  HLDD  DKF  L  MT KLF +      ++  D
Sbjct: 301 RIKFYELPVNATDIEVCDFIIKYCIAIHLDDPADKFHLLCFMTKKLFALADNKCAVEGAD 360

Query: 364 SIMLQEIMTGGSLYLQLLKKE-----------------KSGTSAVLKESDIYAAFRA-SS 405
           ++M+QE + GG LYLQ++K++                   G +  L   ++  A ++  +
Sbjct: 361 AVMVQECLLGGHLYLQVIKEKLYSWLMGLRSVIVRRAKNVGNNFTLNVQEMLNALKSCGT 420

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
            +S M NFLATGNV +   + L LMQ++G  I+AENINRMRYMSHFRA+HRGS+FQEMR+
Sbjct: 421 FDSQMENFLATGNVRS--QTGLGLMQSTGLSIVAENINRMRYMSHFRAIHRGSFFQEMRT 478

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +E RQL  DAWGFICPVHTPDG PCGLLNHLT NC ++++   K+   IP++L+ LGMLP
Sbjct: 479 TEARQLLPDAWGFICPVHTPDGAPCGLLNHLTMNCIVTKHPDPKLKNAIPTILLDLGMLP 538

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           ++  I    + +  V+LDGR++G I D I   +V KLR+LKI  EK+P ++EIV +  P+
Sbjct: 539 MS--IADDWKNSYTVVLDGRVIGLIEDNIVGRVVDKLRVLKI-NEKVPPTMEIVLV--PK 593

Query: 586 KGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
           K +   YPG++LFTGP RM+RPV NL+    E IGTFEQV+++IC+T +EA  G+TTH+E
Sbjct: 594 KNVPSQYPGVFLFTGPTRMMRPVKNLSVNKTELIGTFEQVYLNICVTAEEADEGLTTHQE 653

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           LSKT FLSNLA LIPMPDCNQSPRNMYQCQMGKQTMGTPCL W+ Q   KLYRLQTP++P
Sbjct: 654 LSKTTFLSNLACLIPMPDCNQSPRNMYQCQMGKQTMGTPCLTWQQQAETKLYRLQTPSTP 713

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVH+D +++D F MGTNAIVAVISYTGYDMEDAMI+NKS+YERGFAHG I+KS FIE
Sbjct: 714 LFRPVHHDNINLDEFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAHGMIYKSEFIE 773

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                          +  DYF RDP    L 
Sbjct: 774 LK------------------------------------------EQSDYFARDPNRADLV 791

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
           DKL  DGL   G  L E DP YSY++     ++  +Y GKE   V+ +++        S 
Sbjct: 792 DKLDSDGLPNPGTILQEGDPYYSYYQVDHKTFLIGKYKGKEAAFVDNIKLCGSLQ---SS 848

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
           T     I  RI RNP+VGDKFASRAGQKGICS KWPAEDLPFT++GL+PDIVFNPHGFPS
Sbjct: 849 TKGKVCITLRISRNPSVGDKFASRAGQKGICSQKWPAEDLPFTETGLIPDIVFNPHGFPS 908

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 909 RMTIAMM 915



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 42/58 (72%), Gaps = 5/58 (8%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            + GYNYYGTE +YSG+DG  M A IFFGVVHYQRLRHMVSDKWQ +     D   R P
Sbjct: 954  QGGYNYYGTERIYSGIDGREMTADIFFGVVHYQRLRHMVSDKWQVRSTGPIDVLTRQP 1011


>gi|383852408|ref|XP_003701720.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
           [Megachile rotundata]
          Length = 1122

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/967 (47%), Positives = 629/967 (65%), Gaps = 108/967 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           L  P L N T ++F K P+KQN  L +LG PHI SF++ML++GL  AV+D   +   +  
Sbjct: 2   LIEPKLTN-TSEDFNKSPEKQNLLLQSLGTPHIDSFNYMLEDGLSQAVQDNPLVYIHLPN 60

Query: 101 KT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           +  + L I   +I +P VP+G +G+  +K YPTE RQ    Y G   V + WS +GK   
Sbjct: 61  ENKVALWIDDVSIHQPIVPSGTIGVKNHKIYPTECRQRGCTYKGKITVKLGWSVNGKLQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           T  +++G +PIM+KS RCHL  ++P +LI  GEH  EWGGYFI+ G E+++R+L+  RRN
Sbjct: 121 TLERDLGEIPIMIKSNRCHLHKMSPKELIAHGEHEQEWGGYFIIKGLERIIRMLLMTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
           +PIAIKR+ WK RG+ FSDLG+ +RSV+ D +A+NN LH+V +GSA+ MF+HRK +    
Sbjct: 181 YPIAIKRSGWKARGVQFSDLGLLLRSVRDDNTASNNTLHYVIDGSAKLMFTHRKVLYYVP 240

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C+L M++++HE+ +H+  D K + G++F
Sbjct: 241 LILILKCLIDASDIFIYNALTAGCEDDPYYKGCILNMLRAIHEQNLHSHEDCKTYIGRMF 300

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           + K     +   + ++CD+++ +CI  HLD+  DKF  L  MT KLF +      ++  D
Sbjct: 301 RIKFFELPQDATDTDVCDFIIKHCIAIHLDNPMDKFYLLVFMTKKLFALANNKCAVEGAD 360

Query: 364 SIMLQEIMTGGSLYLQLLKKE-----------------KSGTSAVLKESDIYAAFRASS- 405
           ++M+QE + GG LYLQ+LK++                  +G    L   ++    +  + 
Sbjct: 361 AVMMQECLLGGHLYLQVLKEKLYSWLNSLKMNILKRARSAGNRYTLNVQEMLNVMKHGNF 420

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           ++S M NFL+TGN+ +  ++ L LMQ+SG  I+AENINRMRYMSHFRA+HRGS+FQEMR+
Sbjct: 421 LDSQMENFLSTGNIKS--STGLGLMQSSGLTIVAENINRMRYMSHFRAIHRGSFFQEMRT 478

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +E RQL  DAWGFICPVHTPDG PCGLLNHLT NC I+++   K+ A IP +L+ LGM+P
Sbjct: 479 TEARQLLPDAWGFICPVHTPDGAPCGLLNHLTMNCIITKHPDPKLKANIPIILMDLGMIP 538

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           L+ V     + + +VMLDG+++G I + I + +  KLR+LKI GE++P+ +EIV +  P+
Sbjct: 539 LSIVDNW--QNSYVVMLDGKLIGLIDNNIISRVTDKLRLLKIKGEEVPRIMEIVLV--PK 594

Query: 586 KGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
           K +   YPGLYLFT   RM+RPVMNLA+  IE+IGTFEQV+++IC+T +EAY G+TTH+E
Sbjct: 595 KNVPAQYPGLYLFTNAARMMRPVMNLASKKIEYIGTFEQVYLNICVTPEEAYEGLTTHQE 654

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           LSKT FLSNLA+LIPMPDCNQSPRNMYQCQMGKQTMGTPC  W+ Q   KLYRLQTPA+P
Sbjct: 655 LSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKLYRLQTPATP 714

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
           FFRPVHYD +++D+F MGTNAIVAVISYTGYDMEDAMI+NK++Y+RGFAHG I+KS F++
Sbjct: 715 FFRPVHYDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFAHGMIYKSEFVD 774

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                            + YF R+P    L 
Sbjct: 775 LKD------------------------------------------QRSYFARNPDKPELA 792

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            K+  DGL   G  + E D  Y Y+   ++ YVT +Y GKE+  ++ V++        S 
Sbjct: 793 AKIDVDGLPVPGTIIKEGDIYYCYYDADQSTYVTGKYHGKEDAHIDNVKLCGTL---HSH 849

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
            P  A I +RI RNP+VGDKFASRAGQKGICS KWPAEDLPFT++GL+PDIVFNPHGFPS
Sbjct: 850 IPRRACITFRISRNPSVGDKFASRAGQKGICSQKWPAEDLPFTETGLIPDIVFNPHGFPS 909

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 910 RMTIAMM 916



 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 41/56 (73%), Gaps = 5/56 (8%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            GYNYYGTE +YSG+DG  M A IFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 957  GYNYYGTERLYSGIDGREMTADIFFGIVHYQRLRHMVSDKWQVRSTGPIDVLTRQP 1012


>gi|328792060|ref|XP_001120416.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Apis
           mellifera]
          Length = 1122

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/967 (48%), Positives = 626/967 (64%), Gaps = 108/967 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           L  P L N T KNFGKPP+KQN  L  LGAPHI SF++ML++GL  AV+D   +   +  
Sbjct: 2   LIEPKLTN-TSKNFGKPPEKQNPLLQRLGAPHIDSFNYMLEDGLCKAVKDNPHVYIHLPN 60

Query: 101 K-TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           K  + L I   +I +P VP+G +GI  +K YPTE RQ    Y G   V + WS + K   
Sbjct: 61  KDKVALWIDDVSIDQPSVPSGIIGIKTHKIYPTECRQRGCSYKGKITVKLGWSINDKLQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           T  +++G +PIM+KS RCHL  + P  LI  GEH  EWGGYF++ G E+++R+L+  RRN
Sbjct: 121 TLARDLGEIPIMIKSNRCHLNKMNPKDLILHGEHEQEWGGYFVIKGLERIIRMLLMTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
           +PIAIKR+ WK RG+ FSDLG+++RSV+ D +  NN LH+VT+GSA+ MFSH+K +    
Sbjct: 181 YPIAIKRSGWKTRGIQFSDLGLFLRSVRDDNTTANNTLHYVTDGSAKLMFSHKKVLYYVP 240

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C+L M++++HE+G++   + K + G++F
Sbjct: 241 LILILKCLVDVSDIFIYNVLTAGCEYDLYYKGCILNMLRAVHEQGLNNHEECKAYIGKMF 300

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           + K         ++++CD+++ +CI  HL++  DKF  L+ MT KLF +      ++  D
Sbjct: 301 RIKFFELPEDATDIDVCDFIIKHCIAIHLNNPLDKFYLLAFMTKKLFALANNKCAVEGAD 360

Query: 364 SIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRA------------------SS 405
           S+M+QE + GG LYLQ+LK++       LK S +  A  A                  +S
Sbjct: 361 SVMMQECLLGGHLYLQVLKEKLYSWLTNLKMSILKRARSAGNRYTLNVQEMLNIMKYGNS 420

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +ES M NFL+TGN+ +  ++ L LMQ +G  I+AENINRMRYMSHFRA+HRGS+FQEMR+
Sbjct: 421 LESQMENFLSTGNLRS--STGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRT 478

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +E RQL  DAWGFICPVHTPDG PCGLLNHLT NC I+++  +K+ A IP +L+ LGM+P
Sbjct: 479 TEARQLLPDAWGFICPVHTPDGAPCGLLNHLTMNCIITKHPDAKLKANIPIILMDLGMIP 538

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           L+  I    + + +VMLDG+++G I D I   +  KLR+LKI G+++P  +EI  +  P+
Sbjct: 539 LS--IADNWKNSYIVMLDGKLIGLIDDNIIARVTDKLRLLKIKGQEVPYMMEIALV--PK 594

Query: 586 KGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
           K +   YPGLYLFT P RM+RP+MNLAA NIE+IGTFEQ+++DIC+T +EAY G+T+H+E
Sbjct: 595 KTVPAQYPGLYLFTSPARMMRPIMNLAAKNIEYIGTFEQIYLDICVTPEEAYEGLTSHQE 654

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           LSKT FLSNLA+LIPMPD NQSPRNMYQCQM KQTMGTPC  W+ Q   KLYRLQTPA+P
Sbjct: 655 LSKTAFLSNLASLIPMPDYNQSPRNMYQCQMSKQTMGTPCHTWQLQSETKLYRLQTPATP 714

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVH+D +++D+F MGTNAIVAVISYTGYDMEDAMI+NK++Y+RGFAHG I+KS FI+
Sbjct: 715 LFRPVHHDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFAHGMIYKSEFID 774

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                            K YF R+P    L 
Sbjct: 775 LKD------------------------------------------QKSYFARNPDKSELV 792

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
           +KL  DGL   G  ++E D  Y Y+   ++ Y+T +Y GKE+  V+ V++          
Sbjct: 793 EKLDIDGLPLPGTIISEGDVYYCYYDADQSTYITGKYHGKEDAYVDTVKLCGTLHNH--- 849

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
            P  A I +RI RNP+VGDKFASRAGQKGICS KW AEDLPFT++GL+PDIVFNPHGFPS
Sbjct: 850 IPRRACITFRIPRNPSVGDKFASRAGQKGICSQKWSAEDLPFTETGLIPDIVFNPHGFPS 909

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 910 RMTIAMM 916



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 41/56 (73%), Gaps = 5/56 (8%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            GYNYYGTE MYSG+DG  M A IFFGVVHYQRLRHMVSDKWQ +     D   R P
Sbjct: 957  GYNYYGTERMYSGIDGREMTADIFFGVVHYQRLRHMVSDKWQVRSTGPIDVLTRQP 1012


>gi|340712517|ref|XP_003394805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Bombus
           terrestris]
          Length = 1122

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/968 (47%), Positives = 632/968 (65%), Gaps = 110/968 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           L  P L N T  NFGKPP+KQN  L +LGAPHI SF++ML++GL  AV D   +   +  
Sbjct: 2   LIEPKLTN-TSTNFGKPPEKQNPLLQSLGAPHIDSFNYMLEDGLSEAVRDNPFVYIYLPN 60

Query: 101 K-TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           +  + L I   +I +P +P+G +G+  +K YPTE RQ    Y G   V + WS +     
Sbjct: 61  EDKIALWIDDVSIHQPNIPSGAIGVKNHKIYPTECRQRGCTYKGKITVKLGWSINNNVQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           T  +++G +PIM+KS RCHL  ++P  L+  GEH  EWGGYFI+ G E+++R+L+  RRN
Sbjct: 121 TLERDLGEIPIMIKSNRCHLNKMSPKDLVAHGEHEQEWGGYFIIKGLERIIRMLLLTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
           +PIAI+R++WK RG+ FSDLG+ +RSV+ D +  NN LH+VT+GSA+ MFS+RK +    
Sbjct: 181 YPIAIRRSSWKARGIQFSDLGLLLRSVRDDNTTANNTLHYVTDGSAKLMFSYRKVLYYVP 240

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C+L M++++HE+G+++  + K + G++F
Sbjct: 241 LILMLKCLVDVSDIFIYNALTAGCEDDLYYKGCILNMLRAVHEQGLNSHEECKAYIGRMF 300

Query: 304 KEKLQYDLRH-LNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
           + KL ++L H   ++++CD+++ +CI  HL D  DKF  L  MT KLF +      ++  
Sbjct: 301 RIKL-FELPHDATDIDVCDFIIKHCIAIHLHDPLDKFYLLVFMTKKLFALANNKCAVEGA 359

Query: 363 DSIMLQEIMTGGSLYLQLLKKE-----------------KSGTSAVLKESDIYAAFR-AS 404
           D++M+QE + GG LYLQ+LK++                  +G    L   ++    +  S
Sbjct: 360 DAVMMQECLLGGHLYLQVLKEKLYSWLTGLKMGILKRARSAGNRYTLNVQEMLNVMKHGS 419

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
           S+ES M NFL+TGN+ +   + L LMQ++G  I+AENINRMRYMSHFRA+HRGS+FQEMR
Sbjct: 420 SLESQMENFLSTGNLRSP--TGLGLMQSTGLTIVAENINRMRYMSHFRAIHRGSFFQEMR 477

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++E RQL  DAWGFICPVHTPDG PCGLLNHLT NC I+++   K+ A +P +L+ LGM+
Sbjct: 478 TTEARQLLPDAWGFICPVHTPDGAPCGLLNHLTMNCIITKHTNPKLKANVPIILMDLGMI 537

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           PL+  I    +++ +V+LDG+++G I D I + +  KLR+LKI G+++P ++EI  +  P
Sbjct: 538 PLS--IADNWKKSYIVILDGKLIGLIDDNIISRVTDKLRLLKIKGQEVPCTMEIALV--P 593

Query: 585 EKGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
           +K +   YPGLYLFT P RM+RPVMNLAA  +E+IGTFEQ++++IC+T +EAY G+T+H+
Sbjct: 594 KKNVPAQYPGLYLFTNPARMMRPVMNLAAKKVEYIGTFEQIYLNICVTPEEAYEGLTSHQ 653

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           ELSKT FLSNLA+LIPMPDCNQSPRNMYQCQMGKQTMGTPC  W+ Q   KLYRLQTPA+
Sbjct: 654 ELSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKLYRLQTPAT 713

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P FRPVHYD +D+D+F MGTNAIVAVISYTGYDMEDAMI+NK++++RGFAHG I+KS F+
Sbjct: 714 PLFRPVHYDEIDLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAHDRGFAHGMIYKSEFV 773

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L+                                            K YF R+P    L
Sbjct: 774 DLKD------------------------------------------QKSYFARNPDKSDL 791

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
            +KL  DGL  +G  ++E D  Y Y+   ++ YVT +Y GKE+  ++ V++         
Sbjct: 792 AEKLDVDGLPILGTMISEGDVYYCYYDADQSTYVTGKYHGKEDAYIDTVKLCGTLHNH-- 849

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
             P  A I +RI RN  VGDKFASRAGQKGICS KWP+EDLPFT++GL+PDIVFNPHGFP
Sbjct: 850 -IPRRACITFRIPRNANVGDKFASRAGQKGICSQKWPSEDLPFTETGLIPDIVFNPHGFP 908

Query: 944 SRMTIGFL 951
           SRMTI  +
Sbjct: 909 SRMTIAMM 916



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 41/56 (73%), Gaps = 5/56 (8%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            GYNYYGTE MYSG+DG  M A IFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 957  GYNYYGTERMYSGIDGREMTADIFFGIVHYQRLRHMVSDKWQVRSTGPIDVLTRQP 1012


>gi|350399850|ref|XP_003485659.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Bombus
           impatiens]
          Length = 1122

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/967 (47%), Positives = 628/967 (64%), Gaps = 108/967 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           L  P L N T  NFGKPP+KQN  L +LGAPHI SF++ML++GL  AV D   +   +  
Sbjct: 2   LIEPKLTN-TSTNFGKPPEKQNPLLQSLGAPHIDSFNYMLEDGLSEAVRDNPLVYIHLPN 60

Query: 101 K-TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           +  + L I   +I +P +P+G +G+  +K YPTE RQ    Y G   V + WS + K   
Sbjct: 61  EDKIALWIDDVSIHQPSIPSGAIGVKNHKIYPTECRQRGCTYKGKIIVKLGWSINNKVQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           T  +++G +PIM+KS RCHL  ++P  L+  GEH  EWGGYFI+ G E+++R+L+  RRN
Sbjct: 121 TLERDLGEIPIMIKSNRCHLSKMSPKDLVAHGEHEQEWGGYFIIKGLERIIRMLLMTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
           +PIAI+R+ WK RG+ FSDLG+ +RSV+ D +  NN LH+VT+GSA+ MFS+RK +    
Sbjct: 181 YPIAIRRSGWKARGIQFSDLGLLLRSVRDDNTTANNTLHYVTDGSAKLMFSYRKVLYYVP 240

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C+L M++++HE+G+++  + K + G++F
Sbjct: 241 LILMLKCLVDVSDIFIYSALTAGCEDDLYYKGCILNMLRAVHEQGLNSHEECKAYIGRMF 300

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           + KL        ++++CD+++ +CI  HL D  DKF  L+ MT KLF +      ++  D
Sbjct: 301 RIKLFELPYDATDIDVCDFIIKHCIAIHLHDPLDKFYLLAFMTKKLFALANNKCAVEGAD 360

Query: 364 SIMLQEIMTGGSLYLQLLKK-----------------EKSGTSAVLKESDIYAAFR-ASS 405
           ++M+QE + GG LYLQ+LK+                   +G    L   ++  A +  +S
Sbjct: 361 AVMMQECLLGGHLYLQVLKERLYSWLTGLKMGILKRARSAGNRYTLNVQEMLNAMKHGNS 420

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +E  M NFL+TGN+ +   + L LMQ +G  I+AENINRMRYMSHFRA+HRGS+FQEMR+
Sbjct: 421 LELQMENFLSTGNLRSP--TGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRT 478

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +E RQL  DAWGFICPVHTPDG PCGLLNHLT NC I+++   K+ A +P +L+ LGM+P
Sbjct: 479 TEARQLLPDAWGFICPVHTPDGAPCGLLNHLTMNCIITKHTNPKLKANVPIILMDLGMIP 538

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           L+  I    +++ +V+LDG+++G I D I + +  KLR+LKI G+++P ++EI  +  P+
Sbjct: 539 LS--IADNWKKSYIVILDGKLIGLIDDNIISRVTDKLRLLKIKGQEVPCTMEIALV--PK 594

Query: 586 KGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
           K +   YPGLYLFT P RM+RPVMNLAA  +E+IGTFEQ++++IC+T +EAY G+T+H+E
Sbjct: 595 KNVPAQYPGLYLFTNPARMMRPVMNLAAKKVEYIGTFEQIYLNICVTPEEAYEGLTSHQE 654

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           LSKT FLSNLA+LIPMPDCNQSPRNMYQCQMGKQTMGTPC  W+ Q   KLYRLQTPA+P
Sbjct: 655 LSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKLYRLQTPATP 714

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVHYD +++D+F MGTNAIVAVISYTGYDMEDAMI+NK++++RGFAHG I+KS F++
Sbjct: 715 LFRPVHYDEINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAHDRGFAHGLIYKSEFVD 774

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                            K YF R+P    L 
Sbjct: 775 LKD------------------------------------------QKSYFARNPDKPDLA 792

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
           +KL  DGL  +G  ++E D  Y Y+   ++ YVT +Y GKE+  V+ V++        S 
Sbjct: 793 EKLDVDGLPILGTMISEGDVYYCYYDADQSTYVTGKYHGKEDAYVDTVKLCGTLH---SH 849

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
            P  A I +RI RN  VGDKFASRAGQKGICS KWPAEDLPFT++GL+PDIVFNPHGFPS
Sbjct: 850 IPRRACITFRIPRNANVGDKFASRAGQKGICSQKWPAEDLPFTETGLIPDIVFNPHGFPS 909

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 910 RMTIAMM 916



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 41/56 (73%), Gaps = 5/56 (8%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            GYNYYGTE MYSG+DG  M A IFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 957  GYNYYGTERMYSGIDGREMTADIFFGIVHYQRLRHMVSDKWQVRSTGPIDVLTRQP 1012


>gi|380016936|ref|XP_003692423.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Apis
           florea]
          Length = 1122

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/967 (47%), Positives = 627/967 (64%), Gaps = 108/967 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           L  P L N T KNFGKPP+KQN  L  LGAPHI SF++ML++GL  AV+D   +   +  
Sbjct: 2   LIEPKLTN-TSKNFGKPPEKQNPLLQRLGAPHIDSFNYMLEDGLCKAVKDNPHVYIHLPN 60

Query: 101 K-TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           K  + L I   +I +P VP+G +G+  +K YPTE RQ    Y G   V + WS + K   
Sbjct: 61  KDKVALWIDDVSIDQPSVPSGIIGVKTHKIYPTECRQRGCSYKGKITVKLGWSINDKLQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
              +++G +PIM+KS +CHL  + P  L+  GEH  EWGGYF++ G E+++R+L+  RRN
Sbjct: 121 ILARDLGEIPIMIKSNKCHLNKMNPKDLVLHGEHEQEWGGYFVIKGLERIIRMLLMTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
           +PIAIKR+ WK RG+ FSDLG+++RSV+ D +  NN LH+VT+GSA+ MFSH+K +    
Sbjct: 181 YPIAIKRSGWKTRGIQFSDLGLFLRSVRDDNTTANNTLHYVTDGSAKLMFSHKKVLYYVP 240

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C+L M++++HE+G++   + K + G++F
Sbjct: 241 LILILKCLVDVSDIFIYNALTAGCESDLYYKGCILNMLRAVHEQGLNNHEECKAYIGKMF 300

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           + K        +++++CD+++ +CI  HL++  DKF  L+ MT KLF +      ++  D
Sbjct: 301 RIKFFELPEDASDIDVCDFIIKHCIAIHLNNPLDKFYLLAFMTKKLFALANNKCAVEGAD 360

Query: 364 SIMLQEIMTGGSLYLQLLKKE-----------------KSGTSAVLKESDIYAAFR-ASS 405
           S+M+QE + GG LYLQ+LK++                  +G    L   ++    +  +S
Sbjct: 361 SVMMQECLLGGHLYLQVLKEKLYSWLTNLKMGILKRARSAGNRYTLNVQEMLNVMKYGNS 420

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +ES M NFL+TGN+ +  ++ L LMQ +G  I+AENINRMRYMSHFRA+HRGS+FQEMR+
Sbjct: 421 LESQMENFLSTGNLRS--STGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRT 478

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +E RQL  DAWGFICPVHTPDG PCGLLNHLT NC I+++  +K+ A IP +L+ LGM+P
Sbjct: 479 TEARQLLPDAWGFICPVHTPDGAPCGLLNHLTMNCIITKHPDAKLKANIPIILMDLGMIP 538

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           L+  I    + + +VMLDG+++G I D I T +  KLR+LKI G+++P  +EI  +  P+
Sbjct: 539 LS--IADNWKNSYIVMLDGKLIGLIDDNIITRVTDKLRLLKIKGQEVPYMMEIALV--PK 594

Query: 586 KGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
           K +   YPGLYLFT P RM+RP+MNLAA N+E+IGTFEQ+++DIC+T +EAY G+T+H+E
Sbjct: 595 KTVPAQYPGLYLFTSPARMMRPIMNLAAKNVEYIGTFEQIYLDICVTPEEAYEGLTSHQE 654

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           LSKT FLSNLA+LIPMPD NQSPRNMYQCQM KQTMGTPC  W+ Q   KLYRLQTPA+P
Sbjct: 655 LSKTAFLSNLASLIPMPDYNQSPRNMYQCQMSKQTMGTPCHTWQLQSETKLYRLQTPATP 714

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVH+D +++D+F MGTNAIVAVISYTGYDMEDAMI+NK++Y+RGFAHG I+KS F++
Sbjct: 715 LFRPVHHDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFAHGLIYKSEFVD 774

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                            K YF R+P    L 
Sbjct: 775 LKD------------------------------------------QKSYFARNPDKSELV 792

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
           +KL  DGL   G  ++E D  Y Y+   ++ Y+T +Y GKE+  V+ V++          
Sbjct: 793 EKLDIDGLPLPGTIISEGDVYYCYYDADQSTYITGKYHGKEDAYVDTVKLCGTLHNH--- 849

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
            P  A I +RI RNP+VGDKFASRAGQKGICS KW AEDLPFT++GL+PDIVFNPHGFPS
Sbjct: 850 IPRRACITFRIPRNPSVGDKFASRAGQKGICSQKWSAEDLPFTETGLIPDIVFNPHGFPS 909

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 910 RMTIAMM 916



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/56 (67%), Positives = 41/56 (73%), Gaps = 5/56 (8%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            GYNYYGTE MYSG+DG  M A IFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 957  GYNYYGTERMYSGIDGREMTADIFFGIVHYQRLRHMVSDKWQVRSTGPIDVLTRQP 1012


>gi|307213328|gb|EFN88780.1| DNA-directed RNA polymerase I subunit RPA2 [Harpegnathos saltator]
          Length = 1119

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/967 (48%), Positives = 616/967 (63%), Gaps = 108/967 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-Y 99
           L  P L N T  NFGKPPDKQN  L  LG PHI SF++ML++GL   ++D  P+   +  
Sbjct: 2   LVEPKLTN-TSPNFGKPPDKQNRLLQNLGIPHIESFNYMLEDGLLEGLKDSPPVYLNLPN 60

Query: 100 GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
              + L +    I +P VP G +G+   K YPTE RQ  S Y G   V + WS +G    
Sbjct: 61  NDKIALWLDDVCIYQPTVPTGVIGVKNYKIYPTECRQRGSTYRGKITVKLGWSINGVQQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           T  K++G VPIM+KS RC+L  + P QL+E GEH  EWGGYFI+ G E++VR+L+  RRN
Sbjct: 121 TLEKDLGEVPIMVKSNRCYLNKMNPKQLVEHGEHEQEWGGYFIIKGLERIVRMLLMTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
           +PIA+KR+ WK+RG+ FSDLG+ +R+V+ D +AT NVLH+V +GSA+FMF +RK +    
Sbjct: 181 YPIAMKRSGWKSRGIQFSDLGILLRTVRDDNTATTNVLHYVMDGSAKFMFMYRKVLYYVP 240

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C+L M++++HEE +H+    K + G+IF
Sbjct: 241 LLLMLKCLIDITDVCIYNALIAGCEDDLYYKGCILNMLRAVHEENLHSHEQCKAYIGKIF 300

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           + K         +++ICDY++ +C+  HL+   DKF  L  MT KLF        ++  D
Sbjct: 301 RVKFFEAPPDATDIDICDYIIKHCVAIHLNKPADKFHLLVFMTKKLFTFANNKCAVEGAD 360

Query: 364 SIMLQEIMTGGSLYLQLLKKE-----------------KSGTSAVLKESDIYAAFR-ASS 405
            +M+QE + GG LYLQ++K++                  +G   +L   ++  A +  SS
Sbjct: 361 GVMMQECLLGGHLYLQVIKEKLISWLTSLKITILKRANSAGNRYILTVQEMLNASKFGSS 420

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           IES M NFL+TGN+ +  ++ L L Q++G  I+AENINRMRYMSHFRA+HRGS+FQEMR+
Sbjct: 421 IESQMENFLSTGNLKS--STGLGLTQSTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRT 478

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +E RQL  DAWGFICPVHTPDGTPCGLLNHLT NC ++++   K+ A IP +LV LGM+P
Sbjct: 479 TETRQLLPDAWGFICPVHTPDGTPCGLLNHLTMNCIVTKHPDCKLKAAIPRILVDLGMIP 538

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           L+  I +  + +  VMLDG+++G I D I   +  KLR LK+ GE++P +LEI  +  P+
Sbjct: 539 LS--IANNWKNSYTVMLDGKVIGLIEDNIINRVTCKLRELKVNGEEVPNTLEIALV--PK 594

Query: 586 KGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
           K +   YPGLYLFT   RM+RPV+NLA   IE IGTFEQV++DIC+  +EAY G+T+H+E
Sbjct: 595 KTIPAQYPGLYLFTNAARMMRPVINLATQKIELIGTFEQVYLDICVIPEEAYDGLTSHQE 654

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           LS T  LSNLA LIPMPDCNQSPRNMYQCQMGKQTMGTPC NW+ Q   KLYRLQTPA+P
Sbjct: 655 LSNTTILSNLACLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWQLQSQTKLYRLQTPATP 714

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
           FFRPVHYD ++MD+F MGTNAI+AVISYTGYDMEDAM++NK++Y+RGFA+G I+KS F++
Sbjct: 715 FFRPVHYDNINMDDFAMGTNAIIAVISYTGYDMEDAMVINKAAYDRGFAYGMIYKSEFVD 774

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L                                             + YF R+P    L 
Sbjct: 775 LND------------------------------------------QRSYFARNPDKTCLG 792

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
           + L  DGL  +G ++ E D  Y Y+   ++ YVT  Y  KE+  V+ V++  G     +V
Sbjct: 793 ETLDVDGLPMIGTRIKEGDIYYCYYDADQSTYVTGTYYSKEDAYVDNVKL-CGTLNSKNV 851

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I +RI RNP VGDKFASRAGQKGICS KWPAEDLPFT+SGL+PDI+FNPHGFPS
Sbjct: 852 RRAC--ITFRISRNPNVGDKFASRAGQKGICSQKWPAEDLPFTESGLIPDIIFNPHGFPS 909

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 910 RMTIAMM 916



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 42/57 (73%), Gaps = 5/57 (8%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            +GYNYYGTE MYSGVDG  M A IFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 956  AGYNYYGTERMYSGVDGREMNADIFFGIVHYQRLRHMVSDKWQVRSTGPVDLLTRQP 1012


>gi|328704219|ref|XP_001948731.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
           [Acyrthosiphon pisum]
          Length = 1121

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/962 (48%), Positives = 616/962 (64%), Gaps = 101/962 (10%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK-T 102
           P+LKNLT+ ++GKPPD QN+ L  LG PHI SF++M++EGL+LA+ D+ P+EF+  GK  
Sbjct: 4   PTLKNLTNVDYGKPPDSQNQILQELGTPHIDSFNYMIEEGLNLAISDLLPVEFDTKGKYR 63

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           +KL +++A I +P+VP G +G+  +  YP E RQ    YSG   + ++W  +        
Sbjct: 64  VKLTLLEATIHQPRVPTGSLGVKSHSIYPLECRQRHGTYSGRLEIKLSWRINDVEQMIID 123

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           +++G+VPIMLKSK CHL  ++P QL++ GEH DEWGGYFIV G E+LVRLL+  RRN P 
Sbjct: 124 RDIGQVPIMLKSKLCHLEKMSPKQLVKLGEHQDEWGGYFIVKGKERLVRLLLGTRRNFPT 183

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
           A++RN WKN+   FSD+G+ IR VK D +   N LH++TNG+A+ M   +K +       
Sbjct: 184 AVQRNTWKNKDQFFSDIGILIRCVKDDLTTVTNNLHYLTNGTAKLMIPIKKRVFYAPIFL 243

Query: 276 ---CL--------------------------LGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
              CL                          + MM+SLHE  IH Q D+K + G +F+ +
Sbjct: 244 IMRCLTNSSDEFIFRHIIKGHEDDLYFIRSVMEMMRSLHESNIHCQEDAKEYIGILFRPR 303

Query: 307 LQYDLRHL-NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
             Y+L       E+CD+ML + +L HL+  +DK   L  M  KLF V Q    ++  D I
Sbjct: 304 F-YELPEWKTNKEVCDHMLRSYVLIHLNTDFDKLKLLVFMLQKLFSVAQNKCLIEGADGI 362

Query: 366 MLQEIMTGGSLYLQLLKKEKSGTSAVLKES-------------DIYAAFRASS-IESAMT 411
           M+QE+M GG LYL++LK++      ++K +             D+  A R    IE AMT
Sbjct: 363 MMQELMLGGHLYLKILKEKLQTWLNLVKINLLKVDQGGQPSIGDMMTALRRCDLIEHAMT 422

Query: 412 NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQL 471
           NF ATGN+++   S L + Q  G  I+ ENI+RMRYM+HFRAVHRG+ F+ MR++EPR+L
Sbjct: 423 NFFATGNLNS--QSGLGMQQDKGLTILVENISRMRYMAHFRAVHRGAIFESMRTTEPRRL 480

Query: 472 RTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQ 531
             DAWGFICPVHTPDGTPCGLLNHLT +C +++ I  KVL  IP VLVSLGM   +   Q
Sbjct: 481 LPDAWGFICPVHTPDGTPCGLLNHLTKSCIVTKSISRKVLRDIPKVLVSLGMCEASYKPQ 540

Query: 532 SIPEQALM-VMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG-MG 589
            I    +  V+LDGRI+GY+ + +    + KLR LK+ G++IP++ EIV+L++ E+  +G
Sbjct: 541 DINIGFVYNVILDGRIIGYVPETLTALFIRKLRTLKVKGKQIPETTEIVWLQKKEENILG 600

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
            +PGL+LFTG  RM+RPV NL    IE IGTFEQV++DI I+  E  P IT++RE++KTD
Sbjct: 601 QFPGLFLFTGNARMMRPVFNLDLEQIELIGTFEQVYLDISISEDEIRPNITSYREVTKTD 660

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
           FLS+LA LIP+PD NQSPRNMYQCQMGKQTMGT C NW  Q   KLYR+Q+PASP FRPV
Sbjct: 661 FLSHLACLIPLPDYNQSPRNMYQCQMGKQTMGTACHNWHLQSETKLYRIQSPASPLFRPV 720

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
           HYD L MD+FPMGTNA++AVISYTGYDMEDAMI+NK + +RGFAHG IFK+  IE     
Sbjct: 721 HYDALSMDDFPMGTNAVIAVISYTGYDMEDAMIINKMALDRGFAHGSIFKTELIET---- 776

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
                                                  +   YF RDP  + L + LG 
Sbjct: 777 ---------------------------------------KPHTYFMRDPFKEDLPNFLGV 797

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
           DGL ++G KL++  P YSY+ E    ++  +Y   EE+ V+ VR    FT G  + PN A
Sbjct: 798 DGLPHIGLKLSKGTPYYSYFDEQIQGFIIAKYLSNEEVIVDSVRQCGDFTTGRKI-PNKA 856

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            I  R+QRNPTVGDKFASRAGQKGI S  WPAEDLPFT+SG+VPDIVFNPHGFPSRMTI 
Sbjct: 857 TITVRVQRNPTVGDKFASRAGQKGIFSKGWPAEDLPFTESGMVPDIVFNPHGFPSRMTIA 916

Query: 950 FL 951
            +
Sbjct: 917 MM 918



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 41/54 (75%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            GYNY+GTE MYSGVDG  M+A IFFGVVHYQRLRHMVSDKWQ +     D   K
Sbjct: 959  GYNYFGTEQMYSGVDGRAMKASIFFGVVHYQRLRHMVSDKWQVRSTGPVDAVTK 1012


>gi|403182650|gb|EJY57536.1| AAEL017010-PA [Aedes aegypti]
          Length = 1129

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/965 (48%), Positives = 619/965 (64%), Gaps = 110/965 (11%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT- 102
           P L NL  + F K P KQNE L  LG PH+ SF++ML+EG++  +  + P+EFE+  K  
Sbjct: 5   PVLTNLRPQ-FSKIPPKQNEILANLGTPHVDSFNYMLEEGIEDVIRRLEPVEFELPNKNR 63

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           ++L I   +I++P VP   +     + +P+E RQ    Y+G   + + W  +G+     T
Sbjct: 64  VRLRISDCSIAKPSVPLNQLNAKEKRIFPSECRQKNETYAGMCTIVIDWDVNGQPKPPIT 123

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           K++G++PIML+SK C+L  L+P +L+ER EH DEWGG+FIV G EKL+R++I  RRN+PI
Sbjct: 124 KDIGQLPIMLRSKACNLGGLSPQELVERMEHEDEWGGHFIVRGLEKLIRMIIMTRRNYPI 183

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
           A+ RN+WK+RG  FS  GV IR VK D+++TNNVLH++ NG+A+ MFS RKS+       
Sbjct: 184 ALNRNSWKDRGKEFSSTGVMIRCVKTDQTSTNNVLHYLVNGTAKLMFSIRKSLTFVPIVM 243

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ LHEEGIH Q + K + G +F++K
Sbjct: 244 LMKALSHYTDNEIYKRLIAGFEDDQYYKHCIQNMLRELHEEGIHNQVECKNYIGNVFRQK 303

Query: 307 LQYDLR--HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
           L Y+L   + NE E  DY+L +C+L HLDD  DKF  L  M  KLF   QG  + +  DS
Sbjct: 304 L-YNLPSWYTNE-ETADYLLKSCVLIHLDDDLDKFNLLVFMMQKLFTAAQGRCKPEGADS 361

Query: 365 IMLQEIMTGGSLYLQLLKKEK---------------SGTSAVLKESDIYAAFR-ASSIES 408
           +M+QE++ GG LY +LL++                 S   A L ++++  A +  ++ + 
Sbjct: 362 VMMQELLLGGHLYQKLLREHMISFLTGVKYNILKLCSDDDAHLTQNEMLMACKNTANFDR 421

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
           + +NFLATGN+   K S + LMQ SG VI+AENINRMRYMSHFRAVHRGS+F  MR++E 
Sbjct: 422 SFSNFLATGNMP--KASEMGLMQDSGLVIVAENINRMRYMSHFRAVHRGSFFVTMRTTEA 479

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTP 528
           RQL  DAWGFICPVHTPDGTPCGLLNH+T++C +S+    K ++ I + L+  GM P+  
Sbjct: 480 RQLLPDAWGFICPVHTPDGTPCGLLNHMTSDCMVSKSADRKKISNIEACLIRFGMTPINS 539

Query: 529 VIQSIPE--QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEK 586
           +         +  VML+GRI+G+I   IA   V KLR+LKI G++IP++ EI  +  P K
Sbjct: 540 IAFDTFNVGDSYSVMLEGRIIGHIPKNIAGVAVHKLRLLKIEGQEIPEATEIALV--PSK 597

Query: 587 GMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
             G YPGLY+F G  RM+RPVMNL A  IE IGTFEQV+MDICIT +E+YP +TTH ELS
Sbjct: 598 EGGQYPGLYIFVGVARMMRPVMNLYARKIELIGTFEQVYMDICITPEESYPNVTTHMELS 657

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
           KT FLSNLA LIPMPDCNQSPRNMYQCQMGKQTMGTPC NW+ Q V K YRLQTP +P F
Sbjct: 658 KTSFLSNLAKLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWQQQCVSKFYRLQTPGTPLF 717

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           RPVH+D +D+DN+ MGTNAIVAV+SYTGYDMEDAMI+NKS++ERGFAHG I+K+ FIEL+
Sbjct: 718 RPVHHDNIDLDNYAMGTNAIVAVVSYTGYDMEDAMIINKSAFERGFAHGNIYKNEFIELK 777

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                                                         +F RDP N+ L   
Sbjct: 778 G-------------------------------------------DSFFARDPRNENLRPF 794

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           L  DGL +  AKL+ + P+Y Y+  +++ Y   ++ G E+  V+ V++    +   S  P
Sbjct: 795 LDNDGLPFKSAKLSLKTPLYCYFDTNDHSYHIVKFHGHEDAIVDNVKLCGSTS---SSAP 851

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
             A I +RI RNP VGDKFASRAGQKGICS KWPA DLPFT+SG++PDI+FNPHGFPSRM
Sbjct: 852 KRAVITFRIVRNPNVGDKFASRAGQKGICSQKWPAVDLPFTESGMIPDIIFNPHGFPSRM 911

Query: 947 TIGFL 951
           TI  +
Sbjct: 912 TIAMM 916



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 40/45 (88%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            SGYNY+GTE MYSGVDG  M+A IFFG+VHYQRLRHMVSDKWQ +
Sbjct: 956  SGYNYHGTERMYSGVDGREMKADIFFGIVHYQRLRHMVSDKWQVR 1000


>gi|170032393|ref|XP_001844066.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Culex
           quinquefasciatus]
 gi|167872352|gb|EDS35735.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Culex
           quinquefasciatus]
          Length = 1129

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/963 (48%), Positives = 611/963 (63%), Gaps = 106/963 (11%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT- 102
           P L NL  + F + P +QN+ L  LGAPHI SFD++L EGL   +  + P+EFE+  K  
Sbjct: 5   PVLTNLKPQ-FREIPKEQNKVLANLGAPHIESFDYVLREGLADVIRQLDPVEFELPNKDR 63

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           ++L I   +I+ P VP   + +   + +P+E RQ    Y+G   +TV W  +G+     T
Sbjct: 64  VRLRIGDCSIARPVVPLSQLNVREKRVFPSECRQKNETYAGMCTITVDWEVNGQPRPAIT 123

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           +++G +P+ML+S+ C+L  ++PA+L+ERGEH DEWGG+F+V G EKL+R+LI  RRN+PI
Sbjct: 124 RDIGALPVMLRSRACNLGGMSPAELVERGEHEDEWGGHFVVRGMEKLIRMLIMTRRNYPI 183

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
            + RN+W++RG  FS  G+ IR V+ D+++TNNVLH++ NG+A+ MFS R+S+       
Sbjct: 184 VLSRNSWRDRGKEFSSTGIMIRCVRTDQTSTNNVLHYLVNGTAKLMFSIRRSLTFIPIMM 243

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ LHEEGIH Q + K + G++F+ K
Sbjct: 244 LLKALSDYTDNEIYKRLIVGYEEDQYYKHCIQNMLRELHEEGIHNQVECKDYMGKVFRTK 303

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
           L Y      + +  D++L  C+L HLDD  DKF  L  M  KLF   QG  +L+S DS M
Sbjct: 304 LYYLPAWYTDAQRTDHLLKTCVLIHLDDDLDKFNLLVFMMQKLFTAAQGRCKLESVDSTM 363

Query: 367 LQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESD-IYAAFRASSIESAM 410
           +QE++ GG LY +LL+               K  S   A L +++ + A   AS+ + A 
Sbjct: 364 MQELLLGGHLYQKLLREHFLTFLNGMKYNMLKLCSDADAHLGQNEAVMACKNASNFDRAF 423

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
           +NF ATGN+   K S + LMQ SG VI+AENINRMRYMSHFRA+HRGS+F  MR++E RQ
Sbjct: 424 SNFFATGNLQ--KASEMGLMQDSGLVIIAENINRMRYMSHFRAIHRGSFFVTMRTTEARQ 481

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L  DAWGFICPVHTPDGTPCGLLNHLTTNC++S       +  I   L+  GM P   V 
Sbjct: 482 LLPDAWGFICPVHTPDGTPCGLLNHLTTNCRVSNSPDPGKVKNIEKYLIQYGMTPANSVA 541

Query: 531 QSIP--EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGM 588
            S     +   VM++GRI G I   +    V +LRMLKI GE+IP++ EIV++  P K  
Sbjct: 542 LSGGGVGEGYTVMVEGRIAGRIPKAVVGQAVQQLRMLKIGGEEIPEATEIVFI--PSKEG 599

Query: 589 GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKT 648
           G YPGLY+F G  RM+RPV+NL A  +E IGTFEQV+MDICIT +EAYP +TTH+ELSKT
Sbjct: 600 GQYPGLYIFVGAARMMRPVINLDANKVELIGTFEQVYMDICITAREAYPKVTTHKELSKT 659

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
            FLSNLA LIPMPDCNQSPRNMYQCQMGKQTMGTPC NW+ Q + K YRLQTPA+P FRP
Sbjct: 660 SFLSNLAMLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWQLQCIAKFYRLQTPATPLFRP 719

Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
           VH+D +D+DN+ MGTNAIVAVISYTGYDMEDAMI+NKS++ERGFAHG ++K+  IEL+  
Sbjct: 720 VHHDNIDLDNYAMGTNAIVAVISYTGYDMEDAMIINKSAFERGFAHGTVYKNELIELKG- 778

Query: 769 YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
                                                       +F RDP ++ L+  L 
Sbjct: 779 ------------------------------------------DSFFARDPRDERLKQFLD 796

Query: 829 PDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            DGL Y  A L  R+PMY Y+  +++ Y   ++   E+  V+ +++  G T   +  P  
Sbjct: 797 NDGLPYRSALLQHRNPMYCYFDTNDHTYHVVKFDHHEDGIVDNIKL-CGTTSASA--PKK 853

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
           A I YRI RNP VGDKFASRAGQKGICS KWPA DLPFT+SG++PDI+FNPHGFPSRMTI
Sbjct: 854 AVITYRIVRNPNVGDKFASRAGQKGICSQKWPAVDLPFTESGMIPDIIFNPHGFPSRMTI 913

Query: 949 GFL 951
             +
Sbjct: 914 AMM 916



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 40/45 (88%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            SGYNY+GTE MYSGVDG  M+A IFFGVVHYQRLRHMVSDKWQ +
Sbjct: 956  SGYNYFGTERMYSGVDGREMKADIFFGVVHYQRLRHMVSDKWQVR 1000


>gi|322801624|gb|EFZ22265.1| hypothetical protein SINV_10883 [Solenopsis invicta]
          Length = 1120

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/967 (46%), Positives = 602/967 (62%), Gaps = 108/967 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-Y 99
           L  P L N T  NFG+ PD QNE L +LG PHI SF++ML++GL   ++D  P+   +  
Sbjct: 2   LVEPKLTN-TSPNFGRSPDTQNEILQSLGTPHIESFNYMLEDGLYQNLKDNTPVYVTLPN 60

Query: 100 GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
              + L +    I +P  P   +G+   K YP+E RQ    Y G     + WS +GK   
Sbjct: 61  SDKIVLWLDDVHIYKPAAPTNTIGLKSYKIYPSECRQRGVTYKGKIIARIGWSINGKEQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
              K++G VPIMLKS RCHL  ++P +L+  GEH  EWGGYFI+ G E+LVR+LI  RRN
Sbjct: 121 ILEKDLGEVPIMLKSNRCHLNKMSPKELVAHGEHEQEWGGYFIIKGLERLVRMLIMTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS----- 274
           +PIA+KR  WK RG  FSDLG+ +RSV+ D S  NN LH+VT+GSA+F F+++K+     
Sbjct: 181 YPIAVKRPIWKGRGEQFSDLGILLRSVRDDNSTVNNTLHYVTDGSAKFAFAYKKATYYVP 240

Query: 275 -------------MCL------------------LGMMQSLHEEGIHTQHDSKVFFGQIF 303
                        +C+                  + M++++HEEG+H     K + G++F
Sbjct: 241 LILMLKCLKDVTDLCIYKALLAGCEDDLYYNNSIMNMLRAVHEEGLHWHEQCKAYIGKMF 300

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           + K         ++++CDY++ NC+  HLD+  DKF  L  MT KLF        ++  D
Sbjct: 301 RVKFSELPEDATDIDVCDYIVKNCVAIHLDEPADKFDLLVFMTKKLFAFSNNKCAVEGVD 360

Query: 364 SIMLQEIMTGGSLYLQ----------------LLKKEKS-GTSAVLKESDIYAAFR-ASS 405
           S+M+QE + GG LYLQ                +LK+ KS G    L   ++    +   +
Sbjct: 361 SVMMQECLMGGHLYLQVLNEKLCSWLVGVKHHILKRAKSAGNRYTLSVQEMLNVTKLRCN 420

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           I++ M  FL+TG++ +  +S L L Q+SG  I+ ENINRMRYMSHFRA+HRG++FQEMR+
Sbjct: 421 IDAQMEYFLSTGSIRS--SSGLGLTQSSGLTIVVENINRMRYMSHFRAIHRGAFFQEMRT 478

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +E RQL  DAWGFICP+HTPDG PCGLLNHLT NC ++++  +K+ A IP+VLV LGM P
Sbjct: 479 TEARQLLPDAWGFICPIHTPDGAPCGLLNHLTMNCIVTKHPNAKLKAAIPTVLVDLGMTP 538

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           L   I    + +  VMLDG+++G I D+I   +V +LR+ KI G++IP +LEI  +  P+
Sbjct: 539 LP--IADDWKNSYNVMLDGKLIGLIEDKIINKVVYELRLRKIKGKEIPSTLEIALV--PK 594

Query: 586 KGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
           K +   YPGL+LFT   RM+RPV+NLAA  IE+IGTFEQ+++DIC+  +E Y G+TTH+E
Sbjct: 595 KNVPAQYPGLFLFTSAARMMRPVINLAAQKIEYIGTFEQIYLDICVISQEVYEGMTTHQE 654

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +S+T   SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC NW+ Q   KLYRLQTPA+P
Sbjct: 655 ISQTTIFSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWQQQSQTKLYRLQTPATP 714

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVHYD ++MD+F MGTNAI+AVISYTGYDMEDAMI+NKSSYERGF HG I+KS F++
Sbjct: 715 LFRPVHYDNINMDDFAMGTNAIIAVISYTGYDMEDAMIINKSSYERGFGHGSIYKSEFVD 774

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L                                       +DK   K YF RDPA   L 
Sbjct: 775 L---------------------------------------NDK---KSYFARDPAKPDLA 792

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             +  DGL  +G  + E D  YSY+     +YV  +Y   E   V+ V++       G+ 
Sbjct: 793 KTIDVDGLPMIGIAIKEGDAYYSYYDADSAQYVIGKYKSAETAYVDNVKLCGSL---GNH 849

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
               A I +RI RNP VGDKFASRAGQKGI S  +P EDLPFT++G+VPDI+FNPHGFPS
Sbjct: 850 DIRRACITFRIPRNPIVGDKFASRAGQKGILSRLYPIEDLPFTETGMVPDIIFNPHGFPS 909

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 910 RMTIAMM 916



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 40/56 (71%), Gaps = 5/56 (8%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            GYNYYGTE MYSG+ G  + A IFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 957  GYNYYGTERMYSGIYGCELTANIFFGIVHYQRLRHMVSDKWQVRSTGPIDQLTRQP 1012


>gi|242003016|ref|XP_002422580.1| DNA-directed RNA polymerase I 135 kDa polypeptide, putative
           [Pediculus humanus corporis]
 gi|212505370|gb|EEB09842.1| DNA-directed RNA polymerase I 135 kDa polypeptide, putative
           [Pediculus humanus corporis]
          Length = 1114

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/964 (46%), Positives = 586/964 (60%), Gaps = 107/964 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
            S PSLK LT  ++G P D QNEFL TLG PH+ SF+ ++D+GL+L  +++ PI F +  
Sbjct: 14  FSKPSLKYLT-HSYGVPLDIQNEFLQTLGKPHVDSFNLLIDKGLNLICKNLIPIHFSVGS 72

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
               + I    +  P +P G   +   K +P E RQ  S YSG     + WS +G     
Sbjct: 73  DRYTVQIENLRLLYPVMPDGSFALKTQKIFPCECRQRASTYSGNLFGKITWSVNGVNQHP 132

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
             K+ G++PIM+KS RCHL+NLTP +L+E+ EH DEWGGYFI+ GHEKL+R+LI  RRN+
Sbjct: 133 IEKDFGKIPIMIKSNRCHLKNLTPRELVEKNEHEDEWGGYFILKGHEKLIRMLIATRRNY 192

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM----- 275
           PIA+ R  WK RG  FS+ G+ +R V  DE++TNNVLHFVT+G+ + M S+ +S+     
Sbjct: 193 PIALSRRTWKQRGASFSEKGILLRCVSEDETSTNNVLHFVTDGTVKVMLSYGRSLYFIPL 252

Query: 276 -------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
                                          C+  M+  +H +GI T  ++K F G+ F+
Sbjct: 253 CLILKSLINVSDLYVFKRLTEGRDDDFYFKSCIKTMLYDVHVQGIDTHEEAKCFIGKTFR 312

Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
            K         + +ICD ++  C+  HL+D  DKF  L  MT KLF  VQG    ++ DS
Sbjct: 313 LKFPDQSPWFTDAQICDLIMEKCLAIHLNDNKDKFNLLIFMTQKLFAFVQGQCCEENADS 372

Query: 365 IMLQEIMTGGSLYLQLLKKEKSG--------TSAVLKESDI-------YAAF--RASSIE 407
           +M+QEI+TGGS+Y Q+LK    G         S  L E  +        A+F  RA  IE
Sbjct: 373 LMVQEILTGGSIYQQVLKDRLQGFLNNLRLVASKKLSEGKLNSISQIQMASFCKRAGGIE 432

Query: 408 SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSE 467
            AM NF+ATGN     NS   L Q  G VIMAENINRMRYMSHF+A+HRG+YF  MR+++
Sbjct: 433 KAMNNFVATGNC---HNSLSGLPQDKGLVIMAENINRMRYMSHFKAIHRGAYFTTMRTTD 489

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
            RQL  +AWGFICPVHTPDG+PCGLLNHL+ +C ++     ++L  +  VL  LG++PL 
Sbjct: 490 GRQLLPEAWGFICPVHTPDGSPCGLLNHLSKDCIVTNVPDYEILKNLSCVLTDLGVMPLE 549

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
            V +        V+LDG+++GY+ D  A +LV  LR+LKI G  +P +LEIV + + +  
Sbjct: 550 IVEKK--NNYYDVLLDGKLIGYVADTNAQNLVQSLRVLKIEGNVVPNTLEIVLVPKKD-S 606

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
              YPG++LFTGP R++RPV+NLA    E IGTFEQV+++IC+ + EAY G+TTH+ELS 
Sbjct: 607 ESQYPGIFLFTGPNRLMRPVLNLALNKTELIGTFEQVYLEICLKLNEAYEGLTTHKELSH 666

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
           T FLSNLA LIPMPDCNQSPRNMYQCQMGKQ+MGTP   W  Q   KLYRL  P+SP FR
Sbjct: 667 TTFLSNLACLIPMPDCNQSPRNMYQCQMGKQSMGTPVHTWDIQAETKLYRLLLPSSPLFR 726

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P HYD + +D+FPMG NA+VAVISYTGYDMEDAMI+NKSS+ERGF HG I KS F  L  
Sbjct: 727 PGHYDAIKLDDFPMGVNAVVAVISYTGYDMEDAMIINKSSFERGFGHGTILKSEFFHL-- 784

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                                                        YF RDP+   L  KL
Sbjct: 785 -----------------------------------------NPDSYFERDPSKAELISKL 803

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL + G  + E DP+  Y+    ++YV  ++ GKE   V+ VR+  G T    +   
Sbjct: 804 DDDGLPFPGTLVEENDPICCYFNGELSKYVVEKFHGKEIAYVDNVRLCCGET----LNSA 859

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
              I +R+ RNP VGDKFASRAGQKGICS  WP EDLPFTDSGLVPD+VFNPHGFPSRMT
Sbjct: 860 SVCITFRVPRNPVVGDKFASRAGQKGICSQMWPCEDLPFTDSGLVPDVVFNPHGFPSRMT 919

Query: 948 IGFL 951
           I  +
Sbjct: 920 IAMM 923



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 38/45 (84%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNYYGTE MYSGVDG  M A IFFG+V+YQRLRHMV DKWQ +
Sbjct: 963  AGYNYYGTEKMYSGVDGREMNAAIFFGIVYYQRLRHMVLDKWQVR 1007


>gi|357622980|gb|EHJ74315.1| hypothetical protein KGM_02320 [Danaus plexippus]
          Length = 1130

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/972 (45%), Positives = 609/972 (62%), Gaps = 111/972 (11%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +  L  PSLK  ++ ++ +PP   N +L  LG PHI SF++M+ +GL  A++D+ P+EF+
Sbjct: 4   KKILHEPSLKYTSNPDYRRPPKTANPYLQCLGTPHIDSFNYMIKDGLKAAIDDLIPVEFD 63

Query: 98  I-YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
           +  G+ +K+ I +AA ++P VP   VG+      PTE RQ  + Y G F V ++++ DGK
Sbjct: 64  VPSGERIKITIDEAAFAKPSVPMEAVGVKNQIVLPTECRQRAATYKGDFKVRLSFTVDGK 123

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
              +  + +G +PIMLKSK CHL +L+P +L+++ EH DEWGGYFI+ GHE+L R+L+  
Sbjct: 124 TI-SMDRSLGSLPIMLKSKVCHLADLSPEELVKKNEHADEWGGYFIIKGHERLARMLLVT 182

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
           RRN+P+AIKR+ W+ RG LF+D GV +R VK D+++TNNVLHF+ NG+ + MFSHRK M 
Sbjct: 183 RRNYPVAIKRSGWRMRGNLFTDYGVLMRCVKPDQTSTNNVLHFLQNGTCKLMFSHRKVMY 242

Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
                                              C+  M++ LHE+ +HT  + + + G
Sbjct: 243 YAPLVLILKCLVDWPDHYIYRLLLHGKKNDLYYVNCVQNMLRELHEQDLHTSVECRSYMG 302

Query: 301 QIFKEKLQYDLR-HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
           ++F+ +L  DL     +++  +++L  CI+ HL+DY DKF  L  M  KLF +VQ   ++
Sbjct: 303 RMFRARL--DLPPDATDLDAANFLLVRCIMIHLNDYKDKFYGLVFMNQKLFDLVQNKCKV 360

Query: 360 DSEDSIMLQEIMTGGSLYLQLLKK--------------EKSGTSAV-LKESDIYAAFR-A 403
           +  D++M+QE+  GG LYLQ+LK+              +KS TS + L   ++    R A
Sbjct: 361 EGADAVMVQELQVGGHLYLQVLKERLQTLLYVLKANIIKKSKTSRLSLTSKELQQIIRSA 420

Query: 404 SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEM 463
             +E  M  FLATGN  +   + + L Q  G  I+AEN+NRMRYMSHF+A+HRGS+F EM
Sbjct: 421 GGLEQKMETFLATGNAPS---NNVNLAQYKGLTIVAENLNRMRYMSHFKAIHRGSFFMEM 477

Query: 464 RSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGM 523
           R++E RQL  DAWGF+CPVHTPDG PCGLLNHLT + Q+++    K ++ +P+VL   GM
Sbjct: 478 RTTEARQLLPDAWGFVCPVHTPDGAPCGLLNHLTASAQVTQQPDPKQVSSLPAVLEKCGM 537

Query: 524 LPLTPVIQSIPEQALM---VMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVY 580
            P++ V  +     +    V +DGR+VGY  +  A   V  LR LK+ GE +P S EIV 
Sbjct: 538 DPISSVAHTPLTHDVYKYPVFIDGRLVGYFNEDTALKSVSYLRTLKVKGEDVPISTEIVM 597

Query: 581 LKRPEKGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
           +  P+K +   Y G++LFT   RM+RPV+NL+ G +E +GT EQ+++DI +   E   G 
Sbjct: 598 V--PKKQIPAQYAGVFLFTSEARMMRPVINLSTGQLELVGTMEQLYLDIAVAQTEIIKGK 655

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
           TTH ELSK+ F+SNLA L+PMPDCNQSPRNMYQCQMGKQTMGTP   W      KLYRLQ
Sbjct: 656 TTHLELSKSAFMSNLAQLVPMPDCNQSPRNMYQCQMGKQTMGTPIHTWSTNAETKLYRLQ 715

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           T A+P FRPVH+D L +D++P GTNAI+AVISYTGYDMEDAMI+NKSSYERGFA G ++K
Sbjct: 716 TGATPLFRPVHHDNLSLDDYPSGTNAILAVISYTGYDMEDAMIINKSSYERGFAAGSVYK 775

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
           S F EL+S                                          +  YF RDP 
Sbjct: 776 SNFAELKS------------------------------------------SSSYFCRDPT 793

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
              L   +  DGL  VGA++   DP Y ++    +++V  +Y GKEE+ V+ VR+   F+
Sbjct: 794 RTDLAAYMDEDGLPAVGARIQPEDPFYCHYDSDSSKFVVTKYHGKEEVVVDSVRLCGEFS 853

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
              S  P  A I  R+QRNPTVGDKFASRAGQKGICS KWPAEDLPFT+SGL+PD++FNP
Sbjct: 854 ---SKAPKKACIMVRVQRNPTVGDKFASRAGQKGICSQKWPAEDLPFTESGLIPDVLFNP 910

Query: 940 HGFPSRMTIGFL 951
           HGFPSRMTI  +
Sbjct: 911 HGFPSRMTIAMM 922



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 66/129 (51%), Gaps = 19/129 (14%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDPAN-- 820
            GYNYYGTE +YSGVDG  MQA IF G+VHYQRLRHMVSDKWQ +     D   R P    
Sbjct: 965  GYNYYGTERIYSGVDGREMQADIFCGLVHYQRLRHMVSDKWQVRTTGAVDALTRQPVKGR 1024

Query: 821  ----KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
                     ++  D L+  GA    +D ++    +SE   + C        C  ++   S
Sbjct: 1025 RRGGGVRLGEMERDALLAHGATFLLQDRLFHCSDKSEA--IIC------SKCGTLLGPIS 1076

Query: 877  GFTEGGSVT 885
            G TEG   T
Sbjct: 1077 GNTEGSKDT 1085


>gi|158288277|ref|XP_310152.4| AGAP009539-PA [Anopheles gambiae str. PEST]
 gi|157019172|gb|EAA05843.4| AGAP009539-PA [Anopheles gambiae str. PEST]
          Length = 1152

 Score =  867 bits (2240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/977 (45%), Positives = 603/977 (61%), Gaps = 118/977 (12%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY-GKT 102
           P L NL  + F + P KQNE L  LG PHI SF++MLDEG++  +  + P+ FE+  G  
Sbjct: 12  PELTNLRPE-FKEIPKKQNEILANLGRPHIDSFNYMLDEGIEDVLSRLVPVCFEMANGSR 70

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           +KL I   +I+ P VP   V +   + +P+E RQ    Y+G   +T+ W  DG      T
Sbjct: 71  IKLRITDISIAPPTVPMMLVEVAEKRVFPSECRQKSDTYAGMCTITLNWELDGMPQSPLT 130

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           +E+GR+PIML+S  C+L N TP +L+ RGEH DEWGGYF+V G+EKL+R+LI+ RRN+PI
Sbjct: 131 REMGRIPIMLRSNACNLANATPEELVARGEHEDEWGGYFVVRGNEKLIRMLISTRRNYPI 190

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
           A+ RN W++RG  FS  GV+IR V+ D+ +T NVLH++TNG+A+ M S  +++       
Sbjct: 191 AVNRNTWRDRGKDFSATGVFIRCVREDQYSTRNVLHYLTNGTAKLMISVSRALSFIPVMM 250

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C++ M++ LH E +H+  + + + G + + +
Sbjct: 251 ILKALGDRSDNEIYKKLTACDESDQYYKRCIMAMLRDLHAENLHSSQECRSYMGMLLRRR 310

Query: 307 LQYDLR---HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           L  D+      ++ +   ++L +C+L HLD   DKF  L HM  KL+ VVQG   ++S D
Sbjct: 311 LM-DINLPAWYSDEQAGHFLLQHCVLIHLDSVEDKFNLLVHMVHKLYAVVQGRHAVESLD 369

Query: 364 SIMLQEIMTGGSLY----------------LQLLKKEKSGTSAVLKESDIYAAFR-ASSI 406
             M+QEI+ GG +Y                + L+K     TS ++   ++  A +  +  
Sbjct: 370 GTMMQEILLGGHIYQGLLREMCLSTMQYVRINLMKLCPDRTSPMVTTHELAQALKNVAGF 429

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
           +   T FLATGN++  K + + LMQ++G VI+AENINRMRYMSHFRAVHRGSYF  MR++
Sbjct: 430 QHPFTMFLATGNLA--KATEMGLMQSTGLVIIAENINRMRYMSHFRAVHRGSYFLTMRTT 487

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
           E RQL  DAWGFICPVHTPDG PCGLLNH+T++C +S     +++A IP+ LVSLGM P 
Sbjct: 488 EARQLLPDAWGFICPVHTPDGEPCGLLNHMTSDCTVSVTQDPELVANIPATLVSLGMQPF 547

Query: 527 TPVIQSIP----EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLK 582
                S      +   +VML+G+++G +    A+ +V KLR+LKI G+ IP   EI ++ 
Sbjct: 548 GGDAGSFGTLSHDDGYVVMLEGKMLGMLARATASQVVQKLRLLKIEGKTIPNQTEIAFV- 606

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
            P +  G YPGL+LF GP RM+RPV NL  G  E IG+FEQV+MDIC+T +EAYP +TTH
Sbjct: 607 -PAREGGQYPGLFLFVGPARMMRPVKNLLCGKTELIGSFEQVYMDICVTPEEAYPQLTTH 665

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            EL+KT F+SNLA LIPMPDCNQSPRNMYQCQMGKQTMGTPC NW  Q + K+YRLQTPA
Sbjct: 666 AELAKTSFMSNLAQLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWDKQCIAKMYRLQTPA 725

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
           +P FRPVH+D + +DN+ MGTNAIVAVISYTGYDMEDAMI+NK+++ERGFA G I+K  +
Sbjct: 726 TPLFRPVHHDNIALDNYAMGTNAIVAVISYTGYDMEDAMIINKAAFERGFAAGNIYKHEY 785

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
           +EL                                               +F R+P +  
Sbjct: 786 VELTG-------------------------------------------DSFFARNPKDAT 802

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
           L   L  DGL + GA+L +  P+Y Y+  +++ Y    Y G EE  V+ V++ +   + G
Sbjct: 803 LNPFLDNDGLPFKGAQLTKGTPLYCYFDVNDHTYHVVSYQGYEEAIVDNVKLGAPLQDAG 862

Query: 883 --------SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
                   ++      + YR+ RNP+VGDKFASRAGQKGICS  WPA DLPFT+SG++PD
Sbjct: 863 RGIGRGGMAIVTKQLILTYRVPRNPSVGDKFASRAGQKGICSQHWPAIDLPFTESGMIPD 922

Query: 935 IVFNPHGFPSRMTIGFL 951
           I+FNPHGFPSRMTI  +
Sbjct: 923 IIFNPHGFPSRMTIAMM 939



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 40/46 (86%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +SGY+YYGTE MYSGVDG  M+  IFFGVVHYQRLRHMVSDKWQ +
Sbjct: 978  QSGYDYYGTERMYSGVDGREMKVDIFFGVVHYQRLRHMVSDKWQVR 1023


>gi|307168561|gb|EFN61619.1| DNA-directed RNA polymerase I subunit RPA2 [Camponotus floridanus]
          Length = 1075

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/933 (47%), Positives = 586/933 (62%), Gaps = 86/933 (9%)

Query: 39  NTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI 98
           + L  P L N T  +FGKPP+KQN  L +LGAPHI SF++ML++GL   +++ +P+   +
Sbjct: 5   DILLEPKLTN-TSPDFGKPPEKQNRLLQSLGAPHIDSFNYMLEDGLQ-GIKNDSPVYLTL 62

Query: 99  -YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  + L +    I +P VP+G +G+   K YPTE+RQ  + Y G   V + WS +GK 
Sbjct: 63  PNGDKVVLWLDDVQIHKPTVPSGTIGVKNYKVYPTESRQRGTTYKGKIIVKLKWSINGKE 122

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                 ++G +PIMLKS RCHL  ++P +L+  GEH  EWGGYFIV G E+L+R+LI  R
Sbjct: 123 QEALESDLGGIPIMLKSNRCHLNKMSPKELVAHGEHEQEWGGYFIVRGIERLIRMLIMTR 182

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN+PIAIKR  WK RG  FSDL V    + +   A     H+  N              +
Sbjct: 183 RNYPIAIKRPIWKTRGEQFSDLDVTDVYIYKTLIAGCEDDHYYNNS-------------V 229

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWD 337
           + M+++LHEEG+H     K + G+IFK K         ++++C+Y++  C+  HLD+  D
Sbjct: 230 MNMLRNLHEEGLHWHEQCKAYVGKIFKVKFSELPADATDIDVCNYIIKYCVAIHLDEPID 289

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------- 384
           KF  L  MT KLF +      ++  DS+M+QE + GG LYLQ+LK++             
Sbjct: 290 KFHLLVFMTKKLFTLAGNKCAVEGVDSVMMQECLLGGHLYLQVLKEKLWSWLTNVKIHIL 349

Query: 385 KSGTSA------VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
           K   SA       L+E      FR S+I++ M  FLAT   S   +S++ LMQ SG  ++
Sbjct: 350 KLAKSAGNKYILTLQEMLKITKFR-SNIDAQMEYFLAT--GSIRSSSSIGLMQNSGLTVV 406

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
            ENINRMRYMSHFRA+HRG++FQ MR++E R+L  DAWGFICP+HTPDG PCGLLNHLT 
Sbjct: 407 VENINRMRYMSHFRAIHRGAFFQGMRTTEVRRLLPDAWGFICPIHTPDGAPCGLLNHLTM 466

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
           NC ++++    + A IP +L+ LGM+PL+  I    E +  VMLDG+++G I ++I   +
Sbjct: 467 NCIVTKHPDPNLKAAIPGILIELGMIPLS--IADNWENSYTVMLDGKVIGLIENKIINKV 524

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWI 618
           V +LR+LKI G++IP +LEI  + +  K    YPGL+LFT   RM+RPV+NLA   IE I
Sbjct: 525 VYRLRLLKIKGQEIPSTLEIALVPK-RKVPSQYPGLFLFTNATRMMRPVINLAVQQIELI 583

Query: 619 GTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           GTFEQ++MDIC+  +EAYPG+TTH+E+S+T   SNLA LIP+PDCNQSPRNMYQCQMGKQ
Sbjct: 584 GTFEQIYMDICVLPEEAYPGLTTHQEVSQTTIFSNLAKLIPLPDCNQSPRNMYQCQMGKQ 643

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
           TMGTPC NW+ Q   KLYRLQTPA+P FRPVHYD ++MD++ MGTNAI+AVISYTGYDME
Sbjct: 644 TMGTPCYNWQQQSQTKLYRLQTPAAPLFRPVHYDNINMDDYAMGTNAIIAVISYTGYDME 703

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DAM++NK+SYERGF +G ++KS F++L+                                
Sbjct: 704 DAMVINKASYERGFGYGTVYKSEFVDLK-------------------------------- 731

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
                  DK   K YF  DP    L   L  DGL  +GA + E DP Y ++      YV 
Sbjct: 732 -------DK---KSYFACDPDKPELGKTLDIDGLPIIGASIKEGDPYYCFYDADNANYVV 781

Query: 859 CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
            RY   E   ++ V++   F    +  P  A I +RI RNP VGDKFASRAGQKGI S  
Sbjct: 782 GRYKSTENTYIDNVKLCGSFN---TQDPRRACITFRIPRNPIVGDKFASRAGQKGILSRL 838

Query: 919 WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +PAEDLPFT++G+VPDI+FNPHGFPSRMTI  +
Sbjct: 839 YPAEDLPFTETGMVPDIIFNPHGFPSRMTIAMM 871



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 41/56 (73%), Gaps = 5/56 (8%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
           GYNYYGTE MYSG+ G  M+A IFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 912 GYNYYGTERMYSGIYGCEMEASIFFGMVHYQRLRHMVSDKWQVRSTGPIDQLTRQP 967


>gi|189240038|ref|XP_972683.2| PREDICTED: similar to RNA polymerase I 135kD subunit CG4033-PA
           [Tribolium castaneum]
          Length = 993

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/833 (50%), Positives = 542/833 (65%), Gaps = 101/833 (12%)

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
           M+KS +CHL  ++PA+L++ GEH  EWGGYF+V GHE+LVR+L+  RRN+PIAIKR+ WK
Sbjct: 1   MIKSNKCHLSAMSPAELVKHGEHEQEWGGYFVVKGHERLVRMLLMTRRNYPIAIKRSGWK 60

Query: 231 NRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM--------------- 275
            RG +FSD G+ +R V+ D++AT NVLHFVT+G+A+ MFS++K +               
Sbjct: 61  ARGSIFSDCGISMRCVREDQTATTNVLHFVTDGTAKLMFSYKKVLYYTPLVLILKCLCDY 120

Query: 276 ---------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL 314
                                C+  M+++LH E +HT  D KV+ G++F+ K       L
Sbjct: 121 CDQFIYQKLIQGYQHDSYYLDCVQNMLRNLHIENLHTHEDCKVYLGKMFRVKFYECPDWL 180

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
            + EI D++L  CI+ HLD   DKF  L  M  KLF  VQ   + +  D++M+QE++ GG
Sbjct: 181 TDSEIADFILKKCIMIHLDKPEDKFNMLVFMCQKLFVFVQDKCKPEGADAVMMQELLLGG 240

Query: 375 SLYLQLLKKEKSG-----TSAVLKESD-----------IYAAFRASSIESAMTNFLATGN 418
            LYLQL+K+   G      S +LK S            + AA R+  +E+A   FLATGN
Sbjct: 241 HLYLQLIKERLQGWLFGLKSNILKRSSTLTGHLSQTEILQAAKRSGGLENAFEMFLATGN 300

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
           +++  +S L LMQ  G  I+AENINRMRYMSHF+AVHRG++FQEMR++E RQL  DAWGF
Sbjct: 301 ITS--SSGLGLMQDKGLTIVAENINRMRYMSHFKAVHRGAFFQEMRTTEVRQLLPDAWGF 358

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL 538
           ICPVHTPDG PCGLLNHLTTNC +++   ++ +  IP +L  LGM+ L  V     +Q  
Sbjct: 359 ICPVHTPDGAPCGLLNHLTTNCSVTDVPDARKVENIPIILTRLGMVALKYVASVGFDQNY 418

Query: 539 MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT 598
           +V+LDGR++GY+   +A  LV +LR+ KI GE++P +LEIV L    K    +PGLYLFT
Sbjct: 419 VVVLDGRVLGYVRRDLAPKLVEQLRLCKIKGEEVPNTLEIV-LVPLMKVTAQFPGLYLFT 477

Query: 599 GPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLI 658
           GP RM+RP++NL    +E++GTFEQV+MDIC++  E Y G+TTH ELSK  FLSNLA LI
Sbjct: 478 GPARMMRPLLNLKTKEVEFVGTFEQVYMDICVSPDEYYKGVTTHMELSKLAFLSNLAQLI 537

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           PMPDCNQSPRNMYQCQMGKQTMGTPC NWR Q   KLYRLQTPA+P FRPVHYD +++D+
Sbjct: 538 PMPDCNQSPRNMYQCQMGKQTMGTPCHNWRSQSETKLYRLQTPATPLFRPVHYDNINLDD 597

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
           F MGTNAIVAVISYTGYDMEDAMI+NK++ ERGFAHG I+K+ F+ LE            
Sbjct: 598 FAMGTNAIVAVISYTGYDMEDAMIINKAADERGFAHGSIYKTEFVTLE------------ 645

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK 838
                                             YF R+P    L + L  DGL  +G +
Sbjct: 646 ------------------------------HESSYFCRNPEKPELAEFLDTDGLPIIGRR 675

Query: 839 LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRN 898
           + + DP+Y Y+   E+ Y   ++SGKEE  V++V++ + F      T   A   +R+ RN
Sbjct: 676 MKDGDPLYCYYSVDESVYKVTKFSGKEECFVDMVKLCASF----ETTNRTACFTFRVPRN 731

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P VGDKFASRAGQKGICS KWP EDLPFT++GLVPDIVFNPHGFPSRMTI  +
Sbjct: 732 PNVGDKFASRAGQKGICSQKWPMEDLPFTETGLVPDIVFNPHGFPSRMTIAMM 784



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 43/56 (76%), Gaps = 5/56 (8%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
           GYNYYGTETMYSG+DG  M AQIFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 825 GYNYYGTETMYSGIDGREMTAQIFFGIVHYQRLRHMVSDKWQVRSTGPTDILTRQP 880


>gi|195437584|ref|XP_002066720.1| GK24411 [Drosophila willistoni]
 gi|194162805|gb|EDW77706.1| GK24411 [Drosophila willistoni]
          Length = 1122

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/965 (45%), Positives = 589/965 (61%), Gaps = 109/965 (11%)

Query: 42  SAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YG 100
           + P+L N +   F + P + N+ L  LGAPH+ SFD ML  GLD   + + P++F+   G
Sbjct: 3   TTPTLTN-SRPEFKEIPKELNKHLANLGAPHVDSFDEMLSVGLDHLAKHVIPMQFQTPAG 61

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
           + + L I   +I++P+ P   + +   + YPT+ARQ  + Y G  ++ +AW  +G    +
Sbjct: 62  ERISLRIESISIAKPQAPQDVIDVRTREIYPTDARQLHASYMGMCSIRLAWQVNGLQKTS 121

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
              ++G VPIML+SK C+L   +P ++++ GEH  EWGG FI+ G+EK+VR+L+  RRNH
Sbjct: 122 INMDLGEVPIMLRSKACNLGGASPKEMVQHGEHDSEWGGIFIIRGNEKIVRMLVLTRRNH 181

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM----- 275
           PI +KR++WK+RG  FSDLGV +++V+ DES+ +NVLH++ NGSARFMFSH K +     
Sbjct: 182 PICVKRSSWKDRGHNFSDLGVLVQTVRADESSFSNVLHYLNNGSARFMFSHVKRLSYVPV 241

Query: 276 -------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
                                          C+  M++ +  EG++T    + F G +F+
Sbjct: 242 CLILKCLMDYTDEEIYNRLIQGYETDQYYISCVQTMLRDVQNEGVYTHAQCRNFIGTLFR 301

Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
            ++           + D++L   I+ HLD Y DKF  +  M  KLF   QG  ++++ DS
Sbjct: 302 SRIAEVPEWEPAEAVTDFILRERIMVHLDSYEDKFQLIVFMVQKLFQCAQGKYKVENVDS 361

Query: 365 IMLQEIMTGGSLY------------LQLLK---KEKSGTSAVLKESDIYAAFR-ASSIES 408
            M+QE++  G LY             QL K   K+ +   A+L  S +    R A  +  
Sbjct: 362 AMMQEVLLPGHLYQKYLGERIEMWMFQLRKCLLKKLTTPDALLSSSTLTQCMRQAGGVGR 421

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
           ++ +FLATGN+++   S L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR++E 
Sbjct: 422 SIESFLATGNIAS--RSGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEA 479

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTP 528
           RQL  DAWGF+CPVHTPDGTPCGLLNHLT  C+IS+    K++  IP+ L+ +GMLPL+ 
Sbjct: 480 RQLLPDAWGFVCPVHTPDGTPCGLLNHLTLTCEISKRPDPKLVKAIPAKLIEMGMLPLSH 539

Query: 529 VIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
             Q  PE  L +V LDGR +G+I    AT +V  LR  KI+GE +PK LEI ++  P K 
Sbjct: 540 RPQ--PESKLYVVFLDGRHLGHIYQSDATKIVEDLRYGKIMGE-LPKMLEIGFI--PFKK 594

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
            G +PGL+L T P RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH EL+K
Sbjct: 595 NGQFPGLFLATSPARMMRPVWNLKWQRVEYIGTLEQLYMEIAIDEKEMYPDFTTHLELAK 654

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
           T F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTP +P FR
Sbjct: 655 THFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFR 714

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           PVH+D + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+KS F++L  
Sbjct: 715 PVHHDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKSKFVQLP- 773

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                                                    +   YF R P    L+  L
Sbjct: 774 -----------------------------------------KKSSYFARHPHMPELQKYL 792

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP- 886
             DGL + G KL+   PMY Y+      Y   +   KE+  V+ +R    F     + P 
Sbjct: 793 DTDGLPHPGTKLSYGCPMYCYFDGEVATYKVMKMDEKEDCFVDSIRQLGSF----ELQPR 848

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPSRM
Sbjct: 849 KSVCITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRM 908

Query: 947 TIGFL 951
           TI  +
Sbjct: 909 TIAMM 913



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 954 GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 997


>gi|198473780|ref|XP_001356442.2| GA17896 [Drosophila pseudoobscura pseudoobscura]
 gi|198138104|gb|EAL33506.2| GA17896 [Drosophila pseudoobscura pseudoobscura]
          Length = 1126

 Score =  820 bits (2118), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/965 (45%), Positives = 588/965 (60%), Gaps = 109/965 (11%)

Query: 42  SAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YG 100
           + P L N +   F   P + N+ L  LGAPH+ SFD ML  GLD   + +  I+ +   G
Sbjct: 7   TDPVLTN-SRPEFKAIPKQLNKHLANLGAPHVDSFDEMLTVGLDFVAKHMPAIQMQSPAG 65

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
           + + L +    I++P+VP   + +   + YPT++RQ  + YSG  +V +AWS +G     
Sbjct: 66  ERISLKVENIWIAKPQVPQDVIDVRTREIYPTDSRQLHASYSGMCSVRLAWSVNGLQKTP 125

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
              ++G VP+ML+SK C+L   TP ++++ GEH  EWGG F++ G+EK+VR+L+  RRNH
Sbjct: 126 INMDLGEVPVMLRSKACNLGKGTPQEMVKHGEHDTEWGGIFVIRGNEKIVRMLVLVRRNH 185

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM----- 275
           PI +KR+ WK+RG  FSDLG+ +++V+ DE + +NVLH++ NG+ARFMFSH K +     
Sbjct: 186 PICVKRSTWKDRGQNFSDLGIMVQTVRDDECSFSNVLHYLNNGTARFMFSHIKRLSYVPV 245

Query: 276 -----CLLG--------------------------MMQSLHEEGIHTQHDSKVFFGQIFK 304
                CL+                           M++ +H EG++T    + F G +F+
Sbjct: 246 CLILKCLMDYTDEEIYNRLVQGYEKDQYYVSSVQTMLRDVHNEGVYTHAQCRSFIGTLFR 305

Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
            +         + ++ D++L   IL HLD Y +KF  +  M  KLF   QG  ++++ DS
Sbjct: 306 SRFNVVPEWQPDEDVTDFILRERILVHLDTYEEKFQLIVFMVQKLFQCAQGKHKVENVDS 365

Query: 365 IMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-ASSIES 408
            M+QE++  G LY +               +L+K+ S   ++L  S +  + R A  +  
Sbjct: 366 AMMQEVLLPGHLYQKYLGERIENWVAMVRRVLQKKLSTPDSLLTSSILTQSMRQAGGVGK 425

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
           ++ +FLATGN+++  N+ L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR++E 
Sbjct: 426 SIESFLATGNIAS--NTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEA 483

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTP 528
           RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS+    K++  IP  L+ +GMLPL+ 
Sbjct: 484 RQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISKRPDPKLVQAIPPKLIEMGMLPLS- 542

Query: 529 VIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
             Q  P+  + +V+LDG+ +G+I    A  +V  LR  KI G  +P+ +EI ++  P K 
Sbjct: 543 -CQRNPDSKMYVVLLDGKHLGHIFQSDACKIVEDLRYEKITG-AVPQMMEIGFI--PFKK 598

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
            G +PGLYL TGP RM+RPV N+    +E+IGT EQ++M+I I  KE YP  TTH EL+K
Sbjct: 599 NGQFPGLYLSTGPARMMRPVWNIKWKQVEYIGTLEQLYMEIAIDPKEMYPDFTTHLELAK 658

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
           T F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTP +P FR
Sbjct: 659 THFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFR 718

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           PVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NKS+YERGFA+G I+KS F++L  
Sbjct: 719 PVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFVQLP- 777

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                                                    +   YF R P    L   L
Sbjct: 778 -----------------------------------------KKSSYFARHPHMPELAKYL 796

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP- 886
             DGL + GAKL    P+Y Y+      Y   +   KEE  V+ +R    F     +TP 
Sbjct: 797 DTDGLPHPGAKLTFGCPLYCYFDGEVATYKVEKMDEKEECFVDSIRQLGSF----DLTPK 852

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SG++PDIVFNPHGFPSRM
Sbjct: 853 KTVCITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGMIPDIVFNPHGFPSRM 912

Query: 947 TIGFL 951
           TI  +
Sbjct: 913 TIAMM 917



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 958  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1001


>gi|195118276|ref|XP_002003666.1| GI21635 [Drosophila mojavensis]
 gi|193914241|gb|EDW13108.1| GI21635 [Drosophila mojavensis]
          Length = 1122

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/963 (45%), Positives = 586/963 (60%), Gaps = 109/963 (11%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKT 102
           P L N +   F + P K N+ L  LGAPH+ SF+ ML  GL    + I P +F+   G+ 
Sbjct: 5   PVLTN-SRPEFKQIPKKLNKHLANLGAPHVESFNEMLSVGLGHVAKHIVPQQFQTPAGER 63

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + +NI    IS+P+VP   + +   + YPT+ARQ  + YSG  +V + WS +     +  
Sbjct: 64  ISINIDSIWISKPQVPMDVIDVRTREIYPTDARQLHASYSGVCSVRLGWSVNDLEKPSIN 123

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
            ++G VP+ML+S  C+L + +PA++++ GEH  EWGG F++ G+EK+VR+LI  RRN+PI
Sbjct: 124 MDLGDVPVMLRSHACNLGSASPAEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNYPI 183

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
            +KR++WK+RG  FS+LG+ +++V+ DE +  NVLH++ NG+ARFMFSH K +       
Sbjct: 184 CVKRSSWKDRGHNFSELGIMVQTVRDDEMSLTNVLHYLNNGTARFMFSHVKRLSYVPVCL 243

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ +  EG++T    + F G +F+ +
Sbjct: 244 ILKCLMDYTDEQIYNCLVQGYESDQYYLTCVQSMLRDVQNEGVYTSAQCRSFIGTLFRSR 303

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
            Q     + +  + ++++   I+ HL+   +KF  +  M  KLF   QG  ++++ DS M
Sbjct: 304 FQEVPEWMPDEAVTEFIIRERIMVHLNTNEEKFQLIVFMVQKLFQCAQGKFKVENVDSAM 363

Query: 367 LQEIMTGGSLYLQ----------------LLKKEKSGTSAVLKESDIYAAFRASSIESAM 410
           +QE++  G LY +                LLKK  +  S V          +A  +  AM
Sbjct: 364 MQEVLLPGHLYQKYLGERLEMWLMHLRKCLLKKLNTPDSLVSSSIMTQCMRQAGGVGRAM 423

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
            +FLATGNV++   + L LMQ++G VIMAENINRMRYMSHFRA+HRGSYF  MR++E RQ
Sbjct: 424 ESFLATGNVAS--RTGLGLMQSTGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQ 481

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L  DAWGFICPVHTPDGTPCGLLNHLT  C+IS+    K++  IPS+L+ +GM+PL+   
Sbjct: 482 LLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISKRPDPKLVQAIPSMLLEMGMIPLSQ-- 539

Query: 531 QSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMG 589
           Q  P+  L +V LDG+ +G+I    A  +V  LR  KI G K+P+ +EI ++  P K  G
Sbjct: 540 QGQPDAKLYVVFLDGKHLGHIFQTEANKIVEDLRYAKITG-KVPEMMEIGFI--PYKKNG 596

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
            +PGL+L TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH ELSKT 
Sbjct: 597 QFPGLFLCTGPTRMMRPVWNLKWRRVEYIGTLEQLYMEIAIDEKEMYPDFTTHLELSKTH 656

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
           F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTPA+P FRPV
Sbjct: 657 FMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWSKQAANKLYRLQTPATPLFRPV 716

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
           HYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NKS+YERGFA+G I+KS F++L    
Sbjct: 717 HYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFVQLS--- 773

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
                                                  + + YF R P    L   L  
Sbjct: 774 ---------------------------------------KKQSYFARHPHMPELIKHLDT 794

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP-NC 888
           DGL + G KL+   P+Y Y+    + Y   +   KE+  V+ VR    F     + P   
Sbjct: 795 DGLPHPGTKLSYGSPLYCYFDGEVSTYKVVKMDEKEDCIVDSVRQLGSF----EIMPRKT 850

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPSRMTI
Sbjct: 851 VCITLRVARPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTI 910

Query: 949 GFL 951
             +
Sbjct: 911 AMM 913



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 954 GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 997


>gi|321453922|gb|EFX65117.1| hypothetical protein DAPPUDRAFT_333503 [Daphnia pulex]
          Length = 1153

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/971 (45%), Positives = 587/971 (60%), Gaps = 110/971 (11%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK-T 102
           PSLK   + NFG PP K+N FL TLG P + SFD+M   GL  A  D+ P+EFE+  +  
Sbjct: 12  PSLKYTQNPNFGVPPGKRNLFLKTLGEPAVQSFDYMFHGGLKKAALDMLPVEFEMKNQLK 71

Query: 103 LKLNIVKAAISEPKVPAGPVGI-HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
           +KL I K +I +P V    V      + +P E R   S Y G   V V WS      G  
Sbjct: 72  IKLKINKISIYKPTVGDDVVPPPKIPETFPKECRMRNSTYKGKLFVQVGWSISKTPEGPL 131

Query: 162 TKEV------GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLIN 215
             +V      G +P+M++S+ C+L  L+P +L+ +GEH  EWGGYF+V GHE+++R++  
Sbjct: 132 IAQVPFERCLGEIPVMIQSELCNLSGLSPKELVSKGEHEQEWGGYFVVKGHERILRMISA 191

Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM 275
            R+N+P+ ++R+ WK RG LF+D GV+IR VK D +ATNNVLH+++NG+ R MF+ +K +
Sbjct: 192 TRKNYPMTVQRDVWKRRGKLFTDKGVFIRCVKEDMTATNNVLHYLSNGTMRLMFNFKKIL 251

Query: 276 --------------C----------------------LLGMMQSLHEEGIHTQHDSKVFF 299
                         C                      ++ M++ L +EG++T    + F 
Sbjct: 252 YVFPLMLVLKALINCTDSYIYEQLVQGLEGDIYYKDRIVLMLRQLQDEGLYTHEHVRNFI 311

Query: 300 GQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
           G+ F+ K     +   + ++C ++L N +L HL D  DKF  L  M  KLF    G   L
Sbjct: 312 GRNFRAKFTDLPKWYTDEQVCKFLLENSVLFHLKDNKDKFNLLVFMARKLFAFAYGKCAL 371

Query: 360 DSEDSIMLQEIMTGGSLYLQL----------------LKKEKSGTSAVLKESDIYAAF-R 402
           +  D +M+QEI   G LYLQL                LK+E+   + VL  S++  A  +
Sbjct: 372 EGMDPVMMQEISLPGHLYLQLVKDRLASWLTVVKYVILKRERMTKNFVLTSSEMGIALSK 431

Query: 403 ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
           +  I+SA+ N  ATGN+     + L + Q +G  IMAENIN MRYMSHFRAVHRG+ F +
Sbjct: 432 SGKIDSAIENVFATGNLPG--TADLGMNQNTGLSIMAENINHMRYMSHFRAVHRGAVFMD 489

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
            RSSE RQL+ DAWGF+CPVHTPDG+PCGLLNHL+  C +     ++  + IP++LV+LG
Sbjct: 490 SRSSEVRQLKPDAWGFLCPVHTPDGSPCGLLNHLSATCHVVN--TTQDTSGIPTLLVALG 547

Query: 523 MLPLTPVIQSIP-EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVY 580
           M P+   I +    +  +VML+GR++G + D+ AT  V KLRMLK+ G E +PK+LEI +
Sbjct: 548 MTPVEETIHNNNYSECYVVMLEGRVLGRVGDRSATRFVDKLRMLKVRGAENVPKTLEIAF 607

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           + R   G   YPG+YLFT   RM+RPV N+AAG +E +GTFEQV+++IC+T  E   GI 
Sbjct: 608 VPRTLNGQ--YPGIYLFTASARMMRPVYNIAAGTVELVGTFEQVYLNICVTEDENENGIF 665

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH+ELS+T FLSNLA LIP+PD NQSPRNMYQCQMGKQTMGTP  NWR+Q   KLYRLQT
Sbjct: 666 THQELSETSFLSNLACLIPLPDFNQSPRNMYQCQMGKQTMGTPVHNWRFQTNSKLYRLQT 725

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
           P +P FRP H+D ++MD+F MGTNAIVAVISYTGYDMEDAM++N++S +RGFAHG ++ S
Sbjct: 726 PTTPLFRPAHWDRINMDDFAMGTNAIVAVISYTGYDMEDAMVINRASLQRGFAHGQVYTS 785

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             I+L+                      +I  G                   YF RDPAN
Sbjct: 786 KVIDLK----------------------EIGKG----------------NSRYFKRDPAN 807

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
             L++ L  DGL Y G  L ERDP Y Y      +Y   +Y G E M V  + +      
Sbjct: 808 DDLKEFLDEDGLPYPGILLQERDPYYCYLDVETAKYSVAKYKGTEAMYVANINIIGADWM 867

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
            G    N   I +RI RNP +GDKFASRAGQKGICS +W AEDLP+T+SG++PDIVFNPH
Sbjct: 868 SGM---NKVTITFRIPRNPQIGDKFASRAGQKGICSQQWLAEDLPWTESGMIPDIVFNPH 924

Query: 941 GFPSRMTIGFL 951
           GFPSRMTI  +
Sbjct: 925 GFPSRMTIAMM 935



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 40/46 (86%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E+GY+YYGTE +YSG+DG  M A IFFGVVHYQRLRHMVSDK+Q +
Sbjct: 974  EAGYSYYGTEKLYSGIDGREMDADIFFGVVHYQRLRHMVSDKFQVR 1019


>gi|194766529|ref|XP_001965377.1| GF20648 [Drosophila ananassae]
 gi|190617987|gb|EDV33511.1| GF20648 [Drosophila ananassae]
          Length = 1129

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/964 (45%), Positives = 587/964 (60%), Gaps = 107/964 (11%)

Query: 42  SAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YG 100
           + P L N +   F + P K N  L  LGAPH+ SFD ML  GLDL  + + P  ++   G
Sbjct: 10  TTPVLTN-SRPEFKQIPKKLNRHLANLGAPHVDSFDEMLTAGLDLVAKHMVPAHWQSPAG 68

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
           + + L +    IS+P+VP   + +   + YPT++RQ  + YSG  +V + +S +G     
Sbjct: 69  EQISLKVEAIWISKPQVPQDVIDVRTRQVYPTDSRQLHASYSGMCSVRLGYSVNGVPSAP 128

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
              ++G VPIML+SK C+L   +P ++++ GEH  EWGG F++ G+EK+VR+LI  RRNH
Sbjct: 129 INADLGEVPIMLRSKACNLGKASPKEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNH 188

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM----- 275
           PI IKR++WK+RG  FSD+GV +++V+ DE++ NNVLH++ NG+A+FMFSH K +     
Sbjct: 189 PICIKRSSWKDRGQNFSDIGVLVQTVREDETSFNNVLHYLNNGTAKFMFSHVKRLSYVPV 248

Query: 276 -------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
                                          C+  M++ +  E ++T    + F G +F+
Sbjct: 249 CLILKCLMDYTDEEIYNRLIQGYESDQYYLSCVQSMLREVQNENVYTHSQCRSFIGNLFR 308

Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
            +         + ++ D++L   I+ HLD Y DKF  +  M  KLF   QG  ++++ DS
Sbjct: 309 SRFPEVPEWQPDEDVTDFILKERIMVHLDSYEDKFQLIVFMVQKLFQCAQGKQKVENVDS 368

Query: 365 IMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-ASSIES 408
            M+QE++  G LY +                L+K+ +   +++  + +    R A  +  
Sbjct: 369 AMMQEVLVPGILYQKYIGERIETWMMQVRRCLQKKLTTPDSLVNSALMTQCMRQAGGVGR 428

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
           +M +FLATGN+ +   + L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR++E 
Sbjct: 429 SMESFLATGNIVS--RTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEA 486

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTP 528
           RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS+    +++  IPS L+ +GMLPL+ 
Sbjct: 487 RQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISKRPDPELVKAIPSKLIEMGMLPLSN 546

Query: 529 VIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
             +  P+  L +V LDGR +G+I    AT +V +LR  KI G  +P+ +EI ++  P K 
Sbjct: 547 --RRDPDAKLYVVFLDGRHLGHIHQSDATKIVEELRHGKIFGS-LPQMMEIGFI--PFKK 601

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
            G +PGL+L TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH EL+K
Sbjct: 602 NGQFPGLFLATGPARMMRPVWNLKWKKVEYIGTLEQLYMEIAIDPKEMYPDFTTHLELAK 661

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
           T F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTP +P FR
Sbjct: 662 THFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFR 721

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           PVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+K+ F+ L+ 
Sbjct: 722 PVHYDNIKLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFVSLD- 780

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                                                    +   YF R P    L   L
Sbjct: 781 -----------------------------------------KKSSYFCRHPHMPELVKYL 799

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL + G+KL+  +P+Y Y+      Y   +   KE+  V+ +R    F    SV   
Sbjct: 800 DTDGLPHPGSKLSYGNPLYCYFDGEVATYKVVKMDEKEDCFVDSIRQLGSFDV--SVKKM 857

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
            A I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPSRMT
Sbjct: 858 VA-ITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMT 916

Query: 948 IGFL 951
           I  +
Sbjct: 917 IAMM 920



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 961  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004


>gi|195388314|ref|XP_002052825.1| GJ17773 [Drosophila virilis]
 gi|194149282|gb|EDW64980.1| GJ17773 [Drosophila virilis]
          Length = 1122

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/963 (45%), Positives = 586/963 (60%), Gaps = 109/963 (11%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKT 102
           P L N +   F + P+K N+ L  LGAPH+ SFD ML  GL+     + P +F+   G+ 
Sbjct: 5   PVLTN-SRPEFKQIPEKLNKHLANLGAPHVDSFDEMLSVGLEHVARYMVPQQFQTPAGER 63

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + +NI    I++P+VP   + +   + YPT+ARQ  + YSG  +V + WS +        
Sbjct: 64  ISINIESIWITKPQVPMDVIDVRTREIYPTDARQLHASYSGVCSVRLGWSVNDLEKTPIN 123

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
            ++G VP+ML+S+ C+L   TP  +++ GEH  EWGG F++ G+EK+VR+LI  RRNHPI
Sbjct: 124 MDLGEVPVMLRSRACNLGKATPQDMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPI 183

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
            +KR++WK+RG  FS+LGV +++V+ DE +  NVLH++ NG+ARFMFSH K +       
Sbjct: 184 CVKRSSWKDRGHNFSELGVMVQTVRDDELSLTNVLHYLNNGTARFMFSHVKRLSYVPVCL 243

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ +  EG++T    + F G +F+ +
Sbjct: 244 ILKCLMDYTDEQIYNCLVQGYESDQYYLTCVQSMLRDVQNEGVYTSAQCRSFIGTLFRSR 303

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
                  L +  + +Y++   I+ HL    +KF  +  M  KLF   QG  ++++ DS M
Sbjct: 304 FPEVPDWLPDEAVTEYIMRERIMVHLATNEEKFQLIVFMVQKLFQCAQGKYKVENVDSAM 363

Query: 367 LQEIMTGGSLY------------LQL---LKKEKSGTSAVLKESDIYAAFR-ASSIESAM 410
           +QE++  G LY            LQL   L K+ +   ++   S +    R A  +  AM
Sbjct: 364 MQEVLLPGHLYQKYLGERIEMWLLQLRRCLLKKLNAPDSLASSSIMTQCMRQAGGVGRAM 423

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
            +FLATGNV++   + L LMQ+SG VIMAENINRMRYMSHFRA+HRGSYF  MR++E RQ
Sbjct: 424 ESFLATGNVAS--RTGLGLMQSSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQ 481

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L  DAWGFICPVHTPDGTPCGLLNHLT  C+IS+    K++  IP++L+ +GM+PL+   
Sbjct: 482 LLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISKRPDPKLVQAIPAMLLEMGMMPLSQ-- 539

Query: 531 QSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMG 589
           Q  P+  L +V LDG+ +G+I    AT +V  LR  KI G+ +P+ +EI ++  P K  G
Sbjct: 540 QGQPDAKLYVVFLDGKHLGHIFQTEATKMVEDLRYAKITGQ-VPEMMEIGFI--PYKKNG 596

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
            +PGL+L TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH ELSKT 
Sbjct: 597 QFPGLFLSTGPTRMMRPVWNLKWQRVEYIGTLEQLYMEIAIDEKEMYPDFTTHLELSKTH 656

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
           F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTPA+P FRPV
Sbjct: 657 FMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATPLFRPV 716

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
           HYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NKS+YERGFA+G I+KS F++L    
Sbjct: 717 HYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFVQLA--- 773

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
                                                  + + YF R P    L   L  
Sbjct: 774 ---------------------------------------KKQSYFARHPHMPELIKHLDT 794

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP-NC 888
           DGL + G KL+   P+Y Y+    + +   +   KE+  V+ VR    F     + P   
Sbjct: 795 DGLPHPGTKLSYGSPLYCYFDGEVSTFKVVKMDEKEDCVVDSVRQLGSF----ELMPRKT 850

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPSRMTI
Sbjct: 851 VCITLRVARPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTI 910

Query: 949 GFL 951
             +
Sbjct: 911 AMM 913



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 954 GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 997


>gi|195470252|ref|XP_002087422.1| GE16780 [Drosophila yakuba]
 gi|194173523|gb|EDW87134.1| GE16780 [Drosophila yakuba]
          Length = 1129

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/967 (44%), Positives = 582/967 (60%), Gaps = 105/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
           Q   + P L N +   F + P K +  L  LGAPH+ SFD ML  GLD   +++ P  + 
Sbjct: 6   QQMKTIPVLTN-SRPEFKQIPKKLSRHLANLGAPHVDSFDEMLTLGLDNVAKNMIPAHWL 64

Query: 97  EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              G+ + + +    IS+PKVP   + +   + YPT++RQ    YSG  +V + WS +G 
Sbjct: 65  SPAGEKISMKVESIWISKPKVPQDVIDVRTREIYPTDSRQLHISYSGMCSVRLGWSVNGV 124

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+SK C+L   TP ++++ GEH  EWGG F++ G+EK+VR+LI  
Sbjct: 125 EKSPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMT 184

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
           RRNHPI +KR++WK+RG  FSDLG+ +++V+ DES+ +NV+H++ NG+A+FMFSH K + 
Sbjct: 185 RRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLS 244

Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
                                              C+  M++ +  E ++T    K F G
Sbjct: 245 YVPVCLILKCLMDFTDEEIYNRLVKGYESDQYYVSCVQSMLREVQNENVYTHAQCKSFIG 304

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
            +F+ +         + ++ D++L   ++ HLD+Y DKF  +  M  KLF   QG  +++
Sbjct: 305 NLFRARFPEVPEWQPDEDVTDFILRERVMIHLDNYEDKFQLIVFMIQKLFQCAQGKYKVE 364

Query: 361 SEDSIMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-AS 404
           + DS M+QE++  G LY +                L+K+ +   A+L  + +    R A 
Sbjct: 365 NVDSAMMQEVLLPGHLYQKYLGERVESWVSQVRRCLQKKLTSPDALLTSAVMTQCMRQAG 424

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            +  A+ +FLATGN+++   + L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR
Sbjct: 425 GVGRAIESFLATGNIAS--RTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMR 482

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++E RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS     K++  IP+ L+ +GM+
Sbjct: 483 TTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPTQLIDMGMI 542

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           PL+    S  E+  +V LDG+ +G+I    A  +V  LR  KI G  +P+ +EI ++  P
Sbjct: 543 PLSNRSYS-GEKLYVVFLDGKHLGHIHQSEANKIVDDLRYGKIFG-TLPQMMEIGFI--P 598

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K  G +PGLYL TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH E
Sbjct: 599 FKKNGQFPGLYLATGPARMMRPVWNLKWNKVEYIGTLEQLYMEIAIDQKEMYPDFTTHLE 658

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L+KT F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTPA+P
Sbjct: 659 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATP 718

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+K+ F+ 
Sbjct: 719 LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLT 778

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                          +   YF R P    L 
Sbjct: 779 LD------------------------------------------KKSSYFARHPHMPELV 796

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             L  DGL + G+KL+   P+Y Y+      Y   +   KE+  VE +R    F      
Sbjct: 797 KHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDLSPKK 856

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
           T     I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPS
Sbjct: 857 T---VAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPS 913

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 914 RMTIAMM 920



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 961  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004


>gi|195032695|ref|XP_001988542.1| GH11221 [Drosophila grimshawi]
 gi|193904542|gb|EDW03409.1| GH11221 [Drosophila grimshawi]
          Length = 1125

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/963 (45%), Positives = 581/963 (60%), Gaps = 109/963 (11%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY-GKT 102
           P L N +   F + P+K N+ L  LGAPH+ SFD ML  GL+   + + P +F+   G+ 
Sbjct: 8   PVLTN-SRPEFKQIPNKLNKHLANLGAPHVDSFDEMLSVGLENMAKYMTPQQFQTAAGER 66

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + L +    I++P+VP   + +   + YPT+ARQ  + YSG  ++ + WS +        
Sbjct: 67  IHLKVESIWIAKPQVPLDVIDVRTREIYPTDARQLHASYSGQCSLRLGWSVNDLDKSAIN 126

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
            ++G VPIML+S+ C+L   +P ++++ GEH  EWGG F++ G+EK+VR+LI  RRNHPI
Sbjct: 127 VDLGEVPIMLRSQACNLGQASPTEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPI 186

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
            +KR++WK+RG  FS+LGV +++V+ DE +  N LH++ NG+ARFMFSH K +       
Sbjct: 187 CVKRSSWKDRGHNFSELGVMVQTVRDDELSLTNTLHYLNNGTARFMFSHMKRLSYVPVCL 246

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ +  EG++T    + F G +F+ +
Sbjct: 247 ILKCLMDYTDEQIYNCLVQGYESDQYYLTCVQSMLRDVQNEGVYTSAQCRSFIGTLFRSR 306

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
                  L +  + +++L   I+ HL    +KF  +  M  KLF   QG  ++++ DS M
Sbjct: 307 FPEVPEWLPDEAVTEFILRERIMVHLQTNEEKFQLIVFMVQKLFQCAQGKFKVENVDSAM 366

Query: 367 LQEIMTGGSLYLQ----------------LLKKEKSGTSAVLKESDIYAAFRASSIESAM 410
           +QE++  G LY +                LLKK  +  S V          +A  +  ++
Sbjct: 367 MQEVLLPGHLYQKYLGERIEMWLMQLRKCLLKKLSTADSLVSSSIMTQCMRQAGGVGRSI 426

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
            +FLATGNV++   S L LMQ+SG VIMAENINRMRYMSHFRA+HRGSYF  MR++E RQ
Sbjct: 427 ESFLATGNVAS--RSGLGLMQSSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQ 484

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L  DAWGFICPVHTPDGTPCGLLNHLT  C+IS+    K++  IP++L  +GMLPLT   
Sbjct: 485 LLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISKRPDPKLVQGIPALLFEMGMLPLTQ-- 542

Query: 531 QSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMG 589
           Q  P+  L +V LDG+ +G+I    A  +V  LR  KI G+ +PK +EI ++  P K  G
Sbjct: 543 QDHPDAKLYVVFLDGKHLGHIFQTEADKIVEDLRYAKITGQ-VPKMMEIGFI--PFKKNG 599

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
            +PGL+L TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH ELSKT 
Sbjct: 600 QFPGLFLSTGPARMMRPVWNLKWKQVEYIGTLEQLYMEIAIDEKEMYPDFTTHLELSKTH 659

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
           F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTPA+P FRPV
Sbjct: 660 FMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATPLFRPV 719

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
           HYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+KS F++L    
Sbjct: 720 HYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKSKFVQLA--- 776

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
                                                  + + YF R P    L   L  
Sbjct: 777 ---------------------------------------KKQSYFARHPNMPELIKYLDT 797

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP-NC 888
           DGL   GAKL+   P Y Y+    + +   +   KE+  V+ VR    F     +TP   
Sbjct: 798 DGLPQPGAKLSYGCPFYCYFDGEVSTFKVVKMDEKEDCIVDSVRQLGSF----ELTPRKT 853

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPSRMTI
Sbjct: 854 VCITLRVARPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTI 913

Query: 949 GFL 951
             +
Sbjct: 914 AMM 916



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 957  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1000


>gi|195575535|ref|XP_002077633.1| GD23021 [Drosophila simulans]
 gi|194189642|gb|EDX03218.1| GD23021 [Drosophila simulans]
          Length = 1129

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/967 (44%), Positives = 582/967 (60%), Gaps = 105/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
           Q   + P L N +   F + P K +  L  LGAPH+ SFD ML  GLD + + + P  + 
Sbjct: 6   QQMKTIPVLTN-SRPEFKQIPKKLSRHLANLGAPHVDSFDEMLTVGLDYSAKHMIPNHWL 64

Query: 97  EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              G+ + + +    I++PKVP   + +   + YPT++RQ    YSG  +V + WS +G 
Sbjct: 65  SPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGV 124

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+SK C+L   TP ++++ GEH  EWGG F++ G+EK+VR+LI  
Sbjct: 125 EKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMT 184

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
           RRNHPI +KR++WK+RG  FSDLG+ +++V+ DES+ +NV+H++ NG+A+FMFSH K + 
Sbjct: 185 RRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLS 244

Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
                                              C+  M++ +  E ++T    K F G
Sbjct: 245 YVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQSMLREVQNENVYTHAQCKSFIG 304

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
            +F+ +         + ++ D++L   ++ HLD+Y DKF  +  M  KLF   QG  +++
Sbjct: 305 NLFRARFPEVPEWQPDEDVTDFILRERVMIHLDNYEDKFQLIVFMIQKLFQCAQGKYKVE 364

Query: 361 SEDSIMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-AS 404
           + DS M+QE++  G LY +                L+K+ +   A++  + +    R A 
Sbjct: 365 NVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAG 424

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            +  A+ +FLATGN+++   + L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR
Sbjct: 425 GVGRAIESFLATGNIAS--RTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMR 482

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++E RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS     K++  IP  L+ +GM+
Sbjct: 483 TTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMM 542

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           PL+   + + E+  +V LDG+ +G+I    A  +V +LR  KI G  +P+ +EI ++  P
Sbjct: 543 PLSSR-RYLGEKLYVVFLDGKHLGHIHQSEADKIVDELRYGKIFG-TLPQMMEIGFI--P 598

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K  G +PGLYL TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH E
Sbjct: 599 FKKNGQFPGLYLATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLE 658

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L+KT F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTP +P
Sbjct: 659 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTP 718

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+K+ F+ 
Sbjct: 719 LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLT 778

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                          +   YF R P    L 
Sbjct: 779 LD------------------------------------------KKSSYFARHPHMPELI 796

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             L  DGL + G+KL+   P+Y Y+      Y   +   KE+  VE +R    F      
Sbjct: 797 KHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDLSPKK 856

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
           T     I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPS
Sbjct: 857 T---VAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPS 913

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 914 RMTIAMM 920



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 961  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004


>gi|195350089|ref|XP_002041574.1| GM16738 [Drosophila sechellia]
 gi|194123347|gb|EDW45390.1| GM16738 [Drosophila sechellia]
          Length = 1129

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/967 (44%), Positives = 580/967 (59%), Gaps = 105/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
           Q   + P L N +   F + P K +  L  LGAPH+ SFD ML  GLD + + + P  + 
Sbjct: 6   QQMKAIPVLTN-SRPEFKQIPKKLSRHLANLGAPHVDSFDEMLTVGLDYSAKHMIPNHWL 64

Query: 97  EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              G+ + + +    I++PKVP   + +   + YPT++RQ    YSG  +V + WS +G 
Sbjct: 65  SPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGV 124

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+SK C+L   TP ++++ GEH  EWGG F++ G+EK+VR+LI  
Sbjct: 125 EKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMT 184

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
           RRNHPI +KR++WK+RG  FSDLG+ +++V+ DES+ +NV+H++ NG+A+FMFSH K + 
Sbjct: 185 RRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLS 244

Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
                                              C+  M++ +  E ++T    K F G
Sbjct: 245 YVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQSMLREVQNENVYTHAQCKSFIG 304

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
            +F+ +         + ++ D++L   ++ HLD Y DKF  +  M  KLF   QG  +++
Sbjct: 305 NLFRARFPEVPEWQPDEDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVE 364

Query: 361 SEDSIMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-AS 404
           + DS M+QE++  G LY +                L+K+ +   A++  + +    R A 
Sbjct: 365 NVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAG 424

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            +  A+ +FLATGN+++   + L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR
Sbjct: 425 GVGRAIESFLATGNIAS--RTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMR 482

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++E RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS      ++  IP  L+ +GM+
Sbjct: 483 TTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPNLVKAIPKHLIDMGMM 542

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           PL+   + + E+  +V LDG+ +G+I    A  +V +LR  KI G  +P+ +EI ++  P
Sbjct: 543 PLSSR-RYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFG-TLPQMMEIGFI--P 598

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K  G +PGLYL TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH E
Sbjct: 599 FKKNGQFPGLYLATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLE 658

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L+KT F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTP +P
Sbjct: 659 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTP 718

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+K+ F+ 
Sbjct: 719 LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLT 778

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                          +   YF R P    L 
Sbjct: 779 LD------------------------------------------KKSSYFARHPHMPELI 796

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             L  DGL + G+KL+   P+Y Y+      Y   +   KE+  VE +R    F      
Sbjct: 797 KHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDLSPKK 856

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
           T     I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPS
Sbjct: 857 T---VAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPS 913

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 914 RMTIAMM 920



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 961  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004


>gi|194853433|ref|XP_001968165.1| GG24715 [Drosophila erecta]
 gi|190660032|gb|EDV57224.1| GG24715 [Drosophila erecta]
          Length = 1129

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/967 (44%), Positives = 581/967 (60%), Gaps = 105/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
           Q   + P L N +   F + P K +  L  LGAPH+ SFD ML  GLD   + + PI + 
Sbjct: 6   QQMKTIPVLTN-SRPEFKQIPKKLSRHLANLGAPHVDSFDEMLTLGLDNTAKHMIPIHWL 64

Query: 97  EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              G+ + + +    IS+PKVP   + +   + YPT++RQ    YSG  +V + W+ +G 
Sbjct: 65  SPAGEKISMKVESIWISKPKVPQDVIDVRTREIYPTDSRQLHISYSGMCSVRLGWTVNGV 124

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+SK C+L   +P ++++ GEH  EWGG F++ G+EK+VR+LI  
Sbjct: 125 EKSAINMDLGEVPIMLRSKACNLGQASPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMT 184

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
           RRNHPI +KR++WK+RG  FSDLG+ +++V+ DES+ +NV+H++ NG+A+FMFSH K + 
Sbjct: 185 RRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLS 244

Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
                                              C+  M++ +  E ++T    K F G
Sbjct: 245 YVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQSMLREVQNENVYTHAQCKSFIG 304

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
            +F+ +         + ++ D++L   ++ HLD   DKF  +  M  KLF   QG  +++
Sbjct: 305 NLFRARFPEVPEWQPDEDVTDFILRERVMIHLDTNEDKFQLIVFMIQKLFQCAQGKYKVE 364

Query: 361 SEDSIMLQEIMTGGSLY------------LQL---LKKEKSGTSAVLKESDIYAAFR-AS 404
           + DS M+QE++  G LY            LQ+   L+K+ +    +L  + +    R A 
Sbjct: 365 NVDSAMMQEVLLPGHLYQKYLGERVESWVLQVRRCLQKKLTSPDGLLTSAVMTQCMRQAG 424

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            +  ++ +FLATGN+++   + L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR
Sbjct: 425 GVGRSIESFLATGNIAS--RTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMR 482

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++E RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS     K++  IP  L+ +GM+
Sbjct: 483 TTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKQLIDMGMM 542

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           PL+     + ++  +V LDG+ +G+I    AT +V  LR  KI G  +P+ +EI ++  P
Sbjct: 543 PLSNR-SYLGDKLYVVFLDGKHLGHIYQSEATKIVDDLRYGKIFG-TLPQMMEIGFI--P 598

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K  G +PGLYL TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH E
Sbjct: 599 FKKNGQFPGLYLATGPARMMRPVWNLKWNRVEYIGTLEQLYMEIAIDSKEMYPDFTTHLE 658

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L+KT F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTPA+P
Sbjct: 659 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATP 718

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+K+ F+ 
Sbjct: 719 LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLT 778

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                          +   YF R P    L 
Sbjct: 779 LD------------------------------------------KKSSYFARHPHMPELV 796

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             L  DGL + G+KL+   P+Y Y+      Y   +   KE+  VE +R    F      
Sbjct: 797 KHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDLSPKK 856

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
           T     I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPS
Sbjct: 857 T---VAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPS 913

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 914 RMTIAMM 920



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 961  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004


>gi|17136446|ref|NP_476708.1| RNA polymerase I 135kD subunit [Drosophila melanogaster]
 gi|78099796|sp|P20028.2|RPA2_DROME RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
           polymerase I subunit 2; AltName: Full=RPA135
 gi|7296211|gb|AAF51503.1| RNA polymerase I 135kD subunit [Drosophila melanogaster]
 gi|18447630|gb|AAL68376.1| SD02110p [Drosophila melanogaster]
 gi|220947372|gb|ACL86229.1| RpI135-PA [synthetic construct]
          Length = 1129

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/968 (44%), Positives = 582/968 (60%), Gaps = 107/968 (11%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
           Q   + P L N +   F + P K +  L  LG PH+ SFD ML  GLD + + + P  + 
Sbjct: 6   QQMKTIPVLTN-SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWL 64

Query: 97  EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              G+ + + +    I++PKVP   + +   + YPT++RQ    YSG  +V + WS +G 
Sbjct: 65  SPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGV 124

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+SK C+L   TP ++++ GEH  EWGG F++ G+EK+VR+LI  
Sbjct: 125 QKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMT 184

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
           RRNHPI +KR++WK+RG  FSDLG+ +++V+ DES+ +NV+H++ NG+A+FMFSH K + 
Sbjct: 185 RRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLS 244

Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
                                              C+  M++ +  E ++T    K F G
Sbjct: 245 YVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIG 304

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
            +F+ +         + ++ D++L   ++ HLD Y DKF  +  M  KLF   QG  +++
Sbjct: 305 NLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVE 364

Query: 361 SEDSIMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-AS 404
           + DS M+QE++  G LY +                L+K+ +   A++  + +    R A 
Sbjct: 365 NVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAG 424

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            +  A+ +FLATGN+++   + L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR
Sbjct: 425 GVGRAIESFLATGNIAS--RTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMR 482

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++E RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS     K++  IP  L+ +GM+
Sbjct: 483 TTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMM 542

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           PL+   + + E+  +V LDG+ +G+I    A  +V +LR  KI G  +P+ +EI ++  P
Sbjct: 543 PLSNR-RYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFG-TLPQMMEIGFI--P 598

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K  G +PGLY+ TGP RM+RPV NL    +E+IGT EQ++M+I I  KE YP  TTH E
Sbjct: 599 FKKNGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLE 658

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L+KT F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTP +P
Sbjct: 659 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTP 718

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+K+ F+ 
Sbjct: 719 LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLT 778

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                          +   YF R P    L 
Sbjct: 779 LD------------------------------------------KKSSYFARHPHMPELI 796

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             L  DGL + G+KL+   P+Y Y+      Y   +   KE+  VE +R    F     +
Sbjct: 797 KHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSF----DL 852

Query: 885 TP-NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +P     I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFP
Sbjct: 853 SPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFP 912

Query: 944 SRMTIGFL 951
           SRMTI  +
Sbjct: 913 SRMTIAMM 920



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 961  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004


>gi|8474|emb|CAA35185.1| RNA polymerase 3, second largest subunit [Drosophila melanogaster]
          Length = 1129

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/968 (44%), Positives = 582/968 (60%), Gaps = 107/968 (11%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
           Q   + P L N +   F + P K +  L  LG PH+ SFD ML  GLD + + + P  + 
Sbjct: 6   QQMKTIPVLTN-SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWL 64

Query: 97  EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              G+ + + +    I++PKVP   + +   + YPT++RQ    YSG  +V + WS +G 
Sbjct: 65  SPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGV 124

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+SK C+L   TP ++++ GEH  EWGG F++ G+EK+VR+LI  
Sbjct: 125 QKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMT 184

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
           RRNHPI +KR++WK+RG  FSDLG+ +++V+ DES+ +NV+H++ NG+A+FMFSH K + 
Sbjct: 185 RRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLS 244

Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
                                              C+  M++ +  E ++T    K F G
Sbjct: 245 YVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIG 304

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
            +F+ +         + ++ D++L   ++ HLD Y DKF  +  M  KLF   QG  +++
Sbjct: 305 NLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVE 364

Query: 361 SEDSIMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-AS 404
           + DS M+QE++  G LY +                L+K+ +   A++  + +    R A 
Sbjct: 365 NVDSSMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAG 424

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            +  A+ +FLATGN+++   + L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR
Sbjct: 425 GVGRAIESFLATGNIAS--RTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMR 482

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++E RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS     K++  IP  L+ +GM+
Sbjct: 483 TTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMM 542

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           PL+   + + E+  +V LDG+ +G+I    A  +V +LR  KI G  +P+ +EI ++  P
Sbjct: 543 PLSNR-RYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFG-TLPQMMEIGFI--P 598

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K  G +PGLY+ TGP R++RPV NL    +E+IGT EQ++M+I I  KE YP  TTH E
Sbjct: 599 FKKNGQFPGLYIATGPARLMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLE 658

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L+KT F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTP +P
Sbjct: 659 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTP 718

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
            FRPVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+K+ F+ 
Sbjct: 719 LFRPVHYDIIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLT 778

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                                          +   YF R P    L 
Sbjct: 779 LD------------------------------------------KKSSYFARHPHMPELI 796

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             L  DGL + G+KL+   P+Y Y+      Y   +   KE+  VE +R    F     +
Sbjct: 797 KHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSF----DL 852

Query: 885 TPN-CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +P     I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFP
Sbjct: 853 SPTKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFP 912

Query: 944 SRMTIGFL 951
           SRMTI  +
Sbjct: 913 SRMTIAMM 920



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 961  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004


>gi|195147244|ref|XP_002014590.1| GL18874 [Drosophila persimilis]
 gi|194106543|gb|EDW28586.1| GL18874 [Drosophila persimilis]
          Length = 1127

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/967 (43%), Positives = 563/967 (58%), Gaps = 116/967 (11%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKT 102
           P L N +   F   P + N+ L  LGAPH+ SFD ML  GLD   + +  I+ +   G+ 
Sbjct: 9   PVLTN-SRPEFKAIPKQLNKHLANLGAPHVDSFDEMLTVGLDFVAKHMPAIQMQSPAGER 67

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + L +    I++P+VP   + +   + YPT++RQ  + YSG  +V +AWS +G       
Sbjct: 68  ISLKVENIWIAKPQVPQDVIDVRTREIYPTDSRQLHASYSGMCSVRLAWSVNGLQKTPIN 127

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
            ++G VP+ML+SK C+L   TP ++++ GEH  EWGG F++ G+EK+VR+L+  RRNHPI
Sbjct: 128 MDLGEVPVMLRSKACNLGKGTPQEMVKHGEHDTEWGGIFVIRGNEKIVRMLVLVRRNHPI 187

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
            +KR+ WK+RG  FSDLG+ +++V+ DE + +NVLH++ NG+ARFMFSH K +       
Sbjct: 188 CVKRSTWKDRGQNFSDLGIMVQTVRDDECSFSNVLHYLNNGTARFMFSHIKRLSYVPVCL 247

Query: 276 ---CLLG--------------------------MMQSLHEEGIHTQHDSKVFFGQIFKEK 306
              CL+                           M++ +H EG++T    +V         
Sbjct: 248 ILKCLMDYTDEEIYNRLVQGYEKDQYYVSSVQTMLRDVHNEGVYTHAQCRVLHWHPLPVS 307

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTCKLFHVVQGMVQLDSE 362
           LQ   R                  HL   W          S          +   +  + 
Sbjct: 308 LQRRARVAARRGRHRLYSART---HLGSPWTPTKRSSSSSSLWCRSSSSAPRASTRWKTL 364

Query: 363 DSIMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-ASSI 406
              M+QE++  G LY +               +L+K+ S   ++L  S +  + R A  +
Sbjct: 365 TRPMMQEVLLPGHLYQKYLGERIENWVAMVRRVLQKKLSTPDSLLTSSILTQSMRQAGGV 424

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
             ++ +FLATGN+++  N+ L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF  MR++
Sbjct: 425 GKSIESFLATGNIAS--NTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTT 482

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
           E RQL  DAWGFICPVHTPDGTPCGLLNHLT  C+IS+    K++  IP  L+ +GMLPL
Sbjct: 483 EARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISKRPDPKLVQAIPPKLIEMGMLPL 542

Query: 527 TPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           +   Q  P+  + +V+LDG+ +G+I    A  +V  LR  KI G  +P+ +EI ++  P 
Sbjct: 543 S--CQRNPDSKMYVVLLDGKHLGHIFQSDACKIVEDLRYEKITG-AVPQMMEIGFI--PF 597

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHREL 645
           K  G +PGLYL TGP RM+RPV N+    +E+IGT EQ++M+I I  KE YP  TTH EL
Sbjct: 598 KKNGQFPGLYLSTGPARMMRPVWNIKWKQVEYIGTLEQLYMEIAIDPKEMYPDFTTHLEL 657

Query: 646 SKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPF 705
           +KT F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW  Q   KLYRLQTP +P 
Sbjct: 658 AKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPL 717

Query: 706 FRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIEL 765
           FRPVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NKS+YERGFA+G I+KS F++L
Sbjct: 718 FRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFVQL 777

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
                                                      +   YF R P    L  
Sbjct: 778 P------------------------------------------KKSSYFARHPHMPELAK 795

Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
            L  DGL + GAKL    P+Y Y+      Y   +   KEE  V+ +R    F     +T
Sbjct: 796 YLDTDGLPHPGAKLTFGCPLYCYFDGEVATYKVEKMDEKEECFVDSIRQLGSF----DLT 851

Query: 886 P-NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
           P     I  R+ R  T+GDKFASRAGQKGICS K+PAEDLPFT+SG++PDIVFNPHGFPS
Sbjct: 852 PKKTVCITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGMIPDIVFNPHGFPS 911

Query: 945 RMTIGFL 951
           RMTI  +
Sbjct: 912 RMTIAMM 918



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE +YSGVDG  M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 959  GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1002


>gi|260809401|ref|XP_002599494.1| hypothetical protein BRAFLDRAFT_223894 [Branchiostoma floridae]
 gi|229284773|gb|EEN55506.1| hypothetical protein BRAFLDRAFT_223894 [Branchiostoma floridae]
          Length = 1140

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/968 (41%), Positives = 558/968 (57%), Gaps = 98/968 (10%)

Query: 40  TLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY 99
           T   PSL+NLT   +G+P   Q+  L  L  PH+ SF++ L EGL LAV+ I  ++F + 
Sbjct: 6   TEEVPSLRNLTKARYGRPEKTQHRPLQDLVRPHVESFNWFLREGLSLAVQAIPKLDFSLS 65

Query: 100 -GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            G+ + L+ V A++  P V  G       K YP E R+  + Y       +AWS DG   
Sbjct: 66  NGRRISLSYVDASVGVPTVAQGNTFSRTLKVYPAECRERGTTYRAGLQARIAWSVDGVNQ 125

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
           G+  + +G +P+M+KS  C++  LTPA+LI+R E  +E GGYFI  G EK+VR+L+  RR
Sbjct: 126 GSVERMLGEIPLMVKSAHCNITKLTPAELIQRHEEAEEMGGYFINNGIEKVVRMLVMPRR 185

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM--- 275
           N+P+AI R +WK RG L+++ GV +R V +D++A   VLH++TNG+    F ++K     
Sbjct: 186 NYPMAIVRPSWKGRGKLYTEYGVSMRCVTKDQTAATIVLHYLTNGTVTLCFVYKKEQFFV 245

Query: 276 ---------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQI 302
                                            C+  M++    EG+ TQ     + G+ 
Sbjct: 246 PLIIILKALVETTDQHIYSELIKGKEDNSFFKGCVASMLRQAQNEGLMTQAGILKYIGER 305

Query: 303 FKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
           F+ KL     + +E E+  ++L  C+  HLD  WDKF  L  MT KLF + +G   ++++
Sbjct: 306 FRVKLPVPDWYTDE-EVGQFLLRQCVCIHLDSDWDKFNTLVLMTQKLFALAKGECSVENQ 364

Query: 363 DSIMLQEIMTGGSLYLQLLK-----------------KEKSGTSAVLKESDIYAAFR-AS 404
           DS M+QE++  G LYL +LK                  +  G S  L   ++ +A R  S
Sbjct: 365 DSPMMQEMLLAGHLYLTILKDKLELWLTQLRYGIDKRSQDKGPSYKLDTVEMMSAMRLCS 424

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            +   M +F+ATG+V +  N  L LMQ +G  ++A+ +N MRY+SHFR VHRG++F EMR
Sbjct: 425 DVTRGMEHFMATGSVVSKSN--LGLMQTAGLTVVADKLNFMRYLSHFRCVHRGAFFAEMR 482

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++  R+L  +AWGF+CPVHTPDG PCGLLNH+T +C+     P+ V   IP +L SLGM 
Sbjct: 483 TTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHMTASCEAVTLQPTTV--HIPKLLCSLGMA 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKR 583
           PL     + P     V+LDGR+VG +   +A  +  KLRMLK+  E KIP   EIV + +
Sbjct: 541 PLDSPAPAPPVDCYTVLLDGRVVGRVAANMAPDMARKLRMLKVTREGKIPVMTEIVLVPK 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K    +PGL+LFT P RM+RPV NL  G +E IG+FEQV+M+IC+  +EA+PG+TTH+
Sbjct: 601 TGKA-SQFPGLFLFTTPARMMRPVRNLFTGTVEMIGSFEQVYMNICVRPEEAHPGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL +T  LS  A+  P  D NQSPRNMYQCQMGKQTMGTP   + ++   KLYR+Q P S
Sbjct: 660 ELRETSILSVAASFTPFSDFNQSPRNMYQCQMGKQTMGTPLHAFGHRTDNKLYRIQNPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD   MD++P+GTNA+VAVISYTGYDMEDAMILNKSS ERGF HG I+K+  I
Sbjct: 720 PTVRPYAYDHYHMDDYPLGTNAVVAVISYTGYDMEDAMILNKSSLERGFGHGTIYKTEII 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            L                      AQ   G V                  FG    +K +
Sbjct: 780 SLRD-------------------LAQSARGPVTL---------------VFGCAEGDKRV 805

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
           E +L  DGL  +G+KL   DP YSY  +         Y  +E+  V+ +++     + G+
Sbjct: 806 EGRLDDDGLPPIGSKLETGDPFYSYVDKQTGEARVVLYKNQEKAIVDNIKVLG--NDQGT 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
              N   I  RI RNP +GDKF+SR GQKG+CS +WP ED+PFT+ G+ PDI+FNPHGFP
Sbjct: 864 SDMNKVAIVMRINRNPIIGDKFSSRHGQKGVCSQQWPVEDMPFTEGGMTPDIIFNPHGFP 923

Query: 944 SRMTIGFL 951
           SRMTIG +
Sbjct: 924 SRMTIGMM 931



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD-----------Y 813
            +E+GYNYYG E MYSGV G   +A IF GVV+YQRLRHMV+DK+Q +             
Sbjct: 969  IEAGYNYYGHERMYSGVTGVEFEADIFIGVVYYQRLRHMVADKFQVRTTGPIDIVTHQPI 1028

Query: 814  FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
             GR  A      ++  D L+  GA    +D +++   +S  R  T
Sbjct: 1029 KGRKRAGGIRFGEMERDSLLAHGATFLLQDRLFNCSDKSTCRVCT 1073


>gi|291244544|ref|XP_002742157.1| PREDICTED: RNA polymerase I polypeptide B-like [Saccoglossus
           kowalevskii]
          Length = 1133

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/970 (40%), Positives = 566/970 (58%), Gaps = 105/970 (10%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-Y 99
           ++AP  ++LT+ N+GKPP  Q++ L  L  PHI SF+FML EGL+LA++D+ P+EF +  
Sbjct: 1   MAAPGFRHLTEPNYGKPPKSQSKVLQELVKPHIESFNFMLSEGLNLAIQDMQPVEFALPS 60

Query: 100 GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           G+ + L+   A+I  P V  G +     K YPTE RQ  + Y       + W  + +   
Sbjct: 61  GEKVSLSFTDASIGVPTVAQGNIHALSLKVYPTECRQGGTTYKAKIRAHLCWKLNNEVKA 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
                +G VPI++KS  C+L  L+P++LI++ E  +E GGYFI+ G EK++R+++  RRN
Sbjct: 121 IKEILLGEVPILVKSNSCNLNKLSPSELIKKNEEVEEMGGYFIINGIEKVIRMIVLPRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
            P+A+ R +WKNRG L+++ GV +R VK D++A N +LH++TNG+A   FS+ K      
Sbjct: 181 FPMALNRGSWKNRGKLYTEYGVSMRCVKPDQTAVNIILHYLTNGTAMLCFSYSKEQFFVP 240

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C+  M++ +  +G+ +Q     + G++F
Sbjct: 241 VVLILKALVDTTDQFIYDELMRGKDKNTYYKGCVTYMLRQIQTQGLTSQRKILEYLGEMF 300

Query: 304 KEKLQ----YDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
           + KL     Y  R   E     +++  CI  HL +  DKF  L +M  KLF    G    
Sbjct: 301 RVKLGLADWYTDRQNGE-----FLIKQCICVHLTNNMDKFNTLVYMVRKLFAFANGECAA 355

Query: 360 DSEDSIMLQEIMTGGSLYLQLLKKEK-----------------SGTSAVLKESDIYAAFR 402
           ++ DS M QE++ GG LYL  LK++                   G S VL  + + +A  
Sbjct: 356 ENADSTMNQEVLMGGHLYLMYLKEKMVDWLVSVRYSIEKQAKVKGQSFVLNSTTLNSAVG 415

Query: 403 ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
            +++  A+   L TGN+++   + L LMQA+G  ++A+ +N +RY+SHFR +HRG++F E
Sbjct: 416 RTNLSHAVEYLLKTGNLNS--KTGLGLMQATGLTVVADKLNYVRYLSHFRCIHRGAFFSE 473

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           MR++  R+L  +AWGF+CPVHTPDG PCGLLNH+   CQ+    P   ++ +  +L +LG
Sbjct: 474 MRTTSVRRLLPEAWGFLCPVHTPDGAPCGLLNHMAALCQVVNDQPQ--VSHLSRLLCNLG 531

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYL 581
           M P        P +   V+LDGR++G +  ++A  L  KLR+LK+  E ++P+ LE+V +
Sbjct: 532 MTPTDGPSPGEPSECYDVLLDGRVLGKVDKEMAGELGNKLRILKVRKEHRVPEMLEVVLV 591

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
               K    YPGLYLF+   R++RPV+NLA    E IGTFEQV+M+I +T  EA+ G+TT
Sbjct: 592 PMTGK-CSQYPGLYLFSSVARLMRPVLNLATNTTEMIGTFEQVYMNIAVTASEAHEGLTT 650

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H ELS++  LS +A+L P  D NQSPRNMYQCQMGKQTMGTP   + ++   KLYRLQTP
Sbjct: 651 HLELSESGLLSAVASLTPFSDFNQSPRNMYQCQMGKQTMGTPVHTYLHRTDNKLYRLQTP 710

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            SP  RP  YDT ++DN+P+GTNA+VAVISYTGYDMEDAMILNKSSYERGFAHG I+K+ 
Sbjct: 711 QSPIVRPCSYDTYNIDNYPLGTNAVVAVISYTGYDMEDAMILNKSSYERGFAHGTIYKTE 770

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            I+L+            SG  G  +   + FG +                      P ++
Sbjct: 771 VIDLKK----------ISGEKGKSI--SLMFGCL----------------------PDDR 796

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
             E  L  DGL  +GA +   DP+  Y     N   T  +   E   V+ V++     + 
Sbjct: 797 RTEGHLDLDGLPPIGAIIEPGDPLCGYINVETNVANTLSFKHHERAVVDNVKLCG--NDL 854

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           G+      YI  RIQRNPT+GDKF+SR GQKG+CS  WP E++PF++SG+ PDI+FNPHG
Sbjct: 855 GTAECQKVYISLRIQRNPTIGDKFSSRHGQKGVCSQLWPVENMPFSESGMTPDIIFNPHG 914

Query: 942 FPSRMTIGFL 951
           FPSRMTIG +
Sbjct: 915 FPSRMTIGMM 924



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
            E+GYNYYG E MYSGVDG  ++A IF G+V+YQRLRHMV DK+Q +     D        
Sbjct: 963  EAGYNYYGNERMYSGVDGRELEADIFVGIVYYQRLRHMVEDKFQVRTTGPIDILTHQPVK 1022

Query: 826  KLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVE-------VVRMSS 876
                 G +  G    ERD + S+      ++R   C  S   ++C +       + +  S
Sbjct: 1023 GRKRAGGIRFGEM--ERDALLSHGTSFLLQDRLFHCSDSSTTQLCTKCGSFQGIIQQKKS 1080

Query: 877  GFTEGGSV 884
               EG SV
Sbjct: 1081 ALLEGSSV 1088


>gi|391330640|ref|XP_003739764.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Metaseiulus
           occidentalis]
          Length = 1151

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/965 (41%), Positives = 543/965 (56%), Gaps = 103/965 (10%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTL 103
           P L  + D NFG+ P  QN  L  +   H+ SFD+ ++EGLDL + +I P+EF +    +
Sbjct: 22  PCLSKIQDDNFGRIPKHQNAVLQEVAKAHLESFDWAMEEGLDLTLAEIEPLEFMVGKSRV 81

Query: 104 KLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK 163
           K+ + KA +  P V    V     + +P E R  R  Y G   +   W  +G      T+
Sbjct: 82  KIRVSKAEVHPPAVSKMAVNCRSLQIFPKECRIRRVTYRGRLELRFDWWLNGLKQEPITR 141

Query: 164 EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
             G +PIM+KS++C+L  ++P QLIERGE  +E+GGYF+V G+EK++RLLI  RRN+PIA
Sbjct: 142 SCGEIPIMVKSRKCNLHGMSPDQLIERGEELEEFGGYFVVNGNEKVLRLLIMQRRNYPIA 201

Query: 224 IKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM-------- 275
           + RN WK RG +FS+ GV +RS ++D S+ N VLH++TNG+ + M ++RK +        
Sbjct: 202 MARNGWKGRGSMFSEFGVSLRSCRKDHSSQNMVLHYLTNGTVQVMITNRKELYFVPIVLL 261

Query: 276 ----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKL 307
                                       C+  M++ + +E I T  D+K F G  F+ K+
Sbjct: 262 LKALVDKSDYEIYKSLIKGFEDDSFYKGCITNMLRLVQKENILTHQDAKEFIGDKFRIKV 321

Query: 308 QYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIML 367
            Y        ++CD +L  C+  HLDD   KF  +  M  KLF   +    L+S DS M 
Sbjct: 322 -YVPEWATNSDVCDKLLDRCVCVHLDDNESKFNLMCFMVRKLFAAAKNKCALESADSTMN 380

Query: 368 QEIMTGGSLYLQLLKKEKSG--------TSAVLKESD-----------IYAAFRASSIES 408
           QEI+  G LYL +LK++  G        T   L+  D             A   A  +  
Sbjct: 381 QEILLPGHLYLNVLKEKIEGLLLGVKLSTEKKLQRGDPNLANVNYSFMSNALGNAGDLTH 440

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
           AM  FL+TGN+ +   S L L Q SGF I+AE +N  RY+ HFR VHRGS+F +MR++  
Sbjct: 441 AMNYFLSTGNLIS--KSGLSLQQVSGFTIIAEKLNFWRYIGHFRCVHRGSFFMQMRTTSV 498

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLT 527
           R+L  +AWGF+CPVHTPDG PCGLL HL+  C+I  +  P+K + +    L +LGM+   
Sbjct: 499 RKLLPEAWGFLCPVHTPDGGPCGLLLHLSAMCEIVVKQYPTKPIVE---TLENLGMIEEN 555

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
                    +  V LDGR +G+I +     L   LR LK  G KI  +LEI  + R E+ 
Sbjct: 556 SPTSLDFRDSYQVQLDGRCLGWIHEDDVEKLHVTLRYLKASG-KIAPTLEICVIPRTEQN 614

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPG++LF+ P RM+RPV+N     +EWIGT EQV MDIC+  +EA+  +TTH+ELS+
Sbjct: 615 -SLYPGIFLFSTPARMMRPVLNNRTQAVEWIGTLEQVHMDICVVPEEAHE-LTTHQELSE 672

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
           T  LS LAN IP PD NQSPRNMYQCQMGKQTMG+P  ++R +   KLYRL  P S   R
Sbjct: 673 TAMLSILANQIPWPDFNQSPRNMYQCQMGKQTMGSPMHSYRNRADNKLYRLMNPQSALVR 732

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD   MD +P GTNAIVAVISYTGYDMEDAM+LNK S ERGF  GC++K        
Sbjct: 733 PTAYDHYKMDEYPSGTNAIVAVISYTGYDMEDAMVLNKMSVERGFKAGCVYK-------- 784

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD-KWQTKDYFGRDPANKALEDK 826
                 TET+                      LR +  D   QT   FGR   ++AL   
Sbjct: 785 ------TETV---------------------NLRKLAGDVGVQTSCVFGRKAGDEALAKF 817

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           +  DGL Y+G+++   DP+  Y   +  +    +Y   E   +  V++     + G+ T 
Sbjct: 818 VDYDGLPYIGSRVVHGDPVCCYINLTTGQLKVVKYHSSEPATIVEVKILG--NDCGTDTL 875

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
                 Y I R P +GDKFASRAGQKG+CS  WP E++PFT+SG+VPDI+FNPHGFPSRM
Sbjct: 876 QQVQFTYLIDRTPMIGDKFASRAGQKGVCSTLWPTENMPFTESGMVPDIIFNPHGFPSRM 935

Query: 947 TIGFL 951
           TIG +
Sbjct: 936 TIGMM 940



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDPA 819
            ++G+N++GTE +YSGVDG  M A IFFGVV+YQRLRHMV+DK+Q +     D   R P 
Sbjct: 979  KAGFNHHGTERIYSGVDGREMDADIFFGVVYYQRLRHMVADKYQVRTTGPIDSLTRQPV 1037


>gi|405955197|gb|EKC22403.1| DNA-directed RNA polymerase I subunit RPA2 [Crassostrea gigas]
          Length = 1142

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/970 (41%), Positives = 554/970 (57%), Gaps = 105/970 (10%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-Y 99
           L  PSL+NLT  ++G+    Q++ L  L  PHI SF+ ++  GL  AV+ I P++F +  
Sbjct: 5   LKEPSLRNLTTGDYGRLKPHQHQPLQDLTKPHIDSFNALIHGGLSRAVQTIPPVDFALPN 64

Query: 100 GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           G  +   ++ A IS P V  G       K YP E R+  S Y G  ++++ W  +G+  G
Sbjct: 65  GDRIAFKMLDATISYPTVDLGNKYAQTLKVYPAECRERGSSYLGSLSISMLWKVNGRIQG 124

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           T  +++  VPIM+KS  C+L  LTP +L+ RGE  +E GGYFI  G+EK++R+L+ +RRN
Sbjct: 125 TVERKIADVPIMVKSSVCNLNGLTPKELVRRGEEAEEMGGYFISNGNEKVIRMLVMSRRN 184

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
            P  I R +WKNRG  +++ GV +RSV  D    NNVLH+++NGSA   FSH+K M    
Sbjct: 185 FPTCINRPSWKNRGKQYTEYGVSLRSVGDDNIGVNNVLHYLSNGSASLCFSHQKEMFFVP 244

Query: 276 --------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                           C++ M++    E + TQ     + G+IF
Sbjct: 245 VVFILKALHNVTDKFIYDQLIQGKEDNSFYKGCVIAMLRHALSENLTTQKTVLAYMGEIF 304

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           + KL     + ++ ++ +Y++  CI  HLD+  DKF  L +MT KLF   +G    +S D
Sbjct: 305 RVKLSLPPWYTDQ-DVGEYLIKYCICVHLDNNIDKFHLLVYMTRKLFAFAKGECASESAD 363

Query: 364 SIMLQEIMTGGSLYLQLLK------------------KEKSGTSAVLKESDIYAAFR-AS 404
           + M QE++ GG LY  +LK                  K       VL E  +  A R  +
Sbjct: 364 NPMFQELLLGGQLYGMILKEKLHDWMISVKSSIDRTAKNYKEQEYVLTEVTMNDALRHTT 423

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
           +I  +M  F+A+G++ +   S L LMQ +G  ++A+ +N  RY+SHFR VHRGS+F EMR
Sbjct: 424 NITKSMEYFMASGSIHS--RSGLGLMQVTGLTVVADKLNFFRYISHFRCVHRGSFFSEMR 481

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC-QISEYIPSKVLAQIPSVLVSLGM 523
           ++  R+L  +AWGF+CPVHTPDG+PCGLLNHLT     ++ ++ +K LA   S+L S+G 
Sbjct: 482 TTAVRKLLPEAWGFLCPVHTPDGSPCGLLNHLTALAGAVTSHLSNKHLA---SLLFSMGT 538

Query: 524 LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLK 582
            P      +   +   V LDGRI+GY+ + IA S+  +LR +K+ G  K+P   EI  + 
Sbjct: 539 TPCDAPAMAPMSKCFTVFLDGRILGYLHEDIAQSVEKRLRFMKVKGLSKVPPMSEICLVP 598

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
           +  K    YPGLY+FT   RM+RPV NL     EWIGTFEQV+MDICIT +EA  G+TTH
Sbjct: 599 K-TKFASQYPGLYIFTSTARMIRPVWNLTTDCKEWIGTFEQVYMDICITPEEAIQGVTTH 657

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
           +ELS+   LS +A   P  D NQSPRNMYQCQMGKQTMG P      +   KLY+LQTP 
Sbjct: 658 QELSEVSMLSTVAQFTPFSDFNQSPRNMYQCQMGKQTMGFPVHALDRRADNKLYKLQTPQ 717

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
           SP  RPV YD  +MD +P+GTNAIVAV+SYTGYDMEDAMILNKSS+ERGFAH  I+KS  
Sbjct: 718 SPVVRPVMYDHYEMDTYPLGTNAIVAVMSYTGYDMEDAMILNKSSFERGFAHASIYKSQI 777

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
           I+L S ++            G ++Q                          FG  P N  
Sbjct: 778 IDLNSDHH------------GRILQI-------------------------FGCLPDNSH 800

Query: 823 -LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
            L D+L  +GL ++G  L   DP YS       +     Y+  E   V  ++     T  
Sbjct: 801 FLGDRLTKEGLPHIGTYLQRGDPFYSTINIQTGKSREYSYTSDEPAYVHQIKALGDTTGI 860

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
             ++  C  I  R++RNP +GDKF+SR GQKG+CS+ WP E++PFT+SG+ PDI+FNPHG
Sbjct: 861 QELSRVC--IVLRVKRNPIIGDKFSSRHGQKGVCSMMWPVENMPFTESGMTPDILFNPHG 918

Query: 942 FPSRMTIGFL 951
           +PSRMTIG +
Sbjct: 919 YPSRMTIGMM 928



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 7/126 (5%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GYNYYGTE M+SGV+G  ++A IF GVV+YQRLRHMVSDK+Q +     DP      
Sbjct: 966  VKAGYNYYGTERMFSGVNGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGPVDPLTHQPV 1025

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTEG- 881
                  G V  G    ERD + ++      ++R + C    K  +C     + S + E  
Sbjct: 1026 KGRKRGGGVRFGEM--ERDALIAHGTSYLLKDRLLDCSDVSKARVCTSCGSILSPYLEKL 1083

Query: 882  --GSVT 885
              GSVT
Sbjct: 1084 RMGSVT 1089


>gi|332028507|gb|EGI68546.1| DNA-directed RNA polymerase I subunit RPA2 [Acromyrmex echinatior]
          Length = 764

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/750 (48%), Positives = 490/750 (65%), Gaps = 65/750 (8%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           L  P L N T  NFGKPPDKQNE L +LG PHI SF++ML++GL  +++D  P+   +  
Sbjct: 2   LIEPKLTN-TSPNFGKPPDKQNELLQSLGVPHIDSFNYMLEDGLFYSLKDCTPVYLTLTN 60

Query: 101 K-TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
              + L +    I +P +P+  +G+   K YPTE RQ  S Y G     + WS +GK   
Sbjct: 61  SDKVVLWMDDVHIYKPTIPSSTIGVKTCKIYPTECRQRGSTYKGKIIARLGWSVNGKEQE 120

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
              K++G VPIM+KS RC+L N+ P +LI  GEH  EWGGYFI+ G E+L+R+LI  RRN
Sbjct: 121 PLEKDLGEVPIMVKSNRCNLNNMNPEELIAHGEHEQEWGGYFIIRGLERLIRMLIMTRRN 180

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---- 275
           +PIA+KR  WK RG  FS+LG+ +RSV+ D S+ NN LHFVT+GSA+  F+++K+     
Sbjct: 181 YPIAVKRPTWKGRGDHFSELGILLRSVREDNSSINNTLHFVTDGSAKLAFTYKKATYFVP 240

Query: 276 ------CLL--------------------------GMMQSLHEEGIHTQHDSKVFFGQIF 303
                 CL+                           M++++HEEG+H     K + G++F
Sbjct: 241 LILILKCLIDVTDLYIYKALIAGCEDDLYYNNSIINMLRAVHEEGLHWHEQCKAYIGKMF 300

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           K K         ++++CDY++  CI  HLD+  DKF  L  MT KLF +      ++  D
Sbjct: 301 KVKFSELPTDATDIDVCDYIIKYCISIHLDEPIDKFHLLVFMTKKLFTLANNKCAVEGAD 360

Query: 364 SIMLQEIMTGGSLYLQ----------------LLKKEKSG---TSAVLKESDIYAAFRAS 404
           ++M+QE + GG LYLQ                +LK++KS     S  ++E      FR S
Sbjct: 361 AVMMQECLLGGHLYLQVLKEKLYSWLVGLKHHILKRDKSAGNRYSLSIQEMLNVTKFR-S 419

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
           +I+S M  FL+TG+V +  +S L LMQ +G  I+ ENINRMRYMSHFRA+HRG++FQEMR
Sbjct: 420 NIDSQMEYFLSTGSVRS--SSGLGLMQTTGLTIVVENINRMRYMSHFRAIHRGAFFQEMR 477

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++E RQL  DAWGFICP+HTPDG PCGLLNHLT NC I+++   K+ A IP+VLV LGM+
Sbjct: 478 TTEARQLLPDAWGFICPIHTPDGAPCGLLNHLTMNCIITKHADPKLKAAIPAVLVDLGMI 537

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           PL+  I    + +  VMLDG+++G I D+I   +V KLR+LKI   +IP +LEI ++  P
Sbjct: 538 PLS--IADDWKNSYNVMLDGKLIGLIEDKIINKVVYKLRLLKIKSREIPSTLEIAFV--P 593

Query: 585 EKGM-GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
           +K +   YPGL+LFT   RM+RPV+NLA   IE IGTFEQ++M+IC+  +EAY G+TTH+
Sbjct: 594 KKNVPAQYPGLFLFTNAARMMRPVINLAMQKIELIGTFEQIYMEICVNPQEAYEGLTTHQ 653

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           E+S+T   SNLANLIP+PDCNQSPRNMYQCQMGKQTM TPC NW+ Q   K+YRLQTPA+
Sbjct: 654 EISQTTIFSNLANLIPLPDCNQSPRNMYQCQMGKQTMATPCHNWQQQSQTKMYRLQTPAT 713

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
           P FRPVHYD ++MD+F MGTNAI+AVI+YT
Sbjct: 714 PLFRPVHYDNINMDDFAMGTNAIIAVIAYT 743


>gi|33469941|ref|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Homo sapiens]
 gi|92090637|sp|Q9H9Y6.2|RPA2_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
           polymerase I subunit 2; AltName: Full=DNA-directed RNA
           polymerase I 135 kDa polypeptide; Short=RPA135
 gi|62420281|gb|AAX81999.1| unknown [Homo sapiens]
 gi|119593998|gb|EAW73592.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_c [Homo
           sapiens]
          Length = 1135

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/968 (41%), Positives = 551/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|34535223|dbj|BAC87247.1| unnamed protein product [Homo sapiens]
          Length = 1135

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/968 (41%), Positives = 550/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P    +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGGPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRRGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|221044264|dbj|BAH13809.1| unnamed protein product [Homo sapiens]
          Length = 1173

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/968 (41%), Positives = 551/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 46  RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 105

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 106 FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 164

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 165 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 224

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 225 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 284

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 285 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 344

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 345 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 403

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 404 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID 463

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 464 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 521

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 522 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 578

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 579 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 638

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 639 TGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 697

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 698 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 757

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 758 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 817

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 818 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 841

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 842 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 901

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 902 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 959

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 960 SRMTIGML 967



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 6/117 (5%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP-ANKALED 825
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD   N+ +  
Sbjct: 1007 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 1066

Query: 826  KLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
            +    G+ + G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1067 RNVQGGIRFGGM---ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1120


>gi|149023254|gb|EDL80148.1| RNA polymerase 1-2 [Rattus norvegicus]
          Length = 1135

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/968 (41%), Positives = 545/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++  PP++Q   L  L   H+ SF++ + EGL  AV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYAVPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV AAIS P VP G +    N  YP E R  RS Y G     ++W+ +G  
Sbjct: 68  FKDERISLTIVDAAISPPAVPKGTICKELN-IYPAECRGRRSTYRGKLTADISWAVNGVP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RGL ++  GV I  V+ + SA N  LH+V NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG HTQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + N  E  +++   CI  HL    DKF  L  MT KLF + +G    D+
Sbjct: 307 RFRVKLSLPDWYPN-AEAAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K    T+  +   ++   F   + 
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSMGTE 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  MQ SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGLLNHLT  C++ ++++ +   A IP++L  LG+ 
Sbjct: 484 TTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYT---ASIPALLCGLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+             V+LDG +VG++  ++A  +   LR  K++ E+ +P  +E+  +  
Sbjct: 541 PVDAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRVPPWMEVALIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E +GT EQ+FM+I I   E + G++TH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELVGTMEQLFMNIAIFEDEVFGGVSTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E    G D  +                            FG  P +  +
Sbjct: 780 DL--------SEKFKQGDDSLV----------------------------FGVKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP Y Y   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 MQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  +  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG++PDI+FNPHGFP
Sbjct: 864 F--KCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|224967092|ref|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus musculus]
 gi|341941989|sp|P70700.2|RPA2_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
           polymerase I subunit 2; AltName: Full=DNA-directed RNA
           polymerase I 135 kDa polypeptide; Short=RPA135
 gi|74137985|dbj|BAE25401.1| unnamed protein product [Mus musculus]
 gi|74194733|dbj|BAE25971.1| unnamed protein product [Mus musculus]
 gi|148696280|gb|EDL28227.1| RNA polymerase 1-2 [Mus musculus]
          Length = 1135

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/968 (41%), Positives = 547/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G PP++Q   L  L   H+ SF++   EGL  AV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPPEQQKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  +S Y G     ++W+ +G  
Sbjct: 68  FKDERISLTIVDAVISPPSVPKGTICKDLN-VYPAECRGRKSTYRGRLTADISWAVNGVP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RGL ++  GV +R V+ + SA N  LH+V NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG H+Q     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + N VE  +++L  CI  HL    DKF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLSLPDWYPN-VEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE+++ G L+L  LK               K     +  +   ++   F   + 
Sbjct: 366 PDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTE 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGLLNHLT  C++ ++++ +   A IP++L  LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYT---ASIPALLCGLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+             V+LDG +VG++   +A  +   LR  K++ EK IP  +E+  +  
Sbjct: 541 PVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + GI+TH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNVAIFEDEVFGGISTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E    G D  +                            FG  P +  +
Sbjct: 780 DL--------SEKFKQGEDNLV----------------------------FGVKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S   + GS
Sbjct: 804 MQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCS--NDMGS 861

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  RI RNPT+GDKFASR GQKGI S  WPAED+PFT+SG++PDI+FNPHGFP
Sbjct: 862 GKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       MCVE   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLE 1082


>gi|397465556|ref|XP_003804557.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Pan paniscus]
          Length = 1135

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/968 (41%), Positives = 550/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGITDSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|410337759|gb|JAA37826.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410337761|gb|JAA37827.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
          Length = 1135

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/968 (41%), Positives = 549/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP   E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPSREEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|38614338|gb|AAH60656.1| Polymerase (RNA) I polypeptide B [Mus musculus]
          Length = 1135

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/968 (41%), Positives = 546/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G PP++Q   L  L   H+ SF++   EGL  AV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPPEQQKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  +S Y G     ++W+ +G  
Sbjct: 68  FKDERISLTIVDAVISPPSVPKGTICKDLN-VYPAECRGRKSTYRGRLTADISWAVNGVP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RGL ++  GV +R V+ + SA N  LH+V NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG H+Q     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + N VE  +++L  CI  HL    DKF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLSLPDWYPN-VEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE+ + G L+L  LK               K     +  +   ++   F   + 
Sbjct: 366 PDSLVNQEVFSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTE 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGLLNHLT  C++ ++++ +   A IP++L  LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYT---ASIPALLCGLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+             V+LDG +VG++   +A  +   LR  K++ EK IP  +E+  +  
Sbjct: 541 PVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + GI+TH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNVAIFEDEVFGGISTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E    G D  +                            FG  P +  +
Sbjct: 780 DL--------SEKFKQGEDNLV----------------------------FGVKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S   + GS
Sbjct: 804 MQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCS--NDMGS 861

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  RI RNPT+GDKFASR GQKGI S  WPAED+PFT+SG++PDI+FNPHGFP
Sbjct: 862 GKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       MCVE   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLE 1082


>gi|114579600|ref|XP_001145399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 8
           [Pan troglodytes]
 gi|410228170|gb|JAA11304.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410261860|gb|JAA18896.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410261862|gb|JAA18897.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410303046|gb|JAA30123.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
 gi|410303048|gb|JAA30124.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
          Length = 1135

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/968 (41%), Positives = 550/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|332257256|ref|XP_003277725.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Nomascus leucogenys]
          Length = 1135

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/968 (41%), Positives = 550/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKTALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFT 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVN-IYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLHNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSVHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  +IA  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PVDGAPHRPYSECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLEMGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN++GTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFHGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|296223273|ref|XP_002807565.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
           subunit RPA2 [Callithrix jacchus]
          Length = 1165

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/968 (41%), Positives = 551/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  + PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 38  RNLPNGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 97

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  RS Y G   V V W+ +G +
Sbjct: 98  FKDQRISFTILDAVISPPTVPKGTICKEAS-VYPAECRGRRSTYRGKLTVDVNWAVNGIS 156

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LI+  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 157 KGIIKQSLGYVPIMVKSKLCNLHNLPPQALIQHHEEAEEMGGYFIINGIEKVIRMLIMPR 216

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  VK + SA N  LH++ NG+    F +RK +  
Sbjct: 217 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVKEEHSAVNMNLHYLENGTVMLNFIYRKELFF 276

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 277 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 336

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 337 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 395

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 396 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIVFDKKAQKTNLSMNTDNLMKIFTMGLD 455

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L L+QASG  ++A+ +N +RY+SHFR VHRGS F +MR+
Sbjct: 456 LTKPFEYLLATGNLRS--KTGLGLLQASGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRT 513

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +     IP++L +LG+ 
Sbjct: 514 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---TSIPALLCNLGVT 570

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+V +  
Sbjct: 571 PVDGAPHQPYSECYPVLLDGVMVGWVDKELALGIADSLRHFKVLREKRIPPWMEVVLIPM 630

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 631 TGKP-SLYPGLFLFTTPCRLIRPVQNLELGKEELIGTMEQIFMNVAIYEDEVFAGVTTHQ 689

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 690 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 749

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 750 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 809

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 810 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 833

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 834 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 893

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFP
Sbjct: 894 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 951

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 952 SRMTIGML 959



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 999  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1049


>gi|426336843|ref|XP_004031664.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Gorilla gorilla gorilla]
          Length = 1135

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/968 (41%), Positives = 550/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DTSLV---------------------------FGIKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|431913096|gb|ELK14846.1| DNA-directed RNA polymerase I subunit RPA2 [Pteropus alecto]
          Length = 1105

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/933 (42%), Positives = 543/933 (58%), Gaps = 70/933 (7%)

Query: 43  APSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT 102
            PSLK+LTD  +G P  +Q   L  L   H+ SF++ + EGL  AV+ I P EF    + 
Sbjct: 13  GPSLKHLTDPCYGVPRAQQKPALQKLTQAHVESFNYAVREGLGHAVQAIPPFEFAFKDER 72

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + L IV A IS P VP G +    +  YP E R  RS Y G     ++W+ +G + G   
Sbjct: 73  ISLTIVDAVISPPTVPKGSICKELS-VYPAECRGRRSTYRGKLTADISWAVNGVSKGVIK 131

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           + +G VPIM+KS  C+L  L P  LIE  E P+E GGYFI+ G EK++RLLI  RRN PI
Sbjct: 132 QFLGYVPIMVKSTLCNLHGLPPKALIEHHEEPEEMGGYFIINGIEKVIRLLIMPRRNFPI 191

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL---- 278
           A+ R  WK RG  ++  GV +  V+ + SATN  LH++ NG+    F +RK +  L    
Sbjct: 192 AMIRPKWKARGPGYTQYGVSMHCVRGEHSATNMNLHYLENGTVMLNFIYRKELFFLPLGF 251

Query: 279 --GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW 336
              M++ + +EG  TQ     + G+ F+ KL     + +E +  +++   CI  HL    
Sbjct: 252 ALKMLRVVMDEGCSTQKQVLGYLGERFRVKLSLPDWYPSE-QAAEFLFNQCICIHLKSNT 310

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK-------------- 382
           +KF  L  MT KLF + +G    ++ DS++ QE++T G L+L  LK              
Sbjct: 311 EKFYVLCFMTRKLFALARGECMEENPDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKLAI 370

Query: 383 -KEKSGTSAVLKESDIYAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
            K+   T+  L    +   F   + +       LATGN+ +   + L  +Q SG  ++A+
Sbjct: 371 DKKAQKTNVSLNTESLMKVFNLGTDLTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVAD 428

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
            +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C
Sbjct: 429 KLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVC 488

Query: 501 QI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
           ++ ++++ +   A IP++L SLG+ P+      +  +   V+LDG +VG++   +A S+ 
Sbjct: 489 EVVTQFVYT---ASIPALLCSLGVTPVDGAPHRLYTECYPVLLDGIMVGWVDKDLAPSVA 545

Query: 560 PKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWI 618
             LR  K++ EK IP  +E+V +    K   LYPGL+LFT P R++RPV N+  G+ E +
Sbjct: 546 ASLRRFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFTNPCRLVRPVQNVELGHEELV 604

Query: 619 GTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           GT EQVF++I +   E   G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQ
Sbjct: 605 GTMEQVFLNIAVFEAEVVVGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 664

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
           TMG P L +R +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDME
Sbjct: 665 TMGFPLLTYRDRSDNKLYRLQTPQSPLVRPRMYDHYDMDNYPIGTNAIVAVISYTGYDME 724

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DAM++NK+S+ERGFAHG ++KS FI+L        TE +  G D  +             
Sbjct: 725 DAMVVNKASWERGFAHGSVYKSEFIDL--------TEKVKQGDDSLV------------- 763

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
                          FG  P +     KL  DGL +VGA L   DP +SY          
Sbjct: 764 ---------------FGVKPGDPRTAQKLDSDGLPFVGAWLRYGDPYFSYVSLHSGDGAV 808

Query: 859 CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
             Y+ KE   V+ +++ S   + G+    C  I  R+ RNPT+GDKFASR GQKGI S  
Sbjct: 809 VLYTSKESCIVDNIKVCS--NDAGTGKFKCVCITVRVPRNPTIGDKFASRHGQKGILSRL 866

Query: 919 WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 867 WPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 899



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GY +YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD A       
Sbjct: 939  AGYAFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRATNQPVGG 998

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE---- 880
                G +  G    ERD + ++       +R   C       +CV    + S   E    
Sbjct: 999  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVRCGSLLSPLLEKPPP 1056

Query: 881  GGSVTPNCAYIGYRIQRNPTV 901
              S   N  Y     QR+ T+
Sbjct: 1057 AWSAMRNRKYSCTVCQRSDTI 1077


>gi|350581974|ref|XP_003124849.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Sus scrofa]
          Length = 1135

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/968 (41%), Positives = 547/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQAIPPFEFT 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV AAIS P VP G +    N  YP E R  RS Y G     ++W+ +G +
Sbjct: 68  FKDERISLTIVDAAISPPTVPKGSICKELN-IYPAECRGRRSTYRGRLTADISWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L +L+P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGVIKQFLGYVPIMVKSKLCNLYSLSPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCATQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ K+     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 307 RFRVKVNLPDWYPNE-QAAEFLFNECICIHLKSNTEKFYMLCLMTRKLFALAKGECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK               K+   TS  L   ++         
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKAQKTSVSLNTENLMKILNLGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L SLG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTATCEVVTQFVYT---ASIPALLCSLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG+   ++A S+   LR  K++ EK IP  +E+V +  
Sbjct: 541 PVDSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGLYLFT P R++RPV NL  G  E IGT EQ+FM++ I   E   G+TTH+
Sbjct: 601 TGKP-SLYPGLYLFTTPCRLVRPVQNLGLGREELIGTMEQIFMNVAIFEDEVLAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMILNK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D  +                            FG  P +  +
Sbjct: 780 DL--------SEKIKQGDDSLV----------------------------FGVRPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL +VGA+L   DP YSY   +        Y  KE   V+ +++    T  G 
Sbjct: 804 AQKLDDDGLPFVGAQLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGR 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|301781941|ref|XP_002926382.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           1 [Ailuropoda melanoleuca]
 gi|281347779|gb|EFB23363.1| hypothetical protein PANDA_016030 [Ailuropoda melanoleuca]
          Length = 1135

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/968 (41%), Positives = 547/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           QN  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+ I P EF 
Sbjct: 8   QNLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  RS Y G     ++W+ +G +
Sbjct: 68  FKDERISLTIVDAVISPPMVPKGNICKELN-IYPAECRGRRSTYRGKLTADISWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 RGIIKQFLGYVPIMVKSKLCNLHSLPPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN P+A+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPVAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLSLPDWYPNE-QAAEFLFDQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K    T+  +   ++   F   + 
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMKIFSLGTD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A +P++L SLG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASVPALLCSLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A S+   LR  K++ EK IP  +E+  +  
Sbjct: 541 PVDGAPHRPYAECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNIAIFEDEVLAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D  +                            FG  P +  +
Sbjct: 780 DL--------SEKIKQGDDSLV----------------------------FGVKPGDPRI 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|427782465|gb|JAA56684.1| Putative rna polymerase ii second largest subunit [Rhipicephalus
           pulchellus]
          Length = 1059

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/896 (42%), Positives = 530/896 (59%), Gaps = 100/896 (11%)

Query: 112 ISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIM 171
           I  P +    +G+   + YP E R   + Y G  +VTV WS +G    T  K VG VPIM
Sbjct: 6   IGSPMISKNTIGVVTPQVYPAECRNRGTTYRGKLDVTVVWSVNGVHQDTVKKTVGEVPIM 65

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           +KS+ C++  ++PA+L++RGE   E+GGYF+V G+EK++R+LI  RRN+PIA+ R +WKN
Sbjct: 66  VKSQVCNIAKMSPAELVKRGEEAGEFGGYFVVNGNEKIIRMLIMTRRNYPIAMVRPSWKN 125

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM---------------- 275
           RG +FS+ GV +RSVK D++ TN VLH++TNG+ + MFS+ K +                
Sbjct: 126 RGKMFSEYGVSLRSVKPDQTGTNMVLHYLTNGTVQVMFSYMKELFFMPVMMLLKALCDVS 185

Query: 276 --------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLN 315
                               C++ M++ +  EG+ T+   + + G+ F+  ++    + +
Sbjct: 186 DHHIYSELIAGKEEDSFFKGCIINMLRQVQNEGLLTRDQVRAYIGEKFRICMRLPEWYSD 245

Query: 316 EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
           E E+  ++L +CI  H +   DKF  +  M  KLF V +G   ++S D+ M  EI+  G 
Sbjct: 246 E-EVAVFLLRHCICVHTESNIDKFNLILLMIRKLFAVAKGECAIESTDNPMNHEILLAGH 304

Query: 376 LYLQLLKKEKSGTSAVLKES------DIYAAFRAS------------SIESAMTNFLATG 417
           LYL +LK++ SG    ++++         +AF+ S             + SAM  FLATG
Sbjct: 305 LYLMVLKEKLSGFLYSIRQNIEKKAKSTGSAFKLSMANFSRALATSWDLTSAMNYFLATG 364

Query: 418 NVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWG 477
           NV     + L LMQ +G  ++AE +N  RY+SHFR VHRG++F EMR++  R+L  +AWG
Sbjct: 365 NVVT--KTGLGLMQFTGTTVIAEKLNYWRYLSHFRCVHRGAFFAEMRTTTVRKLLPEAWG 422

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQISEY-IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ 536
           F+CPVHTPDG PCGLLNH+T   ++  +  P+     +PS+L  LGM PL  +  ++ E 
Sbjct: 423 FLCPVHTPDGAPCGLLNHMTALVEVVNHQFPT---GHLPSLLAGLGMAPLDGIRPNVAE- 478

Query: 537 ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLY 595
           + +V+LDGR++GY+ D    ++V  LR +K  G EK+P++LEI ++ +  +    YPG++
Sbjct: 479 SYVVVLDGRVLGYVEDSSVENMVTSLRTMKACGLEKVPQTLEIGFVPKTSQA-SQYPGVF 537

Query: 596 LFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLA 655
           LFT   RM+RPV+N+    IEWIGTFEQV + IC+   EAY GITTH+EL +T  LS LA
Sbjct: 538 LFTSVARMMRPVLNMRTDTIEWIGTFEQVHLSICVVRDEAYEGITTHQELRQTSMLSLLA 597

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
           N+IP  D NQSPRNMYQCQMGKQTMGTPC   RY+   KLYR+QTP +P  RP  YD  D
Sbjct: 598 NMIPYSDFNQSPRNMYQCQMGKQTMGTPCQALRYRSDNKLYRIQTPQTPLVRPTAYDHYD 657

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
           MD +P GTNAIVAVISYTGYDMEDAM+LNKSS ERGF HG I+KS  + L          
Sbjct: 658 MDEYPTGTNAIVAVISYTGYDMEDAMVLNKSSVERGFKHGSIYKSEVVNL---------- 707

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYV 835
                        ++  G V             Q    FGR   ++ LE  +  DGL Y+
Sbjct: 708 -------------RVLAGDV-----------GRQVSLVFGRKMTDRHLEGHIDLDGLPYI 743

Query: 836 GAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRI 895
           G K+    P+ S+           +Y   E   V  V++    T    +   C  I Y I
Sbjct: 744 GTKVEHNQPVCSFINIVTGETKVHKYKNMEAGYVHEVKLLGNDTGTDVLQAVC--ITYWI 801

Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           QRNP +GDKFASR GQKG+CS+  P E++PFT+SG+ PDI+FNPHGFPSRMTIG +
Sbjct: 802 QRNPMIGDKFASRHGQKGVCSLLLPVENMPFTESGMTPDIIFNPHGFPSRMTIGMM 857



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 52/78 (66%), Gaps = 11/78 (14%)

Query: 745 KSSYERGFAHGCI-FK--------SMFIEL--ESGYNYYGTETMYSGVDGSMMQAQIFFG 793
           KSS   G AH    FK          F EL  ++GYNYYGTE MYSGVDG  ++A IFFG
Sbjct: 864 KSSMLHGVAHDATPFKFSEDQPASEYFGELLQKAGYNYYGTERMYSGVDGRELEADIFFG 923

Query: 794 VVHYQRLRHMVSDKWQTK 811
           VV+YQRLRHMV+DK+Q +
Sbjct: 924 VVYYQRLRHMVADKYQVR 941


>gi|354471216|ref|XP_003497839.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Cricetulus griseus]
          Length = 1135

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/964 (41%), Positives = 542/964 (56%), Gaps = 100/964 (10%)

Query: 42  SAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
           S PSLK+LTD ++  PP++Q   L  L   H+ SF++ + EGL  AV+ I P EF    +
Sbjct: 12  SGPSLKHLTDPSYAIPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDE 71

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
            + L IV A IS P VP G +    N  YP E R  RS Y G     ++W+ +G   G  
Sbjct: 72  RISLTIVDAVISPPSVPKGTICKELN-VYPAECRGRRSTYRGRLTADISWAVNGVPKGVI 130

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN P
Sbjct: 131 KQFLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 190

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  WK+RGL ++  GV +  V+ + SA N  LH+V NG+    F +RK +  L   
Sbjct: 191 IAMIRPKWKSRGLGYTHFGVSMHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLG 250

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++++ EEG  TQ     + G+ F+ 
Sbjct: 251 FVLKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYLGERFRV 310

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + NE E   ++   CI  HL    +KF  L  MT KLF + +G    D+ DS+
Sbjct: 311 KLSLPEWYPNE-EAAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMEDNPDSL 369

Query: 366 MLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASSIESA 409
           + QE++T G L+L  LK               K    T+  +   ++   F   + +   
Sbjct: 370 VNQEVLTPGQLFLMFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSMGTELTRP 429

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
               LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 430 FEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 487

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGLLNHLT  C++ ++++ +   A +P++L  LG+ P+  
Sbjct: 488 RLLPESWGFLCPVHTPDGAPCGLLNHLTAICEVVTKFVYT---ASVPALLCGLGVTPVDA 544

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                      V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+  +    K 
Sbjct: 545 TPCRPYSDCYPVLLDGVMVGWVDKELAPDVADTLRRFKVLREKRIPPWMEVALVPMTGKP 604

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + GI+TH+EL  
Sbjct: 605 -SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQLFMNVAIFEDEVFSGISTHQELFP 663

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 664 HSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVR 723

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD   MDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L  
Sbjct: 724 PCMYDYYSMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-- 781

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E    G D  +                            FG  P +  +  KL
Sbjct: 782 ------SEKFKQGNDNLV----------------------------FGIKPGDPRVMQKL 807

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     
Sbjct: 808 DDDGLPFIGAKLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKF--K 865

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMT
Sbjct: 866 CICITIRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMT 925

Query: 948 IGFL 951
           IG L
Sbjct: 926 IGML 929



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|426223597|ref|XP_004005961.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Ovis aries]
          Length = 1135

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/967 (41%), Positives = 541/967 (55%), Gaps = 98/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+ + P EF 
Sbjct: 8   RNLPSGPSLKHLTDSSYGIPREQQKPALQELTRAHVESFNYAVSEGLSHAVQAVPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  RS Y G     ++WS +G +
Sbjct: 68  FKDERISLTIVDAVISPPAVPKGSICKELN-VYPAECRGRRSTYRGKLTADISWSVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGVIKQFLGYVPIMVKSKLCNLYSLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 307 RFRVKLNLPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-S 405
            DS+M QE++T G L+L  LK               K+   T+  L   ++   F     
Sbjct: 366 PDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSLGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++     S   A IP++L SLG+ P
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEV--VTQSVYTASIPALLCSLGVTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG ++G+   +IA  +   LR  K++ EK IP  +E+V +   
Sbjct: 542 VDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVVLIPMT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGLYLFT P R++RPV NL  G  E IGT EQ+FM++ I   E   G+TTH+E
Sbjct: 602 GKP-SLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVLAGVTTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP
Sbjct: 661 LFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+
Sbjct: 721 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG    +  + 
Sbjct: 781 L--------SEKIKQGDDSLV----------------------------FGVKAGDPRVM 804

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G  
Sbjct: 805 QKLDDDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF 864

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 865 --KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 923 RMTIGML 929



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|75062001|sp|Q5REE8.1|RPA2_PONAB RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
           polymerase I subunit 2; AltName: Full=RPA135
 gi|55726171|emb|CAH89859.1| hypothetical protein [Pongo abelii]
          Length = 1136

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/968 (41%), Positives = 549/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  R  Y G     ++W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVS-VYPAECRGRRCTYRGKLTADISWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKTRGPGYTHYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A  +   LR  K++ EK IP   E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGMKPGDPRI 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|55728623|emb|CAH91052.1| hypothetical protein [Pongo abelii]
          Length = 1135

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/968 (41%), Positives = 547/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  R  Y G     ++W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVS-VYPAECRGRRCTYRGKLTADISWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKTRGPGYTHFGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGLLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A  +   LR  K++ EK IP   E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG  +KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSAYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGMKPGDPRI 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ ++  S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKACSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 69/149 (46%), Gaps = 15/149 (10%)

Query: 745  KSSYERGFAHGC---IFKSMFIELE--------SGYNYYGTETMYSGVDGSMMQAQIFFG 793
            KS+   G  HG    IF      LE        +GYN+YGTE +YSG+ G  ++A IF G
Sbjct: 936  KSAALHGLCHGATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIG 995

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES- 852
            VV+YQRLRHMVSDK+Q +    RD             G +  G    ERD + ++     
Sbjct: 996  VVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEM--ERDALLAHGTSFL 1053

Query: 853  -ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
              +R   C       +CV+   + S   E
Sbjct: 1054 LHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|207457737|ref|NP_001128800.1| DNA-directed RNA polymerase I subunit RPA2 [Pongo abelii]
          Length = 1135

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/968 (41%), Positives = 549/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  R  Y G     ++W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVS-VYPAECRGRRCTYRGKLTADISWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKTRGPGYTHYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A  +   LR  K++ EK IP   E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGMKPGDPRI 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|359321637|ref|XP_003639648.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           1 [Canis lupus familiaris]
          Length = 1135

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/967 (41%), Positives = 541/967 (55%), Gaps = 98/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           QN  S PSLK+LT+ ++G P ++Q   L  L   H+ SF++ + EGL  AV+ I P EF 
Sbjct: 8   QNLPSGPSLKHLTNPSYGIPQEQQKPALQELTRAHVESFNYAVREGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  RS Y G     ++W+ +G +
Sbjct: 68  FKDERISLTIVDAVISPPMVPKGNICKELN-IYPAECRGRRSTYRGKLTADISWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G +PIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYIPIMVKSKLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 RFRVKLSLPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K    T+  +   ++   F   + 
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMRIFNLGTD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++         A +P++L SLG+ P
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEV--VTQCVYTASVPTLLCSLGVTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG +VG++  ++A S+   LR  K++ EK IP  +E+  +   
Sbjct: 542 VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIAESLRHFKVLKEKRIPPWMEVALIPMT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+TTH+E
Sbjct: 602 GKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNIAIFEDEVLAGVTTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP
Sbjct: 661 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+
Sbjct: 721 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 781 L--------SEKIKQGDDSLV----------------------------FGVKPGDPRIL 804

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G  
Sbjct: 805 QKLDDDGLPFIGARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNGRF 864

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 865 --KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 923 RMTIGML 929



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|440910777|gb|ELR60535.1| DNA-directed RNA polymerase I subunit RPA2 [Bos grunniens mutus]
          Length = 1135

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/967 (41%), Positives = 541/967 (55%), Gaps = 98/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+ + P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQAVPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  RS Y G     ++WS +G +
Sbjct: 68  FKDERICLTIVDAVISPPAVPKGSICKELN-VYPAECRGRRSTYRGKLTADISWSVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGVIKQFLGYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 307 RFRVKLSLPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-S 405
            DS+M QE++T G L+L  LK               K+   T+  L   ++   F     
Sbjct: 366 PDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNNENLMKIFSLGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++     S   A IP++L +LG+ P
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEV--VTQSVYTASIPALLCNLGVTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG ++G+   +IA  +   LR  K++ EK IP  +E+  +   
Sbjct: 542 VDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVALIPMT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGLYLFT P R++RPV NL  G  E IGT EQ+FM++ I   E   G+TTH+E
Sbjct: 602 GKP-SLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVLAGVTTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP
Sbjct: 661 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+
Sbjct: 721 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 781 L--------SERIKQGDDSLV----------------------------FGVKPGDPRVL 804

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G  
Sbjct: 805 QKLDDDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF 864

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 865 --KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 923 RMTIGML 929



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|402891932|ref|XP_003909182.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Papio anubis]
          Length = 1135

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/968 (41%), Positives = 550/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S P+LK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPTLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVS-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQCLGYVPIMVKSKLCNLHSLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PVDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|149727186|ref|XP_001495511.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Equus caballus]
          Length = 1135

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/967 (41%), Positives = 540/967 (55%), Gaps = 98/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S P+LK+LTD  +G P ++Q   L  L   H+ SF++ + EGL  AV+ I P EF 
Sbjct: 8   RNLPSGPTLKHLTDPLYGIPQEQQKPALQELTRAHVESFNYAVREGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    +  YP E R  RS Y G     ++WS +G  
Sbjct: 68  FKDERISLTIVDAVISPPTVPKGSICKDLS-IYPAECRGRRSTYRGKLTADISWSVNGIP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIALTRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFVYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVTEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     +  + +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 307 RFRVKLNLPDWY-PDAQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K+   T   +   ++   F   + 
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKIALDKKAQKTDVSINTDNLMKIFNLGTD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++         A +P++L SLG+ P
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQF--AYTASVPALLCSLGVTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG +VG++  ++A S+   LR  K++ EK IP  +E+  +   
Sbjct: 542 VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPMT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E + G+TTH+E
Sbjct: 602 GKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQIFMNIAIFEDEVFAGVTTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L +R +   KLYRLQTP SP
Sbjct: 661 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYRDRSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+
Sbjct: 721 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 781 L--------SEKIKQGDDSLV----------------------------FGVKPGDPRIV 804

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G  
Sbjct: 805 QKLDDDGLPFIGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKF 864

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 865 --KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 922

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 923 RMTIGML 929



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|154152065|ref|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
 gi|151553633|gb|AAI48065.1| POLR1B protein [Bos taurus]
 gi|296482453|tpg|DAA24568.1| TPA: DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
          Length = 1135

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/967 (41%), Positives = 541/967 (55%), Gaps = 98/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+ + P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQAVPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  RS Y G     ++WS +G +
Sbjct: 68  FKDERICLTIVDAVISPPAVPKGSICKELN-VYPAECRGRRSTYRGKLTADISWSVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGVIKQFLGYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 307 RFRVKLSLPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-S 405
            DS+M QE++T G L+L  LK               K+   T+  L   ++   F     
Sbjct: 366 PDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSLGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++     S   A IP++L +LG+ P
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEV--VTQSVYTASIPALLCNLGVTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG ++G+   +IA  +   LR  K++ EK IP  +E+  +   
Sbjct: 542 VDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVALIPMT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGLYLFT P R++RPV NL  G  E IGT EQ+FM++ I   E   G+TTH+E
Sbjct: 602 GKP-SLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVLAGVTTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP
Sbjct: 661 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+
Sbjct: 721 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 781 L--------SERIKQGDDSLV----------------------------FGVKPGDPRVL 804

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G  
Sbjct: 805 QKLDNDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGTGKF 864

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 865 --KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 922

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 923 RMTIGML 929



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE---- 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E    
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPP 1086

Query: 881  GGSVTPNCAYIGYRIQRNPTV 901
              S   N  YI     R+ T+
Sbjct: 1087 SWSALRNRKYICALCNRSDTI 1107


>gi|403303871|ref|XP_003942542.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Saimiri boliviensis boliviensis]
          Length = 1135

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/968 (41%), Positives = 550/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  + PSLK+LT+ ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPNGPSLKHLTEPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDQRISFTILDAVISPPTVPKGTICKEAS-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQSLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++L  CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTMGLD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRGS F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +     IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---TSIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A+ +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PVDGAPHRPYSECYPVLLDGVMVGWVDKELASGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIYEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG    +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKLGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|410929909|ref|XP_003978341.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
           [Takifugu rubripes]
          Length = 1134

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/967 (40%), Positives = 542/967 (56%), Gaps = 99/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N    PSLKNLTD  FG   + Q+  +  L   HI SFD  + +GL+  V+ I P++F 
Sbjct: 8   RNLPKCPSLKNLTDGKFGVLRENQDAAVQDLTKAHIESFDQAVTDGLNRVVQSIRPLDFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           +   T+ L+ V+A I +P V  G +    N  YP E R  R  Y G     ++WS +G  
Sbjct: 68  VKNDTVSLSFVEATILKPTVAKGTICSQMN-VYPAECRGRRCSYKGKLVADISWSINGIP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G +PIM+KS+ C+L  LTP +L+E  E  +E GGYFIV G EK++R+LI  R
Sbjct: 127 KGIIKQSLGHLPIMVKSQLCNLHGLTPRELVEHHEEAEEMGGYFIVNGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM-- 275
           RN+PIA+ R  WK+RG  ++  G+ +R VK D +A N  LH++ NG+    F ++K +  
Sbjct: 187 RNYPIAMSRPKWKSRGQGYTQYGMAMRCVKDDHTAINMTLHYLDNGTVMLNFIYQKELFF 246

Query: 276 ----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQ 301
                                             C+  M++ + EEG  TQ     F G+
Sbjct: 247 LPLGFALKALVDFSDFHIYQELVKGREDNSFYKKCVTEMLRLVMEEGCITQSKVLNFLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ K+     + NE +    +L  C+  HL    +KF  L  MT KLF   +     ++
Sbjct: 307 RFRVKMNLPEWYTNE-QCAHILLDECVCIHLKTNVEKFYMLCLMTRKLFTFAKQECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFR----------------ASS 405
            DSI  QE++T G LYL  LK+  +     +K +    A R                 + 
Sbjct: 366 PDSITFQEVLTPGQLYLMFLKERMAAWLVSVKLAFEKKAARLNLSWNAENVMKIFNMGAD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           I  +    LATGN+S+   S L ++QA+G  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 ISKSFEYLLATGNLSS--KSGLGMLQATGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NH+T NC+I     S     +P++L SLG+ P
Sbjct: 484 TSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTANCEIVAQAVSTT--SLPALLCSLGVTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +             V+LDG +VG++  ++A ++V  LR  K++ EK IP   EIV + + 
Sbjct: 542 VDGAPGQAYSDCYPVLLDGAVVGWVESELAPAVVDSLRRFKVLKEKKIPAWTEIVLVPKT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYP L LFT P R++RPV NL+ G  E IGTFEQ++M++ I   E  PG+TTH+E
Sbjct: 602 GKP-SLYPALLLFTTPCRLMRPVQNLSVGRQELIGTFEQLYMNVGIFEDEVTPGVTTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P   +  +   KLYRLQTP SP
Sbjct: 661 LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHTFLDRSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  D+DN+P GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG I+K+  ++
Sbjct: 721 LVRPSMYDHYDLDNYPSGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSIYKTEVVD 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L                                +R+      K      FG  P    +E
Sbjct: 781 LA-------------------------------ERV------KGDDSVVFGTGPGGPGVE 803

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
           DKL  DGL ++G+ L   DP+YSY   +  + V C Y  +E   V+ +++ S     G  
Sbjct: 804 DKLDADGLPHIGSVLRHGDPLYSYINLNTGQSVICYYRSQEACVVDNIKICSNDNGSGRF 863

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+ PDI+FNPHGFPS
Sbjct: 864 KRVC--ITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMCPDILFNPHGFPS 921

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 922 RMTIGML 928



 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 969  GYNYYGTERLYSGLSGEELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGR 1028

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
              +G +  G    ERD + ++       +R   C      ++CV+   + S   E
Sbjct: 1029 NVEGGIRFGEM--ERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLLE 1081


>gi|291386319|ref|XP_002709637.1| PREDICTED: RNA polymerase I polypeptide B isoform 1 [Oryctolagus
           cuniculus]
          Length = 1135

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/964 (40%), Positives = 544/964 (56%), Gaps = 100/964 (10%)

Query: 42  SAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
           S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+ IAP EF    +
Sbjct: 12  SGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVREGLGHAVQAIAPFEFAFKDE 71

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
            + L IV A IS P VP G +   FN  YP E R  RS Y G     ++W+ +G + G  
Sbjct: 72  RITLTIVDAVISPPTVPKGTICREFN-VYPAECRGRRSTYRGKLTADISWAVNGTSKGVI 130

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+L NL+P  LIE  E  +E GGYFI+ G EK++R+LI  RRN P
Sbjct: 131 KQFLGHVPIMVKSKLCNLYNLSPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 190

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  W++RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L   
Sbjct: 191 IAMVRPKWRSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLG 250

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++ + EEG  TQ     + G+ F+ 
Sbjct: 251 FALKALVSFSDYQIFQELIKGKEADSFFRNSVSQMLRIVAEEGCFTQKQVLNYLGECFRV 310

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++ DS+
Sbjct: 311 KLNLPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYLLCLMTRKLFALAKGECMEENPDSL 369

Query: 366 MLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASSIESA 409
           + QE++T G L+L  LK               K+   T+  +   ++   F   + +   
Sbjct: 370 VNQEVLTPGQLFLMFLKEKMEAWLTSIKIALDKKAQKTNISINTENLLKVFSMGADLTRP 429

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
               LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 430 FEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 487

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +     IP +L SLG+ P+  
Sbjct: 488 RLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQFVYT---TSIPPLLCSLGVTPIDG 544

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                  +   V+LDG +VG++  ++A  +   LR+ K++ EK IP  +E+  +    K 
Sbjct: 545 APHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRLFKVLREKRIPPWMEVALVPMTGKP 604

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGLYLFT P R++RPV NL  G  E IGT EQ+F+++ I   E   G+TTH+EL  
Sbjct: 605 -SLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQLFLNVAIFEDEVLAGVTTHQELFP 663

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 664 HSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVR 723

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD  DMDN+P+GTNAIVAV SYTGYDMEDAMI+NK+S+ERGFAHG ++K+ FI+L  
Sbjct: 724 PYMYDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGFAHGSVYKTEFIDL-- 781

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E +  G D  +                            FG  P +  +  +L
Sbjct: 782 ------SEKIKQGDDSLV----------------------------FGVKPGDPRILQRL 807

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++G KL   DP Y Y   +        Y  KE   V+ +++ S  T  G     
Sbjct: 808 DDDGLPFIGTKLQYGDPYYGYLNLNTGESFVVYYKSKENCIVDNIKVCSNDTGSGKF--K 865

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPSRMT
Sbjct: 866 CICITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMT 925

Query: 948 IGFL 951
           IG L
Sbjct: 926 IGML 929



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSIAHVCVECGSLLSPLLE 1082


>gi|386780981|ref|NP_001247552.1| DNA-directed RNA polymerase I subunit RPA2 [Macaca mulatta]
 gi|355751581|gb|EHH55836.1| hypothetical protein EGM_05119 [Macaca fascicularis]
 gi|380817102|gb|AFE80425.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca
           mulatta]
 gi|383422125|gb|AFH34276.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca
           mulatta]
 gi|384949774|gb|AFI38492.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca
           mulatta]
          Length = 1135

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/968 (40%), Positives = 549/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S P+LK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPTLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVS-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLHSLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  G+ +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGISMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G 
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGG 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PVDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRI 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|270012190|gb|EFA08638.1| hypothetical protein TcasGA2_TC006301 [Tribolium castaneum]
          Length = 848

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/688 (51%), Positives = 454/688 (65%), Gaps = 65/688 (9%)

Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
           M+++LH E +HT  D KV+ G++F+ K       L + EI D++L  CI+ HLD   DKF
Sbjct: 1   MLRNLHIENLHTHEDCKVYLGKMFRVKFYECPDWLTDSEIADFILKKCIMIHLDKPEDKF 60

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG-----TSAVLKE 394
             L  M  KLF  VQ   + +  D++M+QE++ GG LYLQL+K+   G      S +LK 
Sbjct: 61  NMLVFMCQKLFVFVQDKCKPEGADAVMMQELLLGGHLYLQLIKERLQGWLFGLKSNILKR 120

Query: 395 SD-----------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           S            + AA R+  +E+A   FLATGN+++  +S L LMQ  G  I+AENIN
Sbjct: 121 SSTLTGHLSQTEILQAAKRSGGLENAFEMFLATGNITS--SSGLGLMQDKGLTIVAENIN 178

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
           RMRYMSHF+AVHRG++FQEMR++E RQL  DAWGFICPVHTPDG PCGLLNHLTTNC ++
Sbjct: 179 RMRYMSHFKAVHRGAFFQEMRTTEVRQLLPDAWGFICPVHTPDGAPCGLLNHLTTNCSVT 238

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
           +   ++ +  IP +L  LGM+ L  V     +Q  +V+LDGR++GY+   +A  LV +LR
Sbjct: 239 DVPDARKVENIPIILTRLGMVALKYVASVGFDQNYVVVLDGRVLGYVRRDLAPKLVEQLR 298

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
           + KI GE++P +LEIV L    K    +PGLYLFTGP RM+RP++NL    +E++GTFEQ
Sbjct: 299 LCKIKGEEVPNTLEIV-LVPLMKVTAQFPGLYLFTGPARMMRPLLNLKTKEVEFVGTFEQ 357

Query: 624 VFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
           V+MDIC++  E Y G+TTH ELSK  FLSNLA LIPMPDCNQSPRNMYQCQMGKQTMGTP
Sbjct: 358 VYMDICVSPDEYYKGVTTHMELSKLAFLSNLAQLIPMPDCNQSPRNMYQCQMGKQTMGTP 417

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
           C NWR Q   KLYRLQTPA+P FRPVHYD +++D+F MGTNAIVAVISYTGYDMEDAMI+
Sbjct: 418 CHNWRSQSETKLYRLQTPATPLFRPVHYDNINLDDFAMGTNAIVAVISYTGYDMEDAMII 477

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           NK++ ERGFAHG I+K+ F+ LE                                     
Sbjct: 478 NKAADERGFAHGSIYKTEFVTLE------------------------------------- 500

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
                    YF R+P    L + L  DGL  +G ++ + DP+Y Y+   E+ Y   ++SG
Sbjct: 501 -----HESSYFCRNPEKPELAEFLDTDGLPIIGRRMKDGDPLYCYYSVDESVYKVTKFSG 555

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
           KEE  V++V++ + F      T   A   +R+ RNP VGDKFASRAGQKGICS KWP ED
Sbjct: 556 KEECFVDMVKLCASF----ETTNRTACFTFRVPRNPNVGDKFASRAGQKGICSQKWPMED 611

Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           LPFT++GLVPDIVFNPHGFPSRMTI  +
Sbjct: 612 LPFTETGLVPDIVFNPHGFPSRMTIAMM 639



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 43/56 (76%), Gaps = 5/56 (8%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
           GYNYYGTETMYSG+DG  M AQIFFG+VHYQRLRHMVSDKWQ +     D   R P
Sbjct: 680 GYNYYGTETMYSGIDGREMTAQIFFGIVHYQRLRHMVSDKWQVRSTGPTDILTRQP 735


>gi|1621594|gb|AAC52850.1| second largest subunit of RNA polymerase I [Mus musculus]
          Length = 1135

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/975 (41%), Positives = 542/975 (55%), Gaps = 114/975 (11%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G PP++Q   L  L   H+ SF++   EGL  AV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPPEQQKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  +S Y G     ++W+ +G  
Sbjct: 68  FKDERISLTIVDAVISPPSVPKGTICKDLN-VYPAECRGRKSTYRGRLTADISWAVNGVP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN P+A+ R  WK+RGL ++  GV +R V+ + SA N  LH+V NG+    F +RK +  
Sbjct: 187 RNFPVAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG H+Q     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + N VE  +++L   I  HL    DKF     MT KLF + +G    D+
Sbjct: 307 CFRVKLSLPDWYPN-VEAAEFLLNQGICIHLQSNTDKFYLRCLMTRKLFALARGECMDDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTN--------- 412
            DS++ QE+++ G L+L  LK++       +K   I    RA     ++ N         
Sbjct: 366 PDSLVNQEVLSPGQLFLMFLKEKMENWLVSIK---IVLDKRAQKANVSINNENLMKIFSM 422

Query: 413 ----------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
                      LATGN+ +   + L  ++ SG  ++A+ +N +RY+SHFR VHRG+ F +
Sbjct: 423 GTELTRPFEYLLATGNLRS--KTGLGFLEDSGLCVVADKLNFLRYLSHFRCVHRGAAFAK 480

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           MR++  R+L  ++WGF+CPVHTPDG PCGLLNHLT  C++         A IP++L  LG
Sbjct: 481 MRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFGDT--ASIPALLCGLG 538

Query: 523 ML-----PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSL 576
           +      P  P     P     V+LDG +VG++   +A  +   LR  K++ EK IP  +
Sbjct: 539 VTGADTAPCRPYSDCYP-----VLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWM 593

Query: 577 EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY 636
           E+  +    K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E +
Sbjct: 594 EVALIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNVAIFEDEVF 652

Query: 637 PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
            GI+TH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLY
Sbjct: 653 GGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
           RLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG 
Sbjct: 713 RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           ++KS FI+L        +E    G D  +                            FG 
Sbjct: 773 VYKSEFIDL--------SEKFKQGEDNLV----------------------------FGV 796

Query: 817 DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
            P +  +  KL  DGL  +GAKL   DP YSY   +        Y  KE   V+ +++ S
Sbjct: 797 KPGDPRVMQKLDDDGLPSIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCS 856

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              + GS    C  I  RI RNPT+GDKFASR GQKGI S  WPAED+PFT+SG++PDI+
Sbjct: 857 --NDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDIL 914

Query: 937 FNPHGFPSRMTIGFL 951
           FNPHGFPSRMTIG L
Sbjct: 915 FNPHGFPSRMTIGML 929



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLE 1082


>gi|410955300|ref|XP_003984294.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Felis catus]
          Length = 1135

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/968 (41%), Positives = 547/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           Q+    PSLK+LTD  +G P ++Q   L  L   H+ SF++ + EGL  AV+ I P EF 
Sbjct: 8   QSLPKGPSLKHLTDPFYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  RS Y G     ++W+ +G +
Sbjct: 68  FKDERISLTIVDAVISPPMVPKGNICKELN-IYPAECRGRRSTYRGKLTADISWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGVIKQFLGYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVNFSDYQIFQELIKGKEEDSFFRNSISQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 307 CFRVKLSLPDWYPNE-QAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRAS---SIESAMTNF----- 413
            DS++ QE++T G L+L  LK++       +K +    A +A+   + E+ M  F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKIALDKRAQKANVSINTENLMKIFSMGTD 425

Query: 414 --------LATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
                   LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L SLG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCSLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+  +  
Sbjct: 541 PVDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGVADSLRHFKVLREKRIPPWMEVALIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNIAIFEDEVLAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D  +                            FG  P +  +
Sbjct: 780 DL--------SEKIKQGDDSLV----------------------------FGVKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GA+L   DP Y Y   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAQLKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PF++SG+VPDI+FNPHGFP
Sbjct: 864 F--KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFSESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLE 1082


>gi|417405959|gb|JAA49665.1| Putative rna polymerase ii second largest subunit [Desmodus
           rotundus]
          Length = 1135

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/964 (40%), Positives = 544/964 (56%), Gaps = 100/964 (10%)

Query: 42  SAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
           SAPSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+ I P EF    +
Sbjct: 12  SAPSLKHLTDPSYGVPREQQKPALQELTQAHVESFNYAVREGLSHAVQAIPPFEFAFKDE 71

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
            + L IV A IS P VP G +    N  YP E R  RS Y G     ++W+ +G + GT 
Sbjct: 72  RISLTIVDAVISPPTVPKGSICKELN-VYPAECRGRRSTYRGKLTADISWAVNGISKGTI 130

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+L  L+P  LIE  E P+E GGYFIV G EK++R+LI  RRN P
Sbjct: 131 KQFLGYVPIMVKSKLCNLYGLSPKALIEHHEEPEEMGGYFIVNGIEKVIRMLIMPRRNFP 190

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F ++K +  L   
Sbjct: 191 IAMIRPKWKARGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYQKELFFLPLG 250

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++ + +EG  TQ     + G+ F+ 
Sbjct: 251 FALKALVSFSDYQIFQELIKGKEDNSFFRNSVSQMLRIVMDEGCSTQKQVLDYLGERFRV 310

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + +E +    +   CI  HL    +KF  L  MT KLF + +G    D+ DS+
Sbjct: 311 KLGLPDWYSDE-QAAKCLFDQCICIHLKSNTEKFYILCLMTRKLFALAKGECMEDNPDSL 369

Query: 366 MLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASSIESA 409
           + QE++T G L+L  LK               K+   T+  +   ++       + +   
Sbjct: 370 VNQEVLTPGQLFLMFLKEKMEAWLVSIKIGLDKKAQKTNMSINTENLMKILNLGTDLTKP 429

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
               LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 430 FEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFVRYLSHFRCVHRGADFAKMRTTTVR 487

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A  P++L +LG+ P+  
Sbjct: 488 RLLPESWGFLCPVHTPDGEPCGLMNHLTATCEVVTQFVYT---ASSPALLCNLGVTPVDG 544

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                  +   V+LDG ++G++  ++A S+   LR  K++ EK IP  +E+  +    K 
Sbjct: 545 TPHRPHAECYPVLLDGVMIGWVDKELAPSVAASLRHFKVLREKRIPPWMEVALVPITGKP 604

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I +   E + G+TTH+EL  
Sbjct: 605 -SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQLFMNIAVFEDEVFAGVTTHQELFP 663

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 664 HSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVR 723

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD  DMDN+P+GTNA+VAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L  
Sbjct: 724 PCMYDHYDMDNYPIGTNAVVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-- 781

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E +  G D  +                            FG  P +     KL
Sbjct: 782 ------SEKIKQGDDSLV----------------------------FGVKPGDPRTVQKL 807

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G     
Sbjct: 808 DGDGLPFIGAQLQYGDPYYSYVNLNTGESSVMFYKSKENCIVDNIKVCSNDTGSGKF--K 865

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  RI RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+ PDI+FNPHGFPSRMT
Sbjct: 866 CVCITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMAPDILFNPHGFPSRMT 925

Query: 948 IGFL 951
           IG L
Sbjct: 926 IGML 929



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 969  AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019


>gi|432103058|gb|ELK30392.1| DNA-directed RNA polymerase I subunit RPA2 [Myotis davidii]
          Length = 1137

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/965 (41%), Positives = 544/965 (56%), Gaps = 102/965 (10%)

Query: 43  APSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAV--EDIAPIEFEIYG 100
            PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV    I P EF    
Sbjct: 13  GPSLKHLTDPSYGIPREQQKPALQELTQAHVESFNYAVREGLSHAVGRRAIPPFEFAFKD 72

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
           + + L IV A IS P VP G +    N  YP E R  RS Y G     ++W+ +G + GT
Sbjct: 73  ERISLTIVDAVISPPTVPKGSICKELN-VYPAECRGRRSTYRGKLTADISWAVNGISKGT 131

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
             + +G VPIM+KSK C+L NL P  LIE  E P+E GGYFI+ G EK++R+LI  RRN 
Sbjct: 132 IKQFLGYVPIMVKSKLCNLYNLPPKALIEHHEEPEEMGGYFIINGIEKVIRMLIMPRRNF 191

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL-- 278
           PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F ++K +  L  
Sbjct: 192 PIAMIRPKWKARGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYQKELFFLPL 251

Query: 279 ----------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFK 304
                                              M++ + EEG  TQ     + G+ F+
Sbjct: 252 GFALKALVSFSDYQIFQELIKGKEDNSFLRNSVTQMLRMVMEEGCSTQKQVLNYLGERFR 311

Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
            KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++ DS
Sbjct: 312 VKLSLPDWYSNE-QAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDS 370

Query: 365 IMLQEIMTGGSLYLQLLKKEKSGTSAVLKES-DIYAAFRASSIESA-------------- 409
           ++ QE++T G L+L  LK++       +K   D  A     SI S               
Sbjct: 371 LVNQEVLTPGQLFLMFLKEKMEAWLVSVKIGMDKKAQKTNMSINSENLMKILSLGIDLTK 430

Query: 410 -MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
                LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  
Sbjct: 431 PFEYLLATGNLRS--KTGLGFLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTV 488

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLT 527
           R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ P+ 
Sbjct: 489 RRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQFVYT---ASIPALLCNLGVTPVD 545

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEK 586
                   +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+  +    K
Sbjct: 546 GTPHRPYAECYPVLLDGVMVGWVDKELAAGVAASLRHFKVLREKRIPPWMEVALVPMTGK 605

Query: 587 GMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
              LYPGLYLFT P R++RPV NL  G  E IGT EQ+FM+I I   E + G+TTH+EL 
Sbjct: 606 P-SLYPGLYLFTTPCRLVRPVRNLELGKEELIGTMEQLFMNIAIFEDEVFAGLTTHQELF 664

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  
Sbjct: 665 PHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLV 724

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L 
Sbjct: 725 RPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL- 783

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                  +E +  G D  +                            FG  P +     K
Sbjct: 784 -------SEKIKQGDDSLV----------------------------FGVKPGDPRTVQK 808

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           L  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S   + GS   
Sbjct: 809 LDEDGLPFIGAQLQYGDPYYSYVNLNTGESSVMFYKSKENCIVDNIKVCS--NDSGSGKF 866

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
            C  I  RI RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPSRM
Sbjct: 867 KCVCITMRIPRNPTIGDKFASRHGQKGILSRLWPTEDMPFTESGMVPDILFNPHGFPSRM 926

Query: 947 TIGFL 951
           TIG L
Sbjct: 927 TIGML 931



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 971  AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1021


>gi|444710488|gb|ELW51468.1| DNA-directed RNA polymerase I subunit RPA2 [Tupaia chinensis]
          Length = 1135

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/968 (40%), Positives = 539/968 (55%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N    PSLK+LTD ++G P  +Q   L  L   H+ SF++ + EGL  AV+ I P EF 
Sbjct: 8   RNLPGGPSLKHLTDPSYGIPRAQQKAALQELTRAHVESFNYAVREGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FNNERISLTIVDAVISPPTVPKGTICKELN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KS+ C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSQLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMVRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVNFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVVEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 307 CFRVKLNLTDWYSNE-QAAEFLFDQCICIHLKSSTEKFYVLCLMTRKLFALAKGECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K    T+  +   ++   F   + 
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKIALDKRAQKTNVSINTENLMRIFNLGTD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFVRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +     IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQFVYT---TSIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+  +  
Sbjct: 541 PVDGAPHRPYSECYPVLLDGVMVGWVDKELAPGVADSLRHFKVLREKRIPPWMEVALIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNIAIFEDEVAAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  +MDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPYMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D  +                            FG  P +   
Sbjct: 780 DL--------SEKIKQGDDSLV----------------------------FGVKPGDPRT 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++G KL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGTKLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|443686693|gb|ELT89887.1| hypothetical protein CAPTEDRAFT_116144, partial [Capitella teleta]
          Length = 1114

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/948 (40%), Positives = 542/948 (57%), Gaps = 108/948 (11%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEPKVPAGPVG 123
           L  L  PHI SF+++L EGL+ AV+ I P+EF +  G+ + L+I  A+I  P VP   + 
Sbjct: 1   LQDLTKPHIDSFNYVLKEGLNTAVKRIEPLEFALPSGQRISLSIQNASILNPMVPQSNIY 60

Query: 124 IHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLT 183
               + +P E R+    Y G   + + WS DG+  G   + +G VPIM+KS  C++  + 
Sbjct: 61  ATTLRVFPAECRERGITYKGKLTLELNWSVDGRKFGPVERAIGDVPIMVKSNACNIVKMN 120

Query: 184 PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYI 243
           PA+L++ GE   E GGYFIV G+EK++R+LI  RRN+P+A+ R +WK+RG  +++ GV +
Sbjct: 121 PAELVQHGEEIQEMGGYFIVNGNEKVLRMLIMPRRNYPMALSRGSWKSRGPQYTEFGVQM 180

Query: 244 RSVKRDESATNNVLHFVTNGSARFMFSHRKSM---------------------------- 275
           R+V  D+++TN VLH++ +G+A   F   +                              
Sbjct: 181 RTVADDQTSTNLVLHYLNDGNAMLCFVLERQQFFVPLAVMLRALVDQPDHFIYSELVKGR 240

Query: 276 --------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNC 327
                   C+  M++ + EEG+ T+  +  + G+ F+ KL     +  ++++ ++++ +C
Sbjct: 241 EDNSYYKGCIASMLRQMQEEGLSTRAKTLQYLGKTFRVKLGLPDWY-TDLQVGEFLIRSC 299

Query: 328 ILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--- 384
           I  HL D  DKF  L  MT KL+ + +     +S D+ M QE +  G LYL +LK     
Sbjct: 300 ICIHLKDNVDKFNTLVFMTQKLYALTKHGCAAESADNPMFQEALVAGHLYLMVLKDRLKT 359

Query: 385 --KSGTSAVLKESDIYAAFR--------------ASSIESAMTNFLATGNVSAGKNSTLQ 428
             +S  S +LK+  +                      +  AM   LATGN++    STL 
Sbjct: 360 WLQSLKSVILKKVSMGKGVDMLTNPTSFCECMRMTQDVTKAMEFLLATGNLAT--KSTLG 417

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           LMQ  G  ++A+ +N  RY+SHFR +HRG++F EMR++  R+L  +A+GFICPVHTPDG+
Sbjct: 418 LMQMKGLAVLADKLNFYRYISHFRCIHRGAFFSEMRTTAVRRLLPEAYGFICPVHTPDGS 477

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNHLT  CQ+S   PS + +Q+P +L SLGMLP+   + +  E    V+LDG+++G
Sbjct: 478 PCGLLNHLTAECQVSCAPPSNLSSQLPQLLSSLGMLPMDAPLTAASEY-YNVLLDGKVLG 536

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKS---LEI-VYLKRPEKGMGLYPGLYLFTGPGRML 604
            I     +++  +LR LK+ G   P+    LEI + ++ P+     YPGL+LF+   R +
Sbjct: 537 RIHQDSVSNVADRLRALKVTGGNPPQVSPLLEIGLVMRTPQASQ--YPGLFLFSSCARFI 594

Query: 605 RPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
           RPV NL     E +G+FEQV+MDIC+T  EA PG+TTH++L +T  LS LAN  P  D N
Sbjct: 595 RPVTNLLHDKREMVGSFEQVYMDICVTASEAIPGVTTHQDLCETSMLSTLANFTPFSDFN 654

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRNMYQCQMGKQTMGTP     ++   KLYR+QTP SP  RP  YD  D+D +P GTN
Sbjct: 655 QSPRNMYQCQMGKQTMGTPLHALVHRADNKLYRIQTPQSPMVRPKVYDDYDVDEYPNGTN 714

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS-MFIELESGYNYYGTETMYSGVDG 783
           AIVAVISYTGYDMEDAMI+NKSSYERGFAHG ++KS +FI L   +    T + +SGV  
Sbjct: 715 AIVAVISYTGYDMEDAMIINKSSYERGFAHGSVYKSEVFILLLQFF----TLSCHSGVK- 769

Query: 784 SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD 843
                                             P +   E  L  DGL ++G  L    
Sbjct: 770 ----------------------------------PGDTLAEQHLDADGLPFIGRYLTSGS 795

Query: 844 PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
           P YSY           +Y   E   V+ +++ +       +   C  I  RI+RNP +GD
Sbjct: 796 PYYSYINVQTGESRVVKYKYDEPAYVQQIKLLAHDLSNTELQKVC--IVLRIRRNPIIGD 853

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKGICS KWP E++PFT+ G+ PDI+FNPHGFPSRMTIG +
Sbjct: 854 KFSSRHGQKGICSQKWPVENMPFTEGGITPDILFNPHGFPSRMTIGMM 901



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 40/46 (86%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           E+GYNYYGTE +YSGV+G + +A IF GVV+YQRLRHMVSDK+Q +
Sbjct: 940 EAGYNYYGTERLYSGVNGKLFEADIFTGVVYYQRLRHMVSDKFQVR 985


>gi|126303601|ref|XP_001373893.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           1 [Monodelphis domestica]
          Length = 1135

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/967 (40%), Positives = 538/967 (55%), Gaps = 98/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  + PSLK+LT+  +G P ++Q   L  L   HI SF++ + EGL  AV+ I P+EF 
Sbjct: 8   RNLPTGPSLKHLTEPGYGLPKEQQLPALQELTRAHIESFNYAMREGLSHAVQAIPPLEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A +S P VP G +     K YP E R  RS Y G     ++WS +G  
Sbjct: 68  FKDERITLAIVDAVVSPPMVPKGSICKEL-KVYPAECRGRRSTYRGKLTADISWSVNGNP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G +PIM+KS+ C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQSLGYIPIMVKSRLCNLYNLPPKSLIEHHEEAEEMGGYFIINGIEKIIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM-- 275
           RN PIA+ R  WK RG  ++  G+ +  V+ + +A N  LH++ NGS    F + K +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTHYGISMHCVRDEHTAINMNLHYLENGSVMVNFIYHKELFF 246

Query: 276 ----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQ 301
                                             C+  M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFVLKALVAFSDYQIFQELIKGREENSFFRNCVSQMLRVVMEEGCITQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + N V+  +++L  C+  HL    +KF  L  MT KLF   +     ++
Sbjct: 307 RFRVKLSLPDWYTN-VQAAEFLLNQCVCIHLKSNEEKFYVLCLMTRKLFTFAKEECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-S 405
            DS+M QE++T G L L  LK               K    T+  +   ++   F     
Sbjct: 366 PDSLMNQEVLTPGRLILMFLKEKMEAWLVSVKIALDKRAQKTNVSMNTENLMKIFSMGLD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +      FLATGN+ +   + L ++Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYFLATGNLRS--KTGLGMLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NH+T  C++     +   + I  +L SLG+ P
Sbjct: 484 TTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAICEV--VTQAVYTSSIAPLLCSLGVTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
                     +   VML+G +VG++   +A ++   LR  K++G+K IP   EIV + + 
Sbjct: 542 FDGTPSQPYSECYPVMLNGIMVGWVEKDLAPAITDSLRNFKVLGKKQIPPWTEIVLIPKT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P RM+RPV NL  G  E IGT EQ+FM+I I   E  PGITTH+E
Sbjct: 602 GKP-SLYPGLFLFTTPCRMIRPVQNLELGKEELIGTLEQIFMNIAIFENEIVPGITTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP
Sbjct: 661 LFPHSLLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++K+  I+
Sbjct: 721 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKTELID 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 781 L--------SEKIKQGDDSLV----------------------------FGVKPGDLRVL 804

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++G+ L   DP YSY   +        Y  KE   V+ +++ S  +  G  
Sbjct: 805 QKLDSDGLPHIGSLLKYGDPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDSGNGKF 864

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  RI RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 865 KSIC--ITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 922

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 923 RMTIGML 929



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|340378888|ref|XP_003387959.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Amphimedon
           queenslandica]
          Length = 1143

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/970 (40%), Positives = 545/970 (56%), Gaps = 107/970 (11%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
           QN    P LK+LT   FGK    Q E L  L   HI +FDF +DEGL  AVED+   E  
Sbjct: 10  QNKGRDPFLKHLTSGGFGKLNPHQIESLQALTRHHIEAFDFAVDEGLKYAVEDLRSRELL 69

Query: 97  EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
           +  G+ +++ I  A I  P +P   + +     YP+E R+    Y  P  +TV +  +  
Sbjct: 70  DPRGQKVEIFIENAEIGYPTLPESNIHVKSVNIYPSECRERGVSYKAPLMLTVTFMIEKS 129

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
              T    +G+VPIM+KS RC L  ++P +L++  E  +E GGYFI+ G+EKL+R+LI  
Sbjct: 130 IVNTVNVPMGQVPIMVKSNRCRLYGMSPEELVKHHEESEEMGGYFIINGNEKLLRMLIMP 189

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
           RRN+PIAI R +W  +    ++ G  +R VK+D++  N  LH+ +NGS    FS  K   
Sbjct: 190 RRNYPIAIIRPSWIGKVPFSTEYGCTMRCVKKDQTQCNMTLHYCSNGSLTLAFSRNKEQF 249

Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
                                              C+  M+     E + T+ D+  + G
Sbjct: 250 YMSIIYILKALISVSDLFIFTEMTKGKEDDAFLKGCVAAMLHDCQTE-VLTRADALRYLG 308

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
             F+ K         E EIC  ++ N I  HLD   DKF  L  M  K + +  G    +
Sbjct: 309 DRFRFKFNLPPWVTAE-EICHELIRNHICVHLDKNTDKFNMLIFMARKTYALANGQCMAE 367

Query: 361 SEDSIMLQEIMTGGSLYLQLLK--------------KEKSG-----TSAVLKESDIYAAF 401
           + DS M QEI+ GG LYL  LK              K K G     TSA+ +   I    
Sbjct: 368 TADSPMNQEILLGGHLYLMYLKVQLLLSLVSLLLFVKGKDGGFFEETSALKR---ILEPK 424

Query: 402 RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
           +   I + M  FLATG +    N+ L L Q SGF I+A+ +N  RY+SHFRAVHRG++F 
Sbjct: 425 KTVPIATIMETFLATGYLRT--NTGLNLQQMSGFSIVADKLNFFRYISHFRAVHRGAFFA 482

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           +M+S+E R+L  +AWGFICPVH+PDG PCGLLNHL++ CQ+   IP+  + ++P +L SL
Sbjct: 483 QMKSTEVRKLLPEAWGFICPVHSPDGAPCGLLNHLSSKCQVVTTIPN--VRKLPKLLSSL 540

Query: 522 GMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV-GEKIPKSLEIV 579
           GM+PL +P+       AL V+L+GR++G +        V +LR LK    +++P +LEI 
Sbjct: 541 GMIPLVSPLEVPSSSSALDVILNGRVLGVVKSSDTPRFVRQLRHLKATRTQEVPSTLEIG 600

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
           Y+  P    G +PG++LFT P RM+RPV+NLA   +E IG+FEQV+MDI ++  + +P +
Sbjct: 601 YV--PLSKGGQFPGIFLFTTPSRMMRPVINLATNTMELIGSFEQVYMDIAVSESDIHPNV 658

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
           TTH+E+S    LS +A+L P  D N SPRN+YQCQM KQTMGTP  ++ ++G  KLYRLQ
Sbjct: 659 TTHKEVSDDSILSAVASLTPFTDFNPSPRNIYQCQMAKQTMGTPTHSFGHRGDNKLYRLQ 718

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           TP +P  R   YD  D+DN+P+GTNAIVAVI+YTGYDMEDA+++N++S ERGF H  ++K
Sbjct: 719 TPQTPLVRTKFYDECDLDNYPLGTNAIVAVIAYTGYDMEDAIVINRASLERGFTHATVYK 778

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
           + FI+L    N     TMY                                   FG  P+
Sbjct: 779 NEFIDLSKKAN--DRNTMYQ----------------------------------FGTLPS 802

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
           NK   ++L  DGL +VG+ L E DP+YSY   + NR    RY  +E   VE V++    +
Sbjct: 803 NKIAYERLDEDGLPHVGSLLEEDDPLYSYIDLASNRVHVERYKSREPAYVEEVKLLG--S 860

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           E G        I  R+ RNP +GDKFASR GQKG+ S +WP EDLPF +SG+VPDI+FNP
Sbjct: 861 EKGDRPLERVSIKLRLNRNPAIGDKFASRHGQKGVLSWQWPVEDLPFCESGMVPDIIFNP 920

Query: 940 HGFPSRMTIG 949
           HGFPSRMT+G
Sbjct: 921 HGFPSRMTVG 930



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 39/46 (84%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG+E MYSG+DG   +  IFFGVV+YQRLRHMV+DK+Q +
Sbjct: 971  KAGYNYYGSERMYSGIDGREFEVDIFFGVVYYQRLRHMVADKYQVR 1016


>gi|348558603|ref|XP_003465107.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           1 [Cavia porcellus]
          Length = 1135

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/967 (41%), Positives = 535/967 (55%), Gaps = 98/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++  P  +Q   L  L   H+ SF++ + EGL  AV+ I   EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYRIPRAQQKAALQELTRAHVDSFNYAVCEGLSQAVQAIPSFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +    N  YP E R  +S Y G   V ++WS +G +
Sbjct: 68  FKDERISLTIVDAVISPPTVPKGTICREPN-VYPAECRGRKSTYRGRLTVDISWSVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 RGVIKQFLGYVPIMVKSKLCNLHNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  GV I  V+ D SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIALVRPKWKSRGPGYTQFGVSIHCVRGDHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGGSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 307 CFRIKLSLPDWYSNE-QAAEFLFNQCICIHLKSNTEKFHLLCFMTRKLFALAKGECLEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QEI+T G L+L  LK               K    T+  +   ++   F     
Sbjct: 366 PDSLVNQEILTPGQLFLMFLKEKMEAWLVSVKIALDKRAQKTNVSINTENLMKIFSMGGD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  MQ SG  ++A+ +N +RY+SHFR VHRG  F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGGDFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPV+TPDG PCGL+NHLT  C++           IP++L SLG+ P
Sbjct: 484 TTVRRLLPESWGFLCPVNTPDGAPCGLMNHLTAICEVVTQF--AYTTSIPALLCSLGVTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+  +   
Sbjct: 542 VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGVADSLRRFKVLREKRIPPWMEVALIPIT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   GITTH+E
Sbjct: 602 GKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNIAILEDEVCAGITTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQM KQTMG P L ++ +   KLYRLQTP SP
Sbjct: 661 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMSKQTMGFPLLTYQDRSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++K+ FI 
Sbjct: 721 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKTEFIN 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 781 L--------SEKIKQGDDSLV----------------------------FGVKPGDPRVM 804

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GAKL   DP Y Y   +        Y  KE   V+ +++ S   E GS 
Sbjct: 805 QKLDDDGLPFIGAKLQYGDPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCS--NESGSG 862

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG++PDI+FNPHGFPS
Sbjct: 863 KFKCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPS 922

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 923 RMTIGML 929



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLE 1082


>gi|344291448|ref|XP_003417447.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
           subunit RPA2-like [Loxodonta africana]
          Length = 1135

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/968 (40%), Positives = 545/968 (56%), Gaps = 100/968 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           QN  S  SLK+LTD  +    +++   L  L    ++  +F + EGL  AV+ I P EF 
Sbjct: 8   QNLPSGASLKHLTDPAYAIRGEQKXPALQELPRARLSPSNFAVREGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV A IS P VP G +     K YP E R  RS Y G     ++W+ +G +
Sbjct: 68  FKDERISLTIVDAVISSPTVPKGSICKEL-KVYPAECRGRRSTYRGKLTADISWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKVCNLHSLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RGL ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKSRGLGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIRGKEDDSFFRNSVSQMLRIVTEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL+   +KF  L  MT KLF + +G    ++
Sbjct: 307 CFRVKLNLPEWYPNE-QAAEFLFDQCICIHLNSNTEKFYVLCLMTRKLFALAKGECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRAS---SIESAMTNF----- 413
            DS+M QE++T G L+L  LK++       +K +    A + +   + E+ M  F     
Sbjct: 366 PDSLMNQEVLTPGQLFLMFLKEKMEAWLVSIKIAIDKKAQKINLSINTENLMKIFNMGTD 425

Query: 414 --------LATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
                   LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +     IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---TSIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+  +  
Sbjct: 541 PVDGAPHRPHSECYPVLLDGVMVGWVEKDLAPGIAESLRRFKVLREKRIPPWMEVALIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQVFM+I I   E + G+TTH+
Sbjct: 601 TGKP-NLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQVFMNIAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +A+ IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIASFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D  +                            FG  P +  +
Sbjct: 780 DL--------SEKIKQGDDSLV----------------------------FGVKPGDPRI 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 804 LQKLDDDGLPFIGAQLQYGDPYYSYLNLNTGENFVVYYKSKENCVVDNIKVCSNDTGSGK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 921

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 922 SRMTIGML 929



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGLELKADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|432901774|ref|XP_004076940.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Oryzias
           latipes]
          Length = 1135

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/969 (40%), Positives = 546/969 (56%), Gaps = 112/969 (11%)

Query: 43  APSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT 102
            PSLKNLTD  FGK  D+Q+  +  L   HI SFD  + +GL  AV+ I P+EF      
Sbjct: 13  GPSLKNLTDGGFGKLTDQQHAAIQDLTKAHIESFDQAVTDGLIRAVQAIPPLEFMSKNDQ 72

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + L+ V+AAI  P V  G +     K +P E R  R  Y G     ++W+ +G   G   
Sbjct: 73  ISLSFVEAAIYSPAVAKGSI-CRETKVFPAECRGRRCSYKGKLVADISWAINGVPKGIIK 131

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           + +G+VPIM+KS+ C+L  ++P +L++  E  +E GGYFIV G EK+VR+LI  RRN+PI
Sbjct: 132 QSLGQVPIMVKSRLCNLHGMSPKELVKHHEEAEEMGGYFIVNGIEKVVRMLIMPRRNYPI 191

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
           A+ R  WK+RG  ++  GV +R VK D +A N  LH++ NG+    F ++K +       
Sbjct: 192 AMSRPKWKSRGQGYTQYGVSMRCVKDDHTAINLNLHYLENGTVMLNFIYQKELFFLPLGF 251

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ + EEG  T+     + G+ F+ K
Sbjct: 252 ALKALVDFTDFQIYQELIKGREDNSFYKTCVSEMLRVVMEEGCTTRSKVLTYLGERFRVK 311

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
           L     + NE +  + +L  CI  HL    +KF  L  M+ KLF   +     ++ DSIM
Sbjct: 312 LNLPEWYTNE-QCANILLNECICIHLKSDTEKFYLLCLMSRKLFSHAKQECMEENPDSIM 370

Query: 367 LQEIMTGGSLYLQLLKK-------------EKSGTSAVLK----ESDIYAAFRASSIESA 409
            QE++T G LYL  LK+             +K G+    +    E+ I      S +   
Sbjct: 371 CQEVLTPGQLYLMFLKERMTAWLVSVKLSFDKRGSKVFARGWSTENVIKMLNMGSDVTKP 430

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
               LATGN+++   + L ++Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 431 FEYLLATGNLNS--KTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVR 488

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV 529
           +L  ++WGF+CPVHTPDG PCGL+NH+T +C++     S     +P++L SLG+ P    
Sbjct: 489 KLLPESWGFLCPVHTPDGEPCGLMNHMTASCEV--VAASSPTTSLPALLCSLGVTP---- 542

Query: 530 IQSIPEQALM----VMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRP 584
           +   P QA      V+LDG +VG++   +A ++V  +R  K++ E K+P   EIV + + 
Sbjct: 543 VDGTPAQAFSDCYPVVLDGSVVGWVETDLAPAVVDAMRRFKVLRERKVPPWTEIVLVPKT 602

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P RM+RPV NLA G  E+IGTFEQ++ ++ I  +E   G+TTH+E
Sbjct: 603 GKA-SLYPGLFLFTTPCRMMRPVQNLALGKQEFIGTFEQLYTNVGILEEEIEAGVTTHQE 661

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P  ++  +   KLYRLQTP S 
Sbjct: 662 LFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSA 721

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  ++DN+P GTNAIVAVISYTGYDMEDAMI+NKSS+ERGFAHG I+K+  ++
Sbjct: 722 LVRPYMYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVD 781

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD--YFGRDPANKA 822
           L                                       +DK + +D   FG  P +  
Sbjct: 782 L---------------------------------------ADKVRGEDAVVFGTKPGDPK 802

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
           + DKL  DGL  VG+ L   DP YSY   +  +     Y  +E   V+ +++ S  +  G
Sbjct: 803 VNDKLDADGLPRVGSVLQYGDPFYSYINLNTGQSCVHFYKSQEACVVDNIKICSNDSGSG 862

Query: 883 SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
                C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+ PDI+FNPHGF
Sbjct: 863 QFKRIC--ITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGF 920

Query: 943 PSRMTIGFL 951
           PSRMTIG L
Sbjct: 921 PSRMTIGML 929



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNYYGTE +YSGV G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 970  GYNYYGTERLYSGVSGRELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGR 1029

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C    + +MCV+   + S   E
Sbjct: 1030 NIQGGIRFGEM--ERDALLAHGSSFLLHDRLFNCSDRSEAQMCVDCGSLLSPLLE 1082


>gi|198426188|ref|XP_002131003.1| PREDICTED: similar to RNA polymerase I polypeptide B [Ciona
           intestinalis]
          Length = 1144

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/976 (39%), Positives = 558/976 (57%), Gaps = 116/976 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           ++ PSLKNLT  N+GKP + Q+  +  L  PH+ SF++ +++G+ L  + +AP+E  I  
Sbjct: 13  VTEPSLKNLTKLNYGKPEEAQHPPIQDLTRPHVDSFNWFVNDGVKLLAKGLAPLEVLINN 72

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
             L L+    ++ +PK+  G       + YP+E RQ  + Y      ++++  +G   GT
Sbjct: 73  DRLALSFTDISVEKPKIEDGFRNCRTTQVYPSECRQRGATYQAKIQASLSFEINGMKQGT 132

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
             + +G +PIM+KS RC+L  L+P +L+E+ E   E GGYF+V G+EK+VR+LI  RRN+
Sbjct: 133 IPRCLGTIPIMVKSDRCNLHGLSPKELVEKQEEEQEMGGYFVVNGNEKVVRMLIMQRRNY 192

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM 280
           P+ I R +WKNRG  +++ GV +RS+  D++    VLH+++NG+      HRK M  L +
Sbjct: 193 PVGIVRPSWKNRGQNYTEFGVSVRSMTEDQTTAPFVLHYLSNGTVTICVYHRKEMFFLPL 252

Query: 281 M-----------QSLHEEGIHTQHDSKVF---FGQIFKEKLQYD-------LRHLNE--- 316
           +           + +++E I T+ D   F      + ++   Y+       LR+L E   
Sbjct: 253 VLILKALVPFSDRDIYKELIKTKEDDTYFTCCVQNMLRQAQAYNLFEQKDFLRYLGEKFR 312

Query: 317 -----------VEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
                       +I  +ML + +L HLD   DKF  +S MT K+F +  G    D  DS+
Sbjct: 313 IKLNRASWYSDTDIAHFMLKHHVLIHLDSNEDKFRLISFMTRKVFDLALGKCMPDDADSV 372

Query: 366 MLQEIMTGGSLYLQLLKKEK-------------------------SGTSAVLKESDIYAA 400
             QE++  G L+ Q++ KEK                          G S+VL ++ + + 
Sbjct: 373 QNQEVLLPGHLF-QMVIKEKLNLWLLTLSRVVLRKATAAKAKTAIPGLSSVLIQNSMSS- 430

Query: 401 FRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYF 460
                + SAM+  LATG + +  N+ L LMQ +G  ++A+ +N MRY+SHFR +HRG++F
Sbjct: 431 --VPDVTSAMSYLLATGTLVS--NTGLGLMQFAGLTVIADKLNYMRYISHFRCIHRGAFF 486

Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVS 520
            +MR++  R+L  ++WGF+CPVHTPDG+PCGL+NH++  C+I  + PS   A +P +L  
Sbjct: 487 AQMRTTTVRKLLPESWGFLCPVHTPDGSPCGLMNHMSFLCEIVTHPPSND-AMLP-LLNR 544

Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIV 579
           LGML  T    +   +   V+LDG+++G++        V  +R  K  G+  +P +LEI 
Sbjct: 545 LGMLSPTTSEVAGFGKFYPVILDGKLIGWMPVHQGHQAVNVIRCKKARGQDNVPITLEIC 604

Query: 580 ---YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY 636
              Y  +P +    YPGLYL +   RM+RPVMNL  G +E IG+FEQV+M+ICI  +EA+
Sbjct: 605 LIEYTGKPTQ----YPGLYLMSQEARMVRPVMNLITGTVEMIGSFEQVYMNICIIPEEAH 660

Query: 637 PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
             +TTH+ELS+   LS +A+L P  D NQSPRNMYQCQMGKQTMGTPC    Y+   KLY
Sbjct: 661 K-MTTHQELSQHSILSAVASLTPYSDFNQSPRNMYQCQMGKQTMGTPCQAIAYRADNKLY 719

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
           R+QTP +   RP  YD   MDNFP G NA+VAVISYTGYDMEDAMILNK S++RGFA+G 
Sbjct: 720 RIQTPQAALVRPYMYDHYKMDNFPFGQNAVVAVISYTGYDMEDAMILNKGSFDRGFAYGT 779

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           I+K+  I+L S                                    V D+      FG 
Sbjct: 780 IYKTDLIDLSSK-----------------------------------VGDR-TVNVTFGT 803

Query: 817 DPANKALED-KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
           +P +    D  LG DGL  VG +L   D  YSY   S +     +YSG+E   V+ VR+ 
Sbjct: 804 NPKDDRFPDLNLGADGLPAVGQRLLTGDNYYSYIDHSNSEMKVVKYSGQETGYVDSVRVL 863

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
           S     G+       I  R+QRNP +GDKFASR GQKGICS KWP  +LPFT+SG+ PDI
Sbjct: 864 S--NNAGTGHFKRVSIVLRVQRNPIIGDKFASRHGQKGICSQKWPMANLPFTESGMFPDI 921

Query: 936 VFNPHGFPSRMTIGFL 951
           VFNPHGFPSRMTIG +
Sbjct: 922 VFNPHGFPSRMTIGMM 937



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 41/46 (89%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E+GYNYYGTETMYSGV G  M+AQIF G+V+YQRLRHMVSDK+Q +
Sbjct: 976  EAGYNYYGTETMYSGVSGLEMEAQIFIGIVYYQRLRHMVSDKFQVR 1021


>gi|345328017|ref|XP_001515678.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2
            [Ornithorhynchus anatinus]
          Length = 1262

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/963 (40%), Positives = 528/963 (54%), Gaps = 110/963 (11%)

Query: 48   NLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNI 107
            ++T    G P  +Q   L  L   H+ SFD  + EGL  AV+ I P EF    + + L I
Sbjct: 145  HVTRPEDGAPRARQAAALQELSRAHVRSFDHAVREGLSQAVQAILPFEFAFRDERITLAI 204

Query: 108  VKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGR 167
            V A IS P VP G +     K +P E R  RS Y G     ++W+ +G   G   + +G 
Sbjct: 205  VDAVISPPMVPKGSICKEL-KVFPAECRGRRSTYRGKLTADISWAVNGIPKGIIKQSLGY 263

Query: 168  VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
            VPIM+KSK C+L +L P  LIE  E P+E GGYFIV G EK++R+LI  RRN PIA+ R 
Sbjct: 264  VPIMVKSKLCNLYDLPPKALIEHHEEPEEMGGYFIVNGIEKIIRMLIMPRRNFPIALIRP 323

Query: 228  AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------------ 275
             WK+RG  ++  GV +  V+ + +A N  LH++ NG+    F ++K +            
Sbjct: 324  KWKSRGPGYTHFGVSMHCVRDEHTAINMNLHYLENGTVMVNFIYQKELFFLPLGFALKAL 383

Query: 276  ------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL 311
                                    C+  M++ + EEG  TQ     + G+ F+ KL    
Sbjct: 384  VGFSDHQIFQELIKGREDNSFYKNCVSQMLRMVMEEGCTTQKQVLNYLGERFRIKLNLPE 443

Query: 312  RHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
             + NE +  +++L  CI  HL    +KF  L  MT KLF   +G    +S DS+M QE++
Sbjct: 444  WYRNE-QAAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFAFAKGECMEESSDSLMNQEVL 502

Query: 372  TGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-SIESAMTNFLA 415
            T G L+L  LK               K    T+  L   ++   F     +       LA
Sbjct: 503  TPGQLFLMFLKEKLEAWLVSVKIAFDKRAQKTNISLNSENLMKVFSMGLDLTRPFEYLLA 562

Query: 416  TGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDA 475
            TG++ +   + L ++Q  G  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++
Sbjct: 563  TGSLRS--KTGLGMLQDVGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPES 620

Query: 476  WGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQS 532
            WGF+CPVHTPDG PCGL+NH+T  C+I     Y P+     +P++L SLG+ P+      
Sbjct: 621  WGFLCPVHTPDGEPCGLMNHMTAVCEIVTQVAYTPT-----LPALLCSLGITPVDGAPSQ 675

Query: 533  IPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLY 591
                   V+LDG ++G++   +A  +   LR  K++GEK IP  +E+V +    K   LY
Sbjct: 676  PYRDCYPVVLDGVVMGWVEKDLAPGIADSLRNFKVLGEKKIPPWMEVVLIPMTGKP-SLY 734

Query: 592  PGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
            PGL+LFT P RM+RPV NL  G  E+IGT EQ FM+I I   E  PGITTH+EL     L
Sbjct: 735  PGLFLFTTPCRMIRPVRNLDLGKEEFIGTLEQTFMNIAIFEDEIVPGITTHQELFPHSML 794

Query: 652  SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
            S +AN IP  D NQSPRNMYQCQMGKQTMG P   +R +   KLYRL +P SP  RP  Y
Sbjct: 795  SVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLNTYRERSDNKLYRLHSPQSPLVRPYMY 854

Query: 712  DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
            D  +MDN+P+GTNA+VAVISYTGYDMEDAMI+NKSS+ERGFAHG ++K+  ++L      
Sbjct: 855  DYYEMDNYPIGTNAVVAVISYTGYDMEDAMIVNKSSWERGFAHGTVYKTERVDL------ 908

Query: 772  YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD---YFGRDPANKALEDKLG 828
                                             SDK +  D    FG  P +  +  KL 
Sbjct: 909  ---------------------------------SDKIKQGDDCLVFGVKPGDSRVAHKLD 935

Query: 829  PDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
             DGL Y+GA L   DP YSY   +        Y  KE+  V+ +++    T  G     C
Sbjct: 936  DDGLPYIGAVLQYGDPFYSYVNLNTGESFVTYYKSKEDCVVDNIKVCGNDTGNGKF--KC 993

Query: 889  AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
              I  RI RNPT+GDKFASR GQKGI S  WPAED+PFT+SG++PDI+FNPHGFPSRMTI
Sbjct: 994  ICITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTI 1053

Query: 949  GFL 951
            G L
Sbjct: 1054 GML 1056



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 1096 AGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGG 1155

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1156 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1209


>gi|348507167|ref|XP_003441128.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
           [Oreochromis niloticus]
          Length = 1134

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/962 (40%), Positives = 537/962 (55%), Gaps = 99/962 (10%)

Query: 43  APSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT 102
            PSLKNLTD +FG   D Q+  +  L   HI SFD  + +GL+  V+ I P+EF    + 
Sbjct: 13  GPSLKNLTDGSFGHMKDTQHAAIQDLTKAHIESFDQAVIDGLNRVVQAIPPLEFMFKNER 72

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + L  V+AAI  P V  G +     K +P E R  R  Y G     V+WS +G   G   
Sbjct: 73  ISLGFVEAAIQNPVVAKGNICKEM-KVFPAECRGRRCSYKGKIVADVSWSINGVPKGIIK 131

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           + +G VPIM+KSK C+L  ++P +L+E  E  +E GGYFIV G EK++R+LI  RRN+PI
Sbjct: 132 QSLGHVPIMVKSKLCNLHGMSPKELVEHHEEAEEMGGYFIVNGIEKVIRMLIMPRRNYPI 191

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
           A+ R  WKNRG  ++  G+ +R V+ + +A N  LH++ NG+    F ++K +       
Sbjct: 192 AMSRPKWKNRGQGYTQYGISMRCVREEHTAINMNLHYLENGTVMLNFIYQKELFFLPLGF 251

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ + EE   T+     + G+ F+ K
Sbjct: 252 ALKALVDFTDFQIYQELIKGREDNSFYKTCVSEMLRIVTEENCTTRSKVLNYLGERFRVK 311

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
           +     + NE +  +++L  CI  HL    +KF  L  MT KLF   +     ++ DSI+
Sbjct: 312 MNLPEWYTNE-QCANFLLNECICIHLKSDVEKFYLLCLMTRKLFTFAKQECMEENPDSIV 370

Query: 367 LQEIMTGGSLYLQLLKK-------------EKSG---TSAVLKESDIYAAFRASSIESAM 410
            QE++T G LYL  LK+             +K G   T     E  I      + +  + 
Sbjct: 371 CQEVLTPGQLYLMFLKERLTAWLVSVKLSFDKRGSKVTGGWSSEMMIKMLNMGTDLTRSF 430

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
              LATGN+ +   + L ++Q +G  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+
Sbjct: 431 EYLLATGNLQS--KTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRK 488

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L  ++WGF+CPVHTPDG PCGL+NH+T +C+I     S     +P +L SLG+ P+    
Sbjct: 489 LLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVALTLST--TSLPGLLCSLGVTPVDGTP 546

Query: 531 QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMG 589
                    V+LDG +VG++   +A  +V  LR  K++ EK IP   EIV + +  K   
Sbjct: 547 GRAFADCYPVVLDGAVVGWVEADLAPVVVESLRRFKVLREKKIPPWTEIVLVPKTGKA-S 605

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
           LYPGL+LFT P RM+RPV NLA G  E IGTFEQ+++++ I   E  P +TTH+EL    
Sbjct: 606 LYPGLFLFTTPCRMVRPVQNLAFGKQELIGTFEQLYINVGILENEIEPRVTTHQELFPHS 665

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            LS +AN IP  D NQSPRNMYQCQMGKQTMG P  ++  +   KLYRLQTP SP  RP 
Sbjct: 666 MLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSPLVRPY 725

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
            YD   +DN+P GTNAIVAVISYTGYDMEDAMI+NKSS+ERGFAHG I+K+  ++L    
Sbjct: 726 MYDHYGLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVDLAEKV 785

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
                     G DG +                            FG  P +  +++KL  
Sbjct: 786 K---------GEDGVV----------------------------FGTKPGDPKVKEKLDA 808

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
           DGL ++G+ L   DP YSY   +  +     Y  +E   V+ +++ S   +GGS      
Sbjct: 809 DGLPFIGSVLQYGDPFYSYINLNTGQTFISYYKSQEACIVDNIKVCS--NDGGSGRFKRV 866

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+ PDI+FNPHGFPSRMTIG
Sbjct: 867 CITVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIG 926

Query: 950 FL 951
            L
Sbjct: 927 ML 928



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 969  GYNYYGTERLYSGLSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGR 1028

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C      ++CV+   + S   E
Sbjct: 1029 NVQGGIRFGEM--ERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLLE 1081


>gi|147899772|ref|NP_001080005.1| polymerase (RNA) I polypeptide B, 128kDa [Xenopus laevis]
 gi|37589362|gb|AAH59304.1| MGC68946 protein [Xenopus laevis]
          Length = 1134

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/966 (40%), Positives = 540/966 (55%), Gaps = 97/966 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           Q  L  PSL  LT  ++G P + Q+  L  +   HI SF+  + EGL LAV+ + P+EF 
Sbjct: 8   QALLREPSLAKLTSPDYGIPGESQHPPLQEITRAHIDSFNQAMTEGLSLAVQAMKPLEFT 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
                + L IV A +S P VP G +     K YP E R  RS Y G     V+WS +G  
Sbjct: 68  YRNDKVALQIVDAVLSHPLVPKGSI-CKEQKIYPAECRGRRSTYRGKLTADVSWSLNGMQ 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G+ PIM+KSK C+L +L P QL+E  E   E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQTLGQFPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM-- 275
           RN PIA+ R  WKNRG  ++  G+ IR V+ + +A N  LH++ NGS    F ++K +  
Sbjct: 187 RNFPIAMIRPKWKNRGPGYTQYGISIRCVQDEHTAVNMNLHYLENGSVMVNFIYQKELFF 246

Query: 276 ----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQ 301
                                             C+  M++ + EEG H Q +   + G+
Sbjct: 247 IPLGFALKALVEFSDYQIFTELIKGKEDNSFYRDCMTQMLRVVVEEGCHNQKNVLKYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ K      + +E +  ++++++CI  HL    +KF  L  MT KLF   +     ++
Sbjct: 307 RFRVKFYLPEWYTDE-QAAEFLISHCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVLKESDIYAAFRASS--I 406
            DS+M QE++T G L L  LK+             +K     V   ++       S+  +
Sbjct: 366 PDSLMYQEVLTPGQLLLMFLKEKMESWLLGVKLNLDKRAHKLVDLTTETMGKILTSTSDL 425

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
                  LATGN+ +   + L ++Q+SG V++A+ +N +RY+SHFR VHRG+ F +MR++
Sbjct: 426 TKLCEYLLATGNLRS--KTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTT 483

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
             R+L  ++WGF+CPVHTPDG PCGL+NH+T  C+I     +     +P +L SLGM P+
Sbjct: 484 SVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEI--VTQTSYNTSLPLLLCSLGMTPV 541

Query: 527 TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPE 585
                        VMLDG +VG++ + +A  LV  LR+ K+  +K +P   EIV +    
Sbjct: 542 DGAAGKSFADCYPVMLDGAMVGWVENNVAPGLVNALRIYKVKHDKNVPPWTEIVLIPMTG 601

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHREL 645
           K   LYPGL++FT P R++RP+ NLA G  E +GT EQVF+++ I   E  PG TTH+EL
Sbjct: 602 KA-SLYPGLFVFTTPCRLVRPIRNLALGKEELLGTLEQVFLNVAIYEGEIVPGETTHQEL 660

Query: 646 SKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPF 705
                LS +AN IP  D NQSPRNMYQCQMGKQTMG P + ++ +   KLYRLQTP SP 
Sbjct: 661 FPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSPL 720

Query: 706 FRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIEL 765
            RP  YD  +MDN+P+GTNAIVAVISYTGYDMEDAM+LNKSS+ERGFAHG ++K+  ++L
Sbjct: 721 VRPSMYDYYEMDNYPVGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVDL 780

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
                   ++ +  G D       I FG+                       P ++ ++ 
Sbjct: 781 --------SKKLKDGED------NIVFGI----------------------KPDDERVKG 804

Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
           +L  DGL  VGA L   DP Y Y   +        Y  KE   V+ +++ S     G   
Sbjct: 805 RLDNDGLPPVGAVLQFGDPYYGYLNFNTGESFVAYYKSKENCVVDNIKICSNDIGFGKFK 864

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
             C  I  RI RNPT+GDKFASR GQKGI S  WP+ED+PFT+SG+VPDI+FNPHGFPSR
Sbjct: 865 SVC--ITMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSR 922

Query: 946 MTIGFL 951
           MTIG L
Sbjct: 923 MTIGML 928



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 969  GYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGR 1028

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       MCVE   + + F E
Sbjct: 1029 NIQGGIRFGEM--ERDALLAHGTSFLLHDRLFHCSDRSTAHMCVECGSLIAPFLE 1081


>gi|351699694|gb|EHB02613.1| DNA-directed RNA polymerase I subunit RPA2 [Heterocephalus glaber]
          Length = 1129

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/967 (40%), Positives = 528/967 (54%), Gaps = 104/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N    PSLK+LT+ ++  P ++Q   L  L   H+ SF++ + EGL  AV+ I   EF 
Sbjct: 8   RNLPGGPSLKHLTNPSYRIPREQQKAALQELTRAHVDSFNYAVCEGLSQAVQAIPSFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   IV A IS P VP G +    +  YP E      V S      ++WS +G +
Sbjct: 68  FKDERISFTIVDAVISPPTVPKGTICKELS-VYPAE----EGVLSA--GADISWSVNGIS 120

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 121 RGVIKQFLGHVPIMVKSKLCNLHNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 180

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  GV +  V+ D SA N  LH++ NG+    F +RK +  
Sbjct: 181 RNFPIALIRPKWKSRGPGYTQFGVSMHCVRGDHSAVNMNLHYLENGTVMLNFIYRKELFF 240

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 241 LPLGFALKALVSFSDYQIFQELVKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 300

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +K   L  MT KLF + +G    ++
Sbjct: 301 CFRVKLNLPDWYSNE-QATEFLFDQCICIHLKSNIEKLHLLCFMTRKLFALAKGECMEEN 359

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QEI+T G L+L  LK               K    T+  +   ++   F     
Sbjct: 360 PDSLVNQEILTPGQLFLMFLKEKMEAWLMSIKIALDKRAQKTNVSINTENLMKIFSMGGD 419

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  MQ SG  ++A+ +N +RY+SHFR VHRG  F +MR+
Sbjct: 420 LTRPFEYLLATGNLRS--KTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGGDFAKMRT 477

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPV+TPDG PCGL+NHLT  C++           IP++L +LG++P
Sbjct: 478 TTVRRLLPESWGFLCPVNTPDGAPCGLMNHLTAICEVVTQF--AYTTSIPALLCTLGVMP 535

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+  +   
Sbjct: 536 VDGTPHCPYSECYPVLLDGVMVGWVDKELAPGIADSLRRFKVLREKRIPPWMEVALVPIT 595

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+ TH+E
Sbjct: 596 GKS-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQLFMNIAIFEDEVCAGVNTHQE 654

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQM KQTMG P L ++ +   KLYRLQTP SP
Sbjct: 655 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMSKQTMGFPLLTYQDRSDNKLYRLQTPQSP 714

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NKSS+ERGFAHG ++K+ FI 
Sbjct: 715 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEFIN 774

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E    G D  +                            FG  P +  + 
Sbjct: 775 L--------SEKFKQGADSLV----------------------------FGVKPGDPRIM 798

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GAKL   DP Y Y   S        Y  KE   V+ +++ S   + GS 
Sbjct: 799 QKLDDDGLPFIGAKLQYGDPHYGYLNLSTGESYVVYYKSKENCIVDNIKVCS--NDSGSG 856

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 857 KFKCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 916

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 917 RMTIGML 923



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 963  AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1022

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1023 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1076


>gi|301622234|ref|XP_002940442.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           1 [Xenopus (Silurana) tropicalis]
          Length = 1135

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/967 (40%), Positives = 535/967 (55%), Gaps = 98/967 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           Q  L  PSL  LT  ++G P + Q+  L  +   HI SF+  + EGL LAV+ + P+EF 
Sbjct: 8   QALLREPSLGKLTSPDYGIPGESQHPPLQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFT 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
                + L IV A I+ P VP G +     K YP E R  RS Y G     V+WS +G  
Sbjct: 68  YKNDKVALQIVDAVITPPLVPKGSI-CKEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQ 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G +PIM+KSK C+L +L P QL+E  E   E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM-- 275
           RN PIA+ R  WKNRG  ++  G+ +R V+ + +A N  LH++ NGS    F ++K +  
Sbjct: 187 RNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFF 246

Query: 276 ----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQ 301
                                             C+  M++++ EEG H+Q +   + G+
Sbjct: 247 IPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQKNVLKYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ K  Y      + +  +++++ CI  HL    +KF  L  MT KLF   +     ++
Sbjct: 307 RFRVKF-YLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG----------------TSAVLKESDIYAAFRASS 405
            DS+M QE+MT G L L  LK++                   T  +  E+ +      S 
Sbjct: 366 PDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETMMKVFTSTSD 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L ++Q+SG V++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKTCEYLLATGNLRS--KTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NH+T  C+I        L     +L SLGM P
Sbjct: 484 TSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLP--LLLCSLGMTP 541

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +      +      VMLDG +VG++   IA  LV  LR  K+  EK +P   EIV +   
Sbjct: 542 VDGTAGKLFADCYPVMLDGAMVGWVEKTIAPGLVSALRNYKVKHEKNVPPWTEIVLIPMT 601

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P RM+RPV NLA G  E +GT EQVF+++ +   +  PG TTH+E
Sbjct: 602 GKA-SLYPGLFLFTTPCRMVRPVRNLALGKEELLGTLEQVFLNVAVYEGDIVPGETTHQE 660

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
                 LS +AN IP  D NQSPRNMYQCQMGKQTMG P + ++ +   KLYRLQTP SP
Sbjct: 661 FFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRLQTPQSP 720

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  +MDN+P+GTNAIVAVISYTGYDMEDAM+LNKSS+ERGFAHG ++K+  ++
Sbjct: 721 LVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVYKTDHVD 780

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        ++ +  G D  +                            FG  P ++ ++
Sbjct: 781 L--------SKKLKDGEDNLV----------------------------FGIKPDDERVK 804

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +L  DGL  VGA L   DP Y Y   +        Y  KE   ++ +++ S     G  
Sbjct: 805 GRLDSDGLPAVGAVLQFGDPYYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKF 864

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  +  RI RNPT+GDKFASR GQKGI S  WP+ED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 865 KSVC--VTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPS 922

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 923 RMTIGML 929



 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 970  GYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGR 1029

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +C+E   + S F E
Sbjct: 1030 NVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSTAHVCIECGSLLSPFLE 1082


>gi|156361325|ref|XP_001625468.1| predicted protein [Nematostella vectensis]
 gi|156212303|gb|EDO33368.1| predicted protein [Nematostella vectensis]
          Length = 913

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/945 (39%), Positives = 513/945 (54%), Gaps = 173/945 (18%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTL 103
           PSLKNLT KN+G+  D Q + +  L  PHI SF+FML+EGL LA                
Sbjct: 13  PSLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLA---------------- 56

Query: 104 KLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK 163
                                        + R+  S Y     VT+ W  D    G+ TK
Sbjct: 57  ----------------------------AQCREKGSTYCSKLQVTLQWKIDNVPQGSVTK 88

Query: 164 EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
            +  +P+M+KS  C L NL+P +L+ + E   E GGYFIV G EK++R+LI  RRN+P+A
Sbjct: 89  VIAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLA 148

Query: 224 IKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM-------- 275
           I R +WK RG  +++ GV +RSVK D+SA N  LH++ +G+     ++RK +        
Sbjct: 149 IIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFI 208

Query: 276 ----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKL 307
                                       C+  M+++  EEG   Q     + G  F+ K+
Sbjct: 209 LKALMNVTDQHIYRELIKAEENNTFWKDCVAMMLRTAQEEGAVNQKSVLEYIGLRFRVKM 268

Query: 308 QYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIML 367
           +      +E  +  Y++  CI  HLD   DKF  L  MT KL+ +       +S DS M 
Sbjct: 269 RLPDWFSDEA-VAQYLIQQCICIHLDTNADKFNLLILMTRKLYALALEKCCAESADSPMN 327

Query: 368 QEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
           QE++ GG LYL +LK                           M  FLATGN+ +   S L
Sbjct: 328 QEVLLGGHLYLMVLK---------------------------MEYFLATGNLIS--KSGL 358

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
            L Q SGF ++A+ +N  R++SHFR +HRG++F +MR++  R+L  +AWGF+CPVHTPDG
Sbjct: 359 ALQQISGFTVVADRLNYFRFLSHFRCIHRGAFFSQMRTTSVRKLLPEAWGFLCPVHTPDG 418

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
            PCGLLNHL   CQ+   +P  ++A +  +L ++GM+P+   +    +    V++DGR++
Sbjct: 419 APCGLLNHLAAGCQVVNVVP--LVAHMLRLLCTMGMIPVDAPVPGDYKNYYPVVMDGRVL 476

Query: 548 GYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           G +   +A +L  +LR++K++GE ++P+ LEI  L    K    YPGL++F+ P RM+RP
Sbjct: 477 GSVDRDLAPTLANRLRIMKVLGEERVPQFLEIC-LVPITKVASQYPGLFIFSSPARMMRP 535

Query: 607 VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           V+NLA   IE IG+FEQV+MDI I  +E + G+TTH EL  T  LS +A++ P  D NQS
Sbjct: 536 VLNLAVNKIEMIGSFEQVYMDIAIVQEELHEGVTTHMELKPTAMLSAIASMTPYSDFNQS 595

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRNMYQCQMGKQTMGTP   ++++   KLYR+QTP SP  RP  +D   MD +P+GTNAI
Sbjct: 596 PRNMYQCQMGKQTMGTPVHAFQHRTDNKLYRIQTPQSPLVRPASHDFYIMDEYPLGTNAI 655

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAVISYTGYDMEDAM+LNK+SYERGFAHG I+K+ F+ LE                 S +
Sbjct: 656 VAVISYTGYDMEDAMVLNKASYERGFAHGSIYKAQFVNLEPKSQ--------DRTSSSNL 707

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY 846
           Q                          FG  P +  ++ +L  DG   +GA L+  DP Y
Sbjct: 708 Q--------------------------FGTLPDDPRIDGRLDADGFPPLGAHLSTGDPYY 741

Query: 847 SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFA 906
           SY   +    V  +YS  E   ++                          RNP +GDKF+
Sbjct: 742 SYIDTNTGEAVVKKYSNLEAGIID-------------------------DRNPIIGDKFS 776

Query: 907 SRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           SR GQKGICS KWP E++PF++SG+ PDI+FNPHGFPSRMTIG +
Sbjct: 777 SRHGQKGICSQKWPVENMPFSESGMTPDIIFNPHGFPSRMTIGMM 821


>gi|332257260|ref|XP_003277727.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
           [Nomascus leucogenys]
          Length = 1070

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/904 (41%), Positives = 510/904 (56%), Gaps = 100/904 (11%)

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
           TL   +  +  S P VP G +    N  YP E R  RS Y G     + W+ +G + G  
Sbjct: 7   TLCTRVSASRCSPPTVPKGTICKEVN-IYPAECRGRRSTYRGKLTADINWAVNGISKGII 65

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN P
Sbjct: 66  KQFLGYVPIMVKSKLCNLHNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 125

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L   
Sbjct: 126 IAMIRPKWKTRGPGYTQYGVSVHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLG 185

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++ + EEG  TQ     + G+ F+ 
Sbjct: 186 FALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRV 245

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+ DS+
Sbjct: 246 KLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSL 304

Query: 366 MLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-SIESA 409
           + QE++T G L+L  LK++  G               T+  +   ++   F     +   
Sbjct: 305 VNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTKP 364

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
                ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 365 FEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 422

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ P+  
Sbjct: 423 RLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPVDG 479

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                  +   V+LDG +VG++  +IA  +   LR  K++ EK IP  +E+V +    K 
Sbjct: 480 APHRPYSECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVLREKRIPPWMEVVLIPMTGKP 539

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL  
Sbjct: 540 -SLYPGLFLFTTPCRLVRPVQNLEMGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFP 598

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 599 HSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVR 658

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L  
Sbjct: 659 PSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-- 716

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E +  G D S++                           FG  P +  +  KL
Sbjct: 717 ------SEKIKQG-DSSLV---------------------------FGIKPGDPRVLQKL 742

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     
Sbjct: 743 DDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--K 800

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMT
Sbjct: 801 CVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMT 860

Query: 948 IGFL 951
           IG L
Sbjct: 861 IGML 864



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN++GTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 904 AGYNFHGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 954


>gi|397465560|ref|XP_003804559.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
           [Pan paniscus]
          Length = 1070

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/904 (41%), Positives = 509/904 (56%), Gaps = 100/904 (11%)

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
           TL      +  S P VP G +    N  YP E R  RS Y G     + W+ +G + G  
Sbjct: 7   TLCTRASASRCSPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGISKGII 65

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN P
Sbjct: 66  KQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 125

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L   
Sbjct: 126 IAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLG 185

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++ + EEG  TQ     + G+ F+ 
Sbjct: 186 FALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGECFRV 245

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+ DS+
Sbjct: 246 KLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSL 304

Query: 366 MLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-SIESA 409
           + QE++T G L+L  LK++  G               TS  +   ++   F     +   
Sbjct: 305 VNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTMGIDLTKP 364

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
                ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 365 FEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 422

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ P+  
Sbjct: 423 RLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPIDG 479

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                  +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +    K 
Sbjct: 480 APHRSYSECYPVLLDGVMVGWVDKDLAPGITDSLRHFKVLREKRIPPWMEVVLIPMTGKP 539

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL  
Sbjct: 540 -SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFP 598

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 599 HSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVR 658

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L  
Sbjct: 659 PSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-- 716

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E +  G D S++                           FG  P +  +  KL
Sbjct: 717 ------SEKIKQG-DSSLV---------------------------FGIKPGDPRVLQKL 742

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     
Sbjct: 743 DDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--K 800

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMT
Sbjct: 801 CVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMT 860

Query: 948 IGFL 951
           IG L
Sbjct: 861 IGML 864



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 904 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 954


>gi|114579608|ref|XP_001145162.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 6
           [Pan troglodytes]
          Length = 1070

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/904 (41%), Positives = 509/904 (56%), Gaps = 100/904 (11%)

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
           TL      +  S P VP G +    N  YP E R  RS Y G     + W+ +G + G  
Sbjct: 7   TLCTRASASRCSPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGISKGII 65

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN P
Sbjct: 66  KQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 125

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L   
Sbjct: 126 IAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLG 185

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++ + EEG  TQ     + G+ F+ 
Sbjct: 186 FALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGECFRV 245

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+ DS+
Sbjct: 246 KLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSL 304

Query: 366 MLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-SIESA 409
           + QE++T G L+L  LK++  G               TS  +   ++   F     +   
Sbjct: 305 VNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTMGIDLTKP 364

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
                ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 365 FEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 422

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ P+  
Sbjct: 423 RLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPIDG 479

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                  +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +    K 
Sbjct: 480 APHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP 539

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL  
Sbjct: 540 -SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFP 598

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 599 HSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTPQSPLVR 658

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L  
Sbjct: 659 PSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-- 716

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E +  G D S++                           FG  P +  +  KL
Sbjct: 717 ------SEKIKQG-DSSLV---------------------------FGIKPGDPRVLQKL 742

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     
Sbjct: 743 DDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--K 800

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMT
Sbjct: 801 CVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMT 860

Query: 948 IGFL 951
           IG L
Sbjct: 861 IGML 864



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 904 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 954


>gi|426336847|ref|XP_004031666.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
           [Gorilla gorilla gorilla]
          Length = 1070

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/904 (41%), Positives = 510/904 (56%), Gaps = 100/904 (11%)

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
           TL   +  +  S P VP G +    N  YP E R  RS Y G     + W+ +G + G  
Sbjct: 7   TLCTRVSASRCSPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGISKGII 65

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN P
Sbjct: 66  KQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 125

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L   
Sbjct: 126 IAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLG 185

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++ + EEG  TQ     + G+ F+ 
Sbjct: 186 FALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRV 245

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+ DS+
Sbjct: 246 KLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSL 304

Query: 366 MLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-SIESA 409
           + QE++T G L+L  LK++  G               T+  +   ++   F     +   
Sbjct: 305 VNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAMGIDLTKP 364

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
                ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 365 FEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 422

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ P+  
Sbjct: 423 RLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPIDG 479

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                  +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +    K 
Sbjct: 480 APHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP 539

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL  
Sbjct: 540 -SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFP 598

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 599 HSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVR 658

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L  
Sbjct: 659 PSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-- 716

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E +  G D S++                           FG  P +  +  KL
Sbjct: 717 ------SEKIKQG-DTSLV---------------------------FGIKPGDPRVLQKL 742

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     
Sbjct: 743 DDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--K 800

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMT
Sbjct: 801 CVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMT 860

Query: 948 IGFL 951
           IG L
Sbjct: 861 IGML 864



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 904 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 954


>gi|403303875|ref|XP_003942544.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
           [Saimiri boliviensis boliviensis]
          Length = 1070

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/903 (40%), Positives = 509/903 (56%), Gaps = 100/903 (11%)

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           L   +  +  S P VP G +    +  YP E R  RS Y G     + W+ +G + G   
Sbjct: 8   LCTKVSASRCSPPTVPKGTICKEAS-VYPAECRGRRSTYRGKLTADINWAVNGISKGIIK 66

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN PI
Sbjct: 67  QSLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPI 126

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL---- 278
           A+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L    
Sbjct: 127 AMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGF 186

Query: 279 --------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                            M++ + EEG  TQ     + G+ F+ K
Sbjct: 187 ALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVK 246

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
           L     + NE +  +++L  CI  HL    +KF  L  MT KLF + +G    D+ DS++
Sbjct: 247 LNVPDWYPNE-QAAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLV 305

Query: 367 LQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-SIESAM 410
            QE++T G L+L  LK++  G               T+  +   ++   F     +    
Sbjct: 306 NQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTMGLDLTKPF 365

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
              LATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRGS F +MR++  R+
Sbjct: 366 EYLLATGNLRS--KTGLGLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRTTTVRR 423

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPV 529
           L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +     IP++L +LG+ P+   
Sbjct: 424 LLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---TSIPALLCNLGVTPVDGA 480

Query: 530 IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGM 588
                 +   V+LDG +VG++  ++A+ +   LR  K++ EK IP  +E+V +    K  
Sbjct: 481 PHRPYSECYPVLLDGVMVGWVDKELASGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP- 539

Query: 589 GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKT 648
            LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL   
Sbjct: 540 SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIYEDEVFAGVTTHQELFPH 599

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
             LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP
Sbjct: 600 SLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRP 659

Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
             YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L   
Sbjct: 660 SMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--- 716

Query: 769 YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
                +E +  G D S++                           FG    +  +  KL 
Sbjct: 717 -----SEKIKQG-DSSLV---------------------------FGIKLGDPRVLQKLD 743

Query: 829 PDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     C
Sbjct: 744 DDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KC 801

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPSRMTI
Sbjct: 802 VCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTI 861

Query: 949 GFL 951
           G L
Sbjct: 862 GML 864



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 904 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 954


>gi|402891936|ref|XP_003909184.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
           [Papio anubis]
          Length = 1070

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/899 (40%), Positives = 508/899 (56%), Gaps = 100/899 (11%)

Query: 107 IVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVG 166
           +  +  S P VP G +    +  YP E R  RS Y G     + W+ +G + G   + +G
Sbjct: 12  VSASRCSPPTVPKGTICKEVS-VYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQCLG 70

Query: 167 RVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
            VPIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  RRN PIA+ R
Sbjct: 71  YVPIMVKSKLCNLHSLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIR 130

Query: 227 NAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL-------- 278
             WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L        
Sbjct: 131 PKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKA 190

Query: 279 ----------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYD 310
                                        M++ + EEG  TQ     + G+ F+ KL   
Sbjct: 191 LVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVP 250

Query: 311 LRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI 370
             + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+ DS++ QE+
Sbjct: 251 DWYPNE-QAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEV 309

Query: 371 MTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-SIESAMTNFL 414
           +T G L+L  LK++  G               T+  +   ++   F     +        
Sbjct: 310 LTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTKPFEYLF 369

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
           ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  +
Sbjct: 370 ATGNLRS--KTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPE 427

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI 533
           +WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ P+       
Sbjct: 428 SWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPVDGAPHRP 484

Query: 534 PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYP 592
             +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+V +    K   LYP
Sbjct: 485 YSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYP 543

Query: 593 GLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLS 652
           GL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL     LS
Sbjct: 544 GLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLS 603

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
            +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD
Sbjct: 604 VIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYD 663

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
             DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L       
Sbjct: 664 YYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL------- 716

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
            +E +  G D S++                           FG  P +  +  KL  DGL
Sbjct: 717 -SEKIKQG-DSSLV---------------------------FGIKPGDPRVLQKLDDDGL 747

Query: 833 VYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
            ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     C  I 
Sbjct: 748 PFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCIT 805

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 806 MRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 864



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 904 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 954


>gi|410955304|ref|XP_003984296.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
           [Felis catus]
          Length = 1070

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/904 (41%), Positives = 508/904 (56%), Gaps = 100/904 (11%)

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
           TL   +     S P VP G +    N  YP E R  RS Y G     ++W+ +G + G  
Sbjct: 7   TLCARVSATRCSPPMVPKGNICKELN-IYPAECRGRRSTYRGKLTADISWAVNGISKGVI 65

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN P
Sbjct: 66  KQFLGYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 125

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L   
Sbjct: 126 IAMVRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLG 185

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++ + EEG  TQ     + G+ F+ 
Sbjct: 186 FALKALVNFSDYQIFQELIKGKEEDSFFRNSISQMLRIVMEEGCSTQKQVLNYLGECFRV 245

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++ DS+
Sbjct: 246 KLSLPDWYPNE-QAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEENPDSL 304

Query: 366 MLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRAS---SIESAMTNF--------- 413
           + QE++T G L+L  LK++       +K +    A +A+   + E+ M  F         
Sbjct: 305 VNQEVLTPGQLFLMFLKEKMEAWLVSIKIALDKRAQKANVSINTENLMKIFSMGTDLTKP 364

Query: 414 ----LATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
               LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 365 FEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 422

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L SLG+ P+  
Sbjct: 423 RLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCSLGVTPVDG 479

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                  +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+  +    K 
Sbjct: 480 APHRPYSECYPVLLDGVMVGWVDKDLAPGVADSLRHFKVLREKRIPPWMEVALIPMTGKP 539

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+TTH+EL  
Sbjct: 540 -SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNIAIFEDEVLAGVTTHQELFP 598

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 599 HSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSPLVR 658

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L  
Sbjct: 659 PYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-- 716

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E +  G D  +                            FG  P +  +  KL
Sbjct: 717 ------SEKIKQGDDSLV----------------------------FGVKPGDPRVLQKL 742

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++GA+L   DP Y Y   +        Y  KE   V+ +++ S  T  G     
Sbjct: 743 DDDGLPFIGAQLKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKF--K 800

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PF++SG+VPDI+FNPHGFPSRMT
Sbjct: 801 CICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFSESGMVPDILFNPHGFPSRMT 860

Query: 948 IGFL 951
           IG L
Sbjct: 861 IGML 864



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 904  AGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 963

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 964  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLE 1017


>gi|76253769|ref|NP_956812.2| DNA-directed RNA polymerase I subunit RPA2 [Danio rerio]
 gi|66911319|gb|AAH97040.1| Zgc:66298 [Danio rerio]
 gi|182890886|gb|AAI65683.1| Zgc:66298 protein [Danio rerio]
          Length = 1132

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/971 (39%), Positives = 537/971 (55%), Gaps = 110/971 (11%)

Query: 39  NTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI 98
           N  + PSLK+LT+  FG P +KQ   +  L   HI SFD  + +GL   VE I P+EF  
Sbjct: 8   NLKTEPSLKHLTEAGFGVPKEKQRVPVQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLY 67

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            G  + L+ V+A I  P V  G +     + +P E R  R  Y       V+WS +G   
Sbjct: 68  KGDRISLSFVEAIIHTPSVSKGGISRDL-RVFPAECRGRRCTYRAKLVADVSWSVNGVPK 126

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
           G   + +G++PIM+KSK C+L  L+P +L+E  E  +E GGYFIV G EK++RLLI  RR
Sbjct: 127 GIIKQSLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRR 186

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM--- 275
           N+PIA+ R  +K+RG  ++   + +R VK + +A N  LH++ NG+    F +RK +   
Sbjct: 187 NYPIAVSRPKFKSRGQGYTQYAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFL 246

Query: 276 ---------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQI 302
                                            C+  M++ + ++G  T+     + G+ 
Sbjct: 247 PLGFALKALVDYSDYQIYQELIKGREDNSFYKSCVSEMLRIVMDQGCTTKIKVLNYLGER 306

Query: 303 FKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
           F+ KL       +E +   ++L  C+  HL    +KF  L  MT KLF   +     ++ 
Sbjct: 307 FRVKLNLPEWFTHE-QCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENP 365

Query: 363 DSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---------------ESDIYAAFRASSIE 407
           DS M  E++T G LYL  LK++  G    +K               +S        + + 
Sbjct: 366 DSPMFHEVLTPGQLYLMFLKEKMEGWLVSVKLALEKKPQRVGGLTPDSMTKLFNMGTDLT 425

Query: 408 SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSE 467
            A    LATGN+ +   + L ++Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++ 
Sbjct: 426 KAFEYLLATGNLMS--KTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT 483

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
            R+L  ++WGF+CPVHTPDG PCGL+NH+T +C+I    P    + +P +L SLG+    
Sbjct: 484 VRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEI--VAPVYPTSTLPGLLCSLGV---- 537

Query: 528 PVIQSIPEQALM----VMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLK 582
                 P QA      V+LDG ++G++  ++A S++  LR  K++GEK +P   EIV + 
Sbjct: 538 NAADGNPGQAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVP 597

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
           +  K   LYPGLYLFT P RM+R V NL+ G  E IG FEQV++++ I  KE   G+TTH
Sbjct: 598 QTGKA-SLYPGLYLFTTPCRMVRTVRNLSLGKQELIGIFEQVYLNVGIFEKEIEDGVTTH 656

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
           +EL     LS +A  IP  D NQSPRNMYQCQM KQTMG P  +++Y+   KLYRLQTP 
Sbjct: 657 QELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQ 716

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
           SP  RP  YD  D+DN+P+GTNAIVAVISYTGYDMEDAMI+NKSS+ERGFAHG ++K+  
Sbjct: 717 SPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEI 776

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD--YFGRDPAN 820
           I+L                                       S+K +  D   FG  P +
Sbjct: 777 IDL---------------------------------------SEKVKGDDSIVFGVKPGD 797

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
             +  KL  DGL ++G+ L   DP Y Y   +  +     Y  +E   V+ +++ S  T 
Sbjct: 798 PKVMGKLDADGLPFIGSVLKYGDPFYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETG 857

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
            G     C  +  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+ PDI+FNPH
Sbjct: 858 TGRFKRIC--VTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPH 915

Query: 941 GFPSRMTIGFL 951
           GFPSRMTIG L
Sbjct: 916 GFPSRMTIGML 926



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 966  AGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGG 1025

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C      ++C++   + S   E
Sbjct: 1026 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSTLLE 1079


>gi|124504400|gb|AAI28811.1| Zgc:66298 [Danio rerio]
          Length = 1132

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/971 (39%), Positives = 537/971 (55%), Gaps = 110/971 (11%)

Query: 39  NTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI 98
           N  + PSLK+LT+  FG P +KQ   +  L   HI SFD  + +GL   VE I P+EF  
Sbjct: 8   NLKTEPSLKHLTEAGFGVPKEKQRVPVQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLY 67

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            G  + L+ V+A I  P V  G +     + +P E R  R  Y       V+WS +G   
Sbjct: 68  KGDRISLSFVEAIIHTPSVSKGGISRDL-RVFPAECRGRRCTYRAKLVADVSWSVNGVPK 126

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
           G   + +G++PIM+KSK C+L  L+P +L+E  E  +E GGYFIV G EK++RLLI  RR
Sbjct: 127 GIIKQSLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRR 186

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM--- 275
           N+PIA+ R  +K+RG  ++   + +R VK + +A N  LH++ NG+    F +RK +   
Sbjct: 187 NYPIAVSRPKFKSRGQGYTQYAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFL 246

Query: 276 ---------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQI 302
                                            C+  M++ + ++G  T+     + G+ 
Sbjct: 247 PLGFALKALVDYSDYQIYQELIKGREDNSFYKSCVSEMLRIVMDQGCTTKIKVLNYLGER 306

Query: 303 FKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
           F+ KL       +E +   ++L  C+  HL    +KF  L  MT KLF   +     ++ 
Sbjct: 307 FRVKLNLPEWFTHE-QCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENP 365

Query: 363 DSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---------------ESDIYAAFRASSIE 407
           DS M  E++T G LYL  LK++  G    +K               +S        + + 
Sbjct: 366 DSPMFHEVLTPGQLYLMFLKEKMEGWLVSVKLALEKKPQRVGGLTPDSMTKLFNMGTDLT 425

Query: 408 SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSE 467
            A    LATGN+ +   + L ++Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++ 
Sbjct: 426 KAFEYLLATGNLMS--KTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT 483

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
            R+L  ++WGF+CPVHTPDG PCGL+NH+T +C+I    P    + +P +L SLG+    
Sbjct: 484 VRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEI--VAPVYPTSTLPGLLCSLGV---- 537

Query: 528 PVIQSIPEQALM----VMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLK 582
                 P QA      V+LDG ++G++  ++A S++  LR  K++GEK +P   EIV + 
Sbjct: 538 NAADGNPGQAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVP 597

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
           +  K   LYPGLYLFT P RM+R V NL+ G  E IG FEQV++++ I  KE   G+TTH
Sbjct: 598 QTGKA-SLYPGLYLFTTPCRMVRTVRNLSLGKQELIGIFEQVYLNVGIFEKEIEDGVTTH 656

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
           +EL     LS +A  IP  D NQSPRNMYQCQM KQTMG P  +++Y+   KLYRLQTP 
Sbjct: 657 QELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQYRSDNKLYRLQTPQ 716

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
           SP  RP  YD  D+DN+P+GTNAIVAVISYTGYDMEDAMI+NKSS+ERGFAHG ++K+  
Sbjct: 717 SPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEI 776

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD--YFGRDPAN 820
           I+L                                       S+K +  D   FG  P +
Sbjct: 777 IDL---------------------------------------SEKVKGDDSIVFGVKPGD 797

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
             +  KL  DGL ++G+ L   DP Y Y   +  +     Y  +E   V+ +++ S  T 
Sbjct: 798 PKVMGKLDADGLPFIGSVLKYGDPFYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETG 857

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
            G     C  +  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+ PDI+FNPH
Sbjct: 858 TGRFKRIC--VTSRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPH 915

Query: 941 GFPSRMTIGFL 951
           GFPSRMTIG L
Sbjct: 916 GFPSRMTIGML 926



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 966  AGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGG 1025

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C      ++C++   + S   E
Sbjct: 1026 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSPLLE 1079


>gi|212286172|ref|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Homo sapiens]
 gi|119593996|gb|EAW73590.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_a [Homo
           sapiens]
          Length = 1079

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/968 (39%), Positives = 526/968 (54%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+  A I + 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQ--ADINWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +           F  Y P                          
Sbjct: 66  VNG------ISKGIIKQ-----------FLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A IP++L +LG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 485 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 724 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|397465558|ref|XP_003804558.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Pan paniscus]
          Length = 1079

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/968 (39%), Positives = 525/968 (54%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+  A I + 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQ--ADINWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +           F  Y P                          
Sbjct: 66  VNG------ISKGIIKQ-----------FLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTMGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A IP++L +LG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 485 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGITDSLRHFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 724 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|332814147|ref|XP_001144997.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
           [Pan troglodytes]
          Length = 1079

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/968 (39%), Positives = 525/968 (54%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+  A I + 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQ--ADINWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +           F  Y P                          
Sbjct: 66  VNG------ISKGIIKQ-----------FLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTMGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A IP++L +LG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 485 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 724 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|332257258|ref|XP_003277726.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Nomascus leucogenys]
          Length = 1079

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/968 (39%), Positives = 525/968 (54%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+  A I + 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKTALQELTRAHVESFNYAVHEGLGLAVQ--ADINWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +           F  Y P                          
Sbjct: 66  VNG------ISKGIIKQ-----------FLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLHNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSVHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A IP++L +LG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  +IA  +   LR  K++ EK IP  +E+V +  
Sbjct: 485 PVDGAPHRPYSECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLEMGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 724 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN++GTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFHGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|10433976|dbj|BAB14082.1| unnamed protein product [Homo sapiens]
          Length = 1079

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/968 (39%), Positives = 527/968 (54%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+  A I + 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQ--ADINWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +           F  Y P                          
Sbjct: 66  VNG------ISKGIIKQ-----------FLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 --LG----------------------------------MMQSLHEEGIHTQHDSKVFFGQ 301
             LG                                  M++ + EEG  TQ     + G+
Sbjct: 191 RPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A IP++L +LG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 485 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 724 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR G+KGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVRITMRVPRNPTIGDKFASRHGRKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|426336845|ref|XP_004031665.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Gorilla gorilla gorilla]
          Length = 1079

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/968 (39%), Positives = 525/968 (54%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+  A I + 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQ--ADINWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +           F  Y P                          
Sbjct: 66  VNG------ISKGIIKQ-----------FLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAMGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A IP++L +LG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 485 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 724 DL--------SEKIKQG-DTSLV---------------------------FGIKPGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|324502024|gb|ADY40894.1| DNA-directed RNA polymerase I subunit RPA2 [Ascaris suum]
          Length = 1163

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/962 (37%), Positives = 514/962 (53%), Gaps = 114/962 (11%)

Query: 57  PPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEP 115
           P D   +    + + H+ SFD++ DEG+ LA  D+   +F +  G+ +++    A +  P
Sbjct: 29  PVDITQQMDCEIASYHVGSFDYLADEGVHLAAVDVPTEKFRLPNGEAVEMKYTGAQLGYP 88

Query: 116 KVPAGP---VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIML 172
            +         I   K YP+E RQ    Y  P   ++    +G         +G VP+ML
Sbjct: 89  ALETSSGLTSSIDAMKIYPSECRQRGMTYRAPLKASIEIRINGVRAECCEAILGEVPVML 148

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
            S RCHL+ L+ +QL+ RGE   E GGYFIV G EK++RLL+ NRRN PIA+ R +++++
Sbjct: 149 MSSRCHLKGLSRSQLVARGEEATEKGGYFIVKGSEKVIRLLVANRRNFPIALVRRSFRDK 208

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM----------------- 275
           G LF+  GV +R +K + SA    +H++  G+      +R+ +                 
Sbjct: 209 GKLFTQYGVMMRCIKENHSAAMITMHYLETGAITVAVQYRRELFYIPLMYILKALVPMND 268

Query: 276 -------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-N 315
                              C+  M+    E+GI  Q  +    G  F+  L+  +    +
Sbjct: 269 ACIRDHLVRARPNDHFWANCVTSMLALCQEDGITNQEAALTVLGSRFRVALEDRVGPWES 328

Query: 316 EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
             ++  ++L  C+  HL D  +KF  L +M  KL  +V+G    ++ D+   QE    G 
Sbjct: 329 SSDVGRFLLRACVAIHLSDNEEKFFILVYMAQKLIALVKGECAPETPDNPQFQETALSGH 388

Query: 376 LYLQLLKKEKSGTSAVLKES-----------------DIYAAF---RASSIESAMTNFLA 415
           + L ++++       V++                   ++  AF   R+  I   +  FLA
Sbjct: 389 ILLLIIRERMENILGVVRRKIEFEAKRKADTFNLTSREVLRAFGSHRSGEISRGLEYFLA 448

Query: 416 TGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDA 475
           TGN+     + L L Q +GF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +A
Sbjct: 449 TGNLLT--RTGLALQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEA 506

Query: 476 WGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE 535
           WGFICPVHTPDG PCGLLNH+T + +I  +  S  L Q+P++L  LG+L  + V     +
Sbjct: 507 WGFICPVHTPDGAPCGLLNHVTASVRIVTHYSS--LKQMPALLAELGVLSHSAVALMPTD 564

Query: 536 QALMVMLDGRIVGYILDQIATSLVPKLRMLKI--VGEKIPKSLEIVYLKRPEKGMGL--- 590
           +   V+LDGR VGY+    A  +  +LR +K+     ++P   EI  ++     + +   
Sbjct: 565 EMYPVLLDGRFVGYVPRSKAAYVEKQLRAVKVDRNDRRVPYVSEIALVRHSSDPVNIQTQ 624

Query: 591 YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
           YPGL + T P RM+RPV NLAA   E+IGTFEQV++ ICI   EA PG+T H+EL  +  
Sbjct: 625 YPGLCIMTDPARMIRPVKNLAANATEFIGTFEQVYLSICIEPDEAEPGVTMHQELHPSCL 684

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            S   NLIP PD NQSPRN+YQCQMGKQTMGTP   W ++   K+YRLQ P SP  +P  
Sbjct: 685 FSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTPVHAWSHRADNKMYRLQFPQSPLLKPEA 744

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
           YD  +MD +P+GTNA VAVISYTGYDMEDAM++NKSS++RGFAHG + K   + L+ G +
Sbjct: 745 YDKYEMDEYPLGTNACVAVISYTGYDMEDAMVINKSSFQRGFAHGTVIKVERVNLQEGRS 804

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                                                    D F  DP  K     +G D
Sbjct: 805 I--------------------------------------NSDVFMNDPTKKT--PSIGED 824

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC-A 889
           GL   G    E DP Y+        Y T  +   E     +VR+     EGG     C A
Sbjct: 825 GLPIPGRLYMEGDPYYTVLSLDTGVYKTHHFKYAEPAYCGIVRI---VEEGGMTRGKCHA 881

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            I +RIQRNP +GDKFASR GQKGI S  WPAE +PF++SG++PDI+FNPHGFPSRMTIG
Sbjct: 882 LIQWRIQRNPIIGDKFASRHGQKGINSFLWPAESMPFSESGMMPDIIFNPHGFPSRMTIG 941

Query: 950 FL 951
            +
Sbjct: 942 MM 943



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYG ETMYSGVDG  M+ QIFFG+V+YQRLRHM++DK+Q +     DP        
Sbjct: 983  AGYNYYGNETMYSGVDGREMEVQIFFGIVYYQRLRHMIADKFQVRSTGPIDPVTHQPVKG 1042

Query: 827  LGPDGLVYVGAKLNERDPMYSY 848
                G +  G    ERD M ++
Sbjct: 1043 RKKGGGIRFGEM--ERDAMIAH 1062


>gi|403303873|ref|XP_003942543.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Saimiri boliviensis boliviensis]
          Length = 1079

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/968 (39%), Positives = 526/968 (54%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  + PSLK+LT+ ++G P ++Q   L  L   H+ SF++ + EGL LAV+  A I + 
Sbjct: 8   RNLPNGPSLKHLTEPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQ--ADINWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +                                           
Sbjct: 66  VNG------ISKGIIKQ------------------------------------------- 76

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                  +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 77  ------SLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++L  CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNVPDWYPNE-QAAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTMGLD 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRGS F +MR+
Sbjct: 370 LTKPFEYLLATGNLRS--KTGLGLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +     IP++L +LG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---TSIPALLCNLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A+ +   LR  K++ EK IP  +E+V +  
Sbjct: 485 PVDGAPHRPYSECYPVLLDGVMVGWVDKELASGIADSLRHFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIYEDEVFAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG    +  +
Sbjct: 724 DL--------SEKIKQG-DSSLV---------------------------FGIKLGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 913 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 963


>gi|354471218|ref|XP_003497840.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Cricetulus griseus]
          Length = 1079

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 380/964 (39%), Positives = 518/964 (53%), Gaps = 156/964 (16%)

Query: 42  SAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
           S PSLK+LTD ++  PP++Q   L  L   H+ SF++ + EGL  AV+  A I + + G 
Sbjct: 12  SGPSLKHLTDPSYAIPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQ--ADISWAVNG- 68

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
                          VP G +                                       
Sbjct: 69  ---------------VPKGVI--------------------------------------- 74

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN P
Sbjct: 75  KQFLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFP 134

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL--- 278
           IA+ R  WK+RGL ++  GV +  V+ + SA N  LH+V NG+    F +RK +  L   
Sbjct: 135 IAMIRPKWKSRGLGYTHFGVSMHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLG 194

Query: 279 ---------------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             M++++ EEG  TQ     + G+ F+ 
Sbjct: 195 FVLKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYLGERFRV 254

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           KL     + NE E   ++   CI  HL    +KF  L  MT KLF + +G    D+ DS+
Sbjct: 255 KLSLPEWYPNE-EAAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMEDNPDSL 313

Query: 366 MLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASSIESA 409
           + QE++T G L+L  LK               K    T+  +   ++   F   + +   
Sbjct: 314 VNQEVLTPGQLFLMFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSMGTELTRP 373

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
               LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R
Sbjct: 374 FEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 431

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGMLPLTP 528
           +L  ++WGF+CPVHTPDG PCGLLNHLT  C+ +++++ +   A +P++L  LG+ P+  
Sbjct: 432 RLLPESWGFLCPVHTPDGAPCGLLNHLTAICEVVTKFVYT---ASVPALLCGLGVTPVDA 488

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKG 587
                      V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+  +    K 
Sbjct: 489 TPCRPYSDCYPVLLDGVMVGWVDKELAPDVADTLRRFKVLREKRIPPWMEVALVPMTGKP 548

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
             LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + GI+TH+EL  
Sbjct: 549 -SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQLFMNVAIFEDEVFSGISTHQELFP 607

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  R
Sbjct: 608 HSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVR 667

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
           P  YD   MDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L  
Sbjct: 668 PCMYDYYSMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-- 725

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 +E    G D  +                            FG  P +  +  KL
Sbjct: 726 ------SEKFKQGNDNLV----------------------------FGIKPGDPRVMQKL 751

Query: 828 GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
             DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     
Sbjct: 752 DDDGLPFIGAKLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKF--K 809

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMT
Sbjct: 810 CICITIRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMT 869

Query: 948 IGFL 951
           IG L
Sbjct: 870 IGML 873



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|338713979|ref|XP_003362991.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
           caballus]
          Length = 1079

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 376/967 (38%), Positives = 516/967 (53%), Gaps = 154/967 (15%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S P+LK+LTD  +G P ++Q   L  L   H+ SF++ + EGL  AV+  A I + 
Sbjct: 8   RNLPSGPTLKHLTDPLYGIPQEQQKPALQELTRAHVESFNYAVREGLSHAVQ--ADISWS 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G                +P G +                                   
Sbjct: 66  VNG----------------IPKGII----------------------------------- 74

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 75  ----KQFLGYVPIMVKSKLCNLYNLPPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIALTRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFVYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVTEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     +  + +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 251 RFRVKLNLPDWY-PDAQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEEN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K+   T   +   ++   F   + 
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKIALDKKAQKTDVSINTDNLMKIFNLGTD 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++         A +P++L SLG+ P
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQF--AYTASVPALLCSLGVTP 485

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG +VG++  ++A S+   LR  K++ EK IP  +E+  +   
Sbjct: 486 VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPMT 545

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E + G+TTH+E
Sbjct: 546 GKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQIFMNIAIFEDEVFAGVTTHQE 604

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L +R +   KLYRLQTP SP
Sbjct: 605 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYRDRSDNKLYRLQTPQSP 664

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+
Sbjct: 665 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 724

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 725 L--------SEKIKQGDDSLV----------------------------FGVKPGDPRIV 748

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G  
Sbjct: 749 QKLDDDGLPFIGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKF 808

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 809 --KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 866

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 867 RMTIGML 873



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|402891934|ref|XP_003909183.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Papio anubis]
          Length = 1079

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 378/968 (39%), Positives = 525/968 (54%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S P+LK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+  A I + 
Sbjct: 8   RNLPSGPTLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQ--ADINWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G  +   I+K  +                Y P                          
Sbjct: 66  VNG--ISKGIIKQCLG---------------YVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLHSLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               T+  +   ++   F     
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLFATGNLRS--KTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A IP++L +LG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+V +  
Sbjct: 485 PVDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 724 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|301781943|ref|XP_002926383.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           2 [Ailuropoda melanoleuca]
          Length = 1079

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 378/968 (39%), Positives = 520/968 (53%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           QN  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+  A I + 
Sbjct: 8   QNLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQ--ADISWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G  +   I+K                F  Y P                          
Sbjct: 66  VNG--ISRGIIK---------------QFLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLHSLPPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN P+A+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPVAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLSLPDWYPNE-QAAEFLFDQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K    T+  +   ++   F   + 
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMKIFSLGTD 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A +P++L SLG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASVPALLCSLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++  ++A S+   LR  K++ EK IP  +E+  +  
Sbjct: 485 PVDGAPHRPYAECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+TTH+
Sbjct: 545 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNIAIFEDEVLAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D  +                            FG  P +  +
Sbjct: 724 DL--------SEKIKQGDDSLV----------------------------FGVKPGDPRI 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGK 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|326915056|ref|XP_003203837.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
           subunit RPA2-like [Meleagris gallopavo]
          Length = 1048

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 355/878 (40%), Positives = 494/878 (56%), Gaps = 99/878 (11%)

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
           K +P E R  RS Y G   V ++WS +G   G+  + VG +PIM+KSK C+L NL+P +L
Sbjct: 10  KVFPAECRGXRSTYRGRLTVDISWSLNGIPQGSIKQPVGYIPIMVKSKLCNLYNLSPQEL 69

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
           I+  E  +E GGYFI+ G EK++R+LI  RRN P+A+ R+ WKNRG  F++ GV +  VK
Sbjct: 70  IQHHEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAMTRHKWKNRGPGFTEYGVVLHCVK 129

Query: 248 RDESATNNVLHFVTNGSARFMFSHRKSM-------------------------------- 275
            + SA N  LH++ NG     F  +K +                                
Sbjct: 130 DEHSAINMNLHYLENGCVMMNFIFQKELFFLPLGFALKALVNFTDYQIFEELVKDKKNDT 189

Query: 276 ----CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPH 331
               C+  M++++ E G +TQ +   + G+ F+ KL     + NE +  D++   CI  H
Sbjct: 190 FYVNCVTEMLRAVAEAGCYTQQNVLEYLGKSFRVKLNLPEWYSNE-QAADFIFNKCICIH 248

Query: 332 LDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------- 383
           L D  +KF  L  MT KL+   +G    D+ DS+M QE++T G L+L  LK+        
Sbjct: 249 LTDRTEKFYLLCMMTRKLYAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQS 308

Query: 384 -----EKSGTSA---VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGF 435
                EK    A   +  +S + A    + +  +    LATGN+ +   + L ++Q SG 
Sbjct: 309 VKFILEKRTEKADININTDSLMKAFSLTTDVTKSFEYLLATGNLRS--KTGLGMLQDSGL 366

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            ++ + +N +RY+SHFR +HRGS F +MR++  R+L  ++WGF+CPV TPDG PCGL+NH
Sbjct: 367 CVVGDKLNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNH 426

Query: 496 LTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQI 554
           +T  C+I +E +P   +  +P +L +LG++P+         +   V+LDG +VG++   +
Sbjct: 427 MTAVCEIVTEMVP---VTDLPPLLCALGVVPIDATPSKPYAECYRVVLDGAVVGWVEWDL 483

Query: 555 ATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
           A  +   LR  KI  EK  P   E+V +    K   LYPGL++FT P RM+RPV NL  G
Sbjct: 484 APQVAEALRRFKITQEKRFPARAEVVLIPMTGKP-SLYPGLFIFTTPCRMVRPVKNLLYG 542

Query: 614 NIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
             EWIGT EQVFM++     +  PG+TTH+EL     LS +ANLIP  D NQSPRNMYQC
Sbjct: 543 RKEWIGTLEQVFMNVATMESDVVPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQC 602

Query: 674 QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
           QMGKQTMG P  N++ +   KLY L TP SP  RP  YD   MD++P+GTN++VAVISY+
Sbjct: 603 QMGKQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYS 662

Query: 734 GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG 793
           GYDMEDAMI+NKSS+ERGFA+G + K   I+L    +  G   +                
Sbjct: 663 GYDMEDAMIVNKSSWERGFAYGSVIKMESIDLSLKASRGGDNLV---------------- 706

Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
                               FG  P +  +++KL  DGL +VG+ L   DP YSY   + 
Sbjct: 707 --------------------FGIRPGDPNIKEKLDADGLPFVGSILQPGDPFYSYMNLNT 746

Query: 854 NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKG 913
               T  Y  KE   V+ +++ S     G     C  I  R+ RNPTVGDKFASR GQKG
Sbjct: 747 GETFTVYYQNKEVGIVDNIKLCSNDRGTGKFKKAC--ITVRVPRNPTVGDKFASRHGQKG 804

Query: 914 ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           I S  WP ED+PFT++G+VPDI+FNPHGFPSRMTIG L
Sbjct: 805 ILSQLWPVEDMPFTENGMVPDILFNPHGFPSRMTIGML 842



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           + +GYN++GTE MYSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD       
Sbjct: 880 VSAGYNFFGTEKMYSGISGVELEADIFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPV 939

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSS 876
                +G +  G    ERD + ++       +R  +C    +  +C     M S
Sbjct: 940 KGRNVEGGIRFGEM--ERDALLAHGTSFLLHDRLFSCSDGSEAYVCTSCGSMLS 991


>gi|350581976|ref|XP_003481167.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Sus scrofa]
          Length = 1079

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 380/968 (39%), Positives = 519/968 (53%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+  A I + 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQ--ADISWA 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +           F  Y P                          
Sbjct: 66  VNG------ISKGVIKQ-----------FLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+L +L+P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLYSLSPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCATQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ K+     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 251 RFRVKVNLPDWYPNE-QAAEFLFNECICIHLKSNTEKFYMLCLMTRKLFALAKGECMEEN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK               K+   TS  L   ++         
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKAQKTSVSLNTENLMKILNLGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C+ +++++ +   A IP++L SLG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTATCEVVTQFVYT---ASIPALLCSLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG+   ++A S+   LR  K++ EK IP  +E+V +  
Sbjct: 485 PVDSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSLRHFKVLREKRIPPWMEVVLIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGLYLFT P R++RPV NL  G  E IGT EQ+FM++ I   E   G+TTH+
Sbjct: 545 TGKP-SLYPGLYLFTTPCRLVRPVQNLGLGREELIGTMEQIFMNVAIFEDEVLAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMILNK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D  +                            FG  P +  +
Sbjct: 724 DL--------SEKIKQGDDSLV----------------------------FGVRPGDPRV 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL +VGA+L   DP YSY   +        Y  KE   V+ +++    T  G 
Sbjct: 748 AQKLDDDGLPFVGAQLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGR 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 913 AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 963


>gi|359321639|ref|XP_003639649.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           2 [Canis lupus familiaris]
          Length = 1079

 Score =  633 bits (1633), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 372/967 (38%), Positives = 510/967 (52%), Gaps = 154/967 (15%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           QN  S PSLK+LT+ ++G P ++Q   L  L   H+        E  + AV         
Sbjct: 8   QNLPSGPSLKHLTNPSYGIPQEQQKPALQELTRAHV--------ESFNYAV--------- 50

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
                                                   R   S      ++W+ +G +
Sbjct: 51  ----------------------------------------REGLSHAVQADISWAVNGIS 70

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G +PIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 71  KGIIKQFLGYIPIMVKSKLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 RFRVKLSLPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K    T+  +   ++   F   + 
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMRIFNLGTD 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++         A +P++L SLG+ P
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEV--VTQCVYTASVPTLLCSLGVTP 485

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG +VG++  ++A S+   LR  K++ EK IP  +E+  +   
Sbjct: 486 VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIAESLRHFKVLKEKRIPPWMEVALIPMT 545

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+TTH+E
Sbjct: 546 GKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNIAIFEDEVLAGVTTHQE 604

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP
Sbjct: 605 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSP 664

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+
Sbjct: 665 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 724

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 725 L--------SEKIKQGDDSLV----------------------------FGVKPGDPRIL 748

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G  
Sbjct: 749 QKLDDDGLPFIGARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNGRF 808

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 809 --KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 866

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 867 RMTIGML 873



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|395853612|ref|XP_003799298.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Otolemur
           garnettii]
          Length = 1078

 Score =  633 bits (1633), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 372/968 (38%), Positives = 510/968 (52%), Gaps = 156/968 (16%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  + PSLK+LTD ++G PP+ Q   L  L   H+        E  + AV         
Sbjct: 8   RNLPTGPSLKHLTDSSYGIPPEAQKAALQELTRAHV--------ESFNYAV--------- 50

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
                                                   R   S      ++W+ +G +
Sbjct: 51  ----------------------------------------REGLSHAVQADISWAVNGIS 70

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   +  G VPIM+KSK C+L  L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 71  KGIIKQSFGYVPIMVKSKLCNLDGLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  G+ +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMIRPKWKSRGPGYTQYGISMHCVREEHSAVNMNLHYLENGTVTLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVTEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  ++++  CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 251 CFRVKLNLPDWYPNE-QAAEFLVNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K+   T+  +   ++   F   S 
Sbjct: 310 PDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTLGSD 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTRPFEYLFATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +     IP +L SLG+ 
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---TSIPVLLCSLGVT 484

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+  +  
Sbjct: 485 PVDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGIAHSLRHFKVLREKRIPPWMEVALIPM 544

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGLYLFT P R++RPV NL  G  E IGT EQ+FM+I I   E   G+TTH+
Sbjct: 545 TGKA-SLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNIAIFEDEVIAGVTTHQ 603

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 604 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 663

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 664 PLVRPCMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 723

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D  +                            FG  P +  +
Sbjct: 724 DL--------SEKIKQGDDSLV----------------------------FGVKPGDPRI 747

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             KL  DGL ++GAKL   DP Y Y   +        Y  KE   V+ +++ S  T  G 
Sbjct: 748 LQKLDDDGLPFIGAKLQYGDPYYGYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGR 807

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
               C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFP
Sbjct: 808 F--KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPTEDMPFTESGMVPDILFNPHGFP 865

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 866 SRMTIGML 873



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 912  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 971

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 972  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLE 1025


>gi|389746920|gb|EIM88099.1| DNA-directed RNA polymerase I polypeptide 2 [Stereum hirsutum
           FP-91666 SS1]
          Length = 1233

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 376/987 (38%), Positives = 553/987 (56%), Gaps = 124/987 (12%)

Query: 51  DKNFGKPPDKQNE--FLLTLGAPHIASFDFMLDEG------------LDLAVEDIAP-IE 95
           +K F +PP K N    L    APHI SF+ + D+             L L ++DI   + 
Sbjct: 22  EKTFRRPPSKSNTVPILQEFVAPHIESFNALFDDSGLPWGDGNGHGLLSLGLKDIGERVM 81

Query: 96  FE---------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFN 146
           F+          +G  + + I + +I+ P VP         K +PTEAR+  + Y G   
Sbjct: 82  FDRDPSKAAAGSWGNRMSIWIEQVSIARPMVPDKDRQATERKVFPTEARERLTSYRGRMT 141

Query: 147 VTVAWSWDGKAG-GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
           + + W  D      T T++ G VPIM++S RC+LR+++ A+L++  E P+E+GGYF++ G
Sbjct: 142 IKICWKLDSDPQPRTLTRDCGLVPIMVRSVRCNLRSMSSAELVKHHEEPEEFGGYFVING 201

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +E+L+R LI  RRNH +A+ R ++  RG  ++   V IR V+ D++A  N LH+++NGSA
Sbjct: 202 NERLIRYLILPRRNHVVALSRPSFVGRGPSYTPYAVQIRCVRPDQTAVTNTLHYLSNGSA 261

Query: 266 RFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--------KLQYDLRHL--- 314
            F FS RK   ++ +M  L  + + +  D ++F G + ++        +++  LR     
Sbjct: 262 MFRFSWRKQEYVIPIMLIL--KALVSASDMEIFEGVMMQDYDNTFLTDRVELLLRSFKMY 319

Query: 315 --------------------------NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCK 348
                                     N   I  +++   +L HLDD  +KF  L  M  K
Sbjct: 320 SLYTGDQCLDYLGDKFRVVLGLPEDWNNQAIGAWIIHKLVLVHLDDVREKFRMLLFMLRK 379

Query: 349 LFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAVL 392
           L+ +V     +D+ DS   QE++  G LY  ++K++                + G S+V 
Sbjct: 380 LYSIVSKSCCVDNPDSPQHQEVLLPGQLYGMIIKEKLEDALNQIRTQVALDVRRGDSSVD 439

Query: 393 KESDIYAAFRASSIE----SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
            ++D Y     + +     + M+NFLATGN+ +   + L L QASGF I+AE +N  RY+
Sbjct: 440 FQNDRYITKIINKVNFDIGAKMSNFLATGNLVS--PTGLDLQQASGFTIVAEKLNWHRYI 497

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
           SHFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL+  C+I      
Sbjct: 498 SHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRTCRI--VTAP 555

Query: 509 KVLAQIPSVLVSLGMLPL--TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
             +A +PS+L+  GM     T V  S   + L V LDGR++G+    +A +L   LR+ K
Sbjct: 556 LAVAHLPSLLIEHGMTQAFSTSVDGS---KNLCVQLDGRVIGWARPFVAKTLATNLRIWK 612

Query: 567 IVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
             G+  +P  LEI ++   E G   YPGL+LF+   RM+RPV  L  G  + +G+FEQV+
Sbjct: 613 TEGKHNVPLDLEIGFVPASEGGQ--YPGLFLFSSRARMMRPVKYLPNGRDDQVGSFEQVY 670

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           MDI +T +E  P +++H E S T+FLS LAN+ P  D NQSPRN+YQCQMGKQTMGTP  
Sbjct: 671 MDIAVTPEEIEPSVSSHVEHSPTNFLSILANMTPFSDFNQSPRNIYQCQMGKQTMGTPAT 730

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             R++   KLYRLQ+  SP  RP  ++T  MD+FP GTNAIVAVISYTGYDMEDAMILNK
Sbjct: 731 ALRHRTDNKLYRLQSGQSPVVRPALHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNK 790

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGFA+G ++KS  I+L+             G   +     + FG+ +  +      
Sbjct: 791 SAHERGFAYGTVYKSQIIDLKE----------QKGAIKATSAPTLHFGLGYEIKTE---G 837

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE-NRYVTCRYSGK 864
           DK  +   F            L  DGL  +GA+LN  DP+ +Y  ++   R    +Y G 
Sbjct: 838 DKKHSCVEF------------LDLDGLPNIGARLNPGDPIAAYTDDTTGGRTKFVKYKGD 885

Query: 865 EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
           E   +E VR+    ++ G       +I  RI R+P +GDKF+SR GQKG+CS KWPA D+
Sbjct: 886 EVAYIEEVRLLG--SDAGDAELQKIHITLRITRSPVIGDKFSSRHGQKGVCSQKWPAIDM 943

Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 944 PFSESGMQPDVIINPHAFPSRMTIGML 970



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            L +GYNY+G+E MYSG+ G    A I+FGVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 1008 LAAGYNYHGSEPMYSGITGQEFAADIYFGVVYYQRLRHMVLDKFQVRTTGPVDPLTR 1064


>gi|426223599|ref|XP_004005962.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Ovis aries]
          Length = 1079

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 380/967 (39%), Positives = 514/967 (53%), Gaps = 154/967 (15%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+  A I + 
Sbjct: 8   RNLPSGPSLKHLTDSSYGIPREQQKPALQELTRAHVESFNYAVSEGLSHAVQ--ADISWS 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G      I K  I +           F  Y P                          
Sbjct: 66  VNG------ISKGVIKQ-----------FLGYVP-------------------------- 82

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                       IM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 83  ------------IMVKSKLCNLYSLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 131 RNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 190

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFALKALVSFSDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++
Sbjct: 251 RFRVKLNLPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEEN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-S 405
            DS+M QE++T G L+L  LK               K+   T+  L   ++   F     
Sbjct: 310 PDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSLGID 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++     S   A IP++L SLG+ P
Sbjct: 428 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEV--VTQSVYTASIPALLCSLGVTP 485

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
           +         +   V+LDG ++G+   +IA  +   LR  K++ EK IP  +E+V +   
Sbjct: 486 VDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVVLIPMT 545

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGLYLFT P R++RPV NL  G  E IGT EQ+FM++ I   E   G+TTH+E
Sbjct: 546 GKP-SLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVLAGVTTHQE 604

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP
Sbjct: 605 LFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSP 664

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+
Sbjct: 665 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 724

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG    +  + 
Sbjct: 725 L--------SEKIKQGDDSLV----------------------------FGVKAGDPRVM 748

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++GA+L   DP YSY   +        Y  KE   V+ +++ S  T  G  
Sbjct: 749 QKLDDDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF 808

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 809 --KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPS 866

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 867 RMTIGML 873



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|320165771|gb|EFW42670.1| DNA-directed RNA polymerase I complex subunit Rpa2 [Capsaspora
           owczarzaki ATCC 30864]
          Length = 1126

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 351/955 (36%), Positives = 528/955 (55%), Gaps = 107/955 (11%)

Query: 58  PDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAP-IEFEIYGKTLKLNIVKAAISEPK 116
           P +Q+  L  +  PH+ +F+FM+  GLDLAV D+ P I  +  G  L + I +A +  P+
Sbjct: 13  PAEQSRTLQDVTRPHVDAFNFMIKTGLDLAVADLDPKIITDRDGHKLTVWIDQAKVGYPR 72

Query: 117 VPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKR 176
           VP      +    +PTE R+  S Y    +VT+ W  D        +++G++PIM+KS+R
Sbjct: 73  VPDNEARRN-PAVFPTECRERASTYKSDLHVTLKWKVDDGPVNQTERKLGQIPIMVKSQR 131

Query: 177 CHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLF 236
           C+LR+L+P +L+   E  +E GGYFI+ G E+++R+L+  RRN+ +A+ R +++ RG  +
Sbjct: 132 CNLRDLSPTELVANQEEAEEMGGYFIINGIERIMRMLLLPRRNYVMALDRPSFRKRGPEY 191

Query: 237 SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG----------------- 279
           +  G  IR  + D+++    +HF+ +G+    FS+RK+  L+                  
Sbjct: 192 TTFGTMIRCTRLDQTSQTITVHFLQDGNCMVRFSYRKNEYLVPAVLILKALVTTTDQEIF 251

Query: 280 -------------------MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEIC 320
                              M++S  +  +H    ++VF G+ F+  L      +++ ++ 
Sbjct: 252 ERIVGSSKLDSFLTDRVELMLRSATDMHVHNSKQARVFLGERFRIALDVP-EDMSDEDVG 310

Query: 321 DYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQL 380
             +L   +L HLD+  DKF  L  M  KL+ VV G    ++ DS M  EI+T G LYL  
Sbjct: 311 RLLLRKLMLIHLDNDQDKFDLLVFMIQKLYKVVSGDCCTENADSPMNHEILTSGQLYLMF 370

Query: 381 LKKE--------KSGTSAVLKESDIYAAFRASS-------------IESAMTNFLATGNV 419
           LK++        K+  +  L+ +    +F A S             I   +   +ATGN+
Sbjct: 371 LKEKMEEYLTACKAVVAQDLRRNPEQVSFSAGSQYFTKSLSKNPVDIGRRLEYLMATGNL 430

Query: 420 SAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFI 479
           ++   + L L Q SGF ++A+ +N +RY+SHFR +HRG++F EM+++  R+L  +AWGF+
Sbjct: 431 ASA--TGLDLQQVSGFTVVADKLNFLRYLSHFRCIHRGAFFAEMKTTTVRKLLPEAWGFV 488

Query: 480 CPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM 539
           CPVHTPDG PCGLLNHL   C + + +     +++P++L+ LGM P+   I   P   L 
Sbjct: 489 CPVHTPDGAPCGLLNHLAAKCLVVDEVADA--SRVPAMLIELGMAPIDHKIH-YPSDYLN 545

Query: 540 VMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFT 598
           V+LDGRI+G +  + A  +    R  K  G K +P+ +E   +   E+G   +PGL++FT
Sbjct: 546 VLLDGRIIGKLAPENAAQITAHFRYRKAQGHKDLPRYMESALVLPSERGQ--FPGLFIFT 603

Query: 599 GPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLI 658
              RM+RPV NL A  +E+IG+FEQV+MDI +   +  PG+TTH ELS T  LS  A + 
Sbjct: 604 SLCRMVRPVQNLIANTVEYIGSFEQVYMDIAVLEADIVPGVTTHHELSPTAMLSVNALMT 663

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P  D NQSPRNMYQCQMGKQTMGTP    +++   KLYR+  P +   RP  Y+    DN
Sbjct: 664 PYSDHNQSPRNMYQCQMGKQTMGTPAHALQHRSDNKLYRVMNPQASLVRPQGYEDYKCDN 723

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE---LESGYNYYGTE 775
           +P GTNA++A +SYTGYDMEDAMI+NK SY+RGF +  I+K+  ++   L+ G       
Sbjct: 724 YPSGTNAVIAFVSYTGYDMEDAMIINKGSYDRGFGYATIYKTQIVDLAKLKPGNRENSKP 783

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYV 835
           T+Y             FG V  QR                     +  E ++  DG   +
Sbjct: 784 TLY-------------FGTVRNQR---------------------EVTEKQVEADGFPPL 809

Query: 836 GAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRI 895
              L    P+ SY  E+ N     +Y   EE  +  +++ +G  EG       A I +R+
Sbjct: 810 ETVLKNGAPICSYVDETTNMAQVVKYKSSEEGYLHEIKLIAG--EGSDQRAQRAIIRFRL 867

Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
           +RNP +GDKFASR GQKG+CS  WP+E +PF +SG+VPDI+FNPHGFPSRMTIG 
Sbjct: 868 RRNPVIGDKFASRHGQKGVCSQLWPSEGMPFCESGMVPDILFNPHGFPSRMTIGM 922



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG+E MYSGV G    A+IF GVV+YQRLRHMV DK+Q +
Sbjct: 962  KAGYNYYGSERMYSGVTGKEFDAEIFMGVVYYQRLRHMVLDKYQVR 1007


>gi|13929088|ref|NP_113961.1| DNA-directed RNA polymerase I subunit RPA2 [Rattus norvegicus]
 gi|3914801|sp|O54888.1|RPA2_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
           polymerase I subunit 2; AltName: Full=A127; AltName:
           Full=RPA135
 gi|2739048|gb|AAB94600.1| RNA polymerase I 127 kDa subunit [Rattus norvegicus]
          Length = 1135

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 373/973 (38%), Positives = 511/973 (52%), Gaps = 110/973 (11%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++  PP++Q   L  L   H+ SF++ + EGL  AV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYAVPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + + L IV AAIS P VP G +    N  YP E R  RS Y G     ++W+ +G  
Sbjct: 68  FKDERISLTIVDAAISPPAVPKGTICKELN-IYPAECRGRRSTYRGKLTADISWAVNGVP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK+RGL ++  GV I  V+ + SA N  LH+V NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG HTQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + N  E  +++   CI  HL    DKF  L  MT KLF + +G    D+
Sbjct: 307 RFRVKLSLPDWYPN-AEAAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
            DS++ QE++T G L+L  LK               K    T+  +   ++   F   + 
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSMGTE 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +       LATGN+ +   + L  MQ SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGLLNHLT  C+ +++++ +   A IP++L  LG+ 
Sbjct: 484 TTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYT---ASIPALLCGLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
           P+             V+LDG +VG++  ++A  +   LR  K++ E+   SL+       
Sbjct: 541 PVDAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRCSSLDGGGPDSH 600

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY------PG 638
           ++     P         +         AG       +     + C      +      PG
Sbjct: 601 DRKAKPVPRAVPLHHSLQAGEACAEPGAGQRRARWNYGAALHEHCHLRGRGFWWSFHTPG 660

Query: 639 ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
               +          +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRL
Sbjct: 661 ALPSQPAEV------IANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRL 714

Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
           QTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++
Sbjct: 715 QTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVY 774

Query: 759 KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           KS FI+L        +E    G D  +                            FG  P
Sbjct: 775 KSEFIDL--------SEKFKQGDDSLV----------------------------FGVKP 798

Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
            +  +  KL  DGL ++GAKL   DP Y Y   +        Y  KE   V+ +++ S  
Sbjct: 799 GDPRVMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSND 858

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
           T  G     C  +  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG++PDI+FN
Sbjct: 859 TGSGKF--KCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFN 916

Query: 939 PHGFPSRMTIGFL 951
           PHGFPSRMTIG L
Sbjct: 917 PHGFPSRMTIGML 929



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 969  AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082


>gi|410955302|ref|XP_003984295.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Felis catus]
          Length = 1079

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 357/869 (41%), Positives = 492/869 (56%), Gaps = 99/869 (11%)

Query: 137 TRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDE 196
            R   S      ++W+ +G + G   + +G VPIM+KSK C+L NL P  LIE  E  +E
Sbjct: 50  VREGLSHAVQADISWAVNGISKGVIKQFLGYVPIMVKSKLCNLYNLPPKALIEHHEEAEE 109

Query: 197 WGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV 256
            GGYFI+ G EK++R+LI  RRN PIA+ R  WK RG  ++  GV +  V+ + SA N  
Sbjct: 110 MGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTQYGVSMHCVREEHSAVNMN 169

Query: 257 LHFVTNGSARFMFSHRKSMCLL------------------------------------GM 280
           LH++ NG+    F +RK +  L                                     M
Sbjct: 170 LHYLENGTVMLNFIYRKELFFLPLGFALKALVNFSDYQIFQELIKGKEEDSFFRNSISQM 229

Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFL 340
           ++ + EEG  TQ     + G+ F+ KL     + NE +  +++   CI  HL    +KF 
Sbjct: 230 LRIVMEEGCSTQKQVLNYLGECFRVKLSLPDWYPNE-QAAEFLFNQCICIHLKSSTEKFY 288

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAA 400
            L  MT KLF + +G    ++ DS++ QE++T G L+L  LK++       +K +    A
Sbjct: 289 MLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKIALDKRA 348

Query: 401 FRAS---SIESAMTNF-------------LATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            +A+   + E+ M  F             LATGN+ +   + L  +Q SG  ++A+ +N 
Sbjct: 349 QKANVSINTENLMKIFSMGTDLTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNF 406

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-S 503
           +RY+SHFR VHRG+ F +MR++  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ +
Sbjct: 407 IRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVT 466

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
           +++ +   A IP++L SLG+ P+         +   V+LDG +VG++   +A  +   LR
Sbjct: 467 QFVYT---ASIPALLCSLGVTPVDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGVADSLR 523

Query: 564 MLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFE 622
             K++ EK IP  +E+  +    K   LYPGL+LFT P R++RPV NL  G  E IGT E
Sbjct: 524 HFKVLREKRIPPWMEVALIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTME 582

Query: 623 QVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
           Q+FM+I I   E   G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG 
Sbjct: 583 QIFMNIAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGF 642

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
           P L ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI
Sbjct: 643 PLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMI 702

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           +NK+S+ERGFAHG ++KS FI+L        +E +  G D  +                 
Sbjct: 703 VNKASWERGFAHGSVYKSEFIDL--------SEKIKQGDDSLV----------------- 737

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
                      FG  P +  +  KL  DGL ++GA+L   DP Y Y   +        Y 
Sbjct: 738 -----------FGVKPGDPRVLQKLDDDGLPFIGAQLKYGDPYYGYLNLNTGENFVIYYK 786

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
            KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WPAE
Sbjct: 787 SKENCIVDNIKVCSNDTGSGKF--KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 844

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PF++SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 845 DMPFSESGMVPDILFNPHGFPSRMTIGML 873



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLE 1026


>gi|449496428|ref|XP_004175182.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
           subunit RPA2 [Taeniopygia guttata]
          Length = 1059

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 355/897 (39%), Positives = 489/897 (54%), Gaps = 100/897 (11%)

Query: 110 AAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRV 168
             +  P  P  P  +   K   P E R  RS Y G     ++WS +    GT    +G +
Sbjct: 3   GGVHHPSPPCRPGTVXQKKRMVPAECRGVRSTYRGRITADISWSLNDMPQGTIKHPLGYI 62

Query: 169 PIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNA 228
           PIM+KSK C+L   +P  L++  E  +E GGYFI+ G EK+VR+LI  RRN P+A+ R  
Sbjct: 63  PIMVKSKLCNLYGFSPQDLMQHHEEEEEMGGYFIINGLEKVVRMLIMPRRNFPLAMTRQK 122

Query: 229 WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------------- 275
           WKNRG  F++ GV +  VK + +A N  LH++ NG     F  RK +             
Sbjct: 123 WKNRGPGFTEYGVVMHCVKDEHTAINMNLHYLENGCVMVNFIFRKELFFLPLGFALKALV 182

Query: 276 -----------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLR 312
                                  C+  M++++ + G  TQ +   + G+ F+ KL     
Sbjct: 183 NFPDYQIFEELVKGREDDTFYANCVTEMLRAVVDAGCLTQQNVLDYLGKSFRVKLNLPEW 242

Query: 313 HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMT 372
           + NE +  D++L+NCI  HL +  +KF  L  MT KL+   +G    D+ DS+M  E++T
Sbjct: 243 YSNE-QAADFLLSNCICIHLTNRTEKFYLLCMMTQKLYAFAKGECMEDNPDSLMNHEVLT 301

Query: 373 GGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASSIESAMTNFLAT 416
            G L+L  LK               K     +  L    +  AF  A          LAT
Sbjct: 302 PGQLFLMFLKERLETWLQSVRFVLEKRAEKANTTLNTDSLVKAFSLAPDFTRPFEYLLAT 361

Query: 417 GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
           GN+ +   + L ++QASG  ++ + +N +RY+SHFR +HRG+ F +MR++  R+L  ++W
Sbjct: 362 GNLRS--KTGLGMLQASGLCVVGDKLNFIRYLSHFRCIHRGAAFSQMRTTTVRKLLPESW 419

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE 535
           GF+CPV TPDG PCGL+NH+T  C+I +E +P +    IP +L SLG+ P+         
Sbjct: 420 GFLCPVDTPDGEPCGLMNHMTALCEIVTEMVPVR---DIPPLLCSLGVTPIDAAPSRPYS 476

Query: 536 QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGL 594
           +   V+LDG +VG++  ++A  +   LR  KI  EK  P   E+V +    K   LYPGL
Sbjct: 477 ECYRVVLDGSMVGWVEQELAPEIAETLRRFKITQEKRFPARAEVVLIPMTGKP-SLYPGL 535

Query: 595 YLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNL 654
           ++FT P RM+RPV NL+ G  EWIGT EQ+FM++     E  PG+TTH+EL     LS +
Sbjct: 536 FIFTNPCRMVRPVRNLSYGRNEWIGTLEQIFMNVATLESEVVPGVTTHQELFPHSILSVV 595

Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
           ANLIP  D NQSPRNMYQCQMGKQTMG P  N++ +   KLY L TP SP  RP  YD  
Sbjct: 596 ANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYHLHTPQSPLVRPSMYDYY 655

Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
            MD++P+GTN+IVAVISY+GYDMEDAMI+NKSS++RGFA+G + K+  I+L    +  G 
Sbjct: 656 GMDSYPVGTNSIVAVISYSGYDMEDAMIVNKSSWQRGFAYGSVIKAESIDLSLKASRAGD 715

Query: 775 ETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVY 834
             +                                    FG  P +  + +KL  DGL +
Sbjct: 716 NLV------------------------------------FGIKPGDPNIGEKLDADGLPF 739

Query: 835 VGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
           VG+ L   DP YS+   +     T  Y  KE   V+ VR+ S     G     C  I  R
Sbjct: 740 VGSILQPGDPFYSFMNLNTGETFTVYYPSKEVGIVDNVRLCSNDRGTGKFKKVC--ITVR 797

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           + RNPT+GDKFASR GQKGI S  WP ED+PFT++G+VPDI+FNPHGFPSRMTIG L
Sbjct: 798 VPRNPTIGDKFASRHGQKGILSQLWPVEDMPFTENGMVPDILFNPHGFPSRMTIGML 854



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN++GTE MYSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 894  AGYNFFGTEKMYSGISGVELEADIFVGVVYYQRLRHMVSDKFQVRTTGPRDAVTNQPVKG 953

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               +G +  G    ERD + ++      ++R   C       +C     M+S   E
Sbjct: 954  RNVEGGIRFGEM--ERDALLAHGTSFLLQDRLFNCSDGSVAYVCTSCGSMTSPVLE 1007


>gi|390601556|gb|EIN10950.1| DNA-directed RNA polymerase I polypeptide 2 [Punctularia
           strigosozonata HHB-11173 SS5]
          Length = 1227

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 373/976 (38%), Positives = 543/976 (55%), Gaps = 126/976 (12%)

Query: 62  NEFLLTLGAPHIASFDFMLDEG------------LDLAVEDIAP-IEFEI---------- 98
           NEF+L    PHI SF+ + D+             L LA++DI   + F+           
Sbjct: 35  NEFVL----PHIESFNALFDDSGLPKGDGNGKGLLSLALKDIGERVVFDGTGELGNVSGQ 90

Query: 99  --YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
             +G  L ++I +  ++ P V      +   + +P+EAR+  + Y G   + + ++ +  
Sbjct: 91  SGWGNRLAISIEEVTVARPMVSERAKAVVEPRIFPSEARERLTSYRGRMYIKLNFTLNDN 150

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
              T  K+ G +PIM++S RC+LR+++ A+L+ R E P+E+GGYFI+ G+E+L+RLLI  
Sbjct: 151 PVRTIQKDCGLLPIMVRSVRCNLRSMSSAELVARHEEPEEFGGYFIINGNERLIRLLILP 210

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
           RRNH I++ R +W NRG  ++   V IR V+ D++A  N LH++ NG+A   F+ RK+  
Sbjct: 211 RRNHAISLFRPSWANRGPSYTPYAVQIRCVRPDQTAATNTLHYLQNGNAVLRFTWRKNEY 270

Query: 277 LLGMMQSLHEEGIHTQHDSKVFFG--------QIFKEKLQYDLRHL-------------- 314
           ++ +M  L  + +    D ++F G            ++++  LR                
Sbjct: 271 VIPVMLIL--KALVGASDKEIFEGLAMCDYENTFLTDRIEMLLRGFKTYSLYTGTQCLEY 328

Query: 315 ---------------NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
                             EI D++L   +L HL D  DK+  L  M  KL+ +V G    
Sbjct: 329 LGDKFRVVLGCPEDWTNSEIGDWLLKKMVLAHLQDPRDKYRMLIFMLRKLYSLVSGSCAP 388

Query: 360 DSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASS-------------- 405
           D+ DS   QE++  G LY  ++K+      A ++ S IYA  R                 
Sbjct: 389 DNPDSPQHQEVLLPGHLYGMIIKERLEEVLAQIR-SQIYADVRREDPSIDFTDDRYINKV 447

Query: 406 -------IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
                  I + M+NFLATGN+ +   + L L Q SGF I+AE +N  RY+SHFR++HRG+
Sbjct: 448 LSRVNFDIGAKMSNFLATGNLIS--PTGLDLQQTSGFTIVAEKLNWQRYISHFRSIHRGA 505

Query: 459 YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSV 517
           +F E++++  R+L  +AWGF+CPVHTPDGTPCGLLNHL+  C+I +  +P   +A +P++
Sbjct: 506 FFAELKTTTVRKLLPEAWGFLCPVHTPDGTPCGLLNHLSRTCRIVTTPLP---VAHLPAL 562

Query: 518 LVSLGML-PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKS 575
           L   GM  P  P +       L V LDGR++G+    +A  L  +LR+ K  G   +P  
Sbjct: 563 LAEHGMSHPFAPSLDGRGHANLCVQLDGRVIGWARPAVALQLAERLRIWKTEGLHNVPLD 622

Query: 576 LEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEA 635
           LE+ Y+   E G   YPGLYLF+   RM+RPV  LA G  + IG+FEQV+MDI I  +E 
Sbjct: 623 LEVGYVPISEGGQ--YPGLYLFSTRARMMRPVRYLANGRDDMIGSFEQVYMDIAIKPEEI 680

Query: 636 YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
             G+++H E + T+FLS LANL P  D NQSPRN+YQCQMGKQTMGTP    R++   KL
Sbjct: 681 ELGVSSHVEHAPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPSTAIRHRTDNKL 740

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           YRLQ+  SP  RP  ++T  MD+FP GTNA+VAVISYTGYDMEDAMILNKS++ERGFA+G
Sbjct: 741 YRLQSGQSPVVRPKLHNTYGMDSFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFAYG 800

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
            I+KS  ++L+  +          G   S     + FG+         V  +  TK +  
Sbjct: 801 TIYKSQTVDLQEQH----------GASKSRTSPTLHFGI------GDDVIVEAGTKQHH- 843

Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
                    + L  DGL  +G +L+  DP+ +Y  ++ +R    +Y G E   V+ VR+ 
Sbjct: 844 -------CVEFLDMDGLPRIGTRLSTGDPIAAYIDDTTHRTRFVKYKGDEVAYVDEVRLL 896

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
               + G       +I  RI R P +GDKF+SR GQKG+CS KWPA D+PF++SG+ PD+
Sbjct: 897 G--DDAGDSELQKIHITLRIARAPVIGDKFSSRHGQKGVCSQKWPAIDMPFSESGMQPDV 954

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPH FPSRMTIG L
Sbjct: 955 IINPHAFPSRMTIGML 970



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            L +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +     DP  +
Sbjct: 1008 LAAGYNYYGNEPMYSGITGQEFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVDPVTR 1064


>gi|426192462|gb|EKV42398.1| hypothetical protein AGABI2DRAFT_188567 [Agaricus bisporus var.
           bisporus H97]
          Length = 1219

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 379/997 (38%), Positives = 558/997 (55%), Gaps = 128/997 (12%)

Query: 40  TLSAPSLKNLT-DKNFGKPPDKQ------NEFLLTLGAPHIASFDFMLDEG--------- 83
           T   P+   L  +K F  PP +       NEF+    APHI SF+ + D+          
Sbjct: 8   TRKKPTFNTLEREKAFRNPPKEGSVHAVLNEFV----APHIESFNALFDDSGLPPGDGDG 63

Query: 84  ---LDLAVEDIAP-IEFE-------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPT 132
              + LA++DI   + F+       + G  +++ I +A +++P+VP     I   + +P+
Sbjct: 64  RGLISLAIKDIGERVVFDGISHGTDLRGNRIRIWIEQATVAKPQVPERAQVIE-RRIFPS 122

Query: 133 EARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGE 192
           EAR+  + Y G   + + W+          K+ G +PIM++S RC+L+ L+ A L+ + E
Sbjct: 123 EARERLTSYRGRMTLKICWTDAHGQKNETIKDCGLLPIMVRSVRCNLKGLSSAALVAKHE 182

Query: 193 HPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESA 252
            P+E+GGYFI+ G+E+L+R LI  RRNH I++ R ++ NRGL ++   V IR V+ D+++
Sbjct: 183 EPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFANRGLSYTQYAVQIRCVRPDQTS 242

Query: 253 TNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE------- 305
             N LH+++NGSA   FS RK   ++ +M  L  + +    D ++F G I ++       
Sbjct: 243 ATNTLHYLSNGSAMLRFSWRKQEYVIPIMLIL--KAMVGASDKEIFEGVIMRDYENTFLT 300

Query: 306 -KLQYDLRH-----LNEVEIC-DYM-----------------------LTNCILPHLDDY 335
            +++  LR      LN  E C DY+                       +   IL HLD  
Sbjct: 301 DRVELLLRSFKVFTLNTGEQCLDYLGDKFRVVLNLPEDWTNTAIGKWLVQKMILVHLDSP 360

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------- 384
            DKF  L  M  KLF +V      D+ DS   QE++  G+LY  ++K+            
Sbjct: 361 RDKFRMLLFMLRKLFALVSSSCCADNPDSPQHQEVLLPGTLYGMIIKERMEEILNNICNT 420

Query: 385 -----KSGTSAVLKESDIYAAFRAS---SIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
                ++G +    +   +    +     I + + NFLATGN+ +   + L L QASGF 
Sbjct: 421 VMLDVRNGATVDFHDKRYFTKVTSKVNFDIGARLANFLATGNLIS--PTGLDLQQASGFT 478

Query: 437 IMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
           I+AE +N  RY+SHFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL
Sbjct: 479 IVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHL 538

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           +  C+I        +A +PS+L S GM  + TP I    ++ + V LDGRI+G+    +A
Sbjct: 539 SRTCRI--VTSPLAVAHLPSLLGSCGMTQVFTPSING--QKNISVQLDGRIIGWAQPSVA 594

Query: 556 TSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
           + L   LR+ K  G+  +P  LEI ++  PE   G YPGL+LF    RM+RPV  L  G 
Sbjct: 595 SQLAKNLRVWKTEGKNGVPLDLEIGFV--PESDGGQYPGLFLFANRSRMMRPVKYLPNGK 652

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
            + IG+FEQV+M++   + E     +TH E + T+FLS LANL P  D NQSPRN+YQCQ
Sbjct: 653 DDQIGSFEQVYMNVA-CLPEEIDANSTHVEHNPTNFLSILANLTPFSDFNQSPRNIYQCQ 711

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ+MGTP    +++   KLYRLQT  SP  RP+ ++T  MD++P GTNAIVAVISYTG
Sbjct: 712 MGKQSMGTPSTALKHRTDNKLYRLQTGQSPVVRPMLHNTYAMDSYPNGTNAIVAVISYTG 771

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDMEDAMILNKS++ERGFA+G ++KS  ++L+             G + S+    + FG+
Sbjct: 772 YDMEDAMILNKSAHERGFAYGTVYKSQIVDLKD----------MRGANKSVTAPSLHFGL 821

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN 854
               RL                D A+  + D L  DGL Y+G +L   DP+ +Y  E+  
Sbjct: 822 GPDVRLEG--------------DRAHHCV-DFLDLDGLPYIGTRLKAGDPIAAYIDETAG 866

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGI 914
           R    +Y G E   V+ VR+ +  ++ G       ++  RI R+P +GDKF+SR GQKG+
Sbjct: 867 RTKFVKYKGDEMAYVDEVRLLA--SDSGDTELQKMHVTLRITRSPVIGDKFSSRHGQKGV 924

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           CS KWPA D+PFT+SG+ PD++ NPH FPSRMTIG L
Sbjct: 925 CSQKWPAVDMPFTESGMQPDVIINPHAFPSRMTIGML 961



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 37/55 (67%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 1001 AGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDPITR 1055


>gi|409079585|gb|EKM79946.1| hypothetical protein AGABI1DRAFT_119994 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1219

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 379/997 (38%), Positives = 558/997 (55%), Gaps = 128/997 (12%)

Query: 40  TLSAPSLKNLT-DKNFGKPPDKQ------NEFLLTLGAPHIASFDFMLDEG--------- 83
           T   P+   L  +K F  PP +       NEF+    APHI SF+ + D+          
Sbjct: 8   TRKKPTFNTLEREKAFRNPPKEGSVHAVLNEFV----APHIESFNALFDDSGLPLGDGDG 63

Query: 84  ---LDLAVEDIAP-IEFE-------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPT 132
              + LA++DI   + F+       + G  +++ I +A +++P+VP     I   + +P+
Sbjct: 64  RGLISLAIKDIGERVVFDGISHGTDLRGNRIRIWIEQATVAKPQVPERAQVIE-RRIFPS 122

Query: 133 EARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGE 192
           EAR+  + Y G   + + W+          K+ G +PIM++S RC+L+ L+ A L+ + E
Sbjct: 123 EARERLTSYRGRMTLKICWTDAHGQKNETIKDCGLLPIMVRSVRCNLKGLSSAALVAKHE 182

Query: 193 HPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESA 252
            P+E+GGYFI+ G+E+L+R LI  RRNH I++ R ++ NRGL ++   V IR V+ D+++
Sbjct: 183 EPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFANRGLSYTQYAVQIRCVRPDQTS 242

Query: 253 TNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE------- 305
             N LH+++NGSA   FS RK   ++ +M  L  + +    D ++F G I ++       
Sbjct: 243 ATNTLHYLSNGSAMLRFSWRKQEYVIPIMLIL--KAMVGASDKEIFEGVIMRDYENTFLT 300

Query: 306 -KLQYDLRH-----LNEVEIC-DYM-----------------------LTNCILPHLDDY 335
            +++  LR      LN  E C DY+                       +   IL HLD  
Sbjct: 301 DRVELLLRSFKVFTLNTGEQCLDYLGDKFRVVLNLPEDWTNTAIGKWLVQKMILVHLDSP 360

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------- 384
            DKF  L  M  KLF +V      D+ DS   QE++  G+LY  ++K+            
Sbjct: 361 RDKFRMLLFMLRKLFALVSSSCCADNPDSPQHQEVLLPGTLYGMIIKERMEEILNNICNT 420

Query: 385 -----KSGTSAVLKESDIYAAFRAS---SIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
                ++G +    +   +    +     I + + NFLATGN+ +   + L L QASGF 
Sbjct: 421 VMLDVRNGATVDFHDKRYFTKVTSKVNFDIGARLANFLATGNLIS--PTGLDLQQASGFT 478

Query: 437 IMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
           I+AE +N  RY+SHFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL
Sbjct: 479 IVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHL 538

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           +  C+I        +A +PS+L S GM  + TP I    ++ + V LDGRI+G+    +A
Sbjct: 539 SRTCRI--VTSPLAVAHLPSLLGSCGMTQVFTPSING--QKNISVQLDGRIIGWAQPSVA 594

Query: 556 TSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
           + L   LR+ K  G+  +P  LEI ++  PE   G YPGL+LF    RM+RPV  L  G 
Sbjct: 595 SQLAKNLRVWKTEGKNGVPLDLEIGFV--PESDGGQYPGLFLFANRSRMMRPVKYLPNGK 652

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
            + IG+FEQV+M++   + E     +TH E + T+FLS LANL P  D NQSPRN+YQCQ
Sbjct: 653 DDQIGSFEQVYMNVA-CLPEEIDTNSTHVEHNPTNFLSILANLTPFSDFNQSPRNIYQCQ 711

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ+MGTP    +++   KLYRLQT  SP  RP+ ++T  MD++P GTNAIVAVISYTG
Sbjct: 712 MGKQSMGTPSTALKHRTDNKLYRLQTGQSPVVRPMLHNTYAMDSYPNGTNAIVAVISYTG 771

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDMEDAMILNKS++ERGFA+G ++KS  ++L+             G + S+    + FG+
Sbjct: 772 YDMEDAMILNKSAHERGFAYGTVYKSQIVDLKD----------MRGANKSVTAPSLHFGL 821

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN 854
               RL                D A+  + D L  DGL Y+G +L   DP+ +Y  E+  
Sbjct: 822 GPDVRLEG--------------DRAHHCV-DFLDLDGLPYIGTRLKAGDPIAAYIDETAG 866

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGI 914
           R    +Y G E   V+ VR+ +  ++ G       ++  RI R+P +GDKF+SR GQKG+
Sbjct: 867 RTKFVKYKGDEMAYVDEVRLLA--SDSGDTELQKMHVTLRITRSPVIGDKFSSRHGQKGV 924

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           CS KWPA D+PFT+SG+ PD++ NPH FPSRMTIG L
Sbjct: 925 CSQKWPAVDMPFTESGMQPDVIINPHAFPSRMTIGML 961



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 37/55 (67%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 1001 AGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDPITR 1055


>gi|295442842|ref|NP_595819.2| DNA-directed RNA polymerase I complex subunit Rpa2
           [Schizosaccharomyces pombe 972h-]
 gi|259016134|sp|Q9P7X8.2|RPA2_SCHPO RecName: Full=Probable DNA-directed RNA polymerase I subunit RPA2;
           AltName: Full=DNA-directed RNA polymerase I polypeptide
           2; Short=RNA polymerase I subunit 2
 gi|254745588|emb|CAB66435.2| DNA-directed RNA polymerase I complex subunit Rpa2
           [Schizosaccharomyces pombe]
          Length = 1174

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 377/986 (38%), Positives = 541/986 (54%), Gaps = 131/986 (13%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEGL-DLAVEDIA-PIEFEI-------- 98
           ++ F  PP     F  L     PH+ SF+ + + GL + AV++I     F+         
Sbjct: 9   ERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGA 68

Query: 99  --YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
             +G  +   + +  I++P + +        K YP EAR+  + Y     +  +WS +G 
Sbjct: 69  LKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGG 128

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
              +  +EVG +PIM++S RCHL  L+PA+LI   E  +E GGYFIV G EKL+R+LI  
Sbjct: 129 PRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILP 188

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK--- 273
           +RNHP AI R ++ NRG  +S  G+ IR V+ D+S+  N LH++ NG   F F  RK   
Sbjct: 189 KRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEY 248

Query: 274 ---SMCLLG------------------------------MMQSLHEEGIHTQHDSKVFFG 300
              SM +L                               M+++    G+++Q ++  + G
Sbjct: 249 LIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLG 308

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
             F+  L      L +VE+  ++L   +L HL +  DKF  L  M  KL+ +V G    D
Sbjct: 309 SKFRVVLGV-AEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLLFMIRKLYALVAGECCAD 367

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKE--------KSGTSAVLKESDIYAAFRA--------- 403
           + DS   QEI+ GG LY Q+LK++        ++  +  ++ S     F           
Sbjct: 368 NPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFS 427

Query: 404 ---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYF 460
              + I + +  FL+TGN+ +  N+ L L QA+G+ ++AE +N  R++SHFR VHRG++F
Sbjct: 428 KINNDIGTKLQYFLSTGNLVS--NTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFF 485

Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVS 520
            E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL   C+I  + PS V +QIPS+L+S
Sbjct: 486 AELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTH-PSDV-SQIPSLLLS 543

Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV------------ 568
           LG+ P  P +         V LDG+IVG+   ++A  +   LR++KI             
Sbjct: 544 LGVDP--PSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATE 601

Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI 628
             K+P  LEI Y+  P    G YPGLYLF+ P RM+RPV +++ G ++ +G FEQV+MDI
Sbjct: 602 PAKVPLDLEIGYV--PPSHNGQYPGLYLFSNPARMVRPVKHISTGELDMLGPFEQVYMDI 659

Query: 629 CITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
               KE  P ++TH E S T+ LS +AN+ P  D NQSPRNMYQCQMGKQTMGTP    R
Sbjct: 660 ACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALR 719

Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
           Y+   KLYRLQT  +P  RP  ++T  +D++P GTNA+VAVISYTGYDMEDAMILNKS++
Sbjct: 720 YRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAH 779

Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
           ERGF +G ++K    +L        ++    G             VVH+           
Sbjct: 780 ERGFGYGTVYKGESFDL--------SQKRRRGEP-----------VVHH----------- 809

Query: 809 QTKDYFGRDPANKALED---KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                FG  P +    +   KL  DGL ++G KL + DP+ +Y+ ES  +     Y G E
Sbjct: 810 -----FGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTE 864

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              V+ VR+     + G       ++  RI R+P +GDKF+SR GQKGICS KWP  D+P
Sbjct: 865 PGFVDEVRLLG--NDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMP 922

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           FT+SG+ PDI+ NPH FPSRMTIG  
Sbjct: 923 FTESGMQPDIIINPHAFPSRMTIGMF 948



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 39/47 (82%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  M+A I+ GVV+YQRLRHMVSDK+Q +
Sbjct: 986  VKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVR 1032


>gi|334312104|ref|XP_003339712.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           2 [Monodelphis domestica]
          Length = 1079

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 374/967 (38%), Positives = 512/967 (52%), Gaps = 154/967 (15%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  + PSLK+LT+  +G P ++Q   L  L   HI SF++ + EGL  AV+  A I + 
Sbjct: 8   RNLPTGPSLKHLTEPGYGLPKEQQLPALQELTRAHIESFNYAMREGLSHAVQ--ADISWS 65

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           + G                    P GI                                 
Sbjct: 66  VNGN-------------------PKGI--------------------------------- 73

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                + +G +PIM+KS+ C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 74  ---IKQSLGYIPIMVKSRLCNLYNLPPKSLIEHHEEAEEMGGYFIINGIEKIIRMLIMPR 130

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM-- 275
           RN PIA+ R  WK RG  ++  G+ +  V+ + +A N  LH++ NGS    F + K +  
Sbjct: 131 RNFPIAMIRPKWKTRGPGYTHYGISMHCVRDEHTAINMNLHYLENGSVMVNFIYHKELFF 190

Query: 276 ----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQ 301
                                             C+  M++ + EEG  TQ     + G+
Sbjct: 191 LPLGFVLKALVAFSDYQIFQELIKGREENSFFRNCVSQMLRVVMEEGCITQKQVLNYLGE 250

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + N V+  +++L  C+  HL    +KF  L  MT KLF   +     ++
Sbjct: 251 RFRVKLSLPDWYTN-VQAAEFLLNQCVCIHLKSNEEKFYVLCLMTRKLFTFAKEECMEEN 309

Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-S 405
            DS+M QE++T G L L  LK               K    T+  +   ++   F     
Sbjct: 310 PDSLMNQEVLTPGRLILMFLKEKMEAWLVSVKIALDKRAQKTNVSMNTENLMKIFSMGLD 369

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +      FLATGN+ +   + L ++Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 370 LTRPFEYFLATGNLRS--KTGLGMLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRT 427

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
           +  R+L  ++WGF+CPVHTPDG PCGL+NH+T  C++     +   + I  +L SLG+ P
Sbjct: 428 TTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAICEV--VTQAVYTSSIAPLLCSLGVTP 485

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
                     +   VML+G +VG++   +A ++   LR  K++G+K IP   EIV + + 
Sbjct: 486 FDGTPSQPYSECYPVMLNGIMVGWVEKDLAPAITDSLRNFKVLGKKQIPPWTEIVLIPKT 545

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
            K   LYPGL+LFT P RM+RPV NL  G  E IGT EQ+FM+I I   E  PGITTH+E
Sbjct: 546 GKP-SLYPGLFLFTTPCRMIRPVQNLELGKEELIGTLEQIFMNIAIFENEIVPGITTHQE 604

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           L     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP
Sbjct: 605 LFPHSLLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSP 664

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++K+  I+
Sbjct: 665 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKTELID 724

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L        +E +  G D  +                            FG  P +  + 
Sbjct: 725 L--------SEKIKQGDDSLV----------------------------FGVKPGDLRVL 748

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            KL  DGL ++G+ L   DP YSY   +        Y  KE   V+ +++ S  +  G  
Sbjct: 749 QKLDSDGLPHIGSLLKYGDPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDSGNGKF 808

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
              C  I  RI RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPS
Sbjct: 809 KSIC--ITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPS 866

Query: 945 RMTIGFL 951
           RMTIG L
Sbjct: 867 RMTIGML 873



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1026


>gi|348558605|ref|XP_003465108.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           2 [Cavia porcellus]
          Length = 1079

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 358/863 (41%), Positives = 480/863 (55%), Gaps = 97/863 (11%)

Query: 142 SGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYF 201
           S    V ++WS +G + G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYF
Sbjct: 55  SQAVQVDISWSVNGISRGVIKQFLGYVPIMVKSKLCNLHNLPPKALIEHHEEAEEMGGYF 114

Query: 202 IVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVT 261
           I+ G EK++R+LI  RRN PIA+ R  WK+RG  ++  GV I  V+ D SA N  LH++ 
Sbjct: 115 IINGIEKVIRMLIMPRRNFPIALVRPKWKSRGPGYTQFGVSIHCVRGDHSAVNMNLHYLE 174

Query: 262 NGSARFMFSHRKSMCLL------------------------------------GMMQSLH 285
           NG+    F +RK +  L                                     M++ + 
Sbjct: 175 NGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVM 234

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHM 345
           EEG  TQ     + G+ F+ KL     + NE +  +++   CI  HL    +KF  L  M
Sbjct: 235 EEGGSTQKQVLNYLGECFRIKLSLPDWYSNE-QAAEFLFNQCICIHLKSNTEKFHLLCFM 293

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSA 390
           T KLF + +G    ++ DS++ QEI+T G L+L  LK               K    T+ 
Sbjct: 294 TRKLFALAKGECLEENPDSLVNQEILTPGQLFLMFLKEKMEAWLVSVKIALDKRAQKTNV 353

Query: 391 VLKESDIYAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
            +   ++   F     +       LATGN+ +   + L  MQ SG  ++A+ +N +RY+S
Sbjct: 354 SINTENLMKIFSMGGDLTRPFEYLLATGNLRS--KTGLGFMQDSGLCVVADKLNFIRYLS 411

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           HFR VHRG  F +MR++  R+L  ++WGF+CPV+TPDG PCGL+NHLT  C++       
Sbjct: 412 HFRCVHRGGDFAKMRTTTVRRLLPESWGFLCPVNTPDGAPCGLMNHLTAICEVVTQF--A 469

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               IP++L SLG+ P+         +   V+LDG +VG++  ++A  +   LR  K++ 
Sbjct: 470 YTTSIPALLCSLGVTPVDGAPHRPYSECYPVLLDGVMVGWVDKELAPGVADSLRRFKVLR 529

Query: 570 EK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI 628
           EK IP  +E+  +    K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM+I
Sbjct: 530 EKRIPPWMEVALIPITGKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNI 588

Query: 629 CITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
            I   E   GITTH+EL     LS +AN IP  D NQSPRNMYQCQM KQTMG P L ++
Sbjct: 589 AILEDEVCAGITTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMSKQTMGFPLLTYQ 648

Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
            +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+
Sbjct: 649 DRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASW 708

Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
           ERGFAHG ++K+ FI L        +E +  G D  +                       
Sbjct: 709 ERGFAHGSVYKTEFINL--------SEKIKQGDDSLV----------------------- 737

Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC 868
                FG  P +  +  KL  DGL ++GAKL   DP Y Y   +        Y  KE   
Sbjct: 738 -----FGVKPGDPRVMQKLDDDGLPFIGAKLQYGDPYYGYLNLNTGESYVMYYKSKENCI 792

Query: 869 VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
           V+ +++ S   E GS    C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+
Sbjct: 793 VDNIKVCS--NESGSGKFKCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE 850

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           SG++PDI+FNPHGFPSRMTIG L
Sbjct: 851 SGMMPDILFNPHGFPSRMTIGML 873



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLE 1026


>gi|221039778|dbj|BAH11652.1| unnamed protein product [Homo sapiens]
          Length = 996

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 352/835 (42%), Positives = 479/835 (57%), Gaps = 99/835 (11%)

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
           M+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN PIA+ R  WK
Sbjct: 1   MVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 60

Query: 231 NRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL------------ 278
            RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L            
Sbjct: 61  TRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSF 120

Query: 279 ------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL 314
                                    M++ + EEG  TQ     + G+ F+ KL     + 
Sbjct: 121 SDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYP 180

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
           NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+ DS++ QE++T G
Sbjct: 181 NE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPG 239

Query: 375 SLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-SIESAMTNFLATGN 418
            L+L  LK++  G               TS  +   ++   F     +        ATGN
Sbjct: 240 QLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGN 299

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
           + +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF
Sbjct: 300 LRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 357

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA 537
           +CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ P+         + 
Sbjct: 358 LCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPIDGAPHRSYSEC 414

Query: 538 LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYL 596
             V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +    K   LYPGL+L
Sbjct: 415 YPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFL 473

Query: 597 FTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
           FT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+EL     LS +AN
Sbjct: 474 FTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIAN 533

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
            IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DM
Sbjct: 534 FIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDM 593

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           DN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E 
Sbjct: 594 DNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEK 645

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
           +  G D S++                           FG  P +  +  KL  DGL ++G
Sbjct: 646 IKQG-DSSLV---------------------------FGIKPGDPRVLQKLDDDGLPFIG 677

Query: 837 AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
           AKL   DP YSY   +        Y  KE   V+ +++ S  T  G     C  I  R+ 
Sbjct: 678 AKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVP 735

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 736 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 790



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 830 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 889

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 890 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 943


>gi|291386321|ref|XP_002709638.1| PREDICTED: RNA polymerase I polypeptide B isoform 2 [Oryctolagus
           cuniculus]
          Length = 1079

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 346/857 (40%), Positives = 485/857 (56%), Gaps = 99/857 (11%)

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           ++W+ +G + G   + +G VPIM+KSK C+L NL+P  LIE  E  +E GGYFI+ G EK
Sbjct: 62  ISWAVNGTSKGVIKQFLGHVPIMVKSKLCNLYNLSPQALIEHHEEAEEMGGYFIINGIEK 121

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           ++R+LI  RRN PIA+ R  W++RG  ++  GV +  V+ + SA N  LH++ NG+    
Sbjct: 122 VIRMLIMPRRNFPIAMVRPKWRSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLN 181

Query: 269 FSHRKSMCLL------------------------------------GMMQSLHEEGIHTQ 292
           F +RK +  L                                     M++ + EEG  TQ
Sbjct: 182 FIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEADSFFRNSVSQMLRIVAEEGCFTQ 241

Query: 293 HDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHV 352
                + G+ F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF +
Sbjct: 242 KQVLNYLGECFRVKLNLPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYLLCLMTRKLFAL 300

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDI 397
            +G    ++ DS++ QE++T G L+L  LK               K+   T+  +   ++
Sbjct: 301 AKGECMEENPDSLVNQEVLTPGQLFLMFLKEKMEAWLTSIKIALDKKAQKTNISINTENL 360

Query: 398 YAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
              F   + +       LATGN+ +   + L  +Q SG  ++A+ +N +RY+SHFR VHR
Sbjct: 361 LKVFSMGADLTRPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHR 418

Query: 457 GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIP 515
           G+ F +MR++  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +     IP
Sbjct: 419 GADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQFVYT---TSIP 475

Query: 516 SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPK 574
            +L SLG+ P+         +   V+LDG +VG++  ++A  +   LR+ K++ EK IP 
Sbjct: 476 PLLCSLGVTPIDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRLFKVLREKRIPP 535

Query: 575 SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKE 634
            +E+  +    K   LYPGLYLFT P R++RPV NL  G  E IGT EQ+F+++ I   E
Sbjct: 536 WMEVALVPMTGKP-SLYPGLYLFTTPCRLVRPVQNLELGKEELIGTMEQLFLNVAIFEDE 594

Query: 635 AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGK 694
              G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   K
Sbjct: 595 VLAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNK 654

Query: 695 LYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAH 754
           LYRLQTP SP  RP  YD  DMDN+P+GTNAIVAV SYTGYDMEDAMI+NK+S+ERGFAH
Sbjct: 655 LYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGFAH 714

Query: 755 GCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF 814
           G ++K+ FI+L        +E +  G D  +                            F
Sbjct: 715 GSVYKTEFIDL--------SEKIKQGDDSLV----------------------------F 738

Query: 815 GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM 874
           G  P +  +  +L  DGL ++G KL   DP Y Y   +        Y  KE   V+ +++
Sbjct: 739 GVKPGDPRILQRLDDDGLPFIGTKLQYGDPYYGYLNLNTGESFVVYYKSKENCIVDNIKV 798

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
            S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPD
Sbjct: 799 CSNDTGSGKF--KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPD 856

Query: 935 IVFNPHGFPSRMTIGFL 951
           I+FNPHGFPSRMTIG L
Sbjct: 857 ILFNPHGFPSRMTIGML 873



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 913  AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 972

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                G +  G    ERD + ++       +R   C       +CVE   + S   E
Sbjct: 973  RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSIAHVCVECGSLLSPLLE 1026



 Score = 44.3 bits (103), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 42  SAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
           S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL  AV+  A I + + G 
Sbjct: 12  SGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVREGLGHAVQ--ADISWAVNGT 69

Query: 102 T 102
           +
Sbjct: 70  S 70


>gi|331233519|ref|XP_003329420.1| DNA-directed RNA polymerase I subunit A2 [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309308410|gb|EFP85001.1| DNA-directed RNA polymerase I subunit A2 [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 1224

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 381/995 (38%), Positives = 539/995 (54%), Gaps = 130/995 (13%)

Query: 34  MILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLD--EG----LDLA 87
           +I  +NT   PS +             QN  +  L APHI SF+ + D  +G    L LA
Sbjct: 29  IIKRENTFRYPSTQG-----------SQNLAIHELIAPHITSFNALFDGPDGSPGLLGLA 77

Query: 88  VEDI-APIEFEIYGKT---------LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQT 137
           + D+ + + F+   +          L+  I +  +S P       G   ++ YPTEAR+ 
Sbjct: 78  IADLPSKVVFDSEKQAGDPRDSRNRLEFKITEVMVSNPLAMEKGQGALRDRTYPTEARER 137

Query: 138 RSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEW 197
              Y+G  +  V WS +        ++ G +PIM+KS++C+L+ ++PA+L+   E  +E 
Sbjct: 138 LVTYAGKISAKVTWSLNNGPPQNEYRDFGLLPIMVKSEKCNLKQMSPAKLVSHHEESEEM 197

Query: 198 GGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVL 257
           GGYF+V G+EK++R LI  RRNH I++ R ++ NRG  ++     IR V+ D+++  N L
Sbjct: 198 GGYFVVNGNEKIIRCLIVPRRNHVISLIRPSFVNRGNFYTTYATQIRCVRPDQTSQTNTL 257

Query: 258 HFVTNGSARFMFSHRKS------MCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL 311
           H+++NG+  F FS RKS      + LL  +    ++ I T      F      ++++  L
Sbjct: 258 HYLSNGTITFRFSWRKSEFMVPVVMLLKALIGASDQEIFTNLAQNAFEDTFRTDRIELML 317

Query: 312 RHLN-----------------------------EVEICDYMLTNCILPHLDDYWDKFLCL 342
           R+                                 +I  Y+L   +L HL D   K+  L
Sbjct: 318 RNFQYYSLPTASACLDFLGSKFKVVLGCPDDWGSEQIGRYLLQRIVLVHLKDPISKYRLL 377

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK---------EKSGTSAVLK 393
             M  KL+ +V G    D+ DS   QEI+  G L   +LK+         +   TS V K
Sbjct: 378 LFMIQKLYALVAGECCADNPDSPQHQEILLPGHLLSSILKERFEEYLGGIQAQITSEVRK 437

Query: 394 E------SDIYAAFRA-----SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
                  SD     +A     S I   +T FLATGN+ +   + L L Q SGF I+AE +
Sbjct: 438 STTGVTFSDNKFVTKAIGKVYSDIGRRVTFFLATGNLVS--PTGLDLQQTSGFTIIAEKL 495

Query: 443 NRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           N  RY+SHFR VHRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNH    C+I
Sbjct: 496 NFYRYISHFRCVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHFAHKCKI 555

Query: 503 SEYIPSKVLAQIPSVLVSLGM-LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPK 561
               PS  +  IPS+L+SLGM  P    I   P + + V LDG I+G+    + + +   
Sbjct: 556 LTSAPS--VKNIPSLLLSLGMSQPFDTTIH--PSKFVSVQLDGEIIGWASSSLCSRMATA 611

Query: 562 LRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGT 620
           LR  K  G E IP  LEI  + R + G   YPGL+LF+ P RM+RPV  L+    + +G+
Sbjct: 612 LRTWKTEGLENIPLELEIGLVPRSKGGQ--YPGLFLFSTPARMMRPVQLLSNKKTDLVGS 669

Query: 621 FEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
           FEQV+MDI  + +E  PG +TH E+S T  LS LANL P  D NQSPRNMYQCQM KQTM
Sbjct: 670 FEQVYMDIACSQEEIDPGFSTHVEISPTHVLSLLANLTPFSDFNQSPRNMYQCQMSKQTM 729

Query: 681 GTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDA 740
           GTP     ++   KLYRLQT  +P  RP  +D   MD+FP GTNA+VAVISYTGYDMEDA
Sbjct: 730 GTPSGVIHHRTDNKLYRLQTGQTPIVRPALHDVYQMDHFPNGTNAVVAVISYTGYDMEDA 789

Query: 741 MILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRL 800
           MILNKS++ERGFAHG ++KSM ++L                +GS   ++  FG+      
Sbjct: 790 MILNKSAHERGFAHGMVYKSMIVDLSP--------------EGSRTSSEKHFGI------ 829

Query: 801 RHMVSDKWQTKDYFGRD-PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
                     K + G +  A   + DKL  DG+  VG+++   DP+ +Y   +  +    
Sbjct: 830 ---------GKSFGGSESSAFNRMCDKLDSDGVALVGSRVRSGDPLCAYVDRTTGKTSFE 880

Query: 860 RYSGKEEMCVEVVRMSSGFTEGGSV-TPNCAYIGY--RIQRNPTVGDKFASRAGQKGICS 916
           +Y G EE  VE VRM      GG V +  C  I +  R+ R+P +GDKF+SR GQKG+CS
Sbjct: 881 KYKGDEEAFVEEVRMI-----GGDVPSKECTKIHFKLRVPRSPVIGDKFSSRHGQKGVCS 935

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            KWP+ D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 936 QKWPSIDMPFSESGIQPDVIINPHAFPSRMTIGMF 970



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 5/57 (8%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            +GYNY+G E MYSG+ G   +A I+ G+V+YQRLRHMV DKWQ +     D   R P
Sbjct: 1010 AGYNYHGNEPMYSGITGKEFEADIYIGLVYYQRLRHMVGDKWQVRTTGKVDKLTRQP 1066


>gi|348507169|ref|XP_003441129.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Oreochromis niloticus]
          Length = 1078

 Score =  624 bits (1608), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 373/962 (38%), Positives = 512/962 (53%), Gaps = 155/962 (16%)

Query: 43  APSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT 102
            PSLKNLTD +FG   D Q+  +  L   HI SF        D AV D            
Sbjct: 13  GPSLKNLTDGSFGHMKDTQHAAIQDLTKAHIESF--------DQAVID------------ 52

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
             LN V  A                                     V+WS +G   G   
Sbjct: 53  -GLNRVVQA------------------------------------DVSWSINGVPKGIIK 75

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           + +G VPIM+KSK C+L  ++P +L+E  E  +E GGYFIV G EK++R+LI  RRN+PI
Sbjct: 76  QSLGHVPIMVKSKLCNLHGMSPKELVEHHEEAEEMGGYFIVNGIEKVIRMLIMPRRNYPI 135

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
           A+ R  WKNRG  ++  G+ +R V+ + +A N  LH++ NG+    F ++K +       
Sbjct: 136 AMSRPKWKNRGQGYTQYGISMRCVREEHTAINMNLHYLENGTVMLNFIYQKELFFLPLGF 195

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ + EE   T+     + G+ F+ K
Sbjct: 196 ALKALVDFTDFQIYQELIKGREDNSFYKTCVSEMLRIVTEENCTTRSKVLNYLGERFRVK 255

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
           +     + NE +  +++L  CI  HL    +KF  L  MT KLF   +     ++ DSI+
Sbjct: 256 MNLPEWYTNE-QCANFLLNECICIHLKSDVEKFYLLCLMTRKLFTFAKQECMEENPDSIV 314

Query: 367 LQEIMTGGSLYLQLLKK-------------EKSG---TSAVLKESDIYAAFRASSIESAM 410
            QE++T G LYL  LK+             +K G   T     E  I      + +  + 
Sbjct: 315 CQEVLTPGQLYLMFLKERLTAWLVSVKLSFDKRGSKVTGGWSSEMMIKMLNMGTDLTRSF 374

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
              LATGN+ +   + L ++Q +G  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+
Sbjct: 375 EYLLATGNLQS--KTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRK 432

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L  ++WGF+CPVHTPDG PCGL+NH+T +C+I     S     +P +L SLG+ P+    
Sbjct: 433 LLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVALTLST--TSLPGLLCSLGVTPVDGTP 490

Query: 531 QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMG 589
                    V+LDG +VG++   +A  +V  LR  K++ EK IP   EIV + +  K   
Sbjct: 491 GRAFADCYPVVLDGAVVGWVEADLAPVVVESLRRFKVLREKKIPPWTEIVLVPKTGKA-S 549

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
           LYPGL+LFT P RM+RPV NLA G  E IGTFEQ+++++ I   E  P +TTH+EL    
Sbjct: 550 LYPGLFLFTTPCRMVRPVQNLAFGKQELIGTFEQLYINVGILENEIEPRVTTHQELFPHS 609

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            LS +AN IP  D NQSPRNMYQCQMGKQTMG P  ++  +   KLYRLQTP SP  RP 
Sbjct: 610 MLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSPLVRPY 669

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
            YD   +DN+P GTNAIVAVISYTGYDMEDAMI+NKSS+ERGFAHG I+K+  ++L    
Sbjct: 670 MYDHYGLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVDLAEKV 729

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
                     G DG +                            FG  P +  +++KL  
Sbjct: 730 K---------GEDGVV----------------------------FGTKPGDPKVKEKLDA 752

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
           DGL ++G+ L   DP YSY   +  +     Y  +E   V+ +++ S   +GGS      
Sbjct: 753 DGLPFIGSVLQYGDPFYSYINLNTGQTFISYYKSQEACIVDNIKVCS--NDGGSGRFKRV 810

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+ PDI+FNPHGFPSRMTIG
Sbjct: 811 CITVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMTPDILFNPHGFPSRMTIG 870

Query: 950 FL 951
            L
Sbjct: 871 ML 872



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 913  GYNYYGTERLYSGLSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGR 972

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C      ++CV+   + S   E
Sbjct: 973  NVQGGIRFGEM--ERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLLE 1025


>gi|299748143|ref|XP_001837493.2| DNA-directed RNA polymerase I polypeptide 2 [Coprinopsis cinerea
           okayama7#130]
 gi|298407835|gb|EAU84409.2| DNA-directed RNA polymerase I polypeptide 2 [Coprinopsis cinerea
           okayama7#130]
          Length = 1203

 Score =  623 bits (1607), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 376/996 (37%), Positives = 549/996 (55%), Gaps = 132/996 (13%)

Query: 44  PSLKNLTDKNFGKPPDKQ-------NEFLLTLGAPHIASFDFMLDEG------------L 84
           P+   L+ +N  K P K        NEF+    APHI SF+ + D+             L
Sbjct: 12  PTFDTLSRENAFKNPPKNGSTYKILNEFV----APHIESFNALFDDSGLPSGDGDGRGLL 67

Query: 85  DLAVEDIAP-IEF-------EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQ 136
            LA++DI   + F       E +G  +++ I +  I+ P V          + +P+EAR+
Sbjct: 68  SLALKDIGERVAFDGRGADPESWGNRMRIWIEQVTIARPMVSDRDRTARERRVFPSEARE 127

Query: 137 TRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDE 196
             + Y G   V + W+          K+ G +PIM++S RC+LR L+ A+L++R E P+E
Sbjct: 128 RLTSYRGRMTVKLCWTDPSGQKHEMPKDCGLIPIMVRSVRCNLRTLSSAELVQRHEEPEE 187

Query: 197 WGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV 256
           +GGYF++ G+E+L+R LI  RRNH I++ R ++ NRG  ++   V IR V+ D+++  N 
Sbjct: 188 FGGYFVINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQIRCVRPDQTSVTNT 247

Query: 257 LHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--------KLQ 308
           LH++ NGSA F F+ RK   ++ +M  L  + +    D ++F G + ++        +++
Sbjct: 248 LHYLANGSAMFRFTWRKQEYVIPIMLIL--KALVNASDKEIFEGVVMQDYDNTFLTDRVE 305

Query: 309 YDLR-------HLNE----------------------VEICDYMLTNCILPHLDDYWDKF 339
             LR       H  E                        I  +++   +L HL+   DKF
Sbjct: 306 LLLRSFKMYTMHTGEQCLEYLGDKFRVVLNLPEDWTNAAIGAWLIQKLVLVHLETPRDKF 365

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--------------- 384
             L +M  K++ ++ G    D+ DS   QE++  GSLY  ++K+                
Sbjct: 366 RMLLYMLRKMYSLISGECCADNPDSPQHQEVLLPGSLYGMIIKERMEEILNAIRATIAMD 425

Query: 385 -KSGTSAVLKESDIYAAFRAS---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
            ++G +    +   +A         I S M+NFLATGN+ +   + L L QASGF I+AE
Sbjct: 426 VRTGANVDFHDKKYFAKVLTKVNFDIGSKMSNFLATGNLVS--PTGLDLQQASGFTIVAE 483

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
            +N  RY+SHFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL+  C
Sbjct: 484 KLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRTC 543

Query: 501 QISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIP-EQALMVMLDGRIVGYILDQIATSL 558
           +I   I S + +A IP++L + GM        SI   + L V LDGR++G+    +A  L
Sbjct: 544 RI---ITSPLTVAHIPNLLAAHGMT--QSFATSIDGRKNLCVQLDGRVIGWARPVVAAQL 598

Query: 559 VPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEW 617
              LR+ K  G+ ++P  LEI ++  PE   G YPGL+LF+   R +RPV  LA G  + 
Sbjct: 599 ATNLRIWKTEGKYEVPLDLEIGFV--PESHGGQYPGLFLFSTKARFMRPVKYLANGKDDQ 656

Query: 618 IGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
           IG+FEQV+M+I  T +E   G++TH E   T+FLS LAN+ P  D NQSPRN+YQCQMGK
Sbjct: 657 IGSFEQVYMNIACTPEEIEEGVSTHVEHDPTNFLSILANMTPFSDFNQSPRNIYQCQMGK 716

Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
           QTMGTP    +++   KLYRLQT  SP  RP  ++T  MD FP GTNA+VAVISYTGYDM
Sbjct: 717 QTMGTPATAIQHRTDNKLYRLQTGQSPIVRPSLHNTYGMDAFPNGTNAVVAVISYTGYDM 776

Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
           EDAMILNKS++ERGF +G I+KS  I+L+             G   S     + FG+   
Sbjct: 777 EDAMILNKSAHERGFTYGTIYKSQIIDLKE----------VRGASKSSSTPTLHFGIAGD 826

Query: 798 QRLRHMVSDKWQTKDYFGRDPANKALE--DKLGPDGLVYVGAKLNERDPMYSYWKESENR 855
            RL                D A+   E  DK   DGL + G ++   DP+ +Y  ++  R
Sbjct: 827 IRLTG--------------DNAHPCAEFVDK---DGLPFPGVRVKPGDPLAAYIDDTTGR 869

Query: 856 YVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGIC 915
               +Y G E   V+ VR+    ++ G       ++  RI R P +GDKF+SR GQKG+C
Sbjct: 870 TRFVKYKGDETAYVDQVRLLG--SDAGDSELQKVHVTLRIPRAPVIGDKFSSRHGQKGVC 927

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           S KWPA D+PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 928 SQKWPAIDMPFSESGIQPDVIINPHAFPSRMTIGML 963



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 37/51 (72%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
            L +GYNYYG E MYSG+ G    A I+FGVV+YQRLRHMV DK+Q +   G
Sbjct: 1001 LAAGYNYYGNEPMYSGITGQEFAADIYFGVVYYQRLRHMVLDKFQGRKRAG 1051


>gi|47209534|emb|CAF89806.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1071

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/912 (39%), Positives = 501/912 (54%), Gaps = 115/912 (12%)

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + +  V+A I +P V  G V     K YP E R  R  Y G     ++WS +G   G   
Sbjct: 6   ISITFVEATILKPMVAKGTVCSQL-KVYPAECRGRRCSYKGKLVADISWSVNGVPRGIIK 64

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           + +G +PIM+KS+ C+LR LTP QL        E GGYFIV G EK++R+LI  RRN+P+
Sbjct: 65  QTLGHLPIMVKSQLCNLRGLTPTQL--------EMGGYFIVNGIEKVIRMLIMQRRNYPV 116

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQ 282
           A+ R  WK+RG  ++  G+ +R VK D +A N  LH++ NG+    F ++K +  L +  
Sbjct: 117 AMSRPKWKSRGQGYTQYGISMRCVKEDHTAVNMTLHYLDNGTVMLNFIYQKELFFLPLGF 176

Query: 283 SL-----------HEEGIHTQHDSKV-------FFGQIFKEKLQYDLRHLNEVEICDYML 324
           +L           ++E I  + D+         F G+ F+ K+     + ++ +    +L
Sbjct: 177 ALKALVDFTDFQIYQELIKGREDNSFYKNQVLSFLGERFRVKMNLPEWYTHQ-QCATILL 235

Query: 325 TNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK- 383
            +CI  HL    +KF  L  MT KLF   +     ++ DSI  QE++T G LYL  LK+ 
Sbjct: 236 EDCICIHLKSDAEKFNLLCLMTRKLFTFAKQECMEENPDSITFQEVLTPGQLYLMFLKER 295

Query: 384 ------------EKSGTSAVLKES--DIYAAFR-ASSIESAMTNFLATGNVSAGKN---- 424
                       EK  T   L  S   +   F  A+ I  +    LATGN+S+       
Sbjct: 296 MAAWLVSVKLACEKKATRLNLSWSADSVMKIFNMATDISKSFEYLLATGNLSSKSGMAAA 355

Query: 425 --------------STLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
                         + L ++Q++G  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+
Sbjct: 356 ARAAPGRRADRCCLAGLGMLQSTGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRK 415

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L  ++WGF+CPVHTPDG PCGL+NH+T NC+I     S V   +P++L SLG+ P+    
Sbjct: 416 LLPESWGFLCPVHTPDGEPCGLMNHMTANCEIVAQTASTV--SLPALLCSLGVTPVDGSP 473

Query: 531 QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMG 589
                    V+LDG +VG++   +A ++V  LR  K++ EK IP   EIV + +  K   
Sbjct: 474 GQAYSDCYPVVLDGAVVGWVESDLAPAVVDALRRFKVLREKKIPPWTEIVLVPKTGKP-S 532

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
           LYP L LFT P RM+RPV NL  G  E IGTFEQ++M++ +   E   G+TTH+EL    
Sbjct: 533 LYPALLLFTTPCRMMRPVQNLTLGKQELIGTFEQLYMNVGVFAAEVQAGVTTHQELFPHS 592

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMG----------KQTMGTPCLNWRYQGVGKLYRLQ 699
            LS +AN IP  D NQSPRNMYQCQMG          KQTMG P   +  +   KLYRLQ
Sbjct: 593 MLSVVANFIPYSDHNQSPRNMYQCQMGECRDGSVDGGKQTMGFPLHTFADRSDNKLYRLQ 652

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           TP SP  RP  YD   +DN+P GTNA+VAVISYTGYDMEDAMI+NK+S+ERGFAHG I+K
Sbjct: 653 TPQSPLVRPSMYDHYSLDNYPSGTNAVVAVISYTGYDMEDAMIVNKASWERGFAHGSIYK 712

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
           +  ++L                                +R+      K      FG  P 
Sbjct: 713 TEVVDLA-------------------------------ERV------KGDDSVVFGTTPG 735

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
           +  +EDKL  DGL ++G+ L   DP YSY   +  +     Y  +E   V+ +++ S  +
Sbjct: 736 DPRVEDKLDADGLPHIGSVLRYGDPFYSYVDLNTGQSSVSYYRSQEACVVDNIKVCSNDS 795

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
             G     C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+ PDI+FNP
Sbjct: 796 GAGRFKHVC--ITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMCPDILFNP 853

Query: 940 HGFPSRMTIGFL 951
           HGFPSRMTIG L
Sbjct: 854 HGFPSRMTIGML 865



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 906  GYNYYGTERLYSGLSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGR 965

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C      ++CV+   + S   E
Sbjct: 966  NVQGGIRFGEM--ERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLLE 1018


>gi|241957019|ref|XP_002421229.1| DNA-directed RNA polymerase I subunit, putative [Candida
           dubliniensis CD36]
 gi|223644573|emb|CAX40561.1| DNA-directed RNA polymerase I subunit, putative [Candida
           dubliniensis CD36]
          Length = 1166

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 369/974 (37%), Positives = 528/974 (54%), Gaps = 121/974 (12%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLD--EG--LDLAVEDIA-------PIEFE 97
           +K F  PP   N +  L    APH+ SF+ ++D  +G  L+LAV+DI        P    
Sbjct: 12  EKRFQNPPKDMNSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGTKTIFDTPETSG 71

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  LK+ +    +++P VPA        K +P+E R+    Y     + V WS +   
Sbjct: 72  RLGNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDGE 131

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +E G++PIMLKS RCHL  L+P QL+E  E  DE GGYFIV G EKL+R+LI  R
Sbjct: 132 EVSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQR 191

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+AI R ++ NRG  ++  G+ IRSV+ D+++  NVLH++ +G+  F FS RK+  L
Sbjct: 192 RNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFL 251

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR----------------- 312
           + ++  L  + +   +D ++F G +          ++L+  LR                 
Sbjct: 252 VPVVMIL--KALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYL 309

Query: 313 ------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                        ++++E+   +L   +L HL +  DKF  L  M  KL+ +V G    D
Sbjct: 310 GDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPNNTDKFRMLLFMIRKLYSLVAGDCAPD 369

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------------- 404
           + D+   QE++ GG LY  ++K++       +K   +SDI      +             
Sbjct: 370 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFSR 429

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 430 INENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFA 487

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C+I+    +  ++Q+P  L  L
Sbjct: 488 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIA--TEASDVSQVPKALTQL 545

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVY 580
           G+LP      +       V LDGRIVG+   +    +   LR  K+ G   +P  LEI Y
Sbjct: 546 GVLPADSF--AAGPNLCCVQLDGRIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGY 603

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGLY+F G  RM+RPV  L     + +G FEQV+M++ +T +E    I 
Sbjct: 604 V--PPSNKGQYPGLYIFGGRSRMMRPVRYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIH 661

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           +H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP     ++   KLYRLQT
Sbjct: 662 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQT 721

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+NKS+ ERGF +G ++K+
Sbjct: 722 GQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKT 781

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L          T + G                                 FG D   
Sbjct: 782 EKVDLSQSRRRGDPITQHFG---------------------------------FGTDEWP 808

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSG 877
           +A ++KL  DGL  +G K+ E DP+ +Y+ ++  +     Y   E   +E V++    S 
Sbjct: 809 EAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPGYIEEVKLLGDDSN 868

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             EG  +T     I YRI R P +GDKF+SR GQKG+CS KWP  D+PFT+SG+ PD++ 
Sbjct: 869 EQEGQQIT-----IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVII 923

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 924 NPHAFPSRMTIGMF 937



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++  I+ G V+YQRLRHMV+DK+Q +
Sbjct: 975  LKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 1021


>gi|354544394|emb|CCE41117.1| hypothetical protein CPAR2_301060 [Candida parapsilosis]
          Length = 1166

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 369/984 (37%), Positives = 529/984 (53%), Gaps = 120/984 (12%)

Query: 41  LSAPSLKNLT-DKNFGKPPDKQNE---FLLTLGAPHIASFDFMLD--EG--LDLAVEDIA 92
           ++    + LT ++ F  PP  ++E    L    APHI SFD + D  +G  L++AV+DI 
Sbjct: 1   MTQAQFRTLTREQRFQNPPKNKSEIYPLLENAVAPHIGSFDALTDGEDGGLLNMAVKDIG 60

Query: 93  PI------EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFN 146
                   E +  G  L + +   +I++P VP         K  P+E R+  + Y     
Sbjct: 61  SKTIFDSKETDRLGNKLNIRVESVSIAKPSVPPTDKLSINRKTMPSECRERMTTYKARLM 120

Query: 147 VTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGH 206
           + V WS +     +  +E G++PIMLKS RCHL+ ++P QL+E  E  DE GGYFIV G 
Sbjct: 121 LNVTWSVNDGEEQSEIREAGQIPIMLKSNRCHLQKMSPNQLVEAKEESDELGGYFIVNGI 180

Query: 207 EKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR 266
           EKL+R+LI  RRNHP+AI R ++ NRG  ++  G+ IRSV+ D+++  NVLH++ +G+  
Sbjct: 181 EKLIRMLIVQRRNHPMAIIRPSFANRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVT 240

Query: 267 FMFSHRKS-------MCLLGMMQSLHEE-----------------------------GIH 290
           F FS +K+       M L  ++++   E                              +H
Sbjct: 241 FRFSWKKNEYLVPVVMILKALVETNDREIFDGIVGHDVENSFLTDRLELLLRTFKSYHLH 300

Query: 291 TQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLF 350
           +Q ++  + G  F+         ++++++   +L   +L HL D  DKF  L  M  KL+
Sbjct: 301 SQQETLAYLGDKFRVVFGA-TPDVSDIDVGKEVLQRIVLVHLPDNKDKFRMLLFMIRKLY 359

Query: 351 HVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS--- 404
            +V G    D+ D+   QE++ GG LY  ++K++        K   +SDI      +   
Sbjct: 360 SLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNFKLQVQSDINRGVGVNFSD 419

Query: 405 -------------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHF 451
                        +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHF
Sbjct: 420 RKYITRVFSRINENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFHRFISHF 477

Query: 452 RAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVL 511
           R VHRGS+F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C I+    +  +
Sbjct: 478 RMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCIIA--TSATDV 535

Query: 512 AQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-E 570
           +Q+P+ L  LG+ P +    +       V LDG+IVG+   +    +   LR  K+ G  
Sbjct: 536 SQVPAALAQLGVSPASAF--AAGPNLCCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGTH 593

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICI 630
            +P  LEI Y+  P    G YPGLYLF G  RM+RPV  L  G  + +G FEQV+M++ +
Sbjct: 594 GLPLDLEIGYV--PPSSKGQYPGLYLFGGHSRMMRPVKYLPLGKEDIVGPFEQVYMNVAV 651

Query: 631 TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ 690
           T +E    + +H E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP     ++
Sbjct: 652 TPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHR 711

Query: 691 GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYER 750
              KLYRLQT  +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+NKSS ER
Sbjct: 712 SDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSSDER 771

Query: 751 GFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQT 810
           GF +G ++K   I+L          T + G                              
Sbjct: 772 GFGYGTVYKVEKIDLSQSRRRGDPITQHFG------------------------------ 801

Query: 811 KDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVE 870
              FG D   +A + KL  DG   +G K+ E DP+ +Y+ ++  +     Y   E   +E
Sbjct: 802 ---FGDDEWPEAWKTKLDDDGFPVIGVKVEEGDPILAYYDDTLGKTKVKTYHSSEPAYIE 858

Query: 871 VVRM---SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
            V++    +G  EG  VT     I YRI R P +GDKF+SR GQKG+CS KWP  D+PFT
Sbjct: 859 EVKLLGDDAGDNEGQQVT-----IKYRITRQPIIGDKFSSRHGQKGVCSRKWPQIDMPFT 913

Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
           +SG+ PD++ NPH FPSRMTIG  
Sbjct: 914 ESGMQPDVIINPHAFPSRMTIGMF 937



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYN++G E MYSG  G  ++  I+ G V+YQRLRHMV+DK+Q +
Sbjct: 975  LKAGYNFHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 1021


>gi|336374043|gb|EGO02381.1| hypothetical protein SERLA73DRAFT_86669 [Serpula lacrymans var.
           lacrymans S7.3]
 gi|336386962|gb|EGO28108.1| hypothetical protein SERLADRAFT_447311 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 1229

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 380/1007 (37%), Positives = 541/1007 (53%), Gaps = 131/1007 (13%)

Query: 37  NQNTLSAPSLKNLTDKNFGKPPDKQ-------NEFLLTLGAPHIASFDFMLDEG------ 83
           ++ T   P+   L  +   + P K        NEF+     PHI SF+ + D+       
Sbjct: 5   SERTKRTPTFNTLAREESFRNPSKTGSTYPILNEFV----TPHIESFNALFDDSGLPKGD 60

Query: 84  ------LDLAVEDIAP-IEFEI------------YGKTLKLNIVKAAISEPKVPAGPVGI 124
                 L L ++DI   + F+             +G  L   I + +I++P+VP      
Sbjct: 61  GDGRGLLSLGLKDIGERVVFDGTGVVGSESGPSGWGNRLSFWIEEVSIAKPQVPERDTLS 120

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSW--DGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
              + YP+EAR+  + Y G     V W    D        ++ G VP+M++S RC+LR+L
Sbjct: 121 TERRVYPSEARERLTSYRGRMQAKVCWKLNNDTHPNQHVMRDCGLVPVMVRSVRCNLRSL 180

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           + A+L++  E P+E+GGYFI+ G+E+L+R LI  RRNH I++ R ++ NRG  ++   V 
Sbjct: 181 SSAELVQHNEEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQ 240

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHE----------EGIHTQ 292
           IR V+ D+S+  N LH+++NGSA   FS RK   ++ +M  L            EG+  Q
Sbjct: 241 IRCVRPDQSSATNSLHYLSNGSATLRFSWRKQEYVIPIMLILKALVGASDKEIFEGVMMQ 300

Query: 293 HDSKVFF--------------------------GQIFKEKLQYDLRHLNEVEICDYMLTN 326
                F                           G  F+  L       N+  +  +++  
Sbjct: 301 DYDNTFLTDRVELLLRSFKMYNLYTGDQCLEYLGDKFRVVLGMPEDWTNQA-LGVWLIQK 359

Query: 327 CILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS 386
            IL HL+   +KF  L  M  KL+ VV      D+ DS   QE++  GSLY  ++K+   
Sbjct: 360 MILVHLETPREKFRMLLFMLRKLYAVVSSSCCSDNPDSPQHQEVLLPGSLYGMIIKERLE 419

Query: 387 GTSAVLKESDIYAAFRAS--------------------SIESAMTNFLATGNVSAGKNST 426
                ++        RA                      I + M+NFLATGN+++   S 
Sbjct: 420 EALNQVRNQIATDVRRAEPPPDFLDKRYITKIINRVNWDIGAKMSNFLATGNLTS--PSG 477

Query: 427 LQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
           L L QASGF I+AE +N  RY+SHFR +HRG++F E++++  R+L  +AWGF+CPVHTPD
Sbjct: 478 LDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 537

Query: 487 GTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML-PLTPVIQSIPEQALMVMLDGR 545
           G+PCGLLNHL+  C+I        +A IP++LV  GM    +  I     + L V LDGR
Sbjct: 538 GSPCGLLNHLSRTCRI--VTSPLAVAHIPALLVGHGMTRAFSSSIDG--RRNLCVQLDGR 593

Query: 546 IVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
           ++G+    +A  L   LR  K  G  K+P  LEI Y+  PE   G YPGL+LF+   RM+
Sbjct: 594 VIGWAKPAVARQLANHLRTWKTEGRHKVPLDLEIGYV--PESKGGQYPGLFLFSSRARMM 651

Query: 605 RPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
           RPV  LA G  + IG FEQV+M+I +  +E   G+++H E + T+FLS LANL P  D N
Sbjct: 652 RPVKYLANGKDDQIGPFEQVYMNIAVKPEEIEEGVSSHVEHAPTNFLSILANLTPFSDFN 711

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRN+YQCQMGKQTMGTP    +++   KLY+LQT  SP  RP  ++T  MD+FP GTN
Sbjct: 712 QSPRNIYQCQMGKQTMGTPSTALKHRTDNKLYKLQTGQSPVVRPRLHNTYAMDSFPNGTN 771

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           AIVAVISYTGYDMEDAMILNKS++ERGF +G ++KS  ++L+             G   S
Sbjct: 772 AIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQIVDLKD----------MRGASKS 821

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
                + FG          + D  +T++   R  A     D+   DGL Y+G KL+  DP
Sbjct: 822 TTAPTLHFG----------LGDDIRTEE-GSRQHACCHFLDR---DGLPYIGTKLDSGDP 867

Query: 845 MYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
           + +Y  ++  R    +Y G E+  V+ VR+  G  + G       +I  RI R+P +GDK
Sbjct: 868 IAAYVDDTTGRTKFVKYKGDEQALVDEVRLLGG--DAGDTELQKLHITLRITRSPVIGDK 925

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F+SR GQKG+CS KWPA D+PFT+SG+ PD++ NPH FPSRMTIG L
Sbjct: 926 FSSRHGQKGVCSQKWPAVDMPFTESGMQPDVIINPHAFPSRMTIGML 972



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 37/54 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
            L +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP
Sbjct: 1010 LAAGYNYYGNEPMYSGITGKEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDP 1063


>gi|213407890|ref|XP_002174716.1| DNA-directed RNA polymerase I subunit RPA2 [Schizosaccharomyces
           japonicus yFS275]
 gi|212002763|gb|EEB08423.1| DNA-directed RNA polymerase I subunit RPA2 [Schizosaccharomyces
           japonicus yFS275]
          Length = 1170

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 372/983 (37%), Positives = 546/983 (55%), Gaps = 129/983 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEGL-DLAVEDIA-PIEFEI-------- 98
           ++ F  PP  ++ F L   A  PH+ SF+ + + GL +LAV+DI     F+         
Sbjct: 9   ERIFKNPPKDKSSFPLLQAATKPHVESFNALTEGGLLNLAVKDIGEKTVFDSVTQNEDGS 68

Query: 99  --YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
             +G  +   + +  I++P + +        K +P+E R+    Y     +  +W  +  
Sbjct: 69  MSFGNRMTFRVDEVQIAKPMLSSRERTSINRKIFPSECRERLCTYKARMVLKFSWRVNDG 128

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
              +  +EVG +PIM++S RCHL  L+PA+LI   E  +E GGYF+V G EK+VR+LI  
Sbjct: 129 PWQSEMREVGNLPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFVVNGIEKIVRMLILP 188

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK--- 273
           +RNHP+A+ R ++ NRG +++  G+ IR V+ D+S+  N LH+++NG A F F  RK   
Sbjct: 189 KRNHPVALIRPSFGNRGTMYTQYGISIRCVRPDQSSLTNTLHYLSNGVAMFRFHWRKNEY 248

Query: 274 ---SMCLLG------------------------------MMQSLHEEGIHTQHDSKVFFG 300
              SM +L                               M+++    G+ TQ  S  + G
Sbjct: 249 LIPSMMILKALIETSDKEIFEGIVGQETENTFLTDRVELMLRAYKSYGLSTQTQSLQYLG 308

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
             F+  L      L +VE+   +L   +L +L D  DKF  L  M  KL+ +V G    D
Sbjct: 309 SKFRVVLGL-AEDLTDVEVGRTLLRRVVLVNLPDNRDKFRMLLFMIRKLYALVAGECCAD 367

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAVLKESDIYAAFRAS 404
           + DS   QEI+ GG L+ Q++K++                + G + +      Y +   S
Sbjct: 368 NPDSPQHQEILLGGFLFAQIIKEKIDDWLTSIRAQIQQDVRRGAAGIDFSDKKYLSRVFS 427

Query: 405 SIESAMTN----FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYF 460
            + S +      FL+TGN+ +  N+ L L QA+G+ ++AE +N  R++SHFR VHRG++F
Sbjct: 428 KVNSDIGTRLQYFLSTGNLVS--NTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFF 485

Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV-LAQIPSVLV 519
            E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL + C+I   + S + ++ IP++L+
Sbjct: 486 AELKTTSVRKLLPEAWGFLCPVHTPDGSPCGLLNHLASKCEI---VTSPIDVSNIPALLL 542

Query: 520 SLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-------- 571
           SLG+ P T V+ + P+  + V LDG+IVG+   ++A  +   LR +K+ G+         
Sbjct: 543 SLGVDPPTAVVAN-PDW-VSVQLDGKIVGWCTHKLAKHVAAVLRQMKVRGDLASDGKTPL 600

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
           +P SLEI  +  P    G +PGL+LF+   RM+RPV  LA G ++ +G FEQV+MDI   
Sbjct: 601 VPLSLEIGLV--PPSHGGQFPGLFLFSEQARMVRPVKYLATGKLDNVGPFEQVYMDIACF 658

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            +E  P ITTH E S T+ LS +AN+ P  D NQSPRNMYQCQMGKQTMGTP    RY+ 
Sbjct: 659 PREIVPKITTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRYRT 718

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             K+YRLQT  +P  RP  +D+  +D++P G NA+VAVISYTGYDMEDAMILNKS++ERG
Sbjct: 719 DNKMYRLQTGQTPIVRPRLHDSYGLDHYPNGMNAVVAVISYTGYDMEDAMILNKSAHERG 778

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           F +G ++KS  I+L        +E    G             VVH               
Sbjct: 779 FGYGTVYKSQKIDL--------SEKRRRGEP-----------VVH--------------- 804

Query: 812 DYFGRDPAN---KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC 868
            +FG  P +   +   +KL  DGL Y+G K+ + +P+ +Y+ ES        Y G E   
Sbjct: 805 -HFGFAPGSTPRREWLEKLDMDGLPYIGTKVEDGEPIAAYYDESTGHNFVQTYHGTEPGF 863

Query: 869 VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
           V+ VR+     + G       +I +R  R+P +GDKF+SR GQKGICS KWP  D+PFT+
Sbjct: 864 VDEVRVLG--NDVGDSECQVLHIKFRNTRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTE 921

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           SG+ PDI+ NPH FPSRMTIG  
Sbjct: 922 SGIQPDIIINPHAFPSRMTIGMF 944



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMVSDK+Q +
Sbjct: 982  VKAGYNYHGNEPMYSGITGKELHADIYIGVVYYQRLRHMVSDKFQVR 1028


>gi|68471155|ref|XP_720354.1| hypothetical protein CaO19.7062 [Candida albicans SC5314]
 gi|77022490|ref|XP_888689.1| hypothetical protein CaO19_7062 [Candida albicans SC5314]
 gi|46442218|gb|EAL01509.1| hypothetical protein CaO19.7062 [Candida albicans SC5314]
 gi|76573502|dbj|BAE44586.1| hypothetical protein [Candida albicans]
          Length = 1166

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 369/974 (37%), Positives = 532/974 (54%), Gaps = 121/974 (12%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLD--EG--LDLAVEDIA-------PIEFE 97
           +K F  PP   + +  L    APH+ SF+ ++D  +G  L+LAV+DI        P    
Sbjct: 12  EKRFQNPPKDMDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSG 71

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  LK+ +    +++P VPA        K +P+E R+    Y     + V WS + + 
Sbjct: 72  RLGNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEE 131

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +E G++PIMLKS RCHL  L+P QL+E  E  DE GGYFIV G EKL+R+LI  R
Sbjct: 132 EVSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQR 191

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+AI R ++ NRG  ++  G+ IRSV+ D+++  NVLH++ +G+  F FS RK+  L
Sbjct: 192 RNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFL 251

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR----------------- 312
           + ++  L  + +   +D ++F G +          ++L+  LR                 
Sbjct: 252 VPVVMIL--KALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYL 309

Query: 313 ------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                        ++++E+   +L   +L HL +  DKF  L  M  KL+ +V G    D
Sbjct: 310 GDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPD 369

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------------- 404
           + D+   QE++ GG LY  ++K++       +K   +SDI      +             
Sbjct: 370 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFSR 429

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 430 INENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFA 487

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C+I+    +  ++Q+P  L  L
Sbjct: 488 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIA--TEASDVSQVPKALTQL 545

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVY 580
           G+LP      +       V LDG+IVG+   +    +   LR  K+ G   +P  LEI Y
Sbjct: 546 GVLPADSF--AAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGY 603

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGLY+F G  RM+RPV  L     + +G FEQV+M++ +T +E    I 
Sbjct: 604 V--PPSNKGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIH 661

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           +H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP     ++   KLYRLQT
Sbjct: 662 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQT 721

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+NKS+ ERGF +G ++K+
Sbjct: 722 GQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKT 781

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L             S   G  +     FG           SD+W            
Sbjct: 782 EKVDLSQ-----------SRRRGDPITQHFGFG-----------SDEWP----------- 808

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSG 877
           +A ++KL  DGL  +G K+ E DP+ +Y+ ++  +     Y   E   +E V++    S 
Sbjct: 809 EAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSN 868

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             EG  +T     I YRI R P +GDKF+SR GQKG+CS KWP  D+PFT+SG+ PD++ 
Sbjct: 869 EQEGQQIT-----IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVII 923

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 924 NPHAFPSRMTIGMF 937



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++  I+ G V+YQRLRHMV+DK+Q +
Sbjct: 975  LKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 1021


>gi|170091560|ref|XP_001877002.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648495|gb|EDR12738.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1179

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 375/995 (37%), Positives = 553/995 (55%), Gaps = 121/995 (12%)

Query: 37  NQNTLSAPSLKNLTDKNFGKPPDKQ-------NEFLLTLGAPHIASFDFMLDEG--LDLA 87
           +Q T   P+   L  +N  + P K+       NEF+    APH+ SF+ + D+   L LA
Sbjct: 5   SQKTRRIPTFNTLVRENAFRNPPKEGSTYSILNEFV----APHLESFNALFDDSGLLSLA 60

Query: 88  VEDIAP-IEFEIYGKT------------LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEA 134
           ++DI   + F+  GK             +++ I +  ++ P VP         K +PTEA
Sbjct: 61  LKDIGERVAFDGDGKVGSESGPDGWGNRIRIWIEQVTVARPMVPEKDRTAKERKVFPTEA 120

Query: 135 RQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHP 194
           R+  + Y G   V + W+          K+ G +PIM++S RC+LR+++ A+L++  E P
Sbjct: 121 RERLTSYRGRMTVKLCWTDISGQRHEMPKDCGLLPIMVRSVRCNLRSMSSAELVKHHEEP 180

Query: 195 DEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATN 254
           +E+GGYF++ G+E+L+R LI  RRNH I++ R ++ NRG  ++   V +R V+ D+++  
Sbjct: 181 EEFGGYFVINGNERLIRYLILPRRNHVISLLRPSFSNRGPSYTQYAVQMRCVRPDQTSVT 240

Query: 255 NVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--------K 306
           N LH+++NGSA   FS RK   ++ +M  L  + +    D ++F G I ++        +
Sbjct: 241 NTLHYLSNGSAMLRFSWRKQEYVIPIMLVL--KALVGASDKEIFEGVIMQDYENTFLTDR 298

Query: 307 LQYDLRH-----LNEVEIC------------------------DYMLTNCILPHLDDYWD 337
           ++  LR      +   E C                         ++L   IL HL+   +
Sbjct: 299 VELLLRSFKMFTMQTGEQCLEYLGDKFRVVLNLPEDWTNAAQGAWLLRKMILVHLETPRE 358

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------- 384
           KF  L  M  KL+ +V G    D+ DS   QE++  GSLY  ++K+              
Sbjct: 359 KFRMLLFMLRKLYSLVSGSCCADNPDSPQHQEVLLPGSLYGMIIKERLEEILNGIRMGIS 418

Query: 385 ---KSGTSAVLKESDIYAAFRAS---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
              ++G +    +   +    +     I S ++NFLATGN+ +   + L L QASGF I+
Sbjct: 419 MDVRNGVAVDFNDKRYFQKVVSKVNFDIGSKLSNFLATGNLVS--PTGLDLQQASGFTIV 476

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           AE +N  RY+SHFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL+ 
Sbjct: 477 AEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSR 536

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
           +C+I+   P  V A IP++L + GM  + TP I     + L V LDGR++G+    +A  
Sbjct: 537 SCRITT-TPLAV-AHIPALLAAHGMTQVFTPTIDG--RKNLSVQLDGRVIGWARPSVAAQ 592

Query: 558 LVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIE 616
           L   LR+ K  G+ ++P  LEI  +  P    G YPGL+LF+   RM+RPV  L  G  +
Sbjct: 593 LATNLRIWKTEGKHEVPLDLEIGLV--PVSNGGQYPGLFLFSTTARMMRPVKYLGNGRDD 650

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
            +G FEQV+M+I    +E    ++TH E   T+FLS LANL P  D NQSPRN+YQCQMG
Sbjct: 651 QVGPFEQVYMNIACIPEEIEEAVSTHVEHEPTNFLSILANLTPFSDFNQSPRNIYQCQMG 710

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ+MGTP    +++   KLYRLQT  SP  RP  ++T  MD+FP GTNAIVAVISYTGYD
Sbjct: 711 KQSMGTPATALQHRTDNKLYRLQTGQSPVVRPALHNTYAMDSFPNGTNAIVAVISYTGYD 770

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           MEDAMILNKS++ERGF +G ++KS  I+L+             G         + FG   
Sbjct: 771 MEDAMILNKSAHERGFGYGTVYKSQIIDLKE----------MRGASKLNSVPTLHFG--- 817

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY 856
                 + +D   T D         A  + L  DGL ++GA+L+  DP+ +Y  ++  R 
Sbjct: 818 ------LGNDIRTTGDKL------HACLEFLDLDGLPFIGARLSSGDPIAAYVDDTTGRT 865

Query: 857 VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
              RY G E   ++ VR+  GF + G       +I  RI R+P +GDKF+SR GQKG+CS
Sbjct: 866 KFVRYKGDELGYIDEVRL-LGF-DAGDTELQKIHITLRITRSPVIGDKFSSRHGQKGVCS 923

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            KWPA D+PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 924 QKWPAVDMPFSESGMQPDVIINPHAFPSRMTIGML 958



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            L +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 996  LAAGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDPVTR 1052


>gi|238883229|gb|EEQ46867.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida albicans
           WO-1]
          Length = 1166

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 369/974 (37%), Positives = 531/974 (54%), Gaps = 121/974 (12%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLD--EG--LDLAVEDIA-------PIEFE 97
           +K F  PP   + +  L    APH+ SF+ ++D  +G  L+LAV+DI        P    
Sbjct: 12  EKRFQNPPKDMDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSG 71

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  LK+ +    +++P VPA        K +P+E R+    Y     + V WS +   
Sbjct: 72  RLGNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDGE 131

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +E G++PIMLKS RCHL  L+P QL+E  E  DE GGYFIV G EKL+R+LI  R
Sbjct: 132 EVSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQR 191

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+AI R ++ NRG  ++  G+ IRSV+ D+++  NVLH++ +G+  F FS RK+  L
Sbjct: 192 RNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFL 251

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR----------------- 312
           + ++  L  + +   +D ++F G +          ++L+  LR                 
Sbjct: 252 VPVVMIL--KALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYL 309

Query: 313 ------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                        ++++E+   +L   +L HL +  DKF  L  M  KL+ +V G    D
Sbjct: 310 GDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPD 369

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------------- 404
           + D+   QE++ GG LY  ++K++       +K   +SDI      +             
Sbjct: 370 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFSR 429

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 430 INENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFA 487

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C+I+    +  ++Q+P  L  L
Sbjct: 488 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIA--TEASDVSQVPKALTQL 545

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVY 580
           G+LP      +       V LDG+IVG+   +    +   LR  K+ G   +P  LEI Y
Sbjct: 546 GVLPADSF--AAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGY 603

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGLY+F G  RM+RPV  L     + +G FEQV+M++ +T +E    I 
Sbjct: 604 V--PPSNKGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIH 661

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           +H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP     ++   KLYRLQT
Sbjct: 662 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQT 721

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+NKS+ ERGF +G ++K+
Sbjct: 722 GQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKT 781

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L             S   G  +     FG           SD+W            
Sbjct: 782 EKVDLSQ-----------SRRRGDPITQHFGFG-----------SDEWP----------- 808

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSG 877
           +A ++KL  DGL  +G K+ E DP+ +Y+ ++  +     Y   E   +E V++    S 
Sbjct: 809 EAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSN 868

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             EG  +T     I YRI R P +GDKF+SR GQKG+CS KWP  D+PFT+SG+ PD++ 
Sbjct: 869 EQEGQQIT-----IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVII 923

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 924 NPHAFPSRMTIGMF 937



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++  I+ G V+YQRLRHMV+DK+Q +
Sbjct: 975  LKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 1021


>gi|393908209|gb|EJD74955.1| DNA-directed RNA polymerase [Loa loa]
          Length = 1128

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 354/948 (37%), Positives = 515/948 (54%), Gaps = 108/948 (11%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEPKVPAGP-VGIH 125
           + + H+ SFD++ ++G+ LA  D+   +F +  G+ ++L    A +  P +       + 
Sbjct: 5   IASYHVESFDYLAEQGVHLAALDVPAEKFRLPTGEAVELRYTGAQLGYPMIEMKQGSAVD 64

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
             K +P+E RQ    Y GP  V +    +G         VG VPIMLKS RCHLR LT  
Sbjct: 65  SLKLFPSECRQRGLTYRGPLKVNIEICLNGAKMDFCEVIVGEVPIMLKSNRCHLRWLTRE 124

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           QLI  GE   E GGYFI  G+EK++RLL+ NRRN+PI + R++++ +G LF+  GV IR 
Sbjct: 125 QLIAHGEEGTEKGGYFICKGNEKVIRLLVANRRNYPIGLVRHSFREKGSLFTQYGVMIRC 184

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKSM------------------------------ 275
           V+ + SA    LH++ +G+      +R+ +                              
Sbjct: 185 VRGNYSAAMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRPG 244

Query: 276 ------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVE-ICDYMLTNCI 328
                 C+  M+    ++GI  Q  +    G+ F+   Q  +      E +  ++L  C+
Sbjct: 245 DHFWKGCVTTMLALCSDDGIVNQKAALTAIGERFRVATQDRVGPWEVSEDVGRFLLRVCV 304

Query: 329 LPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK----- 383
             HLD+  DKF  LS+M  KL  + +G    +S D+   QE    G + L ++++     
Sbjct: 305 AIHLDNDEDKFFLLSYMAQKLIALTKGECAAESPDNPQFQEAAVSGHILLLIIRERLENT 364

Query: 384 ------------EKSGTSAVLKESDIYAAF---RASSIESAMTNFLATGNVSAGKNSTLQ 428
                       ++   S +L   ++  A    R+  I   +  FLATGN+ +    TLQ
Sbjct: 365 LNIARRKIELEAKRKAESFLLSSHELIRAMGTQRSGEITRGLEYFLATGNLISRGGLTLQ 424

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
             Q +GF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG 
Sbjct: 425 --QNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA 482

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNH+  + +I  +  +   +++P +L  LGM+  + +     E    V++DG+ VG
Sbjct: 483 PCGLLNHVAASVRIVTHYSNT--SELPKLLGELGMVGHSAITLLPAEPMYPVLVDGKFVG 540

Query: 549 YILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKR---PEKGMGLYPGLYLFTGPGRML 604
           +I    A+ +  +LR+LK+  + ++P   EI+ +++   P   +  YPGLY+FT PG ++
Sbjct: 541 HISQSQASYVEQQLRVLKVSDDIRVPSCAEIILVEKSIDPINILVQYPGLYIFTEPGHLM 600

Query: 605 RPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
           RPV  L +  +E+IGTFEQV++ ICI  +EA P +T H+E+  +   S  ANLIP PD N
Sbjct: 601 RPVKYLPSDRVEFIGTFEQVYLSICIDPEEAEPNVTMHQEIHPSCLFSFAANLIPFPDHN 660

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRN+YQCQMGKQTMGTP   W Y+   K+YRLQ P +P  +P  Y+   +D +P+GTN
Sbjct: 661 QSPRNVYQCQMGKQTMGTPVHAWNYRADNKMYRLQFPQNPIVKPEPYEKYGIDEYPLGTN 720

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           A VAVISYTGYDMEDAM++NKSSYERGFAHG + K   + L                +G 
Sbjct: 721 ACVAVISYTGYDMEDAMVINKSSYERGFAHGSVIKVERVNL---------------TEGR 765

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
             +  IF                         DP N   +  +  DGL   G    E DP
Sbjct: 766 SAECPIFLC-----------------------DPENP--QKTIDLDGLPIPGRLYMEGDP 800

Query: 845 MYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC-AYIGYRIQRNPTVGD 903
            YS +    N Y   +Y   E      VR+       G+    C A I +R +RNP +GD
Sbjct: 801 YYSVYDIDTNSYKIHKYKYAEAAFCGSVRIVEEGENVGANKGKCHALIQWRTRRNPIIGD 860

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KFASR GQKGI S  WP E +PF++SG+VPDI+FNPHGFPSRMTIG +
Sbjct: 861 KFASRHGQKGINSFLWPTESMPFSESGMVPDIIFNPHGFPSRMTIGMM 908



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            + +GYNYYG ETMYSGVDG  M+ QIFFG+V+YQRLRHM++DK+Q +     DP      
Sbjct: 946  VRAGYNYYGNETMYSGVDGREMEVQIFFGIVYYQRLRHMIADKFQVRSTGPTDPVTLQPV 1005

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSS 876
                  G +  G    ERD M ++      ++R   C       +C     M S
Sbjct: 1006 KGRKKGGGIRFGEM--ERDAMIAHGAAFTLQDRLFNCSDRDIAHICARCGSMIS 1057


>gi|255731632|ref|XP_002550740.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida
           tropicalis MYA-3404]
 gi|240131749|gb|EER31308.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida
           tropicalis MYA-3404]
          Length = 1166

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 373/975 (38%), Positives = 525/975 (53%), Gaps = 121/975 (12%)

Query: 50  TDKNFGKPP--DKQNEFLLTLGAPHIASFDFMLD--EG--LDLAVEDIA-------PIEF 96
           TDK F  PP  D     L    APH+ SF+ ++D  EG  L+LAV+DI        P   
Sbjct: 11  TDKRFKNPPKDDSSYPLLKDAVAPHVGSFNALMDGPEGGLLNLAVKDIGSKTIFDTPETS 70

Query: 97  EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              G  LK+ +    +++P VPA        K +P+E R+    Y     + V WS +  
Sbjct: 71  TRLGNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDG 130

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
              +  +E G++PIMLKS RCHL  LTP QL+E  E  DE GGYFIV G EKL+R+LI  
Sbjct: 131 EEVSEVREAGQIPIMLKSNRCHLEKLTPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQ 190

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
           RRNHP+A+ R ++ NRG  ++  G+ IR V+ D+++  NVLH++ +G+  F FS RK+  
Sbjct: 191 RRNHPMALIRPSFGNRGASYTKYGIQIRCVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEY 250

Query: 277 LLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR---------------- 312
           L+ +   L  + +   +D ++F G +          ++L+  LR                
Sbjct: 251 LVPVTMIL--KALVETNDREIFDGIVGNDTGNSFLTDRLELLLRTYKKYNLNSQQETLAY 308

Query: 313 -------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
                         ++++++   +L   +L HL D  DKF  L  M  KL+ +V G    
Sbjct: 309 LGDKFRVVFGATPDMSDIDVGKEVLKRIVLVHLPDNTDKFRMLLFMIRKLYSLVAGDCAP 368

Query: 360 DSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------------ 404
           D+ D+   QE++ GG LY  ++K++       +K   +SDI      +            
Sbjct: 369 DNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFS 428

Query: 405 ----SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYF 460
               +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F
Sbjct: 429 RINENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFF 486

Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVS 520
            E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+  + S V +Q+P  L  
Sbjct: 487 AELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIAT-VASDV-SQVPKALTQ 544

Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIV 579
           LG+LP      +       V LDG+IVG+   +    +   LR  K+ G   +P  LEI 
Sbjct: 545 LGVLPADSF--AAGPDLCCVQLDGKIVGWTTHKQGKIVADTLRFWKVEGSHGLPLDLEIG 602

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
           Y+  P    G YPGLYLF G  RM+RPV  L     + +G FEQV+M++ +T +E    +
Sbjct: 603 YV--PPSNKGQYPGLYLFGGHSRMMRPVKYLPLDKQDILGPFEQVYMNVAVTPEEIENNV 660

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            +H E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP     ++   KLYRLQ
Sbjct: 661 HSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQ 720

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           T  +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+NKS+ ERGF +G ++K
Sbjct: 721 TGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYK 780

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
           +  I+L          T + G                                 FG D  
Sbjct: 781 TEKIDLSQSRRRGDPITQHFG---------------------------------FGTDEW 807

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
            +A ++KL  DGL  +G K+   DP+ +Y+ ++  +     Y   E   +E V++    T
Sbjct: 808 PEAWKEKLDADGLPMIGVKVEAGDPIVAYYDDTLGKTKVKTYHSSEPGYIEEVKLLGDET 867

Query: 880 ---EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              EG  +T     I YRI R P +GDKF+SR GQKG+CS KWP  D+PFT+SG+ PD++
Sbjct: 868 SDQEGQQLT-----IKYRITRAPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVI 922

Query: 937 FNPHGFPSRMTIGFL 951
            NPH FPSRMTIG  
Sbjct: 923 INPHAFPSRMTIGMF 937



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++  I+ G V+YQRLRHMV+DK+Q +
Sbjct: 975  LKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 1021


>gi|384492834|gb|EIE83325.1| hypothetical protein RO3G_08030 [Rhizopus delemar RA 99-880]
          Length = 1150

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 371/986 (37%), Positives = 526/986 (53%), Gaps = 133/986 (13%)

Query: 46  LKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEG------LDLAVEDIAPIEF--- 96
            +N +++ FG P       L  + APHI +F+ + + G      LD AV+DI  +     
Sbjct: 13  FRNPSNEKFGTPS------LQEVVAPHIEAFNSISEFGEGRPGLLDFAVQDIGSVSVFDN 66

Query: 97  -----------EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPF 145
                         G  L   +    + +P V          + YPTE R+    Y G  
Sbjct: 67  ADSSINVDPNGNSLGNKLTYWLEDVKLFQPMVSERDTTTLKRRTYPTECRERLCTYRGRL 126

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + W  +     +  +++G VPIM++S RC+L+++ P  LI   E  +E GGYFIV G
Sbjct: 127 QGKLCWRVNNGPVQSDIRDLGLVPIMIRSNRCNLKDMYPKDLIAHNEESEEMGGYFIVNG 186

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
            EKL+RLLI  RRNH  AI RN+++NRG  +S  G  IR  +RD++   N +H++T+G+ 
Sbjct: 187 IEKLIRLLIVPRRNHVTAIVRNSFQNRGPTYSTFGCAIRCARRDQTTLTNTIHYLTDGNV 246

Query: 266 RFMFSHRKSMCLLGMM------------------------------------QSLHEEGI 289
            F F+ RK   LL  M                                    +S     +
Sbjct: 247 MFRFAWRKQEYLLPAMLVFKSLIDCSDKEIFDALCQGDTSNTFLTDRIELLLRSFKIYNL 306

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKL 349
            T+     + G+ F+  +  D   L   EI + ++   I  HLD   DKF  L+ M  KL
Sbjct: 307 FTRDQCLNYIGEKFRVTMGLD-EDLTNKEIGEALVKKLIFVHLDSNRDKFNLLAFMIRKL 365

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK------------ESDI 397
           + +V G    D+ D+   QE++ GG LY  ++K++       +K            + D 
Sbjct: 366 YALVSGECVADNPDAPQHQEVLLGGHLYTMIIKEKIYDWLQAVKMQVRTDLRINPAKVDF 425

Query: 398 YA------AFRA--SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
           +       A+R   S I S ++ FLATGN+ +   + L L Q SGF I+AE +N  RY++
Sbjct: 426 FNNTYFQNAYRKVNSDIGSKLSYFLATGNLVS--KTGLDLQQFSGFTIVAEKLNFFRYLA 483

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPS 508
           HFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL   C+ I+E +  
Sbjct: 484 HFRCIHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDGSPCGLLNHLAHKCKVINEPLDI 543

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQA-LMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
           K    IP +L SLG+      + +I      +VMLDG+IVG+   + A  +   L++ ++
Sbjct: 544 KT---IPRLLASLGIS--QSFLHTIGRPGDNVVMLDGKIVGWCTPKTAEKVAQSLKVWRV 598

Query: 568 VGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
            GEK IP  LEI ++  P    G YPGLYLF+ P RM+RPV  L  G  + IGTFEQV+M
Sbjct: 599 NGEKGIPLDLEIAHV--PNTYGGEYPGLYLFSSPARMMRPVKYLGNGKTDMIGTFEQVYM 656

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
           DI     E  PG+TTH+E + T+ LS +AN  P  D NQSPRNMYQCQMGKQTMGTP   
Sbjct: 657 DIACMDDEVVPGVTTHQEFTPTNILSIIANQTPFSDFNQSPRNMYQCQMGKQTMGTPSTV 716

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
           + ++   K+YR+Q+  +P  R   Y+   +D +P G NAIVAVISYTGYDMEDAMILNKS
Sbjct: 717 FNHRTDNKMYRIQSSQTPVVRTELYNEYGLDGWPQGNNAIVAVISYTGYDMEDAMILNKS 776

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           ++ERGF +G ++KS  ++L   Y   G    Y                            
Sbjct: 777 AHERGFGYGTVYKSEVVDLNQ-YRSRGEAITYR--------------------------- 808

Query: 807 KWQTKDYFGRDP-ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                  FG DP   K  ++KLGPDGL ++GA L   DP+  Y  ES  + V  +Y G E
Sbjct: 809 -------FGLDPIKGKKYKNKLGPDGLPHIGAHLVADDPLCCYIDESTGKDVIKKYKGPE 861

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
           +  V+ VR+    +  G +     +I  RI R+P +GDKF+SR GQKG+CS K+PA D+P
Sbjct: 862 DAYVDEVRVLGDDSGNGELQK--VHIKLRITRSPVIGDKFSSRHGQKGVCSQKYPAIDMP 919

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           FT+SG+ PD++ NPH FPSRMTIG  
Sbjct: 920 FTESGMQPDVIINPHAFPSRMTIGMF 945



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG+ G  M+  I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 984  KAGYNYHGNEAMYSGITGEEMKMDIYIGVVYYQRLRHMVNDKFQVR 1029


>gi|312074086|ref|XP_003139812.1| DNA-directed RNA polymerase [Loa loa]
          Length = 916

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 354/948 (37%), Positives = 514/948 (54%), Gaps = 108/948 (11%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEPKVPAGP-VGIH 125
           + + H+ SFD++ ++G+ LA  D+   +F +  G+ ++L    A +  P +       + 
Sbjct: 5   IASYHVESFDYLAEQGVHLAALDVPAEKFRLPTGEAVELRYTGAQLGYPMIEMKQGSAVD 64

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
             K +P+E RQ    Y GP  V +    +G         VG VPIMLKS RCHLR LT  
Sbjct: 65  SLKLFPSECRQRGLTYRGPLKVNIEICLNGAKMDFCEVIVGEVPIMLKSNRCHLRWLTRE 124

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           QLI  GE   E GGYFI  G+EK++RLL+ NRRN+PI + R++++ +G LF+  GV IR 
Sbjct: 125 QLIAHGEEGTEKGGYFICKGNEKVIRLLVANRRNYPIGLVRHSFREKGSLFTQYGVMIRC 184

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKSM------------------------------ 275
           V+ + SA    LH++ +G+      +R+ +                              
Sbjct: 185 VRGNYSAAMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRPG 244

Query: 276 ------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVE-ICDYMLTNCI 328
                 C+  M+    ++GI  Q  +    G+ F+   Q  +      E +  ++L  C+
Sbjct: 245 DHFWKGCVTTMLALCSDDGIVNQKAALTAIGERFRVATQDRVGPWEVSEDVGRFLLRVCV 304

Query: 329 LPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK----- 383
             HLD+  DKF  LS+M  KL  + +G    +S D+   QE    G + L ++++     
Sbjct: 305 AIHLDNDEDKFFLLSYMAQKLIALTKGECAAESPDNPQFQEAAVSGHILLLIIRERLENT 364

Query: 384 ------------EKSGTSAVLKESDIYAAF---RASSIESAMTNFLATGNVSAGKNSTLQ 428
                       ++   S +L   ++  A    R+  I   +  FLATGN+ +    TLQ
Sbjct: 365 LNIARRKIELEAKRKAESFLLSSHELIRAMGTQRSGEITRGLEYFLATGNLISRGGLTLQ 424

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
             Q +GF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG 
Sbjct: 425 --QNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA 482

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNH+  + +I  +  +   +++P +L  LGM+  + +     E    V++DG+ VG
Sbjct: 483 PCGLLNHVAASVRIVTHYSNT--SELPKLLGELGMVGHSAITLLPAEPMYPVLVDGKFVG 540

Query: 549 YILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKR---PEKGMGLYPGLYLFTGPGRML 604
           +I    A+ +  +LR+LK+  + ++P   EI+ +++   P   +  YPGLY+FT PG ++
Sbjct: 541 HISQSQASYVEQQLRVLKVSDDIRVPSCAEIILVEKSIDPINILVQYPGLYIFTEPGHLM 600

Query: 605 RPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
           RPV  L +  +E+IGTFEQV++ ICI  +EA P +T H+E+  +   S  ANLIP PD N
Sbjct: 601 RPVKYLPSDRVEFIGTFEQVYLSICIDPEEAEPNVTMHQEIHPSCLFSFAANLIPFPDHN 660

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRN+YQCQMGKQTMGTP   W Y+   K+YRLQ P +P  +P  Y+   +D +P+GTN
Sbjct: 661 QSPRNVYQCQMGKQTMGTPVHAWNYRADNKMYRLQFPQNPIVKPEPYEKYGIDEYPLGTN 720

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           A VAVISYTGYDMEDAM++NKSSYERGFAHG + K   + L                +G 
Sbjct: 721 ACVAVISYTGYDMEDAMVINKSSYERGFAHGSVIKVERVNL---------------TEGR 765

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
             +  IF                         DP N   +  +  DGL   G    E DP
Sbjct: 766 SAECPIFLC-----------------------DPENP--QKTIDLDGLPIPGRLYMEGDP 800

Query: 845 MYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC-AYIGYRIQRNPTVGD 903
            YS +    N Y   +Y   E      VR+       G+    C A I +R +RNP +GD
Sbjct: 801 YYSVYDIDTNSYKIHKYKYAEAAFCGSVRIVEEGENVGANKGKCHALIQWRTRRNPIIGD 860

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KFASR GQKGI S  WP E +PF++SG+VPDI+FNPHGFPSRMTIG  
Sbjct: 861 KFASRHGQKGINSFLWPTESMPFSESGMVPDIIFNPHGFPSRMTIGMF 908


>gi|384499993|gb|EIE90484.1| hypothetical protein RO3G_15195 [Rhizopus delemar RA 99-880]
          Length = 1150

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 371/985 (37%), Positives = 524/985 (53%), Gaps = 131/985 (13%)

Query: 46  LKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEG------LDLAVEDIAPIEF--- 96
            +N +++ FG P       L  + APHI +F+ + + G      LD AV DI  +     
Sbjct: 13  FRNPSNERFGTPS------LQEVVAPHIEAFNSISEFGEGQPGLLDYAVRDIGSVSVFDN 66

Query: 97  -----------EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPF 145
                         G  L   +    + +P V          + YPTE R+    Y G  
Sbjct: 67  ADSSINVDPNGSSLGNKLTYWLEDVKLFQPMVSERDTTTLKRRTYPTECRERLCTYRGRL 126

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + W  +     +  +++G VPIM++S RC+L+++ P  LI   E  +E GGYFIV G
Sbjct: 127 QGKLCWRVNNGPVQSDIRDLGLVPIMIRSNRCNLKDMYPKDLIAHNEESEEMGGYFIVNG 186

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
            EKL+RLLI  RRNH  AI RN+++NRG  +S  G  IR  +RD++   N +H++T+G+ 
Sbjct: 187 IEKLIRLLIVPRRNHVTAIIRNSFQNRGPTYSTFGCAIRCARRDQTTLTNTIHYLTDGNV 246

Query: 266 RFMFSHRKSMCLLGMM------------------------------------QSLHEEGI 289
            F F+ RK   LL  M                                    +S     +
Sbjct: 247 MFRFAWRKQEYLLPAMLVFKSLIDCSDKEIFDALCQGDTSNTFLTDRIELLLRSFKIYNL 306

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKL 349
            T+     + G+ F+  +  D   L   EI + ++   I  HLD   DKF  L+ M  KL
Sbjct: 307 FTRDQCLNYIGEKFRVTMGLD-EDLTNKEIGEALVKKLIFVHLDSNRDKFNLLAFMIRKL 365

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK------------ESDI 397
           + +V G    D+ D+   QE++ GG LY  ++K++       +K            + D 
Sbjct: 366 YALVSGECVADNPDAPQHQEVLLGGHLYTMIIKEKIYDWLQAVKMQVRTDLRINPAKVDF 425

Query: 398 YA------AFRA--SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
           +       A+R   S I S ++ FLATGN+ +   + L L Q SGF I+AE +N  RY++
Sbjct: 426 FNNTYFQNAYRKVNSDIGSKLSYFLATGNLVS--KTGLDLQQFSGFTIVAEKLNFFRYLA 483

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           HFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL   C++    P  
Sbjct: 484 HFRCIHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDGSPCGLLNHLAHKCKVINE-PLD 542

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQA-LMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
           V A IP +L SLG+      + +I      +VMLDG+IVG+   + A  +   L++ ++ 
Sbjct: 543 VKA-IPRLLASLGIS--QSFLHTIGRPGDNVVMLDGKIVGWCTPKTAEKVAQSLKVWRVN 599

Query: 569 GEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMD 627
           GEK IP  LEI ++  P    G YPGLYLF+ P RM+RPV  L  G  + IGTFEQV+MD
Sbjct: 600 GEKGIPLDLEIAHV--PNTYGGEYPGLYLFSSPARMMRPVKYLGNGKTDMIGTFEQVYMD 657

Query: 628 ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           I     E  PG+TTH+E + T+ LS +AN  P  D NQSPRNMYQCQMGKQTMGTP   +
Sbjct: 658 IACMDDEVVPGVTTHQEFTPTNILSIIANQTPFSDFNQSPRNMYQCQMGKQTMGTPSTVF 717

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
            ++   K+YR+Q+  +P  R   Y+   +D +P G NAIVAVISYTGYDMEDAMILNKS+
Sbjct: 718 NHRTDNKMYRIQSSQTPVVRTELYNEYGLDGWPQGNNAIVAVISYTGYDMEDAMILNKSA 777

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
           +ERGF +G ++KS  ++L   Y   G    Y                             
Sbjct: 778 HERGFGYGTVYKSEVVDLNQ-YRSRGEAITYR---------------------------- 808

Query: 808 WQTKDYFGRDP-ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEE 866
                 FG DP   K  ++KLGPDGL ++GA L   DP+  Y  ES  + V  +Y G E+
Sbjct: 809 ------FGLDPIKGKKYKNKLGPDGLPHIGAHLVADDPLCCYIDESTGKDVIKKYKGPED 862

Query: 867 MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             V+ VR+    +  G +     +I  RI R+P +GDKF+SR GQKG+CS K+PA D+PF
Sbjct: 863 AYVDEVRVLGDDSGNGELQK--VHIKLRITRSPVIGDKFSSRHGQKGVCSQKYPAIDMPF 920

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           T+SG+ PD++ NPH FPSRMTIG  
Sbjct: 921 TESGMQPDVIINPHAFPSRMTIGMF 945



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG+ G  M+  I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 984  KAGYNYHGNEAMYSGITGEEMKMDIYIGVVYYQRLRHMVNDKFQVR 1029


>gi|393235983|gb|EJD43534.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Auricularia delicata TFB-10046 SS5]
          Length = 1221

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 360/915 (39%), Positives = 514/915 (56%), Gaps = 100/915 (10%)

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFN---KYYPTEARQTRSVYSGPFNVTVAWSWDG 155
           +G  L + I   +I +P V     GI      + YP EAR+  + Y G     + WS++G
Sbjct: 88  WGNKLTVKIEAVSIGKPMVSERAKGIELTGNTRVYPAEARERLTSYRGRMTAKLTWSFNG 147

Query: 156 KAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLIN 215
                 T++ G VP+M++S RCHLRN + A+L+   E  +E+GGYFI+ G+E++VR LI 
Sbjct: 148 GPEHVVTRDCGLVPVMVRSVRCHLRNASSAELVRHHEEAEEFGGYFIINGNERIVRYLIL 207

Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR-DESATNNVLHFVTNGSARFMFSHRKS 274
            RRNH I++ R ++ NRG  +++  V IR V++ D+S+  N LH+++NGSA   FS RK+
Sbjct: 208 PRRNHVISLIRPSFTNRGASYTEYAVQIRCVRKGDQSSVTNTLHYLSNGSAMLRFSWRKN 267

Query: 275 ------MCLLG------------------------------MMQSLHEEGIHTQHDSKVF 298
                 M LL                               +++S     ++T+     +
Sbjct: 268 EYVVPIMLLLKAAVGASDREIFEGVIMKDYDNTYLTDRVELLLRSFKTYSLYTKEQCLDY 327

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQ 358
            G+ F+  L       NE E+  ++L   +L HLDD  +K   L +M  KL+ +V G   
Sbjct: 328 LGKKFRVVLGLREDISNE-EVGAWLLNKVLLVHLDDLREKSRMLIYMLRKLYSLVSGDCA 386

Query: 359 LDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAVLKESDIYAAFR 402
           +D+ DS   QEI+  GSLY  ++K+                 ++G   V  +   Y    
Sbjct: 387 IDNPDSPQHQEILLPGSLYGMIVKERLEEALNAIRALVMMDVRNGAPTVDFQDGRYLGKI 446

Query: 403 ASSIE----SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
              +     + ++NF+ATGN+ +   S L L QASGF I+AE +N  RY+SHFR VHRG+
Sbjct: 447 LQKVNFDVGARLSNFMATGNLVS--PSGLDLQQASGFTIVAEKLNWHRYISHFRCVHRGA 504

Query: 459 YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVL 518
           +F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHLT +C+I        ++ +PS+L
Sbjct: 505 FFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLTRSCRI--ICEPLSVSHLPSLL 562

Query: 519 VSLGMLPLTPVIQSIPEQA-LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSL 576
            S G+    P   SI  +A L V LDGRI+G+    +A  L   LR+ K  G+  +P  L
Sbjct: 563 YSRGLT--QPFASSIDGRANLCVQLDGRIIGWARPTLAKQLADDLRVWKTEGQHGVPLDL 620

Query: 577 EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY 636
           EI ++   +   G YPGL+LF+G  RM+RPV  LA G  + IG+FEQV+MDI +  +E  
Sbjct: 621 EIGWVPPSDGAGGQYPGLFLFSGRSRMMRPVKFLANGKTDMIGSFEQVYMDIAVKEEEIE 680

Query: 637 PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
            GI TH E S ++F+S LAN+ P  D NQSPRN+YQCQMGKQ+MGTP    R++   KLY
Sbjct: 681 KGIETHVEFSTSNFMSILANMTPFSDFNQSPRNIYQCQMGKQSMGTPATALRHRTDNKLY 740

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
           RLQT  +P  RP  ++T  MD+FP G NA+VAVISYTGYDMEDAMILNKS++ERGF +G 
Sbjct: 741 RLQTGQTPVVRPALHNTYAMDSFPNGMNAVVAVISYTGYDMEDAMILNKSAHERGFGYGT 800

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           ++KS  ++L          T   G   S  Q  +FFG+    R                 
Sbjct: 801 VYKSQIVDL----------TDLHGPVKSTSQTPLFFGLARDVR----------------- 833

Query: 817 DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
              +    +K+  DGL  VG +    DP+ +Y  E+  R    +Y G E    + VR+  
Sbjct: 834 --RDDKRREKVDEDGLPIVGQQYLPGDPIAAYVDETSGRTKFVKYKGDEVAYTDCVRLIG 891

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
           G  + G       +I  RI R P +GDKF+SR GQKG+CS KWPA D+PF++SG+ PD++
Sbjct: 892 G--DAGDTELQKIHIMLRIPRAPVIGDKFSSRHGQKGVCSQKWPAVDMPFSESGIQPDVI 949

Query: 937 FNPHGFPSRMTIGFL 951
            NPH FPSRMTIG L
Sbjct: 950 INPHAFPSRMTIGML 964



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + +G+NYYG E MYSG+ G    A I+FGVV+YQRLRHMV+DK+Q +
Sbjct: 1002 VAAGFNYYGNEPMYSGITGEEFAADIYFGVVYYQRLRHMVNDKFQVR 1048


>gi|344248836|gb|EGW04940.1| DNA-directed RNA polymerase I subunit RPA2 [Cricetulus griseus]
          Length = 996

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 349/835 (41%), Positives = 472/835 (56%), Gaps = 99/835 (11%)

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
           M+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  RRN PIA+ R  WK
Sbjct: 1   MVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 60

Query: 231 NRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL------------ 278
           +RGL ++  GV +  V+ + SA N  LH+V NG+    F +RK +  L            
Sbjct: 61  SRGLGYTHFGVSMHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFVLKALVSF 120

Query: 279 ------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL 314
                                    M++++ EEG  TQ     + G+ F+ KL     + 
Sbjct: 121 SDYQIFQELIKGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYLGERFRVKLSLPEWYP 180

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
           NE E   ++   CI  HL    +KF  L  MT KLF + +G    D+ DS++ QE++T G
Sbjct: 181 NE-EAAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPG 239

Query: 375 SLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASSIESAMTNFLATGN 418
            L+L  LK               K    T+  +   ++   F   + +       LATGN
Sbjct: 240 QLFLMFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSMGTELTRPFEYLLATGN 299

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
           + +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF
Sbjct: 300 LRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 357

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA 537
           +CPVHTPDG PCGLLNHLT  C++ ++++ +   A +P++L  LG+ P+           
Sbjct: 358 LCPVHTPDGAPCGLLNHLTAICEVVTKFVYT---ASVPALLCGLGVTPVDATPCRPYSDC 414

Query: 538 LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYL 596
             V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+  +    K   LYPGL+L
Sbjct: 415 YPVLLDGVMVGWVDKELAPDVADTLRRFKVLREKRIPPWMEVALVPMTGKP-SLYPGLFL 473

Query: 597 FTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
           FT P R++RPV NL  G  E IGT EQ+FM++ I   E + GI+TH+EL     LS +AN
Sbjct: 474 FTTPCRLVRPVQNLELGKEELIGTMEQLFMNVAIFEDEVFSGISTHQELFPHSLLSVIAN 533

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
            IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD   M
Sbjct: 534 FIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPCMYDYYSM 593

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           DN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E 
Sbjct: 594 DNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEK 645

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
              G D  +                            FG  P +  +  KL  DGL ++G
Sbjct: 646 FKQGNDNLV----------------------------FGIKPGDPRVMQKLDDDGLPFIG 677

Query: 837 AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
           AKL   DP YSY   +        Y  KE   V+ +++ S  T  G     C  I  R+ 
Sbjct: 678 AKLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKF--KCICITIRVP 735

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 736 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 790



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 830 AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 889

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 890 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 943


>gi|409050465|gb|EKM59942.1| hypothetical protein PHACADRAFT_115318 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 1224

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 374/997 (37%), Positives = 538/997 (53%), Gaps = 128/997 (12%)

Query: 44  PSLKNLT-DKNFGKPPDKQNEFLLTLG---APHIASFDFMLDEG------------LDLA 87
           P+   L+ +KNF  PP K    + TL     PH+ SF+ + D+             L   
Sbjct: 12  PTFDTLSREKNFKHPP-KNGHVVPTLNEFVTPHLESFNALFDDSGLPQGDGDDRGLLSQG 70

Query: 88  VEDIAPIEF-------------EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEA 134
           + DI                    +G  L +   + +++ P V          K YPTEA
Sbjct: 71  IADIGERAVFDGKGQVGEESGQRGWGNRLTVWYEQVSVARPMVSEKDQIARVRKTYPTEA 130

Query: 135 RQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHP 194
           R+  + Y G     + W  +        ++ G +PIM++S RC+LR ++ A+L++  E P
Sbjct: 131 RERLTSYRGRMTTRLCWRINDGPVEKENRDCGLLPIMVRSVRCNLRGMSSAELVQHHEEP 190

Query: 195 DEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATN 254
           +E+GGYFI+ G+E+L+R LI  RRNH I++ R ++ NRG  ++   V IR V+ D+++  
Sbjct: 191 EEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFTNRGPSYTPHAVQIRCVRPDQTSVT 250

Query: 255 NVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--------K 306
           N LH+++NGSA   FS RK   ++ +M  L  + +    D ++F G + +E        +
Sbjct: 251 NTLHYLSNGSATLRFSWRKQEYVIPIMLIL--KALVGVSDKEIFEGVMMQEYEDTFLTDR 308

Query: 307 LQYDLRHLNEVEI-----C------------------------DYMLTNCILPHLDDYWD 337
           ++  LR      +     C                         +++   +L HLD   D
Sbjct: 309 VEMLLRSFKAYSLYTGDQCLEYLGNKFRVVLGMPEDWTNKALGTWLVDKLVLVHLDSPRD 368

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-KSGTSAVLKESD 396
           KF  L  M  KLF VV G   +D+ DS   QE++  G+LY  ++K+  +   +  ++   
Sbjct: 369 KFRMLLFMLRKLFAVVSGSCSVDNPDSPQHQEVLLPGALYGMIIKERLEEALNNFVRSIQ 428

Query: 397 IYAAFRASSIE-------------------SAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
           I       S++                   + M+NFLATGN+ +   S L L QASGF I
Sbjct: 429 IDVQRDEPSVDFFDKRYIKKMLQKINYEIGARMSNFLATGNLVSA--SGLDLQQASGFTI 486

Query: 438 MAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
           +AE +N +RY+SHFR++HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL+
Sbjct: 487 VAEKLNWLRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLS 546

Query: 498 TNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE--QALMVMLDGRIVGYILDQIA 555
             C+I        +A IP++LVS GM   T    ++ +  + L + LDGR++G+     A
Sbjct: 547 RTCRI--VTQPLAVAHIPALLVSHGM---TQAFSTLVDGRRNLCIQLDGRVIGWAPQNTA 601

Query: 556 TSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
             L   LR+ K  G+  +P  LEI Y+  P    G YPGLYLF+   RM+RPV  L+ G 
Sbjct: 602 QRLATSLRIWKTEGKHNVPLDLEIGYV--PTSQGGQYPGLYLFSSRSRMMRPVKYLSNGR 659

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
            + IG+FEQV+M+I  T +E   G+ +H E   T+FLS LANL P  D NQSPRN+YQCQ
Sbjct: 660 NDQIGSFEQVYMNIACTPEEIEKGVFSHVEHKPTNFLSILANLTPFSDFNQSPRNIYQCQ 719

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ+MGTP    R++   KLYRLQT  SP  RP  +DT  MD+FP GTNAIVAVISYTG
Sbjct: 720 MGKQSMGTPSTTLRHRTDNKLYRLQTGQSPVVRPALHDTYGMDSFPNGTNAIVAVISYTG 779

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDMEDAMILNKS++ERGF +G ++KS  I+L+             G   S     + FG 
Sbjct: 780 YDMEDAMILNKSAHERGFGYGTVYKSQIIDLKD----------LQGRSASSSAPTLHFGF 829

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN 854
            +  +                 D A+   E  L  DGL YVG +LN  DP+ +Y  ++  
Sbjct: 830 GYDIKTEG--------------DKAHSCCE-FLDLDGLPYVGTRLNPGDPIAAYIDDTTG 874

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGI 914
           R    +Y G E   V+ VR+    ++ G       +I  RI R P +GDKF+SR GQKG+
Sbjct: 875 RTRFVKYKGDETAYVDTVRLLG--SDAGDQELQKVHITLRITRAPVIGDKFSSRHGQKGV 932

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           CS KWP  D+PFT+SG+ PD++ NPH FPSRMTIG L
Sbjct: 933 CSQKWPMIDMPFTESGMQPDVIINPHAFPSRMTIGML 969



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            L +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 1007 LAAGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDPVTR 1063


>gi|448537526|ref|XP_003871349.1| Rpa135 RNA polymerase I subunit A135 [Candida orthopsilosis Co
           90-125]
 gi|380355706|emb|CCG25224.1| Rpa135 RNA polymerase I subunit A135 [Candida orthopsilosis]
          Length = 1166

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 366/973 (37%), Positives = 524/973 (53%), Gaps = 119/973 (12%)

Query: 51  DKNFGKPPDKQNE---FLLTLGAPHIASFDFMLD--EG--LDLAVEDIAPI------EFE 97
           +K F  PP  ++E    L    APHI SF+ + D  +G  L++AV+DI         E +
Sbjct: 12  EKRFQNPPKNKSEIYPLLENAVAPHIGSFNALNDGEDGGLLNMAVKDIGSKTIFDSKEAD 71

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  L + +   +I++P VP         K  P+E R+  + Y     + V WS +   
Sbjct: 72  RLGNKLNIRVESVSIAKPSVPPTDKLSINRKTLPSECRERMTTYKARLMLNVTWSVNDGE 131

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +E G++PIMLKS RCHL+ ++P QL+E  E  DE GGYFIV G EKL+R+LI  R
Sbjct: 132 EQSEIREAGQIPIMLKSNRCHLQKMSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQR 191

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS--- 274
           RNHP+AI R ++ NRG  ++  G+ IRSV+ D+++  NVLH++ +G+  F FS +K+   
Sbjct: 192 RNHPMAIIRPSFANRGASYTKYGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWKKNEYL 251

Query: 275 ----MCLLGMMQSLHEE-----------------------------GIHTQHDSKVFFGQ 301
               M L  ++++   E                              +H+Q ++  + G 
Sbjct: 252 VPVVMILKALVETNDREIFDGIVGHDVENSFLTDRLELLLRTFKSYNLHSQQETLAYLGD 311

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+         ++++++   +L   +L HL +  DKF  L  M  KL+ +V G    D+
Sbjct: 312 KFRVVFGA-TPDVSDIDVGKEVLRRIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCAPDN 370

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS-------------- 404
            D+   QE++ GG LY  ++K++        K   +SDI      +              
Sbjct: 371 PDATQHQEVLLGGFLYGMIIKEKIDEYLQNFKLQVQSDINRGVGVNFSDRKYITRVFSRI 430

Query: 405 --SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
             +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F E
Sbjct: 431 NENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAE 488

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           ++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C I+    +  ++Q+P+ L  LG
Sbjct: 489 LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCIIA--TTASDVSQVPAALAQLG 546

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYL 581
           + P      + P+    V LDG+IVG+   +    +   LR  K+ G   +P  LEI Y+
Sbjct: 547 VSPAN-AFAAGPDLCC-VQLDGKIVGWTTHEQGKIVADTLRFWKVEGTHGLPLDLEIGYV 604

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
             P    G YPGLYLF G  RM+RPV  L  G  + +G FEQV+M++ +T +E    I +
Sbjct: 605 --PPSSKGQYPGLYLFGGHSRMMRPVKYLPLGKEDIVGPFEQVYMNVAVTPEEIENNIHS 662

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP     ++   KLYRLQT 
Sbjct: 663 HVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTG 722

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+NKS+ ERGF +G ++K  
Sbjct: 723 QTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVE 782

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            I+L          T + G                                 FG D   +
Sbjct: 783 KIDLSQSRRRGDPITQHFG---------------------------------FGEDEWPE 809

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSGF 878
             + KL  DG   +G K+ E DP+ +Y+ ++  +     Y   E   +E V++    +G 
Sbjct: 810 TWKTKLDDDGFPLIGVKVEEGDPILAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDAGD 869

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
            EG  VT     I YRI R P +GDKF+SR GQKG+CS KWP  D+PFT+SG+ PD++ N
Sbjct: 870 NEGQQVT-----IKYRITRQPIIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIIN 924

Query: 939 PHGFPSRMTIGFL 951
           PH FPSRMTIG  
Sbjct: 925 PHAFPSRMTIGMF 937



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYN++G E MYSG  G  ++  I+ G V+YQRLRHMV+DK+Q +
Sbjct: 975  LKAGYNFHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 1021


>gi|406607667|emb|CCH40939.1| DNA-directed RNA polymerase I subunit A2 [Wickerhamomyces ciferrii]
          Length = 1171

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 367/974 (37%), Positives = 530/974 (54%), Gaps = 122/974 (12%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIAPI------EFE 97
           +K F  PP  ++ + L   A  PH+ SF+  L EG     L+L V+DI         + +
Sbjct: 18  EKRFQNPPKDKSAYPLLEEAVKPHVGSFN-ALTEGPDGGLLNLGVKDIGTKTIFDSNDVD 76

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  LK+ +    +++P VP         + +P+EAR+    Y G   + V WS + + 
Sbjct: 77  RLGNKLKIRVDSVQLAKPSVPNNDKLSIDRRTWPSEARERMVSYRGKLLIKVCWSVNDEE 136

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +EVG++PIMLKS RCHL  L+P QL+ + E  DE GGYFIV G EKL+R+LI  R
Sbjct: 137 EVSEIREVGQIPIMLKSNRCHLEKLSPDQLVAQKEESDELGGYFIVNGIEKLIRMLIVQR 196

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+AI R ++ NRG  +S  G+ IRSV+ D+++  NVLH++ +G+  F FS +K+  L
Sbjct: 197 RNHPMAIIRPSFTNRGASYSQFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWKKNEYL 256

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR----------------- 312
           + +M  L  + +   +D ++F G +          ++L+  LR                 
Sbjct: 257 VPVMMIL--KALVETNDREIFDGIVGSDLDNSFLTDRLELLLRSFKTYKLHSNQETLAYL 314

Query: 313 ------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                        +++VE+   +L   +L HLD   DKF  L  M  KL+ +V G    D
Sbjct: 315 GDKFRVVFNATPDVSDVEVGKEVLKRIVLVHLDSNRDKFRMLLFMIRKLYTLVAGDCSPD 374

Query: 361 SEDSIMLQEIMTGGSLYLQLLKK---EKSGTSAVLKESDIYAAFRAS------------- 404
           + D+   QE++ GG LY  ++K+   E      +  +SDI      +             
Sbjct: 375 NPDATQHQEVLLGGFLYGMIIKEKIEEYLNNIRLQIQSDINRGIAINFNDRKYMSRVFMR 434

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 435 INENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFA 492

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C IS    +  ++++P  L +L
Sbjct: 493 QLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCSIS--TQASDVSKVPEALSAL 550

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVY 580
           G+ P   V  + P  A  V LDG+IVG+     A  +   LR  K+ G+  +P  LEI Y
Sbjct: 551 GVSP-AHVFAAGPNVAC-VQLDGKIVGWTTHDQAKIVADTLRFWKVEGKHGLPLDLEIGY 608

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGLY+F G  RM+RPV  L     + +G FEQV+MD+ +T +E    + 
Sbjct: 609 V--PPSAKGQYPGLYIFGGHSRMMRPVRYLPLDKQDIVGPFEQVYMDVAVTPEEIENNVH 666

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           +H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQ+
Sbjct: 667 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQS 726

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K 
Sbjct: 727 GQTPIVKANLYDEYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKV 786

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L          T + G                                 FG D   
Sbjct: 787 EKVDLSQSRRRGDPITQHFG---------------------------------FGTDEWP 813

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSG 877
           K   + L  DGL  +G ++ E DP+ +Y+ E+  +     Y   E   +E V++    +G
Sbjct: 814 KEWRNFLDTDGLPMIGGRVEEGDPIVAYYDETVGKTKVKTYHSSEGAFIEEVKLLGDDNG 873

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
            +E   +T     I YRI R+P +GDKF+SR GQKG+CS KWP  DLPFT++G+ PD++ 
Sbjct: 874 DSEFQQLT-----IKYRITRSPLIGDKFSSRHGQKGVCSRKWPTVDLPFTETGMQPDVII 928

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 929 NPHAFPSRMTIGMF 942



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +SGYNY+G E MYSG  G  ++  I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 981  KSGYNYHGNEPMYSGATGEELRCDIYIGVVYYQRLRHMVNDKFQVR 1026


>gi|341880642|gb|EGT36577.1| hypothetical protein CAEBREN_11996 [Caenorhabditis brenneri]
          Length = 1128

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 350/946 (36%), Positives = 510/946 (53%), Gaps = 108/946 (11%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY-GKTLKLNIVKAAISEPKVPAGP-VGIH 125
           + + H++SFDF++ EG   A + I   +F +  G  + +    A + +P + +G  + + 
Sbjct: 5   IASYHVSSFDFLVTEGCQYAAQAIPAEKFRLKNGDAVTMKFTSAQLFKPSLDSGAKLTVD 64

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
                P E RQ    Y+G   V +    +G         +G+VPIML+S+ CHLR ++  
Sbjct: 65  TLPVMPAECRQRGLTYAGNLKVGIDVHVNGSRLDMIETILGKVPIMLRSEGCHLRGMSRE 124

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           +L+  GE P E GGYFIV G EK++RLLI NRRN PIAI R  +K +G LFS+ GV +RS
Sbjct: 125 ELVAAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGRLFSEFGVMMRS 184

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRK-------------------------------- 273
           VK + +A    LH++  G+ +     R+                                
Sbjct: 185 VKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYVVKALTDKNDAVIAAGFKRGRPQ 244

Query: 274 ----SMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-NEVEICDYMLTNCI 328
               S C+L M+    EEGI  Q  +    G  F+  +   +    +++E   +++  C+
Sbjct: 245 DQFFSSCILNMLAQCQEEGILNQQSALRAIGSRFRVAISDRVAPWEDDLEAGRFIIRECV 304

Query: 329 LPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---- 384
           L HL+   +KF  L++M  KL  +V+G    ++ D+   QE    G + L +L++     
Sbjct: 305 LIHLNSDEEKFFTLAYMAQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENI 364

Query: 385 -----------KSGTSAVLKESDIYAAF---RASSIESAMTNFLATGNVSAGKNSTLQLM 430
                       + +  +L  + I  A        I   M  FLATGN+       L L 
Sbjct: 365 IGMVRRKLEFMSAKSDFILTSAAIIKALGNHNGGEITRGMAYFLATGNLVT--RVGLALQ 422

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SGF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG PC
Sbjct: 423 QESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPC 482

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM-VMLDGRIVGY 549
           GLLNH+T +C+I  ++     + +P++L  LGM     V  + P + L  V++DGR +GY
Sbjct: 483 GLLNHVTASCRIVTHLTDN--SNVPAMLSELGMYTQKTVTLAPPGEELYPVLMDGRFIGY 540

Query: 550 ILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGL---YPGLYLFTGPGRMLR 605
           +    A S+   LR  K+  + +IP + EI  ++R      +   YPG+Y+ + PGR++R
Sbjct: 541 VPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQTQYPGIYILSDPGRLIR 600

Query: 606 PVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
           PV NLA   +E IGTFEQV++ + I  +EA PG+T H+EL  +   S   NLIP PD NQ
Sbjct: 601 PVRNLAMDTVEQIGTFEQVYLSVVIDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ 660

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRN+YQCQMGKQTMGT   +W  +   K+YRLQ P  P  +   Y+  +MD +P+GTNA
Sbjct: 661 SPRNVYQCQMGKQTMGTAVHSWHSRADNKMYRLQFPQQPLLKLEAYEKYEMDEYPLGTNA 720

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
            VAVISYTGYDMEDAM +NK+SY+RGFAHG + K   I L                    
Sbjct: 721 CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL-------------------- 760

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM 845
                             V+++ + K  F ++P  +     +G DGL   G +    +  
Sbjct: 761 ------------------VTER-EKKTIFYKNPREEI--KTVGSDGLPIPGRRYFLDEVY 799

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
           Y  +      + T ++   E     +VR+     EG S     A I +RI+RNP +GDKF
Sbjct: 800 YVTYNVETGDFKTHKFHYAEPAYCGLVRIVEQ-GEGSSNGSQHALIQWRIERNPIIGDKF 858

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ASR GQKGI S  WP E LPF+++G+VPDI+FNPHGFPSRMTIG +
Sbjct: 859 ASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMM 904



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 42/53 (79%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           ++GYNYYG ET YSGVDG  M+ QIFFG+V+YQRLRHM++DK+Q +     DP
Sbjct: 943 KAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDP 995


>gi|167537729|ref|XP_001750532.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770953|gb|EDQ84628.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1136

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 360/950 (37%), Positives = 513/950 (54%), Gaps = 127/950 (13%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           L T  APH+ SF++M+  GL+ AV D+ P+ F    KT+ L+I K  + +P V       
Sbjct: 44  LKTATAPHVDSFNYMVKHGLEQAVADLDPLTFVAQNKTISLSIAKCRLEQPTVSRKEGFS 103

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG-TFTKEVGRVPIMLKSKRCHLRNLT 183
             N  YP E RQ R  Y G F +TV    +G+       + VG++PIM+ S  C L  L+
Sbjct: 104 TANALYPAECRQRRVTYKGDFYLTVNIEVEGQPNAWQVERYVGQLPIMIMSNACRLNGLS 163

Query: 184 PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYI 243
           P +L+ + E   E GGYFI+ G+EK+VR+L+  RRNHPI + R ++ NRG  +S  GV +
Sbjct: 164 PRELVMKKEEAQEMGGYFIINGNEKIVRMLLMPRRNHPICLDRPSYVNRGPGYSSYGVQM 223

Query: 244 RSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG------------------------ 279
           R V+ D+SA   V+H+  +G+    FS+RK   L+                         
Sbjct: 224 RCVRPDQSAQTVVVHYKNDGTCTLGFSYRKQQYLIPAILLLRALSGVSDRQIFMDIVRGD 283

Query: 280 ------------MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNC 327
                       M++    E + +Q     + G +FK  L       ++VE    +    
Sbjct: 284 MSNSFLVERVEIMLRQYTRERLFSQQACLAYLGNLFKVILNLH-PETSDVEAAHILFKRV 342

Query: 328 ILPHL--DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEK 385
           +L H+  +D+  K+  L  +  +++ +  G  Q D+ DS MLQE++  G +Y   +K++ 
Sbjct: 343 LLVHIAPNDFQAKYRVLVGLIRRVYSLAAGSTQPDNADSQMLQELLLPGHIYCAFVKEQM 402

Query: 386 SGTSAVLK---ESDIYAA----------------FRASSIESAMTNFLATGNVSAGKNST 426
           S     ++   ++D+                    R   I S +  F++TGN+++   + 
Sbjct: 403 SEYLVAMQKLVQTDLRMGKTVDVSNTNYLQTDVMRRCPDIGSKLEYFMSTGNLNSP--TA 460

Query: 427 LQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
           L  MQ +GF I+A+ +N +RY+SHFR VHRG+YF +M+++  R+L  +AWGF+CPVHTPD
Sbjct: 461 LDQMQVTGFTIVADKLNFLRYLSHFRCVHRGAYFSQMKTTAVRKLLPEAWGFLCPVHTPD 520

Query: 487 GTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ----ALMVML 542
           G PCGLLNHL  +C +    P  + + +P  L+ LGM+       ++ EQ     L V+L
Sbjct: 521 GAPCGLLNHLARHC-LPPTEPVDI-SSLPPTLLGLGMI-------AVSEQPHFHCLDVLL 571

Query: 543 DGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           DG +VG++  + A     +LR+LKI   E++P +LEI Y+    +  G +PGLYLF+ P 
Sbjct: 572 DGHLVGFLALEQAPKFAEQLRILKIRDDERVPNTLEIAYVA--PRAAGQFPGLYLFSTPA 629

Query: 602 RMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
           R+LRPV NL   + E++G+FEQV++++ +  KE   G TTH EL+K  FLS +A+  P  
Sbjct: 630 RLLRPVRNLRMKSTEFVGSFEQVYLNVAVDPKEFVSGETTHMELTKHGFLSIVASFTPFS 689

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           D NQSPRNMYQCQMGKQTMG P    +Y+   KLY L +  +P  RP  Y+   +DNFP+
Sbjct: 690 DFNQSPRNMYQCQMGKQTMGVPGQAIKYRADNKLYSLNSGQTPLVRPRAYNEYGVDNFPV 749

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G NAIV VI+YTGYDMEDAMILNK S ERGF H  +  +  I+L        TE   S V
Sbjct: 750 GNNAIVCVIAYTGYDMEDAMILNKGSVERGFMHARVLATKVIDL--------TEKTKSRV 801

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
                    +FGV+   R                   AN  +E KL  DGL  VGA + E
Sbjct: 802 ------CHYYFGVLPKDR------------------SANLKME-KLDADGLPRVGAHIKE 836

Query: 842 RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
            D +YSY   S N   T  Y G+  +    V                  I   I RNP +
Sbjct: 837 GDALYSYIDGSTNESRTEIYRGEPAIIDRKVT-----------------IRLSINRNPII 879

Query: 902 GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GDKFASR GQKGI S  WP  D+PF++SG++PDI+FNPHGFPSRMTIG L
Sbjct: 880 GDKFASRHGQKGILSQLWPTADMPFSESGIIPDILFNPHGFPSRMTIGML 929



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNY+G E MYSG+ G   +  IF G V YQRLRHMVSDK+Q +
Sbjct: 969  AGYNYHGHERMYSGITGEEFEVDIFIGNVFYQRLRHMVSDKFQVR 1013


>gi|50425489|ref|XP_461338.1| DEHA2F22902p [Debaryomyces hansenii CBS767]
 gi|49657007|emb|CAG89744.1| DEHA2F22902p [Debaryomyces hansenii CBS767]
          Length = 1167

 Score =  613 bits (1582), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 362/974 (37%), Positives = 524/974 (53%), Gaps = 122/974 (12%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG-----LDLAVEDIAP------IEFE 97
           +K F  PP  ++ +  L    APHI SF+  L EG     L+LAV DI         + +
Sbjct: 11  EKRFQNPPKDKSAYPLLAEAVAPHIGSFN-ALTEGPGGGLLNLAVNDIGSKIIFDSSDVD 69

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  L + +    +++P VP         + YP+E R+  S Y     + V WS +   
Sbjct: 70  RLGNKLNIRVESVQLAKPSVPVNDKLSINRRTYPSECRERMSTYRSRLMLKVTWSVNDGD 129

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +E G+VP+MLK+ RCHL  L+P++L+++ E  DE GGYFIV G EKL+R+LI  R
Sbjct: 130 EVSEIREAGQVPVMLKTNRCHLEKLSPSELVDQKEESDEMGGYFIVNGIEKLIRMLIVQR 189

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+AI R ++ NRG  ++  G+ IR V+ D+++  NVLH++ +G+  F FS +K+  L
Sbjct: 190 RNHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQTSQTNVLHYLNDGNVTFRFSWKKNEYL 249

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR----------------- 312
           +  M  L  + +   +D ++F G I          ++L+  LR                 
Sbjct: 250 VPAMMIL--KALIETNDREIFDGIIGADTSNSFLTDRLELLLRTYKQYNLYSKQETLAYL 307

Query: 313 ------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                        ++++E+   +L   +L HL +  DKF  L  M  KL+ +V G    D
Sbjct: 308 GDKFRIVFGSAPDVSDIEVGKEVLQRIVLVHLPNNLDKFRMLLFMIRKLYSLVAGDCCPD 367

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------------- 404
           + D+   QE++ GG LY  ++K++       +K   +SDI      +             
Sbjct: 368 NPDATQHQEVLLGGFLYGMIIKEKIDEYLQNIKLQIQSDINRGIAINFNDRKYMSRVFLR 427

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 428 INENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFA 485

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  CQI+    +  ++Q+P  L  L
Sbjct: 486 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCQIA--TEASDVSQVPVALAQL 543

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVY 580
           G+ P      +       V LDG+++G+   +    +   LR  K+ G   +P  LE+ Y
Sbjct: 544 GVSPAHSF--AAGPNLCCVQLDGKVMGWTTHEHGKIVADTLRYWKVEGNHGLPLDLEVGY 601

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGLYLF G  RM+RP   L     + +G FEQV+MD+ +T  E    I 
Sbjct: 602 V--PPSTKGQYPGLYLFGGHSRMMRPTKYLPLNKTDILGPFEQVYMDVAVTPAEIENNIH 659

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQT
Sbjct: 660 THVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALNHRSDNKLYRLQT 719

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K 
Sbjct: 720 GQTPIVKASLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKV 779

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L          T + G                                 FG D   
Sbjct: 780 EKVDLSQSRRRGDPITQHFG---------------------------------FGTDEWP 806

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSG 877
           ++  +KL  DGL  +G K++E DP+ +Y+ ++  R     Y   E   +E V++    SG
Sbjct: 807 ESWREKLDADGLPLIGVKVDEGDPIVAYYDDTLGRTKVKTYHSTEPAYIEEVKLLGDDSG 866

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             EG  +T     I YRI R P +GDKF+SR GQKG+CS KWP  D+PF+++G+ PD++ 
Sbjct: 867 DQEGQQIT-----IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQVDMPFSETGIQPDVII 921

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 922 NPHAFPSRMTIGMF 935



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ G V+YQRLRHMV+DK+Q +
Sbjct: 974  KAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVNDKFQVR 1019


>gi|392592938|gb|EIW82264.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Coniophora puteana RWD-64-598 SS2]
          Length = 1224

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 371/999 (37%), Positives = 541/999 (54%), Gaps = 130/999 (13%)

Query: 44  PSLKNLTDKNFGKPPDKQ-------NEFLLTLGAPHIASFDFMLDEG------------L 84
           P+   L  ++  + PD++       NEF+     P + SF+ + D+             L
Sbjct: 12  PTFDTLAREDAFRNPDQKTSTYPILNEFV----TPLLESFNALFDDSGLPKGDGDGRGLL 67

Query: 85  DLAVEDIAP-IEFEI------------YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
            LAV+DI   + F+             +G  L + I   ++S P+V          + YP
Sbjct: 68  SLAVKDIGERVVFDGTGQIGTESGQTGWGNRLSIWIEDVSLSAPRVTDKDTWSTERRVYP 127

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKA-GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           +EAR+    Y G     + W  +G+    +  ++ G VPIM++S RC+LR+L  ++L+ R
Sbjct: 128 SEARERLVSYRGRMQAKICWRINGEEPTQSIMRDCGLVPIMVRSVRCNLRSLPSSELVRR 187

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E P+E+GGYFI+ G+E+L+R LI  RRNH I++ R ++ NRG  ++   V IR V+ D+
Sbjct: 188 HEEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFTNRGPSYTQHAVQIRCVRPDQ 247

Query: 251 SATNNVLHFVTNGSARFMFSHRKS----------MCLLG--------------------- 279
           ++  N LH++ NGSA   FS RK             L+G                     
Sbjct: 248 TSATNTLHYLANGSAMLRFSWRKQEYVIPVMLILKALIGASDKEIFEHLMMQDFDNTFLS 307

Query: 280 -----MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDD 334
                +++S     ++T      + G  F+  L       N+  +  ++L   +L H D 
Sbjct: 308 DRVELLLRSFKRFALYTGEQCLEYLGDKFRVVLGLPEDWTNKA-LGVWLLQKMVLVHADS 366

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-KSGTSAVLK 393
             DKF  L  M  KL+ +V G    D+ DS   QE++  G LY  ++K+  + G +AV  
Sbjct: 367 ARDKFRMLIFMLRKLYALVSGACCGDNPDSPQHQEVLLPGYLYGMIIKERLEEGLNAVRN 426

Query: 394 ESDIYAAFRASSIE-------------------SAMTNFLATGNVSAGKNSTLQLMQASG 434
           + +I        ++                   + M NFLATGN+ +   S L L QASG
Sbjct: 427 QINIDVRRSEPPVDFIDKRYITKVINKVNWDIGAKMANFLATGNLIS--PSGLDLQQASG 484

Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
           F I+AE +N +RY+SHFR++HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLN
Sbjct: 485 FTIVAEKLNWLRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLN 544

Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGML-PLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
           HL+  C+I        +A IP++LV+ GM    +  I     + L V LDGR++G+    
Sbjct: 545 HLSRTCRI--VTSPLAVAHIPALLVAHGMTQAFSASIDG--RKNLCVQLDGRVIGWARPS 600

Query: 554 IATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
           +A  L   LR  K  G+ ++P  LEI ++  PE   G YPGL+LF+   RM+RPV  L  
Sbjct: 601 VARQLAGNLRFWKTEGQHQVPMDLEIGFV--PESRGGQYPGLFLFSTRARMMRPVKYLLN 658

Query: 613 GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
           G  + IG+FEQV+MDI I   E  P ++TH E + T+FLS LANL P  D NQSPRN+YQ
Sbjct: 659 GKADQIGSFEQVYMDIAIQPSEIEPDVSTHVEHAPTNFLSILANLTPFSDFNQSPRNIYQ 718

Query: 673 CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
           CQMGKQTMGTP    +++   KLYRLQT  +P  RP  ++T  MD +P GTNAIVAVISY
Sbjct: 719 CQMGKQTMGTPSTVMQHRTDNKLYRLQTGQTPIVRPRLHNTYAMDAYPNGTNAIVAVISY 778

Query: 733 TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFF 792
           TGYDMEDAMILNKS++ERGF +G ++KS  ++L+             G   +     + F
Sbjct: 779 TGYDMEDAMILNKSAHERGFGYGTVYKSSIVDLKD----------MRGASKATSAPTLHF 828

Query: 793 GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES 852
           G+ +   +   + DK              A  + +  DGL  +GAKLN  DP+ +Y  ++
Sbjct: 829 GLGY--EINTTLGDK------------QHACCNFVDQDGLPIIGAKLNAGDPLAAYVDDN 874

Query: 853 ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
             R    +Y G E+  V+ VR+     + G        +  RI R+P +GDKF+SR GQK
Sbjct: 875 TGRTKFVKYKGDEQAIVDTVRVIGA--DAGDSELQKIQVTLRITRSPVIGDKFSSRHGQK 932

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G+CS KWPA D+PFT+SG+ PD++ NPH FPSRMTIG L
Sbjct: 933 GVCSQKWPAVDMPFTESGMQPDVIINPHAFPSRMTIGML 971



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 35/47 (74%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +
Sbjct: 1009 LAAGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVR 1055


>gi|150865654|ref|XP_001384965.2| DNA-directed RNA polymerase I [Scheffersomyces stipitis CBS 6054]
 gi|149386910|gb|ABN66936.2| DNA-directed RNA polymerase I [Scheffersomyces stipitis CBS 6054]
          Length = 1167

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 364/974 (37%), Positives = 523/974 (53%), Gaps = 122/974 (12%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG-----LDLAVEDIAPI------EFE 97
           +K F  PP  ++ +  L    APH+ SF+  L EG     L+LAV+DI         + E
Sbjct: 11  EKRFQNPPKDESAYPLLKDAVAPHVGSFN-ALTEGPDGGLLNLAVKDIGTKTIFDSNDSE 69

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  L++ +    +++P VP         + +P E R+  S Y     + VAWS +   
Sbjct: 70  RLGNKLRIRVESLQLAKPAVPNNDKISINRRTFPAECRERMSTYRSRLMLKVAWSVNDGD 129

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +E G+VPIMLK+ RCHL  L+P +L+E+ E  DE GGYFIV G EKL+R+LI  R
Sbjct: 130 EVSEIREAGQVPIMLKTNRCHLEKLSPQELVEQREESDELGGYFIVNGIEKLIRMLIVQR 189

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+AI R ++ NRG  ++  G+ IRSV+ D+++  NVLH++ +G+  F FS RK+  L
Sbjct: 190 RNHPMAIIRPSFGNRGAAYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYL 249

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR----------------- 312
           + +M  L  + +   +D ++F G +          ++L+  LR                 
Sbjct: 250 VPVMMIL--KALIETNDREIFDGIVGADSANSFLTDRLELLLRTYKQYNLYSKQETLAYL 307

Query: 313 ------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                        ++++E+   +L   +L HL D  DKF  L  M  KL+ +V G    D
Sbjct: 308 GDKFRVVFGATPDVSDIEVGKEVLRRIVLVHLPDNADKFRMLLFMIRKLYSLVAGDCSPD 367

Query: 361 SEDSIMLQEIMTGGSLYLQLLKK---EKSGTSAVLKESDIYAAFRAS------------- 404
           + D+   QE++ GG LY  ++K+   E      +  +SDI      +             
Sbjct: 368 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNINLQIQSDINRGVAINFNDRKYMSRVFMR 427

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 428 INENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFA 485

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+    +  ++Q+P  L  L
Sbjct: 486 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCRIA--TEASDVSQVPKTLAQL 543

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVY 580
           G+ P      +       V LDG+IVG+   +    +   LR  K+ G   +P  LEI Y
Sbjct: 544 GVSPAHTF--AAGPNLCCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGGHGLPLDLEIGY 601

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGLY+F G  RM+RP   L     + +G FEQV+M++ +T  E    + 
Sbjct: 602 V--PPSAKGQYPGLYIFGGHSRMMRPAKYLPLDKPDVLGPFEQVYMNVAVTPAEIEGNVH 659

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQT
Sbjct: 660 THVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALMHRSDNKLYRLQT 719

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K 
Sbjct: 720 GQTPIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKV 779

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L          T + G                                 FG D   
Sbjct: 780 EKVDLSQSRRRGDPITQHFG---------------------------------FGDDEWP 806

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSG 877
           +   +KL  DGL  +G K+ E DP+ +++ E+  +     Y   E   +E V++    SG
Sbjct: 807 ETWREKLDADGLPLIGVKVEEGDPIVAFFDETSGKTKVKTYHSSEPAYIEEVKLLGDDSG 866

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             EG  +T     I YRI R P +GDKF+SR GQKG+CS KWP  D+PF+++G+ PD++ 
Sbjct: 867 DQEGQQIT-----IKYRITRQPNIGDKFSSRHGQKGVCSRKWPQIDMPFSETGIQPDVII 921

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 922 NPHAFPSRMTIGMF 935



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNY+G E MYSG  G  ++A I+ G V+YQRLRHMV+DK+Q +
Sbjct: 975  AGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVNDKFQVR 1019


>gi|402226318|gb|EJU06378.1| DNA-directed RNA polymerase I polypeptide 2 [Dacryopinax sp.
           DJM-731 SS1]
          Length = 1209

 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 371/974 (38%), Positives = 519/974 (53%), Gaps = 117/974 (12%)

Query: 54  FGKPPDKQNE--FLLTLGAPHIASFDFMLDEG--------LDLAVEDIA-PIEFEIY--- 99
           F  PP        L  L APHI SF+ + D          L L +EDI   + FE Y   
Sbjct: 20  FRNPPSDGTSVPILHELVAPHIQSFNALFDASGPGETKGLLKLGIEDIGEKVVFERYEDG 79

Query: 100 ----GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDG 155
               G  L + I    +  P VP         + +P EAR+  + Y G  ++ +AWS DG
Sbjct: 80  EPASGARLSIRIKDVIVGRPMVPDRDRVSKERRVFPFEARERLTSYRGRMSIKLAWSVDG 139

Query: 156 KAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLIN 215
                 T++ G +PIM++S RC+L+ ++ A+L+   E  +E+GGYF++ G+E+L+R LI 
Sbjct: 140 GQEEDDTRDCGLLPIMVRSDRCNLKGMSSAELVAHHEEAEEFGGYFLINGNERLIRYLIL 199

Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS- 274
            RRNH +++ R ++ NRG  ++   V +R V+ D+++  N LH++ NG+A   FS RK  
Sbjct: 200 PRRNHVMSLIRPSYTNRGASYTQYAVTMRCVRPDQTSLTNSLHYLVNGTAMLRFSWRKQE 259

Query: 275 ---------MCLLG--------------------------MMQSLHEEGIHTQHDSKVFF 299
                     CL+G                          +++S     + T      + 
Sbjct: 260 YTIPIMLILKCLMGASDKEVFEGIVMGDYQNTFLLDRVELLLRSFKNYSLPTSQQCLEYL 319

Query: 300 GQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
           G  F+  L        +V +  +++   IL HL    +KF  L  M  KL+ +V G    
Sbjct: 320 GHKFRVVLNLP-DDWEDVHVGSWLINKVILVHLPAAREKFRMLLFMLRKLYSLVSGASCA 378

Query: 360 DSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIE------------ 407
           D+ DS   QEI+  GSLY   +K+        ++        +   I+            
Sbjct: 379 DNPDSPQNQEILLPGSLYAMAIKERLEDALNQIRNMVTLDQRQGVPIDFHNKKYLNRLFK 438

Query: 408 -------SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYF 460
                  + M NFLATGN+ +   + L L QA+GF ++AE +N  RY+SHFR VHRG++F
Sbjct: 439 KINFDVGARMANFLATGNLIS--PTGLDLQQAAGFTVVAEKLNWYRYISHFRCVHRGAFF 496

Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVS 520
            E++++  R+L  ++WGF+CPVHTPDG PCGLLNHL+ +C I    PS  ++ IP++L S
Sbjct: 497 AELKTTTVRKLLPESWGFVCPVHTPDGAPCGLLNHLSRSCLIVTSTPS--VSHIPALLSS 554

Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIV 579
           LGM            Q L V LDGR++G+    IA  L   LR+ K   +  +P  LEI 
Sbjct: 555 LGMTEAFST-HVDGRQNLCVQLDGRVIGWASPTIAGQLAIALRLWKTEAKHNVPLDLEIG 613

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            +  PE   G YPGL+LF+   RM+RPV  L    I+ IG+FEQV+MDI I  +E  P +
Sbjct: 614 LV--PESKGGQYPGLFLFSQKARMMRPVKYLPNDRIDHIGSFEQVYMDIAIEPQEIIPNV 671

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
           +TH ELS T+FLS LANL P  + NQSPRN+YQCQMGKQ+MGTP      +   KLYRLQ
Sbjct: 672 STHVELSPTNFLSILANLTPFSNFNQSPRNIYQCQMGKQSMGTPSTALSRRTDNKLYRLQ 731

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           T  SP  RP  ++T  MD+FP GTNAIVAVISYTGYDMEDAMI+NKS++ERGF HG I+K
Sbjct: 732 TGQSPVVRPELHNTYGMDHFPNGTNAIVAVISYTGYDMEDAMIINKSAHERGFGHGTIYK 791

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD-- 817
           +  ++L          T   G         I FG+                    G D  
Sbjct: 792 THVLDL----------TEVRGSQKRSATPNIHFGI--------------------GTDIR 821

Query: 818 PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
           P +K  E  +  DGL +VG +L E DPM ++  ++  R V  +Y G E   V+ VR+  G
Sbjct: 822 PDDKRRE-FVDWDGLPFVGTRLLEGDPMGAHIDDTTGRTVFDKYKGIEVAYVDTVRLLGG 880

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             + G        +  RI R P +GDKF+SR GQKG+CS KWPA D+PF++SG+ PD++ 
Sbjct: 881 --DAGDTEAQKMQVTLRIPRPPVIGDKFSSRHGQKGVCSQKWPAIDMPFSESGMQPDVII 938

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 939 NPHAFPSRMTIGMF 952



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 38/55 (69%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +GYNYYG E+MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 992  AGYNYYGHESMYSGITGQEFAADIYIGVVYYQRLRHMVDDKFQVRTTGPVDPVTR 1046


>gi|426223601|ref|XP_004005963.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
           [Ovis aries]
          Length = 996

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 348/834 (41%), Positives = 468/834 (56%), Gaps = 97/834 (11%)

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
           M+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  RRN PIA+ R  WK
Sbjct: 1   MVKSKLCNLYSLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWK 60

Query: 231 NRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL------------ 278
           +RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  L            
Sbjct: 61  SRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSF 120

Query: 279 ------------------------GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL 314
                                    M++ + EEG  TQ     + G+ F+ KL     + 
Sbjct: 121 SDYQIFQELIKGKEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGERFRVKLNLPDWYP 180

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
           NE +  +++   CI  HL    +KF  L  MT KLF + +G    ++ DS+M QE++T G
Sbjct: 181 NE-QAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLMNQEVLTPG 239

Query: 375 SLYLQLLK---------------KEKSGTSAVLKESDIYAAFRAS-SIESAMTNFLATGN 418
            L+L  LK               K+   T+  L   ++   F     +       LATGN
Sbjct: 240 QLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSLGIDLTKPFEYLLATGN 299

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
           + +   + L  +Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF
Sbjct: 300 LRS--KTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 357

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL 538
           +CPVHTPDG PCGL+NHLT  C++     S   A IP++L SLG+ P+         +  
Sbjct: 358 LCPVHTPDGEPCGLMNHLTAICEV--VTQSVYTASIPALLCSLGVTPVDGTPHRPYSECY 415

Query: 539 MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLF 597
            V+LDG ++G+   +IA  +   LR  K++ EK IP  +E+V +    K   LYPGLYLF
Sbjct: 416 PVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLYLF 474

Query: 598 TGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANL 657
           T P R++RPV NL  G  E IGT EQ+FM++ I   E   G+TTH+EL     LS +AN 
Sbjct: 475 TTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVLAGVTTHQELFPHSMLSVIANF 534

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMD
Sbjct: 535 IPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMD 594

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
           N+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E +
Sbjct: 595 NYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKI 646

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA 837
             G D  +                            FG    +  +  KL  DGL ++GA
Sbjct: 647 KQGDDSLV----------------------------FGVKAGDPRVMQKLDDDGLPFIGA 678

Query: 838 KLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQR 897
           +L   DP YSY   +        Y  KE   V+ +++ S  T  G     C  I  R+ R
Sbjct: 679 QLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF--KCVCITMRVPR 736

Query: 898 NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           NPT+GDKFASR GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 737 NPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGML 790



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 830 AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 889

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 890 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 943


>gi|395329846|gb|EJF62231.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Dichomitus squalens LYAD-421 SS1]
          Length = 1230

 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 369/994 (37%), Positives = 538/994 (54%), Gaps = 136/994 (13%)

Query: 51  DKNFGKPPDKQ------NEFLLTLGAPHIASFDFMLDEG------------LDLAVEDI- 91
           +KNF  PP         NEF+     PHI SF+ + ++             L L +EDI 
Sbjct: 22  EKNFKSPPKDAAVVPILNEFV----TPHIESFNALFNDSGLPAGDGDGRGLLSLGLEDIG 77

Query: 92  ------------APIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRS 139
                       A      +G  L +   +  ++ P VP         + +PTEAR+  +
Sbjct: 78  RRVVFDGKGDIGAESGQRGWGNRLTMWYEQVTVARPMVPEKDKDAVERRVFPTEARERLT 137

Query: 140 VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
            Y G     + W  +        ++ G +PIM++S RC++R ++ A L++  E P+E+GG
Sbjct: 138 SYRGRMTAKICWQVNDGPVEVQMRDCGLLPIMVRSARCNVRGMSSADLVKHHEEPEEFGG 197

Query: 200 YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHF 259
           YFI+ G+E+L+R LI  RR+H I++ R ++ NRG  ++   V IR V+ D++   N LH+
Sbjct: 198 YFIINGNERLIRYLILPRRHHVISLVRPSFVNRGPSYTPYAVQIRCVRPDQTGVTNTLHY 257

Query: 260 VTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG---QIFKEKLQYD------ 310
           ++NGSA   FS RK   ++ +M  L  + + +  D ++F G   Q +++    D      
Sbjct: 258 LSNGSAMLRFSWRKQEYVIPIMLIL--KALVSASDKEIFEGVMMQDYEDTFLSDRVELLL 315

Query: 311 --------------LRHLNE--------------VEICDYMLTNCILPHLDDYWDKFLCL 342
                         L++L +                I  +++   +L HL +  DKF  L
Sbjct: 316 RSFKMYSLYTGDQCLQYLGDKFRVVVNMPEDWTNQAIGVWLINKVVLVHLQNPRDKFRML 375

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--------KSGTSAVLKE 394
             M  KLF +V     +D+ DS   QE++  G+LY  ++K+         + G +  ++ 
Sbjct: 376 LFMLRKLFALVSKSCSVDNPDSPQHQEVLLPGTLYGMIIKERLEEALNSFREGIALDVRN 435

Query: 395 SDIYAAF-----------RAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
           S+    F           R S  I + M+NFLATGN+ +   + L L QASGF I+AE +
Sbjct: 436 SNPAVDFFDKRYIKKVLSRTSYDIGAKMSNFLATGNLVS--PTGLDLQQASGFTIVAEKL 493

Query: 443 NRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           N MRY+SHFR++HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL+  C+I
Sbjct: 494 NWMRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRTCRI 553

Query: 503 SEYIPSKVLAQIPSVLVSLGML-PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPK 561
                   +A +P++L + GM     P +     + L V LDGR++G+    +   L   
Sbjct: 554 --VTSPLAVAHLPALLAAHGMTQAFAPSVDG--RRNLCVQLDGRLIGWAPSAVCKQLATS 609

Query: 562 LRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGT 620
           LR+ K  G+  +P  LEI ++  P    G YPGLYLF+   RM+RPV  LA G  + +G+
Sbjct: 610 LRIWKTEGKHSVPLDLEIGFV--PVSKGGQYPGLYLFSSRSRMMRPVKYLANGRDDQVGS 667

Query: 621 FEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
           FEQV+MDI  T  E   G++TH E + T+FLS LANL P  D NQSPRN+YQCQMGKQTM
Sbjct: 668 FEQVYMDIACTPAEIEDGVSTHVEHAPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTM 727

Query: 681 GTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDA 740
           GTP    +++   KLYRLQT  +P  RP  ++T  MD+FP GTNAIVAVISYTGYDMEDA
Sbjct: 728 GTPATALQHRTDNKLYRLQTGQTPVVRPALHNTYGMDSFPNGTNAIVAVISYTGYDMEDA 787

Query: 741 MILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA---QIFFGVVHY 797
           MILNKS++ERGF +G ++K+  ++L+              + GS  Q     + FGV   
Sbjct: 788 MILNKSAHERGFGYGTVYKAYTVDLQE-------------LTGSRRQTGPPTLHFGVGPE 834

Query: 798 QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYV 857
            R+                 P   A    +  DGL  VG++LN  DP+ +Y  ++  R  
Sbjct: 835 IRMEE--------------GPNQHAAAKLVDADGLPIVGSRLNPGDPIAAYVDDTTGRTK 880

Query: 858 TCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSV 917
             +Y G E   V+ VR+    ++ G        I  RI R P +GDKF+SR GQKG+CS 
Sbjct: 881 FVKYKGDEVAYVDTVRLLG--SDAGDQELQKINITLRITRAPVIGDKFSSRHGQKGVCSQ 938

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KWPA D+PFT+SG+ PD++ NPH FPSRMTIG L
Sbjct: 939 KWPAIDMPFTESGMQPDVIINPHAFPSRMTIGML 972



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 38/57 (66%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            + +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 1010 VAAGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTIGPVDPVTR 1066


>gi|119593999|gb|EAW73593.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_d [Homo
           sapiens]
          Length = 837

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 348/865 (40%), Positives = 485/865 (56%), Gaps = 98/865 (11%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 803

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSY 848
             KL  DGL ++GAKL   DP YSY
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSY 828


>gi|268561614|ref|XP_002646487.1| Hypothetical protein CBG19469 [Caenorhabditis briggsae]
          Length = 1131

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 347/946 (36%), Positives = 510/946 (53%), Gaps = 108/946 (11%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY-GKTLKLNIVKAAISEPKVPAGP-VGIH 125
           + + H++SFDF++ +G  LA + I   +F +  G  + +    A + +P + +G  +   
Sbjct: 5   IASYHVSSFDFLVTDGCQLAAQAIPAEKFRLKNGDNVTMKFTSAQLHKPTLDSGAKLTSD 64

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
               YP E RQ    Y+G   V +    +          +G+VPIML+S+ CHLR ++  
Sbjct: 65  TLPLYPAECRQRGMTYAGNLKVNIDVHVNETRLDIIETILGKVPIMLRSEGCHLRGMSRK 124

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           QL+  GE P E GGYFIV G EK++RLLI NRRN PIAI R  +K +G LFS+ GV +RS
Sbjct: 125 QLVAAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRS 184

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKSM------------------------------ 275
           VK + +A    +H++  G+ +     R+ +                              
Sbjct: 185 VKENHTAVMMTMHYLDTGTMQLALQFRREIFYIPMMYIVKALTNKNDAVISAEFKKGRPK 244

Query: 276 ------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-NEVEICDYMLTNCI 328
                 C+L M+    EEGI  Q  +    G  F+  +   +     +++   ++L  C+
Sbjct: 245 DQFFASCILNMLAQCQEEGILDQESAITAIGSRFRVAVSDRVGPWEKDIDAGRFILKECV 304

Query: 329 LPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGT 388
           L HL+D  +KF  L++M  KL  +V+G    ++ D+   QE    G + L +L++     
Sbjct: 305 LIHLEDDEEKFYTLAYMAQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENI 364

Query: 389 SAVLKESDIYAA----FRASS--------------IESAMTNFLATGNVSAGKNSTLQLM 430
             +++    + +    FR +S              I   M  FLATGN+       L L 
Sbjct: 365 LGMVRRKIEFMSARQDFRLTSAQILKALGNHNGGEITRGMAYFLATGNLVT--RVGLALQ 422

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SGF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG PC
Sbjct: 423 QESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPC 482

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM-VMLDGRIVGY 549
           GLLNH+T +C+I  ++     + + S+L  LGM     V  +   + L  V++DG+ +GY
Sbjct: 483 GLLNHVTASCEIVTHLTDN--SNVTSMLAELGMYTQKTVSMAPSGEELYPVLMDGKFIGY 540

Query: 550 ILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGL---YPGLYLFTGPGRMLR 605
           +    A S+   LR  K+  + +IP + EI  ++R      +   YPG+Y+ + PGR++R
Sbjct: 541 VPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQTQYPGIYILSDPGRLIR 600

Query: 606 PVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
           PV NLA  ++E IGTFEQV++ + +  +EA PG+T H+EL  +   S   NLIP PD NQ
Sbjct: 601 PVRNLALDSVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ 660

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRN+YQCQMGKQTMGT    W  +   K+YRLQ P  P  +   Y+   MD +P+GTNA
Sbjct: 661 SPRNVYQCQMGKQTMGTAVHAWHTRADNKMYRLQFPQQPMLKLEAYEKYQMDEYPLGTNA 720

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
            VAVISYTGYDMEDAM +NK+SY+RGFAHG + K   IEL                    
Sbjct: 721 CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERIEL-------------------- 760

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM 845
                             V+++ + K  F ++P  +     +GPDGL   G +    +  
Sbjct: 761 ------------------VTER-EKKTIFHKNPREEI--KTVGPDGLPIPGRRYFMDEVY 799

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
           Y  +      + T ++   E     +VR+    +E        A I +RI+RNP +GDKF
Sbjct: 800 YVTFNMETGDFRTHKFHYAEPAYCGMVRIVEN-SEAPGGGAQHALIQWRIERNPIIGDKF 858

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ASR GQKGI S  WP E LPF+++G+VPDI+FNPHGFPSRMTIG +
Sbjct: 859 ASRHGQKGINSFLWPTESLPFSETGMVPDIIFNPHGFPSRMTIGMM 904



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 42/53 (79%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           ++GYNYYG ET YSGVDG  M+ QIFFG+V+YQRLRHM++DK+Q +     DP
Sbjct: 943 KAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDP 995


>gi|308485788|ref|XP_003105092.1| hypothetical protein CRE_20709 [Caenorhabditis remanei]
 gi|308257037|gb|EFP00990.1| hypothetical protein CRE_20709 [Caenorhabditis remanei]
          Length = 1127

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 351/946 (37%), Positives = 514/946 (54%), Gaps = 109/946 (11%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY-GKTLKLNIVKAAISEPKVPAGP-VGIH 125
           + + H++SFDF++ EG   A + +   +F +  G  + +    A + +P +  G  +   
Sbjct: 5   IASYHVSSFDFLVTEGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDNGAKLTSD 64

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
               YP E RQ    Y+G   V +    +G         +G+VPIML+S+ C+LR ++  
Sbjct: 65  TLPLYPAECRQRGLTYAGNLKVGIDVHVNGTRLDIIETILGKVPIMLRSEGCNLRGMSRK 124

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           +L+  GE P E GGYFIV G EK++RLLI NRRN PIAI R  +K +G LFS+ GV +RS
Sbjct: 125 ELVAAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRS 184

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRK-------------------------------- 273
           VK + +A    LH++  G+ +     R+                                
Sbjct: 185 VKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYVVKALTNKNDAVIMAGFKRGRNQ 244

Query: 274 ----SMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-NEVEICDYMLTNCI 328
               S C+L M+    EEGI  Q  +    G  F+  +   +    +++E   +++  C+
Sbjct: 245 DQFFSSCVLNMLAQCQEEGILHQESAIRAIGSRFRVAIADRIAPWEDDLEAGKFIIRECV 304

Query: 329 LPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGT 388
           L HLD   +KF  L++M  KL  +++G    ++ D+   QE    G + L +L++     
Sbjct: 305 LVHLDSDEEKFYMLAYMAQKLIALIKGECAPETPDNPQFQEASVSGHILLLILRERMENI 364

Query: 389 SAVLKESDIYAAFR------ASSIESAMTN------------FLATGNVSAGKNSTLQLM 430
             V++    + + R      +S+I  A+ N            FLATGN+       L L 
Sbjct: 365 IGVVRRKLEFMSSRKDFILTSSAILKALGNHTGGEITRGMAYFLATGNLVT--RVGLALQ 422

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SGF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG PC
Sbjct: 423 QESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPC 482

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM-VMLDGRIVGY 549
           GLLNH+T +C+I  ++     + IPS+L  LGM     V  + P + L  V++DGR +GY
Sbjct: 483 GLLNHVTASCRIVTHLSDN--SSIPSMLAELGMYTQKTVSLAPPGEELYPVLMDGRYIGY 540

Query: 550 ILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGL---YPGLYLFTGPGRMLR 605
           +    A S+   LR  K+  + +IP + EI  ++R      +   YPG+Y+ T PGR++R
Sbjct: 541 VPIAKAASIERYLRCAKVANDARIPYTTEIALVRRSTDIKNIQTQYPGIYILTDPGRLIR 600

Query: 606 PVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
           PV NLA  ++E IGTFEQV++ + +  +EA PG+T H+EL  +   S   NLIP PD NQ
Sbjct: 601 PVRNLAMDSVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ 660

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRN+YQCQMGKQTMGT   +W  +   K+YRLQ P  P  +   Y+  +MD +P+GTNA
Sbjct: 661 SPRNVYQCQMGKQTMGTAVHSWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNA 720

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
            VAVISYTGYDMEDAM +NK+SY+RGFAHG + K   I L                    
Sbjct: 721 CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL-------------------- 760

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM 845
                             V+D+ + K  F ++P        +  DGL   G +    +  
Sbjct: 761 ------------------VTDR-ERKTIFYKNPREDM--KTVSADGLPIPGRRYFLDEVY 799

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
           Y  +      + + ++   E     +VR+    +E GS   + A I +RI+RNP +GDKF
Sbjct: 800 YVTFNMETGDFRSHKFHYAEPAYCGMVRIVEQ-SESGSGAQH-ALIQWRIERNPIIGDKF 857

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ASR GQKGI S  WP E LPF+++G+VPDI+FNPHGFPSRMTIG +
Sbjct: 858 ASRHGQKGINSFLWPIESLPFSETGMVPDIIFNPHGFPSRMTIGMM 903



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 42/53 (79%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           ++GYNYYG ET YSGVDG  M+ QIFFG+V+YQRLRHM++DK+Q +     DP
Sbjct: 942 KAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDP 994


>gi|390339123|ref|XP_790504.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
            [Strongylocentrotus purpuratus]
          Length = 1218

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 361/992 (36%), Positives = 524/992 (52%), Gaps = 136/992 (13%)

Query: 71   PHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYY 130
            PHI SF++MLD+GL  AV +I P+EF +  + + L+   A++  P V  G +     K Y
Sbjct: 56   PHIESFNYMLDDGLAQAVRNITPLEFLLDDERISLSYEDASVGVPTVARGNLFASTLKVY 115

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P+E+RQ  + Y  P    V W       G+  + +G++P+++K K C+L NL+P++L++R
Sbjct: 116  PSESRQRGTTYQAPLQARVHWQSGNGDSGSVMRPLGQIPLLVKCKNCNLYNLSPSELVKR 175

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E   E GGYFI  G EK++R+L+  RRN P+AI R+ WK RG  F++ GV +R V+ D+
Sbjct: 176  KEESCEMGGYFIANGIEKVIRMLVMPRRNFPMAINRSKWKTRGKGFTEFGVQMRCVRNDQ 235

Query: 251  SATNNVLHFVTNGSARFMFSHRKSM----------------------------------- 275
            S     LH++T GS    F++ K +                                   
Sbjct: 236  SIVTITLHYLTTGSIVVSFAYNKEIFFLPLLLVLRALVDTSDQHVYDELVKGKEKDTFLI 295

Query: 276  -CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDD 334
             C+ GM++    + + +Q  +    G+ F+ KL     H N V+   ++L  CI  HLD 
Sbjct: 296  GCVTGMLRQTQTQNLSSQEQALEHIGERFRIKLSVPPWHTN-VQTAKFLLQQCICVHLDS 354

Query: 335  YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG-----TS 389
              DKF  L+ M  KLF   QG    ++ DS M QE++  G LYL +LK++  G       
Sbjct: 355  NQDKFNTLAFMARKLFAFNQGECAAENADSPMNQEVLLAGHLYLMVLKEKLEGWLVNLRY 414

Query: 390  AVLKES---------DIYAAFRASS----IESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
            A+ K++         D+     AS+    +   M   +ATGN+++   + L LMQ SG  
Sbjct: 415  AIEKQAKKSRRFVLNDVSLNTAASTGPGDLTRKMEYLIATGNLAS--KTGLGLMQTSGMT 472

Query: 437  IMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            ++A+ +N MR++SHFR +HRGS+F EMR++  R+L  +AWGF+CPVHTPDG PCGL+NHL
Sbjct: 473  VVADKLNFMRFLSHFRCIHRGSFFAEMRTTSVRKLLPEAWGFLCPVHTPDGAPCGLMNHL 532

Query: 497  TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIAT 556
            T  CQ+    P  +   +   L +LGM+PL   +         V+LDGR++GY+   IAT
Sbjct: 533  TALCQVVNTQP--LTLPLVKTLYALGMIPLDAPLPCPVSGCYEVVLDGRVLGYVPQDIAT 590

Query: 557  SLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNI 615
             L  +L++LK+ G+  +  + EIV +    KG G YPGLY+FT P R+ RPV NLA    
Sbjct: 591  QLTSRLKILKVKGQSGVTPTTEIVLVPVTGKG-GQYPGLYIFTTPTRLYRPVRNLALQET 649

Query: 616  EWIGTFEQVFMDICITMKEAYPG-----ITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
            E+IGTFEQV+MDI +T  E +       ITTH EL+++  LS  A+L P  D NQSPRNM
Sbjct: 650  EYIGTFEQVYMDIAVTPSEIHEKVCRTLITTHLELNESSILSVSASLTPFSDFNQSPRNM 709

Query: 671  YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
            YQCQMGKQTMG P     ++   K+Y+LQTP +P  RP  YD  D D++P+GTNA+VAVI
Sbjct: 710  YQCQMGKQTMGFPSHTLPFRIDHKMYKLQTPQTPMVRPHAYDKYDFDDYPLGTNAVVAVI 769

Query: 731  SYT----GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
            SYT     Y   +  +++            + +  FI+L    N    +           
Sbjct: 770  SYTTKIEKYKGSEVAVVDNVKVTGNDLGNQVCQRAFIQLRIQRNPIIGDK---------- 819

Query: 787  QAQIFFGVVHYQRLRHMVSDKWQTKD------------------YFGRDPANKALEDKLG 828
                 F   H Q  + + S +W T+D                  +  R      +E   G
Sbjct: 820  -----FSSRHGQ--KGVCSQRWPTEDMPFTESGMTPDILFNPHGFPSRMTIGMMIESMAG 872

Query: 829  PD----GLVYVGA--KLNERDPMYSYWKE----------SENRYVTCRYS---------- 862
                  GL +       +E  P   Y+ +            N +  CRY+          
Sbjct: 873  KSASLHGLCHDATPFTFSEEQPAVDYFGKLLTAGYFHHSYVNPHFKCRYTRLDSGQTKIE 932

Query: 863  ---GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
               G E   V+ V+++    + G+     A+I  RIQRNP +GDKF+SR GQKG+CS +W
Sbjct: 933  KYKGSEVAVVDNVKVTG--NDLGNQVCQRAFIQLRIQRNPIIGDKFSSRHGQKGVCSQRW 990

Query: 920  PAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            P ED+PFT+SG+ PDI+FNPHGFPSRMTIG +
Sbjct: 991  PTEDMPFTESGMTPDILFNPHGFPSRMTIGMM 1022



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYGTE MYSG  G  ++A IF GVV+YQRLRHMVSDK+Q +
Sbjct: 1063 GYNYYGTERMYSGTSGVELEADIFIGVVYYQRLRHMVSDKFQVR 1106


>gi|320580927|gb|EFW95149.1| DNA-directed RNA polymerase I [Ogataea parapolymorpha DL-1]
          Length = 1166

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 359/971 (36%), Positives = 523/971 (53%), Gaps = 114/971 (11%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIAPIE-FEI---- 98
           +  F  PP  ++ F +   A  PH+ SF+  L EG     L+LAV+DI     F+     
Sbjct: 12  EHRFKNPPKDRSAFQMLYDAVRPHVGSFN-ALTEGPDGGLLNLAVKDIGTKTIFDTNDAT 70

Query: 99  -YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  L++ +    I++P+VP+          YP E R+  + Y     + V WS +   
Sbjct: 71  GSGNKLRIRVDSVQIAKPQVPSTDKLSVVRNTYPAECRERMTTYRARLLLKVCWSINDGE 130

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +E G++PIML+S RCHL NL+P QL++  E  DE GGYFIV G EKL+R+LI  R
Sbjct: 131 EISEVREAGQIPIMLQSNRCHLENLSPDQLVKLREESDELGGYFIVNGIEKLIRMLIVQR 190

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+AI R ++ NRG  +S  GV IRSV+ D+++  NVLH++ +G+  F FS RK+  L
Sbjct: 191 RNHPMAIIRPSFANRGTSYSHFGVQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYL 250

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR----------------- 312
           + ++  L  + +   +D ++F G +          ++L+  LR                 
Sbjct: 251 IPVVMIL--KALIETNDREIFDGVVGADTGNSFLTDRLELLLRTYKNYNLYSQKETLAYL 308

Query: 313 ------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                        ++++ + + ++   +L HL++  DKF  L  M  KL+ +V G    D
Sbjct: 309 GDKFRVVFGATPDMSDISVGEEVIKRIVLVHLENNEDKFRMLLFMIRKLYSLVAGDCSPD 368

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------------- 404
           + D+   QEI+ GG LY  +LK++       ++   +SDI      +             
Sbjct: 369 NPDATQHQEILLGGFLYGMILKEKIEEYLQNIRLQVQSDINRGIAVNFSDRKYMSRVFLR 428

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 429 INENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFA 486

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+    +  + ++P +L  L
Sbjct: 487 QLKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCRIT--TKASDVTKVPKLLHKL 544

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVY 580
           G+ P    I         V LDGRI+G+   +    +   LR  K+ G   IP  LEI Y
Sbjct: 545 GVSPTASAINISGPNVCCVQLDGRIIGWCSHKQGKIVADTLRFWKVEGHHDIPLDLEIGY 604

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGLYLF G  RM+RPV  L     + +G FEQVFM++ +   E    I 
Sbjct: 605 V--PPSSGGQYPGLYLFAGASRMVRPVRYLPLDKEDIVGPFEQVFMNVAVIPSEIENNIH 662

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQ+
Sbjct: 663 THVEFAPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQS 722

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K 
Sbjct: 723 GQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGVVYKV 782

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L          T + G                                 FG D   
Sbjct: 783 EKVDLSLNRKRGDPITQHFG---------------------------------FGSDEWP 809

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
           ++ ++KL  DGL ++G  + E DP+ +Y+ +   +     Y   E   +E V++     +
Sbjct: 810 ESWKEKLDNDGLPHIGVHVEEGDPICAYYDDILGKTKVKTYHSSEPAFIEEVKLLG--DD 867

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
            G+       I YRI R P +GDKF+SR GQKG+CS KWP  D+PF+++G+ PD++ NPH
Sbjct: 868 NGTSEFQTLSIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFSETGIQPDVIINPH 927

Query: 941 GFPSRMTIGFL 951
            FPSRMTIG  
Sbjct: 928 AFPSRMTIGMF 938



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNY+G E +YSGV G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 978  AGYNYHGNEPLYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVR 1022


>gi|393216038|gb|EJD01529.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Fomitiporia mediterranea MF3/22]
          Length = 1230

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 372/986 (37%), Positives = 541/986 (54%), Gaps = 120/986 (12%)

Query: 51  DKNFGKPPDKQNE--FLLTLGAPHIASFDFMLDEG------------LDLAVEDIA-PIE 95
           +  F  PP K +    L  L APH+ SF+ + D+             L LAV+DI   + 
Sbjct: 15  EARFRNPPKKGHSVPILNELVAPHLESFNALFDDSGLPTGDGDGSGLLSLAVKDIGEKVV 74

Query: 96  FEIYGKT-----------LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGP 144
           F+  G+            + + I + +I  P VP         K YP EAR+  + Y G 
Sbjct: 75  FDYSGREDEQGNRRLGNRMSMWIEQVSIGRPMVPERDKLALERKVYPAEARERLTSYRGR 134

Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
             + + W   GK   +  K+ G VPIM++S RC++RNL+ ++L+ + E P+E+GGYFI+ 
Sbjct: 135 MTIKLCWKVHGKEERSIVKDCGLVPIMVRSVRCNIRNLSSSELVAKHEEPEEFGGYFIIN 194

Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS 264
           G+E+L+R LI +RR+H IA+ R +++ RG  ++   V IR V+ D++A  N LH+++NG+
Sbjct: 195 GNERLIRYLIVSRRHHVIALSRPSFQKRGPSYTPYAVQIRCVRPDQTAVTNSLHYLSNGN 254

Query: 265 ARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--------KLQYDLRHL-- 314
           A F FS RK   ++ +M  L  + +    D ++F G I ++        +++  LR    
Sbjct: 255 AMFRFSWRKQEYVIPVMLIL--KALVGASDKEIFEGIIMQDYENTFLTDRVELLLRSFKN 312

Query: 315 ---------------------------NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTC 347
                                      N   +  +++   IL HL+D  DKF  L  M  
Sbjct: 313 YKLYTGEQCLEFLGDKFRVVLGQPEDWNNTALGVWLVRKFILVHLEDPRDKFRMLLFMLR 372

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAV 391
           KL+  V      D+ DS   QE++  G LY  ++K+                 + G  AV
Sbjct: 373 KLYSSVNSSSCSDNPDSPQHQEVLLPGFLYGMIIKERMEECLNALRAQIAHDVRRGDKAV 432

Query: 392 LKESDIY---AAFRAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
               + Y   A  R +  I + + NFLATGN+ +   + L L QA+GF I+AE +N  RY
Sbjct: 433 DFFDEKYFMKAVSRVNFDIGARLANFLATGNLVS--PTGLDLQQAAGFTIVAEKLNWYRY 490

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL+ +C+I     
Sbjct: 491 ISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRSCRI--VTA 548

Query: 508 SKVLAQIPSVLVSLGMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
              +A + ++L+S GM  +  P I     + + V LDGR++G+    +   L   LR+ K
Sbjct: 549 PLAVAHLTNLLLSNGMTSVHAPSINGKRHRNVAVQLDGRMIGWASPALVKQLATSLRVWK 608

Query: 567 IVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
             G   +P  LEI  +  P    G YPGLYLF+   RM+RPV  +  G  + IG+FEQV+
Sbjct: 609 TEGRYNVPLDLEIGLV--PISQGGQYPGLYLFSSRSRMMRPVKYVLNGKDDQIGSFEQVY 666

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           MDI +  +E   G++TH E S T+FLS LANL P  D NQSPRN+YQCQMGKQTMGTP  
Sbjct: 667 MDIAVKPEEIESGVSTHVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPST 726

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             +++   KLYRLQT  +P  RP  ++T  MD+FP GTNA+VAVISYTGYDMEDAMILNK
Sbjct: 727 AIKHRTDNKLYRLQTGQTPIVRPALHNTYSMDSFPNGTNAVVAVISYTGYDMEDAMILNK 786

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGFA+G ++KS  I+L+  +          G   S     + FG     R R    
Sbjct: 787 SAHERGFAYGTVYKSQTIDLKDMH----------GASKSTTAPTLHFGFGRDIRTR---- 832

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                    G +P +  LE  L  DGL +VG K+   D + +Y  ++  R    +Y   E
Sbjct: 833 ---------GNNP-HPCLE-ILDFDGLPHVGKKVKFNDFIAAYVDDTTGRTRFVKYKNDE 881

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              ++ VR+    ++ G        I +RI R+P +GDKF+SR GQKG+CS KWP  D+P
Sbjct: 882 AGIIDEVRLLG--SDAGDTELQKINITFRITRSPVIGDKFSSRHGQKGVCSQKWPMIDMP 939

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F++SG+ PD++ NPH FPSRMTIG L
Sbjct: 940 FSESGIQPDVIINPHAFPSRMTIGML 965



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 36/54 (66%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
            L +GYNYYG E MYSG+ G    A I+ GVV YQRLRHMV DK+Q +     DP
Sbjct: 1003 LAAGYNYYGNEPMYSGITGQEFAADIYLGVVFYQRLRHMVLDKFQVRTTGPVDP 1056


>gi|328853401|gb|EGG02540.1| hypothetical protein MELLADRAFT_49804 [Melampsora larici-populina
           98AG31]
          Length = 1214

 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 371/989 (37%), Positives = 528/989 (53%), Gaps = 131/989 (13%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEG------LDLAVEDI 91
           Q  L   + +N + +  G P       +  L APHI SF+ + +        L L V DI
Sbjct: 33  QTLLREETFRNPSKRATGNPA------IHKLVAPHIESFNTLFEAPDGSPGLLTLGVADI 86

Query: 92  A--------PIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSG 143
                    P   +     L+  IV+  +S P   A   G   ++ YP+EAR+  + Y+G
Sbjct: 87  PSKVVFDSPPENSDTPRNRLEFKIVEVLVSNPM--AIEKGTGRDRIYPSEARERMATYAG 144

Query: 144 PFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIV 203
             +  V+WS +        +E G++PIMLKS++C+L+ +TP QLI+  E  +E GGYF+V
Sbjct: 145 KISAKVSWSLNNGPPNHEHREFGQLPIMLKSEKCNLKQMTPRQLIDHHEESEEMGGYFLV 204

Query: 204 GGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNG 263
            G+E+L+R LI  RRNH IA+ R ++ NRG  ++     +R V+ D+S+    LH+++NG
Sbjct: 205 NGNERLIRFLIVPRRNHAIALIRPSFCNRGNFYTPFACQMRCVRPDQSSQTVTLHYLSNG 264

Query: 264 SARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG---QIFKEKLQYD-----LR--- 312
           +  F FS RK+  L+ ++  L  + +    D ++F G     F +  + D     LR   
Sbjct: 265 NVTFRFSWRKNEYLIPVVMLL--KALIGASDQEIFAGLAQNAFDDTFRTDRIELLLRSFK 322

Query: 313 --HLNEVEIC------------------------DYMLTNCILPHLDDYWDKFLCLSHMT 346
             HL    +C                         ++L   +L HL++   K+  L  M 
Sbjct: 323 NYHLPTSALCLHFLGSKFRIVLNCPDDWSDERVGRFLLDRVVLVHLNNATSKYRLLLFMI 382

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--------KSGTSAVLKESDIY 398
            KL+ +V G    D+ DS   QEI+  G L   +LK+         ++  ++ ++     
Sbjct: 383 QKLYALVGGECCADNPDSPQHQEILMPGHLLSSILKERFEEYIGGIRNQMASDVRRGVAS 442

Query: 399 AAFRASS-IESAM-----------TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
           A FR    ++  M           T FLATGN+ +   + L L Q SGF ++AE +N  R
Sbjct: 443 ANFRDPKYVQKTMARVDCDAGKRITYFLATGNLVS--PTGLDLQQMSGFTLIAEKLNFYR 500

Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
           Y+SHFR VHRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNH    CQI    
Sbjct: 501 YISHFRCVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHFAHQCQI--LS 558

Query: 507 PSKVLAQIPSVLVSLGM-LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
                + +P++L SLGM  P    +    +  + V LDG ++G+    +   +   LR+ 
Sbjct: 559 SPSPSSHVPALLTSLGMSQPFDSAVDV--KNYVCVQLDGEVIGWASLSLCFKMATALRLW 616

Query: 566 KIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV 624
           K  G EKIP  LE+ ++ R   G   YPGL+LF+ P RM+RPV  ++ G  E IG FEQV
Sbjct: 617 KTEGLEKIPPGLEVGFVPRVTGGQ--YPGLFLFSTPARMMRPVQLISNGKTELIGPFEQV 674

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
           ++DI  T  E   GI+TH E+S T  LS LANL P  D NQSPRNMYQCQM KQTMGTP 
Sbjct: 675 YLDIACTESEIEKGISTHVEISPTHILSLLANLTPFSDFNQSPRNMYQCQMSKQTMGTPS 734

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
             + ++   KLYRLQT  +P  RP  +D   MD+FP GTNA+VAVISYTGYDMEDAMILN
Sbjct: 735 SAFNHRTDNKLYRLQTGQTPIVRPALHDHYHMDHFPNGTNAVVAVISYTGYDMEDAMILN 794

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           KS +ERGF HG I+KS  ++L+               D     ++  FG+          
Sbjct: 795 KSGHERGFGHGTIYKSQIVDLQP--------------DRGRGSSERHFGL---------- 830

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK 864
                     G D   K +   LG DG+  +G++L   DP+ +Y      +    +Y G 
Sbjct: 831 ----------GDDHKLKDMAQHLGADGIAMIGSRLKRGDPLCAYVDRVTGKGGWEKYKGD 880

Query: 865 EEMCVEVVRMSSGFTEGGSVTPNCAYIGY--RIQRNPTVGDKFASRAGQKGICSVKWPAE 922
           EE  VE +R+        S T  C  I +  RI R+P +GDKF+SR GQKG+CS KWPA 
Sbjct: 881 EEAFVEEIRLIG----NDSSTTECTKIHFKLRIPRSPVIGDKFSSRHGQKGVCSQKWPAV 936

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PFT+SG+ PD++ NPH FPSRMTIG  
Sbjct: 937 DMPFTESGMQPDVIINPHAFPSRMTIGMF 965



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 35/47 (74%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L SG+NY+G E MYSG+ G    A I+ G+V+YQRLRHMV DKWQ +
Sbjct: 1003 LASGFNYHGNEPMYSGITGEEFVADIYIGLVYYQRLRHMVGDKWQVR 1049


>gi|50290705|ref|XP_447785.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527096|emb|CAG60734.1| unnamed protein product [Candida glabrata]
          Length = 1202

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 378/1009 (37%), Positives = 541/1009 (53%), Gaps = 138/1009 (13%)

Query: 30  KVLKMILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG---- 83
           KV+K   N  T    +L+   +  F  PP  ++ + L   A  PH+ SF+  L EG    
Sbjct: 3   KVIKPPSNARTAHFRTLER--ENRFKNPPKDKSAYPLLQEAVQPHVGSFN-ALTEGPDGG 59

Query: 84  -LDLAVEDIAPI-----------EFEIY-GKTLKLNIVKAAISEPKVPAGPVGIHFNKYY 130
            L  AVEDI              E   Y G  L +++ + +I++P    G +G      Y
Sbjct: 60  LLQRAVEDIGEKVIFDGKSDGSDEISDYLGNKLSISVEQVSIAKPTANDGVMGAAERPVY 119

Query: 131 PTEARQTRSVYSGPFNVTVAWSW-DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
           P+EARQ  + Y G   + + WS  DG+   +  ++ G +PIML+S RCHL  ++P +L++
Sbjct: 120 PSEARQRLTSYRGKILLKLKWSVNDGENVFSEVRDCGGLPIMLQSNRCHLNKMSPHELVQ 179

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
             E  DE GGYFI+ G EKL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV+ D
Sbjct: 180 HKEESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPD 239

Query: 250 ESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI------- 302
           +++  NVLH++ +G   F FS RK+  L+ ++  +  + +    D ++F G I       
Sbjct: 240 QTSQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMIM--KALVDTSDREIFDGIIGSNTNNS 297

Query: 303 -FKEKLQYDLRHL--------NEVEICDYM-----------------------LTNCILP 330
              ++L+  LR          N  ++  Y+                       L   +L 
Sbjct: 298 FLTDRLELLLRGFKKRYPQLKNRTQVLQYLGDKFRLVFQASPDKSDYEVGQEVLNRIVLV 357

Query: 331 HL--DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS-- 386
           HL  +   DKF  L  M  KL+ +V G    D+ D+   QE++ GG LY  +LK++    
Sbjct: 358 HLGSNGNMDKFRMLLFMVRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMILKEKIDEY 417

Query: 387 --GTSAVLKESDIYAAFRAS----------------SIESAMTNFLATGNVSAGKNSTLQ 428
             G  A ++ +DI      +                +I S M  FL+TGN+ +   S L 
Sbjct: 418 LQGIVAQVR-TDINRGVAINFNEKKYMSRVLMRVNDNIGSKMQYFLSTGNLVS--QSGLD 474

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ ++AE IN  R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 475 LQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 534

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNH    C+IS       ++++P +L SLG+ P +    + P     V LDG+I+G
Sbjct: 535 PCGLLNHFAHKCRIS--TTQSDVSKVPELLYSLGVTPASHTFAAGPS-LCCVQLDGKIIG 591

Query: 549 YILDQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           +   +    +   LR  K+ GE   +PK LEI Y+  P    G YPGLY+F G  RM+RP
Sbjct: 592 WTSHEQGRVIADTLRFWKVEGETPGLPKDLEIGYV--PPSSKGQYPGLYIFGGHSRMMRP 649

Query: 607 VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           V  L     + +G FEQV+M+I +T +E    I TH E S T+ LS LANL P  D NQS
Sbjct: 650 VRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNIHTHVEFSPTNILSILANLTPFSDFNQS 709

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRNMYQCQMGKQTMGTP +   ++   KLYRLQT  +P  +   YD   MDNFP GTNA+
Sbjct: 710 PRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAV 769

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K   ++L    +     T + G      
Sbjct: 770 VAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVDLSLNRSRGDPVTQHFG------ 823

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY 846
                                      FG D   K   DKL  DGL Y+G  + E DP+ 
Sbjct: 824 ---------------------------FGTDEWPKEWLDKLDEDGLPYIGTYVEEGDPIC 856

Query: 847 SYWKESENRYVTCRYSGKEEMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
           +Y+ ++  +     Y   E   +E V +    S+ F E  +V+     I YRI+R P +G
Sbjct: 857 AYFDDTIGKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIG 911

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG+CS KWP  D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 912 DKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDVIINPHAFPSRMTIGMF 960



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++  I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 998  LKAGYNYHGNEPMYSGATGEELRCDIYIGVVYYQRLRHMVNDKFQVR 1044


>gi|146422181|ref|XP_001487032.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1166

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 354/974 (36%), Positives = 519/974 (53%), Gaps = 122/974 (12%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEGLDLA----VEDIAPI------EFEI 98
           +  F  PP  ++ + L   A  PHI SF+ + +          V+DI         + + 
Sbjct: 11  ESRFRNPPKDKSAYPLLADAVSPHIGSFNALTEGPGGGLLNLGVQDIGTKTIFDSNDTDR 70

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            G  L + +    +++P VPA        + YP+E R+  + Y     + V WS +    
Sbjct: 71  LGNKLSIRVESVQLTKPAVPANDKLSMNRRTYPSECRERMTSYRSRLMLKVTWSVNDGEE 130

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
            +  +E G++PIMLKS RCHL  L+P +L+++ E  DE GGYFIV G EKL+R+LI  RR
Sbjct: 131 VSEVREAGQIPIMLKSNRCHLEKLSPDELVKQKEESDELGGYFIVNGIEKLIRMLIVQRR 190

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           NHP+AI R ++ NRG  ++  G+ IR V+ D+++  NVLH++ +G+  F FS RK+  L+
Sbjct: 191 NHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYLV 250

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR------------------ 312
            +M  +  + +    D ++F G +          ++L+  LR                  
Sbjct: 251 PVMMIM--KALVETSDREIFDGIVGADTSNSFLTDRLELLLRSYKKYNLYSKQETLAYLG 308

Query: 313 -----------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
                       ++++E+   +L   +L HL+D  DKF  L  M  KL+ +V G    D+
Sbjct: 309 DKFRVVFGATPDVSDIEVGQEVLKRIVLVHLEDPKDKFRMLLFMIRKLYTLVAGDCSPDN 368

Query: 362 EDSIMLQEIMTGGSLY----------------LQLLKKEKSGTSAVLKE----SDIYAAF 401
            D+   QE++ GG LY                LQ+L     G +    +    S ++   
Sbjct: 369 PDATQHQEVLLGGFLYGMIIKEKIEEYLQSIRLQILSDINRGVAVNFNDRRYMSRVFLRI 428

Query: 402 RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 429 N-ENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFA 485

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+    +  ++ +P+ L  L
Sbjct: 486 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIA--TEASDVSTVPAALAQL 543

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVY 580
           G+ P      +       + LDG++VG++  +    +   LR  K+ G   +P  LEI Y
Sbjct: 544 GVSPAHAF--AAGPNLCCIQLDGKVVGWVTHEHGKIVADTLRFWKVEGTHGLPLDLEIGY 601

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGLY+F G  RM+RP   L     + +G FEQV+MDI +T  E    + 
Sbjct: 602 V--PPSNQGQYPGLYIFGGHSRMMRPTKYLPLDKQDIVGPFEQVYMDIAVTPPEIENNVH 659

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQT
Sbjct: 660 THVEFSPTNVLSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALAHRSDNKLYRLQT 719

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K 
Sbjct: 720 GQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKV 779

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L          T + G                                 FG D   
Sbjct: 780 EKVDLSQSRRRGDPITQHFG---------------------------------FGEDSWP 806

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSG 877
           ++ ++KL  DGL  +G K+ E DP+ +Y+ ++  +     Y   E   +E V++    SG
Sbjct: 807 ESWKEKLDSDGLPIIGVKVEEGDPIVAYFDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSG 866

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             EG  +T     I YR+ R P +GDKF+SR GQKG+CS KWP  D+PF++SG+ PD++ 
Sbjct: 867 NQEGQQIT-----IKYRVTRQPLIGDKFSSRHGQKGVCSRKWPQVDMPFSESGIQPDVII 921

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 922 NPHAFPSRMTIGMF 935



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ G V+YQRLRHMV+DK+Q +
Sbjct: 974  QAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVNDKFQVR 1019


>gi|392568224|gb|EIW61398.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Trametes versicolor FP-101664 SS1]
          Length = 1231

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 367/991 (37%), Positives = 543/991 (54%), Gaps = 131/991 (13%)

Query: 51  DKNFGKPPDKQ------NEFLLTLGAPHIASFDFMLDEG------------LDLAVEDIA 92
           +K F  PP+K+      NEF+     PHI SF+ + D+             L L +EDI 
Sbjct: 22  EKKFKSPPEKESVIPILNEFV----TPHIESFNALFDDSGLPSGDGDGRGLLHLGLEDIG 77

Query: 93  P-IEFEI------------YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRS 139
             + F+             +G  L +   +  +S+P V          + YP+EAR+  +
Sbjct: 78  KRVVFDGRGDIGTESGQRGWGNRLSMWYEQVTVSKPMVSERDTQAKERRVYPSEARERLT 137

Query: 140 VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
            Y G   V + W  +        ++ G +PIM++S RC+LR ++  +L+   E P+E+GG
Sbjct: 138 SYRGRMMVKICWQVNDGPVEVEMRDCGLLPIMVRSTRCNLRGMSSGELVRHHEEPEEFGG 197

Query: 200 YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHF 259
           YF++ G+E+L+R LI  RR+H I++ R ++ NRG  ++   V IR V+ D+++  N LH+
Sbjct: 198 YFVINGNERLIRYLILPRRHHVISLVRPSFVNRGPSYTPYAVQIRCVRPDQTSATNTLHY 257

Query: 260 VTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVF-------FGQIF-KEKLQYDL 311
           ++NGSA   FS RK   ++ +M  L  + + +  D +VF       +G  F  ++++  L
Sbjct: 258 LSNGSAMLRFSWRKQEYVIPIMLIL--KALVSASDKEVFEGVMMQDYGDTFLSDRVELLL 315

Query: 312 R-----HLNEVEIC------------------------DYMLTNCILPHLDDYWDKFLCL 342
           R     HL   + C                         +++   +L HL +  DKF  L
Sbjct: 316 RSFKMYHLYTGDQCLQYLGDKFRIVVNMPEDWTNQAIGVWLINKVVLVHLQNARDKFRML 375

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--------KSGTSAVLKE 394
             M  KL+ +V     +D+ DS   QE++  G+LY  ++K+         + G +  ++ 
Sbjct: 376 LFMLRKLYALVSKSCSVDNPDSPQHQEVLLPGALYGMIIKERLEEALNGFREGIALDVRN 435

Query: 395 SDIYAAF-----------RAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
           S+    F           R S  I + M+NFLATGN+     + L L QASGF I+AE +
Sbjct: 436 SNPAVDFYDKRYIKKVLQRTSYDIGAKMSNFLATGNLVT--PTGLDLQQASGFTIVAEKL 493

Query: 443 NRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           N MRY+SHFR++HRG++F E++++  R+L  +AWGF+CP HTPDG+PCGLLNHL+  C+I
Sbjct: 494 NWMRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPAHTPDGSPCGLLNHLSRTCRI 553

Query: 503 SEYIPSKVLAQIPSVLVSLGML-PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPK 561
                   ++ IP++L + GM     P +     + L V LDGR++G+    +   L   
Sbjct: 554 --VTTPLAVSHIPALLAAHGMTQAFAPSVDG--RRNLCVQLDGRLIGWAPAAVCQQLATS 609

Query: 562 LRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGT 620
           LR+ K  G+  +P  LEI Y+  P    G YPGLYLF    RM+RPV  +  G  + +G+
Sbjct: 610 LRIWKTEGKHSVPLDLEIGYV--PVSKAGQYPGLYLFASRSRMMRPVKYVPNGKDDQVGS 667

Query: 621 FEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
           FEQV+MDI  T  E   G+++H E S T+FLS LANL P  D NQSPRN+YQCQMGKQTM
Sbjct: 668 FEQVYMDIACTPAEIEDGVSSHVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTM 727

Query: 681 GTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDA 740
           GTP    +++   KLYRLQT  +P  RP+ ++T  MD+FP GTNAIVAVISYTGYDMEDA
Sbjct: 728 GTPATALQHRTDNKLYRLQTGQTPIVRPMLHNTYGMDSFPNGTNAIVAVISYTGYDMEDA 787

Query: 741 MILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRL 800
           MILNKS++ERGF +G ++KS  ++L+              + GS   A      +H+   
Sbjct: 788 MILNKSAHERGFGYGTVYKSYTVDLQE-------------LTGSRRIATT--PTLHFGFG 832

Query: 801 RHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
             + +D  +        PA   ++     DGL  VGA+LN  DP+ +Y  ++  R    +
Sbjct: 833 PEIRTDGEKAH------PATLHIDS----DGLPCVGARLNPGDPIAAYVDDTTGRTKFAK 882

Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
           Y G E   V+ VR+    ++ G        +  RI R P +GDKF+SR GQKG+CS KWP
Sbjct: 883 YKGDEVAYVDTVRLIG--SDAGDQELQKINMTLRITRAPVIGDKFSSRHGQKGVCSQKWP 940

Query: 921 AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           A D+PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 941 AIDMPFSESGMQPDVIINPHAFPSRMTIGML 971



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 37/55 (67%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 1011 AGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDPVTR 1065


>gi|430813529|emb|CCJ29126.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1198

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 370/992 (37%), Positives = 539/992 (54%), Gaps = 129/992 (13%)

Query: 35  ILNQNTLSAPSLKNLTDKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEGL-DLAVEDI 91
           I N NTL   +L       F  P  K++ +  LL +  PHI SF+ + D+ L +LAV+DI
Sbjct: 3   IKNFNTLEKNAL-------FRNPSKKKSAYPDLLAITEPHIKSFNALTDDQLLNLAVKDI 55

Query: 92  APIEF-----EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRS------V 140
                        G  L   I +  I++P +P         K  P+E  +          
Sbjct: 56  GKKSVFDRKKAGLGNKLSFRIEEVQIAKPTLPTRERTCVNRKILPSEVWRLVEWGNRFCT 115

Query: 141 YSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGY 200
           Y     + VAWS +G+   T  KE G++PIM+KS RCH+  L+PA LI+  E  +E GGY
Sbjct: 116 YKARLLLKVAWSVNGEQEITDIKEFGQIPIMVKSNRCHIEKLSPADLIKSREESEELGGY 175

Query: 201 FIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFV 260
           FIV G+EK++R+LI  RRN+ +A+ R+++ N+G  ++  G  IR V+ DE++  N LH++
Sbjct: 176 FIVNGNEKIIRMLIIPRRNYVMALVRSSFLNKGTHYTKFGTQIRCVRPDETSHTNTLHYL 235

Query: 261 TNGSARFMFSHRKS-------MCLLGMMQSLHEE-------------------------- 287
           ++G+  F FS RK+       M L  ++ +  +E                          
Sbjct: 236 SDGNCIFRFSWRKNEYLVPVVMILKALINTNDKEIFDSIVGKDKKDTILVDHVEILLRTY 295

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSH 344
               ++ Q  +  + G+ F+  L  D   L    +   +L   +L HLD+ +DKF  L  
Sbjct: 296 KNYELYNQKQTLQYLGEKFRVVLNVD-EDLTHERVGQELLKKIVLVHLDNNYDKFRMLIF 354

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRAS 404
           M  KL+ +V G    D+ DS   QEI+ GG LY  ++K++       L+ + I    + +
Sbjct: 355 MIRKLYSLVFGQCCPDNPDSAQNQEILLGGFLYGMIIKEKIEDYLLSLRNTVIQDLRKPN 414

Query: 405 S--------------------IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
           +                    I S +  FL+TGN+ +  ++ L L Q +GF I+AE +N 
Sbjct: 415 NSVNFFDKKYISKLFQRVPNDIGSKLQYFLSTGNLVS--STGLDLQQTTGFTIIAEKLNF 472

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
            RY+SHFR VHRG++F +++S   R+L  +AWGFICPVHTPDG PCGLLNHLT+ C+I  
Sbjct: 473 YRYLSHFRTVHRGAFFADVKSVTVRKLLPEAWGFICPVHTPDGAPCGLLNHLTSKCKI-- 530

Query: 505 YIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
            + S + +  IP +LV LG+ P + ++ +   +   V L+G+I+GY + ++A+ +   LR
Sbjct: 531 -VTSNINVDSIPYLLVKLGVDPTSNMLGT---EYSTVQLNGKIIGYCMHEVASRIAHLLR 586

Query: 564 MLKI-VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFE 622
             K      IP  LEI  + + E G   Y GLY+F+   RM+RPV  L     +++G+FE
Sbjct: 587 YWKTEKSHNIPLELEIGLIPKSEGGQ--YHGLYIFSSKSRMIRPVKYLPLNKEDFVGSFE 644

Query: 623 QVFMDICITMKEAYPGITT---HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
           QV+++I +    +  G+ T   H E++ ++  S LA+L P  D NQSPRNMYQCQM KQT
Sbjct: 645 QVYLNISLGSHFS-KGVDTQYSHSEINTSNMFSILASLTPFSDFNQSPRNMYQCQMAKQT 703

Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
           MGTP  + RY+   KLY LQT  +P  R   YD   +DNFP GTNAIVAVISYTGYDMED
Sbjct: 704 MGTPASSLRYRTDNKLYLLQTGQTPIVRSKTYDLYGLDNFPNGTNAIVAVISYTGYDMED 763

Query: 740 AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
           A+++NKSSYERGFA+  I+KS  ++L       G + +Y             FG      
Sbjct: 764 ALVINKSSYERGFAYATIYKSEKVDLGQKRK-KGEQIIYH------------FG------ 804

Query: 800 LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
                         FG D  +    +KL  DGL  +G KL E DP+ +Y+ E+  + +  
Sbjct: 805 --------------FGNDKLHPKWLEKLDADGLPMIGVKLEEGDPLAAYFNETTGKTIIQ 850

Query: 860 RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
            Y G E++ VE VR+     + G +   C +I  RI R  T+GDKF+SR GQKG+CS KW
Sbjct: 851 EYHGTEDVFVEEVRLLG--NDSGDMECQCIHIKLRIARPITIGDKFSSRHGQKGVCSQKW 908

Query: 920 PAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           PA D+PF++SG+ PDI+ NPH FPSRMTIG  
Sbjct: 909 PAADMPFSESGIQPDIIINPHAFPSRMTIGMF 940



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 39/47 (82%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GY Y G+ET YSG+ G +M+ +IF G+V+YQRLRHMVSDK+Q +
Sbjct: 978  IKAGYAYNGSETFYSGITGDIMEVEIFVGIVYYQRLRHMVSDKFQVR 1024


>gi|190344605|gb|EDK36311.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1166

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 356/973 (36%), Positives = 522/973 (53%), Gaps = 120/973 (12%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEGLDLA----VEDIAPI------EFEI 98
           +  F  PP  ++ + L   A  PHI SF+ + +          V+DI         + + 
Sbjct: 11  ESRFRNPPKDKSAYPLLADAVSPHIGSFNALTEGPGGGLLNLGVQDIGTKTIFDSNDTDR 70

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            G  L + +    +++P VPA        + YP+E R+  + Y     + V WS +    
Sbjct: 71  LGNKLSIRVESVQLTKPAVPANDKLSMNRRTYPSECRERMTSYRSRLMLKVTWSVNDGEE 130

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
            +  +E G++PIMLKS RCHL  L+P +L+++ E  DE GGYFIV G EKL+R+LI  RR
Sbjct: 131 VSEVREAGQIPIMLKSNRCHLEKLSPDELVKQKEESDELGGYFIVNGIEKLIRMLIVQRR 190

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           NHP+AI R ++ NRG  ++  G+ IR V+ D+++  NVLH++ +G+  F FS RK+  L+
Sbjct: 191 NHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYLV 250

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR------------------ 312
            +M  +  + +    D ++F G +          ++L+  LR                  
Sbjct: 251 PVMMIM--KALVETSDREIFDGIVGADTSNSFLTDRLELLLRSYKKYNLYSKQETLAYLG 308

Query: 313 -----------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
                       ++++E+   +L   +L HL+D  DKF  L  M  KL+ +V G    D+
Sbjct: 309 DKFRVVFGATPDVSDIEVGQEVLKRIVLVHLEDPKDKFRMLLFMIRKLYTLVAGDCSPDN 368

Query: 362 EDSIMLQEIMTGGSLYLQLLKK--EKSGTSAVLK-ESDIYAAFRAS-------------- 404
            D+   QE++ GG LY  ++K+  E+   S  L+  SDI      +              
Sbjct: 369 PDATQHQEVLLGGFLYGMIIKEKIEEYLQSIRLQISSDINRGVAVNFNDRRYMSRVFLRI 428

Query: 405 --SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
             +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F E
Sbjct: 429 NENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAE 486

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           ++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+    +  ++ +P+ L  LG
Sbjct: 487 LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIA--TEASDVSTVPAALAQLG 544

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYL 581
           + P      +       + LDG++VG++  +    +   LR  K+ G   +P  LEI Y+
Sbjct: 545 VSPAHAF--AAGPNLCCIQLDGKVVGWVTHEHGKIVADTLRFWKVEGTHGLPLDLEIGYV 602

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
             P    G YPGLY+F G  RM+RP   L     + +G FEQV+MDI +T  E    + T
Sbjct: 603 --PPSNQGQYPGLYIFGGHSRMMRPTKYLPLDKQDIVGPFEQVYMDIAVTPPEIENNVHT 660

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQT 
Sbjct: 661 HVEFSPTNVLSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALAHRSDNKLYRLQTG 720

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K  
Sbjct: 721 QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVE 780

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            ++L          T + G                                 FG D   +
Sbjct: 781 KVDLSQSRRRGDPITQHFG---------------------------------FGEDSWPE 807

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSGF 878
           + ++KL  DGL  +G K+ E DP+ +Y+ ++  +     Y   E   +E V++    SG 
Sbjct: 808 SWKEKLDSDGLPIIGVKVEEGDPIVAYFDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSGN 867

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
            EG  +T     I YR+ R P +GDKF+SR GQKG+CS KWP  D+PF++SG+ PD++ N
Sbjct: 868 QEGQQIT-----IKYRVTRQPLIGDKFSSRHGQKGVCSRKWPQVDMPFSESGIQPDVIIN 922

Query: 939 PHGFPSRMTIGFL 951
           PH FPSRMTIG  
Sbjct: 923 PHAFPSRMTIGMF 935



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ G V+YQRLRHMV+DK+Q +
Sbjct: 974  QAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVNDKFQVR 1019


>gi|402593918|gb|EJW87845.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
          Length = 1121

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 349/935 (37%), Positives = 504/935 (53%), Gaps = 109/935 (11%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEP--KVPAGPVGIHFNK 128
           H+ SFD++ ++G+ LA  D+   +F +  G+ ++L    A +  P  +V  G   +   K
Sbjct: 9   HVESFDYLAEKGVHLAALDVPAEKFRLPTGEAVELRYTSAQLGYPMVEVKQGSSVVDSLK 68

Query: 129 YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
            +P+E RQ    Y GP  V+V    +G         +G VPIMLKS RCHLR LT  QL+
Sbjct: 69  LFPSECRQRGLTYRGPLKVSVEIRLNGVKMDFCEVIIGEVPIMLKSNRCHLRWLTREQLV 128

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
             GE   E GGYFI  G EK++RLL+ NRRN+PI I R +++ +G LF+  G+ IR V+ 
Sbjct: 129 AHGEEGTEKGGYFICKGTEKVIRLLVANRRNYPIGIIRRSFREKGPLFTQYGMMIRCVRG 188

Query: 249 DESATNNVLHFVTNGSARFMFSHRKSM--------------------------------- 275
           + SA    LH++ +G+      +R+ +                                 
Sbjct: 189 NYSAVMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDHCIMEHMIRCRPGDHF 248

Query: 276 ---CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVE-ICDYMLTNCILPH 331
              C+  M+   +++G+  Q  +    G  F+   Q  +      E +  ++L  C+  H
Sbjct: 249 WKGCVTAMLALCNDDGVVNQKTALTAIGGRFRVATQDRVGPWEVSEDVGRFLLRVCVAIH 308

Query: 332 LDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------- 383
           LD+  DKF  LS+M  KL  + +G    +S D+   QE +  G + L ++++        
Sbjct: 309 LDNDEDKFFLLSYMAQKLIALAKGECAAESPDNPQFQEAVVSGHILLLIIRERLENILSI 368

Query: 384 ---------EKSGTSAVLKESDIYAAF---RASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                    ++   + +L   ++  A    R+  I   +  F+ATGN+      TLQ  Q
Sbjct: 369 ARRKIELEAKRKAENFLLSSHELIRAIGTQRSGEITRGLEYFIATGNLITKGGLTLQ--Q 426

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
            +GF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG PCG
Sbjct: 427 NNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 486

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           LLNH+T + +I  +  +    ++P +L  LGM+  + V     E    V++DG+ VG+I 
Sbjct: 487 LLNHVTASVRIVTHYSNT--NELPKLLGELGMVGHSAVTLLPAESMYPVLVDGKFVGHIS 544

Query: 552 DQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGL---YPGLYLFTGPGRMLRPV 607
              A+ +  +LR LK+  + ++P   EI+ +++    + +   YPGLY+FT P R++RPV
Sbjct: 545 QSQASHIERQLRFLKVSDDARVPSCAEIILVQKSTDPINILVQYPGLYIFTEPARLIRPV 604

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L +  IE+IG FEQV++ ICI  +EA P +T H+E+  +   S  ANLIP PD NQSP
Sbjct: 605 RYLPSNRIEFIGMFEQVYLSICIDPEEAEPNVTMHQEIHPSCLFSFAANLIPFPDHNQSP 664

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RN+YQCQMGKQTMG P   W Y+   K+YRLQ P  P  +P  Y+   +D +P+GTNA V
Sbjct: 665 RNVYQCQMGKQTMGIPVHAWNYRADNKMYRLQFPQDPIVKPDPYEKYGIDEYPLGTNACV 724

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           AVISYTGYDMEDAM++NKSSYERGFAHG I K   I L  G     TE++          
Sbjct: 725 AVISYTGYDMEDAMVINKSSYERGFAHGSIVKVERINLTEGRP---TESL---------- 771

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS 847
                                     F  DP N   +  +  DGL   G    E DP YS
Sbjct: 772 -------------------------VFLCDPKNP--QKTIDLDGLPIPGRLYMEGDPYYS 804

Query: 848 YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC-AYIGYRIQRNPTVGDKFA 906
            ++   N Y   +Y   E      VR+  G    G+    C A I +R QRNP +GDKFA
Sbjct: 805 VYEIDTNNYKVHKYKYAEAAFCGSVRIVEGGEHIGNSKGKCHALIQWRTQRNPIIGDKFA 864

Query: 907 SRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           SR GQKGI S  WP E +PF++SG+VPDI+FNPHG
Sbjct: 865 SRHGQKGINSFLWPTESMPFSESGMVPDIIFNPHG 899



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 43/56 (76%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
           + +GYNYYG ETMYSGVDG  M+ QIFFG+V+YQRLRHM++DK+Q +     DP  
Sbjct: 939 VRAGYNYYGNETMYSGVDGREMEVQIFFGIVYYQRLRHMIADKFQVRSTGPTDPVT 994


>gi|260946741|ref|XP_002617668.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849522|gb|EEQ38986.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 1232

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 363/973 (37%), Positives = 520/973 (53%), Gaps = 120/973 (12%)

Query: 51   DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG-----LDLAVEDIAPIEF------E 97
            +K F  PP  ++ +  L    APH+ SF+  L EG     L+LAV+DI            
Sbjct: 76   EKRFQNPPKDKSAYPLLADAVAPHVGSFN-ALTEGADGGLLNLAVKDIGTKTIFDSNDET 134

Query: 98   IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              G  LK+ +    ++ P VP         K +P+E R+  S Y G   + V WS +   
Sbjct: 135  RLGNKLKIRVDSVQLARPSVPPTDKLSVNRKTFPSECRERMSTYRGKLLMKVVWSVNDGE 194

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
              +  ++ G+VPIMLKS RCHL  L+P +L+ + E  DE GGYFIV G EKLVR+LI  R
Sbjct: 195  EVSEVRDGGQVPIMLKSNRCHLEKLSPDELVAQKEESDELGGYFIVNGIEKLVRMLIVQR 254

Query: 218  RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS--- 274
            RNHP+A+ R ++ NRG  ++  GV IR V+ D+++  NVLH++ +G+  F FS RK+   
Sbjct: 255  RNHPMALIRPSFGNRGASYTKFGVQIRCVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYL 314

Query: 275  ----MCLLGMMQSLHEE-----------------------------GIHTQHDSKVFFGQ 301
                M L  ++++   E                              +H+Q  +  + G 
Sbjct: 315  VPVVMVLKALVETNDREIFDGIVAADTSNSFLTDRLELLLRTYKQYNLHSQKSTLAYLGD 374

Query: 302  IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
             F+         ++++++   +L   +L HL D  DKF  L     KL+ +V G    D+
Sbjct: 375  KFRVAFGA-TPDVSDIDVGREVLKRIVLVHLPDNADKFRLLLFSIRKLYTLVAGDCAPDN 433

Query: 362  EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS-------------- 404
             D+   QE++ GG LY  ++K++       +K    SDI    R +              
Sbjct: 434  PDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQISSDIGRGVRVNFNDRKYMSRVFMRT 493

Query: 405  --SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F E
Sbjct: 494  NENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAE 551

Query: 463  MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
            ++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   CQI+    +  ++ +P+ L  LG
Sbjct: 552  LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCQIA--TKASDVSAVPAALARLG 609

Query: 523  MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYL 581
            + P              V LDG+IVG+   +    +   LR+ K+ G   +PK LEI Y+
Sbjct: 610  VSPAHTFAAG--PGLCCVHLDGKIVGWTSHEQGRIVADSLRLWKVQGLHNLPKDLEIGYV 667

Query: 582  KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
              P    G YPGLYLF G  RM+RP   L     + +G FEQV+M+I +T  E    + T
Sbjct: 668  --PPSSKGQYPGLYLFGGHSRMMRPAKYLPLDKEDILGPFEQVYMNIAVTPAEIEENVHT 725

Query: 642  HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
            H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQT 
Sbjct: 726  HVEFAPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQTG 785

Query: 702  ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K  
Sbjct: 786  QTPIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVE 845

Query: 762  FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
             ++L             S   G  +     FG           SD+W            +
Sbjct: 846  KVDLS-----------LSRRRGDPITQHFGFG-----------SDEWP-----------E 872

Query: 822  ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSGF 878
              ++KL  DGL  +G K+ E DP+ +Y+ E+  +     Y   E   +E V++    +G 
Sbjct: 873  TWKEKLDDDGLPLIGVKVEEGDPIVAYFDETLGKTKIKTYHSSEPAYIEEVKLLADDTGD 932

Query: 879  TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
            +E   +T     I YR+ R P +GDKF+SR GQKG+CS KWP  D+P+++SG+ PD++ N
Sbjct: 933  SECQQIT-----IKYRVTRAPLIGDKFSSRHGQKGVCSRKWPTVDMPYSESGIQPDVIIN 987

Query: 939  PHGFPSRMTIGFL 951
            PH FPSRMTIG  
Sbjct: 988  PHAFPSRMTIGMF 1000



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNY+G E MYSGV G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1040 AGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVR 1084


>gi|448083903|ref|XP_004195470.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
 gi|359376892|emb|CCE85275.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
          Length = 1167

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 362/970 (37%), Positives = 522/970 (53%), Gaps = 114/970 (11%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLD--EG--LDLAVEDIAPIEF------EI 98
           +K F  PP ++  F  L+   APHI SF+ + +  EG  L+L V+DI           E 
Sbjct: 11  EKRFQNPPKEKPTFQMLVDAVAPHIGSFNALTEGPEGGLLNLGVKDIGSKSIFDSNDEER 70

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            G  L + +    +++P VP         + YP E R+  + Y     + V W  + +  
Sbjct: 71  LGNKLSIRVDSVQLAKPSVPNNDKLSINRRTYPAECRERMTTYRSRLMLKVTWKVNDEEE 130

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
            +  +E G+VPIMLKS RCHL  L+  +L+E  E  DE GGYFIV G EKL+R+LI  RR
Sbjct: 131 VSEIREAGQVPIMLKSNRCHLEKLSSHELVEHREESDELGGYFIVNGIEKLIRMLIVQRR 190

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           NHP+AI R ++ NRG  ++  GV IR V+ D+++  NVLH++ +G+  F FS RK+  L+
Sbjct: 191 NHPMAIIRPSFANRGAAYTKFGVQIRCVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYLV 250

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQI----------------FKEKLQYDL----------- 311
            +M  L  + +   +D ++F G +                 K   QY+L           
Sbjct: 251 PVMMVL--KALVETNDREIFDGIVGADISNSFLTDRLELLLKTFKQYNLCTKKETLAYLG 308

Query: 312 ----------RHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
                       ++++E+ + ++   +L HL +  DKF  L  M  KL+ +V G    D+
Sbjct: 309 NKFRVAFGSTPDVSDIEVGEEVIRRIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCCPDN 368

Query: 362 EDSIMLQEIMTGGSLYLQLLKK--EKSGTSAVLK-ESDIYAAFRAS-------------- 404
            D+   QEI+ GG LY  ++K+  E+   S  L+ +SDI      +              
Sbjct: 369 PDATQHQEILLGGFLYGMIIKEKIEEYLQSIRLQIQSDINRGIAVNFKDRKYMSRVFMRI 428

Query: 405 --SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
             +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F E
Sbjct: 429 NENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAE 486

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           ++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+++    +  ++++P  L  LG
Sbjct: 487 LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKVA--TGAVDVSKVPVALAELG 544

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYL 581
           + P      +       + LDGRI+G+   +    +   LR  K+ G   +P  LEI Y+
Sbjct: 545 VSPAHSY--AAGPSLCCIQLDGRIIGWCTHEQGKIVADTLRFWKVEGTHGVPLELEIGYV 602

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
             P    G YPGLYLF G  RM+RP   L    ++ +G FEQV++DI +T +E    I +
Sbjct: 603 --PPTHKGQYPGLYLFGGHSRMMRPTRYLPLDKVDIVGPFEQVYLDIAVTPEEIENNIHS 660

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E + T+ LS LANL P  D NQSPRNMYQCQM KQTMGTP +   ++   KLYRLQT 
Sbjct: 661 HVEYAPTNILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRSDNKLYRLQTG 720

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+NKS+ ERGF +G ++K  
Sbjct: 721 QTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVE 780

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            I+L S        T + G                                 FG D   +
Sbjct: 781 KIDLSSSRRRGDPITQHFG---------------------------------FGTDEWPE 807

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
             ++KL  DGL  +G ++ E DP+ +Y+ ++  R     Y   E   +E V++     +G
Sbjct: 808 GWKEKLDADGLPLIGTRVEEGDPIIAYYDDTLGRTKVKTYHSSEMAYIEEVKLLG--DDG 865

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           G      A I YR+ R P +GDKF+SR GQKG+CS KWP  D+PF++SG+ PD++ NPH 
Sbjct: 866 GDHECQQATIKYRVPRAPLIGDKFSSRHGQKGVCSRKWPQIDMPFSESGMQPDVIINPHA 925

Query: 942 FPSRMTIGFL 951
           FPSRMTIG  
Sbjct: 926 FPSRMTIGMF 935



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L +GYNY+G E MYSGV G  ++A I+ G V+YQRLRHMV+DK+Q +
Sbjct: 973  LNAGYNYHGNEPMYSGVTGEELRADIYIGCVYYQRLRHMVNDKFQVR 1019


>gi|170584696|ref|XP_001897130.1| DNA-directed RNA polymerase, beta subunit family protein [Brugia
           malayi]
 gi|158595460|gb|EDP34013.1| DNA-directed RNA polymerase, beta subunit family protein [Brugia
           malayi]
          Length = 1108

 Score =  603 bits (1556), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 352/936 (37%), Positives = 506/936 (54%), Gaps = 124/936 (13%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEP--KVPAGPVGIHFNK 128
           H+ SFD++ ++G+ LA  D+   +F +  G+ ++L    A +  P  +V  G   +   K
Sbjct: 9   HVESFDYLAEKGIHLAALDVPAEKFRLPTGEAVELRYTSAQLGYPMVEVKQGSSVVDSLK 68

Query: 129 YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
            +P+E RQ    Y GP  V+V    +G         VG VPIMLKS RCHLR LT  QL+
Sbjct: 69  LFPSECRQRGLTYRGPLKVSVEIRLNGVKMDFCEVIVGEVPIMLKSNRCHLRWLTREQLV 128

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
             GE   E GGYFI  G EK++RLL+ NRRN+PI I R +++ +G LF+  G+ IR V+ 
Sbjct: 129 AHGEEGTEKGGYFICKGTEKVIRLLVANRRNYPIGIVRRSFREKGPLFTQYGMMIRCVRG 188

Query: 249 DESATNNVLHFVTNGSARFMFSHRKSM--------------------------------- 275
           + SA    LH++ +G+      +R+ +                                 
Sbjct: 189 NYSAVMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRPGDHF 248

Query: 276 ---CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLR--HLNEVEICDYMLTNCILP 330
              C+  M+   +++G+  Q  +    G  F+   Q  +    ++E ++  ++L  C+  
Sbjct: 249 WKGCVTAMLALCNDDGVVNQKTALTAIGARFRVATQDRVGPWEISE-DVGRFLLRVCVAI 307

Query: 331 HLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------- 383
           HLD+  DKF  LS+M  KL  + +G    +S D+   QE    G + L ++++       
Sbjct: 308 HLDNDEDKFFLLSYMAQKLIALAKGECAAESPDNPQFQEAAVSGHILLLIIRERLENTLS 367

Query: 384 ----------EKSGTSAVLKESDIYAAF---RASSIESAMTNFLATGNVSAGKNSTLQLM 430
                     ++   S +L   ++  A    R+  I   +  F+ATGN+      TLQ  
Sbjct: 368 IARRKIELEAKRKAESFLLSSHELIRAMGTQRSGEITRGLEYFIATGNLITKGGLTLQ-- 425

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q +GF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG PC
Sbjct: 426 QNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPC 485

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYI 550
           GLLNH+T + +I  +  +   +++P +L  LGM+               V++DG+ VGYI
Sbjct: 486 GLLNHVTASVRIVTHYSNT--SELPKLLGELGMM-------------YPVLVDGKFVGYI 530

Query: 551 LDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKR---PEKGMGLYPGLYLFTGPGRMLRP 606
               A+ +  +LR LK+  + ++P   EI+ +++   P   +  YPGLY+FT P R++RP
Sbjct: 531 SQSEASHIERQLRFLKVSDDVRLPSCAEIILVQKSIDPINILVQYPGLYIFTEPARLIRP 590

Query: 607 VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           V  L +  IE+IGTFEQV++ ICI  +EA P +T H+E+  +   S  ANLIP PD NQS
Sbjct: 591 VRYLPSNRIEFIGTFEQVYLSICIDPEEAEPNVTMHQEIHPSCLFSFAANLIPFPDHNQS 650

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRN+YQCQMGKQTMG P   W Y+   K+YRLQ P +P  +P  Y+   +D +P+GTNA 
Sbjct: 651 PRNVYQCQMGKQTMGIPVHAWNYRADNKMYRLQFPQNPIVKPDPYEKYGIDEYPLGTNAC 710

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAVISYTGYDMEDAM++NKSSYERGFAHG I K   I L  G     TE++         
Sbjct: 711 VAVISYTGYDMEDAMVINKSSYERGFAHGSIVKVERINLTEGRP---TESL--------- 758

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY 846
                                      F  DP N   +  +G DGL   G    E DP Y
Sbjct: 759 --------------------------VFLCDPKNP--QKTIGLDGLPIPGRLYMEGDPYY 790

Query: 847 SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC-AYIGYRIQRNPTVGDKF 905
           S ++   N Y   +Y   E      VR+       G+    C A I +R QRNP +GDKF
Sbjct: 791 SVYEIDTNNYKVHKYKYAEAAFCGSVRIVEEGEHIGNSKGKCHALIQWRTQRNPIIGDKF 850

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           ASR GQKGI S  WP E +PF++SG+VPDI+FNPHG
Sbjct: 851 ASRHGQKGINSFLWPTESMPFSESGMVPDIIFNPHG 886



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            + +GYNYYG ETMYSGVDG  ++ QIFFG+V+YQRLRHM++DK+Q +     DP      
Sbjct: 926  VRAGYNYYGNETMYSGVDGRELEVQIFFGIVYYQRLRHMIADKFQVRSTGPTDPVTLQPV 985

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSS 876
                  G +  G    ERD M ++      ++R   C       +C     M S
Sbjct: 986  KGRKKGGGIRFGEM--ERDAMIAHGAAFTLQDRLFNCSDRDIAHICARCGSMIS 1037


>gi|410077755|ref|XP_003956459.1| hypothetical protein KAFR_0C03320 [Kazachstania africana CBS 2517]
 gi|372463043|emb|CCF57324.1| hypothetical protein KAFR_0C03320 [Kazachstania africana CBS 2517]
          Length = 1206

 Score =  603 bits (1555), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 368/991 (37%), Positives = 533/991 (53%), Gaps = 138/991 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIA--------PIE 95
           +  F  PP  Q+ F L   A  PH+ SF+  L EG     L++AV+DI         P  
Sbjct: 24  ESRFINPPKDQSAFPLLKDAIEPHVGSFN-ALTEGSDGGLLNIAVKDIGEKVIFDGKPSN 82

Query: 96  FE--------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNV 147
            E          G  L +++ + +I++P    G       K +P+E+RQ  + Y G   +
Sbjct: 83  LEDEQELKNRYLGNKLSVSVEQVSIAKPMSNDGVTSAVERKVFPSESRQRLATYKGKLML 142

Query: 148 TVAWSW-DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGH 206
            + WS  DG+   +  ++ G +P+ML+S RCHL  L+P +L+   E  DE GGYFI+ G 
Sbjct: 143 KLKWSVNDGEETYSEIRDCGGLPVMLQSNRCHLNKLSPHELVREREESDEMGGYFIINGI 202

Query: 207 EKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR 266
           EKL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV+ D+++  NVLH++ +G   
Sbjct: 203 EKLIRMLIVQRRNHPMAIIRPSFVNRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVT 262

Query: 267 FMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHL---- 314
           F FS RK+  L+ ++  L  + ++   D ++F G +          ++L+  LR      
Sbjct: 263 FRFSWRKNEYLIPVVMIL--KALYDISDREIFDGIVGSDTANSFLTDRLELLLRGFKKRY 320

Query: 315 ----NEVEICDYM-----------------------LTNCILPHL--DDYWDKFLCLSHM 345
               N  +I  Y+                       +   +L HL  ++  DK   L  M
Sbjct: 321 PTLQNRTQILQYLGDKFRFVFQASPDKSDYEVGQEVINRIVLVHLGQNNNQDKLRMLLFM 380

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTS 389
             KL+ +V G    D+ D+   QE++ GG LY  ++K++                  G +
Sbjct: 381 IRKLYSLVAGECAPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQGIMAQVRTDVNRGMA 440

Query: 390 AVLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
              K+    +        +I S +  FL+TGN+ +   S L L Q SG+V++AE IN  R
Sbjct: 441 INFKDRKYMSRVLMRVNENIGSKLQYFLSTGNLVS--QSGLDLQQVSGYVVVAEKINFHR 498

Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
           ++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS   
Sbjct: 499 FISHFRMVHRGSFFAQLKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS--T 556

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++Q+  +L SLG+ P +    + P     V LDG+I+G +  +    +   LR LK
Sbjct: 557 KQSDVSQVAPLLYSLGVAPASHTFAAGPS-LCCVQLDGKIIGCVSHEQGKIIADTLRFLK 615

Query: 567 IVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV 624
           + G+   +P  LEI Y+  P    G YPGLYLF G  RM+RPV  L     + +G FEQV
Sbjct: 616 VEGKTPGLPLDLEIGYV--PPSTKGQYPGLYLFAGHSRMMRPVRYLPLDKEDIVGPFEQV 673

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
           +M+I +T +E    I +H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP 
Sbjct: 674 YMNIAVTPQEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPG 733

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
           +   ++   KLYRLQ+  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+N
Sbjct: 734 VALCHRSDNKLYRLQSGQTPIVKANLYDEYGMDNFPNGTNAVVAVISYTGYDMDDAMIIN 793

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           KS+ ERGFA+G ++K   ++L    N     T + G                        
Sbjct: 794 KSADERGFAYGTMYKVEKVDLALNRNRGDPITQHFG------------------------ 829

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK 864
                    FG D   K   DKL  DGL Y+G  + E DP+ +Y+ ++ N+  T  Y   
Sbjct: 830 ---------FGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPICAYFDDTLNKTKTKTYHSS 880

Query: 865 EEMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
           E   +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP
Sbjct: 881 EPAYIEEVNLIGDDSNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 935

Query: 921 AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 936 TIDMPFSETGIQPDVIINPHAFPSRMTIGMF 966



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1004 IKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 1050


>gi|254566671|ref|XP_002490446.1| RNA polymerase I subunit A135 [Komagataella pastoris GS115]
 gi|238030242|emb|CAY68165.1| RNA polymerase I subunit A135 [Komagataella pastoris GS115]
 gi|328350840|emb|CCA37240.1| DNA-directed RNA polymerase I subunit A2 [Komagataella pastoris CBS
           7435]
          Length = 1165

 Score =  603 bits (1555), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 370/977 (37%), Positives = 532/977 (54%), Gaps = 115/977 (11%)

Query: 45  SLKNLTDKN-FGKPPDKQNEF--LLTLGAPHIASFDFMLD--EG--LDLAVEDI-APIEF 96
           S K L  +N F  PP  ++ F  L    APHI SF+ + D   G  L+LAV+DI A   F
Sbjct: 4   SFKTLERENRFKNPPTDKSAFPLLEQAVAPHIGSFNALTDGLNGGLLNLAVKDIGAKTIF 63

Query: 97  EI-----YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAW 151
           +       G  LK+ +    +++P V  G       K  P+E R+    Y   F + V W
Sbjct: 64  DSNDPSRLGNKLKIRVDAVQLAKPSVAVGDKLSVNRKTLPSECRERMITYKSRFMLKVCW 123

Query: 152 SWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVR 211
           S +     T  +E G++P+MLKS RCHL  ++P +L++  E  DE GGYFIV G EKLVR
Sbjct: 124 SVNDGPEETEIREAGQIPVMLKSNRCHLEKMSPNELVKNKEESDELGGYFIVNGIEKLVR 183

Query: 212 LLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSH 271
           +LI  RRNHP+A+ R ++ NRG  ++  G+ IR+V+ D+++  NVLH++ +G+  F FS 
Sbjct: 184 MLIVQRRNHPMALIRPSFGNRGDSYTQFGIQIRAVRPDQTSQTNVLHYLKDGNVTFRFSW 243

Query: 272 RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--------KLQYDLRH---------- 313
           RK+  L+ +   L  + +   +D ++F G +  E        +L+  LR+          
Sbjct: 244 RKNEYLVPVPMIL--KALVETNDREIFDGIVGSETSNSFLTDRLELLLRNYKHYKLVSKQ 301

Query: 314 -------------------LNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQ 354
                              +++V++   +L   +L HL D  DKF  L  M  KL+ +V 
Sbjct: 302 ETLAYLGDKFRVVFNATPDVSDVDVGKEVLRRIVLVHLPDNRDKFRLLLFMIRKLYALVS 361

Query: 355 GMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------- 404
           G    D+ D+   QE++ GG LY  ++K++     A ++   ++DI   +  +       
Sbjct: 362 GDCCPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLASIRLQIQTDINRGYPVNFDEPKYM 421

Query: 405 ---------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
                    +I   +  FL+TGN+ +   + L L Q SG+ ++AE IN  R++SHFR VH
Sbjct: 422 SRVFQRINENIGKKLQYFLSTGNLVS--QTGLDLQQVSGYTVVAEKINFYRFISHFRMVH 479

Query: 456 RGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP 515
           RGS+F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+IS       ++++P
Sbjct: 480 RGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIS--TEESDVSKVP 537

Query: 516 SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPK 574
            VL  LG +    V  + P Q   V LDG+IVG+   + A  +   LR  K+ G   IP 
Sbjct: 538 KVLSKLG-VSANHVFAAGP-QMCCVQLDGKIVGWCTHEQAKIVADTLRFWKVEGGHGIPL 595

Query: 575 SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKE 634
            LE+ ++  P    G YPGLYLF G  RM RPV  L     + IG FEQ +++I +T +E
Sbjct: 596 DLEVGHV--PPSSRGQYPGLYLFGGRARMTRPVRYLPLDKEDIIGPFEQAYINIAVTPEE 653

Query: 635 AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGK 694
               + +H E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   K
Sbjct: 654 IESNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNK 713

Query: 695 LYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAH 754
           LYRLQT  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKSS ERGF +
Sbjct: 714 LYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSSDERGFGY 773

Query: 755 GCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF 814
           G ++K   I+L             S   G  +     FG           +D+W      
Sbjct: 774 GTMYKVEVIDLAD-----------SRRKGDPITQHFGFG-----------TDEWP----- 806

Query: 815 GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM 874
                 ++ +  L  DGL  +G  +NE DP+ +Y+ ++  +     Y   E   +E V++
Sbjct: 807 ------ESWKQNLDEDGLPAIGTLVNEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKL 860

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
            S   + G        I YRI R P +GDKF+SR GQKG+CS KWP  D+PFT++G+ PD
Sbjct: 861 IS--DDLGDSELQMVTIKYRITRQPQIGDKFSSRHGQKGVCSRKWPQIDMPFTETGIQPD 918

Query: 935 IVFNPHGFPSRMTIGFL 951
           ++ NPH FPSRMTIG  
Sbjct: 919 VIINPHAFPSRMTIGMF 935



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + +GYNY+G E MYSGV G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 973  ISAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVR 1019


>gi|256270098|gb|EEU05336.1| Rpa135p [Saccharomyces cerevisiae JAY291]
          Length = 1203

 Score =  603 bits (1555), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 374/990 (37%), Positives = 534/990 (53%), Gaps = 137/990 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIA--------PIE 95
           +  F  PP  ++ F L   A  PHI SF+  L EG     L+L V+DI         P+ 
Sbjct: 22  ESRFINPPKDKSAFPLLQEAVQPHIGSFN-ALTEGPDGGLLNLGVKDIGEKVIFDGKPLN 80

Query: 96  FE-------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            E         G  L +++ + +I++P    G       K YP+E+RQ  + Y G   + 
Sbjct: 81  SEDEISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLK 140

Query: 149 VAWSWDGKAGGTF-TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
           + WS +      F  ++ G +P+ML+S RCHL  ++P +L++  E  DE GGYFIV G E
Sbjct: 141 LKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIE 200

Query: 208 KLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF 267
           KL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV+ D+++  NVLH++ +G   F
Sbjct: 201 KLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTF 260

Query: 268 MFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR------- 312
            FS RK+  L+ ++  L +   HT  D ++F G I          ++L+  LR       
Sbjct: 261 RFSWRKNEYLVPVVMIL-KALCHTS-DREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYP 318

Query: 313 HL------------------------NEVEICDYMLTNCILPHL--DDYWDKFLCLSHMT 346
           HL                        +++E+   +L   +L HL  D   DKF  L  M 
Sbjct: 319 HLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMI 378

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSA 390
            KL+ +V G    D+ D+   QE++ GG LY  +LK++                  G + 
Sbjct: 379 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAI 438

Query: 391 VLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
             K+    +        +I S M  FL+TGN+ +   S L L Q SG+ ++AE IN  R+
Sbjct: 439 NFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRF 496

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS    
Sbjct: 497 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS--TQ 554

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
              +++IPS+L SLG+ P +    + P     V +DG+I+G++  +    +   LR  K+
Sbjct: 555 QSDVSRIPSILYSLGVAPASHTFAAGPS-LCCVQIDGKIIGWVSHEQGKIIADTLRYWKV 613

Query: 568 VGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
            G+   +P  LEI Y+  P    G YPGLYLF G  RMLRPV  L     + +G FEQV+
Sbjct: 614 EGKTPGLPIDLEIGYV--PPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M+I +T +E    + TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +
Sbjct: 672 MNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              ++   KLYRLQT  +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 ALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ ERGF +G ++K+  ++L    N     T + G                         
Sbjct: 792 SADERGFGYGTMYKTEKVDLALNRNRGDPITQHFG------------------------- 826

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                   FG D   K   +KL  DGL Y+G  + E DP+ +Y+ ++ N+     Y   E
Sbjct: 827 --------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSE 878

Query: 866 EMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
              +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP 
Sbjct: 879 PAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPT 933

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 934 IDMPFSETGIQPDIIINPHAFPSRMTIGMF 963



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1002 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 1047


>gi|50303741|ref|XP_451816.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640948|emb|CAH02209.1| KLLA0B06303p [Kluyveromyces lactis]
          Length = 1203

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 371/984 (37%), Positives = 537/984 (54%), Gaps = 131/984 (13%)

Query: 51  DKNFGKPPDKQNE--FLLTLGAPHIASFDFMLDEG-----LDLAVEDI-APIEFE----- 97
           +  F  PP  ++   FL     PHI SF+  L EG     L+L  +DI + + F+     
Sbjct: 27  ESRFINPPKDKSAYPFLADAVQPHIGSFN-ALTEGPDGGLLNLGAKDIGSKVIFDGKGSD 85

Query: 98  ----IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW 153
                 G  L L+I + +IS+P    G       K +P+E+RQ  + Y G   + + WS 
Sbjct: 86  TNPNYLGNKLSLSIEQVSISKPTSNDGVSSAVERKVFPSESRQRLTSYRGKILLKLKWSV 145

Query: 154 -DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRL 212
            DG+   T  ++ G +PIML+S RCHL  ++P +L+E  E  DE+GGYFIV G EKL+R+
Sbjct: 146 NDGEETFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHREESDEFGGYFIVNGIEKLIRM 205

Query: 213 LINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
           LI  RRNHP+AI R ++ NRG  +S  G+ IRSV+ D+++  NVLH++ +G   F FS R
Sbjct: 206 LIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWR 265

Query: 273 KSMCLLGMMQSLHEEGIHTQHDSKVF-----------------------FGQIF------ 303
           K+  L+ ++  L    +   +D ++F                       F + +      
Sbjct: 266 KNEYLIPVVMILR--ALCDTNDREIFDHVVGGDTSNSFLTDRLELLLRGFKKRYPTLQNR 323

Query: 304 KEKLQY---DLR-------HLNEVEICDYMLTNCILPHL-DDYWDKFLCLSHMTCKLFHV 352
           K+ LQY     R        + ++++   +L   +L HL ++  DKF  L  M  KL+ +
Sbjct: 324 KQTLQYLGDKFRVVFQASPDMTDLQVGQELLNRIVLVHLGENNKDKFNMLLFMIRKLYSL 383

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS----- 404
           V G    D+ D+   QEI+ GG LY  ++K++       ++   ++DI      +     
Sbjct: 384 VAGECSPDNPDAAQHQEILLGGFLYGMIVKEKIEEYLQNIRLQIQTDINRGLAINFKDQK 443

Query: 405 -----------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRA 453
                      +I S +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR 
Sbjct: 444 YMNKVLMRVNENIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRM 501

Query: 454 VHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
           VHRGS+F +++++  R+L  ++WGF CPVHTPDG+PCGLLNHL+  C+IS       +++
Sbjct: 502 VHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLNHLSHKCKIS--TEQSDVSK 559

Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-- 571
           IPS+L SLG+ P   VI + P     V LDG+I+G+   +    +   LR  K+ G+   
Sbjct: 560 IPSILYSLGVTPAAHVIAAGPSMCC-VQLDGKIIGWCSHEQGKVVADTLRFWKVEGKTPG 618

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
           +P  LE+ Y+  P    G YPGL+LF G  RM+RPV  L     + +G FEQV+M+I +T
Sbjct: 619 LPVDLEVGYV--PPTTSGQYPGLFLFGGHSRMMRPVRYLPLDKEDIVGPFEQVYMNIAVT 676

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            +E    + +H E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++ 
Sbjct: 677 PEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRS 736

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             KLYRLQT  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERG
Sbjct: 737 DNKLYRLQTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERG 796

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           F +G ++K   + L    +     T + G                               
Sbjct: 797 FGYGTMYKVEKVNLSMNRSRGDPITQHFG------------------------------- 825

Query: 812 DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEV 871
             FG D   K   +KL  DGL  +G  + E DP+ +Y+ ++ N+     Y   E   +E 
Sbjct: 826 --FGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEE 883

Query: 872 VRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
           V++    SS F E  ++T     I YRI+R P +GDKF+SR GQKG+CS KWP  D+PF+
Sbjct: 884 VKLIGDESSKFQELQAIT-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFS 938

Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
           ++G+ PD++ NPH FPSRMTIG  
Sbjct: 939 ETGIQPDVIINPHAFPSRMTIGMF 962



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1001 KAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVR 1046


>gi|6325267|ref|NP_015335.1| Rpa135p [Saccharomyces cerevisiae S288c]
 gi|133320|sp|P22138.1|RPA2_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA135;
           AltName: Full=DNA-directed RNA polymerase I 135 kDa
           polypeptide; Short=A135; AltName: Full=DNA-directed RNA
           polymerase I polypeptide 2; Short=RNA polymerase I
           subunit 2
 gi|172464|gb|AAA34993.1| RNA polymerase I (second largest subunit) [Saccharomyces
           cerevisiae]
 gi|887587|emb|CAA90154.1| Rpa2p [Saccharomyces cerevisiae]
 gi|939744|gb|AAA97589.1| Rpa135p [Saccharomyces cerevisiae]
 gi|1314085|emb|CAA95050.1| Rpa2p [Saccharomyces cerevisiae]
 gi|190407954|gb|EDV11219.1| RNA polymerase I subunit [Saccharomyces cerevisiae RM11-1a]
 gi|259150163|emb|CAY86966.1| Rpa135p [Saccharomyces cerevisiae EC1118]
 gi|285815545|tpg|DAA11437.1| TPA: Rpa135p [Saccharomyces cerevisiae S288c]
 gi|323350179|gb|EGA84326.1| Rpa135p [Saccharomyces cerevisiae VL3]
          Length = 1203

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 374/990 (37%), Positives = 534/990 (53%), Gaps = 137/990 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIA--------PIE 95
           +  F  PP  ++ F L   A  PHI SF+  L EG     L+L V+DI         P+ 
Sbjct: 22  ESRFINPPKDKSAFPLLQEAVQPHIGSFN-ALTEGPDGGLLNLGVKDIGEKVIFDGKPLN 80

Query: 96  FE-------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            E         G  L +++ + +I++P    G       K YP+E+RQ  + Y G   + 
Sbjct: 81  SEDEISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLK 140

Query: 149 VAWSWDGKAGGTF-TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
           + WS +      F  ++ G +P+ML+S RCHL  ++P +L++  E  DE GGYFIV G E
Sbjct: 141 LKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIE 200

Query: 208 KLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF 267
           KL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV+ D+++  NVLH++ +G   F
Sbjct: 201 KLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTF 260

Query: 268 MFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR------- 312
            FS RK+  L+ ++  L +   HT  D ++F G I          ++L+  LR       
Sbjct: 261 RFSWRKNEYLVPVVMIL-KALCHTS-DREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYP 318

Query: 313 HL------------------------NEVEICDYMLTNCILPHL--DDYWDKFLCLSHMT 346
           HL                        +++E+   +L   +L HL  D   DKF  L  M 
Sbjct: 319 HLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMI 378

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSA 390
            KL+ +V G    D+ D+   QE++ GG LY  +LK++                  G + 
Sbjct: 379 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAI 438

Query: 391 VLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
             K+    +        +I S M  FL+TGN+ +   S L L Q SG+ ++AE IN  R+
Sbjct: 439 NFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRF 496

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS    
Sbjct: 497 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS--TQ 554

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
              +++IPS+L SLG+ P +    + P     V +DG+I+G++  +    +   LR  K+
Sbjct: 555 QSDVSRIPSILYSLGVAPASHTFAAGPS-LCCVQIDGKIIGWVSHEQGKIIADTLRYWKV 613

Query: 568 VGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
            G+   +P  LEI Y+  P    G YPGLYLF G  RMLRPV  L     + +G FEQV+
Sbjct: 614 EGKTPGLPIDLEIGYV--PPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M+I +T +E    + TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +
Sbjct: 672 MNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              ++   KLYRLQT  +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 ALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ ERGF +G ++K+  ++L    N     T + G                         
Sbjct: 792 SADERGFGYGTMYKTEKVDLALNRNRGDPITQHFG------------------------- 826

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                   FG D   K   +KL  DGL Y+G  + E DP+ +Y+ ++ N+     Y   E
Sbjct: 827 --------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSE 878

Query: 866 EMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
              +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP 
Sbjct: 879 PAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPT 933

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 934 IDMPFSETGIQPDIIINPHAFPSRMTIGMF 963



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1002 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 1047


>gi|388582560|gb|EIM22864.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Wallemia sebi CBS 633.66]
          Length = 1179

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 347/969 (35%), Positives = 525/969 (54%), Gaps = 110/969 (11%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG------LDLAVEDIAPIEFEIYGKT 102
           ++ F  P +K   +  L  L  PH+ SF+ +  +       LD A+ DI         + 
Sbjct: 9   ERTFKNPSNKGTNYPVLQELVKPHVDSFNMLFKDSNGGEGLLDKALRDIPSRVIIDDKQR 68

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           L+L   +  I++P V          + +P EAR+  + Y    +V +    +G+    F 
Sbjct: 69  LELTYTQLTIAKPMVLDKDKNSTDRRVFPFEARERLTTYKSRMSVKIQVKVNGEIKSEFI 128

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           +E G VP+M++S+RC+L+ +T A+L+++ E  DE GGYFI+ G+EKL+RLL+  RR++  
Sbjct: 129 RECGSVPVMVRSERCNLQKMTSAELVQKHEESDEMGGYFIINGNEKLMRLLVVPRRHYVT 188

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQ 282
           +I R ++ NRG  +++ GV IR V+ D++A  N +H+++NG A   F+ RK+  ++ ++ 
Sbjct: 189 SIIRPSFANRGPTYTEYGVQIRCVRPDQTAATNTMHYLSNGGATLRFAWRKNEYMIPVVM 248

Query: 283 SLHEEGIHTQHDSKVFFGQIFKE--------KLQYDLRHL-------------------- 314
            L  + + +  D  +F G I K+        +++  LR                      
Sbjct: 249 VL--KALSSASDRDIFEGIIQKDYDNTFLTDRVELLLRGFKPFKLYTREQCLHFLGSKFR 306

Query: 315 ---------NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
                     ++++  Y++  CIL HL    DK+  L +M  KL+ +V G    D+ DS 
Sbjct: 307 VVLGCPEDWTDIQVGQYLIDRCILVHLQSPQDKYRMLLYMLQKLYSLVSGESCPDNPDSP 366

Query: 366 MLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRAS--------------------- 404
            L E++  G LY Q++K EK     +   + I    R                       
Sbjct: 367 QLHEVLMPGFLYGQIIK-EKLDECLIAATAQIRQDLRRQVSSANVSDDKYVNKVIQRTNF 425

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            I   +  FLATGN+ +   S L L QA+GF IMAE +N  RY++HFR +HRG++F E++
Sbjct: 426 DIGQKLNYFLATGNLVS--PSGLDLQQATGFTIMAEKLNFYRYLAHFRCIHRGAFFAELK 483

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           ++  R+L  +AWGF+CPVHTPDG PCGLLNHL+ +C+++     +  + IPS+L SLGM+
Sbjct: 484 TTAVRKLLPEAWGFLCPVHTPDGAPCGLLNHLSRSCKVTTENLEESASNIPSLLSSLGMI 543

Query: 525 PLTPVIQSIPEQ-ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLK 582
              P + ++  + ++ + LDGRI+G+   +    +   LR+ K      +P +LEI  + 
Sbjct: 544 --QPFVNTVDRRNSVAIQLDGRIIGWASTEDVKHMAEALRIWKTEKLHDVPLNLEIGLV- 600

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
            P    G YPGLYLFT   RM+RPV  LA G ++ +G+FEQV+MD+    KE   GI+TH
Sbjct: 601 -PSSKGGQYPGLYLFTSRARMMRPVKYLANGKLDHLGSFEQVYMDVACVPKEIEKGISTH 659

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E + T+ LS +AN+ P  D NQSPRNMYQCQM KQTMGTP      +   KLYR+Q   
Sbjct: 660 VEYTPTNVLSVVANMTPFSDFNQSPRNMYQCQMAKQTMGTPSTAIMRRTDNKLYRIQNGQ 719

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
           +P  RP  +    MDNFP G NAIVAV+SYTGYDMEDAMI+NKS++ERGF +G ++KS  
Sbjct: 720 TPIVRPKLHAHYGMDNFPQGANAIVAVLSYTGYDMEDAMIINKSAHERGFGYGTVYKSQI 779

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
           ++L              G   S     + FG+                    G D A + 
Sbjct: 780 VDLRE----------MRGASKSRSAPTLHFGL--------------------GVD-AKQE 808

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
             + L  DG++  G K+   DP+ +Y  E+  R +  +Y G E+  ++ +R+    ++GG
Sbjct: 809 WRETLDDDGIIPSGVKVTSGDPICAYIDETTGRTMVEKYKGDEDAYIDEIRLLG--SDGG 866

Query: 883 SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
                  +   RI R+P VGDKF+SR GQKG+ S +W   DLPF++SGL PD++ NPH F
Sbjct: 867 DTELQKIHFKIRIPRSPVVGDKFSSRHGQKGVMSQRWKKIDLPFSESGLQPDVIINPHAF 926

Query: 943 PSRMTIGFL 951
           PSRMTIG  
Sbjct: 927 PSRMTIGMF 935



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            +GYNY+G E MYSGV G    A I+ G V+YQRLRHMV+DK+Q +     D   R P
Sbjct: 975  AGYNYHGNEPMYSGVTGEEFPADIYIGCVYYQRLRHMVNDKYQVRTLGPVDQLTRQP 1031


>gi|151942801|gb|EDN61147.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
 gi|349581826|dbj|GAA26983.1| K7_Rpa135p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1203

 Score =  602 bits (1553), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 372/990 (37%), Positives = 532/990 (53%), Gaps = 137/990 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIA--------PIE 95
           +  F  PP  ++ F L   A  PHI SF+  L EG     L+L V+DI         P+ 
Sbjct: 22  ESRFINPPKDKSAFPLLQEAVQPHIGSFN-ALTEGPDGGLLNLGVKDIGEKVIFDGKPLN 80

Query: 96  FE-------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            E         G  L +++ + +I++P    G       K YP+E+RQ  + Y G   + 
Sbjct: 81  SEDEISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLK 140

Query: 149 VAWSWDGKAGGTF-TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
           + WS +      F  ++ G +P+ML+S RCHL  ++P +L++  E  DE GGYFIV G E
Sbjct: 141 LKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIE 200

Query: 208 KLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF 267
           KL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV+ D+++  NVLH++ +G   F
Sbjct: 201 KLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTF 260

Query: 268 MFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHL----- 314
            FS RK+  L+ ++  L +   HT  D ++F G I          ++L+  LR       
Sbjct: 261 RFSWRKNEYLVPVVMIL-KALCHTS-DREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYP 318

Query: 315 --------------------------NEVEICDYMLTNCILPHL--DDYWDKFLCLSHMT 346
                                     +++E+   +L   +L HL  D   DKF  L  M 
Sbjct: 319 QLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMI 378

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSA 390
            KL+ +V G    D+ D+   QE++ GG LY  +LK++                  G + 
Sbjct: 379 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAI 438

Query: 391 VLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
             K+    +        +I S M  FL+TGN+ +   S L L Q SG+ ++AE IN  R+
Sbjct: 439 NFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRF 496

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS    
Sbjct: 497 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS--TQ 554

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
              +++IPS+L SLG+ P +    + P     V +DG+I+G++  +    +   LR  K+
Sbjct: 555 QSDVSRIPSILYSLGVAPASHTFAAGPS-LCCVQIDGKIIGWVSHEQGKIIADTLRYWKV 613

Query: 568 VGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
            G+   +P  LEI Y+  P    G YPGLYLF G  RMLRPV  L     + +G FEQV+
Sbjct: 614 EGKTPGLPIDLEIGYV--PPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M+I +T +E    + TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +
Sbjct: 672 MNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              ++   KLYRLQT  +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 ALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ ERGF +G ++K+  ++L    N     T + G                         
Sbjct: 792 SADERGFGYGTMYKTEKVDLALNRNRGDPITQHFG------------------------- 826

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                   FG D   K   +KL  DGL Y+G  + E DP+ +Y+ ++ N+     Y   E
Sbjct: 827 --------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSE 878

Query: 866 EMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
              +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP 
Sbjct: 879 PAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPT 933

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 934 IDMPFSETGIQPDIIINPHAFPSRMTIGMF 963



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1002 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 1047


>gi|448079309|ref|XP_004194369.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
 gi|359375791|emb|CCE86373.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
          Length = 1167

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 360/970 (37%), Positives = 522/970 (53%), Gaps = 114/970 (11%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLD--EG--LDLAVEDIAPIEF------EI 98
           +K F  PP ++  +  L+   APHI SF+ + +  EG  L+L V+DI             
Sbjct: 11  EKRFQNPPKEKPTYQMLVDAVAPHIGSFNALTEGPEGGLLNLGVKDIGSKSIFDSNDEGR 70

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            G  L + +    +++P VP         + YP E R+  + Y     + V W  + +  
Sbjct: 71  LGNKLSIRVDSVQLAKPSVPNNDKLSINRRTYPAECRERMTTYRSRLMLKVTWKVNDEEE 130

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
            +  +E G+VPIMLKS RCHL  LT  +L+E  E  DE GGYFIV G EKL+R+LI  RR
Sbjct: 131 VSEIREAGQVPIMLKSNRCHLEKLTSEELVEHREESDELGGYFIVNGIEKLIRMLIVQRR 190

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           NHP+AI R ++ NRG  ++  GV IR V+ D+++  NVLH++ +G+  F FS RK+  L+
Sbjct: 191 NHPMAIIRPSFANRGAAYTKFGVQIRCVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYLV 250

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQI----------------FKEKLQYDLR---------- 312
            +M  L  + +   +D ++F G +                 K   QY+L           
Sbjct: 251 PVMMVL--KALVETNDREIFDGIVGADISNSFLTDRLELLLKTFKQYNLYTKKETLAYLG 308

Query: 313 -----------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
                       ++++E+ + ++   +L HL +  DKF  L  M  KL+ +V G    D+
Sbjct: 309 NKFRVVFGSTPDVSDIEVGEEVIRRIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCCPDN 368

Query: 362 EDSIMLQEIMTGGSLYLQLLKK--EKSGTSAVLK-ESDIYAAFRAS-------------- 404
            D+   QEI+ GG LY  ++K+  E+   S  L+ +SDI      +              
Sbjct: 369 PDATQHQEILLGGFLYGMIIKEKIEEYLQSIRLQIQSDINRGIAVNFKDRKYMSRVFMRI 428

Query: 405 --SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
             +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F E
Sbjct: 429 NENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAE 486

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           ++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+++    +  ++++P+ L  LG
Sbjct: 487 LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKVA--TSAVDVSKVPAALAELG 544

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYL 581
           + P      +       + LDGRI+G+   +    +   LR  K+ G   +P  LEI Y+
Sbjct: 545 VSPAHSY--AAGPGLCCIQLDGRIIGWCTHEQGKIVADTLRFWKVEGTHGVPLELEIGYV 602

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
             P    G YPGLYLF G  RM+RP   L    ++ +G FEQV++D+ +T +E    I +
Sbjct: 603 --PPTHKGQYPGLYLFGGHSRMMRPTKYLPLDKVDIVGPFEQVYLDVAVTPEEIENNIHS 660

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E + T+ LS LANL P  D NQSPRNMYQCQM KQTMGTP +   ++   KLYRLQT 
Sbjct: 661 HVEYAPTNILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRSDNKLYRLQTG 720

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+NKS+ ERGF +G ++K  
Sbjct: 721 QTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVE 780

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            I+L S        T + G                                 FG D   +
Sbjct: 781 KIDLSSSRRRGDPITQHFG---------------------------------FGTDEWPE 807

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
             ++KL  DGL  +G ++ E DP+ +Y+ ++  R     Y   E   +E V++     +G
Sbjct: 808 GWKEKLDADGLPLIGTRVEEGDPIIAYYDDTLGRTKVKTYHSSEMAYIEEVKLLG--DDG 865

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           G      A I YR+ R P +GDKF+SR GQKG+CS KWP  D+PF++SG+ PD++ NPH 
Sbjct: 866 GDHECQQATIKYRVPRAPLIGDKFSSRHGQKGVCSRKWPQIDMPFSESGMQPDVIINPHA 925

Query: 942 FPSRMTIGFL 951
           FPSRMTIG  
Sbjct: 926 FPSRMTIGMF 935



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSGV G  ++A I+ G V+YQRLRHMV+DK+Q +
Sbjct: 973  LKAGYNYHGNEPMYSGVTGEELRADIYIGCVYYQRLRHMVNDKFQVR 1019


>gi|66800165|ref|XP_629008.1| RNA polymerase I, second largest subunit [Dictyostelium discoideum
           AX4]
 gi|74896752|sp|Q54BM1.1|RPA2_DICDI RecName: Full=DNA-directed RNA polymerase I subunit rpa2; AltName:
           Full=DNA-directed RNA polymerase I polypeptide 2;
           Short=RNA polymerase I subunit 2
 gi|60462371|gb|EAL60592.1| RNA polymerase I, second largest subunit [Dictyostelium discoideum
           AX4]
          Length = 1130

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 357/971 (36%), Positives = 521/971 (53%), Gaps = 124/971 (12%)

Query: 62  NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGP 121
           +E L +L  PHI SFDF  D G+DL ++D  P+ FE      K+      +S P      
Sbjct: 2   SEELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVE 61

Query: 122 VGIHFNKYYPTEARQTRSVYSGPFNVTVAW----SWDGKAGGT------------FTKEV 165
             I   K YP E+R+T + Y+ PF   +        D    GT            F  ++
Sbjct: 62  KEI---KLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDL 118

Query: 166 GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
           GR+PIM+KS+ CHL  ++P +LIE  E   E GGYFIV G+EK+VR+L+  + NHP+A+ 
Sbjct: 119 GRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALH 178

Query: 226 RNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK------SMCLLG 279
           R AW NRG  ++  G+ IR V+ D S+  N LH++ +G     F +R+      +  LL 
Sbjct: 179 RKAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLK 238

Query: 280 MMQ---------------------------SLHEE---GIHTQHDSKVFFGQIFKEKLQY 309
            ++                           SL E+    I+TQ +   + G  F+ + Q+
Sbjct: 239 ALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRARTQF 298

Query: 310 DLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQE 369
                N ++I  + +   +  HL +Y DK+  L  M  KL+ +V G    D+ DS   QE
Sbjct: 299 PPSFSN-IKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDSPAFQE 357

Query: 370 IMTGGSLYLQLLKKE-----KSGTSAVLKE--------SDIYAAFRAS-----SIESAMT 411
           ++  G +Y  +LK++     +S  S VLK           +  A +        I    +
Sbjct: 358 VLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVLDKNFKIADRFS 417

Query: 412 NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQL 471
            FLATGN+ +  +S + L Q SGF ++A+ +N +R++SHFR++HRG++F  M+++  R+L
Sbjct: 418 YFLATGNLRS--SSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKTTAIRKL 475

Query: 472 RTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQ--IPSVLVSLGMLPL 526
             ++WGF CPVHTPDG PCGLLNHL++NC ++      P+   AQ  +PS L + GMLP+
Sbjct: 476 MPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTLLPSFLAAHGMLPI 535

Query: 527 TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRP 584
             ++     Q L + LDGR++G I  +    +V  LR L+ +G +  IPK++EI Y    
Sbjct: 536 D-MVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPSIPKTMEISYAPPT 594

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
               G Y G+ LFT   R +RPV+NL +G  E IG  EQ++M+I +   E   G+TTH E
Sbjct: 595 NVENGQYSGISLFTTGARFMRPVVNLTSGQNELIGPQEQLYMEIAVVPHEVIKGVTTHIE 654

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
            S T   S LANL P  D NQSPRNMYQCQM KQTMGTP  ++ ++   KLY++Q    P
Sbjct: 655 TSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKP 714

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
                +      +++P G NA++AVIS TGYDMEDAMI+NKS+YERGF HG ++K+ +I+
Sbjct: 715 IVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYID 774

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANKAL 823
           L+ G + +                                    Q K +FGR +     L
Sbjct: 775 LDQGLSRF-----------------------------------EQKKTFFGRPNTVVDEL 799

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
           +  +  DGL +VG  +   +P Y+Y + S+ R VT  Y GKEE  +E VR+  G   G +
Sbjct: 800 DKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFG-PNGAT 858

Query: 884 VTP---NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
             P   N   +  R  RNP +GDKF+SR GQKG+ S  WP  ++PFT+SG+ PD++ NP+
Sbjct: 859 RDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPN 918

Query: 941 GFPSRMTIGFL 951
            FPSRMTIG L
Sbjct: 919 AFPSRMTIGML 929



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++G+N +G E MYSG  G   + +IFFGV +YQRLRHMV DK+Q +
Sbjct: 968  KAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVR 1013


>gi|255718993|ref|XP_002555777.1| KLTH0G17160p [Lachancea thermotolerans]
 gi|238937161|emb|CAR25340.1| KLTH0G17160p [Lachancea thermotolerans CBS 6340]
          Length = 1197

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 379/1004 (37%), Positives = 538/1004 (53%), Gaps = 131/1004 (13%)

Query: 30  KVLKMILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG---- 83
           KV+K   N  T    +L+   +  F  PP  ++ F L   A  PHI SF+  L EG    
Sbjct: 3   KVVKPPANARTAHFRTLER--ENRFVNPPKDKSAFPLLEEAVQPHIGSFN-ALTEGPDGG 59

Query: 84  -LDLAVEDIA-PIEFE---------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPT 132
            L+ AV+DI   + F+           G  L L++ + +IS+P    G       K +P+
Sbjct: 60  LLNQAVKDIGGKVVFDGTKSDENPNYLGNKLTLSVEQVSISKPVSNDGVSSAVERKVFPS 119

Query: 133 EARQTRSVYSGPFNVTVAWSW-DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
           E+RQ  S Y G   + + W+  DG+   T  ++ G +P+ML+S RCHL  L+P +L++  
Sbjct: 120 ESRQRLSSYRGKLLLKLRWAINDGEESFTEIRDCGGLPVMLQSNRCHLNKLSPNELVKHK 179

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDES 251
           E  DE GGYFI+ G EKL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV+ D++
Sbjct: 180 EESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQT 239

Query: 252 ATNNVLHFVTNGSARFMFSHRKSMCLLG---MMQSLHE-------EGI------------ 289
           +  NVLH++ +G   F FS RK+  L+    ++++L E       +GI            
Sbjct: 240 SQTNVLHYLNDGEVTFRFSWRKNEYLIPVVMILKALCELNDREIFDGIVGSDTSNSFLTD 299

Query: 290 ----------------HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL- 332
                           H +     + G  F+  LQ       + ++ + +L   +L HL 
Sbjct: 300 RLELLLRGHKKKYGELHNRRQVLQYLGDKFRVVLQAS-PDATDFQVGEELLKRIVLVHLG 358

Query: 333 DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVL 392
           D   DK   L  M  KL+ +V G    D+ D+   QE++ GG LY  ++K++       +
Sbjct: 359 DSNEDKSRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNI 418

Query: 393 K---ESDIYAAFRAS----------------SIESAMTNFLATGNVSAGKNSTLQLMQAS 433
           K   +SD+      +                +I S +  FL+TGN+ +   S L L Q S
Sbjct: 419 KLQIQSDVNRGLAVNFKERKYMTRVLMRVNENIGSKLQYFLSTGNLVS--QSGLDLQQVS 476

Query: 434 GFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLL 493
           G+ ++AE IN  R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLL
Sbjct: 477 GYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLL 536

Query: 494 NHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
           NH    C+IS       +++IPS+L SLG+ P +    + P     V LDG+IVG+   +
Sbjct: 537 NHFAHKCKIS--TSQSDVSRIPSLLYSLGVAPASHTFTAGPTMCC-VQLDGKIVGWCSHE 593

Query: 554 IATSLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLA 611
               +   LR  K+ GE   +P  LEI Y+  P    G YPGLYLF G  RM+RPV  L 
Sbjct: 594 QGKIIADTLRFWKVEGETPGLPLDLEIGYV--PPSSRGQYPGLYLFGGHSRMMRPVKYLP 651

Query: 612 AGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMY 671
            G  + +G FEQV+M+I +T KE      TH E + T+ LS LANL P  D NQSPRNMY
Sbjct: 652 LGKEDIVGPFEQVYMNIAVTPKEIQNNTHTHVEFTPTNILSILANLTPFSDFNQSPRNMY 711

Query: 672 QCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
           QCQMGKQTMGTP +   ++   KLYRLQT  +P  +   YD   MDNFP G NA+VAVIS
Sbjct: 712 QCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDEYGMDNFPNGFNAVVAVIS 771

Query: 732 YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
           YTGYDM+DAMI+NKS+ ERG  +G ++K   ++L    +     T + G           
Sbjct: 772 YTGYDMDDAMIINKSADERGLGYGTMYKVEKVDLALNRSRGDPITQHFG----------- 820

Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE 851
                                 FG D   K   DKL  DGL  +G  + E DP+ +++ +
Sbjct: 821 ----------------------FGDDEWPKNWLDKLDDDGLPMIGTYVEEGDPICAFFDD 858

Query: 852 SENRYVTCRYSGKEEMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFAS 907
           + N+     Y   E   +E V +    SS F E  +V+     I YRI+R P +GDKF+S
Sbjct: 859 TLNKTKIKTYHSSEPAYIEEVNLIGDESSKFQELQTVS-----IKYRIRRTPQIGDKFSS 913

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG+CS KWP  D+PF++SG+ PDI+ NPH FPSRMTIG  
Sbjct: 914 RHGQKGVCSRKWPTVDMPFSESGMQPDIIINPHAFPSRMTIGMF 957



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 995  LQAGYNYHGNEPMYSGATGQELRADIYIGVVYYQRLRHMVNDKFQVR 1041


>gi|301622236|ref|XP_002940443.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
           2 [Xenopus (Silurana) tropicalis]
          Length = 1079

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 347/856 (40%), Positives = 480/856 (56%), Gaps = 97/856 (11%)

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           V+WS +G   G   + +G +PIM+KSK C+L +L P QL+E  E   E GGYFI+ G EK
Sbjct: 62  VSWSLNGLQKGIIKQTLGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEK 121

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           ++R+LI  RRN PIA+ R  WKNRG  ++  G+ +R V+ + +A N  LH++ NGS    
Sbjct: 122 VIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVN 181

Query: 269 FSHRKSM------------------------------------CLLGMMQSLHEEGIHTQ 292
           F ++K +                                    C+  M++++ EEG H+Q
Sbjct: 182 FIYQKELFFIPLGFALKALVDYSDYQIFTELIKGKEENSFYRDCMTQMLRAVVEEGCHSQ 241

Query: 293 HDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHV 352
            +   + G+ F+ K  Y      + +  +++++ CI  HL    +KF  L  MT KLF  
Sbjct: 242 KNVLKYLGERFRVKF-YLPDWFTDEQAAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTF 300

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG----------------TSAVLKESD 396
            +     ++ DS+M QE+MT G L L  LK++                   T  +  E+ 
Sbjct: 301 AKDGCMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLGVKVNLDKRAHKYTVDLSTETM 360

Query: 397 IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
           +      S +       LATGN+ +   + L ++Q+SG V++A+ +N +RY+SHFR VHR
Sbjct: 361 MKVFTSTSDLTKTCEYLLATGNLRS--KTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHR 418

Query: 457 GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPS 516
           G+ F +MR++  R+L  ++WGF+CPVHTPDG PCGL+NH+T  C+I        L     
Sbjct: 419 GAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQTSYNTLLP--L 476

Query: 517 VLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKS 575
           +L SLGM P+      +      VMLDG +VG++   IA  LV  LR  K+  EK +P  
Sbjct: 477 LLCSLGMTPVDGTAGKLFADCYPVMLDGAMVGWVEKTIAPGLVSALRNYKVKHEKNVPPW 536

Query: 576 LEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEA 635
            EIV +    K   LYPGL+LFT P RM+RPV NLA G  E +GT EQVF+++ +   + 
Sbjct: 537 TEIVLIPMTGKA-SLYPGLFLFTTPCRMVRPVRNLALGKEELLGTLEQVFLNVAVYEGDI 595

Query: 636 YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
            PG TTH+E      LS +AN IP  D NQSPRNMYQCQMGKQTMG P + ++ +   KL
Sbjct: 596 VPGETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKL 655

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           YRLQTP SP  RP  YD  +MDN+P+GTNAIVAVISYTGYDMEDAM+LNKSS+ERGFAHG
Sbjct: 656 YRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHG 715

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
            ++K+  ++L        ++ +  G D  +                            FG
Sbjct: 716 SVYKTDHVDL--------SKKLKDGEDNLV----------------------------FG 739

Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
             P ++ ++ +L  DGL  VGA L   DP Y Y   +        Y  KE   ++ +++ 
Sbjct: 740 IKPDDERVKGRLDSDGLPAVGAVLQFGDPYYGYLNLNTGESFVAYYKSKENCVIDNIKIC 799

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
           S     G     C  +  RI RNPT+GDKFASR GQKGI S  WP+ED+PFT+SG+VPDI
Sbjct: 800 SNDIGFGKFKSVC--VTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDI 857

Query: 936 VFNPHGFPSRMTIGFL 951
           +FNPHGFPSRMTIG L
Sbjct: 858 LFNPHGFPSRMTIGML 873



 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 4/115 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 914  GYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPVGGR 973

Query: 828  GPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +C+E   + S F E
Sbjct: 974  NVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSTAHVCIECGSLLSPFLE 1026


>gi|449549407|gb|EMD40372.1| hypothetical protein CERSUDRAFT_148338 [Ceriporiopsis subvermispora
           B]
          Length = 1228

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 367/995 (36%), Positives = 540/995 (54%), Gaps = 135/995 (13%)

Query: 49  LTDKNFGKPPDKQ------NEFLLTLGAPHIASFDFMLDEG------------LDLAVED 90
           + ++NF  PP         NEF+     PH+ SF+ + D+             L LA+ D
Sbjct: 20  VREQNFKNPPKDGASVPILNEFV----TPHLESFNALFDDSGLPAGDGDGRGLLSLAIND 75

Query: 91  IAP-IEFEI------------YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQT 137
           I   + F+             +G  L +   +  ++ P VP         K +P EAR+ 
Sbjct: 76  IGERVVFDGKGQIGSESGQSGWGNRLTMWYEQVTVARPMVPEKDRDAKERKVFPAEARER 135

Query: 138 RSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEW 197
            + Y G   V + W  +        ++ G +PIM++S RC+LR+++ A+L++  E P+E+
Sbjct: 136 LTSYRGRMMVKLCWRVNDGPVEVENRDCGLLPIMVRSVRCNLRSMSSAELVKHHEEPEEF 195

Query: 198 GGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVL 257
           GGYFI+ G+E+L+R LI  RR+  IA+ R ++ NRG  ++   V IR V+ D++A  N L
Sbjct: 196 GGYFIINGNERLIRYLILPRRHSVIALVRPSFVNRGPSYTPYAVQIRCVRPDQTAVTNTL 255

Query: 258 HFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--------KLQY 309
           H+++NGSA   FS RK   ++ +M  L  + + +  D ++F G I ++        +++ 
Sbjct: 256 HYLSNGSAMLRFSWRKQEYVIPIMLIL--KALVSASDKEIFEGVIMQDYEDTFLTDRVEL 313

Query: 310 DLRH-----------------------LNEVE------ICDYMLTNCILPHLDDYWDKFL 340
            LR                        LN  E      +  +++   +L HL+   +KF 
Sbjct: 314 LLRSFKMYSLYTGDQCLEYLGDKFRVVLNMPEDWTNKALGAWIIQKLVLVHLESPREKFR 373

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK---EKSGTSAVLKESDI 397
            L  M  KL+ +V     +D+ DS   QE++  GSLY  ++K+   E      +  + D+
Sbjct: 374 MLLFMLRKLYSLVSHSCCVDNPDSPQHQEVLLPGSLYGMIIKERLEEALNNFRIAIQQDV 433

Query: 398 -----------------YAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
                              A     + + M+NFLATGN+ +   S L L QASGF I+AE
Sbjct: 434 NRGEPSVDFFDKRYVKKILARTNFDVGARMSNFLATGNLVS--PSGLDLQQASGFTIVAE 491

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
            +N  RY+SHFR++HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL+  C
Sbjct: 492 KLNWQRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRTC 551

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
           +I     S V   IP++L + GM  +  P +     + L V LDGR++G+    +   L 
Sbjct: 552 RIVTSPLSVV--HIPALLAAHGMTQVFAPSVDG--RRNLCVQLDGRLIGWAPQAVLRQLA 607

Query: 560 PKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWI 618
             LR+ K  G+  +P  LEI ++  P    G YPGLYLF+   RM+RPV  +A G  + I
Sbjct: 608 TSLRIWKTEGKHSVPLDLEIGFV--PVSKGGQYPGLYLFSSRARMMRPVKFVANGRDDQI 665

Query: 619 GTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           G+FEQV+MDI  T  E   G+++H E S T+FLS LANL P  D NQSPRN+YQCQMGKQ
Sbjct: 666 GSFEQVYMDIACTPAEIEDGVSSHVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQ 725

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
           +MGTP    R++   KLYRLQT  SP  RP  ++T  MD+FP GTNA+VAVISYTGYDME
Sbjct: 726 SMGTPATAIRHRTDNKLYRLQTGQSPVVRPALHNTYGMDSFPNGTNAVVAVISYTGYDME 785

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELES--GYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           DAMILNKS++ERGF +G ++K+  ++L+   G   +   T++             FG+ +
Sbjct: 786 DAMILNKSAHERGFGYGTVYKAYTVDLKDMPGVRTHSVPTLH-------------FGLGY 832

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY 856
             R        W  K               L  DGL +VG +LN  DP+ +Y  ++  R 
Sbjct: 833 EIRTEEGPKQHWCCK--------------FLDRDGLPFVGTRLNPGDPIAAYIDDTTGRT 878

Query: 857 VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
              +Y G E   V+ VR+    ++ G        +  RI R P +GDKF+SR GQKG+CS
Sbjct: 879 KFVKYKGDEIAYVDSVRLLG--SDAGDSELQKINLTLRITRAPVIGDKFSSRHGQKGVCS 936

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            KWPA D+PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 937 QKWPAIDMPFSESGMQPDVIINPHAFPSRMTIGML 971



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            L +GYNYYG+E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 1009 LAAGYNYYGSEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDPVTR 1065


>gi|17506623|ref|NP_492476.1| Protein RPOA-2 [Caenorhabditis elegans]
 gi|3875865|emb|CAA99827.1| Protein RPOA-2 [Caenorhabditis elegans]
          Length = 1127

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 348/946 (36%), Positives = 505/946 (53%), Gaps = 109/946 (11%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY-GKTLKLNIVKAAISEPKVPAGP-VGIH 125
           + + H+ SFDF++ +G   A + +   +F +  G  + +    A + +P +  G  +   
Sbjct: 5   IASYHVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSD 64

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
                P E RQ    Y+G   V +    +G         +G+VPIML+S+ CHLR ++  
Sbjct: 65  TLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRK 124

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           +L+  GE P E GGYFIV G EK++RLLI NRRN PIAI R  +K +G LFS+ GV +RS
Sbjct: 125 ELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRS 184

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRK-------------------------------- 273
           VK + +A    LH++  G+ +     R+                                
Sbjct: 185 VKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQ 244

Query: 274 ----SMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-NEVEICDYMLTNCI 328
               S C+L M+    EE I  Q  +    G  F+  +   +    +++E   +++  C+
Sbjct: 245 DQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECV 304

Query: 329 LPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGT 388
           L HLD   +KF  L++MT KL  +V+G    ++ D+   QE    G + L +L++     
Sbjct: 305 LIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENI 364

Query: 389 SAVLKESDIYAAFR------------------ASSIESAMTNFLATGNVSAGKNSTLQLM 430
             +++    Y + R                     I   M  FLATGN+       L L 
Sbjct: 365 IGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVT--RVGLALQ 422

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SGF ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG PC
Sbjct: 423 QESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPC 482

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM-VMLDGRIVGY 549
           GLLNH+T +C+I   +     + +PS+L  LGM     V  + P + L  V+++GR +GY
Sbjct: 483 GLLNHVTASCRIVTDLSDN--SNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGY 540

Query: 550 ILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGL---YPGLYLFTGPGRMLR 605
           +    A S+   LR  K+  + +IP + EI  ++R      +   YPG+Y+ +  GR++R
Sbjct: 541 VPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIR 600

Query: 606 PVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
           PV NLA   +E IGTFEQV++ + +  +EA PG+T H+EL  +   S   NLIP PD NQ
Sbjct: 601 PVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQ 660

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRN+YQCQMGKQTMGT    W  +   K+YRLQ P  P  +   Y+  +MD +P+GTNA
Sbjct: 661 SPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNA 720

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
            VAVISYTGYDMEDAM +NK+SY+RGFAHG + K   I L                    
Sbjct: 721 CVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL-------------------- 760

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM 845
                             V+++ + K  F R+P  +     +GPDGL   G +    +  
Sbjct: 761 ------------------VTER-ERKTIFYRNPREEI--KTVGPDGLPIPGRRYFLDEVY 799

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
           Y  +      + T ++   E     +VR+     EG S   + A I +RI+RNP +GDKF
Sbjct: 800 YVTFNMETGDFRTHKFHYAEPAYCGLVRIVEQ-GEGDSGAKH-ALIQWRIERNPIIGDKF 857

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ASR GQKGI S  WP E LPF+++G+VPDI+FNPHGFPSRMTIG +
Sbjct: 858 ASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMM 903



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 42/53 (79%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           ++GYNYYG ET YSGVDG  M+ QIFFG+V+YQRLRHM++DK+Q +     DP
Sbjct: 942 KAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDP 994


>gi|254582667|ref|XP_002499065.1| ZYRO0E02838p [Zygosaccharomyces rouxii]
 gi|238942639|emb|CAR30810.1| ZYRO0E02838p [Zygosaccharomyces rouxii]
          Length = 1196

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 367/984 (37%), Positives = 532/984 (54%), Gaps = 132/984 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLD--EG--LDLAVEDIAPIEFEIY----- 99
           +  F  PP  ++ + L   A  PHI SF+ + +  EG  L+  ++DI   E  I+     
Sbjct: 22  ESRFQNPPKDKSAYPLLYEAVQPHIGSFNALTEGPEGGLLNQGIKDIG--EKVIFDGKRS 79

Query: 100 -----GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
                G  L +++ +A+I++P    G       + +P+EARQ  S Y G   + + W  +
Sbjct: 80  DSIQLGNRLSVSVEQASITKPMFNDGVASGVERRVFPSEARQRLSSYKGKLVIKLRWEVN 139

Query: 155 -GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
            G+   T  ++ G VPIML+S RCHL N+ P++L++  E  DE+GGYFI+ G EKL+R+L
Sbjct: 140 NGEETFTEVRDCGAVPIMLQSNRCHLYNMPPSELVKHKEESDEFGGYFIINGIEKLIRML 199

Query: 214 INNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK 273
           I  RRNHP+AI R ++ NRG  +S  GV IRSV+ D+++  NVLH++ +G   F FS RK
Sbjct: 200 IVQRRNHPMAIIRPSFANRGAAYSQFGVQIRSVRPDQTSQTNVLHYLHDGQVTFRFSWRK 259

Query: 274 SMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHL--------NEV 317
           +  L+ ++  +  + +    D ++F G I          ++L+  LR          N  
Sbjct: 260 NEYLIPVVMII--KALCDISDREIFDGIIGPDLSNSFLTDRLELLLRGFKKRYPQLRNRT 317

Query: 318 EICDYM-----------------------LTNCILPHL--DDYWDKFLCLSHMTCKLFHV 352
           ++  Y+                       L   +L HL  D   DK   L  M  KL+ +
Sbjct: 318 QVLQYLGDKFRIVFQAPPDKSDLDVGKEVLHRIVLVHLNGDTNEDKCRLLLFMIRKLYSL 377

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLK-KEKSGTSAVLKE--SDIYAAFRAS----- 404
           V G    D+ D+   QE++ GG LY  +LK K      +++ +  +DI     A+     
Sbjct: 378 VAGACSPDNPDATQHQEVLLGGFLYGMILKEKVDEYMQSIIAQIRTDINRGIPANFKDRK 437

Query: 405 -----------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRA 453
                      +I S M  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR 
Sbjct: 438 YMTRVLMRVNDNIGSKMQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRM 495

Query: 454 VHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
           VHRGS+F +++++  R+L  ++WGF+CPVHTPDG PCGLLNH    C+IS       ++Q
Sbjct: 496 VHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHFAHKCRIS--TKQSDVSQ 553

Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-- 571
           IPS+L SLG+ P +    + P     V +DG+IVG+   +    +   LR+ K+ G+   
Sbjct: 554 IPSILYSLGVSPASQAFAAGPS-LCCVQIDGKIVGWTSHEQGRIIADTLRLWKVEGKTPG 612

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
           +P  LEI Y+  P    G YPGLY+F G  RM+RPV  L     + +G FEQV+M+I +T
Sbjct: 613 LPLDLEIGYV--PLSSRGQYPGLYIFGGHSRMMRPVRYLPLDKEDIVGPFEQVYMNIAVT 670

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            +E    + TH E + T+ LS LANL P  D NQSPRNMYQCQM KQTMGTP +   ++ 
Sbjct: 671 PQELQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRS 730

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             KLYRLQ+  +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NKS+ ERG
Sbjct: 731 DNKLYRLQSGQTPVVKANLYDDYGMDNFPNGINAVVAVISYTGYDMDDAMIINKSADERG 790

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           FA+G ++K+  ++L                                  L     D     
Sbjct: 791 FAYGTMYKTEKVDLS---------------------------------LNRSRGDPISQH 817

Query: 812 DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEV 871
             FG D   K   +KL  DGL ++G  + E DP+ +Y+ ++ NR     Y   E   +E 
Sbjct: 818 FGFGNDEWPKEWLEKLDEDGLPFIGTYVEEGDPIVAYFDDTLNRTKVKTYHSTEPAYIEE 877

Query: 872 VRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
           V +    S+   E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP  D+PF+
Sbjct: 878 VNLIGDESNKLQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTVDMPFS 932

Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
           ++G+ PD++ NPH FPSRMTIG  
Sbjct: 933 ETGIQPDVIINPHAFPSRMTIGMF 956



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+SGYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 994  LKSGYNYHGNEPMYSGASGEELRADIYVGVVYYQRLRHMVNDKFQVR 1040


>gi|401623208|gb|EJS41314.1| rpa135p [Saccharomyces arboricola H-6]
          Length = 1203

 Score =  597 bits (1538), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 369/990 (37%), Positives = 532/990 (53%), Gaps = 137/990 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIA--------PIE 95
           +  F  PP  ++ F L   A  PHI SF+  L EG     L+L V DI         P+ 
Sbjct: 22  ESRFINPPKDKSAFPLLEEAVQPHIGSFN-ALTEGPDGGLLNLGVNDIGEKVIFDGKPLN 80

Query: 96  FE-------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            E         G  L +++ + +I++P    G       K YP+E+RQ  + Y G   + 
Sbjct: 81  SENEISNSGYLGNKLSISVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLK 140

Query: 149 VAWSWDGKAGGTF-TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
           + WS +      F  ++ G +P+ML+S RCHL  ++P +L++  E  DE GGYFIV G E
Sbjct: 141 LKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIE 200

Query: 208 KLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF 267
           KL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV+ D+++ +NVLH++ +G   F
Sbjct: 201 KLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQSNVLHYLNDGQVTF 260

Query: 268 MFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHL----- 314
            FS RK+  L+ ++  L +   HT  D ++F G I          ++L+  LR       
Sbjct: 261 RFSWRKNEYLVPVVMIL-KALCHTS-DREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYP 318

Query: 315 --------------------------NEVEICDYMLTNCILPHL--DDYWDKFLCLSHMT 346
                                     +++E+   +L   +L HL  D   DKF  +  M 
Sbjct: 319 QLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGNQDKFRMMLFMI 378

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSA 390
            KL+ +V G    D+ D+   QE++ GG LY  +LK++                  G + 
Sbjct: 379 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDITRGMAI 438

Query: 391 VLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
             K+    +        +I S M  FL+TGN+ +   S L L Q SG+ ++AE IN  R+
Sbjct: 439 NFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRF 496

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS    
Sbjct: 497 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS--TQ 554

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
              +++IPS+L SLG+ P +    + P     V +DG+++G++  +    +   LR  K+
Sbjct: 555 QSDVSKIPSILYSLGVAPASHTFAAGPS-LCCVQIDGKVIGWVSHEQGMIIADTLRYWKV 613

Query: 568 VGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
            G+   +P  LEI Y+  P    G YPGLYLF G  RMLRPV  L     + +G FEQV+
Sbjct: 614 EGKTPGLPVDLEIGYV--PPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M+I +T +E    + TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +
Sbjct: 672 MNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              ++   KLYRLQT  +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 ALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ ERGF +G ++K+  ++L    +     T + G                         
Sbjct: 792 SADERGFGYGTMYKTEKVDLALNRSRGDPITQHFG------------------------- 826

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                   FG D   K   +KL  DGL Y+G  + E DP+ +Y+ ++ N+     Y   E
Sbjct: 827 --------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSE 878

Query: 866 EMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
              +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP 
Sbjct: 879 PAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRLPQIGDKFSSRHGQKGVCSRKWPT 933

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 934 IDMPFSETGIQPDIIINPHAFPSRMTIGMF 963



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1002 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 1047


>gi|156845523|ref|XP_001645652.1| hypothetical protein Kpol_541p37 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116318|gb|EDO17794.1| hypothetical protein Kpol_541p37 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1204

 Score =  597 bits (1538), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 372/990 (37%), Positives = 530/990 (53%), Gaps = 137/990 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEGLD-----LAVEDIAP---------- 93
           +  F  PP  ++ + L   A  PHI SF+  L EG D      A++DI            
Sbjct: 22  ESRFINPPKDKSAYPLLQEAVQPHIGSFN-ALTEGSDGGLLSEAIKDIGEKVIFDGKSNG 80

Query: 94  -----IEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
                I     G  L ++I + +I++P    G       K+YP+EARQ  + Y G   + 
Sbjct: 81  ADEENINEGYLGNKLSISIEQVSIAKPTSNDGVSSAVERKFYPSEARQRLTSYRGKLLMK 140

Query: 149 VAWSW-DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
           + WS  DG+   T  ++ G +PIML+S RCHL  L+P  L++R E  DE GGYFIV G E
Sbjct: 141 LKWSVNDGEEVLTDMRDGGGLPIMLQSNRCHLNKLSPYDLVQRKEESDELGGYFIVNGIE 200

Query: 208 KLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF 267
           KL+R+LI  RRNHP+AI R ++ NRG  ++  G+ IRSV+ D+++  NVLH++ +G   F
Sbjct: 201 KLIRMLIVQRRNHPMAIIRPSFANRGASYTQYGIQIRSVRNDQTSQTNVLHYLNDGQVTF 260

Query: 268 MFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHL----- 314
            FS RK+  L+  +  L  + +    D ++F G I          ++L+  LR       
Sbjct: 261 RFSWRKNEYLIPAVMIL--KALCDTSDREIFDGIIGSDIKNSFLTDRLELLLRGFKKRYP 318

Query: 315 ---NEVEICDYM-----------------------LTNCILPHLD--DYWDKFLCLSHMT 346
              N  ++  Y+                       L   +L HL   +  DK   L  M 
Sbjct: 319 QLQNRTQVLQYIGDKFRVVFQASPDKSDYDVGQEVLNRIVLVHLGTGNNEDKSRMLMFMI 378

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSA 390
            KL+ +V G    D+ D+   QE++ GG LY  +LK++                  G + 
Sbjct: 379 RKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMILKEKMDEYLQSIIAQIRADINRGMAI 438

Query: 391 VLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
             K+    +        +I S +  FL+TGN+ +   S L L Q SG+ ++AE IN  R+
Sbjct: 439 NFKDRKYMSRVLMRVNENIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRF 496

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS  I 
Sbjct: 497 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIST-IQ 555

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
           S V ++IP +L SLG+ P +  + + P     V LDG+IVG++       +   LR  K+
Sbjct: 556 SDV-SKIPELLYSLGVTPASQTVAAGPSLCC-VQLDGKIVGWVSHDEGKIVADTLRFWKV 613

Query: 568 VGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
            G+   +P  LEI Y+  P    G YPGLY+F G  RM+RPV  L  G  + +G FEQV+
Sbjct: 614 EGKTPGLPLDLEIGYV--PPSSSGQYPGLYIFGGHSRMMRPVRYLPLGKEDIVGPFEQVY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M+I +T +E    I +H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +
Sbjct: 672 MNIAVTPQEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              ++   KLYRLQ+  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 ALCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ ERGF +G ++K   ++L    +     T + G                         
Sbjct: 792 SADERGFGYGTMYKVEKVDLSMNRSRGDPITQHFG------------------------- 826

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                   FG D   K   +KL  DGL Y+G  + E DP+ +Y+ ++ N+     Y   E
Sbjct: 827 --------FGPDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSE 878

Query: 866 EMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
              +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP 
Sbjct: 879 PAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPT 933

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 934 IDMPFSETGIQPDVIINPHAFPSRMTIGMF 963



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1001 LKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVR 1047


>gi|365757915|gb|EHM99785.1| Rpa135p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
           VIN7]
          Length = 1203

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 369/989 (37%), Positives = 529/989 (53%), Gaps = 135/989 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIA--------PIE 95
           +  F  PP  ++ F L   A  PHI SF+  L EG     L+L  +DI         P+ 
Sbjct: 22  ESRFINPPKDKSAFPLLEEAVQPHIGSFN-ALTEGPDGGLLNLGAKDIGEKVIFDGKPLN 80

Query: 96  FE-------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            E         G  L +++ + +I++     G       K YP+E+RQ  + Y G   + 
Sbjct: 81  SEDETSNSSYLGNKLSVSVEQVSITKAMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLK 140

Query: 149 VAWSWDGKAGGTF-TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
           + WS +      F  ++ G +P+ML+S RCHL  ++P +L++  E  DE GGYFIV G E
Sbjct: 141 LKWSINNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIE 200

Query: 208 KLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF 267
           KL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV++D+++  NVLH++ +G   F
Sbjct: 201 KLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRQDQTSQTNVLHYLNDGQVTF 260

Query: 268 MFSHRKS-------MCLLGMMQSLHEE---GI--------------------------HT 291
            FS RK+       M L  +  +   E   GI                            
Sbjct: 261 RFSWRKNEYLVPAVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPQL 320

Query: 292 QHDSKV--FFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCLSHMTC 347
           Q+ ++V  + G  F+   Q    H +++E+   +L   +L HL  +   DKF  L  M  
Sbjct: 321 QNRTQVLQYLGDKFRVVFQASPDH-SDLEVGQEVLDRIVLVHLGKNGNQDKFRMLLFMIR 379

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAV 391
           KL+ +V G    D+ D+   QE++ GG LY  +LK++                  G +  
Sbjct: 380 KLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAIN 439

Query: 392 LKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
            K+    +        +I S M  FL+TGN+ +   S L L Q SG+ ++AE IN  R++
Sbjct: 440 FKDKRYMSKVLMRVNENIGSKMQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFI 497

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
           SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS     
Sbjct: 498 SHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS--TEQ 555

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
             +++IPS+L SLG+ P +    + P     V +DG+I+G+I  +    +   LR  K+ 
Sbjct: 556 LDVSKIPSILYSLGVAPASHTFAAGPS-LCCVQIDGKIIGWISHEQGKIIADTLRYWKVE 614

Query: 569 GEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
           G+   +P  LEI Y+  P    G YPGLYLF G  RMLRPV  L     + +G FEQV+M
Sbjct: 615 GKTPGLPVDLEIGYV--PPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYM 672

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
           +I +T +E    + TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP + 
Sbjct: 673 NIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVA 732

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
             ++   KLYRLQT  +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NKS
Sbjct: 733 LCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKS 792

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           + ERGF +G ++K+  ++L    +     T + G                          
Sbjct: 793 ADERGFGYGTMYKTEKVDLALNRSRGDPITQHFG-------------------------- 826

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEE 866
                  FG D   K   +KL  DGL Y+G  + E DP+ +Y+ ++ N+     Y   E 
Sbjct: 827 -------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEP 879

Query: 867 MCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
             +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP  
Sbjct: 880 AYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTI 934

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 935 DMPFSETGIQPDIIINPHAFPSRMTIGMF 963



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV DK+Q +
Sbjct: 1002 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVDDKFQVR 1047


>gi|444320617|ref|XP_004180965.1| hypothetical protein TBLA_0E03910 [Tetrapisispora blattae CBS 6284]
 gi|387514008|emb|CCH61446.1| hypothetical protein TBLA_0E03910 [Tetrapisispora blattae CBS 6284]
          Length = 1204

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 368/993 (37%), Positives = 528/993 (53%), Gaps = 141/993 (14%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDI------------ 91
           +  F  PP  ++ + L   A  PHI SF+  L EG     L+ A++DI            
Sbjct: 22  ENRFINPPKDKSAYPLLHEAIEPHIGSFN-ALTEGPDGGLLNHAIKDIGEKVIFDAKTLN 80

Query: 92  APIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAW 151
           +       G  L +++ + +I++P    G       K YPTE RQ  S Y G   + + W
Sbjct: 81  SSTSSNYLGNKLSVSVEQVSITKPSSNDGVTSAVERKVYPTETRQRLSTYKGKLLLKLKW 140

Query: 152 SW-DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           S  DG+   +  K+ G +PIML+S RCHL NL+P +L+E+ E  DE+GGYFIV G EKL+
Sbjct: 141 SVNDGEETFSELKDCGGLPIMLQSNRCHLNNLSPYELVEKKEESDEFGGYFIVNGIEKLI 200

Query: 211 RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFS 270
           R+LI  RRNHP+AI R ++ NRG  +S  G+ +RSV+ D+++  NVLH++ +G   F FS
Sbjct: 201 RMLIVQRRNHPMAIIRPSFANRGASYSPYGIQLRSVRPDQTSQTNVLHYLNDGQVTFRFS 260

Query: 271 HRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHL-------- 314
            RK+  L+ ++  L  + +    D ++F G +          ++L+  LR          
Sbjct: 261 WRKNEYLVPVIMIL--KALVDISDREIFDGIVGDDVKNSFLTDRLELLLRGFKNRYPQLH 318

Query: 315 NEVEICDYM-----------------------LTNCILPHL-------DDYWDKFLCLSH 344
           N  ++  Y+                       L   +L HL       +   DK   L  
Sbjct: 319 NRTQVLQYLGDKFRVVFQSSPDKSDYEVGKEVLNRIVLVHLGNSSIENESNSDKVRLLLF 378

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRAS 404
           M  KL+ +V G    D+ D+   QE++ GG LY  ++K++       L+  +I A  RA 
Sbjct: 379 MIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIIKEK---IDEYLQ--NILAQVRAD 433

Query: 405 ------------------------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
                                   +I S +  FL+TGN+ +   S L L Q SG+ ++AE
Sbjct: 434 INRGLAINFSDRKYMTRVLMRVNDNIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAE 491

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
            IN  R+++HFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C
Sbjct: 492 KINFHRFLAHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKC 551

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
           +IS       +++IP++L SLG+ P +    + P     V LDG+IVG++  +    +  
Sbjct: 552 RIS--TTQSDVSKIPAILYSLGVSPASQTYAAGPS-LCCVQLDGKIVGWVSHEQGKIVAD 608

Query: 561 KLRMLKIVG--EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWI 618
            LR  K+ G  + +P  LEI Y+  P    G YPGL+LF G  RM+RPV  L     + +
Sbjct: 609 TLRFWKVEGKTDGLPLDLEIGYV--PPSSKGQYPGLFLFAGHSRMMRPVRYLPLDKEDIV 666

Query: 619 GTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           G FEQ +M+I +T +E    I TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQ
Sbjct: 667 GPFEQTYMNIAVTPQEIQNNIHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQ 726

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
           TMGTP +   ++   KLYRLQ+  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+
Sbjct: 727 TMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDEYGMDNFPNGTNAVVAVISYTGYDMD 786

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DAMI+NKS+ ERGF +G ++K   ++L    +     T +SG                  
Sbjct: 787 DAMIINKSADERGFGYGTMYKVEKVDLSLNRSRGDPITQHSG------------------ 828

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
                          FG D   K   +KL  DGL Y+G  + E DP+ +Y+ E+ NR   
Sbjct: 829 ---------------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDETTNRTKI 873

Query: 859 CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
             Y   E   +E V +    +       N   I +RI+R P +GDKF+SR GQKG+CS K
Sbjct: 874 KTYHSSEPGYIEEVNLIGDESNKSQEIQNIT-IKFRIRRTPQIGDKFSSRHGQKGVCSRK 932

Query: 919 WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           WP  D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 933 WPTIDMPFSETGIQPDIIINPHAFPSRMTIGMF 965



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L +GYNY+G E MYSGV G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1003 LSAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVR 1049


>gi|367010772|ref|XP_003679887.1| hypothetical protein TDEL_0B05470 [Torulaspora delbrueckii]
 gi|359747545|emb|CCE90676.1| hypothetical protein TDEL_0B05470 [Torulaspora delbrueckii]
          Length = 1196

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 371/986 (37%), Positives = 529/986 (53%), Gaps = 135/986 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIAPIEF------- 96
           +  F  PP  ++ + L   A  PHI SF+  L EG     L+ AV+DI            
Sbjct: 21  ESRFINPPKDKSAYPLLQEAVQPHIGSFN-ALTEGPDGGLLNQAVKDIGEKVIFDGKSNS 79

Query: 97  -EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDG 155
            +  G  L L++ + +I++P    G       K YP EARQ  S Y G   + + WS + 
Sbjct: 80  DDFLGNKLSLSVEQVSITKPMSNDGVTSAVERKNYPAEARQRLSSYRGKLMLKLKWSVND 139

Query: 156 KAGGTFT--KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
                FT  ++ G +PIML+S RCHL  L+PA+L++  E  DE GGYFIV G EKL+R+L
Sbjct: 140 GNDEVFTEVRDCGGLPIMLQSNRCHLNKLSPAELVQCKEESDEVGGYFIVNGIEKLIRML 199

Query: 214 INNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK 273
           I  RRNHP+AI R ++ NRG  +S  G+ IR V+ D+++  NVLH++ +G   F FS RK
Sbjct: 200 IVQRRNHPMAIVRPSFANRGASYSQYGIQIRCVRPDQTSQTNVLHYLNDGQVTFRFSWRK 259

Query: 274 SMCLLGMMQSLHEEGIHTQHDSKVFFGQI-------------------FKEK-------- 306
           +  L+ ++  L  + +    D ++F G I                   F+++        
Sbjct: 260 NEYLVPVIMIL--KALCDTSDREIFDGIIGSDTKNSFLTDRLELLLTGFRKRYPQLKNRR 317

Query: 307 --LQY---DLRHL-------NEVEICDYMLTNCILPHL--DDYWDKFLCLSHMTCKLFHV 352
             LQY     R +       ++ E+   +L   +L HL  +   DKF  +  M  KL+ +
Sbjct: 318 QILQYLGDKFRVVFQASPDKSDYEVGQEVLDRIVLVHLNGESNKDKFFMMLFMIRKLYSL 377

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAVLKESD 396
           V G    D+ D+   QE++ GG LY  ++K++                  G S   K+  
Sbjct: 378 VAGECCPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIVAQIRTDINRGLSTNFKDRK 437

Query: 397 IYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRA 453
             +        +I S +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR 
Sbjct: 438 YVSRVLMRVNENIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRM 495

Query: 454 VHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
           VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS       +++
Sbjct: 496 VHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS--TKQSDVSK 553

Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALM--VMLDGRIVGYILDQIATSLVPKLRMLKIVGEK 571
           IPS+L SLG   ++P  Q+    A +  V LDGRI+G++  +    +   LR  K+ G+ 
Sbjct: 554 IPSILFSLG---VSPASQTFAAGASLCCVQLDGRIIGWVSHEQGKIIADTLRFWKVEGKT 610

Query: 572 --IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
             +P  LEI Y+  P    G YPGLY+F G  RM+RPV  L     + +G FEQV+M+I 
Sbjct: 611 AGLPLDLEIGYV--PPSTRGQYPGLYIFGGRSRMMRPVRYLPLDKEDIVGPFEQVYMNIA 668

Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
           +T +E    + TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   +
Sbjct: 669 VTPQELQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCH 728

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +   KLYRLQT  +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NKS+ E
Sbjct: 729 RSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADE 788

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           RGF +G ++K   I+L                                  L     D   
Sbjct: 789 RGFGYGTMYKVEKIDLS---------------------------------LNRSRGDPIS 815

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
               FG D   K   +KL  DGL Y+G  + E DP+ +Y+ ++ N+     Y   E   +
Sbjct: 816 QHFGFGTDEWPKEWMEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYI 875

Query: 870 EVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
           E V +    S+   E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP  D+P
Sbjct: 876 EEVNLIGDESNKLPELQTVS-----IKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTIDMP 930

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F+++G+ PD++ NPH FPSRMTIG  
Sbjct: 931 FSETGIQPDVIINPHAFPSRMTIGMF 956



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNY+G E MYSGV G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 996  AGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVR 1040


>gi|410730401|ref|XP_003671380.2| hypothetical protein NDAI_0G03600 [Naumovozyma dairenensis CBS 421]
 gi|401780198|emb|CCD26137.2| hypothetical protein NDAI_0G03600 [Naumovozyma dairenensis CBS 421]
          Length = 1204

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 360/990 (36%), Positives = 527/990 (53%), Gaps = 136/990 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLD--------------------EGLDLAV 88
           +  F  PP  ++ F L   A  PHI SF+ + +                    +G  L  
Sbjct: 22  ESRFINPPKDKSAFPLLQEAVEPHIGSFNALTEGPDGGLLNQGVKDIGEKVIFDGRSLDN 81

Query: 89  EDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            DI  I+    G  L L++ + +I++P    G       K +P+E RQ  S Y G   + 
Sbjct: 82  NDIDTIKEAYLGNKLSLSVEQVSIAKPMSNDGVSSGVERKVFPSETRQRLSSYKGKLMLK 141

Query: 149 VAWSWD-GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
           + WS + G+   +  ++ G +PIML+S RCHL  L+P  L++  E  DE GGYFI+ G E
Sbjct: 142 LKWSVNNGEEVYSEVRDCGGLPIMLQSNRCHLNKLSPYDLVQHKEESDEMGGYFIINGIE 201

Query: 208 KLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF 267
           KL+R+LI  RRNHP+AI R ++ NRG  +S  G+ +RSV+ D+++  NVLH++ +G   F
Sbjct: 202 KLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQLRSVRPDQTSQTNVLHYLNDGQVTF 261

Query: 268 MFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHL----- 314
            FS RK+  L+ ++  L  + +    D ++F G I          ++L+  LR       
Sbjct: 262 RFSWRKNEYLVPVVMIL--KALCDTSDREIFDGIIGSDLKDSFLTDRLELLLRGFKKRYP 319

Query: 315 ---NEVEICDYM-----------------------LTNCILPHLD--DYWDKFLCLSHMT 346
              N  ++  Y+                       +   +L HL   +  DKF  L  M 
Sbjct: 320 TLQNRTQVLQYLGDKFRVAFQASPDKSDYEVGQELIDRIVLVHLGKGNNQDKFNMLLFMI 379

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSA 390
            KL+ +V G    D+ D+   QE++ GG LY  ++K++                  G + 
Sbjct: 380 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNIVAQIRTDSNRGLAI 439

Query: 391 VLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
             K+    A        +I S +  FL+TGN+ +   S L L Q SG+ ++AE IN  R+
Sbjct: 440 NFKDRKYMARVLMRVNDNIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRF 497

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS    
Sbjct: 498 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKIS--TQ 555

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
              ++Q+P++L SLG+ P++ +  + P     V +DG+I+G++  +    +   LR  K+
Sbjct: 556 QSDVSQVPALLYSLGVSPVSHIFAAGPS-LCCVQIDGKIIGWVSHEQGKIIADTLRFWKV 614

Query: 568 VGE--KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
            G+   +P  LEI Y+  P    G YPGLY+F G  RM+RPV  L     + +G FEQV+
Sbjct: 615 EGKVPGLPLDLEIGYV--PPSNSGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVY 672

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M+I +T +E      TH E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +
Sbjct: 673 MNIAVTPQEIENNTHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 732

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              ++   KLYRLQ+  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NK
Sbjct: 733 ALCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINK 792

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ ERGF +G ++K   ++L    +     T + G                         
Sbjct: 793 SADERGFGYGTMYKVEKVDLSLNRSRGDPITQHFG------------------------- 827

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                   FG D   K   DKL  DGL Y+G  + E DP+ +Y+ ++ N+     Y   E
Sbjct: 828 --------FGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSE 879

Query: 866 EMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
              +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP 
Sbjct: 880 PAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPT 934

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 935 IDMPFSETGIQPDVIINPHAFPSRMTIGMF 964



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1002 LKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVR 1048


>gi|366992025|ref|XP_003675778.1| hypothetical protein NCAS_0C04240 [Naumovozyma castellii CBS 4309]
 gi|342301643|emb|CCC69414.1| hypothetical protein NCAS_0C04240 [Naumovozyma castellii CBS 4309]
          Length = 1201

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 366/1009 (36%), Positives = 538/1009 (53%), Gaps = 137/1009 (13%)

Query: 30  KVLKMILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG---- 83
           KV+K   N  T    +L+   +  F  PP  ++ + L   A  PH+ SF+  L EG    
Sbjct: 3   KVIKPPSNARTAHFRTLER--ESRFINPPKDKSAYPLLQEAVEPHVGSFN-ALTEGPDGG 59

Query: 84  -LDLAVEDIA-PIEFE------------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKY 129
            L+  V+DI   + F+              G  L +++ + +I++P    G       K 
Sbjct: 60  LLNQGVKDIGEKVIFDGKTGAVQTGKDSYLGNKLSISVEQVSIAKPTSNDGVSSAVERKV 119

Query: 130 YPTEARQTRSVYSGPFNVTVAWSW-DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
           +P+E+RQ    Y G   + + WS  DG+   T  ++ G +P+ML+S RCHL  L+P +L+
Sbjct: 120 FPSESRQRLVSYKGKLMLKLKWSVNDGEETFTEVRDCGGLPVMLQSNRCHLNKLSPYELV 179

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
           +  E  DE GGYFI+ G EKL+R+LI  RRNHP+AI R ++ NRG  ++  G+ +RSV+ 
Sbjct: 180 QHKEESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFTNRGAAYTQFGIQLRSVRP 239

Query: 249 DESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI------ 302
           D+++  NVLH++ +G   F FS RK+  L+ ++  L  + +    D ++F G I      
Sbjct: 240 DQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMIL--KALCDTSDREIFDGIIGSDLHD 297

Query: 303 --FKEKLQYDLRHL-------------------------------NEVEICDYMLTNCIL 329
               ++L+  LR                                 ++ E+   +L   +L
Sbjct: 298 SFLTDRLELLLRGFKKRYPTLQNRTQVLQFLGDKFRVVFQASPDKSDYEVGQEVLDRIVL 357

Query: 330 PHLD--DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--- 384
            HL   +  DKF  L  M  KL+ +V G    D+ D+   QE++ GG LY  ++K++   
Sbjct: 358 VHLGKGNNEDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMIIKEKIDE 417

Query: 385 -----------KSGTSAVLKESDIYAAFRA-----SSIESAMTNFLATGNVSAGKNSTLQ 428
                       S     +   D     R       +I S +  FL+TGN+ +   S L 
Sbjct: 418 YLQNIIQQIRTDSNRGLAINFKDRKYMSRVLMRVNENIGSKLQYFLSTGNLVS--QSGLD 475

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ ++AE IN  R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 476 LQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 535

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNH    C+IS       ++QIP +L  LG+ P +  I + P Q   V +DG+I+G
Sbjct: 536 PCGLLNHFAHKCKIS--TQQSDVSQIPGLLYQLGVSPASHTIAAGPSQCC-VQIDGKIIG 592

Query: 549 YILDQIATSLVPKLRMLKIVGE--KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           ++  +    +   LR  K+ G+   +P  LEI Y+  P    G YPGLY+F G  RM+RP
Sbjct: 593 WVSHEQGKIIADTLRFWKVEGKIPGLPLDLEIGYV--PPSTRGQYPGLYIFGGHSRMMRP 650

Query: 607 VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           V  L     + +G FEQV+M++ +T +E    + TH E + T+ LS LANL P  D NQS
Sbjct: 651 VRYLPLDKEDIVGPFEQVYMNVAVTPQEIENNVHTHVEFTPTNILSILANLTPFSDFNQS 710

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRNMYQCQMGKQTMGTP +   ++   KLYRLQ+  +P  +   YD   MDNFP GTNA+
Sbjct: 711 PRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAV 770

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K   ++L    +     T + G      
Sbjct: 771 VAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVDLSLNRSRGDPITQHFG------ 824

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY 846
                                      FG D   K   DKL  DGL Y+G  + E DP+ 
Sbjct: 825 ---------------------------FGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPIC 857

Query: 847 SYWKESENRYVTCRYSGKEEMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
           +Y+ ++ N+     Y   E   +E V +    S+ F E  +V+     I YRI+R P +G
Sbjct: 858 AYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIG 912

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG+CS KWP  D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 913 DKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMF 961



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 999  VKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVR 1045


>gi|358057691|dbj|GAA96456.1| hypothetical protein E5Q_03123 [Mixia osmundae IAM 14324]
          Length = 1236

 Score =  593 bits (1530), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 360/973 (36%), Positives = 519/973 (53%), Gaps = 130/973 (13%)

Query: 68  LGAPHIASFDFML---DEG----LDLAVEDIAPIEF-----------------EIYGKTL 103
           L APHI SF+ +    D G    LD+AV D+A                      + G  L
Sbjct: 57  LVAPHIESFNELFISPDLGGVSLLDMAVADVATKTIFDGDRRDKGKAVDRGYHPLLGNRL 116

Query: 104 KLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK 163
            L+I    ++ P  P         +YYP +AR+    Y+G  +  + W+ +G+   +  K
Sbjct: 117 DLSISGFTVASPMQPQSSFMQDNPRYYPADARERMETYAGEMSCKLIWAVNGEPVHSELK 176

Query: 164 EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
           ++G +PIM++S+RCHL+ + PA L++  E  +E GGYFI+ G+EK++R LI  RRNH IA
Sbjct: 177 KLGMLPIMVRSERCHLKGMAPAALVKHREEAEELGGYFIINGNEKIIRFLIVPRRNHVIA 236

Query: 224 IKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL----- 278
           + R ++ NRG L++  GV IRSV+ D+S   + LH++ NG     FS RK+  ++     
Sbjct: 237 LNRPSFGNRGKLYTAYGVQIRSVRPDQSGLTSTLHYLKNGCLHLRFSWRKNEYMIPLMMI 296

Query: 279 ----------------GMMQ-----------------SLHEEGIHTQHDSKVFFGQIFKE 305
                           G+MQ                 +  + G+ +    + + G+ F+ 
Sbjct: 297 LKALLDDEASDKNIYAGIMQNDFANTYYSDRAELLLRTFKDYGLRSGRQCRAYLGKSFRI 356

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
            L       NE  +  ++L   +L HLD+  DKF  L  M  KL+ +V G    D+ DS 
Sbjct: 357 VLGCPEDWSNE-RVGRFLLERIVLVHLDEPADKFRMLLFMVRKLYALVAGDCCADNPDSP 415

Query: 366 MLQEIMTGGSLYLQLLKKE-----------------KSGTSAVLKES----DIYAAFRAS 404
             QEI+  G LY  ++K++                 +    A  +++     I+A   + 
Sbjct: 416 QHQEILMPGFLYATIIKEKLSEYLDAIATQFRIDMRRQAVGATFEDTKWVRSIFAKV-SP 474

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
           +I + ++ FLATGN+ +  +S L L QASGF I+AE +N +R++SHFR VHRG++F E++
Sbjct: 475 NIGTKISTFLATGNLVS--SSGLDLQQASGFTIVAEKLNFLRFISHFRCVHRGAFFAELK 532

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGM 523
           ++  R+L  +AWGF+CPVHTPDG+PCGLLNH    C  +S    +  LA    +L S+GM
Sbjct: 533 TTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHFAHKCLLVSSAAKTDHLA---GLLSSMGM 589

Query: 524 LPLTPVIQSIPEQA-LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYL 581
               P  + I  +  + V LDGRI+G+        +   LR  K  G  K+P+ LE+  +
Sbjct: 590 T--QPFERRISGKTNVCVQLDGRIIGWATPDTCERIAIALRRFKTEGRHKVPRDLEVGLV 647

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
             P    G YPGL+LF+   RM+RPV  LA G  E IG FEQV+++I  T  E   G+ +
Sbjct: 648 --PPSSGGQYPGLFLFSTRARMMRPVRLLANGQEEHIGPFEQVYLNIACTADEIEAGVHS 705

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP     ++   KLYR+QT 
Sbjct: 706 HVEFAATNVLSVLANLTPFSDYNQSPRNMYQCQMGKQTMGTPSTALTHRTDNKLYRIQTG 765

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            +P  RP  +DT   D +P G NA+VAVISYTGYDMEDAMI+NKS+YERGF HG ++KS 
Sbjct: 766 QTPIVRPALHDTYGFDGYPNGFNAVVAVISYTGYDMEDAMIINKSAYERGFGHGSVYKSH 825

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQ--AQIFFGVVHYQRLRHMVSDKWQTKDYFGRD-P 818
            +EL S            G +GS       + FG                    FG D P
Sbjct: 826 TLELASA----------KGAEGSAPNRGQNLIFG--------------------FGADVP 855

Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
           A+     +L   G+ + G  +   D   +Y+  +  R    +Y   EE  ++ VR+ +G 
Sbjct: 856 ASHTARQRLDGRGIPHPGMLVRRGDIYAAYYNTTTKRTHYDKYESDEEAYIDTVRLIAGN 915

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
                      ++  RI R P +GDKF+SR GQKG+CS ++PA DLPF++SG+ PD++ N
Sbjct: 916 IASNEGKLIKLHLMLRIVRRPEIGDKFSSRHGQKGVCSQRFPAIDLPFSESGMQPDVIIN 975

Query: 939 PHGFPSRMTIGFL 951
           PH FPSRMTIG L
Sbjct: 976 PHAFPSRMTIGML 988



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNY+G E MYSG+ G   +A I+ G+V+YQRLRHMVSDK+Q +
Sbjct: 1028 AGYNYHGNEPMYSGITGEEFKADIYLGMVYYQRLRHMVSDKYQVR 1072


>gi|363749505|ref|XP_003644970.1| hypothetical protein Ecym_2421 [Eremothecium cymbalariae
           DBVPG#7215]
 gi|356888603|gb|AET38153.1| Hypothetical protein Ecym_2421 [Eremothecium cymbalariae
           DBVPG#7215]
          Length = 1195

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 365/982 (37%), Positives = 527/982 (53%), Gaps = 127/982 (12%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFM---LDEGL-DLAVEDI---------APIE 95
           +  F  PP  ++ F L   A  PHI SF+ +   +++GL +  V DI         A  E
Sbjct: 21  ESRFINPPKDKSAFPLLQEAVQPHIGSFNALTAGVNDGLLNQGVRDIGTKVLFDGKASSE 80

Query: 96  FEIY-GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW- 153
              Y G  L LNI + +I++P    G       K +P+E RQ  + Y G   + + W   
Sbjct: 81  NPNYLGNKLALNIEQVSITKPLSNDGVSSAVERKVFPSECRQRLASYKGKLLLKLNWVVN 140

Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
           DG+   T  ++ G +PIML+S RCHL  L+P +L+E  E  DE GGYFIV G EKL+R+L
Sbjct: 141 DGEETYTEVRDCGSLPIMLQSNRCHLDKLSPYELVEHKEESDEMGGYFIVNGIEKLIRML 200

Query: 214 INNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK 273
           I  RRNHP+AI R ++ NRG  +S  GV IRSV+ D+++  NVLH++ +G   F FS RK
Sbjct: 201 IVQRRNHPMAIIRPSFANRGASYSPYGVQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRK 260

Query: 274 SMCLLG------------------------------------MMQSLHEEGIHTQHDSKV 297
           +  L+                                     +++S  +   H Q+  +V
Sbjct: 261 NEYLVPVVMILKALNDMSDREIFDGIVGADTSNSFLTDRLELLLRSFKKRYPHLQNCRQV 320

Query: 298 --FFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-DDYWDKFLCLSHMTCKLFHVVQ 354
             + G  F+   Q  L  + + E+    L   +L HL  D  DK   L  M  KL+ +V 
Sbjct: 321 LQYLGDKFRVVFQASL-DMTDYEVGKEFLKRIVLVHLGKDNIDKSRMLMFMIRKLYCLVA 379

Query: 355 GMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------- 404
           G    D+ D+   QE++ GG LY  ++K++       ++   +SD+      +       
Sbjct: 380 GECSPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIRLQIQSDVNRGIAVNFKDRKYM 439

Query: 405 ---------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
                    +I + +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VH
Sbjct: 440 SRVLMRVNENIGAKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVH 497

Query: 456 RGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP 515
           RGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS       +++IP
Sbjct: 498 RGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKIS--TTQTDVSKIP 555

Query: 516 SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK--IP 573
           S+L +LG+ P + V  + P     + LDG+I+G+   +    +   LR  K+ G+   + 
Sbjct: 556 SILYALGVSPASNVSAAGPSMCC-IQLDGKIIGWCSHEQGRIVADTLRFWKVEGKTPGLS 614

Query: 574 KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMK 633
             LE+ Y+  P    G YPGLY+F G  RM+RPV  L     + +G FEQV+M+I +T +
Sbjct: 615 VDLEVGYV--PPSSRGQYPGLYIFGGHSRMMRPVRYLPLDKEDIVGPFEQVYMNIAVTPQ 672

Query: 634 EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
           E    + TH E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   
Sbjct: 673 EIQNNVHTHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVPLCHRSDN 732

Query: 694 KLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
           KLYRLQT  +P  +   YD   MD+FP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGFA
Sbjct: 733 KLYRLQTGQTPIVKAKLYDDYGMDDFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFA 792

Query: 754 HGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
           +G ++K+  ++L    +     T + G                                 
Sbjct: 793 YGTVYKTEKVDLSMNRSRGDPITQHFG--------------------------------- 819

Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
           FG D   K   +KL  DG+  +G  + E DP+ +Y+ ++ N+     Y   E   +E V 
Sbjct: 820 FGNDEWPKEWLEKLDDDGMPILGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVN 879

Query: 874 M----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           +    S+ F E       C  I YR++R P +GDKF+SR GQKG+CS KWP  D+PFT++
Sbjct: 880 LIGDESNKFQE-----LQCVTIKYRVRRIPQIGDKFSSRHGQKGVCSRKWPTIDMPFTET 934

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G+ PD++ NPH FPSRMTIG  
Sbjct: 935 GMQPDVIINPHAFPSRMTIGMF 956



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 39/47 (82%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSGV G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 994  LKAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVR 1040


>gi|302693869|ref|XP_003036613.1| hypothetical protein SCHCODRAFT_80314 [Schizophyllum commune H4-8]
 gi|300110310|gb|EFJ01711.1| hypothetical protein SCHCODRAFT_80314 [Schizophyllum commune H4-8]
          Length = 1226

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 363/988 (36%), Positives = 526/988 (53%), Gaps = 126/988 (12%)

Query: 51  DKNFGKPPDKQ------NEFLLTLGAPHIASFDFMLDEG------------LDLAVEDIA 92
           +K F  PP         NEF+    APH+ SF+ + D+             L L +E+I 
Sbjct: 20  EKLFRHPPRDSASYNILNEFV----APHLESFNALFDDSGLPSGDGDGRGLLSLGIEEIG 75

Query: 93  P-IEFEI------------YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRS 139
             + F+             +G  +++ I    I+ P +          K +PTEAR+  +
Sbjct: 76  ERVVFDGDGRPESEHGATGWGNRMRIWIDSVNIARPMLSDRETFSKQRKIFPTEARERLT 135

Query: 140 VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
            Y G   + + W+          KE G VPIM++S RC+LR ++ AQL+   E  +E+GG
Sbjct: 136 SYRGRMTMKICWTDSHGNKNDMVKECGLVPIMVRSVRCNLRGMSSAQLVAHREEAEEFGG 195

Query: 200 YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHF 259
           YF++ G+E+L+R LI  RRNH I++ R ++ NRG  ++   V IR V+ D+++  N LH+
Sbjct: 196 YFVINGNERLIRYLILPRRNHVISLLRPSFANRGPSYTPHAVQIRCVRPDQTSVTNTLHY 255

Query: 260 VTNGSARFMFSHRKSMCLLGMMQSLHE----------EGIHTQHDSKVFFGQ----IFKE 305
           ++NG A   FS RK   ++ +M  L            EG+  Q     F       + + 
Sbjct: 256 LSNGMAMLRFSWRKQEYVIPIMLILKALVGASDKEIFEGVVMQDFENTFLTDRVELLLRS 315

Query: 306 KLQYDLRHLNE---------------------VEICDYMLTNCILPHLDDYWDKFLCLSH 344
              Y +R  N+                     + +  +++   +L HL    +K+  L  
Sbjct: 316 FKAYTMRTGNQCLEYLGDRFRVVLNLPEDWTNLAVGTWLVNKMVLVHLPTPREKYNMLLF 375

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--------KSG------TSA 390
           M  KL+ +V G    D+ DS   QE++  G+LY  ++K+         ++G         
Sbjct: 376 MLRKLYALVSGECCADNPDSPQHQEVLLPGTLYGMIIKERCEEVLNGIRAGIMSDVRNGV 435

Query: 391 VLKESDIYAAFRASS-----IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
           V+  +D     +  S     I + ++NFLATGN+ +   + L L QASGF I+AE +N  
Sbjct: 436 VVDFNDKRYMTKVMSKVSFDIGAKLSNFLATGNLVS--PTGLDLQQASGFTIVAEKLNWQ 493

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
           RY+SHFR +HRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNHL+  C+I+  
Sbjct: 494 RYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRTCRIT-- 551

Query: 506 IPSKVLAQIPSVLVSLGML-PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
               ++A IP++L + GM  P    I       + V LDGR++G+    +A  L   LR+
Sbjct: 552 TTPLIVAHIPALLAAHGMTQPFAGRING--RTNICVQLDGRVIGWARPAVAQQLANNLRI 609

Query: 565 LKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
            K  G  ++P  LEI  +   E   G YPGL+LF+   R +RPV  L  G  + +G+FEQ
Sbjct: 610 WKTEGMHEVPMDLEIGLVL--ESKGGQYPGLFLFSSRSRFMRPVKYLPNGRDDQVGSFEQ 667

Query: 624 VFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
           V+M+I    +E  PG+T+H E + T+FLS LAN+ P  D NQSPRN+YQCQMGKQTMGTP
Sbjct: 668 VYMNIACLPEEIEPGVTSHVEHNPTNFLSILANMTPFSDFNQSPRNIYQCQMGKQTMGTP 727

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
                ++   KLYRLQT  SP  RP  ++T  MD FP GTNAIVAVISYTGYDMEDAMIL
Sbjct: 728 STAINHRTDNKLYRLQTGQSPIVRPALHNTYAMDAFPNGTNAIVAVISYTGYDMEDAMIL 787

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           NKS++ERGF +G ++KS  I+L+             G   S     + FG+         
Sbjct: 788 NKSAHERGFGYGTVYKSAIIDLKD----------QKGATKSSSAPTLHFGL--------- 828

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
                  KD         A  + +G DGL  VG KL   DPM ++  +   R    +Y G
Sbjct: 829 ------GKDIRRTGDKAHACTEFVGEDGLPLVGVKLTAGDPMAAFINDVTGRTQFQKYKG 882

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
            E   V+ VR+  G  + G        +  RI R+P +GDKF+SR GQKG+CS KWPA D
Sbjct: 883 DETAYVDQVRLLGG--DNGDTELQKIQVTLRITRSPVIGDKFSSRHGQKGVCSQKWPAVD 940

Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 941 MPFSESGMQPDVIINPHAFPSRMTIGML 968



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            L +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 1006 LAAGYNYYGNEPMYSGITGQEFAADIYLGVVYYQRLRHMVLDKFQVRTTGQVDPLTR 1062


>gi|50552684|ref|XP_503752.1| YALI0E09845p [Yarrowia lipolytica]
 gi|49649621|emb|CAG79343.1| YALI0E09845p [Yarrowia lipolytica CLIB122]
          Length = 1165

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 356/968 (36%), Positives = 527/968 (54%), Gaps = 120/968 (12%)

Query: 54  FGKPPDKQNEFLLTLG-APHIASFDFMLDEGLD----LAVEDIAPI-----EFEIYGKTL 103
           F  PPD+Q   LL    APHI SF+ + + G+D    LA +++        + E  G  L
Sbjct: 18  FANPPDEQKYPLLRDAVAPHIGSFNALTEGGMDSLLNLAAKEVGERVVFDGDDENLGNRL 77

Query: 104 KLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK 163
            + +    +  P V A        K +P+E R+  + Y     +T+ +S +G      ++
Sbjct: 78  AIRVANVQLGRPTVSANDKTTINRKVFPSECRERMATYRARMVLTLGYSVNGGPEKFESR 137

Query: 164 EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
           +VG +PIM+ S RCHL  + P  ++   E  +E GGYF++ G EKL+RLLI  RRNHP+A
Sbjct: 138 DVGMIPIMMGSNRCHLEGMGPKDMVAHKEESEEQGGYFVINGLEKLIRLLIVQRRNHPLA 197

Query: 224 IKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQS 283
           I R ++  RG  ++  GV IRSV+ D+S+  NVLH++++G     FS RK+  L+ +M  
Sbjct: 198 IIRKSFTKRGSNYTTFGVQIRSVRPDQSSQTNVLHYLSDGGITMRFSWRKNEYLVPVMMI 257

Query: 284 LHEEGIHTQHDSKVFFGQIFKE--------KLQYDLRH---------------------- 313
           L  + +   +D ++F G +  E        +L+  LR+                      
Sbjct: 258 L--KALVETNDREIFDGIVASEGSNSFLTDRLELLLRNYKSYKLTSKQENLAFLGEKFRI 315

Query: 314 -------LNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
                  ++  ++   ML   IL HL D  DKF  L  M  KL+ +V      D+ D++ 
Sbjct: 316 VMDAPKDMSNEDVGRLMLKRVILVHLQDNTDKFRMLLFMIRKLYALVASECSPDNPDAVQ 375

Query: 367 LQEIMTGGSLYLQLLKK-----------------EKSGTSAVLKESDIYAAFRA---SSI 406
            QE++ GG LY  ++K+                 +K   S  L +  I           I
Sbjct: 376 HQEVLLGGFLYGMIIKERMEEYLSNFCATVRTELQKKKQSLHLDDPKIMQRICPRINEDI 435

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
              +  FL+TGN+ +  ++ L L Q +G+ ++ E IN  R+++HFR +HRGS+F E++++
Sbjct: 436 GRKLHYFLSTGNLVS--HTGLDLQQTTGYTVIVEKINFHRFIAHFRMIHRGSFFAELKTT 493

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
           + R+L  ++WGF+CPVHTPDG+PCGLLNHL   C IS  +    +  I SVL  LG+ P 
Sbjct: 494 DVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCLIS--VKKSDVGDIDSVLNQLGISP- 550

Query: 527 TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPE 585
              + + P++++ VMLDG+I+G+   +IA      +R  K+ G+ ++P+ LE V L  P 
Sbjct: 551 AGALANTPQKSV-VMLDGKIIGWCTHEIAQQAANTIRQWKVTGDARLPQDLE-VGLVPPS 608

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHREL 645
           +G G YPGLYLF    R +RPV +LA    + +G FEQV++++ +T  E    + +H E 
Sbjct: 609 RG-GQYPGLYLFAEASRFMRPVKHLATEKEDIVGPFEQVYLNVAVTPDE-ITNVHSHVEY 666

Query: 646 SKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPF 705
           S T+ LS LAN+ P  D NQSPRNMYQCQMGKQ MGTP +   ++   K+YRLQT  SP 
Sbjct: 667 SPTNILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGV-LTHRSDNKMYRLQTGQSPI 725

Query: 706 FRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIEL 765
            R   +D   +DNFP G NA+VAVISYTGYDM+DAMI+NKS++ERGF HG I+K+  ++L
Sbjct: 726 VRAGLFDEYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTEKVDL 785

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
                   TE    G D +++     FG                    FG D   +    
Sbjct: 786 --------TEKQKPG-DPTLLH----FG--------------------FGPDNWPREWTQ 812

Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM--SSGFTEGGS 883
            L  DGL  VGAKL+  DP+ +Y+  + N+ +  +Y   E   VE V++       E   
Sbjct: 813 TLDVDGLPLVGAKLSNGDPIAAYYDSNSNKTMCLKYKSGETGFVEEVKLLGDDSLGELQK 872

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +T     +  RI R+P +GDKF+SR GQKG+CS KWP  D+PF++SG+ PD++ NPH FP
Sbjct: 873 IT-----VKLRIPRSPVIGDKFSSRHGQKGVCSQKWPTYDMPFSESGIQPDVIINPHAFP 927

Query: 944 SRMTIGFL 951
           SRMTIG  
Sbjct: 928 SRMTIGMF 935



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L++GYNY+G E MYSGV G  ++  I+ GVV YQRLRHMV+DK+Q +     +P      
Sbjct: 973  LKAGYNYHGNEPMYSGVTGQELRCDIYVGVVFYQRLRHMVNDKFQVRSTGPVNPLTMQPV 1032

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMC 868
                  G + VG    ERD +  +      ++R + C    +  MC
Sbjct: 1033 KGRKRSGGIRVGEM--ERDALIGHGTSYLLQDRLLNCSDYTQTSMC 1076


>gi|374106178|gb|AEY95088.1| FABR029Wp [Ashbya gossypii FDAG1]
          Length = 1196

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 529/983 (53%), Gaps = 129/983 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFML-------------DEGLDLAVEDIAPIE 95
           +  F  PP  ++ + L   A  PH+ SF+ +              D G  +  +  A  E
Sbjct: 21  EARFVSPPKDKSAYPLLYEAVEPHVGSFNALTEGPGGGLLNLGARDIGAKVVFDGKASDE 80

Query: 96  FEIY-GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW- 153
              Y G  L L++ + ++++P    G         +P EAR+  + Y G   + + WS  
Sbjct: 81  NPNYLGNKLALSVTQVSLTKPMSNDGVTAAAERNVFPAEARKRLTTYRGKLLLKLNWSVN 140

Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
           DG+   +  ++ G +P+ML+S RCHL  ++P +L+E  E  DE GGYFIV G EKL+R+L
Sbjct: 141 DGEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVNGIEKLIRML 200

Query: 214 INNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK 273
           I  RRNHP+AI R ++ NRG  +S  GV IR V+ D+++  NVLH++ +G   F FS RK
Sbjct: 201 IVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQTSQTNVLHYLNDGQVTFRFSWRK 260

Query: 274 SMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRH--------LNEV 317
           +  L+ ++  L  + +    D ++F G +          ++L+  LR         LN  
Sbjct: 261 NEYLVPVVLIL--KALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFKKRFPQLLNRR 318

Query: 318 EICDYM-----------------------LTNCILPHL-DDYWDKFLCLSHMTCKLFHVV 353
           ++  Y+                       L   +L HL D+  DK   L  M  KL+ +V
Sbjct: 319 QVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDENTDKSNMLMFMIRKLYSLV 378

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------ 404
            G    D+ D+   QE++ GG LY  ++K++       +K   ++D+             
Sbjct: 379 AGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADVNRGMPVDFKDRKY 438

Query: 405 ----------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV 454
                     +I S +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR V
Sbjct: 439 MTRVLTRINENIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMV 496

Query: 455 HRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
           HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS       +++I
Sbjct: 497 HRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKIS--TTQSDVSKI 554

Query: 515 PSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG--EKI 572
           P++L SLG+ P   V  + P     V LDG+IVG+   +    +   LR  K+ G  + +
Sbjct: 555 PTLLYSLGVSPAAHVTAAGPSLCC-VQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGL 613

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITM 632
           P  LEI Y+  P    G YPGLYLF G  RM+RPV  L     + +G FEQV+MDI +T 
Sbjct: 614 PLDLEIGYV--PASKRGQYPGLYLFGGHSRMMRPVRYLPLDKQDIVGPFEQVYMDIAVTP 671

Query: 633 KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
           +E    + TH E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++  
Sbjct: 672 EEIQNNVHTHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSD 731

Query: 693 GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
            KLYRLQ+  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGF
Sbjct: 732 NKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGF 791

Query: 753 AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
           ++G ++K+  I+L          ++  G    + Q    FG                   
Sbjct: 792 SYGTVYKTEKIDL----------SLSRGRGDPVTQ---HFG------------------- 819

Query: 813 YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVV 872
            FG D   K   +KL  DGL  +G+ + E DP+ +Y+ ++ N+     Y   E   +E V
Sbjct: 820 -FGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEV 878

Query: 873 RM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
            +    S+ F E   +T     I YRI+R P +GDKF+SR GQKG+CS KWP  D+PF++
Sbjct: 879 TLIGDESNKFQELQYIT-----IKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTVDMPFSE 933

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           +G+ PD++ NPH FPSRMTIG  
Sbjct: 934 TGIQPDVIINPHAFPSRMTIGMF 956



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 994  LKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVR 1040


>gi|302306565|ref|NP_982975.2| ABR029Wp [Ashbya gossypii ATCC 10895]
 gi|442570011|sp|Q75DS1.2|RPA2_ASHGO RecName: Full=DNA-directed RNA polymerase I subunit RPA2; AltName:
           Full=DNA-directed RNA polymerase I polypeptide 2;
           Short=RNA polymerase I subunit 2
 gi|299788577|gb|AAS50799.2| ABR029Wp [Ashbya gossypii ATCC 10895]
          Length = 1196

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 529/983 (53%), Gaps = 129/983 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFML-------------DEGLDLAVEDIAPIE 95
           +  F  PP  ++ + L   A  PH+ SF+ +              D G  +  +  A  E
Sbjct: 21  EARFVSPPKDKSAYPLLYEAVEPHVGSFNALTEGPGGGLLNLGARDIGAKVVFDGKASDE 80

Query: 96  FEIY-GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW- 153
              Y G  L L++ + ++++P    G         +P EAR+  + Y G   + + WS  
Sbjct: 81  NPNYLGNKLALSVTQVSLTKPMSNDGVTAAAERNVFPAEARKRLTTYRGKLLLKLNWSVN 140

Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
           DG+   +  ++ G +P+ML+S RCHL  ++P +L+E  E  DE GGYFIV G EKL+R+L
Sbjct: 141 DGEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVNGIEKLIRML 200

Query: 214 INNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK 273
           I  RRNHP+AI R ++ NRG  +S  GV IR V+ D+++  NVLH++ +G   F FS RK
Sbjct: 201 IVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQTSQTNVLHYLNDGQVTFRFSWRK 260

Query: 274 SMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRH--------LNEV 317
           +  L+ ++  L  + +    D ++F G +          ++L+  LR         LN  
Sbjct: 261 NEYLVPVVLIL--KALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFKKRFPQLLNRR 318

Query: 318 EICDYM-----------------------LTNCILPHL-DDYWDKFLCLSHMTCKLFHVV 353
           ++  Y+                       L   +L HL D+  DK   L  M  KL+ +V
Sbjct: 319 QVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDENTDKSNMLMFMIRKLYSLV 378

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------ 404
            G    D+ D+   QE++ GG LY  ++K++       +K   ++D+             
Sbjct: 379 AGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADVNRGMPVDFKDRKY 438

Query: 405 ----------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV 454
                     +I S +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR V
Sbjct: 439 MTRVLTRINENIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMV 496

Query: 455 HRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
           HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+IS       +++I
Sbjct: 497 HRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKIS--TTQSDVSKI 554

Query: 515 PSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG--EKI 572
           P++L SLG+ P   V  + P     V LDG+IVG+   +    +   LR  K+ G  + +
Sbjct: 555 PTLLYSLGVSPAAHVTAAGPSLCC-VQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGL 613

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITM 632
           P  LEI Y+  P    G YPGLYLF G  RM+RPV  L     + +G FEQV+MDI +T 
Sbjct: 614 PLDLEIGYV--PASKRGQYPGLYLFGGHSRMMRPVRYLPLDKQDIVGPFEQVYMDIAVTP 671

Query: 633 KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
           +E    + TH E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++  
Sbjct: 672 EEIQNNVHTHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSD 731

Query: 693 GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
            KLYRLQ+  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGF
Sbjct: 732 NKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGF 791

Query: 753 AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
           ++G ++K+  I+L          ++  G    + Q    FG                   
Sbjct: 792 SYGTVYKTEKIDL----------SLSRGRGDPVTQ---HFG------------------- 819

Query: 813 YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVV 872
            FG D   K   +KL  DGL  +G+ + E DP+ +Y+ ++ N+     Y   E   +E V
Sbjct: 820 -FGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEV 878

Query: 873 RM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
            +    S+ F E   +T     I YRI+R P +GDKF+SR GQKG+CS KWP  D+PF++
Sbjct: 879 TLIGDESNKFQELQYIT-----IKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTVDMPFSE 933

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           +G+ PD++ NPH FPSRMTIG  
Sbjct: 934 TGIQPDVIINPHAFPSRMTIGMF 956



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 994  LKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVR 1040


>gi|428164204|gb|EKX33238.1| hypothetical protein GUITHDRAFT_158927 [Guillardia theta CCMP2712]
          Length = 1090

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 350/968 (36%), Positives = 519/968 (53%), Gaps = 125/968 (12%)

Query: 56  KPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKL--NIVKAAIS 113
           K   ++ +    L APH+ S+++ L EGL  AV+ + P+        L++  +I    +S
Sbjct: 5   KSKKEEEDVRAHLAAPHVESYNYFLTEGLSAAVQRLLPVCVGPGEGGLRIFCSITSVRLS 64

Query: 114 EPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLK 173
            P     P      +  P E R+ R  Y  P   T+A   +G       +++G +PIM +
Sbjct: 65  SP---VKPDDCADRRLLPKECRELRLTYKAPLYATIAVRLEGAEPIEIDRKLGELPIMTR 121

Query: 174 SKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRG 233
           S+RCHL+ ++  QL++ GE P E+GGYFI  G+EK++RLL   RRN+P+A+ R ++  RG
Sbjct: 122 SQRCHLQGMSQKQLMQHGEEPFEFGGYFIANGNEKVIRLLSLMRRNYPMALIRPSFTKRG 181

Query: 234 LLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-------MCLLGMMQSLHE 286
             ++  G  +R V+ D+S +   LH+++ G+       RK        M L  M  S  E
Sbjct: 182 SSYTKFGCMMRCVREDQSGSTLTLHYLSTGNCTLSVKIRKQEYLIPAVMILKAMTGSSDE 241

Query: 287 E------------------------------GIHTQHDSKVFFGQIFKEKLQYDL---RH 313
           +                              G+ T+ D   + GQ F+  L   L     
Sbjct: 242 QIFTNVVQGDATNTFVSDRIEVALRDSTKYIGLRTKEDFLGYLGQRFRVVLIRSLYLPDD 301

Query: 314 LNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
           +++VEI   +L N    HLD   DK+ CL  M  KL+ +V G +Q DS DS+  QE++  
Sbjct: 302 VSDVEIGQKLLDNYFFIHLDSDEDKWNCLVVMMQKLYALVSGAIQPDSPDSLHCQEVLLP 361

Query: 374 GSLYLQLLKKEK-----SGTSAV-LKESDIYAAFRA-------SSIESAMTN-------- 412
           G L + ++ KEK     +G   V LK+    ++F +       S IES +          
Sbjct: 362 GHL-MTMMVKEKLQDYLAGIQDVFLKDQRPGSSFASQVNLADQSYIESLLMRNPVDIGRK 420

Query: 413 ---FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
              F++TGN+ +   + L L Q SG+ I+AE +N +RY+SHFR++HRG +F  M+S+  R
Sbjct: 421 IEYFMSTGNLVS--QTGLDLSQVSGYTIVAERLNFLRYLSHFRSIHRGQFFTTMKSTAVR 478

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLT- 527
           +L  ++WGF+CPVHTPDG PCGLLNHLT+ C + S ++P   L  +   +++LG  P++ 
Sbjct: 479 KLLPESWGFVCPVHTPDGGPCGLLNHLTSVCTLHSHFVPPAALKAVEDAVLTLGASPVSA 538

Query: 528 ---PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
              PV+     +AL +MLDGR++G +  Q A  LV ++R+LK  G + IP+ LEI ++  
Sbjct: 539 GGLPVVMG--REALPIMLDGRMIGRVGAQEAVQLVGRMRLLKAEGLRGIPEFLEIAHV-- 594

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
           P +  GL+PG++LFT P RM+RPV  L++G  EWIGTFEQ+ M+I +  KE  P   TH 
Sbjct: 595 PPRTNGLWPGVFLFTTPARMMRPVRQLSSGQHEWIGTFEQIHMEIAVMGKEVRPRQHTHM 654

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           ELS  + LS +A   P  D NQSPRNMYQCQMGKQTMGTP   +  +   K+YR+ TP  
Sbjct: 655 ELSPMNMLSVVAQCTPFSDMNQSPRNMYQCQMGKQTMGTPMYAYNERVDNKVYRILTPQV 714

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  R    D L MD++P GTNA+VAVISYTG+DMEDAMI+NK +Y+RGF +G ++ +  +
Sbjct: 715 PLVRNQAQDNLRMDDYPTGTNAVVAVISYTGFDMEDAMIINKGAYDRGFGNGHVYTTTIV 774

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L             S   GS                                +P + + 
Sbjct: 775 DLTK-----------SAPPGSRFD-----------------------------NPKDDSY 794

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
            D L  DGL  VG+ L +   +Y     +  R     +   E + V+ VR+     +G +
Sbjct: 795 VDHLDGDGLPQVGSILQQGQELYRSVDPATGRSKCVMHKSAEAVQVDAVRL---LGDGPT 851

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
                  I  R  R P +GDKF+SR GQKG+ S  WP E++PF+++G+ PD++ NP+ FP
Sbjct: 852 KPLQKISIKLRYDRRPVIGDKFSSRHGQKGVLSTLWPQENMPFSETGMTPDVIINPNAFP 911

Query: 944 SRMTIGFL 951
           SRMTIG L
Sbjct: 912 SRMTIGML 919



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 3/55 (5%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +GYNY+GTE +YSGV G MM+AQIF G+V+YQRLRHMVSDK+Q +      P NK
Sbjct: 959  AGYNYHGTEVLYSGVSGMMMEAQIFMGLVYYQRLRHMVSDKYQCR---ATGPVNK 1010


>gi|367003930|ref|XP_003686698.1| hypothetical protein TPHA_0H00540 [Tetrapisispora phaffii CBS 4417]
 gi|357525000|emb|CCE64264.1| hypothetical protein TPHA_0H00540 [Tetrapisispora phaffii CBS 4417]
          Length = 1203

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 370/1011 (36%), Positives = 540/1011 (53%), Gaps = 139/1011 (13%)

Query: 30  KVLKMILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG---- 83
           K++K + N  T    +++   +  F  PP  ++ + L   A  PH+ SF+  L EG    
Sbjct: 3   KIIKPVNNSRTAHFRTVER--ESRFINPPKDKSAYPLLEEAVKPHVGSFN-ALTEGEDGG 59

Query: 84  -LDLAVEDIA-PIEFE--------------IYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
            L+  V+DI   I F+                G  L +++   +IS+P    G       
Sbjct: 60  LLNQGVKDIGEKIIFDGKNTGADSETANSGYLGNKLAISVESVSISKPMANDGVTSAVER 119

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSW-DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           K+YP+EARQ  + Y G   V + WS  DG    T  ++ G +P+ML+S RCHL NL+P +
Sbjct: 120 KFYPSEARQRLTSYKGKLLVKLKWSVNDGDDTFTDMRDCGGLPVMLQSNRCHLNNLSPYE 179

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           L+++ E  DE GGYFI+ G EKL+R+LI  RRNHP+AI R ++ NRG  +S  GV +RSV
Sbjct: 180 LVKQKEESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFSNRGASYSQYGVQLRSV 239

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI---- 302
           + D+++  NVLH++ +G   F FS RK+  L+  +  L  + +    D ++F G I    
Sbjct: 240 RPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPAVMIL--KALIDTSDREIFDGIIGSDI 297

Query: 303 ----FKEKLQYDLRHL-------------------------------NEVEICDYMLTNC 327
                 ++L+  LR                                 +++E+   ++   
Sbjct: 298 KNSFLTDRLELLLRGFKKRFPLLQNRTQVLQYIGDKFRVVFQASPDKSDLEVGQEVIDRI 357

Query: 328 ILPHLD--DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE- 384
           +L HL   +  DK   L  M  KL+ +V G    D+ D+   QE++ GG LY  ++K++ 
Sbjct: 358 VLVHLGKGNNEDKSRMLLFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIIKEKI 417

Query: 385 ---------------KSGTSAVLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNST 426
                            G +   K+    +        +I S +  FL+TGN+ +   S 
Sbjct: 418 DEYLQNIVAQIRTDINRGIAINFKDRKYMSRVLMRVNENIGSKLQYFLSTGNLVS--QSG 475

Query: 427 LQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
           L L Q SG+ ++AE IN  R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPD
Sbjct: 476 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPD 535

Query: 487 GTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRI 546
           G+PCGLLNH    CQIS  + S V ++IPS+L SLG+ P +    + P     V +DG+I
Sbjct: 536 GSPCGLLNHFAHKCQIST-VQSDV-SKIPSLLYSLGVTPASQAFAAGPS-LCCVQIDGKI 592

Query: 547 VGYILDQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
           VG+   +    +   LR+ K+ G+   +P  LEI Y+  P    G YPGLY+F G  RM+
Sbjct: 593 VGWTTHEQGKIIADTLRLWKVEGKTAGLPLDLEIGYV--PPSTRGQYPGLYIFGGHSRMM 650

Query: 605 RPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
           RPV  L     + +G FEQV+M+I +T +E    + +H E + T+ LS LANL P  D N
Sbjct: 651 RPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHSHVEFTPTNILSILANLTPFSDFN 710

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRNMYQCQMGKQTMGTP +   ++   KLYRLQ+  +P  +   YD   MDNFP G N
Sbjct: 711 QSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGMN 770

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           A+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K    +L    +     T + G    
Sbjct: 771 AVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKHDLSMNRSRGDPITQHFG---- 826

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
                                        FG D   K   +KL  DGL  +G  + E DP
Sbjct: 827 -----------------------------FGPDEWPKEWLEKLDDDGLPMIGTYVEEGDP 857

Query: 845 MYSYWKESENRYVTCRYSGKEEMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPT 900
           + +Y+ ++ N+     Y   E   +E V +    S+ F E  +V+     I YRI+R P 
Sbjct: 858 VCAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQ 912

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKF+SR GQKG+CS KWP  D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 913 IGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMF 963



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GYNY+G E MYSG  G  ++  I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1001 LKAGYNYHGNEPMYSGATGEELRCDIYVGVVYYQRLRHMVNDKFQVR 1047


>gi|325192359|emb|CCA26801.1| DNAdirected RNA polymerase I complex subunit Rpa2 p [Albugo
           laibachii Nc14]
          Length = 1198

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 354/971 (36%), Positives = 526/971 (54%), Gaps = 114/971 (11%)

Query: 58  PDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT-LKLNIVKAAISEPK 116
           P + N  L  L +PHI SF+++L EGL LA+ DIA +  ++ G+  L + I  A +  P 
Sbjct: 48  PKETNTKLENLVSPHINSFNYLLTEGLHLAIADIARVSIQLPGQNKLSIWIEDAQVGLPF 107

Query: 117 VPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG-GTFTKEVGRVPIMLKSK 175
                 G    K  P E RQ    Y+ P  +T+A +++G        + VG +PIM++SK
Sbjct: 108 STNAVKGEQ--KLLPAECRQRGISYTAPLVLTLARAFNGSNTVERLQRVVGDIPIMVRSK 165

Query: 176 RCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL 235
           RCHL +L+P +L++  E   E GGYFI  G+E+ +RLL   RR+H +A++R A+ NRG L
Sbjct: 166 RCHLHHLSPQRLVQAKEEAYEVGGYFICNGNERCIRLLQMPRRHHVMAVRRGAFTNRGEL 225

Query: 236 FSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS------MCLLGMMQSLHEE-- 287
           ++D+ V+++ V+RD+S+    LH++ +GSA   FS RK       + +L  M SL +   
Sbjct: 226 YTDMAVFMKCVRRDQSSVTVTLHYLEDGSATVRFSVRKQEFMIPVVLVLKAMYSLTDREI 285

Query: 288 ----------------------------GIHTQHDSKVFFGQIFKEKLQY--DLRHLNEV 317
                                       G++T+ ++  + G+ F+  LQ   D  HL   
Sbjct: 286 YDRVLRGEHTNTFLALRMEVVIQQAKAFGVYTKEEALTYLGKHFRYVLQNSDDASHL--- 342

Query: 318 EICDYMLTNCILPHL------DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
           ++   ++   +  HL           + LCL  M  KL+   +G +  D+ DS+M QE++
Sbjct: 343 QVGMSLIDEFVFVHLPKGEKGGSQKAELLCL--MLRKLYAFAKGDICEDNSDSVMNQELL 400

Query: 372 TGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAF-RASSIESAMTNFLA 415
             G LYL +LK               KE +  + V+ ++ +   + R  +I  AM  FL 
Sbjct: 401 LPGHLYLNILKEKIQEGLQSLRIQILKECAKKTGVMDDAFMRRLWDRTPNIGQAMMYFLN 460

Query: 416 TGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDA 475
           TGN+ +  +S L LMQ +G+ I+AE +N  RY+SHFR+VHRG +F EM+++  R+L  D+
Sbjct: 461 TGNLKS--SSGLDLMQVAGYTIVAEKLNFYRYLSHFRSVHRGQFFTEMKTTAVRKLLPDS 518

Query: 476 WGFICPVHTPDGTPCGLLNHLTTNCQI---SEYIPSKVLA---QIPSVLVSLGMLP---L 526
           WGF+CPVHTPDG+PCGLLNHL T CQ+     +  + +L    ++   L SLGM+P    
Sbjct: 519 WGFLCPVHTPDGSPCGLLNHLATECQVVCEPAFEATTILQNELKLARFLSSLGMIPSNGF 578

Query: 527 TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEK 586
           +     +P   L ++ +G+++G     +  ++   LR +K    +  K  E   +   E 
Sbjct: 579 SDGALIMPSSYLPILFNGKVIGCAPSDLCVTIQRALRSIKSTRSQADKRCEHGIIANLEI 638

Query: 587 GM------GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
            +      G +PGL+L     R+ RP+  L    IEWIG  EQVFM+I  T K+  P  T
Sbjct: 639 CLILSTLGGPFPGLFLSADAARLTRPIKQLDTEEIEWIGPMEQVFMNIACTEKDIRPA-T 697

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH E+  T+ LS +A+L P  D NQSPRNMYQCQM KQTMGTPC +  ++G  K+YR+QT
Sbjct: 698 THIEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPCHSLSHRGDSKMYRIQT 757

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
           P SP  +        +D +P+GTNA+VAVISYTGYDMEDAMILNKSSYERGFAH  ++K 
Sbjct: 758 PQSPIVQNERLREYQLDEYPLGTNAVVAVISYTGYDMEDAMILNKSSYERGFAHASVYKH 817

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
           + +++              G DG   + Q       Y    +++SD      ++      
Sbjct: 818 VTVDI--------------GSDGKQQRTQKQDSSKAY--FTNVISDSDSDLQFYS----- 856

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                +L  DG  +VG  + + DP+  +  E+  +    ++   E   VE V +    T+
Sbjct: 857 ----PELDYDGFPHVGKTVYQGDPLACWVDETTGKQSYQKHKESEPAVVEQVTLLGKSTQ 912

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
               T   A +  R  RNP +GDKF+SR GQKG+ S+ WP  D+PFT+SG+ PDI+ NPH
Sbjct: 913 TCDFTK--ANLKLRFCRNPVIGDKFSSRHGQKGVLSILWPQTDMPFTESGMSPDIIINPH 970

Query: 941 GFPSRMTIGFL 951
            FPSRMTIG L
Sbjct: 971 AFPSRMTIGML 981



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNY GTE +YSG+ G++MQA I+ GVV+YQRLRHMVSDK Q +
Sbjct: 1022 GYNYMGTEPLYSGISGTIMQADIYIGVVYYQRLRHMVSDKSQVR 1065


>gi|348690653|gb|EGZ30467.1| hypothetical protein PHYSODRAFT_538440 [Phytophthora sojae]
          Length = 1179

 Score =  590 bits (1520), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 355/972 (36%), Positives = 523/972 (53%), Gaps = 120/972 (12%)

Query: 58  PDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK-TLKLNIVKAAISEPK 116
           P K N+ L  L +PH+ SF+F L EGLDLAV D+  +  E+  +  + L I  A I  P 
Sbjct: 34  PAKTNDKLQKLVSPHLDSFNFFLTEGLDLAVADMCKVPVELPNQHRMDLWIENAQIGYPT 93

Query: 117 VPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG-GTFTKEVGRVPIMLKSK 175
                 G    K  P+E RQ    Y+ P  VT+A S+ G        + VG +PIM++SK
Sbjct: 94  TENQITGEQ--KLLPSECRQRGISYTAPLVVTLARSFGGSQNVERIQRVVGDIPIMVRSK 151

Query: 176 RCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL 235
           RCHL  ++P +L++  E  +E GGYFI  G+E+ VRLL   RR+H +A++R A+ NRG L
Sbjct: 152 RCHLNGMSPTELVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGDL 211

Query: 236 FSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL----------------- 278
           +++L V ++ VKRD+SA    LH++ +G+A   F  +K   ++                 
Sbjct: 212 YTELAVTMKCVKRDQSAVTVTLHYLQDGNATVRFGVKKQEFMIPAGLVLKALYPLTDREI 271

Query: 279 --GMMQSLHEE-----------------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEI 319
              +++  HE                   ++T+ ++  + G+ F+  + Y   +++ VE+
Sbjct: 272 YERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYENMSNVEV 331

Query: 320 CDYMLTNCILPHLDDYWD------KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
              +L + +  H+           + LCL  M  KL+   +G V  D+ DS+M  E++  
Sbjct: 332 GSKLLDDYLFVHIPKGEKGRTQKVELLCL--MLRKLYGFAKGDVPEDNSDSVMNHELLLP 389

Query: 374 GSLYLQLLKKEKSGTSA-----VLKESD-------IYAAF------RASSIESAMTNFLA 415
           G LYL LLK++   +       +LKE+        +   F      R  +I +AMT FL 
Sbjct: 390 GHLYLMLLKEKLQDSLVAMRMNILKETQNKEKSVVMDQVFLRKMWDRTPNIGNAMTYFLN 449

Query: 416 TGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDA 475
           TGN+ +  +S L L+Q +G+ I+AE +N  RY SHFR+VHRG +F EM+++  R+L  D+
Sbjct: 450 TGNLRS--SSGLDLLQIAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVRKLLPDS 507

Query: 476 WGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV------LAQIPSVLVSLGMLPLTPV 529
           WGF+CPVHTPDG+PCGLLNHL   C++  Y   K         ++   L SLGM+P +  
Sbjct: 508 WGFLCPVHTPDGSPCGLLNHLAVECELVCYPAHKADDYLQQEVKLARFLTSLGMIPTSGY 567

Query: 530 IQS---IPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-------IPKSLEIV 579
                 +P   L VM++G+++G    ++   +   LR +K            I K+LE+ 
Sbjct: 568 ADGALVVPYSYLPVMMNGKVLGGAPAEVCKRIASVLRKVKSADSSEERDANGIVKNLEVC 627

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            L  P +G G +PGL+L     RM RPVM +    IE+IG  EQVFMDI  T  +  P  
Sbjct: 628 -LILPTRG-GPFPGLFLSADAARMSRPVMQMDTKRIEYIGPMEQVFMDIACTKDDIRPA- 684

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
           TTH E+  T+ LS +A+L P  D NQSPRNMYQCQM KQTMGTP  +  ++   K+YR+Q
Sbjct: 685 TTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSIVHRTDNKMYRIQ 744

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           +P  P  +        +D +P+GTNA+VAVISYTG+DMEDAMILNKSSYERGFAH  ++K
Sbjct: 745 SPQIPIVQNERLREYQLDEYPLGTNAVVAVISYTGFDMEDAMILNKSSYERGFAHASVYK 804

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
            + +++ S           +G  GS    + F  +                      D +
Sbjct: 805 QLTVDISS-----------NGKQGSTTSKKYFSNI--------------------KTDGS 833

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
            +    KL  DG  ++G  +N  DP+ S+  E+  +    ++   E   +E V M    +
Sbjct: 834 GEQCSTKLDRDGFPHIGQVVNYGDPIASWIDETTGQPSFQKHKESEPAIIEQVNMIGSAS 893

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           +    T   A I  R  RNPT+GDKF+SR GQKG+ S+ WP  D+PF++SG+ PD++ NP
Sbjct: 894 QASEFTK--ASIKLRFCRNPTIGDKFSSRHGQKGVMSILWPQADMPFSESGISPDVIINP 951

Query: 940 HGFPSRMTIGFL 951
           H FPSRMTIG L
Sbjct: 952 HAFPSRMTIGML 963



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GYNY G+E +YSG+ G++MQA I+ GVV+YQRLRHMVSDK Q +
Sbjct: 1002 EHGYNYMGSEPLYSGISGTVMQADIYIGVVYYQRLRHMVSDKSQVR 1047


>gi|344233049|gb|EGV64922.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Candida tenuis ATCC 10573]
          Length = 1166

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 355/974 (36%), Positives = 518/974 (53%), Gaps = 122/974 (12%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIAP------IEFE 97
           ++ F  PP  ++ + +   A  PHI SF+  L EG     L+LAV+DI           +
Sbjct: 12  EQRFQNPPKDKSAYPMLYEAIEPHIGSFN-ALTEGAHGGLLNLAVKDIGAKTIFDSTSTD 70

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  L + +    I +P +P        +   P E R+    Y     + V WS +   
Sbjct: 71  RLGNKLMIKVDSVEIGKPSIPTNDKLSLNSNTLPYECRERMISYRSKLRLKVTWSVNDGE 130

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  ++ G +P+ML+S RCHL+NL+P +L++  E  DE+GGYFIV G EKL+R+LI  R
Sbjct: 131 EMSEIRDCGLLPVMLRSSRCHLQNLSPDELVKHKEESDEFGGYFIVNGIEKLIRMLIVQR 190

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+A+ R ++ +RG  ++  G+ IR V+ D+++  NVLH++++G+  F FS +K+  L
Sbjct: 191 RNHPMALIRPSFASRGNSYTKYGIQIRCVRPDQTSQTNVLHYLSDGNVTFRFSWKKNEYL 250

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHLN-------------- 315
           + +   L  + +    D ++F G I          ++L+  LR  N              
Sbjct: 251 VPVQMIL--KALMETSDREIFDGIIGTDLSNSFLTDRLELLLRTYNKSYNLYSNQETLAY 308

Query: 316 ----------------EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
                           ++E+   +L   +L HLD   DKF  L  M  KL+ +V G    
Sbjct: 309 LGDKFRVVFDGTPDMSDIEVGKLVLKRIVLVHLDSNQDKFRMLLFMIRKLYSLVAGDCCP 368

Query: 360 DSEDSIMLQEIMTGGSLYLQLLKK---EKSGTSAVLKESDIYAAFRAS------------ 404
           D+ D+   QE++ GG LY  ++K+   E      +   SD+    + +            
Sbjct: 369 DNPDATQHQEVLLGGFLYGMIVKEKIEEYLNNFKLQVSSDLNRGLKVNFHERKYISRVFQ 428

Query: 405 ----SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYF 460
               +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F
Sbjct: 429 RINENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFF 486

Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVS 520
            E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+       ++ +P  L  
Sbjct: 487 AELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIT--TKQSDVSGVPGALSQ 544

Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIV 579
           LG+  +     +       V LDG+I+G+   + A  +   LR  KI G   IP  LE+ 
Sbjct: 545 LGISSVNSF--AAGPGVCCVQLDGKILGWTSHEKAKIVADTLRYWKIEGSHNIPLDLEVG 602

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
           Y+  P    G YPGLYLF G  RM+RPV  L  G  + +G FEQV+M+I +T +E    I
Sbjct: 603 YV--PPSNKGQYPGLYLFGGHARMVRPVKYLPLGKTDIVGPFEQVYMNIAVTPEEITNNI 660

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            +H E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQ
Sbjct: 661 HSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVGLVHRSDNKLYRLQ 720

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           +  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K
Sbjct: 721 SGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYK 780

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
              ++L             S   G  +   I FG            D W           
Sbjct: 781 VEKVDLG-----------MSRRRGDPITQHIGFG-----------DDDWP---------- 808

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
            +  ++KL  DGL  +G K+ E DP+ +Y+ ++  +     Y   E   +E V++ +  T
Sbjct: 809 -EIWQNKLDADGLPQIGVKVEEGDPIIAYFDDTLGKTKVKTYHSSEPAYIEEVKLLADDT 867

Query: 880 EGGSVTPNCAY--IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
                   C    I YRI R P +GDKF+SR GQKG+CS KWP  D+PF+++G+ PD++ 
Sbjct: 868 NS-----ECQQLSIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQTDMPFSETGIQPDVII 922

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 923 NPHAFPSRMTIGMF 936



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L +GYNY+G E MYSGV G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 974  LAAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVR 1020


>gi|317032172|ref|XP_001394181.2| DNA-directed RNA polymerase I subunit RPA135 [Aspergillus niger CBS
           513.88]
 gi|350631029|gb|EHA19400.1| hypothetical protein ASPNIDRAFT_55936 [Aspergillus niger ATCC 1015]
          Length = 1236

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 367/1011 (36%), Positives = 538/1011 (53%), Gaps = 157/1011 (15%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLD--EGLDLAVEDIAPIEFEIYG------ 100
           +K F  PP  Q  +     A  PH+ SF+ + D  + L+ A++DI    F I G      
Sbjct: 20  EKLFRNPPKDQTAYPALAAAIRPHVDSFNALFDGPKTLEAALKDIGTKTF-IDGEAETPE 78

Query: 101 ----------KTLKLNIVKAAISEP--KVPAGPVGIHFN----KYYPTEARQTRSVYSGP 144
                     K  K N +   +SE   + PA P    F       YP+E R+  + Y G 
Sbjct: 79  QKKARQAEGRKAPKRNKLHVRVSEVFLEKPALPPSNKFTTRNRNIYPSECRERHATYRGK 138

Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
               + W  +        +E+G+VPIML++ RCHL   TP++L+E  E  +E GGYFIV 
Sbjct: 139 LRARIEWRVNNGDWMESVRELGQVPIMLRTNRCHLEKATPSELVEHKEESEELGGYFIVN 198

Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS 264
           G+EKL+R+L+  +RN+P+AI R ++  RG  ++  GV IRSV+ D+++  NVLH++T+G+
Sbjct: 199 GNEKLIRMLVVGKRNYPMAIIRGSFVRRGHTYTKYGVQIRSVRPDQTSQTNVLHYLTDGN 258

Query: 265 ARFMFSHRKSMCLL-------------------GMMQSLHEEGI---------------- 289
             F FS RK+  L+                   G++ S   EGI                
Sbjct: 259 LTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSEGIKNTFVTDRVELLLRVY 318

Query: 290 -----HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WD 337
                H++   + + G+ F+  L       NE    ++ L   +LPHL +        +D
Sbjct: 319 KAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEF-LRKVVLPHLGNQNVTENQDYD 377

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------- 384
           KF  +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK+              
Sbjct: 378 KFKMILFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFQPILR 437

Query: 385 ----KSGTSAVLK---ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASG 434
               ++G +       E D  A     S E+   A+  FL+TGN+ +   + L L Q SG
Sbjct: 438 DWSNRNGGAKFTDPAFERDFLAKVVKRSNENLGGALEYFLSTGNLVS--PTGLDLQQPSG 495

Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
           + +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF CPVHTPDG+PCGLLN
Sbjct: 496 YTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLN 555

Query: 495 HLTTNCQISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
           HL   C I+    S V    IP  LV LG+   + V  S+ E ++ V LDGRI+GY   +
Sbjct: 556 HLAHKCLIAT---SDVDTTHIPKALVQLGVRSDSSV--SVTE-SVTVQLDGRIIGYCSPK 609

Query: 554 IATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
            A+++   LR  K++G +KIP+ LEI Y+  P    G YPG+Y+F+   RM RPV +L  
Sbjct: 610 QASAIANTLRRWKVMGSDKIPRELEIGYI--PNTNGGQYPGIYMFSQAARMYRPVKHLGL 667

Query: 613 GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
             ++++G FEQ FM+I    ++   G++TH E + T+ LS +AN+ P  D NQSPRNMYQ
Sbjct: 668 DKLDYVGPFEQPFMEIACLPQDLISGVSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQ 727

Query: 673 CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
           CQM KQTMGTP    +Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+ISY
Sbjct: 728 CQMSKQTMGTPGTAIQYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISY 787

Query: 733 TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFF 792
           TGYDM+DAMI+NKSS+ERGF +G I+K+    L+   +  G          S  +    F
Sbjct: 788 TGYDMDDAMIINKSSHERGFGYGTIYKTKIHSLDEKDSRRGK---------SRREVTKLF 838

Query: 793 GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY---- 848
           G      +R      W+                 L  DGL ++GA++ E   + ++    
Sbjct: 839 GFAPGGEIRA----DWRAT---------------LDEDGLPHIGARVKEGSLVAAWHTVR 879

Query: 849 WKESENRYVTC-------RYSGKEEMCVEVVRM---SSGFTEGGSVTPNCAYIGYRIQRN 898
           +  + + YV         +Y   EE  ++ VR+    SG   G +++     + YRI R 
Sbjct: 880 YDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALS-----VKYRIPRK 934

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           P +GDKF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 935 PIIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYFGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1071


>gi|134078852|emb|CAK45911.1| unnamed protein product [Aspergillus niger]
          Length = 1213

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 367/1011 (36%), Positives = 538/1011 (53%), Gaps = 157/1011 (15%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLD--EGLDLAVEDIAPIEFEIYG------ 100
           +K F  PP  Q  +     A  PH+ SF+ + D  + L+ A++DI    F I G      
Sbjct: 20  EKLFRNPPKDQTAYPALAAAIRPHVDSFNALFDGPKTLEAALKDIGTKTF-IDGEAETPE 78

Query: 101 ----------KTLKLNIVKAAISEP--KVPAGPVGIHFN----KYYPTEARQTRSVYSGP 144
                     K  K N +   +SE   + PA P    F       YP+E R+  + Y G 
Sbjct: 79  QKKARQAEGRKAPKRNKLHVRVSEVFLEKPALPPSNKFTTRNRNIYPSECRERHATYRGK 138

Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
               + W  +        +E+G+VPIML++ RCHL   TP++L+E  E  +E GGYFIV 
Sbjct: 139 LRARIEWRVNNGDWMESVRELGQVPIMLRTNRCHLEKATPSELVEHKEESEELGGYFIVN 198

Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS 264
           G+EKL+R+L+  +RN+P+AI R ++  RG  ++  GV IRSV+ D+++  NVLH++T+G+
Sbjct: 199 GNEKLIRMLVVGKRNYPMAIIRGSFVRRGHTYTKYGVQIRSVRPDQTSQTNVLHYLTDGN 258

Query: 265 ARFMFSHRKSMCLL-------------------GMMQSLHEEGI---------------- 289
             F FS RK+  L+                   G++ S   EGI                
Sbjct: 259 LTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSEGIKNTFVTDRVELLLRVY 318

Query: 290 -----HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WD 337
                H++   + + G+ F+  L       NE    ++ L   +LPHL +        +D
Sbjct: 319 KAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEF-LRKVVLPHLGNQNVTENQDYD 377

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------- 384
           KF  +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK+              
Sbjct: 378 KFKMILFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFQPILR 437

Query: 385 ----KSGTSAVLK---ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASG 434
               ++G +       E D  A     S E+   A+  FL+TGN+ +   + L L Q SG
Sbjct: 438 DWSNRNGGAKFTDPAFERDFLAKVVKRSNENLGGALEYFLSTGNLVS--PTGLDLQQPSG 495

Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
           + +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF CPVHTPDG+PCGLLN
Sbjct: 496 YTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLN 555

Query: 495 HLTTNCQISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
           HL   C I+    S V    IP  LV LG+   + V  S+ E ++ V LDGRI+GY   +
Sbjct: 556 HLAHKCLIAT---SDVDTTHIPKALVQLGVRSDSSV--SVTE-SVTVQLDGRIIGYCSPK 609

Query: 554 IATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
            A+++   LR  K++G +KIP+ LEI Y+  P    G YPG+Y+F+   RM RPV +L  
Sbjct: 610 QASAIANTLRRWKVMGSDKIPRELEIGYI--PNTNGGQYPGIYMFSQAARMYRPVKHLGL 667

Query: 613 GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
             ++++G FEQ FM+I    ++   G++TH E + T+ LS +AN+ P  D NQSPRNMYQ
Sbjct: 668 DKLDYVGPFEQPFMEIACLPQDLISGVSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQ 727

Query: 673 CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
           CQM KQTMGTP    +Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+ISY
Sbjct: 728 CQMSKQTMGTPGTAIQYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISY 787

Query: 733 TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFF 792
           TGYDM+DAMI+NKSS+ERGF +G I+K+    L+   +  G          S  +    F
Sbjct: 788 TGYDMDDAMIINKSSHERGFGYGTIYKTKIHSLDEKDSRRGK---------SRREVTKLF 838

Query: 793 GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY---- 848
           G      +R      W+                 L  DGL ++GA++ E   + ++    
Sbjct: 839 GFAPGGEIRA----DWRAT---------------LDEDGLPHIGARVKEGSLVAAWHTVR 879

Query: 849 WKESENRYVTC-------RYSGKEEMCVEVVRM---SSGFTEGGSVTPNCAYIGYRIQRN 898
           +  + + YV         +Y   EE  ++ VR+    SG   G +++     + YRI R 
Sbjct: 880 YDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALS-----VKYRIPRK 934

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           P +GDKF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 935 PIIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYFGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1071


>gi|344299740|gb|EGW30093.1| hypothetical protein SPAPADRAFT_144076 [Spathaspora passalidarum
           NRRL Y-27907]
          Length = 1165

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 351/974 (36%), Positives = 515/974 (52%), Gaps = 121/974 (12%)

Query: 51  DKNFGKPPDKQNE--FLLTLGAPHIASFDFMLDEGLDLA----VEDIAPIEF-------E 97
           +  F  PP  ++   FL    APHI SF+ +            V+DI            +
Sbjct: 11  EARFQNPPADKSAYPFLADAVAPHIGSFNALTSGPGGGLLNLGVQDIGTKTIFDTAETSD 70

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             G  L++ +    +++P VPA        K +P+E R+  S Y     + V+WS +   
Sbjct: 71  RLGNKLQIRVESVQLAKPTVPATDKLSLNRKTFPSECRERMSTYRSRLMLKVSWSVNDGE 130

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
             +  +E G++PIML++ RCHL  L+P QL+E  E  DE GGYFIV G EKL+R+LI  R
Sbjct: 131 EVSEIREAGQIPIMLQTNRCHLEKLSPKQLVEAKEESDELGGYFIVNGIEKLIRMLIVQR 190

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RNHP+A+ R ++ NRG  ++  G+ IR V+ D+++  NVLH++ +G+  F FS RK+  L
Sbjct: 191 RNHPMALIRPSFGNRGASYTKYGIQIRCVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYL 250

Query: 278 LGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR----------------- 312
           + +   L  + +   +D ++F G +          ++L+  LR                 
Sbjct: 251 VPVTMIL--KALVETNDREIFDGIVGNDVDNSFLTDRLELLLRTYKSYNLYSKQETLAYL 308

Query: 313 ------------HLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                        ++++++   +L   +L HL +  DKF  L  M  KL+ +V G    D
Sbjct: 309 GDKFRVVFGATPDVSDIDVGKEVLKRIVLVHLPNNTDKFRMLLFMIRKLYSLVAGDCSPD 368

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------------- 404
           + D+   QE++ GG LY  ++K++       +K    SDI      +             
Sbjct: 369 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQITSDINRGVAINFNDRKYMTRVFSR 428

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
              +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++SHFR VHRGS+F 
Sbjct: 429 INENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFA 486

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+       ++Q+ S L  L
Sbjct: 487 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIA--TEDSDVSQVTSALAQL 544

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVY 580
           G+ P      +       V LDG+IVG+   +    +   LR  K+ G   +P  LEI Y
Sbjct: 545 GISPADSF--AAGPNLCCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGSHGLPLDLEIGY 602

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +  P    G YPGL++F G  RM+RPV  L     + +G FEQV+M++ +T +E    I 
Sbjct: 603 V--PPSTKGQYPGLFIFGGRSRMMRPVKYLPLNKQDILGPFEQVYMNVAVTPEEIENNIH 660

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           +H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP     ++   KLYRLQT
Sbjct: 661 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQT 720

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             +P  +   YD   MDNFP G NA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K 
Sbjct: 721 GQTPIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKV 780

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++L          T + G                                 FG D   
Sbjct: 781 EKVDLGQSRRRGDPITQHFG---------------------------------FGDDEWP 807

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM---SSG 877
           +  ++KL  DGL  +G K+ E DP+ +Y+ ++  +     Y   E   +E V++    +G
Sbjct: 808 ETWKEKLDDDGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDTG 867

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             EG  +T     I YRI R P +GDKF+SR GQKG+CS KWP  D+PF+++G+ PD++ 
Sbjct: 868 DQEGQMLT-----IKYRITRAPLIGDKFSSRHGQKGVCSRKWPQIDMPFSETGIQPDVII 922

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG  
Sbjct: 923 NPHAFPSRMTIGMF 936



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++A I+ G V+YQRLRHMV+DK+Q +
Sbjct: 975  QAGYNYHGNEPMYSGATGEELRADIYIGCVYYQRLRHMVNDKFQVR 1020


>gi|358367426|dbj|GAA84045.1| DNA-directed RNA polymerase I subunit beta [Aspergillus kawachii
           IFO 4308]
          Length = 1236

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 366/1011 (36%), Positives = 533/1011 (52%), Gaps = 157/1011 (15%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLD--EGLDLAVEDIAPIEFEIYG------ 100
           +K F  PP  Q  +     A  PH+ SF+ + D  + L+ A++DI    F I G      
Sbjct: 20  EKLFRNPPKDQTAYPALAAAIRPHVDSFNALFDGPKTLEAALKDIGTKTF-IDGEAETPE 78

Query: 101 ----------KTLKLNIVKAAISEP--KVPAGPVGIHFN----KYYPTEARQTRSVYSGP 144
                     K  K N +   +SE   + PA P    F       YP+E R+  + Y G 
Sbjct: 79  QKKARQAEGRKAPKRNKLHVRVSEVFLEKPALPPSNKFTSRNRNIYPSECRERHATYRGK 138

Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
               + W  +        +E+G+VPIML++ RCHL   TP +L+E  E  +E GGYFIV 
Sbjct: 139 LRARLEWRVNNGDWMESVRELGQVPIMLRTNRCHLEKATPNELVEHKEESEELGGYFIVN 198

Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS 264
           G+EKL+R+L+  +RN+P+AI R ++  RG  ++  GV IRSV+ D+++  NVLH++T+G+
Sbjct: 199 GNEKLIRMLVVGKRNYPMAIVRGSFVRRGHTYTKYGVQIRSVRPDQTSQTNVLHYLTDGN 258

Query: 265 ARFMFSHRKSMCLL-------------------GMMQSLHEEGI---------------- 289
             F FS RK+  L+                   G++ S   EGI                
Sbjct: 259 LTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSEGIKNTFVTDRVELLLRVY 318

Query: 290 -----HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WD 337
                H++   + + G+ F+  L       NE    ++ L   +LPHL +        +D
Sbjct: 319 KAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEF-LRKVVLPHLGNQNVTENQDYD 377

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------- 384
           KF  L  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK+              
Sbjct: 378 KFKMLLFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFQPILR 437

Query: 385 ---KSGTSAVLKESDIYAAFRA-------SSIESAMTNFLATGNVSAGKNSTLQLMQASG 434
                   A   +      F A        +I  A+  FL+TGN+ +   + L L Q SG
Sbjct: 438 DWSNRNAGATFTDPAFERDFLAKVVKRSNENIGGALEYFLSTGNLVS--PTGLDLQQPSG 495

Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
           + +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF CPVHTPDG+PCGLLN
Sbjct: 496 YTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGSPCGLLN 555

Query: 495 HLTTNCQISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
           HL   C I+    S V    IP  LV LG+   + V  S+ E ++ V LDGRI+GY   +
Sbjct: 556 HLAHKCLIAT---SDVDTTHIPKALVQLGVRSDSSV--SVTE-SVTVQLDGRIIGYCSPK 609

Query: 554 IATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
            A+++   LR  K++G +KIP+ LEI Y+  P    G YPG+Y+F+   RM RPV +L  
Sbjct: 610 QASAIANTLRRWKVMGSDKIPRELEIGYI--PNTNGGQYPGIYMFSQAARMYRPVKHLGL 667

Query: 613 GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
             ++++G FEQ FM+I    ++   G++TH E + T+ LS +AN+ P  D NQSPRNMYQ
Sbjct: 668 DKLDYVGPFEQPFMEIACLPQDLISGVSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQ 727

Query: 673 CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
           CQM KQTMGTP    +Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+ISY
Sbjct: 728 CQMSKQTMGTPGTAIQYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISY 787

Query: 733 TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFF 792
           TGYDM+DAMI+NKSS+ERGF +G I+K+    L+   +  G          S  +    F
Sbjct: 788 TGYDMDDAMIINKSSHERGFGYGTIYKTKIHSLDEKDSRRGK---------SRREVTKLF 838

Query: 793 GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY---- 848
           G      +R      W+                 L  DGL ++GA++ E   + ++    
Sbjct: 839 GFAPGGEIRA----DWRAT---------------LDEDGLPHIGARVKEGSLVAAWHTVR 879

Query: 849 WKESENRYVTC-------RYSGKEEMCVEVVRM---SSGFTEGGSVTPNCAYIGYRIQRN 898
           +  + + YV         +Y   EE  ++ VR+    SG   G +++     + YRI R 
Sbjct: 880 YDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALS-----VKYRIPRK 934

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           P +GDKF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 935 PIIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYFGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1071


>gi|323335118|gb|EGA76408.1| Rpa135p [Saccharomyces cerevisiae Vin13]
          Length = 1046

 Score =  587 bits (1512), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 348/891 (39%), Positives = 494/891 (55%), Gaps = 114/891 (12%)

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF-TKEVGRVPIMLKSKRCHLRNLTPAQ 186
           K YP+E+RQ  + Y G   + + WS +      F  ++ G +P+ML+S RCHL  ++P +
Sbjct: 13  KVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYE 72

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           L++  E  DE GGYFIV G EKL+R+LI  RRNHP+AI R ++ NRG  +S  G+ IRSV
Sbjct: 73  LVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSV 132

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI---- 302
           + D+++  NVLH++ +G   F FS RK+  L+ ++  L +   HT  D ++F G I    
Sbjct: 133 RPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMIL-KALCHTS-DREIFDGIIGNDV 190

Query: 303 ----FKEKLQYDLR-------HL------------------------NEVEICDYMLTNC 327
                 ++L+  LR       HL                        +++E+   +L   
Sbjct: 191 KDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRI 250

Query: 328 ILPHL--DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE- 384
           +L HL  D   DKF  L  M  KL+ +V G    D+ D+   QE++ GG LY  +LK++ 
Sbjct: 251 VLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKI 310

Query: 385 ---------------KSGTSAVLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNST 426
                            G +   K+    +        +I S M  FL+TGN+ +   S 
Sbjct: 311 DEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVS--QSG 368

Query: 427 LQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
           L L Q SG+ ++AE IN  R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPD
Sbjct: 369 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPD 428

Query: 487 GTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRI 546
           G+PCGLLNH    C+IS       +++IPS+L SLG+ P +    + P     V +DG+I
Sbjct: 429 GSPCGLLNHFAHKCRIS--TQQSDVSRIPSILYSLGVAPASHTFAAGPS-LCCVQIDGKI 485

Query: 547 VGYILDQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
           +G++  +    +   LR  K+ G+   +P  LEI Y+  P    G YPGLYLF G  RML
Sbjct: 486 IGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYV--PPSTRGQYPGLYLFGGHSRML 543

Query: 605 RPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
           RPV  L     + +G FEQV+M+I +T +E    + TH E + T+ LS LANL P  D N
Sbjct: 544 RPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFN 603

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRNMYQCQMGKQTMGTP +   ++   KLYRLQT  +P  +   YD   MDNFP G N
Sbjct: 604 QSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFN 663

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           A+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K+  ++L    N     T + G    
Sbjct: 664 AVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFG---- 719

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
                                        FG D   K   +KL  DGL Y+G  + E DP
Sbjct: 720 -----------------------------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDP 750

Query: 845 MYSYWKESENRYVTCRYSGKEEMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPT 900
           + +Y+ ++ N+     Y   E   +E V +    S+ F E  +V+     I YRI+R P 
Sbjct: 751 ICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQ 805

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKF+SR GQKG+CS KWP  D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 806 IGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMF 856



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           ++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 895 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 940


>gi|301119239|ref|XP_002907347.1| DNA-directed RNA polymerase I subunit RPA2, putative [Phytophthora
           infestans T30-4]
 gi|262105859|gb|EEY63911.1| DNA-directed RNA polymerase I subunit RPA2, putative [Phytophthora
           infestans T30-4]
          Length = 1179

 Score =  586 bits (1511), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 354/975 (36%), Positives = 518/975 (53%), Gaps = 126/975 (12%)

Query: 58  PDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK-TLKLNIVKAAISEPK 116
           P K NE L  L +PH+ SF+F L EGLDLAV D+  +  E+  +  + + I  A I  P 
Sbjct: 34  PAKSNEKLQKLVSPHLDSFNFFLTEGLDLAVADMCKVPVELPNQHRMDIWIENAQIGYPT 93

Query: 117 VPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG-GTFTKEVGRVPIMLKSK 175
                 G    K  P+E RQ    Y+ P  VT+A S+ G        + VG +PIM++SK
Sbjct: 94  TENQITGEQ--KLLPSECRQRGVSYTAPLVVTLARSFGGSQNVERLQRVVGEIPIMVRSK 151

Query: 176 RCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL 235
           RCHL  + P  L++  E  +E GGYFI  G+E+ VRLL   RR+H +A++R A+ NRG L
Sbjct: 152 RCHLNGMAPTDLVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGDL 211

Query: 236 FSDLGVYIRSVKRDESATNNVLHFVTNGSA--RFMFSHRKSMCLLGM------------- 280
           +++L V+++ VKRD+SA    +H++ +G+A  RF    ++ M  +G+             
Sbjct: 212 YTELAVFMKCVKRDQSAVTVTVHYLQDGNATVRFGVKKQEFMIPVGLVLKALYPLTDREI 271

Query: 281 ----MQSLHEE-----------------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEI 319
               ++  HE                   ++T+ ++  + G+ F+  + Y   ++N VE+
Sbjct: 272 YERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYDNMNNVEV 331

Query: 320 CDYMLTNCILPHLDDYWD------KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
              +L + +  H+           + LCL  M  KL+   +G V  D+ DS+M  E++  
Sbjct: 332 GSKLLDDFLFVHIPKGEKGRTQKVELLCL--MLRKLYAFAKGDVPEDNADSVMNHELLLP 389

Query: 374 GSLYLQLLKKEKSGTSAVLKESDIYAAF-------------------RASSIESAMTNFL 414
           G LYL ++ KEK   S V   ++I                       R  +I +AMT FL
Sbjct: 390 GHLYLMIM-KEKLQESLVAMRANILKETQNKKRAVVMDQVFLRKMWERTPNIGNAMTYFL 448

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
            TGN+ +  +S L L+Q +G+ I+AE +N  RY SHFR+VHRG +F EM+++  R+L  D
Sbjct: 449 NTGNLRS--SSGLDLLQIAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVRKLLPD 506

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQI--------SEYIPSKVLAQIPSVLVSLGMLPL 526
           +WGF+CPVHTPDG+PCGLLNHL   C++         +Y+  +V  ++   L SLGM+P 
Sbjct: 507 SWGFLCPVHTPDGSPCGLLNHLAVECELVCHPAFKADDYLQQEV--KLARFLASLGMIPT 564

Query: 527 TPVIQS---IPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV-------GEKIPKSL 576
           +        +P   L VM++G+++G    ++   +   LR +K            I  +L
Sbjct: 565 SGYADGALIVPYSYLPVMMNGKVLGGAPAEVCKRIAEVLRKVKSAKSSEERDANGIVSNL 624

Query: 577 EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY 636
           E+  L  P +G G +PGLYL     RM RPV  +    IE+IG  EQVFMDI  T  +  
Sbjct: 625 EVC-LILPTRG-GPFPGLYLSADAARMSRPVKQMDTKRIEYIGPMEQVFMDIACTKDDIR 682

Query: 637 PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
           P  TTH E+  T+ LS +A+L P  D NQSPRNMYQCQM KQTMGTP  +  ++   K+Y
Sbjct: 683 PA-TTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSIVHRSDNKMY 741

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
           R+Q+P  P  +        +D +P+GTNA+VAVISYTG+DMEDAMILNKSSYERGF H  
Sbjct: 742 RIQSPQIPIVQNERLREYQLDEYPLGTNAVVAVISYTGFDMEDAMILNKSSYERGFGHAS 801

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           ++K + +++ S           +G  GS    + F  +                      
Sbjct: 802 VYKQLTVDISS-----------NGKQGSATSKKYFSNI--------------------KT 830

Query: 817 DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           D +      KL  DG  ++G  +N  DP+ S+  E+       ++   E   +E V M  
Sbjct: 831 DGSGDYCSTKLDRDGFPHIGQVVNHGDPVASWIDETTGLPSVQKHKESEPAIIEQVNMIG 890

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
             +     T   A I  R  RNPT+GDKF+SR GQKG+ S+ WP  D+PF++SG+ PDI+
Sbjct: 891 NSSSSSEFTK--ASIKLRFCRNPTIGDKFSSRHGQKGVMSILWPQADMPFSESGISPDII 948

Query: 937 FNPHGFPSRMTIGFL 951
            NPH FPSRMT+G L
Sbjct: 949 INPHAFPSRMTVGML 963



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GYNY G+E +YSG+ G++MQA I+ GVV+YQRLRHMVSDK Q +
Sbjct: 1002 EHGYNYMGSEPLYSGISGTVMQADIYIGVVYYQRLRHMVSDKSQVR 1047


>gi|403416652|emb|CCM03352.1| predicted protein [Fibroporia radiculosa]
          Length = 1192

 Score =  586 bits (1510), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 360/956 (37%), Positives = 533/956 (55%), Gaps = 97/956 (10%)

Query: 51  DKNFGKPPDKQ------NEFLLTLGAPHIASFDFMLDEG------------LDLAVEDIA 92
           ++ F  PP         NEF+     PHI SF+ + D+             L L +++I 
Sbjct: 22  EQQFKNPPTDGAAVPILNEFV----TPHIESFNALFDDSGLPAGDGDGRGLLSLGIKEIG 77

Query: 93  P-IEF----EI--------YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRS 139
             + F    EI        +G  L +   +  +  P+V      +  NK YP+EAR+  +
Sbjct: 78  TRVVFDGKGEIGAESGQGGWGNRLSMWYEQVVVGRPQVSDRDHRVRDNKVYPSEARERLT 137

Query: 140 VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
            Y G   V + W  +       TK+ G +P+M++S RC+LR ++ A+L+ + E  +E+GG
Sbjct: 138 SYRGRMVVKLCWRVNDGPIEIETKDCGLLPLMVRSVRCNLRGMSSAELVSKHEESEEFGG 197

Query: 200 YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHF 259
           YFI+ G+E+L+R LI  RR+H I++ R ++ NRG  ++   V IR V+ D+++  N LH+
Sbjct: 198 YFIINGNERLIRYLILPRRHHVISLVRPSFANRGPSYTAYAVQIRCVRPDQTSVTNTLHY 257

Query: 260 VTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEI 319
           ++NGSA   F+ RK   ++ +M  L  + + +  D ++F G + ++     L    E+ +
Sbjct: 258 LSNGSAMLRFNWRKQEYVIPIMLIL--KALVSASDKEIFEGVMMQDYEDTFLTDRVELLL 315

Query: 320 CDYMLTNCILPH--LDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY 377
             + + + +     L+   +KF  + +M     +   G V L  +      E++  G+LY
Sbjct: 316 RSFKMYSLVTGDQCLEFLGNKFRVVLNMPEDWTNKAIG-VWLVQKIHASEAEVLLPGTLY 374

Query: 378 LQLLKKE--------KSGTSAVLKESDIYAAF-----------RAS-SIESAMTNFLATG 417
             ++K+          +G    +  S+    F           R +  I S M NFLATG
Sbjct: 375 GMIIKERLEEALNGFANGIRQDVNRSEASVDFFDKRYIRKVLGRTNFDIGSRMANFLATG 434

Query: 418 NVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWG 477
           N+ +   + L L QASGF I+AE +N  RY+SHFR++HRG++F E++++  R+L  +AWG
Sbjct: 435 NLIS--PTGLDLQQASGFTIVAEKLNWQRYISHFRSIHRGAFFAELKTTTVRKLLPEAWG 492

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML-PLTPVIQSIPEQ 536
           F+CPVHTPDG+PCGLLNHL+  C+I    P+ V+  IP++L + GM     P I     +
Sbjct: 493 FLCPVHTPDGSPCGLLNHLSRTCRIVTE-PATVI-HIPALLAAHGMTQAFAPSIDG--RR 548

Query: 537 ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLY 595
            L V LDG+++G+    +   L   LR+ K   + +IP  LEI ++  P    G YPGLY
Sbjct: 549 NLCVQLDGKLIGWAPAPVLQQLATNLRIWKTEHKHEIPLDLEIGFV--PVSKAGQYPGLY 606

Query: 596 LFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLA 655
           +F+   RM+RPV  LA G  + IG+FEQV+MDI  T +E   G++TH E S T+FLS LA
Sbjct: 607 IFSSRARMMRPVKYLANGRDDQIGSFEQVYMDIACTPEEIEEGVSTHVEHSPTNFLSILA 666

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
           NL P  D NQSPRN+YQCQMGKQTMGTP    R++   KLYRLQ+  SP  RP  ++T  
Sbjct: 667 NLTPFSDFNQSPRNIYQCQMGKQTMGTPATALRHRTDNKLYRLQSGQSPVVRPALHNTYG 726

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
           MD+FP GTNAIVAVISYTGYDMEDAMILNKS++ERGF +G ++KS  ++L+         
Sbjct: 727 MDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQTVDLKD-------- 778

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYV 835
               G   +     + FG  +  R      DK                 D LG DGL +V
Sbjct: 779 --MPGTSRNSSTPTLHFGFGYDIR---TFGDK------------QHPCCDFLGDDGLPFV 821

Query: 836 GAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRI 895
           G +L+  DP+ +Y  ++  R    +Y G E   V+ VR+    ++ G       +I  RI
Sbjct: 822 GVRLSAGDPLAAYVDDTTGRTKFVKYKGDEVAYVDTVRLLG--SDAGDSELQKVHISLRI 879

Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R+P +GDKF+SR GQKG+CS KWPA D+PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 880 TRSPVIGDKFSSRHGQKGVCSQKWPAIDMPFSESGMQPDVIINPHAFPSRMTIGML 935



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            L +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV DK+Q +     DP  +
Sbjct: 973  LAAGYNYYGNEPMYSGITGQEFAADIYIGVVYYQRLRHMVLDKFQVRTTGPVDPVTR 1029


>gi|281210835|gb|EFA85001.1| RNA polymerase I [Polysphondylium pallidum PN500]
          Length = 1109

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 342/958 (35%), Positives = 525/958 (54%), Gaps = 120/958 (12%)

Query: 62  NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPI-------EFEIYGKTLKLNIVKAAISE 114
           +E L  L  PHI S+DF  ++ L + V  + P+         +   K  +L      IS+
Sbjct: 2   SEELRQLVTPHIDSYDFFAEKALSIIVAGLPPVYINNRAENADSTQKHWRLKFKDVTISK 61

Query: 115 PKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAW---SWDGKAGGTFTKEVGRVPIM 171
           P      +     + +PTE+RQ+ + YS P   TVA        +   T+  ++G +P+M
Sbjct: 62  P------IKSDNRQLFPTESRQSGTSYSAPMVGTVALLKSPTSDEEHETYNVQLGNIPVM 115

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           + S RCHLR LT AQL++  E   E GGYFI+ G+EK++R+L+ N+ NHPIA+ R  W N
Sbjct: 116 VNSSRCHLRGLTSAQLVKNHEEELEVGGYFIINGNEKVMRMLVANKANHPIALTRQGWTN 175

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK-------SMCLLGMMQSL 284
           RG  ++  GV +RSV+ D S+  N LH++++G   F F  R+       ++ L  ++ + 
Sbjct: 176 RGPGYTKFGVTLRSVRPDRSSLTNNLHYISDGQITFRFYFRRQEYFIPVTLLLKALVDTT 235

Query: 285 HEE-----------------------------GIHTQHDSKVFFGQIFKEKLQYDLRHLN 315
            +E                             G++T+ +   + G  ++ K        N
Sbjct: 236 DKEIFTQIVQGDFENTFLTDRVELTLREQKVKGLNTKDEILDYIGSRYRHKANLPDSFTN 295

Query: 316 EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM---- 371
           + +I +YM+ N  L HL DY DKF  L  M  KL+ VVQG    D+ D+    E++    
Sbjct: 296 Q-QIAEYMIDNFFLVHLPDYRDKFNILIVMIQKLYAVVQGKNGCDNIDATSFHEVLLPER 354

Query: 372 ------TGGSLYLQLLKKEKSGTSAVLKESDIYAAF-RASSIESAMTNFLATGNVSAGKN 424
                    ++YL+ +  +K+    + ++     AF R+ +I      FLATGN+ +  +
Sbjct: 355 LTEYLEVSRAMYLKAINAQKT----INEDLAFKKAFDRSLNIGEKFNYFLATGNLVS--S 408

Query: 425 STLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
           S L L Q SGF I+A+ +N +RY+SHFR++HRG++F  M+++  R+L  +++GF+CPVHT
Sbjct: 409 SGLDLQQTSGFAIIADKLNFIRYISHFRSIHRGAFFATMKTTSIRKLMPESFGFLCPVHT 468

Query: 485 PDGTPCGLLNHLTTNCQISEYIPSKV------LAQIPSVLVSLGMLPLTPVIQSIPEQAL 538
           PDG PCGLLNHL+ NC I++  PS+       +  +PS L++ G+  +  V  +    +L
Sbjct: 469 PDGAPCGLLNHLSANCIITK-DPSQDEKSKEGVRLLPSFLMAHGVTSID-VTTNFQPNSL 526

Query: 539 MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYL 596
            VML+G+++G I D +A  LV  LR LK  G++  +P+++E+ Y  + +   G YPG++L
Sbjct: 527 PVMLNGKLIGRINDGLAQDLVDLLRYLKSTGDEKAVPQTMEVAYAPKEQSKGGQYPGIFL 586

Query: 597 FTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
           FT   R +R V+NL +G  E IG  EQ++M+I I M E     TTH ELS T   S  AN
Sbjct: 587 FTTGARFMRTVINLKSGKNELIGPQEQLYMNISI-MPEEVRDSTTHCELSPTAMFSVEAN 645

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           L P  D NQSPRNMYQCQM KQTMGTP  ++ Y+   KLY++Q    P     +     +
Sbjct: 646 LTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYAYRTDNKLYKVQNIQRPIVATENQSKYRI 705

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           +++P G NA++AV+S TGYDMEDAMI+NKS++ERGF HG ++K+ F++++ G        
Sbjct: 706 NDYPHGCNAVIAVVSNTGYDMEDAMIINKSAFERGFGHGSVYKNEFVDIDEG-------- 757

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVS--DKWQTKDYFGRDPANKALEDKLGPDGLVY 834
                     ++++  G     R  +     D+W                  +  DGL Y
Sbjct: 758 ----------KSRLEMGKTSISRPNYTSDNLDQW------------------IDRDGLPY 789

Query: 835 VGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY-IGY 893
           +G  +   +P Y+ +   EN+ VT  Y GKE+  +E + +  G T+  + T    + +  
Sbjct: 790 IGRLIKPGEPYYTVFSTIENKQVTKNYKGKEDAWIEEIMILGGSTQVRASTMITKFVVKL 849

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R  RNP +GDKF+SR GQKG+ S  WP  ++PFT+SGL PD++ NP+ FPSRMTIG L
Sbjct: 850 RFDRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGLKPDVIINPNAFPSRMTIGML 907



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           ++G+NYYG E MYSG  G    A IFFG+ +YQRLRHMV DK+Q +
Sbjct: 946 QAGFNYYGNEPMYSGTTGEEFHANIFFGICYYQRLRHMVKDKYQVR 991


>gi|385302821|gb|EIF46931.1| dna-directed rna polymerase i [Dekkera bruxellensis AWRI1499]
          Length = 1168

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 356/975 (36%), Positives = 521/975 (53%), Gaps = 123/975 (12%)

Query: 52  KNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIAPIEF------EI 98
           + F  PP  +  + L   A   HI SF+  L EG     L++ V+DI           + 
Sbjct: 13  QRFQNPPKDKTAYPLLHEAVSQHIGSFN-ALTEGTDGGLLNMGVKDIGSKTIFDSNDQKR 71

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            G  LK+ +    IS+P VP           YP+E R+  S Y G   + V W+ +    
Sbjct: 72  LGNKLKIRVDSVQISKPMVPTTDKISLVRTVYPSECRERLSSYRGRLLLKVTWNVNDGEE 131

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
            +  ++ G +P+M++S RC+L  ++P +L+E  E  DE+GGYFIV G EK++R+LI  RR
Sbjct: 132 TSEVRDAGLLPVMVQSNRCNLEGMSPEELVEHREESDEFGGYFIVNGIEKIIRMLIVPRR 191

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N+P+AI R+++ NRG  +S  GV IR V+ D++A  NVLH++ +G+  F FS RK+  L+
Sbjct: 192 NYPMAIVRSSFSNRGASYSSYGVQIRCVRPDQTALTNVLHYLNDGNVTFRFSWRKNEYLV 251

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR-----HLN---------- 315
            ++  L    +   +D ++F G +          ++L+  LR      LN          
Sbjct: 252 PVVMILR--ALIESNDREIFDGIVGSDVENSFLTDRLELLLRTYKHYKLNSKKEALAYIG 309

Query: 316 --------------EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
                         +V++ + +L   +L HL D  DKF  L  M  KL+ +V G    ++
Sbjct: 310 NKFRVVFAATPDRTDVDVGEEVLRRIVLVHLSDNRDKFRMLLFMVRKLYALVAGDCTPEN 369

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS-------------- 404
            DS    EI+ GG LY  ++K++       ++   + DI      +              
Sbjct: 370 PDSTQNHEILLGGFLYGMIIKEKIDEYLQSIRTQIQVDINRGVAVNFKDPRYMHRVLMRV 429

Query: 405 --SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
             +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  R+++HFR VHRG++F  
Sbjct: 430 NENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFHRFLAHFRMVHRGAFFAS 487

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSL 521
           ++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   CQ++ E + +   + IP  +  L
Sbjct: 488 LKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAYKCQVTTEQLDT---SAIPEAVYKL 544

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK--IPKSLEIV 579
           G+ P              V LDGRI+G+   +    +   LR  K+   +  IP  LEI 
Sbjct: 545 GVSPTLSAAAISGPNVCCVQLDGRIIGWCSHKQGKYVADTLRFWKVESSEHGIPLELEIG 604

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
           Y+  PE   G YPGLYLF G  RM+RPV  L     + +G FEQV+M+I +   E    +
Sbjct: 605 YV--PESQNGQYPGLYLFGGRSRMIRPVKYLPLNKKDIVGPFEQVYMNIAVEPNEIEKNV 662

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TH E S T  LS LANL P  D NQSPRNMYQCQMGKQTMGTP +   ++   KLYRLQ
Sbjct: 663 HTHVEFSPTYILSTLANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQ 722

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
              SP  +   YD   MDNFP GTNA+VAVI+YTGYDM+DAMILNKS+ ERGFA+G ++K
Sbjct: 723 CGESPIVKAGLYDDFGMDNFPNGTNAVVAVIAYTGYDMDDAMILNKSTEERGFAYGSMYK 782

Query: 760 SMFIELESGYNYYGTETMYSGVD---GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           +  I+L              G+D   G  +     FG  H+        ++W+       
Sbjct: 783 TEKIDL--------------GMDRRRGDPITQHFGFGEDHW-------PEEWR------- 814

Query: 817 DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
                   ++L  DG+ Y+G+ + E DP+ +++ +   R     + G E   ++ V++  
Sbjct: 815 --------ERLDEDGMPYIGSFIKEGDPICAFYDDVLGRTRIKHFKGSESGFIDEVKLLG 866

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              +  +     A I +R++R P +GDKF+SR GQKG+CS KWP  D+PFT+SG+ PDI+
Sbjct: 867 --DDNAAKECQIATIKFRMRRGPIIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDII 924

Query: 937 FNPHGFPSRMTIGFL 951
            NPH FPSRMTIG L
Sbjct: 925 INPHAFPSRMTIGML 939



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNYYG E MYSGV G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 979  AGYNYYGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKFQVR 1023


>gi|440640399|gb|ELR10318.1| DNA-directed RNA polymerase I subunit RPA2 [Geomyces destructans
           20631-21]
          Length = 1193

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 360/996 (36%), Positives = 533/996 (53%), Gaps = 139/996 (13%)

Query: 52  KNFGKPPDKQNEFLLTLGA--PHIASFD--FMLDEGLDLAVEDIAPIEF-------EIYG 100
           + F +PP   + +     A  PHI SF+  F  D  L  +++DI    +          G
Sbjct: 12  RAFPQPPQDHSAYPALQAAIEPHINSFNAVFEKDGLLAQSLKDIGAKTYLDGDQRLGPAG 71

Query: 101 KT-LKLNIVKAAISEPKVPAG-PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
           K  L + I +  + +  +PA         +  P E R+    Y G  +  + +  +G   
Sbjct: 72  KNKLTVRIKEVFVEKAMLPASNKFSTRNREIMPAECRERHVTYRGKMSARLEYRINGGDP 131

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             F +E+G++P+MLKS +CHL N +PA L+ER E  +E GGYF+V G EKL+RLLI NRR
Sbjct: 132 VEFIRELGQIPLMLKSNKCHLENNSPALLVERKEESEELGGYFVVNGIEKLIRLLIVNRR 191

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R +++ RG  ++     IRSV+ D+++  NVLH++ +G+  F FS RK+  L+
Sbjct: 192 NFPMAIIRPSFEGRGPTYTKFATLIRSVRPDQTSQTNVLHYLDDGNVTFRFSWRKNEFLV 251

Query: 279 GMM----------------------------------------QSLHEEGIHTQHDSKVF 298
            +M                                        ++    G++T+  ++ +
Sbjct: 252 PVMMIMKALVETNDREIFEDLVGGAGSKGANNTFLTDRVELLLRTYKAYGLYTKSKTRAY 311

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            G+ F+  LQ    ++++ ++    L   ++PHL +         DKF  L  M  KL+ 
Sbjct: 312 LGEKFRIVLQVP-DNMSDYDVGTEFLRKIVMPHLGNVDVTEVQDADKFQMLLFMIRKLYS 370

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS-----------------------GT 388
           +V G   LD+ D++  QEI+ GG LY  ++K+                           +
Sbjct: 371 LVAGDCSLDNPDAVQNQEILLGGFLYGMIIKERLDDWLSTALRLGLREYTRRNPANNFAS 430

Query: 389 SAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
              LK+       R + ++  A+  F++TGN+ +   + L L Q SGF ++AE IN +R+
Sbjct: 431 PEFLKDFPTKIFGRTNEAVGQALEYFMSTGNLIS--PTGLDLQQTSGFTVVAEKINFLRF 488

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C+I  +  
Sbjct: 489 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKILTH-- 546

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
                 +PS+ V LG++  +    +  +++++VMLDG+I+G+   + +  +   LR  K+
Sbjct: 547 GVDAGALPSLAVDLGVVGFS---SASTDESVVVMLDGKILGWCTPKQSLRIADTLRFWKV 603

Query: 568 VG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
            G   +P  LEI Y+  P    G YPG+YL+TGP RM+RPV  L     +W+G  EQ FM
Sbjct: 604 EGTHNVPVELEIAYV--PASHGGQYPGVYLYTGPSRMVRPVKYLPLDKEDWVGPLEQPFM 661

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
            I +T +E   G TTH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP   
Sbjct: 662 SIAVTEQEIDSGETTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTA 721

Query: 687 WRYQGVGKLYRLQTPASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
            RY+   K YRLQT  +P  R P+H D    DNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 722 LRYRTDNKSYRLQTGQTPIVRAPLHND-YGFDNFPNGFNAVVAVISYTGYDMDDAMIINK 780

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGF HG I+K    EL+ G               S  +    FG         +V 
Sbjct: 781 SAHERGFGHGTIYKVKKYELDEGQK-----------SRSAKKVSKLFGFAP----GGLVK 825

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM---YSYWKESENRYVTC--- 859
            +W            KAL D+   DGL +VG  + E DP+   ++   ++  + V     
Sbjct: 826 SEW------------KALIDE---DGLPFVGRLVKEGDPVCAWHTVTTDANGKLVNRDGI 870

Query: 860 ----RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGIC 915
               +Y   E   VE VR+    +E G+       + +R+ R+PT+GDKF+SR GQKG+C
Sbjct: 871 THFEKYKEGEMTFVEEVRVIG--SENGNEPAQMISVKFRVPRSPTIGDKFSSRHGQKGVC 928

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           S KWPA D+PF++SG+ PDI+ NPH FPSRMTIG  
Sbjct: 929 SQKWPAGDMPFSESGMQPDIIINPHAFPSRMTIGMF 964



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ G+V+YQRLRHMV+DK+Q +
Sbjct: 1002 MKAGYNYHGNEPMYSGITGEELHADIYVGLVYYQRLRHMVNDKFQVR 1048


>gi|336265681|ref|XP_003347611.1| hypothetical protein SMAC_04919 [Sordaria macrospora k-hell]
 gi|380096478|emb|CCC06526.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1239

 Score =  583 bits (1504), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 361/1000 (36%), Positives = 533/1000 (53%), Gaps = 143/1000 (14%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFML-DEG----LDLAVEDIAPIEF------- 96
           +K F  PP  +  +     A  PHI SF+ +  D+G    LD A+ +I    F       
Sbjct: 24  EKLFRDPPTDRTAYPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERA 83

Query: 97  EIYGKTLKLNIVKAAIS--EPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
           +  GK  KL I   +I   + +VP         + +P E R+    Y G  + T  +  +
Sbjct: 84  DPAGKN-KLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRIN 142

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                 F +E+G++PIM+KS +CHL+N +PAQL+ RGE  +E GGYF+V G EKL+R+L+
Sbjct: 143 DGEPHEFVRELGQMPIMVKSNKCHLQNNSPAQLVARGEESEELGGYFVVNGIEKLIRMLL 202

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS 274
            NRRN P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++++G+  F FS RK+
Sbjct: 203 MNRRNFPLAIVRPSFQNRGATYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKN 262

Query: 275 MCLLGMM----------------------------------------QSLHEEGIHTQHD 294
             L+ +M                                        ++  + G++++  
Sbjct: 263 EYLIPVMMIMKALVETNDREIFEGLVGPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQ 322

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTC 347
           ++ + GQ F+  L      +++ E+    L   +L HL           DKF  L  M  
Sbjct: 323 TRAYLGQKFRVVLGV-ADTMSDYEVGTEFLRKIVLVHLGCQDVTEQQDADKFNMLLFMCR 381

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------------K 385
           KL+ +V G   +D+ D++  QEI+ GG LY Q++K+                        
Sbjct: 382 KLYALVAGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTV 441

Query: 386 SGTSAVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           S  S    +    A FR ++  I  ++  FL+TGN+ +   S L L Q SGF ++AE +N
Sbjct: 442 SFQSETFTKDFPIAIFRRANENIGQSLEYFLSTGNLVS--PSGLDLQQVSGFTVVAEKLN 499

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
            +R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I 
Sbjct: 500 FLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIM 559

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           ++++ +   + IP +   LG++ ++    S   ++++VMLDGRIVG+       S+   L
Sbjct: 560 TDHVDA---STIPRLAFELGVVNISSAATS---ESVVVMLDGRIVGWCTPDECKSIAETL 613

Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
           R  K+ GE  +P  LEI Y+  P    G YPGLY+ + P RM+RPV  L     +++G  
Sbjct: 614 RYWKVNGENGVPLQLEIGYV--PPSNGGSYPGLYMSSQPARMVRPVKYLPLAKEDFVGPQ 671

Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
           EQ +M I  T +E  PG +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMG
Sbjct: 672 EQPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMG 731

Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
           TP      +   K+YRLQT  +P  R   ++T   DNFP GTNA+VAVISYTGYDM+DAM
Sbjct: 732 TPGTALSRRTDNKMYRLQTGQTPIVRAPLHNTYGFDNFPNGTNAVVAVISYTGYDMDDAM 791

Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           I+NKS++ERGF HG I+K+  + L+        +++              FG      +R
Sbjct: 792 IINKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVK-----------MFGFAPNSTIR 840

Query: 802 HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE-------N 854
                              ++  D L  DGL  VG  L E D + ++   S        N
Sbjct: 841 -------------------ESTRDTLDNDGLPRVGRLLREGDVLCAWHTVSADYNGQLVN 881

Query: 855 RYVTC---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
           R       RY   E+  VE VR+     + G+       I  RI R+P +GDKF+SR GQ
Sbjct: 882 RDGITHYERYKDSEDAFVEEVRVIGA--DNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQ 939

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG+CS KWPA D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 940 KGVCSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMF 979



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GYNY+G E +YSG+ G   QA I+ GVV+YQRLRHMV+DK+Q +      P      
Sbjct: 1017 MKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPI 1076

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                  G + VG    ERD + ++      ++R + C    K  MC
Sbjct: 1077 KGRKKGGGIRVGEM--ERDALLAHGTSFLLQDRLLNCSDYSKSWMC 1120


>gi|321259894|ref|XP_003194667.1| DNA-directed RNA polymerase I polypeptide 2 [Cryptococcus gattii
           WM276]
 gi|317461139|gb|ADV22880.1| DNA-directed RNA polymerase I polypeptide 2, putative [Cryptococcus
           gattii WM276]
          Length = 1192

 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 359/983 (36%), Positives = 529/983 (53%), Gaps = 127/983 (12%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFML-DEG-------LDLAVEDIA-PIEFEI- 98
           ++ F  PP   ++   L  L APHI+SF+ ++ D+G       L + VEDI   + F+  
Sbjct: 30  ERQFRHPPPTASDVPALDELVAPHISSFNALIEDDGNPGAKGLLQMGVEDIGEKVVFDGK 89

Query: 99  -----YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW 153
                 G  L   I + A+S+P VP         + +PTEAR+  + Y     V + W+ 
Sbjct: 90  GSEGGLGTKLSYRIDRVALSKPLVPEKDKLAVERRVFPTEARERLATYRSKLTVNIKWTV 149

Query: 154 DGKAGG----TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
             + G        KE G +P+M++S RC+L+ L   +LI+  E    +GGYFIV G+EK+
Sbjct: 150 TDEDGNRKEFEEIKECGLLPVMVRSIRCNLQGLPATELIKHSEESTSFGGYFIVNGNEKI 209

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
           +R L+  RR++PI + R ++  RG  ++  G  IR V+ DE+A  N +H+++NG A   F
Sbjct: 210 IRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPDETACTNTIHYLSNGGATLRF 269

Query: 270 SHRKSMCLL-------------------GMMQSLHEE-----------------GIHTQH 293
           + RK   ++                   G++Q  ++                  G+HT  
Sbjct: 270 AWRKVEYMIPLMLILKALVDASDKEIFEGLIQGEYDNTFLTDRVELLLRGQKSWGLHTGA 329

Query: 294 DSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVV 353
               + G+ F+  L       N V++  Y+L   +L HL    DKF  L  M  KL+  V
Sbjct: 330 QCLDYLGEKFRVVLNVPDDWSN-VQVGGYLLRKVVLVHLPAPRDKFRMLLFMLRKLYSQV 388

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAVLKESDI 397
            G    D+ DS    E++  G LY  ++K+                 + G +    +   
Sbjct: 389 SGATCPDNPDSPQHHEVLLPGFLYGMIIKERFDDCLNAVKSQIQLDLRDGKARSFMDPKY 448

Query: 398 YAAFRASS---IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV 454
           + +  + +   I S ++ FLATGN+ +   + L L Q SGF I+AE +N  RY+SHFR +
Sbjct: 449 FTSVLSKTNWDIGSKLSYFLATGNLVS--PTGLDLQQTSGFTIVAEKLNFYRYLSHFRCI 506

Query: 455 HRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
           HRG++F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  CQI     S  ++ I
Sbjct: 507 HRGAFFAELKTTTVRKLMPESWGFLCPVHTPDGSPCGLLNHLSHTCQI--VTSSLDVSHI 564

Query: 515 PSVLVSLGMLPLTPVIQSIPEQALMV--MLDGRIVGYILDQIATSLVPKLRMLKIVGE-K 571
           P++L + GM   T V  S  +   MV   LDG+++GY     A  L  +LR LK   + K
Sbjct: 565 PALLSAQGM---TQVFASSIDGRRMVCIQLDGKVIGYASPMKAKQLANRLRKLKTEADPK 621

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
           +P  LEI Y+  P    G YPGLYLF+   RM+RPV  L  G ++ +G+FEQV+MD+ IT
Sbjct: 622 VPLDLEIGYV--PVTKGGQYPGLYLFSSRSRMMRPVTYLENGKLDHLGSFEQVYMDVAIT 679

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            +E   G+++H EL  T  LS +ANL P  D NQSPRNMYQCQMGKQ+MGTP      + 
Sbjct: 680 KEEIEKGVSSHLELDPTSMLSVIANLTPFSDFNQSPRNMYQCQMGKQSMGTPSTAISKRT 739

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             K+YRLQ+  +P  RP  ++    DNFP GTNAIVAVISYTGYDMEDAMILNKS++ERG
Sbjct: 740 DNKMYRLQSGQTPVVRPDLHNHYGFDNFPNGTNAIVAVISYTGYDMEDAMILNKSAHERG 799

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ--IFFGVVHYQRLRHMVSDKWQ 809
           F +G ++K+   +L+             GV G+   A+  + FG+               
Sbjct: 800 FGYGTVYKADIFDLK-------------GVPGASRSAKPTLHFGL--------------- 831

Query: 810 TKDYFGRD-PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC 868
                GRD   +    + +  DGL  +G K+   DP+ +Y  ++  R    +Y G E   
Sbjct: 832 -----GRDVKEDHDARNIISQDGLPIIGTKVKTGDPLCAYIDDTTGRTKFHKYKGDETAF 886

Query: 869 VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
           ++ VR+    ++ G       +I  RI R+P +GDKF+SR GQKG+CS K+PA D+PF++
Sbjct: 887 IDEVRVLG--SDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKFPAIDMPFSE 944

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           SG+ PD++ NPH FPSRMTIG  
Sbjct: 945 SGMQPDVIINPHAFPSRMTIGMF 967



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +GYNYYG E MYSG+ G    A I+ G+V+YQRLRHMV+DK+Q +     DP  +
Sbjct: 1007 AGYNYYGNEPMYSGITGEEFHADIYLGLVYYQRLRHMVNDKFQVRTTGPVDPLTR 1061


>gi|58268448|ref|XP_571380.1| DNA-directed RNA polymerase i polypeptide 2 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134112740|ref|XP_774913.1| hypothetical protein CNBF0780 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257561|gb|EAL20266.1| hypothetical protein CNBF0780 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227615|gb|AAW44073.1| DNA-directed RNA polymerase i polypeptide 2, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 1193

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 357/983 (36%), Positives = 527/983 (53%), Gaps = 127/983 (12%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFML-DEG-------LDLAVEDIA-PIEFEI- 98
           ++ F  PP   ++   L  L APHI SF+ ++ DEG       L + VEDI   + F+  
Sbjct: 30  ERQFRHPPVNASDVPALDELVAPHIKSFNALIEDEGNPGAKGLLQMGVEDIGEKVVFDGK 89

Query: 99  -----YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW 153
                 G  L   I + A+S+P VP         + +PTEAR+  + Y     V + W+ 
Sbjct: 90  GSEGGLGTKLSYRIDRVALSKPLVPEKDKLAVERRVFPTEARERLATYRSKLTVNIKWTV 149

Query: 154 DGKAGG----TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
             + G        KE G +P+M++S RC+L+ L   +LI+  E    +GGYFIV G+EK+
Sbjct: 150 TDEDGNRKEFEEIKECGLLPVMVRSIRCNLQGLPATELIKHSEESTSFGGYFIVNGNEKI 209

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
           +R L+  RR++PI + R ++  RG  ++  G  IR V+ DE+A  N +H+++NG A   F
Sbjct: 210 IRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPDETACTNTIHYLSNGGATLRF 269

Query: 270 SHRKSMCLL-------------------GMMQSLHEE-----------------GIHTQH 293
           + RK   ++                   G++Q  ++                  G+HT  
Sbjct: 270 AWRKVEYMIPLMLILKALVDASDKEIFEGLIQGEYDNTFLTDRVELLLRGQKSWGLHTGA 329

Query: 294 DSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVV 353
               + G+ F+  L       + V++  Y+L   +L HL    DKF  L  M  KL+  V
Sbjct: 330 QCLDYLGEKFRVVLNVP-DDWSNVQVGGYLLRKVVLVHLPAPRDKFRMLLFMLRKLYSQV 388

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAVLKESDI 397
            G    D+ DS    E++  G LY  ++K+                 + G +    +   
Sbjct: 389 SGATCPDNPDSPQHHEVLLPGFLYGMIIKERFDDCLNAVKSQIQLDLRDGKARSFMDPKY 448

Query: 398 YAAFRASS---IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV 454
           + +  + +   I S ++ FLATGN+ +   + L L Q SGF I+AE +N  RY+SHFR +
Sbjct: 449 FTSVLSKTNWDIGSKLSYFLATGNLVS--PTGLDLQQTSGFTIVAEKLNFYRYLSHFRCI 506

Query: 455 HRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
           HRG++F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  CQI     S  ++ I
Sbjct: 507 HRGAFFAELKTTTVRKLMPESWGFLCPVHTPDGSPCGLLNHLSHTCQI--VTSSLDVSHI 564

Query: 515 PSVLVSLGMLPLTPVIQSIPEQALMV--MLDGRIVGYILDQIATSLVPKLRMLKIVGE-K 571
           P++L + GM   T V  S  +   MV   LDG+++GY     A  L  +LR LK   + K
Sbjct: 565 PALLSAQGM---TQVFASSIDGRRMVCIQLDGKVIGYASPMKAKQLANRLRKLKTEADSK 621

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
           +P  LEI Y+  P    G YPGLYLF    RM+RPV  L  G ++ +G+FEQV+MD+ IT
Sbjct: 622 VPLDLEIGYV--PVTKGGQYPGLYLFASRSRMMRPVTYLENGKLDHLGSFEQVYMDVAIT 679

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            +E   G+++H EL  T  LS +AN+ P  D NQSPRNMYQCQMGKQ+MGTP      + 
Sbjct: 680 KEEIEKGVSSHVELDPTSMLSVIANMTPFSDFNQSPRNMYQCQMGKQSMGTPSTAISKRT 739

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             K+YRLQ+  +P  RP  ++    DNFP GTNAIVAVISYTGYDMEDAMILNKS++ERG
Sbjct: 740 DNKMYRLQSGQTPVVRPDLHNQYGFDNFPNGTNAIVAVISYTGYDMEDAMILNKSAHERG 799

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ--IFFGVVHYQRLRHMVSDKWQ 809
           F +G ++K+   +L+             GV G+   A+  + FG+               
Sbjct: 800 FGYGTVYKADIFDLK-------------GVPGASRSAKPTLHFGL--------------- 831

Query: 810 TKDYFGRD-PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC 868
                GRD   +    + +  DGL  +G ++   DP+ +Y  ++  R    +Y G E   
Sbjct: 832 -----GRDVKEDHDARNIISQDGLPIIGTRVKAGDPLCAYIDDTTGRTKFHKYKGDETAF 886

Query: 869 VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
           ++ VR+    ++ G       +I  RI R+P +GDKF+SR GQKG+CS K+PA D+PF++
Sbjct: 887 IDEVRVLG--SDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKFPAIDMPFSE 944

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           SG+ PD++ NPH FPSRMTIG  
Sbjct: 945 SGMQPDVIINPHAFPSRMTIGMF 967



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +GYNYYG E MYSG+ G    A I+ G+V+YQRLRHMV+DK+Q +     DP  +
Sbjct: 1007 AGYNYYGNEPMYSGITGEEFHADIYLGLVYYQRLRHMVNDKFQVRTTGPVDPLTR 1061


>gi|378731691|gb|EHY58150.1| DNA-directed RNA polymerase I subunit RPA2 [Exophiala dermatitidis
           NIH/UT8656]
          Length = 1219

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 354/998 (35%), Positives = 512/998 (51%), Gaps = 140/998 (14%)

Query: 52  KNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEGL------DLAVEDIAPIEFEIYGKTL 103
           K F   P  ++ F     A  PHI SF+ + DE L      D+ +  I   +     KT+
Sbjct: 23  KLFRNTPKDRSAFPALQAAVKPHIESFNALWDEKLLDAGLKDIGIYTIVDGDLRNPSKTI 82

Query: 104 KLNIVKAAISEPKV------PAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             N +   ++E  +      P+    I     YP E R+  + Y G   + + +  +   
Sbjct: 83  HRNKLDLRVTEVMLDKAVLPPSNKFSIQDRNIYPAECRERHATYRGKLRLRLQYRINNGD 142

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                ++VG++PIML+S RCHL   +PA+++   E  +E GGYFIV G+EKL+R+LI +R
Sbjct: 143 WKESVRDVGQMPIMLRSNRCHLEKFSPAEMVRHKEESEELGGYFIVNGNEKLIRMLIASR 202

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS--- 274
           RN+P+AI RNA+  RG  FS  G+ IRSV+ D+++  NVLH++T+G+  F FS RK+   
Sbjct: 203 RNYPMAIARNAFTARGPTFSKFGIQIRSVRPDQTSQTNVLHYLTDGNVTFRFSWRKNEYL 262

Query: 275 ----MCLLGMMQSLHEE---------------------------------GIHTQHDSKV 297
               M L  ++++   E                                  + T+  +  
Sbjct: 263 VPVVMILKALVETNDREIAEGIIGTASGSTTPSSFVSDRTELLLRTYKAYNLKTRAQTLA 322

Query: 298 FFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLF 350
           + G  F+  L   +   +E ++ +  L   +LPHL +         DKF  + +M  KL+
Sbjct: 323 YLGDKFRPVLGNPITMPDE-KVGEDFLRKIVLPHLGNVDVTPAQNNDKFQLILYMIRKLY 381

Query: 351 HVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAVLKE 394
            +  G   LD+ D++  QEI+ GG LY  +LK+                 +    A   +
Sbjct: 382 ALAAGDCTLDNPDAVSNQEILLGGFLYGMILKESIYDWLVSIGGAAREWIRMKNGATFAD 441

Query: 395 SDIYAAFRASSIESAMTN-------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
                 F    +     N       FL+TGN+ +   + L L Q SGF I+AE IN  R+
Sbjct: 442 PSFDTDFLPKVVRRTNENLAGRLEYFLSTGNLVS--QTGLDLSQTSGFTIVAEKINFYRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR +HRG++F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C +     
Sbjct: 500 ISHFRCIHRGTFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHQCMVQ---- 555

Query: 508 SKVLAQIPSVLV--SLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
              + +I +  V  ++    L+PV     + +L V LDGRI+GY   + A  +   LR  
Sbjct: 556 ---IKRIDTTGVEKAISQFGLSPVPAMDVKNSLSVQLDGRILGYCPVKRAQEISQLLRHW 612

Query: 566 KIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV 624
           K+ GE  IP  LEI ++  P    GLYPGLYLFT P RMLRPV  +A+  ++++G FEQ 
Sbjct: 613 KVNGEHGIPTELEIGFV--PTSNGGLYPGLYLFTDPSRMLRPVKYIASDKLDYVGPFEQQ 670

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
           +M+I     +  P +TTH E   T+ LS LAN+ P  D NQSPRNMYQCQM KQ MGTP 
Sbjct: 671 YMNIACVDADIIPNLTTHIEYKPTNILSILANMTPFSDFNQSPRNMYQCQMSKQAMGTPS 730

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
            N   +   K Y LQT  +P  RP  Y+   +DNFP G NA+VAVISYTGYDM+DAMI+N
Sbjct: 731 SNMMCRTDNKAYLLQTGQTPVVRPPLYNEYGLDNFPNGMNAVVAVISYTGYDMDDAMIIN 790

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           KS++ERGF  G I+K+   EL             S    S  + +  FG           
Sbjct: 791 KSAHERGFGDGVIYKTKVYELNEK----------SRSSRSKTEIKSLFGFAE-------- 832

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER-----------DPMYSYWKESE 853
                     G    ++ +   L PDGL  VG K++E            DP     K  +
Sbjct: 833 ----------GDPNISETVLQTLDPDGLPAVGTKVSEGSVVLAYHSVMFDPSEGKLKNLD 882

Query: 854 NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKG 913
                 +Y   EE  ++ +R+    TE G        I YRI R P +GDKF+SR GQKG
Sbjct: 883 GNTKYFKYKDAEEAYIDQIRLIG--TETGDQPCQAISIKYRIPRRPIIGDKFSSRHGQKG 940

Query: 914 ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +CS+ WP++D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 941 VCSMLWPSQDMPFSESGIQPDVIINPHAFPSRMTIGMF 978



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN+YG E +YSGV G    A I+ GVV+YQRLRHMVSDK+Q +
Sbjct: 1017 QAGYNFYGNEPLYSGVTGKEFAADIYIGVVYYQRLRHMVSDKFQVR 1062


>gi|67526951|ref|XP_661537.1| hypothetical protein AN3933.2 [Aspergillus nidulans FGSC A4]
 gi|40740052|gb|EAA59242.1| hypothetical protein AN3933.2 [Aspergillus nidulans FGSC A4]
 gi|259481492|tpe|CBF75062.1| TPA: DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           (AFU_orthologue; AFUA_6G08300) [Aspergillus nidulans
           FGSC A4]
          Length = 1231

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 351/1010 (34%), Positives = 523/1010 (51%), Gaps = 161/1010 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF--EIYGKT----- 102
           F  PP  +  +  L     PH+ SF+ + ++G  ++  ++DI    F  E+         
Sbjct: 23  FRNPPQDKTAYPSLAESIKPHVDSFNALFEKGGIIEAGLKDIGTRTFLDEVVETAEQKQQ 82

Query: 103 -------------LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPFNVT 148
                        L + I +  + +P +P        N+  YP+E R+  + Y G     
Sbjct: 83  RLAEGRRAPRRNKLHVRIKEVFLEKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAK 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G+VPIML++ RC+L   TPA+L++  E  +E GGYFIV G+EK
Sbjct: 143 IEYRVNNGDWTEQVRELGQVPIMLRTNRCYLEKATPAELVQHKEESEELGGYFIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+LI  RRN+P+AI RN + NRG  +S  G+ IRSV+ D+++  NVLH++ +G+  F 
Sbjct: 203 LIRMLIVGRRNYPMAIVRNTFTNRGHAYSKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFR 262

Query: 269 FSHRKSMCLL-------------------GMMQSLHEEGI-------------------- 289
           FS RK+  ++                   G++ S   EGI                    
Sbjct: 263 FSWRKNEYIIPVVMILKALVETNDREIFEGIVGSASSEGINNTFVTDRVELLLRTYKAYK 322

Query: 290 -HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            H++ + + F G+ FK  L       NE E     L   +LPHL +        +DKF  
Sbjct: 323 LHSRSECRAFIGEKFKPVLGVPADTPNE-EAGTEFLRKVVLPHLGNQNVTETQDYDKFKM 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------------ 383
           L  M  KL+ +V G    D+ D++  QEI+ GG LY  LLK+                  
Sbjct: 382 LMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLKERLDEWVRSFGPILRDWSN 441

Query: 384 ------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                       E+   S V++ S+        +I  AM  FL+TGN+ +   + L L Q
Sbjct: 442 RNHGARFTDPAFERDFVSKVIRRSN-------ENIGGAMEYFLSTGNLVS--PTGLDLQQ 492

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
            SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCG
Sbjct: 493 TSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCG 552

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           LLNHL   C ++       ++ +P +LV LG+   + V     ++++ V LDGRI+GY  
Sbjct: 553 LLNHLAHKCLVA--TSDTDVSHLPKLLVQLGVRNESSVSL---DESVTVQLDGRIIGYCS 607

Query: 552 DQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
            + A  +   LR  K+ G   +P  LEI Y+  P    G YPG+Y+F+   RM RPV  L
Sbjct: 608 PKQARVIASTLRHWKVSGTNNVPLGLEIGYV--PNSNGGQYPGIYMFSQAARMYRPVKYL 665

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
               ++++G FEQ FM+I     +   G++TH E + T+ LS +AN+ P  D NQSPRNM
Sbjct: 666 PLDKLDYVGPFEQPFMEIACLPSDLVKGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNM 725

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQCQM KQTMGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+I
Sbjct: 726 YQCQMSKQTMGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAII 785

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           SYTGYDM+DAMI+NKSS+ERGF +G ++K+    L+            S    S    Q 
Sbjct: 786 SYTGYDMDDAMIINKSSHERGFGYGTVYKTKVHSLDE---------KDSRRTKSKQAVQK 836

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY-- 848
            FG      +R     +W+                 L  DG  ++GA++ E   + +Y  
Sbjct: 837 LFGFAPGSEIRA----EWRAT---------------LDEDGFPHIGAEIKEGSIVAAYHT 877

Query: 849 --WKESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
             +  + + Y+         +Y   E   ++ +R+    +E G+       + YRI R P
Sbjct: 878 VRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMG--SETGTEPAQAISVKYRIPRKP 935

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +GDKF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 936 IIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 76/171 (44%), Gaps = 16/171 (9%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYG E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +      P N      
Sbjct: 1027 AGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVRT---TGPVNNLTGQP 1083

Query: 827  L---GPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
            +      G + VG    ERD + ++      ++R + C  S +  +C    R    F   
Sbjct: 1084 VKGRAKGGGIRVGEM--ERDSLIAHGAAYILQDRLMNCSDSQRAWIC----RDCGSFLST 1137

Query: 882  GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
                 +      R+    + G   A+  G  GI   +  A +  F DS  V
Sbjct: 1138 QVAVSSAGSSKARMAAKNSSGS--AALGGNAGIVRCRRCAREAVFDDSRAV 1186


>gi|403215483|emb|CCK69982.1| hypothetical protein KNAG_0D02320 [Kazachstania naganishii CBS
           8797]
          Length = 1202

 Score =  580 bits (1494), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 363/989 (36%), Positives = 522/989 (52%), Gaps = 136/989 (13%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDI------------ 91
           +  F  PP  +  + L   A  PH+ SF+  L EG     L+  V+DI            
Sbjct: 22  ESRFINPPKDKTAYPLLKEAVEPHVGSFN-ALTEGPNGGLLNAGVKDIHEKVIFDGKVAT 80

Query: 92  --APIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTV 149
               +     G  L +++ + +IS+P    G       K +PTEARQ  + Y G   + +
Sbjct: 81  DEDAVNDGYLGNKLAISVEQVSISKPTSNDGVSSAVERKVFPTEARQRLTSYKGKLLLKL 140

Query: 150 AWSWD-GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
            WS + G+   +  ++ G +P+ML+S RCHL  L+P  L+++ E  DE GGYFIV G EK
Sbjct: 141 KWSVNNGEDEFSEVRDCGGLPVMLQSNRCHLNKLSPYDLVQQKEESDEVGGYFIVNGIEK 200

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+LI  RRNHP+AI R ++ NRG  +S  G+ IR+V+ D+++  NVLH++ +G   F 
Sbjct: 201 LIRMLIVQRRNHPMAIIRPSFTNRGASYSAFGIQIRAVRPDQTSQTNVLHYLNDGQVTFR 260

Query: 269 FSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRHL------ 314
           FS RK+  L+  +  L  + +    D ++F G +          ++L+  LR        
Sbjct: 261 FSWRKNEYLIPAVMIL--KALCDTSDREIFDGIVGSDLSNSFLTDRLELLLRGFKKRYPT 318

Query: 315 --NEVEICDYM-----------------------LTNCILPHLDD--YWDKFLCLSHMTC 347
             N  ++  Y+                       L   +L HL +    DK   L  M  
Sbjct: 319 LQNRTQVLQYLGDKFRFVFQASADKTDYEVGQEVLNRIVLVHLGNGNNEDKSKLLLFMIR 378

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAV 391
           KL+ +V G    D+ D+   QE++ GG LY  ++K++                  G +  
Sbjct: 379 KLYSLVAGECSPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNIISQIRADINRGMAIN 438

Query: 392 LKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
            K+    +        +I S +  FL+TGN+ +   S L L Q SG+ ++AE IN  R++
Sbjct: 439 FKDRKYMSRVLMRVNENIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFI 496

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
           SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C IS     
Sbjct: 497 SHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCSIS--TTQ 554

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
             + ++PS+L SLG+   +    + P     V LDGRI+G+        +   LR LK+ 
Sbjct: 555 SDVTKVPSLLYSLGVSSASHTFAAGPS-LCCVQLDGRIIGWTSHAQGKIIADTLRFLKVE 613

Query: 569 G--EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
           G  + +P  LEI Y+  P    G YPGLYLF G  RM+RPV  L     + +G FEQV+M
Sbjct: 614 GKTDGLPLDLEIGYV--PPSTKGQYPGLYLFAGHSRMMRPVRYLPLDKEDIVGPFEQVYM 671

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
           +I +T +E    I +H E + T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP + 
Sbjct: 672 NIAVTQQEIQNNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVA 731

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
             ++   KLYRLQ+  +P  +   YD   MDNFP GTNA+VAVISYTGYDM+DAMI+NKS
Sbjct: 732 LCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKS 791

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           + ERGF +G ++K   I+L    N            G  +     FG           SD
Sbjct: 792 ADERGFGYGTMYKVEKIDLSLNRNR-----------GDPVSQHFGFG-----------SD 829

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEE 866
            W            K   +KL  DGL ++G  + E DP+ +Y+ +  N+     Y   E 
Sbjct: 830 DWP-----------KEWLNKLDDDGLPHIGTYVEEGDPICAYFDDVVNKTKIKTYHSSEP 878

Query: 867 MCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
             +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQKG+CS KWP  
Sbjct: 879 GYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTV 933

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 934 DMPFSETGIQPDVIINPHAFPSRMTIGMF 962



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG  G  ++  I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1001 KAGYNYHGNEPMYSGATGEELRVDIYVGVVYYQRLRHMVNDKFQVR 1046


>gi|367052829|ref|XP_003656793.1| hypothetical protein THITE_2121926 [Thielavia terrestris NRRL 8126]
 gi|347004058|gb|AEO70457.1| hypothetical protein THITE_2121926 [Thielavia terrestris NRRL 8126]
          Length = 1236

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 364/999 (36%), Positives = 529/999 (52%), Gaps = 146/999 (14%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFDFML-DEG----LDLAVEDIAPIEF-------EIY 99
           F  PP  +  +  L L   PHI SF+ +  ++G    LD A+ +I    F          
Sbjct: 24  FRNPPTDRTAYPALQLAVDPHIESFNALFRNDGKTSLLDHALAEIGTKTFLDGDDRAAPA 83

Query: 100 GKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
           GK  L +      +   +VP         + +P E R+    Y G       +  +    
Sbjct: 84  GKNKLTIRYKSVTLQRSQVPPTNKFAKRREIFPAECRERHVTYRGKLTAVFEYRINDGEP 143

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             F++E+G++PIM+KS +CHL N  PA L++R E  +E GGYFIV G EK++RLL+ N+R
Sbjct: 144 MEFSRELGQMPIMVKSNKCHLENNPPALLVQRKEESEELGGYFIVNGIEKIIRLLLVNKR 203

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS---- 274
           N P+AI R ++ NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+    
Sbjct: 204 NFPLAITRPSFTNRGPSYTPYGIIVRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLV 263

Query: 275 ---MCLLGMMQSLHEE---------------------------------GIHTQHDSKVF 298
              M L  ++++   E                                 G++T+  ++ +
Sbjct: 264 PVMMILKALVETNDREIFEGLVGPPNSKGIENTFLTDRVELLLRTYKTYGLYTKTQTRAY 323

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTCKLFH 351
            G+ F+  L      +++ E+    L   +L HL       +   DKF  L  M  KL+ 
Sbjct: 324 LGEKFRVVLGVP-DTMSDYEVGTEFLRKIVLVHLGCVDVTEEQDLDKFKMLLFMCRKLYA 382

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------------KSGTS 389
           +V G   +D+ D++  QEI+ GG LY  +LK++                       S TS
Sbjct: 383 LVAGDCAIDNPDAVQNQEILLGGFLYGMILKEKLDEFLSVSVRGALRDYLRNHATVSFTS 442

Query: 390 AVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
              +     A FR ++  I +A+  FL+TGN+ +   S L L Q SGF ++AE +N +R+
Sbjct: 443 PTFQRDFPVAIFRKANENIGNALEYFLSTGNLQS--PSGLDLQQTSGFTVVAEKLNFLRF 500

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I     
Sbjct: 501 ISHFRMVHRGSFFAQLKTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLAHKCKI--MTD 558

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
           S  ++ +P V + LG+   +    S   ++++VMLDGRI+G+   + A  +   LR  K+
Sbjct: 559 SLDVSAVPGVAMELGVNDYSSAATS---ESVVVMLDGRIIGWCTPRAAKGVADSLRRWKV 615

Query: 568 VG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
            G   IP  LEI Y+  P +G G YPG+Y+ + P RM+RPV  LA G  +++G  EQ +M
Sbjct: 616 EGGHGIPVQLEIGYVP-PSRG-GSYPGIYMSSRPARMVRPVKYLALGKEDFVGPHEQPYM 673

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
            I  T  E  PG +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP   
Sbjct: 674 SIACTEAEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTA 733

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
            RY+   K YRLQT  +P  R   ++T   DNFP GTNA+VAVISYTGYDM+DAMI+NKS
Sbjct: 734 LRYRTDNKTYRLQTGQTPIVRSPLHNTYGFDNFPNGTNAVVAVISYTGYDMDDAMIINKS 793

Query: 747 SYERGFAHGCIFKSMFIELES----GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           ++ERGF HG I+K+  I L+       +      M+    GS ++A              
Sbjct: 794 AHERGFGHGTIYKTKKISLKDDDTRARSSKAIVKMFGFAPGSAVRA-------------- 839

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE-------NR 855
             SD+                 + L  DGL YVG  + + D +Y++   S        NR
Sbjct: 840 --SDR-----------------EMLDEDGLPYVGRLVRQGDILYAWHTVSADYSGQLINR 880

Query: 856 YVTC---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
                  RY   E+  VE VR+    ++ G+       I  R+ R+P +GDKF+SR GQK
Sbjct: 881 DGITHWERYKDSEDAFVEEVRVIG--SDTGNEPLQTVSIKLRVPRSPVIGDKFSSRHGQK 938

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G+CS KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 939 GVCSQKWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMF 977



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++G+NY+G E MYSG+ G      I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1015 MKAGFNYHGNEPMYSGITGEEFACDIYIGVVYYQRLRHMVNDKYQVR 1061


>gi|326432519|gb|EGD78089.1| RNA polymerase [Salpingoeca sp. ATCC 50818]
          Length = 1130

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 358/976 (36%), Positives = 518/976 (53%), Gaps = 115/976 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           + AP  + +T     K  +K    L  +   H+ SF+  +   L LAVED+ P+ F++  
Sbjct: 1   MEAPFERIITPAERLKMKEKMQIDLRDITRAHVESFNEFISHNLPLAVEDLEPVMFDVND 60

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
           +T+   IV  +I  P + +  V    +   P E RQ    Y G   + +  + +G    T
Sbjct: 61  QTVTTRIVGCSIGAPSLNSRVVSAQTD-ITPAECRQCHVSYKGNITLEIEINVNGHVT-T 118

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
             + VG+ PIM+ S +C L  LT AQ I + E   E+GGYFI+ G+EK++R+L+  RRNH
Sbjct: 119 VPRYVGQAPIMVMSDKCILSKLTTAQKIAKQEEAREFGGYFIINGNEKVIRMLMMARRNH 178

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK------S 274
           P+A+ R ++ NRG  +++ GV IR V+ DE++   VLH +  G     FS RK      +
Sbjct: 179 PMALIRPSFMNRGFKYTEYGVQIRCVRPDETSQRLVLHLIEGGRCTLGFSIRKRQYLIPA 238

Query: 275 MCLLGMMQSLHEEGIH-----------------------------TQHDSKVFFGQIFKE 305
           + LL  ++ + E  I+                             +QH S  + G +F+ 
Sbjct: 239 ILLLRALKDVTERDIYEAIVESDPTDSTLKEHVKAMLNAAPDNTYSQHTSLEYLGAMFRI 298

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
           +L      ++ +E   ++L   I  H+   DY  K+  L  M  +L+ +  G V+ D+ D
Sbjct: 299 ELGMH-PSISNIEAARHLLKQYIFVHIPQHDYTAKYDLLIAMIRRLYALKSGRVRADNPD 357

Query: 364 SIMLQEIMTGGSLYLQLLKKEKSGTSAVLK-----------ESDI--YAAFRAS------ 404
           S M QE++  G +Y  LLK++       +K           E D+   + FR        
Sbjct: 358 SPMNQEVLQAGQIYGALLKEQMQEYLLAMKRFITMQVNMGREVDVGDQSYFRNRVFPTMP 417

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            I  A+  FLATGN+ +   + L  MQA+GF I+A+ +N +RYMSHFR VHRG+YF EM+
Sbjct: 418 DIGKALDYFLATGNLKS--TTGLDQMQAAGFAIVADKLNILRYMSHFRCVHRGAYFAEMK 475

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGM 523
           ++  R+L  +AWGFICPVHTPDG PCGLLNHLT +C   S+ +   V+ Q+  V+ SLG+
Sbjct: 476 TTAVRKLLPEAWGFICPVHTPDGAPCGLLNHLTRHCTPQSKAVSPAVIKQLRQVVHSLGV 535

Query: 524 LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLK 582
             +   +  I    L V LDG +VG    +   ++  KLR  K++G   +P+ LEI ++ 
Sbjct: 536 QEVG--MHRIEPPVLDVFLDGVVVGVANVKTIEAVALKLREYKVLGLHNVPEVLEIAFIP 593

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYP----- 637
            P +G G+YPGLYLFT P RMLRPV++L     E I + EQV++DI + + E +      
Sbjct: 594 -PAEG-GVYPGLYLFTTPTRMLRPVLHLGTNKRELISSLEQVYLDIGVDIAECHRNHEKF 651

Query: 638 GIT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
           GI  TH E+SK   LS +++  P  D NQSPRNMYQCQMGKQTMG P     Y+   KLY
Sbjct: 652 GINYTHMEISKHGMLSVVSSFTPFSDFNQSPRNMYQCQMGKQTMGIPSQAIPYRADNKLY 711

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
            L +  +P   P  Y+  ++D++P+G NA+V VI+YTGYDMEDAMI+NK S +RGF H  
Sbjct: 712 VLNSGQTPVVHPRAYNEYNLDDYPLGNNAVVCVIAYTGYDMEDAMIINKGSIDRGFMHAR 771

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           + K+  ++L                                        D+      FG 
Sbjct: 772 VLKTEIVDL---------------------------------------VDRSGVSKAFGL 792

Query: 817 DPANKAL-EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
            P ++A   D L  DGL  VG  + + DP Y+   E ++ ++  RY G E   +E VR+ 
Sbjct: 793 LPRHRAENSDFLDDDGLPRVGIMVEKGDPFYAVVDEEQSNHIH-RYKG-EPARIESVRLL 850

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
                          I   + RNP +GDKFASR GQKGI S   P+ED+PFT+SG+ PDI
Sbjct: 851 LASDTSTKREVQRIAITVSVNRNPIIGDKFASRHGQKGILSQMLPSEDMPFTESGITPDI 910

Query: 936 VFNPHGFPSRMTIGFL 951
           +FNPHGFPSRMTIG L
Sbjct: 911 IFNPHGFPSRMTIGML 926



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG+ G  ++  +F G V YQRLRHMVSDK+Q +
Sbjct: 965  KAGYNYFGHERMYSGITGEELEVDVFIGNVFYQRLRHMVSDKYQVR 1010


>gi|330819047|ref|XP_003291577.1| RNA polymerase I, second largest subunit [Dictyostelium purpureum]
 gi|325078245|gb|EGC31907.1| RNA polymerase I, second largest subunit [Dictyostelium purpureum]
          Length = 1117

 Score =  577 bits (1487), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 350/957 (36%), Positives = 514/957 (53%), Gaps = 109/957 (11%)

Query: 62  NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGP 121
           +E L +L  PHI SFDF  D G+DL ++   P+ FE   +  K+   +  + +P      
Sbjct: 2   SEELKSLIQPHIDSFDFFTDHGIDLILKSNEPLYFEHKERQYKIKFTQLKLGKPVHNFKE 61

Query: 122 VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK---EVGRVPIMLKSKRCH 178
             + F   YP EAR+    Y  PF   V+      +     K   ++GR+PIM+KS+ CH
Sbjct: 62  KEVRF---YPNEAREAGVTYDAPFKGEVSLYEGVDSDEPIHKVDVDLGRMPIMVKSRFCH 118

Query: 179 LRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD 238
           L  L+  +LIE+ E   E GGYFIV G+EK+VR+L+  + NHP+A+ R AW NRG  ++ 
Sbjct: 119 LNGLSSEELIEKREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAWTNRGPGYTK 178

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK------SMCLLGMMQ---------- 282
            G+ IR V+ D ++  N LH++++G     F +R+      +  LL  ++          
Sbjct: 179 FGITIRCVRPDRTSITNNLHYISDGQITLRFLYRRQEFFLPATLLLKALKDTTEREIYEN 238

Query: 283 -----------------SLHEE---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY 322
                            SL E+    I+TQ +   + G  F+ + Q      N  +I  +
Sbjct: 239 LVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRARSQLPSSFSN-TQIGQW 297

Query: 323 MLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
            + + +  HL +Y DK+  L  M  KL+ +V G    D+ DS    E++  G ++  +L 
Sbjct: 298 FIDSYVFVHLPNYKDKYNLLVLMIQKLYSMVAGKSGTDNIDSAAFHEVLLAGQIFGSILG 357

Query: 383 KE-----KSGTSAVL-------KESDIYAAFRASSIE------SAMTNFLATGNVSAGKN 424
           ++     +S  S  L       KE+D        ++E           FLATGN+ +  N
Sbjct: 358 EKLTEYLESTRSFTLKHFEDKKKENDKLENVFKKTVEKNFKIGDRFNYFLATGNLRS--N 415

Query: 425 STLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
           S L L Q SGFV++A+ +N +R++SHFR++HRG++F  M+++  R+L  ++WGF+CPVHT
Sbjct: 416 SGLDLQQTSGFVVIADKLNFLRFISHFRSIHRGAFFATMKTTSIRKLMPESWGFLCPVHT 475

Query: 485 PDGTPCGLLNHLTTNC--QISEYIPSKVLAQ---IPSVLVSLGMLPLTPVIQSIPEQALM 539
           PDG PCGLLNHLT+ C   +      KVL     IPS L + GMLP+  +      Q L 
Sbjct: 476 PDGAPCGLLNHLTSACLVTVDPLQDQKVLKARPLIPSFLATHGMLPID-MTTVFSHQYLT 534

Query: 540 VMLDGRIVGYILDQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLF 597
           + LDG ++G I  +    LV  LR L+ VG +  IPK++EI Y          YPG+ LF
Sbjct: 535 ITLDGCVIGKIEQKAGEELVTMLRYLRSVGTEPAIPKTIEISYSPPSSVENSQYPGISLF 594

Query: 598 TGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANL 657
           T   R +RPV+NL +G  E IG  EQ++M+I +   E   G+TTH E S T   S LANL
Sbjct: 595 TSGARFMRPVINLTSGKEELIGPQEQLYMEIAVVPNEVIKGVTTHIETSPTAMFSLLANL 654

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
            P  D NQSPRNMYQCQM KQTMGTP  ++ ++   KLY++Q    P     +     ++
Sbjct: 655 TPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKIQNIQKPIVHTKNQFKYRVN 714

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
           ++  G NA++AVIS TGYDMEDAMI+NKS+YERGF HG ++K+ +I+L+ G + + ++  
Sbjct: 715 DYAHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDEGLSRFESK-- 772

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANKALEDKLGPDGLVYVG 836
                                            K +FGR + +   L D +  DGL +VG
Sbjct: 773 ---------------------------------KTFFGRPNSSVDNLGDFIDVDGLPFVG 799

Query: 837 AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM--SSGFTEGGSVTPNCAYIGYR 894
             +   +P Y+Y + S+ + V   Y GKEE  +E VR+  +SG T       N   +  R
Sbjct: 800 RLIKPGEPYYTYIRPSDGKQVVKDYKGKEEAYIEEVRILFASGGTGREPSKINNICVKLR 859

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             RNP +GDKF+SR GQKG+ S  WP  ++PFT+SG+ PD++ NP+ FPSRMTIG L
Sbjct: 860 YNRNPVIGDKFSSRHGQKGVLSQLWPEVNMPFTESGMKPDVIINPNAFPSRMTIGML 916



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +SG+N +G ETMYSG  G   +A+IFFGV +YQRLRHMV DK+Q +
Sbjct: 955  KSGFNRFGNETMYSGTTGKEFEAEIFFGVCYYQRLRHMVKDKYQVR 1000


>gi|336465559|gb|EGO53799.1| DNA-directed RNA polymerase I subunit RPA2 [Neurospora tetrasperma
           FGSC 2508]
 gi|350295141|gb|EGZ76118.1| DNA-directed RNA polymerase I subunit RPA2 [Neurospora tetrasperma
           FGSC 2509]
          Length = 1234

 Score =  577 bits (1486), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 362/999 (36%), Positives = 533/999 (53%), Gaps = 141/999 (14%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFML-DEG----LDLAVEDIAPIEF------- 96
           +K F  PP  +  +     A  PHI SF+ +  D+G    LD A+ +I    F       
Sbjct: 23  EKLFRDPPTDRTAYPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERA 82

Query: 97  EIYGKTLKLNIVKAAIS--EPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
           +  GK  KL I   +I   + +VP         + +P E R+    Y G  + T  +  +
Sbjct: 83  DPQGKN-KLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRIN 141

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                 F +E+G++PIM+KS +CHL+N +PAQL+ R E  +E GGYFIV G EKL+R+L+
Sbjct: 142 DGEPHEFVRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLL 201

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS 274
            NRRN P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++++G+  F FS RK+
Sbjct: 202 LNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKN 261

Query: 275 MCLLGMM----------------------------------------QSLHEEGIHTQHD 294
             L+ +M                                        ++  + G++++  
Sbjct: 262 EYLIPVMMIMKALVETNDREIFEGLVGPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQ 321

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTC 347
           ++ + GQ F+  L      +++ E+    L   +L HL           DKF  L  M  
Sbjct: 322 TRAYLGQKFRVVLGVP-DTMSDYEVGTEFLRKIVLVHLGCQDVTEQQDADKFNMLLFMCR 380

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVLK----- 393
           KL+ +V G   +D+ D++  QEI+ GG LY Q++K+          ++     L+     
Sbjct: 381 KLYALVAGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTV 440

Query: 394 --ESDIY------AAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
             +SD +      A FR ++  I  ++  FL+TGN+ +   S L L Q SGF ++AE +N
Sbjct: 441 SFQSDTFLKDFPIAIFRRANENIGQSLEYFLSTGNLVS--PSGLDLQQVSGFTVVAEKLN 498

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            +R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I 
Sbjct: 499 FLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKI- 557

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
               S   + IP +   LG++ ++    S   ++++VMLDGRIVG+   +   S+   LR
Sbjct: 558 -MTESVDASTIPRLAFELGVVNISSAATS---ESVVVMLDGRIVGWCTPEECKSIAETLR 613

Query: 564 MLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFE 622
             K+ GE  +P  LEI Y+  P    G YPGLY+ + P RM+RPV  L     +++G  E
Sbjct: 614 YWKVNGENGVPLQLEIGYV--PPSNGGSYPGLYMSSQPARMVRPVKYLPLQKEDFVGPQE 671

Query: 623 QVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
           Q +M I  T +E  PG +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGT
Sbjct: 672 QPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGT 731

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
           P     ++   K+YRLQT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMI
Sbjct: 732 PATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMI 791

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           LNKS++ERGF HG I+K+  + L+        +++              FG      +R 
Sbjct: 792 LNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVK-----------MFGFAPNSTIR- 839

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE-------NR 855
                             ++  D L  DGL  VG  L E D + ++   S        NR
Sbjct: 840 ------------------ESTRDMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVNR 881

Query: 856 YVTC---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
                  RY   E+  VE VR+     + G+       I  RI R+P +GDKF+SR GQK
Sbjct: 882 DGVTHYERYKDSEDAFVEEVRVIGA--DNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQK 939

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G+ S KWPA D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 940 GVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMF 978



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GYNY+G E +YSG+ G   QA I+ GVV+YQRLRHMV+DK+Q +      P      
Sbjct: 1016 MKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPI 1075

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                  G + VG    ERD + ++      ++R + C    K  MC
Sbjct: 1076 KGRKKGGGIRVGEM--ERDALLAHGTSFLLQDRLLNCSDYSKSWMC 1119


>gi|85115172|ref|XP_964824.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Neurospora
           crassa OR74A]
 gi|51704242|sp|O74633.2|RPA2_NEUCR RecName: Full=DNA-directed RNA polymerase I subunit RPA2; AltName:
           Full=DNA-directed RNA polymerase I polypeptide 2;
           Short=RNA polymerase I subunit 2
 gi|28926619|gb|EAA35588.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Neurospora
           crassa OR74A]
          Length = 1234

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/1000 (36%), Positives = 536/1000 (53%), Gaps = 143/1000 (14%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFML-DEG----LDLAVEDIAPIEF------- 96
           +K F  PP  +  +     A  PHI SF+ +  D+G    LD A+ +I    F       
Sbjct: 23  EKLFRDPPTDRTAYPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERA 82

Query: 97  EIYGKTLKLNIVKAAIS--EPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
           +  GK  KL I   +I   + +VP         + +P E R+    Y G  + T  +  +
Sbjct: 83  DPQGKN-KLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRIN 141

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                 F +E+G++PIM+KS +CHL+N +PAQL+ R E  +E GGYFIV G EKL+R+L+
Sbjct: 142 DGEPHEFVRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLL 201

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS 274
            NRRN P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++++G+  F FS RK+
Sbjct: 202 VNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKN 261

Query: 275 MCLLGMM----------------------------------------QSLHEEGIHTQHD 294
             L+ +M                                        ++  + G++++  
Sbjct: 262 EYLIPVMMIMKALVETNDREIFEGLVGPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQ 321

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTC 347
           ++ + GQ F+  L      +++ E+    L   +L HL           DKF  L  M  
Sbjct: 322 TRAYLGQKFRVVLGVP-DTMSDYEVGTEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCR 380

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVLK----- 393
           KL+ +V G   +D+ D++  QEI+ GG LY Q++K+          ++     L+     
Sbjct: 381 KLYALVAGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTV 440

Query: 394 --ESDIY------AAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
             +SD +      A FR ++  I  ++  FL+TGN+ +   S L L Q SGF ++AE +N
Sbjct: 441 SFQSDTFLKDFPIAIFRRANENIGQSLEYFLSTGNLVS--PSGLDLQQVSGFTVVAEKLN 498

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
            +R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I 
Sbjct: 499 FLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIM 558

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +E + +  ++++      LG++ ++    S   ++++VMLDGRIVG+   +   S+   L
Sbjct: 559 TESVDASTISRLA---FELGVVNISSAATS---ESVVVMLDGRIVGWCTPEECKSIAETL 612

Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
           R  K+ GE  +P  LEI Y+  P    G YPGLY+ + P RM+RPV  L     +++G  
Sbjct: 613 RYWKVNGENGVPLQLEIGYV--PPSNGGSYPGLYMSSQPARMVRPVKYLPLQKEDFVGPQ 670

Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
           EQ +M I  T +E  PG +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMG
Sbjct: 671 EQPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMG 730

Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
           TP     ++   K+YRLQT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAM
Sbjct: 731 TPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAM 790

Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           ILNKS++ERGF HG I+K+  + L+        +++              FG      +R
Sbjct: 791 ILNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVK-----------MFGFAPNSTIR 839

Query: 802 HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE-------N 854
                              ++  D L  DGL  VG  L E D + ++   S        N
Sbjct: 840 -------------------ESTRDMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVN 880

Query: 855 RYVTC---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
           R       RY   E+  VE VR+     + G+       I  RI R+P +GDKF+SR GQ
Sbjct: 881 RDGVTHYERYKDSEDAFVEEVRVIGA--DNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQ 938

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG+ S KWPA D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 939 KGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMF 978



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GYNY+G E +YSG+ G   QA I+ GVV+YQRLRHMV+DK+Q +      P      
Sbjct: 1016 MKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPI 1075

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                  G + VG    ERD + ++      ++R + C    K  MC
Sbjct: 1076 KGRKKGGGIRVGEM--ERDALLAHGTSFLLQDRLLNCSDYSKSWMC 1119


>gi|219111265|ref|XP_002177384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411919|gb|EEC51847.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1147

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 365/974 (37%), Positives = 511/974 (52%), Gaps = 129/974 (13%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG-KTLKLNIVKAAISEPKVPAGPVG 123
           L TL APH+ SFD+  ++GL   V+DI P EF I   + L+ N +         PA   G
Sbjct: 3   LRTLTAPHVDSFDYFWEQGLARGVQDIEPAEFNIVDPQKLRDNPIAK-------PAKAPG 55

Query: 124 IHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT--------FTKEVGRVPIMLKSK 175
               K  P E R+ + VY+G  + T  +    +  G           K  G +PIM+ SK
Sbjct: 56  ERSQKLLPRECRERKLVYAGEISATFCYRMIQRRNGVDFPSRPVRLNKTFGDMPIMVMSK 115

Query: 176 RCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL 235
            CHL   TP QL++  E  +E+GGYFIVGG E+ VRLL   RRNH  AI+R+++KNRG  
Sbjct: 116 GCHLEGTTPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRRNHATAIQRSSYKNRGNT 175

Query: 236 FSDLGVYIRSVKR--DESATNNVLHFVTNGSARFMFSHRKSMCLLGMM------------ 281
           ++DLGV +R  +   D SA  N +H++T G A   F  +K   L+  +            
Sbjct: 176 YTDLGVAMRCARHNGDMSAITNTVHYLTTGGANLKFVAKKQEFLIPAILILRALSGSESQ 235

Query: 282 QSLHEE---------------------------GIHTQHDSKVFFGQIFKEKLQYDLRHL 314
             L+E                             ++T  +   F G  F+ +L       
Sbjct: 236 TELYERIVQGDQSNTFLVARAGLLLQDARARFGSLNTPDECLAFIGTRFR-RLSQKAETT 294

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
           ++VEI  +++   +L HL  Y DK  CL  M  KL+    G   +D+ DS+  QEI+  G
Sbjct: 295 SDVEIGHHIIRRFVLIHLPTYRDKLECLLLMLRKLYAFAAGDCGVDNADSLQNQEILLPG 354

Query: 375 SLYLQLLK-------------------KEKSGTSAVLKES-------DIYAAFRASSIES 408
            L    +K                   K+ + TSA L ++       D +A   +  I  
Sbjct: 355 HLMCTFIKEKFEEFLSSLRLALLSDLRKDFARTSAKLTDAKYWGKMVDRHAGKASGGIGK 414

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
            + +FL+TGN+ +   S L LMQ SG+ I+AE +N +RY +HFR+VHRG +F EM+++  
Sbjct: 415 KVQHFLSTGNIVS--TSGLDLMQVSGYTIVAERLNFLRYCAHFRSVHRGQFFMEMKTTAV 472

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ----IPSVLVSLGML 524
           R+L  D WGF+CPVHTPDG PCGLL+HL    ++  Y PS++ A+    +  +L+SLG+ 
Sbjct: 473 RKLLPDQWGFLCPVHTPDGGPCGLLSHLALKSKVMAY-PSRLDAKGMIDLDDLLLSLGVT 531

Query: 525 PLTPVIQSIPEQA------LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI-PKSLE 577
           P     ++   +       L V +DGRIVG     +   +   LR LK+    + P +LE
Sbjct: 532 PCGAGSRNGDGRIGSTHLHLPVSIDGRIVGGASPSVLKIIAAHLRKLKVDNPPVVPPTLE 591

Query: 578 IVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYP 637
            V L  P      YPGLYLFT   R++RPV+N A+G+ E+IG  EQ +MDI    ++   
Sbjct: 592 -VGLVPPGNPGAPYPGLYLFTCAARLVRPVLNRASGHTEFIGPLEQGYMDIACLDEDIRE 650

Query: 638 GITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
           GITTH+EL  T+ LS +ANL P  D NQSPRNMYQCQMGKQTMGTP  +  Y+   KLYR
Sbjct: 651 GITTHQELDPTNMLSLIANLTPFSDQNQSPRNMYQCQMGKQTMGTPAHSLPYRPDNKLYR 710

Query: 698 LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
           LQTP +P  +   +    MD +P GTNA+VAV+SYTG+DMED++ILNKSS ERGFAH  +
Sbjct: 711 LQTPQAPVVQTSIHGEYKMDEYPNGTNAVVAVLSYTGFDMEDSVILNKSSVERGFAHASV 770

Query: 758 FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +K++ + L+      G  +  SG D  M                     K+  K  F   
Sbjct: 771 YKTIDVSLQEEAKMTGASS--SGEDVRM---------------------KFSNKVKF--- 804

Query: 818 PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
             +K +   L  DGL  VG  + E DP+Y             ++  +E   V+ VR    
Sbjct: 805 --DKVMYPSLQDDGLPQVGDCMTEGDPLYCVVDSISGMDRAAKHKEREIAYVQSVRALG- 861

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             + G    N   I  R  RNP +GDKF+SR GQKG+ S+ WP ED+PF++SG+ PD++ 
Sbjct: 862 -NDSGKGADNKVSITLRFPRNPVLGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVII 920

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG +
Sbjct: 921 NPHAFPSRMTIGMM 934



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 38/45 (84%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNYYG+E +YSGV G +MQA ++ GVV+YQRLRHMV DK+Q +
Sbjct: 976  AGYNYYGSEPLYSGVSGCVMQADLYIGVVYYQRLRHMVLDKYQVR 1020


>gi|3668171|dbj|BAA33445.1| RNA polymerase I second-largest subunit [Neurospora crassa]
          Length = 1234

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 360/1000 (36%), Positives = 536/1000 (53%), Gaps = 143/1000 (14%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFML-DEG----LDLAVEDIAPIEF------- 96
           +K F  PP  +  +     A  PHI SF+ +  D+G    LD A+ +I    F       
Sbjct: 23  EKLFRDPPTDRTAYPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERA 82

Query: 97  EIYGKTLKLNIVKAAIS--EPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
           +  GK  KL I   +I   + +VP         + +P E R+    Y G  + T  +  +
Sbjct: 83  DPQGKN-KLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRIN 141

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                 F +E+G++PIM+KS +CHL+N +PAQL+ R E  +E GGYFIV G EKL+R+L+
Sbjct: 142 DGEPHEFVRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLL 201

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS 274
            NRRN P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++++G+  F FS RK+
Sbjct: 202 VNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKN 261

Query: 275 MCLLGMM----------------------------------------QSLHEEGIHTQHD 294
             L+ +M                                        ++  + G++++  
Sbjct: 262 EYLIPVMMIMKALVETNDREIFEGLVGPPQSKASPTPSLTDRVELLLRTYKKYGLYSKTQ 321

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTC 347
           ++ + GQ F+  L      +++ E+    L   +L HL           DKF  L  M  
Sbjct: 322 TRAYLGQKFRVVLGVP-DTMSDYEVGTEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCR 380

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVLK----- 393
           KL+ +V G   +D+ D++  QEI+ GG LY Q++K+          ++     L+     
Sbjct: 381 KLYALVAGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTV 440

Query: 394 --ESDIY------AAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
             +SD +      A FR ++  I  ++  FL+TGN+ +   S L L Q SGF ++AE +N
Sbjct: 441 SFQSDTFLKDFPIAIFRRANENIGQSLEYFLSTGNLVS--PSGLDLQQVSGFTVVAEKLN 498

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
            +R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I 
Sbjct: 499 FLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIM 558

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +E + +  ++++      LG++ ++    S   ++++VMLDGRIVG+   +   S+   L
Sbjct: 559 TESVDASTISRL---AFELGVVNISSAATS---ESVVVMLDGRIVGWCTPEECKSIAETL 612

Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
           R  K+ GE  +P  LEI Y+  P    G YPGLY+ + P RM+RPV  L     +++G  
Sbjct: 613 RYWKVNGENGVPLQLEIGYV--PPSNGGSYPGLYMSSQPARMVRPVKYLPLQKEDFVGPQ 670

Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
           EQ +M I  T +E  PG +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMG
Sbjct: 671 EQPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMG 730

Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
           TP     ++   K+YRLQT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAM
Sbjct: 731 TPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAM 790

Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           ILNKS++ERGF HG I+K+  + L+        +++              FG      +R
Sbjct: 791 ILNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVK-----------MFGFAPNSTIR 839

Query: 802 HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE-------N 854
                              ++  D L  DGL  VG  L E D + ++   S        N
Sbjct: 840 -------------------ESTRDMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVN 880

Query: 855 RYVTC---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
           R       RY   E+  VE VR+     + G+       I  RI R+P +GDKF+SR GQ
Sbjct: 881 RDGVTHYERYKDSEDAFVEEVRVIGA--DNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQ 938

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG+ S KWPA D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 939 KGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMF 978



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GYNY+G E +YSG+ G   QA I+ GVV+YQRLRHMV+DK+Q +      P      
Sbjct: 1016 MKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPI 1075

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                  G + VG    ERD + ++      ++R + C    K  MC
Sbjct: 1076 KGRKKGGGIRVGEM--ERDALLAHGTSFLLQDRLLNCSDYSKSWMC 1119


>gi|258574737|ref|XP_002541550.1| DNA-directed RNA polymerase I polypeptide 2 [Uncinocarpus reesii
           1704]
 gi|237901816|gb|EEP76217.1| DNA-directed RNA polymerase I polypeptide 2 [Uncinocarpus reesii
           1704]
          Length = 1243

 Score =  574 bits (1479), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 361/1011 (35%), Positives = 530/1011 (52%), Gaps = 152/1011 (15%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     + +   A  PHI SF+ + D+G  L+ A++DI    F          
Sbjct: 19  ERLFRNPPKDHTAYPMLAAAVRPHIDSFNALFDDGKVLEAALKDIGTKTFLDGVPETPEL 78

Query: 97  -----EIYGKTLKLNIVKAAISEPKVPAG--PVGIHFN----KYYPTEARQTRSVYSGPF 145
                E   K  + N +   I+E  +     P    F+    + +P E R+  + Y G  
Sbjct: 79  RRARREEGKKAPRRNRLSVRITELFLEKAVLPASNKFSPRNREIFPAECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              V +  +        +E+G+VPIML++ RCHL  L+P+QL+ER E  +E GGYFIV G
Sbjct: 139 RARVEYKVNNGDWKESVRELGQVPIMLRTNRCHLEKLSPSQLVERKEESEELGGYFIVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI +RRN P+AI RN++  RG  ++  GV IRSV+ D+++  NVLH++++G+ 
Sbjct: 199 NEKLIRMLIVSRRNFPMAIIRNSFTKRGATYTKYGVQIRSVRPDQTSQTNVLHYLSDGNV 258

Query: 266 RFMFSHRKSMCL----------------------------LGM------------MQSLH 285
            F FS RK+  L                            LGM            +++  
Sbjct: 259 TFRFSWRKNEYLVPVVMILKALIETNDREIFERLVGREGSLGMKNTFVTDRMELLLRTYK 318

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
             G+H++   + + G+ F+  L     ++ + ++    L   +LPHL +         DK
Sbjct: 319 AYGVHSRSKCRAYLGEKFRYVLGMS-ENVPDEDVGTEFLRKIVLPHLGNQNVTESQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK--------------KE 384
           F  +  +  KL+ +V G    D+ D++  QE++ GG LY  +LK              ++
Sbjct: 378 FNMILFIIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYGMILKERLEEWLRSIGPIARD 437

Query: 385 KSGTSAVLK------ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGF 435
            S  +  L       E D  +   A + E+   A+  FL+TGN+ +   + L L Q SG+
Sbjct: 438 WSNKNLGLPFTDARFEKDFISRIVARTNENIGGALEYFLSTGNLVS--PTGLDLQQPSGY 495

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            IMAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH
Sbjct: 496 TIMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 555

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L   C I+    +  +A +P VL  LG   +     S  E+++ V LDGRIVGY   + A
Sbjct: 556 LAHKCLIA--TSNLNVAGVPEVLSILG---VGSESSSSTEESVAVSLDGRIVGYCSPKQA 610

Query: 556 TSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
             +   LR  K+ G  KIP  LE+ Y+  P    G YPG+YLF+   RM RPV  L    
Sbjct: 611 RVISDTLRHWKVEGHPKIPVELEVGYV--PNSNGGQYPGVYLFSQCARMYRPVKYLPLDK 668

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           ++++G FEQ FM+I     +   GI+TH E   T  LS LAN+ P  D NQSPRNMYQCQ
Sbjct: 669 LDYVGPFEQPFMEIACVPSDIMSGISTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQ 728

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ MGTP  +  Y+   KLY+LQT  +P  RP  Y+   +DNFP G NA+VAVISYTG
Sbjct: 729 MGKQAMGTPGTSIDYRTDNKLYKLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTG 788

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDM+DAMI+NKS++ERGF +G I+K+    L+                            
Sbjct: 789 YDMDDAMIINKSAHERGFGYGTIYKTKIYPLDD--------------------------- 821

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPA---NKALEDKLGPDGLVYVGAKLNERDPMYSY--- 848
              +  R     K + K  FG  P         ++LG DGL +VG ++ + D + ++   
Sbjct: 822 ---KEARGRGKSKREIKKLFGFAPGGLVKAEWRNQLGEDGLPHVGGRVKDGDLVAAWHTV 878

Query: 849 -WKESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT 900
            +  +   Y+         +Y   EE  ++ +R+    +E G+       I YRI R P 
Sbjct: 879 QYDPAAETYLNVDKETHFLKYKDAEEGYIDSIRILG--SETGNEPCQAISIKYRIPRKPI 936

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKF+SR GQKG+CS  WPA D+PF++SG+ PDI+ NPH FPSRMTIG  
Sbjct: 937 IGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDIIINPHAFPSRMTIGMF 987



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSGV G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGVTGREFAADIYLGVVYYQRLRHMVNDKFQVR 1071


>gi|121699292|ref|XP_001267972.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Aspergillus clavatus NRRL 1]
 gi|119396114|gb|EAW06546.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Aspergillus clavatus NRRL 1]
          Length = 1234

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 356/1004 (35%), Positives = 521/1004 (51%), Gaps = 149/1004 (14%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEF------------- 96
           F  PP     F     A  PHI SF+ + D    L+  ++DI    F             
Sbjct: 23  FKNPPKDHTAFPALAAAIRPHIDSFNALFDGSKVLEAGMKDIGTKTFLDGDVETPEQKKA 82

Query: 97  -EIYGK------TLKLNIVKAAISEPKVPA-GPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            +  G+       L + I +  + +P +PA           YP+EAR+  + Y G     
Sbjct: 83  RKAEGRRAPKRNKLNVRIKEVFLEKPSIPATNKFATRNRNVYPSEARERHATYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G+VPIML++ RCHL   TP +L++  E  +E GGYFIV G+EK
Sbjct: 143 LEYQVNNGDWMESIRELGQVPIMLRTNRCHLEKATPEELVQHKEESEELGGYFIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+L+  +RN P+AI RN++  RG  ++  G+ IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLVVGKRNFPMAIVRNSFVRRGHTYTKYGIQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKSMCLL-------------------GMMQSLHEEGI-------------------- 289
           FS RKS  L+                   G++ S   +G+                    
Sbjct: 263 FSWRKSEYLVPAMMILKALVETNDREIFEGIVGSASSKGVSNTFVTDRVELLLRTYKGYN 322

Query: 290 -HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            H++   + + G+ FK  L       NE    ++ L   +LPHL +        +DKF  
Sbjct: 323 LHSRSSCRAYLGEKFKPVLGVPADMSNEDAGTEF-LRKVVLPHLGNQNVTGTQDYDKFKL 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------- 384
           +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK+                  
Sbjct: 382 VMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFGPILRDWSN 441

Query: 385 -KSG---TSAVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
             SG   T    +   +    R ++  I  A+  FL+TGN+ +   + L L Q SG+ +M
Sbjct: 442 RNSGAKFTDPAFERDFLSRVVRRTNENIGGALEYFLSTGNLVS--PTGLDLQQTSGYTVM 499

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF CPVHTPDG PCGLLNHL  
Sbjct: 500 AEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFFCPVHTPDGAPCGLLNHLAH 559

Query: 499 NCQISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
            C IS    S V ++Q+P +LV LG   +        E+++ V LDGRI+GY   + A  
Sbjct: 560 KCFIST---SDVNVSQLPKLLVQLG---VRSESSVSLEESVTVQLDGRIIGYCSPKQARQ 613

Query: 558 LVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIE 616
           +   +R  K+ G   IP+ LEI Y+  P    G YPG+Y+F+   RM RPV  L    ++
Sbjct: 614 IADTVRHWKVQGTNNIPRELEIGYV--PNSNGGQYPGVYMFSQAARMYRPVKYLPLDKLD 671

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           ++G FEQ FM+I     +   G++TH E + T+ LS +AN+ P  D NQSPRNMYQCQM 
Sbjct: 672 YVGPFEQPFMEIACLPDDLVAGVSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMS 731

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQTMGTP    +Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+ISYTGYD
Sbjct: 732 KQTMGTPGTAIQYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYD 791

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           M+DAMI+NKSS+ERGF HG I+K+    L+            S    S  +    FG   
Sbjct: 792 MDDAMIINKSSHERGFGHGTIYKTKIHSLDD---------KDSRRSKSRREITKLFGFAP 842

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WKES 852
              +R     +W+T                L  DGL +VGA++ E   + ++    +  S
Sbjct: 843 GGEIRA----EWRTT---------------LDEDGLPHVGARVKEGSLVAAWHTVRYDAS 883

Query: 853 ENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
            + YV         +Y   EE  ++ +R+     E G        + YR+ R P +GDKF
Sbjct: 884 SDSYVNVDGITHFVKYKDAEEGYIDSIRIMGA--ETGLEPCQALSVKYRVPRKPIIGDKF 941

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 942 SSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 74/167 (44%), Gaps = 9/167 (5%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
            ++GYNYYG E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +     +P       
Sbjct: 1026 KAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNPLTAQPVK 1085

Query: 826  KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
                 G + VG    ERD + ++      ++R + C  S +  +C    R    F     
Sbjct: 1086 GRAKGGGIRVGEM--ERDSLIAHGAAFILQDRLMNCSDSQRAWIC----RDCGSFLSTQV 1139

Query: 884  VTPNCAYIGYRIQRNPTVGDKFA-SRAGQKGICSVKWPAEDLPFTDS 929
               +      RI        + + +  G  GI   +  A +  F DS
Sbjct: 1140 AVSSAGSSKARIAATKNASSQHSGAPGGASGIVRCRRCAREAVFEDS 1186


>gi|425766233|gb|EKV04857.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
 gi|425779048|gb|EKV17139.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
          Length = 1268

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 342/1009 (33%), Positives = 527/1009 (52%), Gaps = 167/1009 (16%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDE------GL-DLAVEDIAPIEFEIYGKT-- 102
           F  PP     +  L     PHI SF+ + D+      GL D+ ++     E E Y +   
Sbjct: 23  FKNPPTDHTAYPSLAESIRPHIDSFNALFDDSKILEAGLKDIGIKTFLDGELETYEQKKA 82

Query: 103 -------------LKLNIVKAAISEPKVP-AGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
                        L + + +  + +P +P A        + YP+E R+  S Y G     
Sbjct: 83  RQAEGIRPPKRNRLNVRVREIFLDKPTLPPANKYATRNREIYPSECRERHSTYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G VPIM+++ RCHL   TP +L+   E  +E GG++IV G+EK
Sbjct: 143 LEYQVNNGDWMESVRELGNVPIMVRTNRCHLEKATPDELVRHNEESEELGGFYIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+L+  +RN+P++I R ++  RG  ++  GV IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLVVGKRNYPMSIIRGSFVKRGQTYTKFGVQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKSMCLLGMM----------------------------------------QSLHEEG 288
           FS RK+  L+ +M                                        ++ H   
Sbjct: 263 FSWRKNEYLIPVMMILKALAETNDREIFEAIVGGASSKGMKNTFVTDRVELLLRTYHAYQ 322

Query: 289 IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            H+Q+D +   G+ F+  L       +E E+    L   +LPHL +        WDKF  
Sbjct: 323 KHSQYDCRSHLGKAFRPVLGVPADMPDE-EVGTEFLRKVVLPHLGNENVTEAQDWDKFKL 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------------ 383
           ++ M  KL+  V G    D+ D++  QEI+ GG LY  +LK+                  
Sbjct: 382 ITFMIRKLYSTVAGDCAPDNPDAVSNQEILLGGFLYGMILKERIEEWLRSFGPIARDWSI 441

Query: 384 ------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                       E+   S ++K S+        +I +A+  FL+TGN+ +   + L L Q
Sbjct: 442 RNNGAKFTDEAFERDFLSKIVKRSN-------ENIGNALEYFLSTGNLVS--PTGLDLQQ 492

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
            SG+ ++AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCG
Sbjct: 493 TSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCG 552

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           LLNHL   C IS    +  ++Q+P  LV LG+   + V     +++++V LDGRI+GY  
Sbjct: 553 LLNHLAHKCFIS--TDNLDVSQLPRTLVQLGVRSESSVAL---DESVVVQLDGRIIGYCS 607

Query: 552 DQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
            + A  +   +R  K+ G+  IP+ LEI Y+  P    G YPG+Y+F+   RM RPV  L
Sbjct: 608 PKQAQRIADTIRYWKVEGKNNIPRELEIGYI--PNSSGGQYPGVYMFSQSARMYRPVKYL 665

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
           A   ++++G FEQ FM+I     +  PG++TH E + T+ LS +AN+ P  D NQSPRNM
Sbjct: 666 ALDKLDYVGPFEQPFMEIACVESDLIPGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNM 725

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQCQM KQTMGTP  +  ++   KLYR+QT  +P  RP  Y+   +DNFP G NA+VA+I
Sbjct: 726 YQCQMSKQTMGTPGTSIAHRTDNKLYRIQTGQTPIVRPPLYNAYGLDNFPNGMNAVVAII 785

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           SYTGYDM+DAMI+NKS++ERGF HG ++K+  + L    +                    
Sbjct: 786 SYTGYDMDDAMIINKSAHERGFGHGTVYKTKVVTLADNDS-------------------- 825

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE---DKLGPDGLVYVGAKLNERDPMYS 847
                     R   S +  TK  FG  P ++  E   + +  DG+ ++GA++ E D + +
Sbjct: 826 ----------RRTKSKREVTK-LFGFAPGDEVKEQVRNIIDEDGMPHLGARVKEGDKIAA 874

Query: 848 Y----WKESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
           +    +  + + YV         +Y   EE  V+ +R+    +E G+       I YRI 
Sbjct: 875 WHNVRFDPASDSYVNVDGVTHYMKYKDAEEGYVDSIRLMG--SESGNEPAQSLSIKYRIP 932

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
           R P +GDKF+SR GQKG+ S  WPA D+PF++SG+ PD++ NPH FPSR
Sbjct: 933 RKPVIGDKFSSRHGQKGVLSQLWPAVDMPFSESGMQPDLIINPHAFPSR 981



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E +YSG+ G    A I+ G+V+YQRLRHMV+DK+Q +
Sbjct: 1045 KAGYNYYGNEPLYSGITGREFSADIYMGLVYYQRLRHMVNDKFQVR 1090


>gi|322694313|gb|EFY86146.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Metarhizium
           acridum CQMa 102]
          Length = 1231

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 359/998 (35%), Positives = 538/998 (53%), Gaps = 145/998 (14%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFDFML-DEG----LDLAVEDIAPIEF----EIYG-- 100
           F  PP   + +  L L   PHI SF+ +  D+G    LD  + DI    F    E  G  
Sbjct: 23  FQNPPKDHSAYPALQLAVNPHIESFNRIFGDDGKKGLLDYGLTDIGTKTFLDGDERSGPE 82

Query: 101 --KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               L + I   ++ +P++P         +  P E R+    Y G  + T  +S +G   
Sbjct: 83  GKNRLHIRIKNVSLQKPQIPPSNKMARNREILPAECRERHVSYRGRLSATFEYSINGGDP 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             F +E+G+VPIM+KS RCHL N +PAQL+ER E  +E GGYFIV G EK++RLL  N+R
Sbjct: 143 IEFVRELGQVPIMIKSNRCHLENNSPAQLVERKEESEELGGYFIVNGIEKIIRLLQVNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS---- 274
           N P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+    
Sbjct: 203 NFPMAINRPSFQNRGAGYTSYGIIVRSVRPDETSQTNVLHYLNDGNITFRFSWRKNEYLI 262

Query: 275 ---MCLLGMMQSLHEE---------------------------------GIHTQHDSKVF 298
              M L  ++++   E                                 G++++  ++ +
Sbjct: 263 PVIMILKALVETNDREIFEGLIGPMGSKATENTFLTDRVELLLRTYKRYGLYSKSQTRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            G+ F+  L      +++ E+    L   +L HL +         DKF  L  M  KL+ 
Sbjct: 323 LGEKFRVVLGVP-ETMSDYEVGTEFLRRIVLVHLGNVNVAEEQDLDKFRMLLFMVRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK----------------------EKSGTS 389
           +  G   +D+ D++  QEI+ GG LY Q+LK+                      + S TS
Sbjct: 382 LAAGECAVDNPDALQNQEILLGGFLYSQILKERLDEFVSVGVRSSLRDFLRRHPQVSFTS 441

Query: 390 AVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
              ++      FR ++  + +A+  FL+TGN+ +   S L L Q +GF ++AE +N +R+
Sbjct: 442 EDFRKEFPGTIFRKANENLGNALEYFLSTGNLQS--PSGLDLQQTAGFTVVAEKLNFLRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYI 506
           +SHFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I ++++
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHLAHKCKIVTDHV 559

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++++P++   LG++  +  + S   + ++VM+DG+I+G+   + +  +   LR  K
Sbjct: 560 D---VSKLPALARELGVVDTSSALTS---ENVVVMMDGKILGWCSPKESLRIADCLRYWK 613

Query: 567 IVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LEI Y+  P    G YPG+Y+ + P RM+RPV  L     +++G +EQ +
Sbjct: 614 VEGTHGVPLQLEIGYV--PASNGGSYPGVYITSTPARMVRPVKYLPLQKEDFVGPYEQPY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G++TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP  
Sbjct: 672 MSIAVVPQETESGVSTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
             RY+   K YR+QT  +P  R P+H D    DNFP G NA+VAVISYTGYDM+DAMILN
Sbjct: 732 AIRYRTDNKSYRIQTGQTPIVRAPLHND-YGFDNFPNGMNAVVAVISYTGYDMDDAMILN 790

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           KS++ERGF HG I+K+  I L+        +++              FG   +      V
Sbjct: 791 KSAHERGFGHGTIYKTKKITLKDDSRTRAAKSVTKA-----------FGFAPHS----YV 835

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY-------- 856
           S  +Q             L+D    DGL +VG  + E D + + W      Y        
Sbjct: 836 SASYQ-----------GMLDD----DGLPHVGRLVQEGDVICA-WHTVTPDYNGNLVNLD 879

Query: 857 -VTC--RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKG 913
            +T   +Y   E   VE VR+     E GS T     I +RI R+P +GDKF+SR GQKG
Sbjct: 880 GITHYEKYKDGETGFVEEVRLIGA--ETGSETLQTVSIKFRIPRSPIIGDKFSSRHGQKG 937

Query: 914 ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           + S KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 938 VASQKWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMF 975



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GY+Y+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGYSYHGNEPMYSGITGEELGADIYIGVVYYQRLRHMVNDKFQVR 1059


>gi|320592799|gb|EFX05208.1| DNA-directed RNA polymerase 1 subunit beta [Grosmannia clavigera
           kw1407]
          Length = 1290

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 357/1008 (35%), Positives = 529/1008 (52%), Gaps = 153/1008 (15%)

Query: 51  DKNFGKPPDKQNEF-LLTLGA-PHIASFDFMLDEG--------LDLAVEDIAPIEFEIY- 99
           +K F  PP  Q+ + LL L   PHI SF+ +   G          L    IA I  +++ 
Sbjct: 31  EKLFRTPPTDQSAYPLLQLAVNPHIESFNAVFKNGSVEGTGAEASLIGHGIADIGTKVFL 90

Query: 100 ----------GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTV 149
                        L +     ++ +  VPA        +  P E R+  S Y G    T 
Sbjct: 91  DGDDRMLPEERNQLHIRYKDVSLQKCYVPATNKFAKNREILPAECRERHSTYRGKLMATF 150

Query: 150 AWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
            +  +        +++G+VPIM+KS RCHL  L+PA L+ER E  +E GGYFIV G EK+
Sbjct: 151 EYRINNGDPVEVVRDLGQVPIMVKSNRCHLEGLSPAALVERKEESEELGGYFIVNGIEKI 210

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
           +RLL   RRN P AI R +++NRG  ++  G+  RSV+ DE++  NVLH++ +G+  F F
Sbjct: 211 IRLLQVGRRNFPHAINRPSFQNRGAAYTPYGIITRSVRPDETSQTNVLHYLKDGNITFRF 270

Query: 270 SHRKS-------MCLLGMMQSLHEE---------------------------------GI 289
           S RK+       M L  ++++   E                                 G+
Sbjct: 271 SWRKNEFLIPVMMILKALVETNDREIFEAIVGPANSKGAENTYLTDRVELLLRTYEFYGL 330

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCL 342
           +++  ++ + G+ F+  L      ++  ++    L   +L HL +         DKF  L
Sbjct: 331 YSKSATRAYLGEKFRVVLGVPTT-MSNYDVGTEFLRKIVLVHLGNMDVTEAQDADKFRML 389

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------------ 384
             M  KL+ +V G   +D+ D++  QE++ GG LY Q+LK++                  
Sbjct: 390 IFMIRKLYALVAGDCAVDNPDAVQNQEVLLGGFLYGQILKEKLDEFLSVSLRGALRDYWR 449

Query: 385 KSGTSAVLKES---DIYAA-FRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
           +  T+ +  E+   D  AA FR S+  I +A+  FL+TGN+ +   S L L Q SGF ++
Sbjct: 450 RYPTNTMTTEAFARDFQAAVFRRSNENIGNALEYFLSTGNLISA--SGLDLQQVSGFTVV 507

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           AE +N +R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL  
Sbjct: 508 AEKLNFLRFLSHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAH 567

Query: 499 NCQISEYIPSKVLAQ-IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
            C+I   I   + A  + +++  LG + L+    +  E++++VMLDGR+VG+   + A  
Sbjct: 568 KCRI---ITGTIDASAVDAIVTELGAVSLS---SASTEESVVVMLDGRVVGWCSPKEAKR 621

Query: 558 LVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIE 616
           +   LR  K+ G   IP  LEI Y+  P+   G YPG+Y+ + P RM+RPV  LA    +
Sbjct: 622 IADTLRHWKVEGSHNIPAELEIGYV--PQSNGGSYPGVYMASAPSRMVRPVKYLALDKED 679

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           ++G  EQ +M I +  +E   G TTH EL  T+ LS LAN+ P  D NQSPRNMYQCQMG
Sbjct: 680 FVGPQEQPYMSIAVREQEVISGQTTHVELDPTNMLSILANMTPFSDFNQSPRNMYQCQMG 739

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQTMGTP     ++   K YRLQT  +P  R   ++    DNFP GTN +VAVISYTGYD
Sbjct: 740 KQTMGTPGTALAHRTDNKTYRLQTGQTPIVRAPLHNAYGFDNFPNGTNVVVAVISYTGYD 799

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE---TMYSGVDGSMMQAQIFFG 793
           M+DAMI+NKS++ERGF HG ++K+  I L+        +    M+    G+ +  Q+   
Sbjct: 800 MDDAMIINKSAHERGFGHGSVYKTKKITLKDDSRTRSAKHVGKMFGFAPGAFVSGQV--- 856

Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
                  R ++ D                       DGL Y+G ++   DP+ ++   S 
Sbjct: 857 -------RGLLDD-----------------------DGLPYIGMRVKMGDPLVAWHTVSA 886

Query: 854 NRYVTC----------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
           +   T           +Y   E+  VE VR+     E G+       +  RI R+PT+GD
Sbjct: 887 DYDGTLVNRDGQTHYEKYKDGEDAYVEEVRLIG--NENGNELLQTISVKLRIPRSPTIGD 944

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKG+CS KWP  D+PFT+SGL P+++ NPH FPSRMTIG  
Sbjct: 945 KFSSRHGQKGVCSQKWPTVDMPFTESGLQPEVIINPHAFPSRMTIGMF 992



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 39/47 (82%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++G+NY+G E MYSG+ G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1030 MKAGFNYHGNEPMYSGITGEELEADIYIGVVYYQRLRHMVNDKFQVR 1076


>gi|406700694|gb|EKD03859.1| DNA-directed RNA polymerase i polypeptide 2 [Trichosporon asahii
           var. asahii CBS 8904]
          Length = 1212

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 346/958 (36%), Positives = 511/958 (53%), Gaps = 121/958 (12%)

Query: 71  PHIASFDFML--DEG----LDLAVEDIA-PIEFE-------IYGKTLKLNIVKAAISEPK 116
           PHI SFD +   D+G    L L V+DI   I F+        YG  +   I + A+ +P 
Sbjct: 50  PHIESFDALTEGDDGQPGLLQLGVQDIGEKIIFDGKSEEGLPYGNKITYRISQVALGKPL 109

Query: 117 VPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF----TKEVGRVPIML 172
           V          + +P+EAR+  + Y     VT+ W      G T      +E G +PIM+
Sbjct: 110 VSDRDKTAVERRIFPSEARERLTTYRSRLTVTIKWKVTTADGTTRESEEVRECGMLPIMV 169

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
           KS RC++R +  A+L++ GE    WGGYFI+ G+EKLVR LI  RR+HPI + R ++  R
Sbjct: 170 KSARCNIRGMPAAELVKHGEESSSWGGYFIINGNEKLVRYLILPRRHHPINLYRPSFAKR 229

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQ 292
           G+ ++  G  IR V+ D+SA  N +H+++NG A   F+ RK   ++ ++  L  + +   
Sbjct: 230 GVSYTPYGCQIRCVRPDQSACTNTIHYLSNGGAMLRFAWRKVEYMIPLVLIL--KALVDA 287

Query: 293 HDSKVFFGQIFKE--------------------KLQYDLRHLN----------------- 315
            D ++F G +  E                     LQ   + L+                 
Sbjct: 288 SDLEIFEGLVQGEYDNTFLTDRVELLLRGQKSWNLQTGTQCLDYLGDKFRVVMNCPDDWT 347

Query: 316 EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
            V++  Y+L   +L HL    +KF  L  M  KL+ +V G    D+ DS    E++  G 
Sbjct: 348 NVQVGSYLLKKVVLVHLPQPREKFRMLLFMLRKLYSMVAGTSCPDNPDSPQHHEVLLPGF 407

Query: 376 LYLQLLKKE----------------KSGTSAVLKESDIYAAFRAS---SIESAMTNFLAT 416
           LY  ++K+                 + G +    +   + +        + S ++ FLAT
Sbjct: 408 LYAMIIKERFDESLNAVKAQINMDMRQGRAKSFDDPKYFPSVLTKVNFDVGSKLSYFLAT 467

Query: 417 GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
           GN+ +   + L L Q SGF ++AE +N  RY+SHFR +HRG++F E++++  R+L  ++W
Sbjct: 468 GNLVS--PTGLDLQQTSGFTVVAEKLNFYRYLSHFRCIHRGAFFAELKTTAVRKLLPESW 525

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE- 535
           GF+CPVHTPDG+PCGLLNHL+  CQI   +     ++IP +L + GM   T V  +  + 
Sbjct: 526 GFLCPVHTPDGSPCGLLNHLSHTCQI--VVKPLDTSKIPQLLSAHGM---TQVFATGIDG 580

Query: 536 -QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPG 593
              ++V LDGR++G+     A  L   LR LK  G+ ++P  LE+ Y+  P    G YPG
Sbjct: 581 RTNVVVQLDGRVIGWASPTKAKELADLLRKLKTEGDARVPLDLEVGYV--PVTKGGQYPG 638

Query: 594 LYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSN 653
           LYLF    RM+RPV  L    ++ +GTFEQV+MDI I  +E   G++TH EL  T  LS 
Sbjct: 639 LYLFGSRSRMMRPVTYLENDKMDHVGTFEQVYMDIAIKPEEVEKGVSTHVELDPTSMLSV 698

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
           LANL P  D NQSPRNMYQCQMGKQTMGTP    +++   K YR+Q P +P  RP  ++ 
Sbjct: 699 LANLTPFSDFNQSPRNMYQCQMGKQTMGTPSTALQHRTDNKFYRIQNPQTPIVRPSLHND 758

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
              D+FP  TNAI+AVISYTGYDMEDAMILNKSS+ERGF +G ++K+   +L+       
Sbjct: 759 YGFDDFPNATNAILAVISYTGYDMEDAMILNKSSHERGFGYGTVYKADIFDLKDA----- 813

Query: 774 TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLV 833
                        +++     +H+   R +  D           P  + L+     DGL 
Sbjct: 814 ------------ARSRTAAPTLHFGLGRDVKPDS----------PWRQFLDQ----DGLP 847

Query: 834 YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            +G ++   DP+ +Y  ++  R    +Y G E   ++ VR+    ++ G       +I  
Sbjct: 848 QLGTRVKSGDPLCAYIDDTTGRTKVHKYKGDETAYIDEVRVLG--SDLGDSELQKIHIKL 905

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           RI R+P +GDKF+SR GQKG+CSVK+   D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 906 RIPRSPVIGDKFSSRHGQKGVCSVKFKDIDMPFSESGMRPDVIINPHAFPSRMTIGMF 963



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            ++GYNY+G E MYSGV G  M+A IF     YQRLRH V+DK+Q +     DP  +
Sbjct: 1002 KAGYNYHGNEPMYSGVTGEEMRADIFLAPCAYQRLRHQVNDKYQARSTGPVDPLTR 1057


>gi|367019086|ref|XP_003658828.1| hypothetical protein MYCTH_2295109 [Myceliophthora thermophila ATCC
           42464]
 gi|347006095|gb|AEO53583.1| hypothetical protein MYCTH_2295109 [Myceliophthora thermophila ATCC
           42464]
          Length = 1234

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 360/1001 (35%), Positives = 529/1001 (52%), Gaps = 145/1001 (14%)

Query: 51  DKNFGKPPDKQNEF-LLTLGA-PHIASFDFMLDEG-----LDLAVEDIAPIEF------- 96
           +K F  PP  +  +  L L   PHI SF+ +         LD A+ +I    F       
Sbjct: 20  EKLFRNPPTDRTAYPALQLAVDPHIESFNALFRTDGRPSLLDHALAEIGTKTFLDGDERA 79

Query: 97  EIYGKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDG 155
              G+  L +      + + +VP         + +P E R+    Y G       +  + 
Sbjct: 80  APAGRNKLTIRYKSVTLQKSQVPPSNKFAKRREIFPAECRERHVSYRGKLTAVFEYRIND 139

Query: 156 KAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLIN 215
                F +E+G++PIM+KS +CHL N  PA L++R E  +E GGYFI+ G EK++RLL+ 
Sbjct: 140 GEPQEFVRELGQMPIMVKSNKCHLENNPPALLVQRKEESEELGGYFIINGIEKIIRLLLV 199

Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS- 274
           NRRN P+AI R ++ NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+ 
Sbjct: 200 NRRNFPLAIIRPSFANRGSSYTQYGIIVRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNE 259

Query: 275 ------MCLLGMMQSLHEE---------------------------------GIHTQHDS 295
                 M L  ++++   E                                 G++T+  +
Sbjct: 260 YLVPVMMILKALIETNDREIFEGLVGPPNSKGIENTFLTDRVELLLRTYKSYGLYTKTQT 319

Query: 296 KVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTCK 348
           + + GQ F+  L      +++ E+    L   +L HL       +   DKF  L  M  K
Sbjct: 320 RAYLGQKFRVVLGVP-DTMSDYEVGTEFLRKVVLVHLGCVDVTEEQDLDKFKMLLFMCRK 378

Query: 349 LFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEK----------------------S 386
           L+ +V G   +D+ D++  QEI+ GG LY  +LK+                        S
Sbjct: 379 LYALVAGDCAVDNPDAVQNQEILLGGFLYGMILKERLDELLSVSLKAALRDYLRRNPTLS 438

Query: 387 GTSAVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            TS+   +    + FR ++  + +A+  FL+TGN+ +   S L L Q SGF ++AE +N 
Sbjct: 439 FTSSSFAKDFPISIFRRTNENLGNALEYFLSTGNLQS--PSGLDLQQTSGFTVVAEKLNF 496

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
           +R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I  
Sbjct: 497 LRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAHKCKI-- 554

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
              S  ++ +P V + LG+   +    S   ++++VMLDGRI+G+   + A ++   LR 
Sbjct: 555 MTESVDVSAVPGVAMELGVNDYSSAATS---ESVVVMLDGRIIGWCTPKAAKAVADTLRR 611

Query: 565 LKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
            K+ G   IP  LEI Y+  P +G G YPG+Y+ + P RM+RPV  L  G  +++G  EQ
Sbjct: 612 WKVEGGHGIPVLLEIGYVP-PSRG-GSYPGIYMASQPSRMVRPVKYLPLGKEDFVGPHEQ 669

Query: 624 VFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
            +M I  T +E  PG +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQ+MGTP
Sbjct: 670 PYMSIACTEEEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQSMGTP 729

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
               RY+   K+YRLQT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMIL
Sbjct: 730 GAAIRYRTDNKMYRLQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIL 789

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTET---MYSGVDGSMMQAQIFFGVVHYQRL 800
           NKS++ERGF HG I+K+  I L+       ++T   M+    GS ++A            
Sbjct: 790 NKSAHERGFGHGTIYKTKKISLKDDTRTRTSKTITRMFGFAPGSPVRA------------ 837

Query: 801 RHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE------- 853
               SD+                 + L  DGL YVG  + E D + ++   S        
Sbjct: 838 ----SDR-----------------EMLDEDGLPYVGRLVREGDILCAWHTVSADYSGQLI 876

Query: 854 NRYVTC---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
           NR       RY   E+  +E VR+    ++ G+       I  RI R+P +GDKF+SR G
Sbjct: 877 NRDGITHWERYKEAEDAFIEEVRVIG--SDSGNEPLQTISIKLRIPRSPVIGDKFSSRHG 934

Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           QKG+ S KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 935 QKGVASQKWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMF 975



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G      I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 IKAGYNYHGNEPMYSGITGEEFACDIYIGVVYYQRLRHMVNDKYQVR 1059


>gi|401882641|gb|EJT46891.1| DNA-directed RNA polymerase i polypeptide 2 [Trichosporon asahii
           var. asahii CBS 2479]
          Length = 1197

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 347/960 (36%), Positives = 510/960 (53%), Gaps = 125/960 (13%)

Query: 71  PHIASFDFML--DEG----LDLAVEDIA-PIEFE-------IYGKTLKLNIVKAAISEPK 116
           PHI SFD +   D+G    L L V+DI   I F+        YG  +   I + A+ +P 
Sbjct: 50  PHIESFDALTEGDDGQPGLLQLGVQDIGEKIIFDGKSEEGLPYGNKITYRISQVALGKPL 109

Query: 117 VPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF----TKEVGRVPIML 172
           V          + +P+EAR+  + Y     VT+ W      G T      +E G +PIM+
Sbjct: 110 VSDRDKTAVERRIFPSEARERLTTYRSRLTVTIKWKVTTADGTTRESEEVRECGMLPIMV 169

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
           KS RC++R +  A+L++ GE    WGGYFI+ G+EKLVR LI  RR+HPI + R ++  R
Sbjct: 170 KSARCNIRGMPAAELVKHGEESSSWGGYFIINGNEKLVRYLILPRRHHPINLYRPSFAKR 229

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQ 292
           G+ ++  G  IR V+ D+SA  N +H+++NG A   F+ RK   ++ ++  L  + +   
Sbjct: 230 GVSYTPYGCQIRCVRPDQSACTNTIHYLSNGGATLRFAWRKVEYMIPLVLIL--KALVDA 287

Query: 293 HDSKVFFGQIFKE--------------------KLQYDLRHLN----------------- 315
            D ++F G +  E                     LQ   + L+                 
Sbjct: 288 SDLEIFEGLVQGEYDNTFLTDRVELLLRGQKSWNLQTGTQCLDYLGDKFRVVMNCPDDWT 347

Query: 316 EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
            V++  Y+L   +L HL    +KF  L  M  KL+ +V G    D+ DS    E++  G 
Sbjct: 348 NVQVGSYLLKKVVLVHLPQPREKFRMLLFMLRKLYSMVAGTSCPDNPDSPQHHEVLLPGF 407

Query: 376 LYLQLLKKE----------------KSGTSAVLKESDIYAAFRAS---SIESAMTNFLAT 416
           LY  ++K+                 + G +    +   + +        + S ++ FLAT
Sbjct: 408 LYAIIIKERFDESLNAVKAQINMDMRQGRAKSFDDPKYFPSVLTKVNFDVGSKLSYFLAT 467

Query: 417 GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
           GN+ +   + L L Q SGF ++AE +N  RY+SHFR +HRG++F E++++  R+L  ++W
Sbjct: 468 GNLVS--PTGLDLQQTSGFTVVAEKLNFYRYLSHFRCIHRGAFFAELKTTAVRKLLPESW 525

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE- 535
           GF+CPVHTPDG+PCGLLNHL+  CQI   +     ++IP +L + GM   T V  +  + 
Sbjct: 526 GFLCPVHTPDGSPCGLLNHLSHTCQI--VVKPLDTSKIPQLLSAHGM---TQVFATGIDG 580

Query: 536 -QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPG 593
              ++V LDGR++G+     A  L   LR LK  G+ ++P  LE+ Y+  P    G YPG
Sbjct: 581 RTNVVVQLDGRVIGWASPTKAKELADLLRKLKTEGDARVPLDLEVGYV--PVTKGGQYPG 638

Query: 594 LYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSN 653
           LYLF    RM+RPV  L    ++ +GTFEQV+MDI I  +E   G++TH EL  T  LS 
Sbjct: 639 LYLFGSRSRMMRPVTYLENDKMDHVGTFEQVYMDIAIKPEEVEKGVSTHVELDPTSMLSV 698

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
           LANL P  D NQSPRNMYQCQMGKQTMGTP    +++   K YR+Q P +P  RP  ++ 
Sbjct: 699 LANLTPFSDFNQSPRNMYQCQMGKQTMGTPSTALQHRTDNKFYRIQNPQTPIVRPSLHND 758

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIEL-ESGYNYY 772
              D+FP  TNAI+AVISYTGYDMEDAMILNKSS+ERGF +G ++K+   +L ++  +  
Sbjct: 759 YGFDDFPNATNAILAVISYTGYDMEDAMILNKSSHERGFGYGTVYKADIFDLKDAARSRT 818

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD-PANKALEDKLGPDG 831
              T++ G+                                 GRD   +      L  DG
Sbjct: 819 AAPTLHFGL---------------------------------GRDVKPDSPWRQFLDQDG 845

Query: 832 LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
           L  +G ++   DP+ +Y  ++  R    +Y G E   ++ VR+    ++ G       +I
Sbjct: 846 LPQLGTRVKSGDPLCAYIDDTTGRTKVHKYKGDETAYIDEVRVLG--SDLGDSELQKIHI 903

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             RI R+P +GDKF+SR GQKG+CSVK+   D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 904 KLRIPRSPVIGDKFSSRHGQKGVCSVKFKDIDMPFSESGMRPDVIINPHAFPSRMTIGMF 963



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            ++GYNY+G E MYSGV G  M+A IF     YQRLRH V+DK+Q +     DP  +
Sbjct: 1002 KAGYNYHGNEPMYSGVTGEEMRADIFLAPCAYQRLRHQVNDKYQARSTGPVDPLTR 1057


>gi|255948070|ref|XP_002564802.1| Pc22g07860 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591819|emb|CAP98074.1| Pc22g07860 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1249

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 338/1010 (33%), Positives = 526/1010 (52%), Gaps = 161/1010 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPI-----EFEIYGKT-- 102
           F  PP     +  L     PHI SF+ + ++   L+  + DI        E E Y +   
Sbjct: 23  FRNPPTDHTAYPSLAESIRPHIDSFNALFEDSKILEAGLRDIGTKTFLDGELETYEQKKA 82

Query: 103 -------------LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPFNVT 148
                        L + + +  + +P +P        N+  YP+E R+  + Y G     
Sbjct: 83  RQAEGVRPPKRNRLNVRVREIFLEKPTLPPTNKYTTRNREIYPSECRERHATYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G VPIM+++ RCHL   TP +L+   E  +E GG++IV G+EK
Sbjct: 143 LEYQVNNGDWMESVRELGNVPIMVRTNRCHLEKATPDELVRHKEESEELGGFYIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+LI  +RN+P++I R ++  RG  ++  GV IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLIVGKRNYPMSIIRGSFVKRGQTYTKFGVQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKSMCLLGMM----------------------------------------QSLHEEG 288
           FS RK+  L+ +M                                        ++ H   
Sbjct: 263 FSWRKNEYLIPVMMILKALAETNDREIFEAIVGAASSKGMSNTFVTDRVELLLRTYHAYQ 322

Query: 289 IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            H+Q+D +   G+ F+  L       +E E+    L   +LPHL +        WDKF  
Sbjct: 323 KHSQYDCRSHLGKAFRPVLGVPADMPDE-EVGTEFLRKVVLPHLGNENVTESQDWDKFKL 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------------ 383
           ++ M  KL+  V G    D+ D++  QEI+ GG LY  +LK+                  
Sbjct: 382 ITFMIRKLYSTVAGDCAPDNPDAVSNQEILLGGFLYGMILKERIEEWLRSFGPIARDWSI 441

Query: 384 ------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                       E+   S ++K S+        +I +A+  FL+TGN+ +   + L L Q
Sbjct: 442 RNNGAKFTDEAFERDFLSKIVKRSN-------ENIGNALEYFLSTGNLVSP--TGLDLQQ 492

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
            SG+ ++AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCG
Sbjct: 493 TSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCG 552

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           LLNHL+  C I+    +  ++ +P  LV LG+   + V     +++++V LDGRI+GY  
Sbjct: 553 LLNHLSHKCLIA--TDNLDVSHLPRTLVQLGVRSESSVAL---DESVVVQLDGRIIGYCS 607

Query: 552 DQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
            + A  +   +R  K+ G+  IP+ LE+ Y+  P    G YPG+Y+F+   RM RPV  L
Sbjct: 608 PKQAQRIADTIRYWKVEGKNNIPRELEVGYI--PNSSGGQYPGVYMFSQSARMYRPVKYL 665

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
           A   ++++G FEQ FM+I     +  PG++TH E + T+ LS +AN+ P  D NQSPRNM
Sbjct: 666 ALDKLDYVGPFEQPFMEIACVESDLIPGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNM 725

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQCQM KQTMGTP  +  ++   KLYR+QT  +P  RP  Y+   +DNFP G NA+VA+I
Sbjct: 726 YQCQMSKQTMGTPGTSIAHRTDNKLYRIQTGQTPIVRPPLYNAYGLDNFPNGMNAVVAII 785

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           SYTGYDM+DAMI+NKS++ERGF HG ++K+  + L             S  + S  +   
Sbjct: 786 SYTGYDMDDAMIINKSAHERGFGHGTVYKTKVVTLAEN---------DSRRNKSKREVTK 836

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY-- 848
            FG      ++  V                    + +  DG+ ++GA++ E D + ++  
Sbjct: 837 LFGFAPGDEIKDQV-------------------RNTIDEDGMPHLGARVKEGDKIAAWHN 877

Query: 849 --WKESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
             +  + + YV         +Y   EE  V+ +R+    +E G+       I YRI R P
Sbjct: 878 VRFDPASDSYVNVDGVTHYMKYKDAEEGYVDSIRIMG--SESGNEPAQSLSIKYRIPRKP 935

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +GDKF+SR GQKG+ S  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 936 VIGDKFSSRHGQKGVLSQLWPAVDMPFSESGMQPDLIINPHAFPSRMTIA 985



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E +YSGV G    A I+ G+V+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYYGNEPLYSGVTGREFSADIYMGLVYYQRLRHMVNDKFQVR 1071


>gi|171696212|ref|XP_001913030.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948348|emb|CAP60512.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1234

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 349/1002 (34%), Positives = 525/1002 (52%), Gaps = 147/1002 (14%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFML-DEG----LDLAVEDIAPIEF------- 96
           +K F  PP  Q  +  L     PHI +F+ +  ++G    LD A+ +I    F       
Sbjct: 20  EKLFRNPPTDQTAYPALQEAVNPHIEAFNALFRNDGKPSLLDHAIAEIGTKTFLDGDERA 79

Query: 97  -EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDG 155
                  L +      + + +V          + +P E R+    Y G     + +  + 
Sbjct: 80  DPASRNKLTVRYKSVTLQKAQVAQSNKFAKRREIFPAECRERHVSYRGKLTAVLEYRINN 139

Query: 156 KAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLIN 215
                F +E+G++PIM+KS +CHL N +PAQL+ER E  +E GGYF++ G EK++RLL+ 
Sbjct: 140 GDAHEFVRELGQMPIMVKSNKCHLENNSPAQLVERKEESEELGGYFVINGIEKIIRLLLM 199

Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS- 274
           N+RN P+AI R ++ NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+ 
Sbjct: 200 NKRNFPLAITRPSFTNRGPSYTPHGIIVRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNE 259

Query: 275 ------MCLLGMMQSLHEE---------------------------------GIHTQHDS 295
                 M L  ++++   E                                  ++T+  +
Sbjct: 260 YLVPVMMILKALVETNDREIFESLVGPPTSKGVENTFLTDRVELLLRTYKTYNLYTKKQT 319

Query: 296 KVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTCK 348
           + + GQ F+  L      + + E+    L   +L HL       +   DKF  L  M  K
Sbjct: 320 RAYLGQKFRVVLGVP-DTMTDYEVGTEFLRKVVLVHLGCNDVTEEQDTDKFKMLLFMCRK 378

Query: 349 LFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KSGTSAVLKE--------S 395
           L+ +V G   +D+ D++  QEI+ GG LY  +LK+       +     L++        S
Sbjct: 379 LYALVAGDCAVDNPDAVQNQEILLGGFLYGMILKERLEDLLSTALRGALRDHLRRNPTDS 438

Query: 396 DIYAAFRA-----------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            +  +FR             +I +A+  FL+TGN+ +   S L L Q SGF ++AE +N 
Sbjct: 439 FVSESFRKQFPGHIFRKTNENIGNALEYFLSTGNLQS--PSGLDLQQVSGFTVVAEKLNF 496

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
           +R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C+I+ 
Sbjct: 497 LRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKIT- 555

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
              +  ++ +P VL+ LG+   +    +   ++++VMLDG++VG+   Q A  L   LR 
Sbjct: 556 -TKAADVSAVPGVLLELGVNNYSSAATT---ESVVVMLDGKVVGWCAPQNAKPLADTLRQ 611

Query: 565 LKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
           LK+ G   IP  LEI Y+  P    G YPG+Y+ +   RM+RPV  LA    + +G +EQ
Sbjct: 612 LKVEGGHGIPLELEIGYV--PTSNGGSYPGIYMASNTSRMVRPVKYLALNKEDMVGPYEQ 669

Query: 624 VFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
            +M I    +E  PG +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP
Sbjct: 670 PYMSIACVEQEIVPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTP 729

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
                ++   K+YR+QT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMI+
Sbjct: 730 GAALAHRTDNKMYRIQTGQTPVVRSPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMII 789

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTET---MYSGVDGSMMQAQIFFGVVHYQRL 800
           NKS++ERGF HG I+K+  I L+       ++T   M+    GS ++A            
Sbjct: 790 NKSAHERGFGHGSIYKTKKISLKDDSRTRSSKTTTKMFGFAPGSPIRA------------ 837

Query: 801 RHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC- 859
               SD+                 + L  DGL YVG  + E D + + W      Y    
Sbjct: 838 ----SDR-----------------EMLDEDGLPYVGRLVREGD-IIAAWHTVSADYSGKL 875

Query: 860 ----------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
                     RY   E+  +E VR+    ++ G+       I  R+ R+P +GDKF+SR 
Sbjct: 876 VNRDGITHWERYKEAEDAFIEEVRVIG--SDTGNEPLQTLSIKLRVPRSPVIGDKFSSRH 933

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG+CS KWPA D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 934 GQKGVCSQKWPAVDMPFSETGIQPDVIINPHAFPSRMTIGMF 975



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G      I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGYNYHGNEPMYSGITGEEFMCDIYIGVVYYQRLRHMVNDKYQVR 1059


>gi|340923939|gb|EGS18842.1| RNA polymerase-like protein [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 1235

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 358/999 (35%), Positives = 525/999 (52%), Gaps = 141/999 (14%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG-----LDLAVEDIAPIEF------- 96
           +K F  PP  +  +  L     PHI SF+ +         LD A+ +I    F       
Sbjct: 20  EKLFRNPPTDRTAYPALQEAVNPHIESFNALFRTDGKPSLLDHAIAEIGTKTFLDGDERA 79

Query: 97  EIYGKTLKLNIVKAAIS--EPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
              GK  KL I   +I+  + +VP         + +P E R+    Y G    T  +  +
Sbjct: 80  APEGKN-KLTIRYKSITLQKSQVPPSNKWAKRREIFPAECRERHVTYRGKLTATFEYRIN 138

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                 F +E+G++PIM+KS +CHL N  PA L++R E  +E GGYFI+ G EK++R+L+
Sbjct: 139 DGEPQEFVRELGQMPIMVKSNKCHLENNPPALLVQRKEESEELGGYFIINGIEKIIRMLL 198

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS 274
            NRRN P+AI R ++ NRG  ++  G+ +RSV+ DE++  NVLH++++G+  F FS RK+
Sbjct: 199 VNRRNFPLAIIRPSFTNRGPSYTQYGIIVRSVRPDETSQTNVLHYLSDGNVTFRFSWRKN 258

Query: 275 MCLLGMM----------------------------------------QSLHEEGIHTQHD 294
             L+ +M                                        ++  + G++T+  
Sbjct: 259 EYLVPVMMILKALVETNDREIFEGLVGPPNSKGIENTFLTDRVELLLRTYKKYGLYTKSQ 318

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTC 347
           ++ + G  F+  L      +++ E+    L   +L HL       +   DKF  L  M  
Sbjct: 319 TRAYLGSKFRVVLGVP-DTMSDYEVGTEFLRKIVLVHLGCVNVTEEQDLDKFKMLLFMCR 377

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEK---------------------- 385
           KL+ +V G   +D+ D++  QEI+ GG LY  +LK+                        
Sbjct: 378 KLYALVAGDCAVDNPDAVQNQEILLGGFLYGMILKERLEELLSVSLRAALRDYLRRNPTI 437

Query: 386 SGTSAVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           S TS   ++    A FR ++  I +A+  FL+TGN+ +   S L L Q SGF ++AE +N
Sbjct: 438 SFTSQTFQKDFPIAIFRRTNENIGNALEYFLSTGNLQS--PSGLDLQQVSGFTVVAEKLN 495

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
             R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I 
Sbjct: 496 FWRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAHKCKI- 554

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
               +   + +P  ++ LG+   +    S   ++++VMLDGRI+G+   + +  +   LR
Sbjct: 555 -MTDTLDTSAVPGAVMELGVNDYSSAATS---ESVVVMLDGRIIGWCTPKASRIIAETLR 610

Query: 564 MLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFE 622
             K+ G   IP  LEI Y+  P KG G YPG+Y+ + P RM+RPV  LA    +++G  E
Sbjct: 611 RWKVEGNHGIPLQLEIGYVP-PSKG-GSYPGIYMASKPARMVRPVKYLALAKEDFVGPHE 668

Query: 623 QVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
           Q +M I  T +E  PG  TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGT
Sbjct: 669 QPYMSIACTPEEIIPGDHTHVEYDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGT 728

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
           P    +Y+   K+YRLQT  +P  R   ++    DNFP GTNA+VAVISYTGYDM+DAMI
Sbjct: 729 PGAAIKYRTDNKMYRLQTGQTPIVRSPLHNVYGFDNFPNGTNAVVAVISYTGYDMDDAMI 788

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           +NKS++ERGF HG I+K+  I L+       ++T+              FG         
Sbjct: 789 INKSAHERGFGHGTIYKTKKISLKDDTRTRTSKTITK-----------MFG--------- 828

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN---RYVTC 859
                     +    P      + L  DGL +VG  + E D + ++   S +   + V  
Sbjct: 829 ----------FAPGTPIRPEYREMLDEDGLPHVGRLVREGDILCAWHTVSADYSGKLVNK 878

Query: 860 -------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
                  RY   E+  VE VR+    +E G+       I  RI R+P +GDKF+SR GQK
Sbjct: 879 DGITHWERYKDAEDAFVEEVRVIG--SETGNEPLQTVSIKLRIPRSPVIGDKFSSRHGQK 936

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G+CS KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 937 GVCSQKWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMF 975



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++G+NY+G E MYSG+ G      I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGFNYHGNEPMYSGITGEEFACDIYIGVVYYQRLRHMVNDKYQVR 1059


>gi|453084975|gb|EMF13019.1| DNA-directed RNA polymerase I subunit beta [Mycosphaerella
           populorum SO2202]
          Length = 1204

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 359/995 (36%), Positives = 523/995 (52%), Gaps = 142/995 (14%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEGLDLAVEDIAPIEF-------EIYGKTLK 104
           F  PP  ++ + L      PH+ SF+ +    L+  + DI    F       +     L+
Sbjct: 24  FRNPPAGKSAYPLLQETIRPHVDSFNSIFTGQLEHGLRDIGTKTFLDGNPRDDGPKNRLQ 83

Query: 105 LNIVKAAISEPKVP-AGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK 163
           + +    + +P++P +        +  P E R+    Y G F   + W  +        +
Sbjct: 84  MRVASVFLDKPQLPPSNKTEATRREILPVECRERHVTYRGRFRGRLEWRINDGPWKESPR 143

Query: 164 EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
           + G +PIML+S RCHL  L+P +L+   E  +E GGYFIV G EKL+R+LI NRRN+P+A
Sbjct: 144 DFGMLPIMLRSNRCHLEGLSPKKLVNAREETEELGGYFIVNGIEKLIRMLIVNRRNYPMA 203

Query: 224 IKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG---M 280
           I R ++ NRG  +S  GV IRSV+ D+++  NVLH++ +G+  F FS RK+  L+    +
Sbjct: 204 IIRPSFVNRGTAYSKFGVQIRSVRPDQTSQTNVLHYLNDGTLTFRFSWRKNEYLIPAVMV 263

Query: 281 MQSLHE-------EGI-------------------------------HTQHDSKVFFGQI 302
           M++L E       EGI                               HT+   + + G+ 
Sbjct: 264 MKALAETNDREIFEGIVGPAGGKDMDTKQFVIDRVELLLRTFKPYNMHTKAKCRAYLGEK 323

Query: 303 FKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFHVVQG 355
           F+  L       NE ++   +L   +LPHL  Y        DKF  L  MT KL+ +V+G
Sbjct: 324 FRPVLGLPDDISNE-DVGTELLRRIVLPHLGSYDVTEANDMDKFRMLLFMTRKLYALVEG 382

Query: 356 MVQLDSEDSIMLQEIMTGGSLYLQLLKK--EKSGTSAVLKESDIYAA------------- 400
              +D+ D++  QEI+  G LY  ++K+  E+  T+AV  +  I+ A             
Sbjct: 383 ECAVDNPDAVQNQEILLPGHLYGMIVKERIEEWLTTAVRTQLSIWGAQNQYPSFLSKEFE 442

Query: 401 --FRASSIESAMTN-------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHF 451
             F    I     N       F++TGN+ +   S L L Q SGF ++AE IN  R++SHF
Sbjct: 443 RDFMTKVIRKTNENLGQGLDYFMSTGNLVS--PSGLDLQQVSGFTVVAEKINFYRFISHF 500

Query: 452 RAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVL 511
           R VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+    S   
Sbjct: 501 RMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIA--TSSADT 558

Query: 512 AQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-E 570
             +P V+  LG   +T   ++    ++ V L+GRI+GY   + A  +   LR  K+ G  
Sbjct: 559 THLPDVIAQLG---VTSTSEASLNDSVTVQLNGRILGYCSPKQAKVIHDTLRYWKVEGTH 615

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICI 630
            +P  LEI Y+  P    G YPG+Y+F+   RM+RPV  L    ++ IG FEQ +M I  
Sbjct: 616 NVPLDLEIGYV--PLSAGGQYPGVYMFSEAARMIRPVKYLPLEKLDHIGPFEQPYMSIAC 673

Query: 631 TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ 690
           T  E   G ++H E   T+ LS +AN  P  + NQSPRNMYQCQMGKQTMGTP    +Y+
Sbjct: 674 TEPEIASGDSSHVEFDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGTALKYR 733

Query: 691 GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYER 750
              K YRLQT  +P  R   ++   +DNFP GTNA+VAVISYTGYDM+DAMILNKS++ER
Sbjct: 734 TDNKSYRLQTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHER 793

Query: 751 GFAHGCIFKSMFIELESGYNYYGTE--TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
           GF +G I+K+  ++L       G +  +++    G +++AQ                  W
Sbjct: 794 GFGYGTIYKAKKVDLNEDKGRRGAQVTSVFGFAPGGLIKAQ------------------W 835

Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK--------ESENRYVTC- 859
           +             L+D    DGL  VG K+ E D + +++         E EN+     
Sbjct: 836 RA-----------TLDD----DGLPAVGTKVREGDAIAAHYSVTKDPHTGEYENKDGVTH 880

Query: 860 --RYSGKEEMCVEVVRMSSGFTEGGSVTP-NCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
             RY   EE  VE V++     E G+  P     I +RI R+P +GDKF+SR GQKG+ S
Sbjct: 881 IHRYKDAEEAYVEEVKIIG--NELGNGEPFQAVSIRFRIPRSPVIGDKFSSRHGQKGVMS 938

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            KWP  D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 939 QKWPTTDMPFSESGMQPDVIINPHAFPSRMTIGMF 973



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 12/156 (7%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYG E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +      P        
Sbjct: 1015 AGYNYYGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKFQVRTTGPVTPLTGQPIKG 1074

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
                G + VG    ERD + ++      ++R + C    K  +C    +    F    SV
Sbjct: 1075 RAKGGGIRVGEM--ERDALIAHGTSFLLQDRLMNCSDYTKAHIC----KKCGSFL---SV 1125

Query: 885  TPNCAYIGYRIQRNPTVGDKFASR-AGQKGICSVKW 919
             P+    G R +    V  +  SR A Q    S+ W
Sbjct: 1126 QPSSGQFGTRRREGGRVRCRRCSRKASQTDATSLCW 1161


>gi|315039663|ref|XP_003169207.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma gypseum CBS
           118893]
 gi|311337628|gb|EFQ96830.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma gypseum CBS
           118893]
          Length = 1243

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 361/1014 (35%), Positives = 523/1014 (51%), Gaps = 164/1014 (16%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEFEIYGKT------- 102
           F  PP  +  +     A  PHI SF+ + ++   LD A++DI    F I G +       
Sbjct: 22  FRHPPKDKTAYPALAAAIRPHIDSFNALFEDSKVLDAALKDIGIKSF-IDGNSKTPEEKA 80

Query: 103 --------------LKLNIVKAAISEPKVPAGPVGIHFNKY-------YPTEARQTRSVY 141
                         L + I +  + +  +PA       NKY       YP E R+  + Y
Sbjct: 81  ARREDGRRAPKRNKLSVRITELFLEKAVLPAS------NKYSTRNREIYPAECRERHATY 134

Query: 142 SGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYF 201
            G     + +  +        +E+G+VPIML+S RCHL   TPAQL++R E  +E GGYF
Sbjct: 135 RGKLRARLEYRVNNGEWKESVRELGQVPIMLRSNRCHLEKATPAQLVDRKEESEELGGYF 194

Query: 202 IVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVT 261
           +V G+EKL+R+LI  +RN P AI RN+++ RG  ++  GV IRSV+ D+++  NVLH++ 
Sbjct: 195 VVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQIRSVRPDQTSQTNVLHYLN 254

Query: 262 NGSARFMFSHRKS-------MCLLGMMQSLHEE--------------------------- 287
           +G+  F FS RK+       M L  ++++   E                           
Sbjct: 255 DGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLVGGEGSLGIENTFVTDRVELLL 314

Query: 288 ------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW----- 336
                 G+H++   + + G  F+  L      + + ++    L   +LPHL +       
Sbjct: 315 RTYKAYGVHSRSKCRAYLGSKFRFVLGMP-EDVPDEDVGTEFLRKIVLPHLGNQNVTETQ 373

Query: 337 --DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KSGTS 389
             DKF  +  M  KL+++V G    D+ D++  QE++ GG LY  LLK+      KS   
Sbjct: 374 NNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYLYGMLLKERLEEWLKSVGP 433

Query: 390 AV----LKESDIYAAFRASSIE----------------SAMTNFLATGNVSAGKNSTLQL 429
            V    LK  D  A F   S E                 AM  FL+TGN+ +   + L L
Sbjct: 434 IVRDWRLKNDD--AKFTDPSFERDFLARVIGRTNENIGGAMEYFLSTGNLVS--PTGLDL 489

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
            Q SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+P
Sbjct: 490 QQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSP 549

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
           CGLLNHL   C IS    +  ++ +P VL  LG   +T       E+++ V+LDG+I+GY
Sbjct: 550 CGLLNHLAHKCLIS--TSNLDVSGVPGVLAGLG---VTSESSCSTEESIPVLLDGKILGY 604

Query: 550 ILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
              + +  +   LR  K+ G K IP  LEI Y+  P    G YPG+Y+F+   RM RPV 
Sbjct: 605 CTPKQSRVIADTLRYWKVQGHKHIPVELEIGYV--PSSNGGQYPGVYMFSEAARMYRPVR 662

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
            L    ++++G FEQ +M+I     +   G++TH E   T  LS LAN+ P  D NQSPR
Sbjct: 663 YLPLDRLDYVGPFEQPYMEIACVASDIKNGVSTHIEFDPTHILSILANMTPFSDFNQSPR 722

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           NMYQCQMGKQ MGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VA
Sbjct: 723 NMYQCQMGKQAMGTPGTAIEYRTDNKLYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVA 782

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           VISYTGYDM+DAMI+NKSS+ERGF +G I+K+    L+        +    G   S    
Sbjct: 783 VISYTGYDMDDAMIINKSSHERGFGYGTIYKTKIYALD--------DKESRGRGKSKRAI 834

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE------- 841
              FG         ++  +W++               +L  DGL ++GAK++E       
Sbjct: 835 TKLFGFAP----GGLIKAEWKS---------------QLDEDGLPHIGAKVSEGSLVCAW 875

Query: 842 ----RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQR 897
                DP    +   + +    +Y   EE  V+ VR+    +E G+       I YR+ R
Sbjct: 876 YTVQYDPATDTYINVDKQTHFLKYKDGEEGFVDSVRVLG--SETGNEVCQAVSIKYRVPR 933

Query: 898 NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            P +GDKF+SR GQKG+ S  WP+ D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 934 RPVIGDKFSSRHGQKGVLSQLWPSADMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVR 1071


>gi|380495062|emb|CCF32685.1| DNA-directed RNA polymerase I subunit RPA2 [Colletotrichum
           higginsianum]
          Length = 1225

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 355/1001 (35%), Positives = 532/1001 (53%), Gaps = 152/1001 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFML-DEGLDLAVEDIAPIEFEIY----------G 100
           F  PP     +  L    +PHI SF+ +   +G  L    +  I  + Y          G
Sbjct: 23  FRNPPKDHTAYPALQEAVSPHIDSFNALFRTDGKSLLARGLEDIGTKTYLDGDDRAGLEG 82

Query: 101 KT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           K  L + I   ++ + ++P         +  P E R+    Y G  + T  +  +     
Sbjct: 83  KNRLSIRIKGVSLQKSQLPPSNKFARNREILPAECRERHCTYRGRLSATFEYRINNGDPK 142

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
            F +E+G+VPIM+KS RCHL   +PAQL++R E  +E GGYFIV G EK++R+L  NRRN
Sbjct: 143 EFVRELGQVPIMVKSNRCHLEGNSPAQLVQRKEESEELGGYFIVNGIEKIIRMLQVNRRN 202

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS----- 274
            P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++++G+  F FS RK+     
Sbjct: 203 FPMAINRPSFQNRGQGYTPYGIILRSVRPDETSQTNVLHYLSDGNMTFRFSWRKNEYLVP 262

Query: 275 --MCLLGMMQSLHEE---------------------------------GIHTQHDSKVFF 299
             M L  ++++   E                                 G++++ +++ + 
Sbjct: 263 VMMILKALVETNDREIFEGLIGLSGSKSAKNTFLTDRVELLLRTYKSYGLYSKTETRAYL 322

Query: 300 GQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DKFLCLSHMTCKLFHV 352
           G+ F+  L      ++  ++    L   +L HL +         DKF  L  M  KL+ +
Sbjct: 323 GEKFRVVLGVP-DTMSNYDVGTEFLRKIVLVHLGNINVTEKEDNDKFRMLLFMIRKLYAL 381

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--EKSGTSAV---LKE------------S 395
           V G   +D+ D++  QE++ GG LY  +LK+  E+  T+AV   L+E             
Sbjct: 382 VAGDCSVDNPDAVQNQEVLLGGFLYGMILKERLEEFLTTAVRLSLREWTRKHPATPFTSQ 441

Query: 396 DIYAAFRASSIESAMTN-------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
           D    F A+    A  N       FL+TGN+++   S L L Q +GF ++AE +N +R++
Sbjct: 442 DFAKEFPANIFRHANENIGNGLEYFLSTGNLTS--PSGLDLQQTAGFTVVAEKLNFLRFL 499

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIP 507
           SHFR +HRG++F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I +E + 
Sbjct: 500 SHFRMIHRGAFFAELKTTTVRKLLPESWGFMCPVHTPDGSPCGLLNHLAHKCKIMTEAVD 559

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
           +   ++IP ++  LG +  +    +  +++++VMLDGRIVG+   + +  +   LR  K+
Sbjct: 560 A---SKIPGLVAELGAVETS---SAATDESVVVMLDGRIVGFCTPRESLRIADTLRYWKV 613

Query: 568 VG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
            G   +P  LE+ Y+  P    G YPG+YL + P RM+RPV  L     +++G  EQ +M
Sbjct: 614 EGTHGVPLQLEVGYV--PPSNGGSYPGIYLASAPARMVRPVKYLPLDKEDFVGPHEQPYM 671

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
            I +   E   G +TH E++ T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP   
Sbjct: 672 SIAVVENEIVSGESTHVEVTPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATA 731

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
            RY+   K+YRLQ+  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMILNKS
Sbjct: 732 LRYRTDNKMYRLQSGQTPVVRSPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKS 791

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           ++ERGF HG I+K+  I L+               D S  +A     V +  +L      
Sbjct: 792 AHERGFGHGTIYKTKKITLK---------------DESRTRA-----VKNISKLFGFAPG 831

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK-- 864
            +    Y G          +L  DGL YVG  + E D + ++        V+  YSGK  
Sbjct: 832 GFVKGHYRG----------QLDEDGLPYVGRLVQEGDVLCAW------HTVSADYSGKLI 875

Query: 865 --------------EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
                         E   VE VR+    +E G+       I  R+ R+P +GDKF+SR G
Sbjct: 876 NLDGQTHYEKYKESETAFVEEVRVIG--SETGNEPAQTISIKLRVPRSPVIGDKFSSRHG 933

Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           QKG+ S KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 934 QKGVASQKWPAVDMPFSESGMQPDVIINPHAFPSRMTIGMF 974



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1012 MKAGYNYHGNEPMYSGITGEELAADIYVGVVYYQRLRHMVNDKYQVR 1058


>gi|169769719|ref|XP_001819329.1| DNA-directed RNA polymerase I subunit RPA135 [Aspergillus oryzae
           RIB40]
 gi|238487962|ref|XP_002375219.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Aspergillus flavus NRRL3357]
 gi|83767188|dbj|BAE57327.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220700098|gb|EED56437.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Aspergillus flavus NRRL3357]
          Length = 1237

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 352/1010 (34%), Positives = 521/1010 (51%), Gaps = 161/1010 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF------------- 96
           F  PP  +  +  L     PH+ SF+ + ++   L   ++DI    F             
Sbjct: 23  FKNPPKDRTAYPALAASIKPHVDSFNALFEDSKILQAGLKDIGTKTFIDGEAETPEQKKA 82

Query: 97  -EIYGKT------LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPFNVT 148
            +  G+       L + I +  + +P +P        N+  YP+E R+  + Y G     
Sbjct: 83  RQAEGRKAPKRNKLHVRIKEVFLEKPAIPPTNKFTTRNRNIYPSECRERHATYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G+VPIM+++ RCHL   TPA+L+E  E  +E GGYFIV G+EK
Sbjct: 143 IEYRVNNGDWMEAVRELGQVPIMMRTNRCHLEKATPAELVEHKEESEELGGYFIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+LI  +RN P+AI R ++  RG  ++  GV IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLIVGKRNFPMAIVRGSFVKRGHTYTKFGVQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKSMCLL-------------------GMMQSLHEEGI-------------------- 289
           FS RK+  L+                   G++ S   EGI                    
Sbjct: 263 FSWRKNEYLVPVMMILKALVETNDREIFEGLVGSASSEGINNTFVTDRVELLLRTYKGYN 322

Query: 290 -HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            H++   + + G+ FK  L   +   NE E     L   +LPHL +        +DKF  
Sbjct: 323 LHSRSACRAYLGEKFKPVLGVPMDMSNE-EAGTEFLRKVVLPHLGNQNVTETQDYDKFKL 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------------ 383
           +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK+                  
Sbjct: 382 IMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFGPILRDWSM 441

Query: 384 ------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                       E+   S V+K S+        +I  A+  FL+TGN+ +   + L L Q
Sbjct: 442 RNHGAKFTDPSFERDFLSKVVKRSN-------ENIGGALEYFLSTGNLVS--PTGLDLQQ 492

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
            SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCG
Sbjct: 493 TSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCG 552

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           LLNHL   C IS       ++ +P +LV LG   +        E+++ V LDGRIVG+  
Sbjct: 553 LLNHLAHKCLIS--TSDIDVSHLPRLLVQLG---VRSESSVSLEESVTVQLDGRIVGFCS 607

Query: 552 DQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
            + A  +   LR  K+ G   +P+ LEI Y+  P    G YPG+Y+F+   RM R V  L
Sbjct: 608 PKQARMIADTLRHWKVEGSHNVPRELEIGYV--PNSNGGQYPGIYMFSQAARMYREVKYL 665

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
               ++++G FEQ FM+I     +   GI+TH E + T+ LS +AN+ P  D NQSPRNM
Sbjct: 666 PLDKLDYVGPFEQPFMEIACLPSDLVAGISTHIEFTPTNILSIVANMTPFSDYNQSPRNM 725

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQCQM KQTMGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+I
Sbjct: 726 YQCQMSKQTMGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAII 785

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           SYTGYDM+DAMI+NKSS+ERGF HG I+K+    L+            S  + S  +   
Sbjct: 786 SYTGYDMDDAMIINKSSHERGFGHGTIYKTKVHSLDE---------KESRRNKSRREITK 836

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY-- 848
            FG      +R     +W+               + +  DGL ++GA++ E   + +Y  
Sbjct: 837 LFGFAPGGEIRA----EWR---------------NTIDEDGLPHIGARVKEGSLVAAYHN 877

Query: 849 --WKESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
             +  + + YV         +Y   EE  ++ +R+     E G        + YRI R P
Sbjct: 878 VRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGA--ETGIEPCQSLSVKYRIPRKP 935

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +GDKF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 936 VIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1071


>gi|391863557|gb|EIT72865.1| RNA polymerase I, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1237

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 352/1009 (34%), Positives = 521/1009 (51%), Gaps = 161/1009 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF------------- 96
           F  PP  +  +  L     PH+ SF+ + ++   L   ++DI    F             
Sbjct: 23  FKNPPKDRTAYPALAASIKPHVDSFNALFEDSKILQAGLKDIGTKTFIDGEAETPEQKKA 82

Query: 97  -EIYGKT------LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPFNVT 148
            +  G+       L + I +  + +P +P        N+  YP+E R+  + Y G     
Sbjct: 83  RQAEGRKAPKRNKLHVRIKEVFLEKPAIPPTNKFTTRNRNIYPSECRERHATYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G+VPIM+++ RCHL   TPA+L+E  E  +E GGYFIV G+EK
Sbjct: 143 IEYRVNNGDWMEAVRELGQVPIMMRTNRCHLEKATPAELVEHKEESEELGGYFIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+LI  +RN P+AI R ++  RG  ++  GV IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLIVGKRNFPMAIVRGSFVKRGHTYTKFGVQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKSMCLL-------------------GMMQSLHEEGI-------------------- 289
           FS RK+  L+                   G++ S   EGI                    
Sbjct: 263 FSWRKNEYLVPVMMILKALVETNDREIFEGLVGSASSEGINNTFVTDRVELLLRTYKGYN 322

Query: 290 -HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            H++   + + G+ FK  L   +   NE E     L   +LPHL +        +DKF  
Sbjct: 323 LHSRSACRAYLGEKFKPVLGVPMDMSNE-EAGTEFLRKVVLPHLGNQNVTETQDYDKFKL 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------------ 383
           +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK+                  
Sbjct: 382 IMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFGPILRDWSM 441

Query: 384 ------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                       E+   S V+K S+        +I  A+  FL+TGN+ +   + L L Q
Sbjct: 442 RNHGAKFTDPSFERDFLSKVVKRSN-------ENIGGALEYFLSTGNLVS--PTGLDLQQ 492

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
            SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCG
Sbjct: 493 TSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCG 552

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           LLNHL   C IS       ++ +P +LV LG   +        E+++ V LDGRIVG+  
Sbjct: 553 LLNHLAHKCLIS--TSDIDVSHLPRLLVQLG---VRSESSVSLEESVTVQLDGRIVGFCS 607

Query: 552 DQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
            + A  +   LR  K+ G   +P+ LEI Y+  P    G YPG+Y+F+   RM R V  L
Sbjct: 608 PKQARMIADTLRHWKVEGSHNVPRELEIGYV--PNSNGGQYPGIYMFSQAARMYREVKYL 665

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
               ++++G FEQ FM+I     +   GI+TH E + T+ LS +AN+ P  D NQSPRNM
Sbjct: 666 PLDKLDYVGPFEQPFMEIACLPSDLVAGISTHIEFTPTNILSIVANMTPFSDYNQSPRNM 725

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQCQM KQTMGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+I
Sbjct: 726 YQCQMSKQTMGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAII 785

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           SYTGYDM+DAMI+NKSS+ERGF HG I+K+    L+            S  + S  +   
Sbjct: 786 SYTGYDMDDAMIINKSSHERGFGHGTIYKTKVHSLDE---------KESRRNKSRREITK 836

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY-- 848
            FG      +R     +W+               + +  DGL ++GA++ E   + +Y  
Sbjct: 837 LFGFAPGGEIRA----EWR---------------NTIDEDGLPHIGARVKEGSLVAAYHN 877

Query: 849 --WKESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
             +  + + YV         +Y   EE  ++ +R+     E G        + YRI R P
Sbjct: 878 VRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGA--ETGIEPCQSLSVKYRIPRKP 935

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
            +GDKF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI
Sbjct: 936 VIGDKFSSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTI 984



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1071


>gi|303312029|ref|XP_003066026.1| DNA-directed RNA polymerase I polypeptide 2 , putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240105688|gb|EER23881.1| DNA-directed RNA polymerase I polypeptide 2 , putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1243

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/1008 (35%), Positives = 527/1008 (52%), Gaps = 146/1008 (14%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     + +   A  PHI SF+ + D+   ++ A++DI    F          
Sbjct: 19  ERLFRHPPKDHTAYPMLAAAVRPHIDSFNALFDDSKVMEAALKDIGTKTFLDGVPETPEL 78

Query: 97  ----EIYGKT------LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPF 145
                  GK       L + + +  + +  +PA       N+   P E R+  + Y G  
Sbjct: 79  RRQRREEGKRAPRRNRLSVRVTELFLEKAVLPASNKFTTRNREILPAECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML++ RCHL  LTP QL+ER E  +E GGYFIV G
Sbjct: 139 RARLEFRVNNGDWKESVRELGQVPIMLRTNRCHLEKLTPYQLVERKEESEELGGYFIVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI +RRN P+AI R ++  RG  ++  GV IRSV+ D+++  NVLH++++G+ 
Sbjct: 199 NEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQTSQTNVLHYLSDGNV 258

Query: 266 RFMFSHRKS-------MCLLGMMQSLHEE------------------------------- 287
            F FS RK+       M L  ++++   E                               
Sbjct: 259 TFRFSWRKNEYLVPVVMILKALIETNDREIFERLVGREGSLGINNTFVTDRMELLLRTYK 318

Query: 288 --GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
             G+H++   + + G+ F+  L     ++++ ++    L   +LPHL +         DK
Sbjct: 319 AYGVHSKSKCRAYLGEKFRYVLGM-ADNVSDEDVGTEFLRKIVLPHLGNQNVTEPQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-------------- 384
           F  +  M  KL+ +V G    D+ D++  QE++ GG LY  +LK+               
Sbjct: 378 FNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYGMILKERLEEWLRSIGPLARD 437

Query: 385 --KSGTSAVLK----ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGF 435
                  A+      E D      A + E+   A+  FL+TGN+ +   + L L Q SG+
Sbjct: 438 WSNRNLGALFTDPKFEKDFLGRIVARTNENLGGALEYFLSTGNLVS--PTGLDLQQPSGY 495

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            I+AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH
Sbjct: 496 TIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 555

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L   C I+    +  ++ IP +L +LG+   +        +++ V+LDGRIVGY   + A
Sbjct: 556 LAHKCLIA--TSNLDVSGIPEILSTLGVGSESSSSLE---ESVAVLLDGRIVGYCAPKQA 610

Query: 556 TSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
             +   LR  K+ G  KIP  LEI Y+  P    G YPG+Y+F+   RM RPV  L    
Sbjct: 611 RVIADTLRHWKVEGHPKIPTELEIGYV--PNSNGGQYPGVYIFSQCARMYRPVKYLPLDK 668

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           ++++G FEQ FM+I     E   G++TH E   T  LS LAN+ P  D NQSPRNMYQCQ
Sbjct: 669 LDYVGPFEQPFMEIACVQSEITSGLSTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQ 728

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ MGTP  +  Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VAVISYTG
Sbjct: 729 MGKQAMGTPGTSIAYRTDNKLYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTG 788

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDM+DAMI+NKS++ERGF +G I+K+    L+        +    G   S  +    FG 
Sbjct: 789 YDMDDAMIINKSAHERGFGYGTIYKTKIYALD--------DKEARGRGKSRREITKLFGF 840

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WK 850
                   +V  +W+               + LG DGL +VGAK+ E D + ++    + 
Sbjct: 841 AP----GGLVKAEWR---------------NHLGEDGLPHVGAKVAEGDIIAAWHTVQYD 881

Query: 851 ESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
            +   Y+         +Y   EE  ++ +R+     E G+       I YRI R P +GD
Sbjct: 882 PAAETYLNVDKETHFLKYKDSEEGYIDSIRILGA--ETGNEACQAVSIKYRIPRKPVIGD 939

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 940 KFSSRHGQKGVCSQLWPAVDMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSGV G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGVTGREFAADIYIGVVYYQRLRHMVNDKFQVR 1071


>gi|398396774|ref|XP_003851845.1| DNA-directed RNA polymerase I subunit RPA135 [Zymoseptoria tritici
           IPO323]
 gi|339471725|gb|EGP86821.1| hypothetical protein MYCGRDRAFT_73125 [Zymoseptoria tritici IPO323]
          Length = 1213

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 357/996 (35%), Positives = 529/996 (53%), Gaps = 137/996 (13%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF--------EIYGK 101
           F  PP K+  +  L     PH+ SF+ +  E   L  A++DI    F        E  G+
Sbjct: 26  FRNPPSKKTAYPELAEAIRPHVDSFNTVFAENGQLQHALKDIGTKTFLDGNGQQNEEGGR 85

Query: 102 T--LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
              L++ + +  + +P++P+        +  P E R+    Y G F        +G    
Sbjct: 86  RNRLQVRVKEVFLEKPQLPSSNKLEGRREILPVECRERHVTYRGRFRGRFEHRVNGGEWK 145

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
              ++ G +P+ML+S RCHL  L+P  L+ + E  +E GGYFIV G EKLVR+LI NRRN
Sbjct: 146 ETVRDFGNLPVMLRSNRCHLEGLSPRDLVNKREETEELGGYFIVNGIEKLVRMLIVNRRN 205

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL-- 277
           +P+AI R +++ RG  ++  G+ IRSV+ D+++  NVLH++++G+  F FS RK+  L  
Sbjct: 206 YPMAIIRPSFEGRGATYTKYGIQIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEFLVP 265

Query: 278 -LGMMQSLHE-------EGI-------------------------------HTQHDSKVF 298
            L ++++L E       EGI                               H +  ++ +
Sbjct: 266 VLMVLKALTETNDREIFEGIVGPASSKGLDSKQFVTDRVELLLRTYKAYNLHGRSKTRAY 325

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DKFLCLSHMTCKLFH 351
            G  F+  L       +E    ++ L   ++PHL  Y        DKF  L  M  KL+ 
Sbjct: 326 LGSKFRVVLGVPEDLSDEAAGTEF-LRKIVMPHLGSYEVTEANDSDKFRMLIFMIRKLYS 384

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--EKSGTSAVLK-----ESDIYAAFRAS 404
           +V+G   +D+ D++  QEI+  G+LY  ++K+  E+  TS  L       S+ + +F + 
Sbjct: 385 LVEGECTIDNPDAVQNQEILLPGALYGMIIKERIEEWLTSIGLSLREWGRSNNWPSFNSR 444

Query: 405 SIE----------------SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
             +                 A+  FL+TGN+ +   + L L Q SGF ++AE IN  R++
Sbjct: 445 DFDKDFMPKIIRKTNENLGQALDYFLSTGNLVS--PTGLDLQQVSGFTVVAEKINFFRFI 502

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
           +HFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+    S
Sbjct: 503 AHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIA--TES 560

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
              + +P ++  +G   +  V  +  E ++ + LDGRI+G+   + A  +   LR  K+ 
Sbjct: 561 IDASGVPGLISQMG---VASVSDATLEDSVSIQLDGRILGFCSPKQAKLIADTLRYWKVE 617

Query: 569 GEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMD 627
           G + +P  LEI Y+  P    G YPG+Y+F+   RM RPV  L    ++++G FEQ FM 
Sbjct: 618 GNQGVPTELEIGYV--PLSIGGQYPGVYMFSQAARMYRPVKYLPLEKLDYVGPFEQPFMS 675

Query: 628 ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           I  T  E   G +TH E   T+ LS +AN  P  + NQSPRNMYQCQMGKQTMGTP    
Sbjct: 676 IACTEPEVTSGDSTHVEFDVTNILSIIANQTPFSNQNQSPRNMYQCQMGKQTMGTPGTAL 735

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
           +Y+   K YRLQT  +P  R   ++   +DNFP GTNA+VAVISYTGYDM+DAMI+NKS+
Sbjct: 736 KYRTDNKSYRLQTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMIINKSA 795

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
           +ERGF +G I+K+  I+L +      ++    G  G++      FG         +V   
Sbjct: 796 HERGFGYGTIYKAKKIDLAA-----ESKATRGGRGGAITN---MFGFAPGA----VVKSS 843

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN----RYVTC---- 859
           W+               + L  DGL  VG KL E DP+ S +   ++     YV      
Sbjct: 844 WR---------------ETLDDDGLGRVGVKLQEGDPVASTYSVVKDPLTGEYVNKDGIS 888

Query: 860 ---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY-IGYRIQRNPTVGDKFASRAGQKGIC 915
              RY   E   +E ++M     E G+  P  A  I YRI R+P +GDKF+SR GQKG+C
Sbjct: 889 HIHRYKDTEAGYIEEIKMIG--NEAGTSDPCQAISIRYRIPRSPVIGDKFSSRHGQKGVC 946

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           S KWP  D+PFT+SG+ PD++ NPH FPSRMTIG  
Sbjct: 947 SQKWPTIDMPFTESGMQPDVIINPHAFPSRMTIGMF 982



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYG E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +      P        
Sbjct: 1024 AGYNYYGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKFQVRTTGPVTPLTGQPIKG 1083

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                G + VG    ERD + ++      ++R + C    K  +C
Sbjct: 1084 RAKGGGIRVGEM--ERDALLAHGTAFLLQDRLMNCSDYTKASIC 1125


>gi|119193490|ref|XP_001247351.1| DNA-directed RNA polymerase I [Coccidioides immitis RS]
 gi|392863403|gb|EAS35848.2| DNA-directed RNA polymerase I [Coccidioides immitis RS]
          Length = 1243

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/1008 (35%), Positives = 527/1008 (52%), Gaps = 146/1008 (14%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     + +   A  PHI SF+ + D+   ++ A++DI    F          
Sbjct: 19  ERLFRHPPKDHTAYPMLAAAVRPHIDSFNALFDDSKVMEAALKDIGTKTFLDGVPETPEL 78

Query: 97  ----EIYGKT------LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPF 145
                  GK       L + + +  + +  +PA       N+   P E R+  + Y G  
Sbjct: 79  RRQRREEGKRAPRRNRLSVRVTELFLEKAVLPASNKFTTRNREILPAECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML++ RCHL  LTP QL+ER E  +E GGYFIV G
Sbjct: 139 RARLEFRVNNGDWKESVRELGQVPIMLRTNRCHLEKLTPYQLVERKEESEELGGYFIVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI +RRN P+AI R ++  RG  ++  GV IRSV+ D+++  NVLH++++G+ 
Sbjct: 199 NEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQTSQTNVLHYLSDGNV 258

Query: 266 RFMFSHRKS-------MCLLGMMQSLHEE------------------------------- 287
            F FS RK+       M L  ++++   E                               
Sbjct: 259 TFRFSWRKNEYLVPVVMILKALIETNDREIFERLVGREGSLGINNTFVTDRMELLLRTYK 318

Query: 288 --GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
             G+H++   + + G+ F+  L     ++++ ++    L   +LPHL +         DK
Sbjct: 319 AYGVHSKSKCRAYLGEKFRYVLGM-ADNVSDEDVGTEFLRKIVLPHLGNQNVTEPQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-------------- 384
           F  +  M  KL+ +V G    D+ D++  QE++ GG LY  +LK+               
Sbjct: 378 FNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYGMILKERLEEWLRSIGPLARD 437

Query: 385 --KSGTSAVLK----ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGF 435
                  A+      E D      A + E+   A+  FL+TGN+ +   + L L Q SG+
Sbjct: 438 WSNRNLGALFTDPKFEKDFLGRIVARTNENLGGALEYFLSTGNLVS--PTGLDLQQPSGY 495

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            I+AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH
Sbjct: 496 TIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 555

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L   C I+    +  ++ IP +L +LG+   +        +++ V+LDGRIVGY   + A
Sbjct: 556 LAHKCLIA--TSNLDVSGIPEILSTLGVGSESSSSLE---ESVAVLLDGRIVGYCAPKQA 610

Query: 556 TSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
             +   LR  K+ G  KIP  LEI Y+  P    G YPG+Y+F+   RM RPV  L    
Sbjct: 611 RVIADTLRHWKVEGHPKIPTELEIGYV--PNSNGGQYPGVYIFSQCARMYRPVKYLPLDK 668

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           ++++G FEQ FM+I     E   G++TH E   T  LS LAN+ P  D NQSPRNMYQCQ
Sbjct: 669 LDYVGPFEQPFMEIACVPSEITSGLSTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQ 728

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ MGTP  +  Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VAVISYTG
Sbjct: 729 MGKQAMGTPGTSIAYRTDNKLYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTG 788

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDM+DAMI+NKS++ERGF +G I+K+    L+        +    G   S  +    FG 
Sbjct: 789 YDMDDAMIINKSAHERGFGYGTIYKTKIYALD--------DKEARGRGKSRREITKLFGF 840

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WK 850
                   +V  +W+               + LG DGL +VGAK+ E D + ++    + 
Sbjct: 841 AP----GGLVKAEWR---------------NHLGEDGLPHVGAKVAEGDIIAAWHTVQYD 881

Query: 851 ESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
            +   Y+         +Y   EE  ++ +R+     E G+       I YRI R P +GD
Sbjct: 882 PAAETYLNVDKETHFLKYKDSEEGYIDSIRILGA--ETGNEACQAVSIKYRIPRKPVIGD 939

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 940 KFSSRHGQKGVCSQLWPAVDMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSGV G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGVTGREFAADIYIGVVYYQRLRHMVNDKFQVR 1071


>gi|320040000|gb|EFW21934.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str.
           Silveira]
          Length = 1243

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 355/1008 (35%), Positives = 527/1008 (52%), Gaps = 146/1008 (14%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     + +   A  PHI SF+ + D+   ++ A++DI    F          
Sbjct: 19  ERLFRHPPKDHTAYPMLAAAVRPHIDSFNALFDDSKVMEAALKDIGTKTFLDGVPETPEL 78

Query: 97  ----EIYGKT------LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPF 145
                  GK       L + + +  + +  +PA       N+   P E R+  + Y G  
Sbjct: 79  RRQRREEGKRAPRRNRLSVRVTELFLEKAVLPASNKFTTRNREILPAECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML++ RCHL  LTP QL+ER E  +E GGYFIV G
Sbjct: 139 RARLEFRVNNGDWKESVRELGQVPIMLRTNRCHLEKLTPYQLVERKEESEELGGYFIVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI +RRN P+AI R ++  RG  ++  GV IRSV+ D+++  NVLH++++G+ 
Sbjct: 199 NEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQTSQTNVLHYLSDGNV 258

Query: 266 RFMFSHRKS-------MCLLGMMQSLHEE------------------------------- 287
            F FS RK+       M L  ++++   E                               
Sbjct: 259 TFRFSWRKNEYLVPVVMILKALIETNDREIFERLIGREGSLGINNTFVTDRMELLLRTYK 318

Query: 288 --GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
             G+H++   + + G+ F+  L     ++++ ++    L   +LPHL +         DK
Sbjct: 319 AYGVHSKSKCRAYLGEKFRYVLGM-ADNVSDEDVGTEFLRKIVLPHLGNQNVTEPQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-------------- 384
           F  +  M  KL+ +V G    D+ D++  QE++ GG LY  +LK+               
Sbjct: 378 FNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYGMILKERLEEWLRSIGPLARD 437

Query: 385 --KSGTSAVLK----ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGF 435
                  A+      E D      A + E+   A+  FL+TGN+ +   + L L Q SG+
Sbjct: 438 WSNRNLGALFTDPKFEKDFLGRIVARTNENLGGALEYFLSTGNLVS--PTGLDLQQPSGY 495

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            I+AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH
Sbjct: 496 TIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 555

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L   C I+    +  ++ IP +L +LG+   +        +++ V+LDGRIVGY   + A
Sbjct: 556 LAHKCLIA--TSNLDVSGIPEILSTLGVGSESSSSLE---ESVAVLLDGRIVGYCAPKQA 610

Query: 556 TSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
             +   LR  K+ G  KIP  LEI Y+  P    G YPG+Y+F+   RM RPV  L    
Sbjct: 611 RVIADTLRHWKVEGHPKIPTELEIGYV--PNSNGGQYPGVYIFSQCARMYRPVKYLPLDK 668

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           ++++G FEQ FM+I     E   G++TH E   T  LS LAN+ P  D NQSPRNMYQCQ
Sbjct: 669 LDYVGPFEQPFMEIACVPSEITSGLSTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQ 728

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ MGTP  +  Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VAVISYTG
Sbjct: 729 MGKQAMGTPGTSIAYRTDNKLYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTG 788

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDM+DAMI+NKS++ERGF +G I+K+    L+        +    G   S  +    FG 
Sbjct: 789 YDMDDAMIINKSAHERGFGYGTIYKTKIYALD--------DKEARGRGKSRREITKLFGF 840

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WK 850
                   +V  +W+               + LG DGL +VGAK+ E D + ++    + 
Sbjct: 841 AP----GGLVKAEWR---------------NHLGEDGLPHVGAKVAEGDIIAAWHTVQYD 881

Query: 851 ESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
            +   Y+         +Y   EE  ++ +R+     E G+       I YRI R P +GD
Sbjct: 882 PAAETYLNVDKETHFLKYKDSEEGYIDSIRILGA--ETGNEACQAVSIKYRIPRKPVIGD 939

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 940 KFSSRHGQKGVCSQLWPAVDMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSGV G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGVTGREFAADIYIGVVYYQRLRHMVNDKFQVR 1071


>gi|119469451|ref|XP_001257945.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Neosartorya fischeri NRRL 181]
 gi|119406097|gb|EAW16048.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Neosartorya fischeri NRRL 181]
          Length = 1232

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 349/1004 (34%), Positives = 522/1004 (51%), Gaps = 149/1004 (14%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEF------------- 96
           F  PP     F     A  PH+ SF+ + +    L+  ++DI    F             
Sbjct: 23  FKNPPKDHTAFPSLAAAIRPHLDSFNALFEGSKVLEAGLKDIGIKTFLDGDAETPEEKRA 82

Query: 97  -EIYGKT------LKLNIVKAAISEPKVPA-GPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            +  G+       L + I +  + +P +PA           YP+EAR+  + Y G     
Sbjct: 83  RKAEGRRPPKRNRLNVRIREIFLEKPAIPATNKFATRNRNIYPSEARERHATYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G+VPIML++ RCHL   TP +L++  E  +E GGYFIV G+EK
Sbjct: 143 LEYQVNNGDWMESIRELGQVPIMLRTNRCHLEKATPQELVQHKEESEELGGYFIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+L+  +RN+P+AI R ++  RG  ++  G+ IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLVVGKRNYPMAIVRGSFVRRGHTYTKFGIQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKS-------MCLLGMMQSLHEE---------------------------------G 288
           FS RK+       M + G++++   E                                  
Sbjct: 263 FSWRKNEYLIPVMMIMKGLVETNDREIFEGIVGSATSKGVNNTFVTDRVELLLRTYKAYN 322

Query: 289 IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
           +HT+   + + G+ FK  L       NE    ++ L   +LPHL +        +DKF  
Sbjct: 323 LHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEF-LRKIVLPHLGNQNVTETQDYDKFKL 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------- 384
           +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK++                 
Sbjct: 382 IMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKEQLEEWMRSFGPILRDWSN 441

Query: 385 KSGTSAVLK---ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
           ++G +       E D  +     + E+    +  FL+TGN+ +   + L L Q SG+ +M
Sbjct: 442 RNGGAKFTDPAFERDFLSKIVKRTNENIGGKLEYFLSTGNLVS--PTGLDLQQVSGYTVM 499

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL  
Sbjct: 500 AEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAH 559

Query: 499 NCQISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
            C I+    S V ++ +P +LV LG+   + V     E ++ V LDGRIVGY   + A  
Sbjct: 560 KCLIAT---SDVNVSHLPKLLVQLGVRSESSVAL---EDSVTVQLDGRIVGYCSPKQARM 613

Query: 558 LVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIE 616
           +   +R  K+ G   IP+ LEI Y+  P    G YPG+Y+F+   RM RPV  L    ++
Sbjct: 614 IADTVRHWKVSGTHNIPRELEIGYV--PNSNGGQYPGVYMFSQAARMYRPVKYLPLDKLD 671

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           ++G FEQ FM+I     +   G++TH E + T+ LS +AN+ P  D NQSPRNMYQCQM 
Sbjct: 672 YVGPFEQPFMEIACLPDDLVAGVSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMS 731

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQTMGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+ISYTGYD
Sbjct: 732 KQTMGTPGTAIEYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYD 791

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           M+DAMI+NKSS+ERGF +G I+K+    L+            S    S  +    FG   
Sbjct: 792 MDDAMIINKSSHERGFGYGTIYKTKIHSLDD---------KDSRRSKSRREITKLFGFAP 842

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WKES 852
              +R     +W+T                L  DGL +VGA++ E   + ++    +  +
Sbjct: 843 GGEIRA----EWRTT---------------LDEDGLPHVGARVKEGSLIAAWHTVRYDAA 883

Query: 853 ENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
            + YV         +Y   EE  ++ +R+     E G        + YRI R P +GDKF
Sbjct: 884 SDSYVNVDGITHFVKYKDAEEGYIDSIRIMGA--ETGLEPCQALSVKYRIPRKPVIGDKF 941

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 942 SSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E +YSGV G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYYGNEPLYSGVTGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1071


>gi|70991741|ref|XP_750719.1| DNA-directed RNA polymerase I subunit beta (Rpa2) [Aspergillus
           fumigatus Af293]
 gi|66848352|gb|EAL88681.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Aspergillus fumigatus Af293]
          Length = 1235

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 352/1004 (35%), Positives = 525/1004 (52%), Gaps = 149/1004 (14%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLD--EGLDLAVEDIAPIEF------------- 96
           F  PP     F     A  PH+ SF+ + +  + ++  ++DI    F             
Sbjct: 23  FKNPPKDHTAFPSLAAAIRPHLDSFNALFEGSKVIEAGLKDIGIKTFLDGDAETPEERRA 82

Query: 97  -EIYGKT------LKLNIVKAAISEPKVPA-GPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            +  G+       L + I +  + +P +PA           YP+EAR+  + Y G     
Sbjct: 83  RKAEGRRPPKRNRLNVRIREIFLEKPAIPATNKFATRNRNIYPSEARERHATYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G+VPIML++ RCHL   TP +L++  E  +E GGYFIV G+EK
Sbjct: 143 LEYQVNNGDWMESIRELGQVPIMLRTNRCHLEKATPQELVQHKEESEELGGYFIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+L+  +RN P+AI R+++  RG  ++  G+ IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLVVGKRNFPMAIVRSSFVRRGHTYTKFGIQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKSMCLLG---MMQSLHE-------EGI----------------------------- 289
           FS RK+  L+    +M++L E       EGI                             
Sbjct: 263 FSWRKNEYLIPVMMIMKALVETNDREIFEGIVGSATSKGVNNTFVTDRVELLLRTYKAYN 322

Query: 290 -HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            HT+   + + G+ FK  L       NE    ++ L   +LPHL +        +DKF  
Sbjct: 323 LHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEF-LRKIVLPHLGNQNVTEIQDYDKFKL 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------- 384
           +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK++                 
Sbjct: 382 IMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKEQLEEWMRSFGPILRDWSN 441

Query: 385 KSGTSAVLK---ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
           ++G +       E D  +     + E+    +  FL+TGN+ +   + L L Q SG+ +M
Sbjct: 442 RNGGAKFTDPAFERDFLSKIVKRTNENIGGKLEYFLSTGNLVS--PTGLDLQQVSGYTVM 499

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL  
Sbjct: 500 AEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAH 559

Query: 499 NCQISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
            C I+    S V ++ +P +LV LG+   + V     E ++ V LDGRIVGY   + A  
Sbjct: 560 KCLIAT---SDVNVSHLPKLLVQLGVRSESSVAL---EDSVTVQLDGRIVGYCSPKQARM 613

Query: 558 LVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIE 616
           +   +R  K+ G   IP+ LEI Y+  P    G YPG+Y+F+   RM RPV  L    ++
Sbjct: 614 IADTVRHWKVSGTHNIPRELEIGYV--PNSNGGQYPGIYMFSQAARMYRPVKYLPLDKLD 671

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           ++G FEQ FM+I     +   G++TH E + T+ LS +AN+ P  D NQSPRNMYQCQM 
Sbjct: 672 YVGPFEQPFMEIACLPDDLVAGVSTHIEYTPTNILSIVANMTPFSDYNQSPRNMYQCQMS 731

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQTMGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+ISYTGYD
Sbjct: 732 KQTMGTPSTAIEYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYD 791

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           M+DAMI+NKSS+ERGF +G I+K+    L+            S    S  +    FG   
Sbjct: 792 MDDAMIINKSSHERGFGYGTIYKTKIHSLDD---------KDSRRSKSRREITKLFGFAP 842

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WKES 852
              +R     +W+T                L  DGL +VGA++ E   + ++    +  +
Sbjct: 843 GGEIRA----EWRTT---------------LDEDGLPHVGARVKEGSLIAAWHTVRYDAA 883

Query: 853 ENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
            + YV         +Y   EE  ++ +R+     E G        + YRI R P +GDKF
Sbjct: 884 SDSYVNVDGITHFVKYKDAEEGYIDSIRIMGA--ETGLEPCQALSVKYRIPRKPVIGDKF 941

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 942 SSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1071


>gi|159124281|gb|EDP49399.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Aspergillus fumigatus A1163]
          Length = 1235

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 352/1004 (35%), Positives = 525/1004 (52%), Gaps = 149/1004 (14%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLD--EGLDLAVEDIAPIEF------------- 96
           F  PP     F     A  PH+ SF+ + +  + ++  ++DI    F             
Sbjct: 23  FKNPPKDHTAFPSLAAAIRPHLDSFNALFEGSKVIEAGLKDIGIKTFLDGDAETPEERRA 82

Query: 97  -EIYGKT------LKLNIVKAAISEPKVPA-GPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
            +  G+       L + I +  + +P +PA           YP+EAR+  + Y G     
Sbjct: 83  RKAEGRRPPKRNRLNVRIREIFLEKPAIPATNKFATRNRNIYPSEARERHATYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G+VPIML++ RCHL   TP +L++  E  +E GGYFIV G+EK
Sbjct: 143 LEYQVNNGDWMESIRELGQVPIMLRTNRCHLEKATPQELVQHKEESEELGGYFIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+L+  +RN P+AI R+++  RG  ++  G+ IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLVVGKRNFPMAIVRSSFVRRGHTYTKFGIQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKSMCLLG---MMQSLHE-------EGI----------------------------- 289
           FS RK+  L+    +M++L E       EGI                             
Sbjct: 263 FSWRKNEYLIPVMMIMKALVETNDREIFEGIVGSATSKGVNNTFVTDRVELLLRTYKAYN 322

Query: 290 -HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            HT+   + + G+ FK  L       NE    ++ L   +LPHL +        +DKF  
Sbjct: 323 LHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEF-LRKIVLPHLGNQNVTEIQDYDKFKL 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------- 384
           +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK++                 
Sbjct: 382 IMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKEQLEEWMRSFGPILRDWSN 441

Query: 385 KSGTSAVLK---ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
           ++G +       E D  +     + E+    +  FL+TGN+ +   + L L Q SG+ +M
Sbjct: 442 RNGGAKFTDPAFERDFLSKIVKRTNENIGGKLEYFLSTGNLVS--PTGLDLQQVSGYTVM 499

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL  
Sbjct: 500 AEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAH 559

Query: 499 NCQISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
            C I+    S V ++ +P +LV LG+   + V     E ++ V LDGRIVGY   + A  
Sbjct: 560 KCLIAT---SDVNVSHLPKLLVQLGVRSESSVAL---EDSVTVQLDGRIVGYCSPKQARM 613

Query: 558 LVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIE 616
           +   +R  K+ G   IP+ LEI Y+  P    G YPG+Y+F+   RM RPV  L    ++
Sbjct: 614 IADTVRHWKVSGTHNIPRELEIGYV--PNSNGGQYPGIYMFSQAARMYRPVKYLPLDKLD 671

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           ++G FEQ FM+I     +   G++TH E + T+ LS +AN+ P  D NQSPRNMYQCQM 
Sbjct: 672 YVGPFEQPFMEIACLPDDLVAGVSTHIEYTPTNILSIVANMTPFSDYNQSPRNMYQCQMS 731

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQTMGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA+ISYTGYD
Sbjct: 732 KQTMGTPGTAIEYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYD 791

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           M+DAMI+NKSS+ERGF +G I+K+    L+            S    S  +    FG   
Sbjct: 792 MDDAMIINKSSHERGFGYGTIYKTKIHSLDD---------KDSRRSKSRREITKLFGFAP 842

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WKES 852
              +R     +W+T                L  DGL +VGA++ E   + ++    +  +
Sbjct: 843 GGEIRA----EWRTT---------------LDEDGLPHVGARVKEGSLIAAWHTVRYDAA 883

Query: 853 ENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
            + YV         +Y   EE  ++ +R+     E G        + YRI R P +GDKF
Sbjct: 884 SDSYVNVDGITHFVKYKDAEEGYIDSIRIMGA--ETGLEPCQALSVKYRIPRKPVIGDKF 941

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 942 SSRHGQKGVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTIA 985



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1071


>gi|302660181|ref|XP_003021772.1| hypothetical protein TRV_04103 [Trichophyton verrucosum HKI 0517]
 gi|291185687|gb|EFE41154.1| hypothetical protein TRV_04103 [Trichophyton verrucosum HKI 0517]
          Length = 1243

 Score =  564 bits (1453), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 354/1021 (34%), Positives = 524/1021 (51%), Gaps = 172/1021 (16%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEFEIYGKT---- 102
           ++ F  PP  +  +     A  PHI SF+ + ++   L+ A++DI    F I G +    
Sbjct: 19  ERLFRHPPKDKTAYPALAAAIRPHIDSFNALFEDTKVLEAALKDIGIKSF-IDGSSETPE 77

Query: 103 -----------------LKLNIVKAAISEPKVPAGPVGIHFNKY-------YPTEARQTR 138
                            L + I +  + +  +PA       NKY       YP E R+  
Sbjct: 78  EKASRREDGRRAPKRNKLSVRITELFLEKAVLPAS------NKYSTRNREIYPAECRERH 131

Query: 139 SVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWG 198
           + Y G     + +  +        +E+G+VPIM++S RCHL   TP+QL++  E  +E G
Sbjct: 132 ATYRGRLRARLEYRINNGEWKESVRELGQVPIMIRSNRCHLEKATPSQLVDHKEESEELG 191

Query: 199 GYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLH 258
           GYFIV G+EKL+R+LI  +RN P AI RN+++ RG  ++  GV +RSV+ D+++  NVLH
Sbjct: 192 GYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPDQTSQTNVLH 251

Query: 259 FVTNGSARFMFSHRKS-------MCLLGMMQSLHEE------------------------ 287
           ++ +G+  F FS RK+       M L  ++++   E                        
Sbjct: 252 YLNDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIFERLVGREGSLGIENTFVTDRVE 311

Query: 288 ---------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-- 336
                    G+H++   + + G  F+  L      + E ++   +L   +LPHL +    
Sbjct: 312 LLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMP-EDIPEEDVGTELLRKIVLPHLGNQNVT 370

Query: 337 -----DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KS 386
                DKF  +  M  KL+++V G    D+ D++  QE++ GG LY  LLK+      KS
Sbjct: 371 ETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYLYGMLLKERLEEWLKS 430

Query: 387 -----------GTSAVLKESDIYAAFRA-------SSIESAMTNFLATGNVSAGKNSTLQ 428
                         A   +      F          +I  AM  FL+TGN+ +   + L 
Sbjct: 431 VGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRTNENIGGAMEYFLSTGNLVS--PTGLD 488

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 489 LQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 548

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNHL   C IS    +  ++ IP VL  LG   +T       E+++ V LDG+I+G
Sbjct: 549 PCGLLNHLAHKCLIS--TSNLDVSGIPGVLAGLG---VTSESSCSIEESIPVQLDGKILG 603

Query: 549 YILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           Y   + + ++   LR  K+ G K IP  LEI Y+  P    G YPG+Y+F+   RM RPV
Sbjct: 604 YCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYV--PSSNGGQYPGVYMFSEAARMYRPV 661

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L    ++++G FEQ +M+I     +   G++TH E   T  LS LAN+ P  D NQSP
Sbjct: 662 KYLPLDKLDYVGPFEQPYMEIACVASDIRNGVSTHIEFDPTHILSILANMTPFSDFNQSP 721

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQMGKQ MGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+V
Sbjct: 722 RNMYQCQMGKQAMGTPGTAIDYRTDNKLYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVV 781

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES------GYNYYGTETMYSGV 781
           AVISYTGYDM+DAMI+NKSS+ERGF +G I+K+    L+       G +   T  ++   
Sbjct: 782 AVISYTGYDMDDAMIINKSSHERGFGYGTIYKTKIYALDDKESRGRGKSKRATTKLFGFA 841

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
            G +++A+                  W+ +               L  DGL ++GAK++E
Sbjct: 842 PGGLVKAE------------------WKAQ---------------LDEDGLPHIGAKVSE 868

Query: 842 -----------RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
                       DP    +   + +    +Y   EE  ++ VR+    +E G+       
Sbjct: 869 GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLG--SETGNEVCQAVS 926

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
           I YR+ R P +GDKF+SR GQKG+ S  WPA D+PF++SG+ PD++ NPH FPSRMTIG 
Sbjct: 927 IKYRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFSESGIQPDVIINPHAFPSRMTIGM 986

Query: 951 L 951
            
Sbjct: 987 F 987



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1027 AGYNFHGNEPMYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVR 1071


>gi|406867542|gb|EKD20580.1| RNA polymerase Rpb2 [Marssonina brunnea f. sp. 'multigermtubi'
           MB_m1]
          Length = 1209

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 355/1004 (35%), Positives = 529/1004 (52%), Gaps = 159/1004 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY----------GK 101
           F  PP   + +  L    APHI SF+ +  E   +A + +  I  ++Y          GK
Sbjct: 29  FRNPPQDHSAYPALKDAVAPHIESFNALFGENGTIA-QGLLDIGEKVYFDGDDREGPAGK 87

Query: 102 -TLKLNIVKAAISEPKVPAGPVGIHFNKY-------YPTEARQTRSVYSGPFNVTVAWSW 153
            +L L  V+  +S P +P        NKY        P+E R+    Y     V   +  
Sbjct: 88  NSLSLRAVQFFLSRPMLPP------HNKYSTRNREILPSECRERHVTYRADMAVQFEFRI 141

Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
           +     TF +  G++P+M+   RCHL N TPAQL+ER E  +E GGYF+V G EK++RLL
Sbjct: 142 NNGDPQTFVRGFGKLPLMVMGTRCHLENNTPAQLVERKEEAEELGGYFVVNGIEKIIRLL 201

Query: 214 INNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK 273
           + NRRN P+AI+R +++NRG  ++  G+ +RSV+ D+++  NVLH++ +G+  F FS RK
Sbjct: 202 LVNRRNFPMAIERPSFRNRGKEYTKYGMLMRSVRPDQTSQTNVLHYLNDGNVIFRFSWRK 261

Query: 274 SMCLLGMM---QSLHE-------------------------------------EGIHTQH 293
           +  L+ +M   ++L E                                      G+HT+ 
Sbjct: 262 AEYLIPVMILLKALTETNDREIFEGLVGAAGSEGANNSFLTDRVEVLLRTHKASGLHTKS 321

Query: 294 DSKVFFGQIFKEKL-------QYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMT 346
            ++ + G +F+  L        YD       +I    L N  + H+ D  DKF  L  MT
Sbjct: 322 KTRAYLGGLFRPVLGVPDNMSNYDCGTEFLRKIVLVHLGNVNVTHVQDS-DKFKMLLFMT 380

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG------------------- 387
            KL+ +V G   +D+ D++  QEI+ GG LY  ++K+                       
Sbjct: 381 RKLYALVAGDCAVDNPDAVQHQEILLGGFLYGMIIKERLDDWMTRQLRLAIRQYVRKSPE 440

Query: 388 ----TSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
               T   LK+  +    + + ++  A+  FL+TGN+ +   + L L Q SGF ++AE I
Sbjct: 441 NNFTTPEFLKQFPVKLCGKTNENLGGALEYFLSTGNLVS--PTGLDLQQVSGFTVVAEKI 498

Query: 443 NRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           N +R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C+I
Sbjct: 499 NFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCRI 558

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
                +  ++ +P+++V LG++       +  ++A++V LDGRI+G+   + A  +   L
Sbjct: 559 --LTSASDVSALPALVVELGIVGAG---SASTKEAVVVTLDGRILGWCTPKQAIMIADTL 613

Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
           R  K+ G + +PK LEI ++  P    G YPG+Y+   P RM+RPV  L     + IG  
Sbjct: 614 RFWKVEGRRNVPKDLEICWV--PNSHGGQYPGIYMSATPSRMVRPVKYLPLDAEDLIGPQ 671

Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
           EQ FM I +T  E   G +TH E   T+ LS LAN+ P  D NQSPRNMYQCQM KQ+MG
Sbjct: 672 EQPFMSIAVTEPEIISGESTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMAKQSMG 731

Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
           TP    RY+   K YRLQT  +P  R   ++    DNFP G N++VAVISYTGYDM+DAM
Sbjct: 732 TPGTATRYRSDNKTYRLQTGQTPIVRAPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAM 791

Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGT---ETMYSGVDGSMMQAQIFFGVVHYQ 798
           I+NK S+ERGF HG ++K   + +  G N   +   E ++    GS ++A++        
Sbjct: 792 IINKGSHERGFGHGTVYKVKKVNIREGNNSRSSKNVEKLFGFAPGSEVKARV-------- 843

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW----KESEN 854
                                 KA+ D+   DGL  +G  + E D M   W    +++E 
Sbjct: 844 ----------------------KAMIDE---DGLPRIGRLVREGD-MLCAWHTVSRDAEG 877

Query: 855 RYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFAS 907
           + V         +Y   E   ++ VR+     E G+       I +RI R+P VGDKF+S
Sbjct: 878 KLVNKDGITHFEKYKDGEMAFIDEVRLIG--NENGAEPLQVCSIKFRIPRSPVVGDKFSS 935

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG+ S KWP+ D+PFT+SG+ PD++ NPH FPSRMTIG  
Sbjct: 936 RHGQKGVVSQKWPSVDMPFTESGMQPDVIINPHAFPSRMTIGMF 979



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GYNYYG E MYSG+ G  +   I+ G+V+YQRLRHMV+DK+Q +      P  +   
Sbjct: 1017 MKAGYNYYGNEPMYSGITGEELHCDIYIGLVYYQRLRHMVNDKFQVRSTGPITPLTRQPA 1076

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                  G + VG    ERD + ++      ++R + C    +  +C
Sbjct: 1077 KGRKKGGGIRVGEM--ERDSLLAHGTAFLLQDRLLNCSDYSRSWIC 1120


>gi|310793783|gb|EFQ29244.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1225

 Score =  563 bits (1452), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 356/1001 (35%), Positives = 531/1001 (53%), Gaps = 152/1001 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFML-DEGLDLAVEDIAPIEFEIY----------G 100
           F  PP     +  L    +PHI SF+ +   +G  L    +  I  + Y          G
Sbjct: 23  FRNPPKDHTAYPALQEAVSPHIDSFNALFRTDGKSLLARGLEDIGTKTYLDGDDRAGLEG 82

Query: 101 KT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           K  L + I   A+ + ++P         +  P E R+    Y G  + T  +  +     
Sbjct: 83  KNRLSIRIKSVALQKSQLPPSNKFARNREVLPAECRERHCTYRGRLSATFEYRINDGDPK 142

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
            F +E+G+VPIM+KS RCHL   +PAQL++R E  +E GGYFIV G EK++R+L  NRRN
Sbjct: 143 EFVRELGQVPIMVKSNRCHLEGNSPAQLVQRKEESEELGGYFIVNGIEKIIRMLQVNRRN 202

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG 279
            P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++++G+  F FS RK+  L+ 
Sbjct: 203 FPMAINRPSFQNRGQGYTPYGIILRSVRPDETSQTNVLHYLSDGNMTFRFSWRKNEYLVP 262

Query: 280 MM---QSLHE-------EGI------------------------------HTQHDSKVFF 299
           +M   +SL E       EG+                              +++ +++ + 
Sbjct: 263 VMMILKSLVETNDREIFEGLIGLSGSKSSKNTFLTDRVELLLRTYKSYCLYSKTETRAYL 322

Query: 300 GQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DKFLCLSHMTCKLFHV 352
           G+ F+  L      ++  ++    L   +L HL +         DKF  L  M  KL+ +
Sbjct: 323 GEKFRVVLGVP-DTMSNYDVGTEFLRKIVLVHLGNINVTEKEDNDKFRMLLFMIRKLYAL 381

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--EKSGTSAV---LKE------------S 395
           V G   +D+ D++  QE++ GG LY  +LK+  E+  T+AV   L+E             
Sbjct: 382 VAGDCSVDNPDAVQNQEVLLGGFLYGMILKERLEEFLTTAVRLSLREWTRKHPATPFTSQ 441

Query: 396 DIYAAFRASSIESAMTN-------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
           D    F A+    A  N       FL+TGN+++   S L L Q +GF ++AE +N +R++
Sbjct: 442 DFAKEFPANIFRHANENLGNGLEYFLSTGNLTS--PSGLDLQQTAGFTVVAEKLNFLRFL 499

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIP 507
           SHFR +HRG++F E++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I +E + 
Sbjct: 500 SHFRMIHRGAFFAELKTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHLAHKCKIMTEAVD 559

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
           +   ++IP ++  LG +  +    +  ++++++MLDGRIVG+   + +  +   LR  K+
Sbjct: 560 A---SKIPGLVAELGAVETS---SAATDESVVIMLDGRIVGFCTPRESLRIADTLRYWKV 613

Query: 568 VG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
            G   +P  LE+ Y+  P    G YPG+YL + P RM+RPV  L     +++G  EQ +M
Sbjct: 614 EGTHGVPLQLEVGYV--PPSNGGSYPGIYLASAPARMVRPVKYLPLDKEDFVGPHEQPYM 671

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
            I +   E   G +TH E + T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP   
Sbjct: 672 SIAVVEDEIVSGESTHVEFTPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATA 731

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
            RY+   K+YRLQ+  +P  R   ++    DNFP G NA+VAVISYTGYDM+DAMILNKS
Sbjct: 732 LRYRTDNKMYRLQSGQTPVVRSPLHNAYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKS 791

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           ++ERGF HG I+K+  I L+               D S  ++     V +  +L      
Sbjct: 792 AHERGFGHGTIYKTKKITLK---------------DESRTRS-----VKNISKLFGFAPG 831

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK-- 864
            +    Y G          +L  DGL YVG  + E D + ++        V+  YSGK  
Sbjct: 832 GFVKGHYRG----------QLDEDGLPYVGRLVQEGDVLCAW------HTVSADYSGKLV 875

Query: 865 --------------EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
                         E   VE VR+    +E G+       I  R+ R+P +GDKF+SR G
Sbjct: 876 NLDGQTHYEKYKDSETAFVEEVRVIG--SETGNEPAQTISIKLRVPRSPVIGDKFSSRHG 933

Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           QKG+ S KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 934 QKGVASQKWPAVDMPFSESGMQPDVIINPHAFPSRMTIGMF 974



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1012 MKAGYNYHGNEPMYSGITGEELAADIYVGVVYYQRLRHMVNDKYQVR 1058


>gi|440793499|gb|ELR14681.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
           str. Neff]
          Length = 1139

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 346/961 (36%), Positives = 518/961 (53%), Gaps = 111/961 (11%)

Query: 59  DKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY--GKTLKLNIVKAAISEPK 116
           +K N  +  +  P I SF+F + +GL LAV+D+   EF++   G  +KL      I++P 
Sbjct: 25  EKLNPKMQDMTRPQIESFNFAMQDGLQLAVQDLLKEEFQVAKGGPAVKLWYEDFQIAKPS 84

Query: 117 VPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKR 176
                      K YP E R+    Y+G    T+ +   G+  G   + +G++P+M+KS +
Sbjct: 85  RDNLD-----EKLYPNECREGGFTYNGLCVATIGYKV-GEKVGRLQRTMGKIPLMVKSNK 138

Query: 177 CHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLF 236
           CHL  ++PA+L++  E   E GGYFI+ G EKL+RL+   +RN      R +W  +G  +
Sbjct: 139 CHLDGMSPAELVKAREEGTELGGYFIINGLEKLIRLICMPKRNF-----RPSWAGKGNYY 193

Query: 237 SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-------MCLLGMMQS------ 283
           +  GV IRSV++D+S  N  LH+++NGS     S  K        + L  ++ +      
Sbjct: 194 TQHGVQIRSVRKDQSNQNMTLHYLSNGSCSLRISVFKQEYFIPGILILKALISTTDREIY 253

Query: 284 --------------------LHE----EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEI 319
                               L E    E + T+     + G  F+  L+   R + ++E+
Sbjct: 254 NSLVRGDVENTFLTDRVEVILREAKSYENMETKEQCLAYLGSSFRIALRVPER-MTDIEV 312

Query: 320 CDYMLTNCILPHLDDYWDK--FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY 377
             ++L   I  HL+   +K  F  L+ M  KL+ +  G +  D+ DS M  E++  G +Y
Sbjct: 313 GQFLLDRYIFVHLNPQKNKQKFDLLAFMIRKLYSLASGEIGPDNADSPMNFELLLPGHVY 372

Query: 378 LQLLKKE------------------KSGTSAVLKESDIYAAFRAS-----SIESAMTNFL 414
           L  LK++                   S  + +  ESD     R +      +   +  FL
Sbjct: 373 LMFLKEKMQEWLVGVKLILNKLHAMPSAKAGLTWESDPEGYLRKAMEKNFDLGKKVDYFL 432

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
           ATGN+ +  ++ + LMQ +G+V++AE +N +RY SHFR VHRG++F  M+++  R+L  +
Sbjct: 433 ATGNLIS--STGMGLMQLNGYVVVAEKLNWLRYFSHFRCVHRGAFFATMKTTAVRKLMPE 490

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI 533
           +WGF CPVHTPDG PCGL+NHLT  C+ I+    ++ +A   S+LVSLG+ P +  I   
Sbjct: 491 SWGFFCPVHTPDGAPCGLINHLTAVCRLITHQADTRRMA---SLLVSLGVSPASQSILFP 547

Query: 534 PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYP 592
            +Q L V LDG ++G+I    A  LV KLR LK+   E IP +LE+  +  P      YP
Sbjct: 548 SDQYLDVFLDGELMGFIPHAAAPQLVEKLRYLKVKKLEDIPWTLELGLV--PAGVSKQYP 605

Query: 593 GLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY-PGITTHRELSKTDFL 651
           GLY++T P RM+RPV  LA G+IE+IG+FEQV+M+I +  ++     I TH+E+   + L
Sbjct: 606 GLYMWTTPSRMMRPVKYLATGDIEYIGSFEQVYMNIAVLDEDRKDKDIFTHQEIRPMNML 665

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
           S +A L P  D NQSPRNMYQCQM KQ++ TPC +++++   K+YR+Q P +P  R   Y
Sbjct: 666 SVVAGLTPFCDMNQSPRNMYQCQMAKQSIATPCHSFQHRTDNKIYRIQNPQAPVSRTNVY 725

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           D  ++D++P+G NAIVAV+SYTGYDMEDAMI+NK++Y+RGF H  ++K+  ++  +    
Sbjct: 726 DEYELDDYPIGANAIVAVLSYTGYDMEDAMIINKAAYQRGFGHASVYKNELVDF-ARKEK 784

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK-WQTKDYFGRDPANKALEDKLGPD 830
            G    Y                        +V DK  Q  D  G  PA K   ++L  D
Sbjct: 785 KGDAPKYIA--------------------NPLVEDKDQQAMDEDGMQPAKKRFCEELEED 824

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
           GL   G +L    P Y        +    RY  KEE  V+ VR+    ++G         
Sbjct: 825 GLPAPGTRLEAGSPFYVTVDGGTGKPHLHRYKSKEEAVVDEVRVVGTSSKG---LIQRVS 881

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
           I  R+ RNP +GDKFASR GQKG+ S  WP E++PF++SG+ PD++ NPH FPSRMTI  
Sbjct: 882 IKLRLNRNPVIGDKFASRHGQKGVMSQLWPQENMPFSESGMSPDVIINPHAFPSRMTIAM 941

Query: 951 L 951
           L
Sbjct: 942 L 942



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 37/47 (78%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L +GYNYYG E MYSG+ G  ++A I+ GVV+YQRLRHMV DK+Q +
Sbjct: 980  LAAGYNYYGNEPMYSGILGCELRADIYLGVVYYQRLRHMVKDKYQVR 1026


>gi|322709186|gb|EFZ00762.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Metarhizium
           anisopliae ARSEF 23]
          Length = 1231

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 357/998 (35%), Positives = 534/998 (53%), Gaps = 145/998 (14%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFDFML-DEG----LDLAVEDIAPIEF----EIYG-- 100
           F  PP   + +  L L   PHI SF+ +  ++G    LD  + DI    F    E  G  
Sbjct: 23  FQNPPKDHSAYPALQLAVNPHIESFNRIFGNDGKKGLLDYGLTDIGTKTFLDGDERSGPE 82

Query: 101 --KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               L++ I   ++ +P+VP         +  P E R+    Y G  + T  +S +G   
Sbjct: 83  GKNRLRIRIKGVSLQKPQVPPTNKMARNREILPAECRERHVSYRGRLSATFEYSINGGEP 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             F +E+G+VPIM+KS RCHL N +PAQL++R E  +E GGYFIV G EK++RLL  N+R
Sbjct: 143 IEFVRELGQVPIMIKSNRCHLENNSPAQLVQRKEESEELGGYFIVNGIEKIIRLLQVNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS---- 274
           N P+AI R ++++RG  ++  GV +RSV+ DE++  NVLH++ +G+  F  S RK+    
Sbjct: 203 NFPMAINRPSFQSRGAGYTSYGVIVRSVRPDETSQTNVLHYLNDGNITFRISWRKNEYLI 262

Query: 275 ---MCLLGMMQSLHEE---------------------------------GIHTQHDSKVF 298
              M L  ++++   E                                 G++++  ++ +
Sbjct: 263 PVIMILKALVETNDREIFEGLIGPMGSKVTENTFLTDRVELLLRTYKSYGLYSKSQTRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            G+ F+  L      +++ E+    L   +L HL +         DKF  L  M  KL+ 
Sbjct: 323 LGEKFRVVLGVP-ETMSDYEVGTEFLRRIVLVHLGNVNVTEEQDLDKFRMLLFMVRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KSGTSAVLKE------------ 394
           +  G   +D+ D++  QEI+ GG LY Q+LK+        G  + L++            
Sbjct: 382 LAAGECAVDNPDALQNQEILLGGFLYGQILKERLDEFLSVGVRSSLRDFLRRHPEVPFTS 441

Query: 395 SDIYAAFRASSIESAMTN-------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
            D    F  +  + A  N       FL+TGN+ +   S L L Q +GF ++AE +N +R+
Sbjct: 442 EDFRKEFPGAIFKKANENLGNALEYFLSTGNLQS--PSGLDLQQTAGFTVVAEKLNFLRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYI 506
           +SHFR VHRG++F ++R++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I ++++
Sbjct: 500 ISHFRMVHRGAFFAQLRTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHLAHKCKIVTDHV 559

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
            +   +++P+++  LG++  +  + S     ++VM+DG+I+G+   + +  +   LR  K
Sbjct: 560 DA---SKLPALVKELGVVDTSSALTS---DNVVVMMDGKILGWCTPKESLRIADCLRYWK 613

Query: 567 IVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LEI Y+  P    G YPG+Y+ + P RM+RPV  L     +++G +EQ +
Sbjct: 614 VEGTHGVPLQLEIGYV--PVSNGGSYPGVYITSTPARMVRPVKYLPLQKEDFVGPYEQPY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G++TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP  
Sbjct: 672 MSIAVLPQEIESGVSTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGA 731

Query: 686 NWRYQGVGKLYRLQTPASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
             RY+   K YR+QT  +P  R P+H D    DNFP G NA+VAVISYTGYDM+DAMILN
Sbjct: 732 AIRYRTDNKSYRIQTGQTPIVRAPLHND-YGFDNFPNGMNAVVAVISYTGYDMDDAMILN 790

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           KS++ERGF HG I+K+  I L+        +++              FG   +      V
Sbjct: 791 KSAHERGFGHGTIYKTKKITLKDDSRTRAAKSVTKA-----------FGFAPHS----YV 835

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY-------- 856
           S  +Q             L+D    DGL +VG  + E D + + W      Y        
Sbjct: 836 SASYQ-----------GMLDD----DGLPHVGRLVQEGDVICA-WHTVTPDYNGNLVNLD 879

Query: 857 -VTC--RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKG 913
            +T   +Y   E   VE VR+    T  G  T     I +RI R+P +GDKF+SR GQKG
Sbjct: 880 GITHYEKYKDGETGFVEEVRLIGADT--GGETLQTVSIKFRIPRSPIIGDKFSSRHGQKG 937

Query: 914 ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           + S KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 938 VASQKWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMF 975



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GY+Y+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGYSYHGNEPMYSGITGEELGADIYIGVVYYQRLRHMVNDKFQVR 1059


>gi|342873602|gb|EGU75766.1| hypothetical protein FOXB_13785 [Fusarium oxysporum Fo5176]
          Length = 1232

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 355/1002 (35%), Positives = 523/1002 (52%), Gaps = 153/1002 (15%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFD--FMLDEGLDLAVEDIAPIEFEIY---------- 99
           F  PP     +  L L   PH+ SF+  F  D    L    IA I    Y          
Sbjct: 23  FRNPPKDHTAYPALQLAVDPHLESFNGLFRDDGKPGLLAHGIADIGARTYLDGDDRASPD 82

Query: 100 GKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
           GK  L +      + +P+VP         + +P E R+    Y G  + T+ +  +G   
Sbjct: 83  GKNRLTIRYKDVFLQKPQVPPSNKMARNRQVFPAECRERHVTYRGRLSATLEYRINGGDP 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             FT+E G+VP+M+KS RCHL N +PA L+ER E  +E GGYFIV G EK++R+L  N+R
Sbjct: 143 VEFTREFGQVPVMIKSNRCHLENNSPALLVERKEESEELGGYFIVNGIEKIIRMLQLNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R +++NRG  ++  G+ +R+V+ DE++  NVLH++++G+  F FS RK+  L+
Sbjct: 203 NFPMAINRPSFQNRGPGYTPYGIILRAVRPDETSQTNVLHYLSDGNMTFRFSWRKNEYLV 262

Query: 279 GMMQSLHE----------EGI------------------------------HTQHDSKVF 298
            +M  L            EG+                              +++ D++ +
Sbjct: 263 PVMMILKALVETNDREIFEGLVGPAGSKSTENTFLTHRIELLLRTYKSYNLYSKSDTRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            G+ F+  L       N +E+    L   +L HL +         +KF  L  M  KL+ 
Sbjct: 323 LGEKFRVVLGVPDTMTN-LEVGTEFLRRIVLVHLGNVDVTEEQDKEKFKLLLFMIRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----------------KSGTSAVLKE 394
           +V G   +D+ D++  QEI+ GG LY Q+LK+                  +         
Sbjct: 382 LVAGDCAVDNPDAVQNQEILLGGFLYGQILKERLDEFLSVNVRASLRDYLRRNPGVAFTS 441

Query: 395 SDIYAAFRASSIESAMTN-------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
            D    F  +    A  N       FL+TGN+ +   S L L Q +GF ++AE +N +R+
Sbjct: 442 EDFRKEFPNNIFRKANENLGNALEYFLSTGNLQSA--SGLDLQQTAGFTVVAEKLNFLRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYI 506
           +SHFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I ++Y+
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGAPCGLLNHLAHKCKIMTDYV 559

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++ I S+   LG++ ++    +  E+ ++VMLDG+I+G+   + +  +    R  K
Sbjct: 560 D---VSHIASLAQELGIVDVS---SASTEENVVVMLDGKILGFCTPKESVRIADCFRYWK 613

Query: 567 IVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LEI Y+  P +G G YPG+Y+ + P RM+RPV  L     +W+G +EQ +
Sbjct: 614 VEGTHGVPLQLEIGYVP-PSRG-GSYPGIYMTSTPARMVRPVKYLPLQKEDWVGPYEQPY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP  
Sbjct: 672 MSIAVVPQEVESGKSTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGA 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             RY+   K YR+QT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMILNK
Sbjct: 732 AIRYRTDNKSYRIQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGF HG I+K+  I L+       T+++              FG   +      VS
Sbjct: 792 SAHERGFGHGTIYKTKKISLKDDSRTKATKSVTKA-----------FGFAPHS----YVS 836

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK- 864
            ++Q             L+D    DGL +VG  + E D + ++        VT  Y+GK 
Sbjct: 837 AQYQ-----------GMLDD----DGLPHVGRLIQEGDVICAW------HTVTPDYNGKL 875

Query: 865 ---------------EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
                          E   VE VR+     + G+       + +RI R+P +GDKF+SR 
Sbjct: 876 VNLDGITHYEKYKDSENGFVEEVRLIGA--DSGNEPLQTISVKFRIPRSPIIGDKFSSRH 933

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG+ S KWP  DLPF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 934 GQKGVASQKWPTMDLPFSETGISPDIIINPHAFPSRMTIGMF 975



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGYNYHGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKYQVR 1059


>gi|296803847|ref|XP_002842776.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma otae CBS
           113480]
 gi|238846126|gb|EEQ35788.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma otae CBS
           113480]
          Length = 1243

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 356/1014 (35%), Positives = 522/1014 (51%), Gaps = 158/1014 (15%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP  +  +     A  PHI SF+ + ++G  ++ A++DI    F          
Sbjct: 19  ERLFRHPPKDKTAYPALAAAIRPHIDSFNALFEDGKVMEAALKDIGVKSFIDGNPETPEE 78

Query: 97  -----EIYGKTLKLNIVKAAISE-----PKVPAGPVGIHFNKY-------YPTEARQTRS 139
                E   +T K N +   I+E       +PA       NKY       YP+E R+  +
Sbjct: 79  KAARREEGRRTPKRNRLSVRITELFLEKAVLPAS------NKYSTRNREIYPSECRERHA 132

Query: 140 VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
            Y G     + +  +        +E+G+VPIML+S RCHL   TP+QL+ER E  +E GG
Sbjct: 133 TYRGKLRARLEYRVNNGEWKESVRELGQVPIMLRSNRCHLEKATPSQLVERKEESEELGG 192

Query: 200 YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHF 259
           YF+V G+EKL+R+LI  +RN P AI RN+++ RG  ++  G+ IRSV+ D+++  NVLH+
Sbjct: 193 YFVVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGIQIRSVRPDQTSQTNVLHY 252

Query: 260 VTNGSARFMFSHRKS-------MCLLGMMQSLHEE------------------------- 287
           +++G+    FS RK+       M L  ++++   E                         
Sbjct: 253 LSDGNVTLRFSWRKNEYLVPVMMVLKALIETNDREIFERLVGREDSLGIENTFVTDRVEL 312

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW--- 336
                   G+H++   + + G  F+  L      + + ++    L   +LPHL +     
Sbjct: 313 LLRTYKAYGVHSRSKCRAYLGSKFRFVLGMP-EDVPDEDVGTEFLRKIVLPHLGNQNVTE 371

Query: 337 ----DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KSG 387
               DKF  +  M  KL+ +V G    D+ D+I  QE++ GG LY  LLK+      KS 
Sbjct: 372 SQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAISNQEVLLGGYLYGMLLKERLEEWLKSV 431

Query: 388 TSAV-----------LKESDIYAAFRA-------SSIESAMTNFLATGNVSAGKNSTLQL 429
              V             +      F A        +I  A+  FL+TGN+ +   + L L
Sbjct: 432 GPIVRDWRMRNQDTKFTDPKFEREFLAKVIGRTNENIGGALEYFLSTGNLVS--PTGLDL 489

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
            Q SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+P
Sbjct: 490 QQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSP 549

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
           CGLLNHL   C IS    +  ++ +P VL  LG   +T       E+++ V L+G+I+GY
Sbjct: 550 CGLLNHLAHKCLIS--TSNLDVSGVPGVLAGLG---VTSESSCSTEESIPVQLNGKILGY 604

Query: 550 ILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
              + + ++   LR  K+ G K IP  LEI Y+  P    G YPG+Y+F+   RM RPV 
Sbjct: 605 CTPKQSRAIADTLRYWKVQGHKHIPVELEIGYV--PSSSGGQYPGVYMFSEAARMYRPVR 662

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
            L    ++++G FEQ +M+I     +   GI+TH E   T  LS LAN+ P  D NQSPR
Sbjct: 663 YLPLDKLDYVGPFEQPYMEIACIASDIRNGISTHIEFDPTHILSILANMTPFSDFNQSPR 722

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           NMYQCQMGKQ MGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VA
Sbjct: 723 NMYQCQMGKQAMGTPGTAIDYRTDNKLYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVA 782

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           VISYTGYDM+DAMI+NKSS+ERGF +G I+K+    L+        +    G   S    
Sbjct: 783 VISYTGYDMDDAMIINKSSHERGFGYGTIYKTKVYALD--------DKESRGRGASKRSI 834

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE------- 841
              FG         ++  +W+                +L  DGL ++GAK++E       
Sbjct: 835 TKLFGFAP----GGLIKAEWKA---------------QLDEDGLPHIGAKVSEGSLVGAW 875

Query: 842 ----RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQR 897
                DP    +   + +    +Y   EE  V+ VR+     E G+       I YR+ R
Sbjct: 876 HTVQYDPATDTYVNVDKQTHFLKYKDGEEGYVDSVRILG--AETGNEVCQAVSIKYRVPR 933

Query: 898 NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            P +GDKF+SR GQKG+ S  WP+ D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 934 RPVIGDKFSSRHGQKGVLSQLWPSTDMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVR 1071


>gi|452002554|gb|EMD95012.1| hypothetical protein COCHEDRAFT_1191766 [Cochliobolus
           heterostrophus C5]
          Length = 1213

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 350/1007 (34%), Positives = 513/1007 (50%), Gaps = 160/1007 (15%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEGLDLA--VEDIAPIEF---------EIYG 100
           F  PP  +  +     A  PHI SF+ +   G  LA  + DI    F         E  G
Sbjct: 28  FRNPPKDKTAYPTLAAAVDPHINSFNAIFAPGGQLAEGIRDIGTKVFLDGNPYATPEETG 87

Query: 101 --KTLKLNIVKAAISEPKVP-AGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
               L L I    + +P +P    V +      P E R+  + Y G     + W  +   
Sbjct: 88  PRNRLHLRIQDVFLDKPVLPPTNKVALKNRNILPAETRERHATYRGKMRARLEWRVNNGD 147

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                 ++G +PIMLKS RCHL  L PA L++  E  DE GGYFI+ G+EK++R+L  N 
Sbjct: 148 WQEEVVDLGSIPIMLKSNRCHLEGLPPAALVKAKEESDELGGYFIINGNEKIIRMLQVNH 207

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS--- 274
           RN+P+AIKR A+ NRG  ++  G+ +RS++ D+++  N LH++++G+  F FS RK+   
Sbjct: 208 RNYPMAIKRGAFTNRGPGYTQFGIQLRSMRPDQTSQTNALHYLSDGNVNFRFSWRKAEYL 267

Query: 275 ----MCLLGMMQSLHEE----------------------------------GIHTQHDSK 296
               M L  ++++   E                                  G+H++  ++
Sbjct: 268 VPICMILKALVETNDREIFEGLVGAAGSEGLEQKQFVTDRVELLLRTYKVYGLHSKAKTR 327

Query: 297 VFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-------DYWDKFLCLSHMTCKL 349
            + G+ FK  +Q      +E E     L   +LPHL           DKF  L  MT KL
Sbjct: 328 AYLGEKFKVVMQLPADVTDE-EAGTEFLRKIVLPHLGCVNVTPAQDADKFRMLLFMTRKL 386

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------------------- 384
           + +V+G   +D+ D++  QEI+ GG LY  +LK+                          
Sbjct: 387 YALVEGDCAVDNPDAVQNQEILLGGQLYGMILKERLEEWLNSFQLVLREWGRRTEYRPFT 446

Query: 385 -----KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
                K  +S +L+ + +       +I  AM  FL+TGN+ +   + L L Q SGFV++A
Sbjct: 447 SQEFHKDWSSKILRRTQL-------AIGQAMEYFLSTGNLVS--PTGLDLQQTSGFVVVA 497

Query: 440 ENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           E +N  R++SHFR VHRG++F  ++++  R+L  ++WGF+CPVHTPDG+PCGLLNH +  
Sbjct: 498 EKLNFPRFISHFRMVHRGAFFATLKTTTVRKLLPESWGFMCPVHTPDGSPCGLLNHFSHT 557

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
           C+I+    +  ++ +P ++  LG   ++    +  + +++V LDGR++G+   + A  + 
Sbjct: 558 CKIA--TTNLDVSAVPKLVAELG---VSSKSSASLDASVVVQLDGRVLGFCSPKQAKIIS 612

Query: 560 PKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWI 618
             LR  K+ G   +P  +EI Y+  P    G YPG+Y+F+   RM RPV  L    ++++
Sbjct: 613 DTLRYWKVEGSHGVPVEMEIGYI--PNSNNGQYPGVYMFSQCSRMYRPVKYLPLNKLDYV 670

Query: 619 GTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           G FEQ +M I +T  E   G +TH E   T+  S +AN  P  D NQSPRNMYQCQMGKQ
Sbjct: 671 GPFEQPYMSISVTDAEIVSGDSTHVEFEPTNIFSIIANQTPFSDFNQSPRNMYQCQMGKQ 730

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
           +MGTP    RY+   K YRLQT  +P  RP  Y+   MDNFP G NA+VAVISYTGYDM+
Sbjct: 731 SMGTPGTAMRYRTDNKTYRLQTGQTPIARPPLYNEYGMDNFPNGMNAVVAVISYTGYDMD 790

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DAMILNKSS+ERGF HG ++K+  + LE G                              
Sbjct: 791 DAMILNKSSHERGFGHGTVYKTKILNLEEGN----------------------------- 821

Query: 799 RLRHMVSDKWQTKDYFGRDPA---NKALEDKLGPDGLVYVGAKLNERDPMYSY----WKE 851
             R   S+K   K  FG  P        ++ L  DGL  +G  L   DP+ ++    +  
Sbjct: 822 --RKSRSNKSIAK-LFGFAPEGLIKAESKETLDIDGLPRIGTMLRSGDPIAAFHTVSYDA 878

Query: 852 SENRYVT-------CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
           +   YV         +Y   E   VE VR+    +E G+       +  R  R+P VGDK
Sbjct: 879 ATGDYVNRDGQTQFLKYKEDEIAFVEEVRVIG--SEDGTQPCQKVSVKLRTPRSPVVGDK 936

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F+SR GQKG+ S K+P  D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 937 FSSRHGQKGVVSQKFPTTDMPFSESGIQPDVIINPHAFPSRMTIGMF 983



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 17/137 (12%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYG E MYSG+ G  + A I+ GVV YQRLRHMV+DK+Q +      P+N      
Sbjct: 1023 AGYNYYGNEPMYSGITGEELYADIYIGVVFYQRLRHMVNDKFQVRS---NGPSNALTGQP 1079

Query: 827  L---GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
            +      G + VG    ERD + ++      ++R + C    K  +C    R    F   
Sbjct: 1080 IKGRKKGGGIRVGEM--ERDALLAHGTAFLLQDRLMNCSDYTKAAVC----RTCGSFL-- 1131

Query: 882  GSVTPNCAYIGYRIQRN 898
             S TP  +  G +  RN
Sbjct: 1132 -STTPTVSEYGRKKDRN 1147


>gi|451852990|gb|EMD66284.1| hypothetical protein COCSADRAFT_179601 [Cochliobolus sativus
           ND90Pr]
          Length = 1213

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 350/1007 (34%), Positives = 513/1007 (50%), Gaps = 160/1007 (15%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEGLDLA--VEDIAPIEF---------EIYG 100
           F  PP  +  +     A  PHI SF+ +   G  LA  + DI    F         E  G
Sbjct: 28  FRNPPKDKTAYPTLAAAVDPHINSFNAIFAPGGQLAEGIRDIGTKVFLDGSPYATPEETG 87

Query: 101 --KTLKLNIVKAAISEPKVP-AGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
               L L I    + +P +P    V +      P E R+  + Y G     + W  +   
Sbjct: 88  PRNRLHLRIQDVFLDKPVLPPTNKVALKNRNILPAETRERHATYRGKMRARLEWRVNNGD 147

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                 ++G +PIMLKS RCHL  L PA L++  E  DE GGYFI+ G+EK++R+L  N 
Sbjct: 148 WQEEVVDLGSIPIMLKSNRCHLEGLPPAALVKAKEESDELGGYFIINGNEKIIRMLQVNH 207

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS--- 274
           RN+P+AIKR A+ NRG  ++  G+ +RS++ D+++  N LH++++G+  F FS RK+   
Sbjct: 208 RNYPMAIKRGAFTNRGPGYTQFGIQLRSMRPDQTSQTNALHYLSDGNVNFRFSWRKAEYL 267

Query: 275 ----MCLLGMMQSLHEE----------------------------------GIHTQHDSK 296
               M L  ++++   E                                  G+H++  ++
Sbjct: 268 VPICMILKALVETNDREIFEGLVGAAGSEGLEQKQFVTDRVELLLRTYKVYGLHSKAKTR 327

Query: 297 VFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-------DYWDKFLCLSHMTCKL 349
            + G+ FK  +Q      +E E     L   +LPHL           DKF  L  MT KL
Sbjct: 328 AYLGEKFKVVMQLPADVTDE-EAGTEFLRKIVLPHLGCVNVTPAQDADKFRMLLFMTRKL 386

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------------------- 384
           + +V+G   +D+ D++  QEI+ GG LY  +LK+                          
Sbjct: 387 YALVEGDCAVDNPDAVQNQEILLGGQLYGMILKERLEEWLNSFQIVLREWGRRTEYRPFT 446

Query: 385 -----KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
                K  +S +L+ + +       +I  AM  FL+TGN+ +   + L L Q SGFV++A
Sbjct: 447 SQEFHKDWSSKILRRTQL-------AIGQAMEYFLSTGNLVS--PTGLDLQQTSGFVVVA 497

Query: 440 ENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           E +N  R++SHFR VHRG++F  ++++  R+L  ++WGF+CPVHTPDG+PCGLLNH +  
Sbjct: 498 EKLNFPRFISHFRMVHRGAFFATLKTTTVRKLLPESWGFMCPVHTPDGSPCGLLNHFSHT 557

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
           C+I+    +  ++ +P ++  LG   ++    +  + +++V LDGR++G+   + A  + 
Sbjct: 558 CKIA--TTNLDVSAVPKLVAELG---VSSKSSASLDASVVVQLDGRVLGFCSPKQAKIIS 612

Query: 560 PKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWI 618
             LR  K+ G   +P  +EI Y+  P    G YPG+Y+F+   RM RPV  L    ++++
Sbjct: 613 DTLRYWKVEGSHGVPVEMEIGYI--PNSNNGQYPGVYMFSQCSRMYRPVKYLPLSKLDYV 670

Query: 619 GTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           G FEQ +M I +T  E   G +TH E   T+  S +AN  P  D NQSPRNMYQCQMGKQ
Sbjct: 671 GPFEQPYMSISVTDAEIVSGDSTHVEFEPTNIFSIIANQTPFSDFNQSPRNMYQCQMGKQ 730

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
           +MGTP    RY+   K YRLQT  +P  RP  Y+   MDNFP G NA+VAVISYTGYDM+
Sbjct: 731 SMGTPGTAMRYRTDNKTYRLQTGQTPIARPPLYNEYGMDNFPNGMNAVVAVISYTGYDMD 790

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DAMILNKSS+ERGF HG ++K+  + LE G                              
Sbjct: 791 DAMILNKSSHERGFGHGTVYKTKILNLEEGN----------------------------- 821

Query: 799 RLRHMVSDKWQTKDYFGRDP---ANKALEDKLGPDGLVYVGAKLNERDPMYSY----WKE 851
             R   S+K   K  FG  P        ++ L  DGL  +G  L   DP+ ++    +  
Sbjct: 822 --RKSRSNKSIAK-LFGFAPEGLVKAESKETLDIDGLPRIGTMLRSGDPIAAFHTVSYDA 878

Query: 852 SENRYVT-------CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
           +   YV         +Y   E   VE VR+    +E G+       +  R  R+P VGDK
Sbjct: 879 ATGDYVNRDGQTQFLKYKEDEIAFVEEVRVIG--SEDGTQPCQKVSVKLRTPRSPVVGDK 936

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F+SR GQKG+ S K+P  D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 937 FSSRHGQKGVVSQKFPTTDMPFSESGIQPDVIINPHAFPSRMTIGMF 983



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/137 (35%), Positives = 67/137 (48%), Gaps = 17/137 (12%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYG E MYSG+ G  + A I+ GVV YQRLRHMV+DK+Q +      P+N      
Sbjct: 1023 AGYNYYGNEPMYSGITGEELYADIYIGVVFYQRLRHMVNDKFQVRS---NGPSNALTGQP 1079

Query: 827  L---GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
            +      G + VG    ERD + ++      ++R + C    K  +C    R    F   
Sbjct: 1080 IKGRKKGGGIRVGEM--ERDALLAHGTAFLLQDRLMNCSDYTKAAVC----RTCGSFL-- 1131

Query: 882  GSVTPNCAYIGYRIQRN 898
             S TP  +  G +  RN
Sbjct: 1132 -STTPTVSEYGRKKDRN 1147


>gi|302503725|ref|XP_003013822.1| hypothetical protein ARB_07934 [Arthroderma benhamiae CBS 112371]
 gi|291177388|gb|EFE33182.1| hypothetical protein ARB_07934 [Arthroderma benhamiae CBS 112371]
          Length = 1243

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 355/1015 (34%), Positives = 520/1015 (51%), Gaps = 160/1015 (15%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEFEIYGKT---- 102
           ++ F  PP  +  +     A  PHI SF+ + ++   L+ A++DI    F I G +    
Sbjct: 19  ERLFRHPPKDKTAYPALAAAIRPHIDSFNALFEDTKVLEAALKDIGIKSF-IDGSSETPE 77

Query: 103 -----------------LKLNIVKAAISEPKVPAGPVGIHFNKY-------YPTEARQTR 138
                            L + I +  + +  +PA       NKY       YP E R+  
Sbjct: 78  EKASRREDGRRAPKRNKLSVRITELFLEKAVLPAS------NKYSTRNREIYPAECRERH 131

Query: 139 SVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWG 198
           + Y G     + +  +        +E+G+VPIM++S RCHL   TP+QL++  E  +E G
Sbjct: 132 ATYRGRLRARLEYRINNGEWKESVRELGQVPIMIRSNRCHLEKATPSQLVDHKEESEELG 191

Query: 199 GYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLH 258
           GYFIV G+EKL+R+LI  +RN P AI RN+++ RG  ++  GV +RSV+ D+++  NVLH
Sbjct: 192 GYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPDQTSQTNVLH 251

Query: 259 FVTNGSARFMFSHRKS-------MCLLGMMQSLHEE------------------------ 287
           ++ +G+  F FS RK+       M L  ++++   E                        
Sbjct: 252 YLNDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIFERLVGREGSLGIENTFVTDRVE 311

Query: 288 ---------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-- 336
                    G+H++   + + G  F+  L      + E ++    L   +LPHL +    
Sbjct: 312 LLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMP-EDIPEEDVGTEFLRKIVLPHLGNQNVT 370

Query: 337 -----DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KS 386
                DKF  +  M  KL+++V G    D+ D++  QE++ GG LY  LLK+      KS
Sbjct: 371 ETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYLYGMLLKERLEEWLKS 430

Query: 387 -----------GTSAVLKESDIYAAFRA-------SSIESAMTNFLATGNVSAGKNSTLQ 428
                         A   +      F          +I  AM  FL+TGN+ +   + L 
Sbjct: 431 VGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRTNENIGGAMEYFLSTGNLVS--PTGLD 488

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 489 LQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 548

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNHL   C IS    +  ++ IP VL  LG   +T       E+++ V LDG+I+G
Sbjct: 549 PCGLLNHLAHKCLIS--TSNLDVSGIPGVLAGLG---VTSESSCSIEESIPVQLDGKILG 603

Query: 549 YILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           Y   + + ++   LR  K+ G K IP  LEI Y+  P    G YPG+Y+F+   RM RPV
Sbjct: 604 YCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYV--PSSNGGQYPGVYMFSEAARMYRPV 661

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L    ++++G FEQ +M+I     +   G++TH E   T  LS LAN+ P  D NQSP
Sbjct: 662 KYLPLDKLDYVGPFEQPYMEIACVASDIRNGVSTHIEFDPTHILSILANMTPFSDFNQSP 721

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQMGKQ MGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+V
Sbjct: 722 RNMYQCQMGKQAMGTPGTAIDYRTDNKLYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVV 781

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           AVISYTGYDM+DAMI+NKSS+ERGF +G I+K+    L+        +    G   S   
Sbjct: 782 AVISYTGYDMDDAMIINKSSHERGFGYGTIYKTKIYALD--------DKESRGRGKSKRA 833

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE------ 841
               FG         +V  +W+ +               L  DGL ++GAK++E      
Sbjct: 834 ITKLFGFAP----GGLVKAEWKAQ---------------LDEDGLPHIGAKVSEGSLVGA 874

Query: 842 -----RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
                 DP    +   + +    +Y   EE  ++ VR+    +E G+       I YR+ 
Sbjct: 875 WHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLG--SETGNEVCQAISIKYRVP 932

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R P +GDKF+SR GQKG+ S  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 933 RRPVIGDKFSSRHGQKGVLSQLWPATDMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1027 AGYNFHGNEPMYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVR 1071


>gi|261199570|ref|XP_002626186.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces
           dermatitidis SLH14081]
 gi|239594394|gb|EEQ76975.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces
           dermatitidis SLH14081]
 gi|239615559|gb|EEQ92546.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces
           dermatitidis ER-3]
 gi|327354710|gb|EGE83567.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1243

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 346/1016 (34%), Positives = 526/1016 (51%), Gaps = 162/1016 (15%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEFEIYGKTLKLN 106
           ++ F  PP  Q  +  L     PHI SF+ + D+   L+ A++DI    F + G    L 
Sbjct: 19  ERLFRNPPKDQTAYPSLSATIRPHIDSFNALFDDHKVLEAAIKDIGTKSF-LDGDAETLE 77

Query: 107 IVKAAISEPK---------------------VPAG-PVGIHFNKYYPTEARQTRSVYSGP 144
             +A + E +                     +PA         + YP+E R+  + Y G 
Sbjct: 78  QKRARLEEGRRAPRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGR 137

Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
               + +  +        +E+G+VPIML+S RCHL   +P QL++R E  +E GGYFIV 
Sbjct: 138 LRARLEYKVNNGEWKESVRELGQVPIMLRSNRCHLEKASPEQLVQRKEESEELGGYFIVN 197

Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS 264
           G+EKL+R+LI  RRN P+AI RN++  RG  ++  G+ IRSV+ D+++  NVLH++++G+
Sbjct: 198 GNEKLIRMLIVGRRNFPMAIVRNSFTKRGPTYTKYGIQIRSVRPDQTSQTNVLHYLSDGN 257

Query: 265 ARFMFSHRK-------SMCLLGMMQSLHEE------------------------------ 287
             F FS RK       +M L  ++++   +                              
Sbjct: 258 VTFRFSWRKNEFLVPVAMILKALVETNDRDIFERLVGREGSKGIQNSFVTDRVELLLRTY 317

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------D 337
              G+H + D++ + G+ F+  L       +E    ++ L   +LPHL +         D
Sbjct: 318 KGYGLHGRDDTRAYLGEKFRPVLGMPADMPDEAVGTEF-LRKVVLPHLGNQNVTESQDND 376

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------- 383
           KF  +  M  KL+ +V G    D+ D+I  QE++ GG LY  LLK+              
Sbjct: 377 KFNMILFMIRKLYTLVAGDCAPDNPDAISNQEVLLGGFLYGMLLKERLEEWLRSFGPVAR 436

Query: 384 ----------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                           EK   S ++  ++        +I  A+  FL+TGN+ +   + L
Sbjct: 437 DWAFRNQNAPFSDPRFEKEFLSRIVTRTN-------ENIGGALEYFLSTGNLVS--PTGL 487

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
            L Q SG+ ++AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG
Sbjct: 488 DLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDG 547

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
           +PCGLLNHL   C+I+    +  ++ +P V+ +LG+   + V     +++++V LDGRI+
Sbjct: 548 SPCGLLNHLAHKCEIA--TSNLDVSGVPQVISNLGVTSESSVAL---DESVVVQLDGRIL 602

Query: 548 GYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           GY   + A  +   LR  K+ G + +P  LEI Y+  P    G YPG+YLF+   RMLRP
Sbjct: 603 GYCSPKQARMISDTLRYWKVEGHRSLPVELEIGYV--PNSNRGQYPGIYLFSQCARMLRP 660

Query: 607 VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           V  L    ++++G  EQ +M+I     +   G++TH E   T  LS +AN+ P  D NQS
Sbjct: 661 VKYLPLDKLDYVGPLEQPYMEIACLPSDITSGVSTHVEFDPTHILSIVANMTPFSDFNQS 720

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRNMYQCQM KQ MGTP  +  Y+   KLYRLQT  SP  R   Y++  +DNFP G NA+
Sbjct: 721 PRNMYQCQMSKQAMGTPGSSMEYRTDNKLYRLQTGQSPVVRSPLYNSYGLDNFPNGMNAV 780

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAV+SYTGYDM+DAMI+NKS+++RGF  G I+K+    L+        +    G   +  
Sbjct: 781 VAVLSYTGYDMDDAMIINKSAHDRGFGWGTIYKTKIYSLD--------DKESRGRGKARR 832

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER---- 842
           +    FG         +V  +W+               D L  DGL ++GA++ E     
Sbjct: 833 EVSKLFGFAP----GGLVKGEWR---------------DALDEDGLPHIGARVTEGSLVA 873

Query: 843 -------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRI 895
                  DP+ + +   + +    +Y   EE  V+ VR+    +E G        + +RI
Sbjct: 874 AWHTVRFDPVSNSYVNIDRQTHFLKYKDTEEGYVDSVRILG--SETGGDPCQALSVKFRI 931

Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R P +GDKF+SR GQKG+CS  WPA D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 932 PRKPLIGDKFSSRHGQKGVCSQLWPAIDMPFSETGIQPDIIINPHAFPSRMTIGMF 987



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVR 1071


>gi|328770085|gb|EGF80127.1| hypothetical protein BATDEDRAFT_30022 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1147

 Score =  560 bits (1443), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 348/980 (35%), Positives = 518/980 (52%), Gaps = 115/980 (11%)

Query: 41  LSAPS-LKNLTDKNFGKPPDK---QNEFLLTLGAPHIASFDFMLDEG-----LDLAVEDI 91
           +S PS  K L  +     P K   Q   L  L  PHI SF+ +   G     L+  V DI
Sbjct: 1   MSNPSTFKTLERQRHAITPSKTTTQFPKLAKLTDPHILSFNDLFPSGSATGLLEKGVRDI 60

Query: 92  -APIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVA 150
            A + F+    T      K  +       G  G      YP+E R+    Y     + + 
Sbjct: 61  GAVVVFDGQNDTPLSGRNKLEL------WGARGAITTLLYPSECRERGISYKSKMQIRIN 114

Query: 151 WSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           W  +G    +    +G +PIM++S +C+L   +P++++   E  D++GGYF++ G E+L+
Sbjct: 115 WRVNGGPIQSEICGLGSLPIMVRSLKCNLDGKSPSEMVAHHEDADDFGGYFVINGIERLI 174

Query: 211 RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFS 270
           RLLI  RRNHP AI R +++ RG  +S  G+ +R V  D+SA    +H+ T+G     F 
Sbjct: 175 RLLIVPRRNHPTAIIRPSFQKRGPTYSKFGIIMRCVLPDQSAQTITMHYCTDGEVTLRFF 234

Query: 271 HRK------------SMC-----------LLG-------------MMQSLHEEGIHTQHD 294
           H+K            ++C           ++G             +++S     I+    
Sbjct: 235 HKKIEYMVPVVLVMRALCNTSDFEIFERIIMGVYTNTFLIDRVELLLRSFRRYAIYNSTQ 294

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQ 354
           +  + G  F   L      L EV+     L   IL HL D   KF  L +M  KL+ +V 
Sbjct: 295 ALAYIGSKFAVMLDSPEDQL-EVDAGLEFLRRMILVHLTDAKSKFDLLIYMLQKLYSLVS 353

Query: 355 GMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--------KSGTSAVLKE-------SDIYA 399
           G    D+ DS+  QE +  G ++  L+K++        K+  +  +K+       SD   
Sbjct: 354 GDTAPDNPDSLQFQETLLAGHMFSALIKEKLADWLLAIKTTINMDIKKQISKLDFSDKKY 413

Query: 400 AFRASSIESAMTN-------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
             +  S  S M++       FLATGN+ +  N  L L Q SG+ I+AE +N  RY+SHFR
Sbjct: 414 IQKLFSKTSGMSDIGKKIEYFLATGNLISSSN--LDLQQVSGYTIIAEKLNFYRYISHFR 471

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
           ++HRG++F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C+I  ++    ++
Sbjct: 472 SIHRGAFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHTCEI--FLDKIDVS 529

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EK 571
            IPS++ +        ++ +I        LDG+++G+    +  ++   LR  KI G   
Sbjct: 530 HIPSIVAAAEFDSRENIVMTI-------QLDGKVIGWGRTSVVRNIAQTLRDWKIRGINN 582

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
           +P  LEI Y+  P KG G YPGL+LF+ P RM+RPV  LA G+ ++IG FEQV+MDI   
Sbjct: 583 VPLKLEIGYVP-PTKG-GQYPGLFLFSSPARMIRPVKYLATGDTDFIGPFEQVYMDIACM 640

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            ++  PGITTH+E + TD LS +ANL P  D NQSPRNMYQCQMGKQ+MGTP  +  ++ 
Sbjct: 641 KEDVVPGITTHQEFNPTDMLSVVANLTPFSDFNQSPRNMYQCQMGKQSMGTPSQSLHHRT 700

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             KLYRLQT  SP  RP  ++   +D +P G NA+V VISYTGYDMEDA I+ KSS+ERG
Sbjct: 701 DNKLYRLQTGQSPIVRPNLHNDYGLDGYPNGMNAVVCVISYTGYDMEDASIIAKSSHERG 760

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           + +G ++K  +++L   +      T Y             FG V +      +S+K    
Sbjct: 761 YGYGTVYKGEWVDLSDFHRQGDIVTHY-------------FGFVAWNESEPNLSEK---- 803

Query: 812 DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEV 871
                    +AL+  +  DGL  +G +L   DPMY++  +   +     Y G E+  V+ 
Sbjct: 804 ------ALARALQ-FIDLDGLPIIGVRLTRGDPMYAFVDDVTGKVTVKEYKGMEDAYVDQ 856

Query: 872 VRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGL 931
           VR+     + G       +I  RI R P +GDKF+SR GQKG+ S KWP+ D+PF++SG+
Sbjct: 857 VRLIG--DDSGKKPLQKIHIRLRIPRPPLIGDKFSSRHGQKGVISQKWPSIDMPFSESGI 914

Query: 932 VPDIVFNPHGFPSRMTIGFL 951
           +PD++ NPH FPSRMTIG  
Sbjct: 915 IPDVIINPHAFPSRMTIGMF 934



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++G+NY+G E MYSG+ G   +A I+ GVV+YQRLRHMVSDK+Q +
Sbjct: 973  QAGFNYHGNEPMYSGITGQEFKADIYIGVVYYQRLRHMVSDKYQVR 1018


>gi|326474430|gb|EGD98439.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
          Length = 1244

 Score =  560 bits (1443), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 355/1015 (34%), Positives = 520/1015 (51%), Gaps = 160/1015 (15%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEFEIYGKT---- 102
           ++ F  PP  +  +     A  PHI SF+ + ++   L+ A++DI    F I G +    
Sbjct: 20  ERLFRHPPKDKTAYPALAAAIRPHIDSFNALFEDTKVLEAALKDIGIKSF-IDGSSETPE 78

Query: 103 -----------------LKLNIVKAAISEPKVPAGPVGIHFNKY-------YPTEARQTR 138
                            L + I +  + +  +PA       NKY       YP E R+  
Sbjct: 79  EKASRREDGRRAPKRNKLSVRITELFLEKAVLPAS------NKYSTRNREIYPAECRERH 132

Query: 139 SVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWG 198
           + Y G     + +  +        +E+G+VPIM++S RCHL   TP+QL++  E  +E G
Sbjct: 133 ATYRGKLRARLEYRVNNGEWKESVRELGQVPIMIRSNRCHLEKATPSQLVDHKEESEELG 192

Query: 199 GYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLH 258
           GYFIV G+EKL+R+LI  +RN P AI RN+++ RG  ++  GV +RSV+ D+++  NVLH
Sbjct: 193 GYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPDQTSQTNVLH 252

Query: 259 FVTNGSARFMFSHRKS-------MCLLGMMQSLHEE------------------------ 287
           ++ +G+  F FS RK+       M L  ++++   E                        
Sbjct: 253 YLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLVGREGSLGIENTFVTDRVE 312

Query: 288 ---------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-- 336
                    G+H++   + + G  F+  L      + E ++    L   +LPHL +    
Sbjct: 313 LLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMP-EDIPEEDVGTEFLRKIVLPHLGNQNVT 371

Query: 337 -----DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KS 386
                DKF  +  M  KL+++V G    D+ D++  QE++ GG LY  LLK+      KS
Sbjct: 372 ETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYLYGMLLKERLEEWLKS 431

Query: 387 -----------GTSAVLKESDIYAAFRA-------SSIESAMTNFLATGNVSAGKNSTLQ 428
                         A   +      F          +I  AM  FL+TGN+ +   + L 
Sbjct: 432 VGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRTNENIGGAMEYFLSTGNLVS--PTGLD 489

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 490 LQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 549

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNHL   C IS    +  ++ IP VL  LG   +T       E+++ V LDG+I+G
Sbjct: 550 PCGLLNHLAHKCLIS--TSNLDVSGIPGVLAGLG---VTSESSCSIEESIPVQLDGKILG 604

Query: 549 YILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           Y   + + ++   LR  K+ G K IP  LEI Y+  P    G YPG+Y+F+   RM RPV
Sbjct: 605 YCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYV--PCSNGGQYPGVYMFSEAARMYRPV 662

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L    ++++G FEQ +M+I     +   G++TH E   T  LS LAN+ P  D NQSP
Sbjct: 663 KYLPLDKLDYVGPFEQPYMEIACVASDIRNGVSTHIEFDPTHILSILANMTPFSDFNQSP 722

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQMGKQ MGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+V
Sbjct: 723 RNMYQCQMGKQAMGTPGTAIDYRTDNKLYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVV 782

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           AVISYTGYDM+DAMI+NKSS+ERGF +G I+K+    L+        +    G   S   
Sbjct: 783 AVISYTGYDMDDAMIINKSSHERGFGYGTIYKTKIYALD--------DKESRGRGKSKRA 834

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE------ 841
               FG         +V  +W+ +               L  DGL ++GAK++E      
Sbjct: 835 ITKLFGFAP----GGLVKAEWKAQ---------------LDEDGLPHIGAKVSEGSLVGA 875

Query: 842 -----RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
                 DP    +   + +    +Y   EE  ++ VR+    +E G+       I YR+ 
Sbjct: 876 WHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLG--SETGNEVCQAVSIKYRVP 933

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R P +GDKF+SR GQKG+ S  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 934 RRPVIGDKFSSRHGQKGVLSQLWPATDMPFSESGIQPDVIINPHAFPSRMTIGMF 988



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1027 KAGYNFHGNEPMYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVR 1072


>gi|452981615|gb|EME81375.1| hypothetical protein MYCFIDRAFT_58897 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 1209

 Score =  560 bits (1442), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 355/996 (35%), Positives = 522/996 (52%), Gaps = 140/996 (14%)

Query: 54  FGKPPDKQNEFLLTLG-APHIASFDFMLDEGLDL--AVEDIAP--------IEFEIYGKT 102
           F  PP K     L     PH+ SF+ +  E   L   ++DI          +E ++    
Sbjct: 26  FRNPPKKSAYPQLQAAIKPHVDSFNAIFAENGQLMHGLKDIGTKTFLDGNGLEADVRRNR 85

Query: 103 LKLNIVKAAISEPKVPAG-PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
           L++ +    +   ++P+   V     +  P E R++   Y G F   + +  +  A    
Sbjct: 86  LQVRVKDVFLERSQLPSSNKVEATKREILPVERRESHKSYRGRFRGRLEYRVNDGAWKQT 145

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
            ++ G +PIML+S RCHL  L+P +L+ R E  DE GGYFI+ G EKL+R+LI NRRN P
Sbjct: 146 VRDFGELPIMLRSNRCHLEALSPKELVNRREESDELGGYFIINGVEKLIRMLIVNRRNFP 205

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL---L 278
           +AI+R ++ NRG  ++  GV IRSV+ D+++  NVLH++++G+  F FS RK+  L   L
Sbjct: 206 MAIERPSFVNRGAAYTKYGVQIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVL 265

Query: 279 GMMQSLHE-------EG-------------------------------IHTQHDSKVFFG 300
            ++++L E       EG                               IH++  ++ + G
Sbjct: 266 MILKALTETNDRQIFEGLVGPAGGKDLESKQFVSDRVELLLRTYKAYNIHSKAKTRAYLG 325

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFHVV 353
             F+  L       +E      +L   +LPHL  Y        DK   L  M  KL+ +V
Sbjct: 326 SKFRVVLGMPDDATDEA-CGTELLRKIVLPHLGCYDVTEANDADKARMLLFMIRKLYALV 384

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------------------KSGTSAVL 392
           +G   +D+ D++  QEI+  G+LY  ++K+                       S TSA  
Sbjct: 385 EGECAVDNPDAVQNQEILLPGALYGMIVKERIEEWLNSIGAQSREYGRTNNWPSFTSAEF 444

Query: 393 KESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSH 450
                    R ++  I   +  F+ATGN+ +   S L L Q SGF ++AE IN  R++SH
Sbjct: 445 DRDFAPKVIRKTNENIGQGLDYFMATGNLVS--PSGLDLQQVSGFTVVAEKINFYRFISH 502

Query: 451 FRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
           FR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C++     S  
Sbjct: 503 FRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKVE--TSSTD 560

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG- 569
           ++ +P+++  +G   ++   +     +++V LDGR++GY   + A ++   LR  K+ G 
Sbjct: 561 VSHVPALVAQIG---VSSTSEPTLHDSVVVQLDGRVLGYCSPKQAKTIADTLRYWKVEGT 617

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
             +PK LE+ Y+  P    G YPG+Y+F+   RMLRPV  L     +++G FEQ +M I 
Sbjct: 618 HNVPKELEVGYV--PLSNGGQYPGVYMFSQAARMLRPVKYLPLDKEDFVGPFEQPYMSIA 675

Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
            T  E   G TTH E   T+ LS +AN  P  + NQSPRNMYQCQMGKQTMGTP    +Y
Sbjct: 676 CTEPEISSGDTTHVEYDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGTALKY 735

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +   K YRLQT  +P  R   ++   +DNFP GTNA+VAVISYTGYDM+DAMILNKS++E
Sbjct: 736 RTDNKSYRLQTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHE 795

Query: 750 RGFAHGCIFKSMFIEL-ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
           RGF +G I+K+  I+L E      G  T+ + + G         G++  Q         W
Sbjct: 796 RGFGYGTIYKAKKIDLAEENKAARGRSTVVTHMFGFAPT-----GIIKAQ---------W 841

Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK--------ESENRYVTC- 859
           +               + L  DG   VG K+ E D + +++         E EN+     
Sbjct: 842 R---------------NTLDDDGFAQVGVKVKEGDAIAAFYTVVKNPLTGEYENKDGVTH 886

Query: 860 --RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG--YRIQRNPTVGDKFASRAGQKGIC 915
             +Y   EE  VE +++     E GS  P C  I   +RI R P +GDKF+SR GQKG+ 
Sbjct: 887 IQKYKEAEEGYVEEIKLIG--NETGSNEP-CQAISMRFRIPRPPVIGDKFSSRHGQKGVM 943

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           S KWP  D+PFT+SG+ PD++ NPH FPSRMTIG  
Sbjct: 944 SQKWPTVDMPFTESGMQPDVIINPHAFPSRMTIGMF 979



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYG E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +      P        
Sbjct: 1021 AGYNYYGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKFQVRTTGPVTPLTGQPIKG 1080

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                G + VG    ERD + ++      ++R + C    K  +C
Sbjct: 1081 RAKGGGIRVGEM--ERDALIAHGTSFLLQDRLMNCSDYTKASIC 1122


>gi|358398287|gb|EHK47645.1| hypothetical protein TRIATDRAFT_132650 [Trichoderma atroviride IMI
           206040]
          Length = 1230

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 342/996 (34%), Positives = 526/996 (52%), Gaps = 141/996 (14%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFD--FMLDEGLDLAVEDIAPIEFEIY---------- 99
           F  PP   + +  L L   PHI SF+  F  D    L    +A I  +++          
Sbjct: 23  FRNPPTDHSAYPALQLAVNPHIESFNAIFRGDGKPGLLAHGLADIGTKVFLDGNDRADPE 82

Query: 100 GKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
           G+  L + I    + +P+VP         + +P E R+  + Y G  + T  +  +G   
Sbjct: 83  GRNRLNIRIKDVTLQKPQVPPSNKLALNREIFPAECRERHATYRGKLSATFEYDINGGDT 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             FT+E+G+VPIM+KS RCHL N +P  L+ R E  +E GGYFIV G+EK++RLL  N+R
Sbjct: 143 IEFTRELGQVPIMIKSNRCHLENNSPDLLVRRKEESEELGGYFIVNGNEKIIRLLQMNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R ++ NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+  L+
Sbjct: 203 NFPMAINRPSFTNRGAGYTTYGIILRSVRPDETSQTNVLHYLKDGNVTFRFSWRKNEYLI 262

Query: 279 GMMQSLHE----------EGI------------------------------HTQHDSKVF 298
            ++  L            EG+                              +++ +++ +
Sbjct: 263 PVIMILKALVETNDREIFEGLIGPMGSKAAKNTFLTDRVELLLRTYKAYRLYSKSETRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            GQ F+  L      +++ E+    L   +  HL +         DKF  +  M  KL+ 
Sbjct: 323 LGQKFRVVLGVP-ETMSDYEVGTEFLRRIVCVHLGNVDVTEKQDLDKFQMVLFMIRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG----------------------TS 389
           +  G   +D+ D+I  QEI+ GG LY Q+LK+                          TS
Sbjct: 382 LAAGECAVDNPDAIQNQEILLGGFLYGQILKERLDDFLGTSVRGAIRDYLRRHPAVNFTS 441

Query: 390 AVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
              K+      FR S+  I + +  FL+TGN+ +   S L L Q +GF ++AE +N +R+
Sbjct: 442 EEFKKEFPGGIFRKSNENIANGLEYFLSTGNLVS--PSGLDLQQTAGFTVVAEKLNFLRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYI 506
           +SHFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH+T  C+I ++++
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHMTHKCKIMTDHL 559

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++ +P+++  LG +  +    +  ++++++MLDG+++G+   + +  +   LR  K
Sbjct: 560 D---VSNVPALVAELGAVETS---SASTDESVVIMLDGKVIGWSTPKESLRIADCLRYWK 613

Query: 567 IVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G  ++P  LEI Y+  P    G YPGLYL + P RM+RPV  L     +++G  EQ +
Sbjct: 614 VEGTHRVPLQLEIGYV--PPSNGGSYPGLYLSSTPARMVRPVKYLPLQKEDFVGPHEQPY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G++TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP  
Sbjct: 672 MSIAVVPQEIESGVSTHVEYDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             R++   K YR+QT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 AIRHRTDNKSYRIQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGF HG ++K+  I L+        +++              FG   +  +     
Sbjct: 792 SAHERGFGHGTVYKTKKITLKDDSRTRAAKSVVK-----------MFGFAPHSYV----- 835

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC------ 859
                         + A +  L  DGL +VG  + E D + +Y   + +           
Sbjct: 836 --------------SAAYQGMLDDDGLPHVGRMVKEDDVLCAYHTVTPDYNGNLVNLDGI 881

Query: 860 ----RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGIC 915
               +Y   E   +E VR+     E GS       I  RI R+P +GDKF+SR GQKG+ 
Sbjct: 882 THYEKYKDSEVGFIEEVRLIGA--ESGSEPLQTISIKIRIPRSPVIGDKFSSRHGQKGVL 939

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           S KWPA D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 940 SQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMF 975



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++G+NY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGFNYHGNEPMYSGITGEELGADIYVGVVYYQRLRHMVNDKYQVR 1059


>gi|327302082|ref|XP_003235733.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
 gi|326461075|gb|EGD86528.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
          Length = 1243

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 354/1015 (34%), Positives = 519/1015 (51%), Gaps = 160/1015 (15%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEFEIYGKT---- 102
           ++ F  PP  +  +     A  PHI SF+ + ++   L+ A++DI    F I G +    
Sbjct: 19  ERLFRHPPKDRTAYPALAAAIRPHIDSFNALFEDTKVLEAALKDIGIKSF-IDGSSGTPE 77

Query: 103 -----------------LKLNIVKAAISEPKVPAGPVGIHFNKY-------YPTEARQTR 138
                            L + I +  + +  +PA       NKY       YP E R+  
Sbjct: 78  EKASRREDGRRAPKRNKLSVRITELFLEKAVLPAS------NKYSTRNREIYPAECRERH 131

Query: 139 SVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWG 198
           + Y G     + +  +        +E+G+VPIM++S RCHL   TP+QL++  E  +E G
Sbjct: 132 ATYRGKLRARLEYRINNGEWKESVRELGQVPIMIRSNRCHLEKATPSQLVDHKEESEELG 191

Query: 199 GYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLH 258
           GYFIV G+EKL+R+LI  +RN P  I RN+++ RG  ++  GV +RSV+ D+++  NVLH
Sbjct: 192 GYFIVNGNEKLIRMLIVGKRNFPTGIIRNSFQKRGSAYTKFGVQLRSVRPDQTSQTNVLH 251

Query: 259 FVTNGSARFMFSHRKS-------MCLLGMMQSLHEE------------------------ 287
           ++ +G+  F FS RK+       M L  ++++   E                        
Sbjct: 252 YLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLVGREGSLGIENTFITDRVE 311

Query: 288 ---------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-- 336
                    G H++   + + G  F+  L        E ++    L   +LPHL +    
Sbjct: 312 LLLRTYKAYGAHSRSRCRAYLGSKFRFVLGMP-EDTPEEDVGTEFLRKIVLPHLGNQNVT 370

Query: 337 -----DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KS 386
                DKF  +  M  KL+++V G    D+ D++  QE++ GG LY  LLK+      KS
Sbjct: 371 ETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYLYGMLLKERLEEWLKS 430

Query: 387 -----------GTSAVLKESDIYAAFRA-------SSIESAMTNFLATGNVSAGKNSTLQ 428
                         A   +      F          +I  AM  FL+TGN+ +   + L 
Sbjct: 431 VGPMVRDWRMRNQDAKFTDPKFEREFLTKIIGRTNENIGGAMEYFLSTGNLVS--PTGLD 488

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 489 LQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 548

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNHL   C IS    +  ++ IP VL  LG   +T       E+++ V LDG+I+G
Sbjct: 549 PCGLLNHLAHKCLIS--TSNLDVSGIPGVLAELG---VTSESSCSIEESIPVQLDGKILG 603

Query: 549 YILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           Y   + + ++   LR  K+ G +KIP  LEI Y+  P    G YPG+Y+F+   RM RPV
Sbjct: 604 YCTPKQSRTIADTLRYWKVQGHKKIPVELEIGYV--PSSNGGQYPGVYMFSEAARMYRPV 661

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L    ++++G+FEQ +M+I     +   G++TH E   T  LS LAN+ P  D NQSP
Sbjct: 662 KYLPLDKLDYVGSFEQPYMEIACVASDIRNGVSTHIEFDPTHILSILANMTPFSDFNQSP 721

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQMGKQ MGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+V
Sbjct: 722 RNMYQCQMGKQAMGTPGTAIDYRTDNKLYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVV 781

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           AVISYTGYDM+DAMI+NKSS+ERGF +G I+K+    L+        +    G   S   
Sbjct: 782 AVISYTGYDMDDAMIINKSSHERGFGYGTIYKTKIYALD--------DKESRGRGKSKRA 833

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE------ 841
               FG         +V  +W+ +               L  DGL ++GAK++E      
Sbjct: 834 ITKLFGFAP----GGLVKAEWKAQ---------------LDEDGLPHIGAKVSEGSLVGA 874

Query: 842 -----RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
                 DP    +   + +    +Y   EE  ++ VR+    +E G+       I YR+ 
Sbjct: 875 WHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLG--SETGNEVCQAVSIKYRVP 932

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R P +GDKF+SR GQKG+ S  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 933 RRPVIGDKFSSRHGQKGVLSQLWPATDMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYIGVVYYQRLRHMVNDKFQVR 1071


>gi|400595618|gb|EJP63410.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
          Length = 1229

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 355/1000 (35%), Positives = 535/1000 (53%), Gaps = 149/1000 (14%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFDFML-DEG----LDLAVEDIAPIEF----EIYG-- 100
           F  PP     +  L L   PHI SF+ +  D+G    LD A+ DI    F    E  G  
Sbjct: 23  FRNPPKDHTAYPALQLAVDPHIESFNCLFRDDGKPSLLDHAMADIGTKTFFDGDERKGPE 82

Query: 101 --KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               L + I    +  P+VP         + +P E R+    Y G  + T  ++ +G   
Sbjct: 83  GKNKLNVRIRNVMLHRPQVPPSNKMAKNREIFPAECRERHVTYRGRLSATFEYNINGGDS 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             F +++G++PIMLKS RCHL N +PA L++R E  +E GGYF+V G EK++R+L  N+R
Sbjct: 143 HEFVRDLGQIPIMLKSNRCHLENNSPALLVQRKEESEELGGYFVVNGIEKIIRMLQLNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R +++NRG  +S  G+ IRSV+ DE++  NVLH++ +G+  F FS RK+  L+
Sbjct: 203 NFPMAINRPSFQNRGPGYSPYGIIIRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLV 262

Query: 279 G---MMQSLHEE-------------------------------------GIHTQHDSKVF 298
               +M++L E                                      G++++ +++ +
Sbjct: 263 PVIMIMKALVETNDREIFEGLIGPMGSKATGNTFLTDRVELLLRTYKSYGLYSKSETRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL---------DDYWDKFLCLSHMTCKL 349
            GQ F+  L      +++ ++    L    L HL         DD  DKF  L  M  KL
Sbjct: 323 LGQKFRVVLGVP-ETMSDYDVGTEFLRRIALVHLGNVKVTEKQDD--DKFKMLLFMVRKL 379

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS-----GTSAVLKE---------- 394
           + +V G   +D+ D+I  QEI+ GG LY Q+LK+        G    L+E          
Sbjct: 380 YALVAGECAVDNPDAIQNQEILLGGFLYGQILKERLDEFLGVGVRLSLREYFRRHPSVTF 439

Query: 395 -SDIY------AAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
            S+ +      A FR ++  + +++  FL+TGN+ +   S L L Q +GF ++AE +N +
Sbjct: 440 HSEEFRKEFPTAIFRKANENLGTSIEYFLSTGNLVS--PSGLDLQQVAGFTVVAEKLNFL 497

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SE 504
           R+++HFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I ++
Sbjct: 498 RFIAHFRMVHRGAFFAQLKTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHLAHKCKIMTD 557

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
           +I    ++++P ++  LG +  +    +   +++++MLDG+++G+   + +  +   LR 
Sbjct: 558 HID---VSKVPGLVAELGAVDTSTASTA---ESVVIMLDGKVLGWCKPKESLRMADCLRH 611

Query: 565 LKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
            K+ G + +P  LEI Y+  P    G YPG+Y+ + P RM+RPV  L     + +G +EQ
Sbjct: 612 WKVEGNRGVPLHLEIGYV--PPSTGGSYPGIYMTSTPSRMIRPVKYLPLQKEDMVGPYEQ 669

Query: 624 VFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
            +M I +  +E   G++TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP
Sbjct: 670 PYMSIAVVPEEIESGLSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTP 729

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
                ++   K YRLQT  +P  R   ++    DNFP GTN IVAVISYTGYDM+DAMI+
Sbjct: 730 GTALVHRTDNKSYRLQTGQTPIVRAPLHNAYGFDNFPNGTNVIVAVISYTGYDMDDAMII 789

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETM--------YSGVDGSMMQAQIFFGVV 795
           NKS++ERGF HG ++K+  I L+       ++++        +S V  S        G+ 
Sbjct: 790 NKSAHERGFGHGTVYKTKKISLKDDSRTRASKSVTKAFGFAPHSYVSASYQGMLDDDGLP 849

Query: 796 HYQRLRHM--VSDKWQ--TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE 851
           H  RL     V   W   T DY G         D +  DG+ +           Y  +K+
Sbjct: 850 HVGRLVQEGDVICAWHTVTPDYRG---------DLVNLDGITH-----------YEKYKD 889

Query: 852 SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
            E  +            VE VR+     + GS       I +RI R P +GDKF+SR GQ
Sbjct: 890 GETGF------------VEEVRLIGA--DSGSELLQTISIKFRIPRAPLIGDKFSSRHGQ 935

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG+CS KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 936 KGVCSQKWPAIDMPFSESGMQPDVIINPHAFPSRMTIGMF 975



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGYNYHGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKFQVR 1059


>gi|242777481|ref|XP_002479042.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218722661|gb|EED22079.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 1264

 Score =  557 bits (1435), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 344/1020 (33%), Positives = 519/1020 (50%), Gaps = 168/1020 (16%)

Query: 51  DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIA-------------- 92
           +K F  PP  ++ + +   A  PHI SF+ +  E   ++ A+ED+               
Sbjct: 20  EKLFRNPPKDRSAYPMLQAAIRPHIDSFNALFGESKIMEHALEDMGIKVFLDGDAETPEQ 79

Query: 93  -----------PIEFEIYGKTLKLNIVKAAI--SEPKVP-AGPVGIHFNKYYPTEARQTR 138
                      P+   +  +  +L + KA +  +   VP        +   YP E R+  
Sbjct: 80  RSARKARGEAPPVRNRLSLRITELFLDKAVLPPTNKFVPRQTTANADYRNIYPAECRERH 139

Query: 139 SVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWG 198
           + Y G     + +  +        +E+G+VP+ML+S RCHL + +P QL++  E  +E G
Sbjct: 140 ATYRGRLRARLQYQVNNGEWHESVRELGQVPLMLRSNRCHLESFSPQQLVDHKEESEELG 199

Query: 199 GYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLH 258
           GYFIV G+EKL+R+LI  +RN P+AI R +++ RG  F+  GV IRS + D++   NVLH
Sbjct: 200 GYFIVNGNEKLIRMLIMPKRNFPMAINRPSFQKRGAGFTTFGVQIRSARPDQTTQTNVLH 259

Query: 259 FVTNGSARFMFSHRKSMCLLGMMQSLHE----------EGI------------------- 289
           ++++G+  F FS RK   L+ +M  L            EGI                   
Sbjct: 260 YLSDGNVTFRFSWRKQEYLVPVMMILKALVETNDREIFEGIVGNASTKGPANTFVTDRVE 319

Query: 290 -----------HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY--- 335
                      +++ D++ + G+ F+  L       +E E     L   +LPHL +    
Sbjct: 320 LLLRTFKGYKIYSRSDARAYLGKKFRPVLFAPATWTHE-ECGAEFLRKIVLPHLGNQNVT 378

Query: 336 ----WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------- 383
               +DKF  +  M  KL+  V G    D+ D+I  QE+M GG +Y  LLK+        
Sbjct: 379 TTQDYDKFKLMLFMIRKLYAFVAGDCAADNPDAISNQEVMLGGYVYGMLLKERLEEWLLS 438

Query: 384 ----------------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSA 421
                                 EK     V+K ++        +I  A+  FL+TGN+ +
Sbjct: 439 FGRLVRDWSYRGGNLKFTDPSFEKDFIGKVIKRTN-------ENIGGALEYFLSTGNLVS 491

Query: 422 GKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
              + L + QASGF ++AE IN  R+++HFR VHRG++F +++++  R+L  ++WGF+CP
Sbjct: 492 --PTGLDMQQASGFTVVAEKINFYRFIAHFRMVHRGTFFAQLKTTAVRKLLPESWGFMCP 549

Query: 482 VHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVM 541
           VHTPDG+PCGLLNHL   C I+       ++ IP VL  LG   +     +   +++ V 
Sbjct: 550 VHTPDGSPCGLLNHLAHKCLIA--TSDLDVSHIPRVLAQLG---IKSEASAEVTESVCVQ 604

Query: 542 LDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           L+GR+VGY   + A  +   LR  K+ G   IPK LEI Y+  P    G YPG+Y+ + P
Sbjct: 605 LNGRVVGYCSPKQAKMIHDTLRFWKVEGSHDIPKELEIGYV--PTSNGGQYPGIYMSSQP 662

Query: 601 GRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPM 660
            RM RPV  LA   ++++G FEQ FM+I    ++   G++TH E + T+ LS +AN+ P 
Sbjct: 663 ARMYRPVKYLALDKLDYVGPFEQPFMEIACLEEDIRSGLSTHIEFTPTNILSIIANMTPF 722

Query: 661 PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP 720
            D NQSPRNMYQCQM KQTMGTP  ++ Y+   KLYRLQT  +P  RP  Y+   +DNFP
Sbjct: 723 SDNNQSPRNMYQCQMSKQTMGTPGTSFAYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFP 782

Query: 721 MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG 780
            G NA+VA+++YTGYDM+DAM++NKSS+ERGF HG I+K+ F         Y  +   S 
Sbjct: 783 NGANAVVAILAYTGYDMDDAMVINKSSHERGFGHGTIYKTKF---------YNLDDKDSR 833

Query: 781 VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLN 840
            + S  +    FG      ++                         L  DGL + GAK+ 
Sbjct: 834 RNKSKREISKLFGFAPGSEIK-------------------AEYRATLDEDGLPHPGAKIK 874

Query: 841 ERDPMYSYW----KESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
           E   + +++        + Y+         +Y   EE  ++ VR+     E G+      
Sbjct: 875 EGSYVAAWYTVRYDAGSDSYINVDGITHFLKYKDAEEGYIDTVRLVG--NENGNEPLQAI 932

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            + +R+ R P +GDKF+SR GQKG+CS  WP  D+PF++SG+ PD++ NPH FPSRMTI 
Sbjct: 933 SVKFRVPRRPIIGDKFSSRHGQKGVCSQLWPQIDMPFSESGIQPDLIINPHAFPSRMTIA 992



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY+G E MYSG+ G    A I+ GVVHYQRLRHMV+DK+Q +
Sbjct: 1033 KAGYNYHGNEPMYSGITGKEFAADIYLGVVHYQRLRHMVNDKFQVR 1078


>gi|119593997|gb|EAW73591.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_b [Homo
           sapiens]
          Length = 824

 Score =  557 bits (1435), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 331/882 (37%), Positives = 469/882 (53%), Gaps = 120/882 (13%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
            DS++ QE++T G L+L  LK++  G               TS  +   ++   F     
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID 425

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           +        ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
           +  R+L  ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ 
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
           P+         +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +  
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
             K   LYPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     LS +AN IP                         L ++ +   KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFS----------------------VLTYQDRSDNKLYRLQTPQS 697

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 698 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 757

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L        +E +  G D S++                           FG  P +  +
Sbjct: 758 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 781

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
             KL  DGL ++GAKL   DP YSY   +        Y  KE
Sbjct: 782 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 823


>gi|326481496|gb|EGE05506.1| DNA-directed RNA polymerase I subunit beta rpa2 [Trichophyton
           equinum CBS 127.97]
          Length = 1090

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 354/1009 (35%), Positives = 516/1009 (51%), Gaps = 160/1009 (15%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEFEIYGKT------- 102
           F  PP  +  +     A  PHI SF+ + ++   L+ A++DI    F I G +       
Sbjct: 23  FRHPPKDKTAYPALAAAIRPHIDSFNALFEDTKVLEAALKDIGIKSF-IDGSSETPEEKA 81

Query: 103 --------------LKLNIVKAAISEPKVPAGPVGIHFNKY-------YPTEARQTRSVY 141
                         L + I +  + +  +PA       NKY       YP E R+  + Y
Sbjct: 82  SRREDGRRAPKRNKLSVRITELFLEKAVLPAS------NKYSTRNREIYPAECRERHATY 135

Query: 142 SGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYF 201
            G     + +  +        +E+G+VPIM++S RCHL   TP+QL++  E  +E GGYF
Sbjct: 136 RGKLRARLEYRVNNGEWKESVRELGQVPIMIRSNRCHLEKATPSQLVDHKEESEELGGYF 195

Query: 202 IVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVT 261
           IV G+EKL+R+LI  +RN P AI RN+++ RG  ++  GV +RSV+ D+++  NVLH++ 
Sbjct: 196 IVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPDQTSQTNVLHYLN 255

Query: 262 NGSARFMFSHRKS-------MCLLGMMQSLHEE--------------------------- 287
           +G+  F FS RK+       M L  ++++   E                           
Sbjct: 256 DGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLVGREGSLGIENTFVTDRVELLL 315

Query: 288 ------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW----- 336
                 G+H++   +   G  F+  L      + E ++    L   +LPHL +       
Sbjct: 316 RTYKAYGVHSRSKCRAHLGSKFRFVLGMP-EDIPEEDVGTEFLRKIVLPHLGNQNVTETQ 374

Query: 337 --DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KS--- 386
             DKF  +  M  KL+++V G    D+ D++  QE++ GG LY  LLK+      KS   
Sbjct: 375 DNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYLYGMLLKERLEEWLKSVGP 434

Query: 387 --------GTSAVLKESDIYAAFRA-------SSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                      A   +      F          +I  AM  FL+TGN+ +   + L L Q
Sbjct: 435 MVRDWRMRNQDAKFTDPKFEREFLTRIIGRTNENIGGAMEYFLSTGNLVS--PTGLDLQQ 492

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
            SG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCG
Sbjct: 493 PSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCG 552

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           LLNHL   C IS    +  ++ IP VL  LG   +T       E+++ V LDG+I+GY  
Sbjct: 553 LLNHLAHKCLIS--TSNLDVSGIPGVLAGLG---VTSESSCSIEESIPVQLDGKILGYCT 607

Query: 552 DQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
            + + ++   LR  K+ G K IP  LEI Y+  P    G YPG+Y+F+   RM RPV  L
Sbjct: 608 PKQSRAIADTLRYWKVQGHKQIPVELEIGYV--PCSNGGQYPGVYMFSEAARMYRPVKYL 665

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
               ++++G FEQ +M+I     +   G++TH E   T  LS LAN+ P  D NQSPRNM
Sbjct: 666 PLDKLDYVGPFEQPYMEIACVASDIRNGVSTHIEFDPTHILSILANMTPFSDFNQSPRNM 725

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQCQMGKQ MGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VAVI
Sbjct: 726 YQCQMGKQAMGTPGTAIDYRTDNKLYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVI 785

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           SYTGYDM+DAMI+NKSS+ERGF +G I+K+    L+        +    G   S      
Sbjct: 786 SYTGYDMDDAMIINKSSHERGFGYGTIYKTKIYALD--------DKESRGRGKSKRAITK 837

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE--------- 841
            FG         +V  +W+ +               L  DGL ++GAK++E         
Sbjct: 838 LFGFAP----GGLVKAEWKAQ---------------LDEDGLPHIGAKVSEGSLVGAWHT 878

Query: 842 --RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
              DP    +   + +    +Y   EE  ++ VR+    +E G+       I YR+ R P
Sbjct: 879 VQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLG--SETGNEVCQAVSIKYRVPRRP 936

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
            +GDKF+SR GQKG+ S  WPA D+PF++SG+ PD++ NPH FPSRMTI
Sbjct: 937 VIGDKFSSRHGQKGVLSQLWPATDMPFSESGIQPDVIINPHAFPSRMTI 985


>gi|345564896|gb|EGX47854.1| hypothetical protein AOL_s00083g9 [Arthrobotrys oligospora ATCC
           24927]
          Length = 1189

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 344/973 (35%), Positives = 521/973 (53%), Gaps = 105/973 (10%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAP-IEFEI------- 98
           +K F  PP  +  F  L     PH+ S++ +  EG  L  A+ DI     F+        
Sbjct: 25  EKRFRNPPADKTAFPALNEAVRPHVDSWNAVFREGGCLHQAIADIGERTVFDRLDGNAET 84

Query: 99  -YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            YG  L + I    + +  + +        + YP E R+  S Y G   + + +  +   
Sbjct: 85  GYGNKLTVRIANYYLGKSMLSSRDKTAMKREIYPAECRERHSSYRGQLQLELQYKVNNGD 144

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                ++ G +P+M+   RCHL +++P  L++  E  +E GGYFIV G+EKLVR+LI NR
Sbjct: 145 WQKEYRDCGLLPLMVMGNRCHLESMSPRSLVDHKEESEEIGGYFIVSGNEKLVRMLIVNR 204

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN+ +A+ R+++  RG  ++++GV IR V+ D+S   NV+H++++G+  F FS RK   L
Sbjct: 205 RNYAMAVIRSSYAKRGPSYTNMGVQIRCVRPDQSCMTNVIHYLSDGNITFRFSWRKREYL 264

Query: 278 LGMMQSLHE----------EGI---------------------------HTQHDSKVFFG 300
           + +M  L            EGI                           +++H++  + G
Sbjct: 265 VPVMMILKALVDTNDREIYEGIVGLDQREDTFLTDRVELLLRTYKAYNLYSRHETLAYLG 324

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
             F+  +Q     +++VE+    L   +L +L+D  DK   L  M  KL+ +V G    D
Sbjct: 325 DKFRIVMQVS-PDVSDVEVGKLFLKRIVLVYLNDDGDKQRQLLFMIKKLYSLVAGTCAAD 383

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------------- 404
           + D+    E++ GG LY Q+LK++       ++    SD+    +               
Sbjct: 384 NVDAAQHHEVLLGGFLYGQILKEKFEEYLLNIRSQVRSDLMGGAKVEFGSPQYIRKMLGK 443

Query: 405 ---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
               I  ++  FL+TGN+S+   S L L Q +GF ++AE +N  RY+SHFR VHRGS+F 
Sbjct: 444 VNERIGESLHYFLSTGNLSS--PSGLDLQQTTGFTVVAEKLNFYRYISHFRMVHRGSFFA 501

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
           +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+        +Q+  ++++L
Sbjct: 502 QLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCRIATITSDT--SQVGPLVLTL 559

Query: 522 GMLPLTPVIQSIPEQA-LMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIV 579
           G+   +  +  +P  A L V LDGRI+G+   + A  +   LR  K+ G   +P  LEI 
Sbjct: 560 GVH--SAKVLPVPTDATLSVQLDGRILGWCSPRDARRVAESLRFYKVSGTHNVPLDLEIG 617

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
           Y+  P    G YPG+YLF+   RM+RPV  L     +++G FEQ F++I +T  E   G 
Sbjct: 618 YV--PTSNGGQYPGVYLFSQEARMIRPVKYLPLDKEDFVGPFEQPFLNIAVTDPEIKSG- 674

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            +H E   T+ LS +AN+ P  D NQSPRNMYQCQMGKQTMGTP    R++   K+YRLQ
Sbjct: 675 DSHVEFDPTNILSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKMYRLQ 734

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           T  SP  R   Y+T  +DNFP G NA+VAVI+YTGYDM+DAMI+NKS++ERGF +G ++K
Sbjct: 735 TGQSPVVRAPLYNTYGLDNFPNGMNAVVAVIAYTGYDMDDAMIINKSAHERGFGYGTVYK 794

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIF-FGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           +                 Y   + S  ++ +  FG   +             K    +D 
Sbjct: 795 T---------------EKYDLAEKSKSKSPVLAFG---WGWAAIGADAAALAKYKAMKDK 836

Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
            ++ L+D    DGL  VG K+ E  P+  Y           +Y G E+  +E VR+  G 
Sbjct: 837 YSETLDDM---DGLPMVGQKIVEGQPVAVYHNMGTGETFFFKYKGSEDAYIEEVRL-LGN 892

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
             G S+    + + +RI R+P +GDKF+SR GQKG+CS KWPA D+PF++SG+ PD++ N
Sbjct: 893 DVGDSICQAIS-VKFRITRSPLIGDKFSSRHGQKGVCSQKWPAVDMPFSESGIQPDVIIN 951

Query: 939 PHGFPSRMTIGFL 951
           PH FPSRMTIG  
Sbjct: 952 PHAFPSRMTIGMF 964



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNYYG E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1004 AGYNYYGNEPMYSGITGQEFHADIYLGVVYYQRLRHMVNDKYQVR 1048


>gi|300120856|emb|CBK21098.2| unnamed protein product [Blastocystis hominis]
 gi|300175006|emb|CBK20317.2| unnamed protein product [Blastocystis hominis]
          Length = 1151

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 343/962 (35%), Positives = 505/962 (52%), Gaps = 117/962 (12%)

Query: 55  GKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISE 114
           G  P + +E L  L   HI S++FMLD+GL LAV DI P+E E         +++  I +
Sbjct: 25  GSIPKEDSERLKDLVRFHIESYNFMLDKGLSLAVRDIFPLEVE---NPDNKQVLRIWIQD 81

Query: 115 PKV--PAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIML 172
            K+  P    G    +  P E R+    Y+ P    VA   +        + +G++PIM+
Sbjct: 82  VKIGYPIKEDGSSETRLLPHECRERGISYTSPLIAYVAHQVNDGQIVVTERNLGQLPIMV 141

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
            S RCHL  +TPA+ +  GE   E GGYFI  G E+++RLL   RR+  +A+ R ++  R
Sbjct: 142 GSNRCHLSRMTPAERVNCGEEVYELGGYFICNGLERMIRLLQVTRRHIIVALDRPSFTKR 201

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS------MCLLGMMQSLHE 286
           G  ++ LG  ++ V+ D S+    LH++ +G     +  RK       + +L  ++   +
Sbjct: 202 GPEYTSLGCQMKCVREDMSSMTVTLHYLRDGRCTLRWFIRKQEFLVPVVLILKALKDCSD 261

Query: 287 EGIH------------------------------TQHDSKVFFGQIFKEKLQYDLRHLNE 316
             I+                              T+ +   + G  F+  L    R+ ++
Sbjct: 262 REIYEQLMRGDSNNTFLSDRLELLLRESKNMHLTTRRECLAYLGSRFRILLYMSSRY-SD 320

Query: 317 VEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL 376
           VE+ + +L   IL HL     KF  L  M  KL+ +    +  D+ DS+M  E++ GG L
Sbjct: 321 VEVGEELLKRYILVHLKSNEAKFALLLEMISKLYKLANKEIPPDNADSLMNHELLLGGHL 380

Query: 377 YLQLLKKEKSGTSAVLKES------------DIY-------AAFRASSIESAMTNFLATG 417
               LK++       ++++            D+Y       A  R S I       LATG
Sbjct: 381 MCMFLKEKLEEFLIGVRQNIAREVDRHKEKIDLYDTAWIKKALDRQSDIGKKAYYLLATG 440

Query: 418 NVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWG 477
           N+ +  ++ L L QA+G+ I+AE +N  RY+SHFR+VHRG +F EM++++PR+L  D+WG
Sbjct: 441 NIIS--STGLDLQQAAGYTIVAEKLNHWRYLSHFRSVHRGQFFTEMKTTQPRKLLPDSWG 498

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPL-TPVIQSIPE 535
           F+C VHTPDG PCGLLNHLT  C I+ + +P+  LA++     +LG++P  +P++     
Sbjct: 499 FLCCVHTPDGAPCGLLNHLTATCSITTDVVPAPQLARL---CQALGLVPADSPLVYG--N 553

Query: 536 QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLY 595
             + V  +G+++G +L   A +   +LR+LK+ G K+P  LEIV +   E+G G +P +Y
Sbjct: 554 HYVPVFFNGQLLGRVLAAQAAAFCDQLRLLKLDGAKLPACLEIVCVPAGEQG-GPWPCVY 612

Query: 596 LFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLA 655
           L T   RM RPV +L  G  EWIG  EQV+++I    ++   G+TTH E+S  + LS +A
Sbjct: 613 LSTDAARMQRPVRHLGTGKTEWIGPLEQVYLEIACVEEDIRKGVTTHIEVSPANMLSLIA 672

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
           +L P  D NQSPRNMYQCQMGKQTMGTP L+W ++   K+YRLQTP +P      Y    
Sbjct: 673 SLTPFSDFNQSPRNMYQCQMGKQTMGTPGLSWTHRTDTKMYRLQTPQAPIVHNALYREFL 732

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
            D++P G N++VAVISYTGYD+EDAMILNKSS+ERGFAH  ++KS  I+L          
Sbjct: 733 FDSYPQGMNSVVAVISYTGYDLEDAMILNKSSFERGFAHASVYKSHDIDL---------- 782

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED------KLGP 829
                VD                           TK    + P  +A+        +L P
Sbjct: 783 -----VD----------------------PKDPATKSLIFKRPPREAIASSNPSALRLDP 815

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
           DGL  +G  + + D + + +     +     +   E   V+ VR+  G    G    N  
Sbjct: 816 DGLPPIGLFVQKGDAICAVYNTETGKTSLRFHDSSEPAYVDEVRILDGDPALGVQRVN-- 873

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            I +R  RNP VGDKF+SR GQKG+ SV WP  D+PFT SG+ PD + NP+ FPSRMTIG
Sbjct: 874 -IKFRYNRNPVVGDKFSSRHGQKGVLSVLWPQIDMPFTASGITPDCIINPNAFPSRMTIG 932

Query: 950 FL 951
            L
Sbjct: 933 ML 934



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 38/45 (84%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +G+NYYG+E +YSG+ G +++A I+ GVV+YQRLRHMVSDK Q +
Sbjct: 974  AGFNYYGSEPLYSGIWGDLLEADIYIGVVYYQRLRHMVSDKSQVR 1018


>gi|168042961|ref|XP_001773955.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674799|gb|EDQ61303.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1199

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 356/966 (36%), Positives = 500/966 (51%), Gaps = 115/966 (11%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE--IYGKTLKLNIVKAAISEPKVPAGPV 122
           L  L  PH  SFD+ ++ GL+ AV  + PIE +  I G +L+L + K  +S P    G  
Sbjct: 42  LYDLTKPHTESFDYFVERGLEEAVRRLQPIELKHPISGTSLRLWVEKPNVSPPMKDLGSQ 101

Query: 123 GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
            +   +  P+E R     Y G F   +   W+           G++P+M+KS  CHLR L
Sbjct: 102 ALD-QRLLPSECRLAGLTYRGIFTADICMQWNNGVVVRHNISYGKMPVMVKSSVCHLRGL 160

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
              QL+   E   E GGYFI  G+E+++RLLI  +RN+ + +KR ++KNRG  +SD GV 
Sbjct: 161 NQKQLVAAKEEATEMGGYFICNGNERIIRLLIMPKRNYVVGVKRTSYKNRGPSYSDKGVM 220

Query: 243 I-RSVKRDESATNNVLHFVTNGSARFMFSHRKS-------MCLLGMMQS----LHEEGIH 290
           I R V+ D+SA    ++++  GSA   FS R+        + L  +++S    ++E+ + 
Sbjct: 221 ISRCVRPDQSAVTMRMYYMNYGSASLGFSVRRQEFLIPVGIILKALIESNEYEIYEQLMS 280

Query: 291 TQHDSKVFFGQ------------IFKEKLQYDL--RH-------------LNEVEICDYM 323
            Q DSK   G             I +E  Q  L  RH             L    + + +
Sbjct: 281 IQSDSKAMKGALGSQFVSQRAKIILEEVRQLSLFTRHDCLQFLGGLTCYFLLVKSVGEQV 340

Query: 324 LTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL----- 378
           L + IL HLD+  DKF  L  M  KLF +V GM   D+ D++   EI+  G L       
Sbjct: 341 LNDYILVHLDNPLDKFNLLVFMLQKLFALVDGMAAPDNADALQNHEILLPGHLLTIVVKD 400

Query: 379 -----------QLLK--KEKSGTSAVLKESDI--------YAAFRASSIESAMTNFLATG 417
                      QLLK  KEK   + + +  D+        +    AS +   +   L TG
Sbjct: 401 RIQDWLLRVQGQLLKEMKEKPAENDLQQPIDVTVKHVQKVFEKVPASDVSKKVEYLLNTG 460

Query: 418 NVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWG 477
           N+ +   S L L Q  GF ++AE +N +RY+SHFR+VHRG++F  +R++  R+L  ++WG
Sbjct: 461 NLVS--QSGLDLNQVGGFTLVAEKLNFLRYLSHFRSVHRGAFFATLRTTTVRKLLPESWG 518

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQISEYI--------PSKVLAQIPSVLVSLGMLPLTPV 529
           F+CPVHTPDG+PCGLLNHLT  CQIS  +        P  +   +  V+V+LG++P+ P 
Sbjct: 519 FMCPVHTPDGSPCGLLNHLTAACQISSDLDARGNKKDPLAIRKSVTKVMVNLGLVPVLPK 578

Query: 530 IQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV-GEKIPKSLEIVYLKRPEKG 587
           + ++ P + L V+LDG ++G++      S++  LR LK+V G ++P  +EI Y+  P   
Sbjct: 579 LSNMAPPEYLTVLLDGCVIGHLATGAIPSIIEHLRRLKVVDGSEVPADMEIAYI--PCTS 636

Query: 588 MGLYPGLYLFTGPGRMLRPVMNL-AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
            G YPGLYL T P R  R V  +   G++E IG  EQV   +C    E      TH E++
Sbjct: 637 AGSYPGLYLATTPSRFTRTVKQMFGDGSLELIGPLEQVNQFLCPGGNEPIGPKPTHEEIN 696

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
            T FLS +A+L P  D NQSPRNMYQCQMGKQTMG P    + +   K+YR+QTP  P  
Sbjct: 697 ATAFLSVVASLTPWSDHNQSPRNMYQCQMGKQTMGFPAQALQCRADNKMYRIQTPQMPIA 756

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +   ++   M+ FP GTNAIVAV++YTG+DMEDAMILNKSS ERG  +G ++KS  I+L 
Sbjct: 757 QTNAWNKYHMNQFPTGTNAIVAVLAYTGFDMEDAMILNKSSVERGLHYGQVYKSETIDL- 815

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                  TE    G DG      +F       R +          D              
Sbjct: 816 -------TELRQRG-DGV---TNVFARSGAMARFKEQADKSANFIDI------------- 851

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
              DGL YVG  L E DP  S   +   +    +  G E   V+ V   +    G     
Sbjct: 852 ---DGLPYVGQTLTEGDPYCSVVNKMTGQSKISKLKGSEAAIVDYV---AAINTGSKDPL 905

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSR 945
               I  R  R P +GDKF+SR GQKG+CS  WP  D+PF+  +G+ PDI+ NPH FPSR
Sbjct: 906 QKVTIRTRHPRYPQIGDKFSSRHGQKGVCSQLWPDVDMPFSAVTGMRPDIIINPHAFPSR 965

Query: 946 MTIGFL 951
           MTIG L
Sbjct: 966 MTIGML 971



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            G+NY+GTE MYSGV G+    +I+ GVV+YQRLRHMVSDK+Q +     +P  +
Sbjct: 1026 GFNYHGTEVMYSGVLGTEFVCEIYLGVVYYQRLRHMVSDKYQVRSMGPVNPVTR 1079


>gi|328868020|gb|EGG16401.1| RNA polymerase I [Dictyostelium fasciculatum]
          Length = 1010

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 313/846 (36%), Positives = 468/846 (55%), Gaps = 103/846 (12%)

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
           M++S+ CHL  LTP +L+   E   E GGYF+V G+EKL+R+L+ N+ NHP+A++R  W 
Sbjct: 1   MVRSRLCHLEGLTPDELVSNHEEAMEMGGYFVVNGNEKLIRMLVANKGNHPVALQRKGWT 60

Query: 231 NRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS---------MCLLG-- 279
           +RG  ++  G+ IRSV  D ++  N LH++ +G   + F +++          + +LG  
Sbjct: 61  SRGPGYTKYGITIRSVLPDRTSMTNALHYLADGQVTYRFLYKRHEYFLPVAMLLRILGDT 120

Query: 280 -------------------------MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL 314
                                    M++    + ++TQ ++  + G  F+ K  +   + 
Sbjct: 121 TDKEIYQHVVQGDTENTFLTDRIELMLREQRIDHVNTQAEALDYLGSRFRHK-AFLPDNF 179

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
              +I +YM+ N IL HL ++ DKF  +  M  KL+  VQG    D+ D+    E++ GG
Sbjct: 180 TNRQIAEYMINNYILVHLPNWRDKFNLICLMVQKLYSSVQGKSDCDNIDATSFHEVLLGG 239

Query: 375 SLYLQLLKK-------------------EKSGTSAVLKESDIYAAF-RASSIESAMTNFL 414
            L+  +LK+                   EK        E+ +  +F RA +I     +FL
Sbjct: 240 HLFCSMLKERLQEYLETVRFHFLHGVEIEKKNGKNPNHEAILKKSFDRAGAIGPKFESFL 299

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
           ATGN+++  NS L + Q SGF I+AE +N +RY+SHFR++HRG++F  M++S  R+L  +
Sbjct: 300 ATGNLAS--NSGLDVQQTSGFTIIAEKLNFLRYISHFRSIHRGAFFATMKTSSIRKLMPE 357

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQISE--YIPSKVLAQ---IPSVLVSLGMLPLTPV 529
           ++GF+CPVHTPDG PCGLLNHL++NC I++      KVL     +   L+S G+  +   
Sbjct: 358 SFGFLCPVHTPDGAPCGLLNHLSSNCLITKDPLQERKVLESNLTLTKFLLSNGVTSIETT 417

Query: 530 IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGM 588
               P  +L V  +GR++G   +     LV  LR L+ VG E +P +LEI Y  +   G+
Sbjct: 418 STFRP-GSLPVTFNGRLIGMADEDTCDELVNTLRYLRSVGHENVPSTLEIAYAPKNRPGI 476

Query: 589 --GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
             G +PG+ LF+   R +RPV+N+ +G  E IG  EQ++M+I I  +E   GITTH ELS
Sbjct: 477 VGGQFPGISLFSTGARFMRPVINVKSGKQELIGPQEQLYMNIAIYPEEVKKGITTHVELS 536

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
            T  LS +ANL P  D NQSPRNMYQCQM KQTMGTP  ++ Y+   KL+++Q P  P  
Sbjct: 537 PTAMLSVVANLTPFSDYNQSPRNMYQCQMAKQTMGTPMHSYAYRADNKLFKIQNPQKPIV 596

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           R ++     ++++P G NA++AVIS TGYDMEDAMI+NKSSYERGF HG ++K++F +L+
Sbjct: 597 RTINQSKYHVNDYPHGCNAVIAVISNTGYDMEDAMIINKSSYERGFGHGSVYKTVFYDLD 656

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            G                              +LR        ++  +  D     L+  
Sbjct: 657 EG------------------------------KLRAQTGRTSVSRPDYQTD----GLDQY 682

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE-GGSVT 885
           L  DGL +VG  +   +P+Y++  E + + V      KEE  +E V++    T      T
Sbjct: 683 LDVDGLPHVGRYVTGHEPLYTFVNELDGKQVVEMIKSKEEAWIEEVKIIGNLTSMNAPRT 742

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                + YR  RNP +GDKFASR GQKG+ S  WP  ++PF++SGL PD++ NP+ FPSR
Sbjct: 743 VTKFTVKYRFDRNPVIGDKFASRHGQKGVLSQLWPEINMPFSESGLKPDVIINPNAFPSR 802

Query: 946 MTIGFL 951
           MTIG L
Sbjct: 803 MTIGML 808



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 34/46 (73%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           ++GYNYYG E MYSG  G    A IFFGV +YQRLRHMV DK+Q +
Sbjct: 847 KAGYNYYGNEPMYSGTTGEEFHADIFFGVCYYQRLRHMVKDKYQVR 892


>gi|212533185|ref|XP_002146749.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Talaromyces marneffei ATCC 18224]
 gi|210072113|gb|EEA26202.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
           [Talaromyces marneffei ATCC 18224]
          Length = 1261

 Score =  553 bits (1426), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 342/1017 (33%), Positives = 520/1017 (51%), Gaps = 168/1017 (16%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEF------------- 96
           F  PP  ++ + +   A  PHI SF+ +  E   ++ A++D+    F             
Sbjct: 23  FKNPPKDKSAYPMLQAAIRPHIDSFNALFGESKIMEEALKDMGAKTFLDGDIETPEQRKL 82

Query: 97  -EIYGK------TLKLNIVKAAISEPKVP--------AGPVGIHFNKYYPTEARQTRSVY 141
            +  G+      +L L I +  + +  +P               +   YP E R+  + Y
Sbjct: 83  RKARGQPPPQRNSLNLRITEIFLDKAVLPPTNKFVPRQASASADYRNIYPAECRERHATY 142

Query: 142 SGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYF 201
            G     + +  +        +E+G+VP+ML+S RCHL + +P +L++  E  +E GGYF
Sbjct: 143 RGRLRARLQYQVNNGEWRESVRELGQVPLMLRSNRCHLESFSPQELVDHKEESEELGGYF 202

Query: 202 IVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVT 261
           IV G+EKL+R+LI  +RN P+AI R +++ RG+ F+  GV IRS + D++   NVLH+++
Sbjct: 203 IVNGNEKLIRMLIMPKRNFPMAINRPSFQKRGVGFTTFGVQIRSARPDQTTQTNVLHYLS 262

Query: 262 NGSARFMFSHRKSMCLLGMM---------------------------------------- 281
           +G+  F FS RK   L+ +M                                        
Sbjct: 263 DGNVTFRFSWRKQEYLVPVMMILKALVETNDREIFEGIVGNASSKGSANTFVTDRVELLL 322

Query: 282 QSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY------ 335
           ++ H   I ++ D++ + G+ F+  L       +E E     L   +LPHL +       
Sbjct: 323 RTFHGYKIWSRSDARAYLGKKFRPVLFAPATWTHE-ECGTEFLRKIVLPHLGNQNVTTTQ 381

Query: 336 -WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK----------- 383
            +DKF  +  M  KL+  V G    D+ D++  QEIM GG +Y  LLK+           
Sbjct: 382 DYDKFKLILFMIRKLYSFVAGDCASDNPDAVSNQEIMLGGYVYGMLLKERLEEWLLSFGR 441

Query: 384 -------------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKN 424
                              EK   S V+K ++        ++  A+  FL+TGN+ +   
Sbjct: 442 LLRDWSYKGGNLKFTDPMFEKDFISKVIKRTN-------ENLGGALEYFLSTGNLVS--P 492

Query: 425 STLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
           + L + QASGF ++AE IN  R++SHFR VHRG++F +++++  R+L  ++WGF+CPVHT
Sbjct: 493 TGLDMQQASGFTVVAEKINFYRFISHFRMVHRGTFFAQLKTTTVRKLLPESWGFMCPVHT 552

Query: 485 PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
           PDG+PCGLLNHL   C +S       +A IP VL  LG+   T     + E ++ V L+G
Sbjct: 553 PDGSPCGLLNHLAHKCLVS--TSDLDVAHIPRVLAQLGIK--TESSAEVTE-SVCVQLNG 607

Query: 545 RIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           R++GY   + A  +   LR  K+ G   IPK LEI Y+  P    G YPG+Y+ + P RM
Sbjct: 608 RVIGYCSPKQAKMIHDTLRFWKVEGTHGIPKELEIGYI--PNMQGGQYPGIYMSSQPARM 665

Query: 604 LRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
            RPV  LA   ++++G FEQ FM+I    ++   G++TH E + T+  S +AN+ P  D 
Sbjct: 666 YRPVKYLALDKLDYVGPFEQPFMEIACLEEDIRSGLSTHIEFTPTNMFSIIANMTPFSDN 725

Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
           NQSPRNMYQCQM KQTMGTP  +  ++   K+YRLQT  +P  R   Y+   +DNFP G 
Sbjct: 726 NQSPRNMYQCQMSKQTMGTPGTSIAFRTDNKMYRLQTGQTPIVRSPLYNEYGLDNFPNGC 785

Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
           NAIVA++SY+ YDM+DAMI+NKSS+ERGF HG ++K+ F         Y  +   S  + 
Sbjct: 786 NAIVAILSYSAYDMDDAMIINKSSHERGFGHGTVYKTKF---------YNLDDKDSRRNK 836

Query: 784 SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD 843
           S  +    FG      ++     +W+T                L  DGL + G K+ E  
Sbjct: 837 SKREISKLFGFAPGAEIKA----EWRTT---------------LDEDGLPHPGVKVKEGS 877

Query: 844 PMYSYWK----ESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
            + +++        + YV         +Y   EE  ++ VR+     E G+       + 
Sbjct: 878 YVAAWYNVRYDAGSDSYVNVDGQTHFLKYKDAEEGYIDTVRLVG--NENGNEPLQAISVK 935

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           YR+ R P +GDKF+SR GQKG+CS  WPA D+PF++SG++PD++ NPH FPSRMTI 
Sbjct: 936 YRVPRKPIIGDKFSSRHGQKGVCSQLWPAIDMPFSESGIMPDLIINPHAFPSRMTIA 992



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 35/190 (18%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
            ++GYNY+G E MYSG+ G    A I+ GVVHYQRLRHMV+DK+Q +      P N     
Sbjct: 1033 KAGYNYHGNEPMYSGITGKEFAADIYLGVVHYQRLRHMVNDKFQVRT---TGPVNSVTGQ 1089

Query: 826  KL---GPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEV-------VR 873
             +      G + VG    ERD + ++      ++R + C  S +  +C +        V 
Sbjct: 1090 PVKGRSKGGGIRVGEM--ERDSLLAHGCAFLLQDRLMNCSDSTRAWICRDCGSFLSTQVA 1147

Query: 874  MSSGFTEGG--------------SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
            +SS    GG                TPN   I   + R  +V     +  G  GI   + 
Sbjct: 1148 VSSNGPSGGLADAASKAALAAAAKATPNNQVITSNLSRISSVN----ALGGTNGIVRCRR 1203

Query: 920  PAEDLPFTDS 929
             A +  F DS
Sbjct: 1204 CAREAVFDDS 1213


>gi|240278168|gb|EER41675.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
          Length = 1242

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 340/1015 (33%), Positives = 526/1015 (51%), Gaps = 160/1015 (15%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     +  L     PHI SF+ + D    L+ A++DI  + F          
Sbjct: 19  ERLFRHPPKDHTAYPSLAASIRPHIDSFNALFDNNKILEAALKDIGTMSFLDGDAETQEQ 78

Query: 97  ----------EIYGKTLKLNIVKAAISEPKVPAG-PVGIHFNKYYPTEARQTRSVYSGPF 145
                           L + I +  + +  +PA         + YP+E R+  + Y G  
Sbjct: 79  KRVRLDDGRRSPRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML+S RCHL   +P QL++R E  +E GGYFIV G
Sbjct: 139 RARLEYRVNNGEWKESVRELGQVPIMLRSNRCHLEKCSPEQLVQRKEESEELGGYFIVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI  RRN P+AI R+++  RG  ++  G+ IRSV+ D+++  NVLH++++G+ 
Sbjct: 199 NEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRTDQTSQTNVLHYLSDGNV 258

Query: 266 RFMFSHRKSMCLLGMMQSLH-------------------EEGI----------------- 289
            F FS RK+  L+ ++  L                     EGI                 
Sbjct: 259 TFRFSWRKNEYLVPVVMILKALVETNDREIFERLVGREGSEGIKNSFVTDRVELLLRTYK 318

Query: 290 ----HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
               + + D++ + G+ F+  L       +++   ++ L   +LPHL +         DK
Sbjct: 319 GYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEF-LRKVVLPHLGNQNVTESQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--------------- 383
           F  +  M  KL+ +V G    D+ D++  QE++ GGSLY  LLK+               
Sbjct: 378 FNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLYGMLLKERLEEWLRAFGPIARD 437

Query: 384 ---------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQ 428
                          EK   S ++  ++        +I  A+  FL+TGN+ +   + L 
Sbjct: 438 WSFRNQNARFSDPRFEKEFLSRIVSRTN-------ENIGGALEYFLSTGNLVS--PTGLD 488

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ ++AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 489 LQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 548

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNHL   C+I+    +  ++ +P V+  LG+   + V     +++++V LDGRI+G
Sbjct: 549 PCGLLNHLAHECKIA--TSNLDVSGVPQVISDLGVTYESSVSL---DESVVVQLDGRILG 603

Query: 549 YILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           Y   + A  +   LR  K+ G K +P  LEI Y+  P    G YPG+Y+F+   RM+RPV
Sbjct: 604 YCSPKQARMISDTLRYWKVAGNKSLPVELEIGYI--PNSNRGQYPGIYIFSQCARMMRPV 661

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L    ++++G FEQ FM+I     +   GI+TH E   T  LS +AN+ P  D NQSP
Sbjct: 662 KYLPLDKLDYVGPFEQPFMEIACVPSDIMSGISTHVEFDPTHILSIVANMTPFSDFNQSP 721

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQM KQ MGTP  +  Y+   KLYRLQT  +P  R   Y++  +DNFP G NA+V
Sbjct: 722 RNMYQCQMSKQAMGTPGASIEYRTDNKLYRLQTGQTPVVRTPLYNSYGLDNFPNGMNAVV 781

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           AV+SYTGYDM+DAMI+NKS+++RGF  G I+K+    L+        +    G   +  +
Sbjct: 782 AVLSYTGYDMDDAMIINKSAHDRGFGWGTIYKTKIYSLD--------DKESRGRGKARRE 833

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER----- 842
               FG         ++  +W+            AL++    DGL ++GA++ E      
Sbjct: 834 VSKLFGFAPGS----LIKGEWR-----------HALDE----DGLPHIGARVTEGSIVAA 874

Query: 843 ------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
                 DP+ + +   + +    +Y   EE  ++ VR+    +E G        + +R+ 
Sbjct: 875 WHTVRFDPVSNSYTNIDGQTHLLKYKDTEEGYIDNVRIFG--SETGGDPCQAISVKFRVP 932

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R P +GDKF+SR GQKG+CS  WPA D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 933 RKPVIGDKFSSRHGQKGVCSQLWPAIDMPFSETGIQPDIIINPHAFPSRMTIGMF 987



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVR 1071


>gi|402086731|gb|EJT81629.1| DNA-directed RNA polymerase I subunit RPA2 [Gaeumannomyces graminis
           var. tritici R3-111a-1]
          Length = 1240

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/996 (34%), Positives = 516/996 (51%), Gaps = 141/996 (14%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFML-DEG----LDLAVEDIAP-IEFEIYGKT--- 102
           F  PP     +     A  PHI SF+ +  D+G    +D A+ DI   + F+   K    
Sbjct: 23  FRNPPKDHTAYPALQNAVNPHIESFNALFRDDGRPGLIDHAIADIGTRLYFDGDAKIPLS 82

Query: 103 ----LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               L +      + +  VP         + +P E R+  + Y G  + T  +  + +  
Sbjct: 83  QRNRLTVRYKSVNLQKSYVPVTNKLAKTREIFPAECRERHATYRGKLSATFEFQINDEEP 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             F +E+G++PIM+KS RCHL   +PAQL+ER E  +E GGYFIV G+EK++RLL+ NRR
Sbjct: 143 QEFVREIGQMPIMVKSNRCHLEENSPAQLVERKEESEELGGYFIVNGNEKIIRLLLLNRR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS---- 274
           N P+AI R +++NRG  ++  G+ +R V+ DE++  NVLH++ +G+  F FS RK+    
Sbjct: 203 NFPLAINRPSFQNRGPSYTPYGIIMRCVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLV 262

Query: 275 ---MCLLGMMQSLHEE---------------------------------GIHTQHDSKVF 298
              M L  ++++   E                                 G++++  ++ +
Sbjct: 263 PVMMILKALVETNDREIFEGLCGPPGSKGVENSFLTDRVELLLRTYKAYGLYSKSKTRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DKFLCLSHMTCKLFH 351
            G+ F+  L      ++  E+    L   +L H+           DKF  L  M  KL+ 
Sbjct: 323 LGEKFRVVLGVP-ETMSHYEVGTEFLRKIVLVHIGSVAVTEQQDSDKFRMLLVMMRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------------KSGTS 389
           +V G   +D+ D+I  QEI+ GG LY  +L++                        + TS
Sbjct: 382 LVAGECAVDNPDAIQNQEILLGGFLYGMILRERLEELLNTHLRLVLRDFHRRSPANTFTS 441

Query: 390 AVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
           A   +      FR ++  I +++  FL+TGN+ +   S L L Q SGFV++AE +N +R+
Sbjct: 442 AAFAKEFPANIFRRTNENIGNSLEYFLSTGNLLS--PSGLDLQQTSGFVVVAEKLNFLRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I     
Sbjct: 500 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHTCKI--MTD 557

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
           S  ++ IP +   LG++  +    +  E++++VMLDG+I+G+     +  +   LR  K+
Sbjct: 558 SVDVSAIPRLAAELGVVNTS---SAATEESVVVMLDGKILGWCSPGQSRRIADTLRYWKV 614

Query: 568 -VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
                +P  LEI  +  P    G YPG+Y+ +   RM+RPV  L     +++GT EQ +M
Sbjct: 615 EKSHGVPVELEIGLV--PPSNGGTYPGIYMASQASRMVRPVKYLPLEKEDFVGTQEQPYM 672

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
            I  T  E   G +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP   
Sbjct: 673 SIACTEPEIVSGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAA 732

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
            R++   K+YRLQT  +P  R   ++    DNFP GTNA+VAVISYTGYDM+DAMI+NKS
Sbjct: 733 LRHRTDNKMYRLQTGQTPIVRAPLHNEYGFDNFPNGTNAVVAVISYTGYDMDDAMIINKS 792

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           ++ERGF HG I+K+  I L+        + +              FG      ++     
Sbjct: 793 AHERGFGHGTIYKTKKITLKDDSRTRSAKNVTK-----------LFGFAPSGAVK----- 836

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC------- 859
            WQ               + L  DGL ++G ++ E D + + W      Y          
Sbjct: 837 GWQ--------------REMLDEDGLPWIGREVKEGD-VIAAWHTVSADYSDQLMNRDGI 881

Query: 860 ----RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGIC 915
               +Y   E   +E VR+     E G        I +RI R+P +GDKF+SR GQKG+ 
Sbjct: 882 THFEKYKDSETAYIEEVRLIG--NENGVEPLQTVSIKFRIPRSPIIGDKFSSRHGQKGVA 939

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           S KWP  D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 940 SQKWPMIDMPFSESGMQPDVIINPHAFPSRMTIGMF 975



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYN++G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGYNFHGNEPMYSGITGQELAADIYIGVVYYQRLRHMVNDKFQVR 1059


>gi|429859867|gb|ELA34625.1| DNA-directed RNA polymerase i subunit beta [Colletotrichum
           gloeosporioides Nara gc5]
          Length = 1225

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/1003 (34%), Positives = 533/1003 (53%), Gaps = 156/1003 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLD-EGLDLAVEDIAPIEFEIY----------G 100
           F  PP     +  L    +PHI SF+ +   +G  L    +  I  + Y          G
Sbjct: 23  FRNPPKDHTAYPALQEAVSPHIDSFNALFRADGKGLLARGLEDIGVKSYLDGDDRTGPEG 82

Query: 101 KT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           K  L +     ++ + ++P         +  P+E R+    Y G  + T  +  +     
Sbjct: 83  KNRLTIKYKGVSLQKSQLPPSNKFARNREILPSECRERHCTYRGRLSATFEYRINDGDPK 142

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
            F +E+G+VPIM+KS RCHL   +PAQL+++ E  +E GGYFIV G+EK++R+L  NRRN
Sbjct: 143 EFVRELGQVPIMVKSNRCHLEGNSPAQLVQKKEESEELGGYFIVNGNEKIIRMLQVNRRN 202

Query: 220 HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG 279
            P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++++G+  F FS +K+  L+ 
Sbjct: 203 FPMAINRPSFQNRGQGYTPYGIILRSVRPDETSQTNVLHYLSDGNMTFRFSWKKNEYLIP 262

Query: 280 MMQSL-------------------HEE---------------------GIHTQHDSKVFF 299
           +M  L                   H +                     G++++ +++ + 
Sbjct: 263 VMMILKALVETNDREIFEGLIGLSHSKSAKNTFLTDRVELLLRTYKSYGLYSKTETRAYL 322

Query: 300 GQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DKFLCLSHMTCKLFHV 352
           G+ F+  +      ++  ++    L   +L HL +         DKF  L  M  KL+ +
Sbjct: 323 GEKFRVVMGVP-DTMSNYDVGTEFLRKIVLVHLGNVNVTEKEDNDKFRTLLFMIRKLYAL 381

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--EKSGTSAV---LKE-----------SD 396
           V G   +D+ D++  QE++ GG LY  ++K+  E+  T+AV   L+E           S 
Sbjct: 382 VAGDCAVDNPDALQNQEVLLGGFLYGMIIKERLEEFLTTAVRLSLREWCRKHPATPFTSQ 441

Query: 397 IYAA------FRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
            +A       FR ++  + + +  FL+TGN+++   S L L Q +GF ++AE +N +R++
Sbjct: 442 EFAKEFPGNIFRHANENVGNGLEYFLSTGNLTS--PSGLDLQQTAGFTVVAEKLNFLRFI 499

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
           SHFR +HRG++F E++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I     S
Sbjct: 500 SHFRMIHRGAFFAELKTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHLAHKCKI--MTES 557

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
              ++IP+++  LG +  +    +  ++++++MLDGRI+G+   + +  +   LR  K+ 
Sbjct: 558 VDASKIPALVTELGAVQTS---SAATDESVVIMLDGRIIGFCTPRESLRIADTLRHWKVE 614

Query: 569 G-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMD 627
           G   +P  LEI Y+  P    G YPG+YL + P RM+RPV  L     +++G  EQ +M 
Sbjct: 615 GTHGVPLQLEIGYV--PPSHGGSYPGVYLASAPARMVRPVKYLPLDKEDFVGPHEQPYMS 672

Query: 628 ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           I +   E   G TTH E S T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP    
Sbjct: 673 IAVVENEIVSGETTHVEFSPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAL 732

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
           R++   K+YRLQ+  +P  R   ++    DNFP GTNA+VAVISYTGYDM+DAMILNKS+
Sbjct: 733 RHRTDNKMYRLQSGQTPVVRSPLHNAYGFDNFPNGTNAVVAVISYTGYDMDDAMILNKSA 792

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTET---MYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           +ERGF HG I+K+  + L+        +    ++    G  ++        HY+      
Sbjct: 793 HERGFGHGTIYKTKKVSLKDESRTRSVKNITKLFGFAPGGFVKG-------HYR------ 839

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK 864
                            AL++    DGL +VG  + E D + ++        V+  YSGK
Sbjct: 840 ----------------AALDE----DGLPFVGRMVQEGDVLCAW------HTVSADYSGK 873

Query: 865 ----------------EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASR 908
                           E   +E VR+    +E G+       I  RI R+P +GDKF+SR
Sbjct: 874 LINLDGQTHYEKYKESETAFIEEVRVIG--SETGNEPAQTVSIKLRIPRSPVIGDKFSSR 931

Query: 909 AGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            GQKG+ S KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 932 HGQKGVASQKWPAIDMPFSESGMQPDVIINPHAFPSRMTIGMF 974



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1012 MKAGYNYHGNEPMYSGITGEELAADIYVGVVYYQRLRHMVNDKYQVR 1058


>gi|71005228|ref|XP_757280.1| hypothetical protein UM01133.1 [Ustilago maydis 521]
 gi|46096459|gb|EAK81692.1| hypothetical protein UM01133.1 [Ustilago maydis 521]
          Length = 1289

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 332/924 (35%), Positives = 488/924 (52%), Gaps = 111/924 (12%)

Query: 100  GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
            G  + L +    +S+P +     G+   + +PTEAR+    Y+G     + WS +G    
Sbjct: 142  GNRITLRMDSVNLSKPLINERAKGVRERRVFPTEARERLFTYTGKLTARLCWSVNGDPEQ 201

Query: 160  TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
            +    +G  P++++S RC+LR ++  +L+   E  +E+GGYF+V G+E+L+R LI  + N
Sbjct: 202  SDIVTLGNCPVLVRSNRCNLRGMSSRELVAHHEEANEFGGYFLVNGNERLIRYLIVAKAN 261

Query: 220  HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE-SATNNVLHFVTNGSARFMFSHRKS---- 274
             P AI+R +++ RG  +S+  + IR + +D+  +  N +H++ NG     FS RK     
Sbjct: 262  SPQAIERPSFEKRGPSYSNKAIVIRCLHKDDLISVTNAVHYLHNGGLTMRFSWRKQEYMV 321

Query: 275  ---MCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEI------------ 319
               M L  ++ +  +E I        F      ++++  LR+  +  +            
Sbjct: 322  PVVMVLKALVDATDKE-IFASIVQGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGS 380

Query: 320  -------C--DY--------MLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
                   C  DY        +++  +L HLD   DK+  L  M  KL+ +V G    D+ 
Sbjct: 381  KFRVVLGCPEDYTDAQVGTELISRILLVHLDSPRDKYKMLIFMIQKLYSLVAGESCADNA 440

Query: 363  DSIMLQEIMTGGSLYLQLLKK---EKSGTSAVLKESDIYAAFRA---------------- 403
            DS    EI+  G L  Q++K+   E  G        D+    +                 
Sbjct: 441  DSPQHHEILMPGFLVGQIIKERIDEAVGNIRAQIARDVRMKVKGLDFFDSKYIKKTVSKV 500

Query: 404  -SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
               I   + +FLATGN+S+   S L L Q SGF IMAE +N  RY++HFR+VHRG++F E
Sbjct: 501  NIDIGVKIASFLATGNLSS--PSGLDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAE 558

Query: 463  MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
            ++++  R+L  +AWGF+CPVHTPDG+PCGLLNH +  C+++   P   ++ I ++L  LG
Sbjct: 559  LKTTSVRKLLPEAWGFLCPVHTPDGSPCGLLNHFSHTCRMTTRQPD--VSHIHALLSGLG 616

Query: 523  MLPLTPVIQSIP----------EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EK 571
            M      I ++           +  ++V LDG I+GY    +A  +   LR+ K  G   
Sbjct: 617  MTEAAFAIGAVGAASQRDTDARDNMVVVQLDGAILGYTTPALAKHMATALRIWKTEGLHH 676

Query: 572  IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
            +P  LEI ++  P    G YPGLYLF+   RM+RPV  L    I+ +G FEQV++DI   
Sbjct: 677  VPLDLEIGFV--PTSRAGQYPGLYLFSNRARMMRPVRLLHNNKIDMVGPFEQVYLDIACD 734

Query: 632  MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
             +E  PG++TH EL+ T  LS LANL P  D NQSPRN YQ QM KQTMGT       + 
Sbjct: 735  PQEVVPGVSTHVELAPTSILSVLANLTPFSDYNQSPRNCYQAQMMKQTMGTASTAVSRRT 794

Query: 692  VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
              KLYR+QTP +P  RP  Y+    D++P GTNAIVAVISYTGYDMEDAMILNKS++ERG
Sbjct: 795  DNKLYRIQTPQTPVVRPELYNKYGFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAHERG 854

Query: 752  FAHGCIFKSMFIELES--GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
            F +G ++KS  I+L    G +     T++             FG     R          
Sbjct: 855  FGYGTVYKSETIDLRDLKGKSSSSVPTLH-------------FGFAPNSRPTE------- 894

Query: 810  TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
                     A +A+ D+   DGL Y+G K+   +P+ +YW E   + +  ++ G E   V
Sbjct: 895  ---------AQRAILDQ---DGLPYIGQKVMAGEPICAYWDEVSGKTMFKKFKGDEYAYV 942

Query: 870  EVVRMSSGFTEGGSVTPNC--AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
            + VR+       G     C    I  RI R+P +GDKF+SR GQKG+CS KWPA D+PF+
Sbjct: 943  DTVRLLGSDAGSGGGDSECQKVQIMLRITRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFS 1002

Query: 928  DSGLVPDIVFNPHGFPSRMTIGFL 951
            +SG+ PD++ NPH FPSRMTIG L
Sbjct: 1003 ESGMQPDVIINPHAFPSRMTIGML 1026



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYN+ G E MYSG+ G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1066 AGYNHVGNEPMYSGITGQELRADIYLGVVYYQRLRHMVNDKFQVR 1110


>gi|389633795|ref|XP_003714550.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae
           70-15]
 gi|351646883|gb|EHA54743.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae
           70-15]
          Length = 1240

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 343/999 (34%), Positives = 523/999 (52%), Gaps = 147/999 (14%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFML-DEG----LDLAVEDIAPIEF--------EI 98
           F  PP   + +  L T   PHI SF+ +  D+G    +D A+ DI    F          
Sbjct: 23  FRNPPTDHSAYPALQTAVNPHIESFNALFRDDGKPGLIDHAIRDIGTKYFLDGDASMPSS 82

Query: 99  YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               L + I + ++ +  VP         + +P+E R+    Y G  + T  +  +    
Sbjct: 83  ERNRLSVRIKEVSLQKSWVPTTNKFAKTREIFPSECRERHVSYRGKLSATFEYQINNGEL 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
               +++G++PIM+KS RCHL   +PA L++R E  +E GGYFIV G+EK++RLL+ NRR
Sbjct: 143 KECVRDIGQMPIMVKSNRCHLEGNSPALLVQRKEESEELGGYFIVNGNEKIIRLLLLNRR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS---- 274
           N P+AI R +++NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+    
Sbjct: 203 NFPLAINRPSFQNRGPAYTPYGIILRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLV 262

Query: 275 ---MCLLGMMQSLHEE---------------------------------GIHTQHDSKVF 298
              M L  ++++   E                                 G++++  ++ +
Sbjct: 263 PVMMILKALVETNDSEIFEGLCGPPGSKGVGNSFLTDRVELLLRTYKSYGLYSKTKTRAY 322

Query: 299 FGQIFKEKL--QYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKL 349
            G+ F+  L  Q  + H    ++    L   +L HL  +        DKF  +  M  KL
Sbjct: 323 LGEKFRVVLGVQDSMSHY---DVGTEFLKKIVLVHLGSHDVTEQEDADKFRMILVMMRKL 379

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------------KSG 387
           + +V G   +D+ D++  QEI+ GG LY  +LK+                        + 
Sbjct: 380 YALVAGECAVDNPDAVQNQEILLGGYLYGMILKERLEEFVAVSLRAALRDYLRRSPANTF 439

Query: 388 TSAVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
           TSA  ++      FR ++  + +++  FL+TGN+ +   S L L Q SGFV++AE +N +
Sbjct: 440 TSAAFEKDFPANIFRRTNENLGNSLEYFLSTGNLQS--PSGLDLQQTSGFVVVAEKLNFL 497

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
           R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I   
Sbjct: 498 RFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKI--M 555

Query: 506 IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
             +  ++ IP +   LG++  +    +  E+++ VMLDG+I+G+   + + ++   LR  
Sbjct: 556 TDAVDVSAIPRLATELGVVDTS---SADTEESVPVMLDGKILGWCSPKQSRTIADTLRYW 612

Query: 566 KIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV 624
           K+ G   +P  +EI  +  P    G YPG+Y+ + P RM+RPV  L     +++GT EQ 
Sbjct: 613 KVEGSHGVPVHMEIGLV--PPSNGGSYPGIYMASQPSRMVRPVKYLPLEKEDYVGTHEQP 670

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
           +M I  T  E   G +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP 
Sbjct: 671 YMSIACTEPEIVSGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPG 730

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
                +   K+YR+QT  +P  R   ++    DNFP G NA+VAVISYTGYDM+DAMI+N
Sbjct: 731 AAISRRTDNKMYRIQTGQTPIVRAPLHNEYGFDNFPNGMNAVVAVISYTGYDMDDAMIIN 790

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           KS++ERGF HG I+K+  I L+       T+ +              FG           
Sbjct: 791 KSAHERGFGHGTIYKTKKITLKDDSRTRSTKHITK-----------MFG----------- 828

Query: 805 SDKWQTKDYFGRDPANKALE-DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC---- 859
                    F  +   KA + +KL  DGL  +G+K+ + D + + W      Y       
Sbjct: 829 ---------FAPNTTVKARDLEKLDLDGLPRIGSKVEQGD-IIAAWHTVSADYSDQLVNR 878

Query: 860 -------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
                  +Y   E   VE +R+     E G+       I +RI R+P +GDKF+SR GQK
Sbjct: 879 DGLTHYEKYKDSETAFVEEIRLVG--NENGTEPLQTVSIKFRIPRSPVIGDKFSSRHGQK 936

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G+ S KWP  D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 937 GVASQKWPMIDMPFSESGMQPDVIINPHAFPSRMTIGMF 975



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGYNYHGNEPMYSGITGQELAADIYIGVVYYQRLRHMVNDKFQVR 1059


>gi|325096233|gb|EGC49543.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H88]
          Length = 1242

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 341/1015 (33%), Positives = 525/1015 (51%), Gaps = 160/1015 (15%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     +  L     PHI SF+ + D    L+ A++DI    F          
Sbjct: 19  ERLFRHPPKDHTAYPSLAASIRPHIDSFNALFDNNKILEAALKDIGTKSFLDGDAETQEQ 78

Query: 97  ----------EIYGKTLKLNIVKAAISEPKVPAG-PVGIHFNKYYPTEARQTRSVYSGPF 145
                           L + I +  + +  +PA         + YP+E R+  + Y G  
Sbjct: 79  KRVRLDDGRRSPRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML+S RCHL   +P QL++R E  +E GGYFIV G
Sbjct: 139 RARLEYRVNNGEWKESVRELGQVPIMLRSNRCHLEKCSPEQLVQRKEESEELGGYFIVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI  RRN P+AI R+++  RG  ++  G+ IRSV+ D+++  NVLH++++G+ 
Sbjct: 199 NEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRTDQTSQTNVLHYLSDGNV 258

Query: 266 RFMFSHRKSMCLLGMMQSLH-------------------EEGI----------------- 289
            F FS RK+  L+ ++  L                     EGI                 
Sbjct: 259 TFRFSWRKNEYLVPVVMILKALVETNDREIFERLVGREGSEGIKNSFVTDRVELLLRTYK 318

Query: 290 ----HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
               + + D++ + G+ F+  L       +++   ++ L   +LPHL +         DK
Sbjct: 319 GYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEF-LRKVVLPHLGNQNVTESQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--------------- 383
           F  +  M  KL+ +V G    D+ D++  QE++ GGSLY  LLK+               
Sbjct: 378 FNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLYGMLLKERLEEWLRAFGPIARD 437

Query: 384 ---------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQ 428
                          EK   S ++  ++        +I  A+  FL+TGN+ +   + L 
Sbjct: 438 WSFRNQNARFSDPRFEKEFLSRIVSRTN-------ENIGGALEYFLSTGNLVS--PTGLD 488

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ I+AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 489 LQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 548

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNHL   C+I+    +  ++ +P V+  LG+   + V     +++++V LDGRI+G
Sbjct: 549 PCGLLNHLAHECKIA--TSNLDVSGVPQVISDLGVTYESSVSL---DESVVVQLDGRILG 603

Query: 549 YILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           Y   + A  +   LR  K+ G K +P  LEI Y+  P    G YPG+Y+F+   RM+RPV
Sbjct: 604 YCSPKQARMISDTLRYWKVAGNKSLPVELEIGYI--PNSNRGQYPGIYIFSQCARMMRPV 661

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L    ++++G FEQ FM+I     +   GI+TH E   T  LS +AN+ P  D NQSP
Sbjct: 662 KYLPLDKLDYVGPFEQPFMEIACVPSDIMSGISTHVEFDPTHILSIVANMTPFSDFNQSP 721

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQM KQ MGTP  +  Y+   KLYRLQT  +P  R   Y++  +DNFP G NA+V
Sbjct: 722 RNMYQCQMSKQAMGTPGASIEYRTDNKLYRLQTGQTPVVRTPLYNSYGLDNFPNGMNAVV 781

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           AV+SYTGYDM+DAMI+NKS+++RGF  G I+K+    L+        +    G   +  +
Sbjct: 782 AVLSYTGYDMDDAMIINKSAHDRGFGWGTIYKTKIYSLD--------DKESRGRGKARRE 833

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER----- 842
               FG         ++  +W+            AL++    DGL ++GA++ E      
Sbjct: 834 VSKLFGFAPGS----LIKGEWR-----------HALDE----DGLPHIGARVTEGSIVAA 874

Query: 843 ------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
                 DP+ + +   + +    +Y   EE  ++ VR+    +E G        + +R+ 
Sbjct: 875 WHTVRFDPVSNSYTNIDGQTHLLKYKDTEEGYIDNVRIFG--SETGGDPCQAISVKFRVP 932

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R P +GDKF+SR GQKG+CS  WPA D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 933 RKPVIGDKFSSRHGQKGVCSQLWPAIDMPFSETGIQPDIIINPHAFPSRMTIGMF 987



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVR 1071


>gi|346978143|gb|EGY21595.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium dahliae
           VdLs.17]
          Length = 1231

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 348/1005 (34%), Positives = 518/1005 (51%), Gaps = 159/1005 (15%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFML-DEG----LDLAVEDIAPIEF------EIYG 100
           F  PP     +  L    +PHI SF+ +  ++G    LD  + DI    F         G
Sbjct: 23  FKNPPKDHTAYPALQAAVSPHIESFNALFRNDGKPSLLDHGLADIGTKTFLDGDDRTPQG 82

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKY------YPTEARQTRSVYSGPFNVTVAWSWD 154
           +  KL I    ++  K    P     NKY      +P E R+    Y G  + T  +  +
Sbjct: 83  QRNKLTIRYKGVTLQKSQLPPS----NKYAKTREIFPAECRERHVTYRGKLSATFEFRIN 138

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                 FT+++G++PIM+KS RCHL   +P  L++R E  +E GGYFIV G EK++RLL 
Sbjct: 139 DGDAKEFTRDLGQMPIMVKSNRCHLEGNSPDLLVKRKEESEELGGYFIVNGIEKIIRLLQ 198

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS 274
            NRRN P+AI R ++ NRG  +S  G+ +RSV+ DE++  NVLH++T+G+  F FS RK+
Sbjct: 199 VNRRNFPMAIYRPSFANRGAGYSPHGIILRSVRPDETSQTNVLHYLTDGNMTFRFSWRKN 258

Query: 275 -------MCLLGMMQSLHEE---------------------------------GIHTQHD 294
                  M L  ++++   E                                 G++T+ +
Sbjct: 259 EYLVPVMMILKALVETNDREIFEGLIGSKGSKSAQNTFLTDRVELLLRTYTSYGLYTKTE 318

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTC 347
           ++ + G+ F+  L      ++  ++    L   +L HL +         DKF  L  M  
Sbjct: 319 TRAYLGEKFRVVLGVP-DTMSHYDVGTEFLKRIVLVHLGNVDVTEQQDSDKFKMLLFMIR 377

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KSGTSAVLKE-------- 394
           KL+ +V G   +D+ D+I  QE++ GG LY  +LK+       +   A L++        
Sbjct: 378 KLYALVAGECSVDNPDAIQNQEVLLGGFLYGMILKERLDEFLSTAVRASLRDYHRKFPAK 437

Query: 395 ----SDIYAAFRAS-------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
                D    F A+       S+ S +  F++TGN+++   S L L Q +G+ ++AE +N
Sbjct: 438 TFTSQDFQKDFPATIFRLANESLGSGLEYFMSTGNLTS--PSGLDLQQTAGYTVVAEKLN 495

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
            +R++SHFR +HRG++F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I 
Sbjct: 496 FLRFISHFRMIHRGAFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCRIM 555

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           ++ + +  L   P+++  +G +  +    +  +++++VMLDGR++G+   Q +  +   L
Sbjct: 556 TDPVDTSTL---PALVAEMGAVSTS---SAATDESVVVMLDGRVLGFSTPQESIRIADTL 609

Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
           R  K+ G   +P  LEI Y+  P    G YPGLY+ +   RM+RPV  L     +++G  
Sbjct: 610 RYWKVEGTHGVPLELEIGYV--PPSNGGSYPGLYIASKAARMVRPVKYLPLQKQDYVGPH 667

Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
           EQ +M I +   E   G +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMG
Sbjct: 668 EQPYMSIAVVENEIISGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMG 727

Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
           TP     ++   KLYR+QT  +P  R   ++    DNFP G N++VAVISYTGYDM+DAM
Sbjct: 728 TPATALAHRTDNKLYRIQTGQTPVVRSPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAM 787

Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           ILNKSS+ERGF HG I+K   + L+               D     A+            
Sbjct: 788 ILNKSSHERGFGHGTIYKVKKVSLKD--------------DSRSRTAK------------ 821

Query: 802 HMVSDKWQTKDYFGRDP---ANKALEDKLGPDGLVYVGAKLNERDPMYSYWK-------- 850
                  Q    FG  P           L  DGL YVG  + E D + +Y          
Sbjct: 822 -------QVTKLFGFAPNSFVKGEYRSMLDEDGLPYVGRMVQEGDILCAYHTVTADFNGN 874

Query: 851 ----ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFA 906
               + + +Y   +Y   E+  +E VR+    +E G+       I  R+ R P +GDKF+
Sbjct: 875 LTNLDGQTQYE--KYKESEQAFIEEVRIIG--SENGNEPAQTVSIKLRVPRAPVIGDKFS 930

Query: 907 SRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           SR GQKG+ S KWPA D+PFT+SG+ PD + NPH FPSRMTIG  
Sbjct: 931 SRHGQKGVASQKWPATDMPFTESGMQPDTIINPHAFPSRMTIGMF 975



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1013 MKAGYNYHGNEPMYSGITGEELSADIYIGVVYYQRLRHMVNDKYQVR 1059


>gi|225557526|gb|EEH05812.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus G186AR]
          Length = 1242

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 340/1015 (33%), Positives = 524/1015 (51%), Gaps = 160/1015 (15%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     +  L     PHI SF+ + D    L+ A++DI    F          
Sbjct: 19  ERLFRHPPKDHTAYPSLAASIRPHIDSFNALFDNNKILEAALKDIGTKSFLDGDAETQEQ 78

Query: 97  ----------EIYGKTLKLNIVKAAISEPKVPAG-PVGIHFNKYYPTEARQTRSVYSGPF 145
                           L + I +  + +  +PA         + YP+E R+  + Y G  
Sbjct: 79  KRVRLDDGRRSPRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML+S RCHL   +P QL++R E  +E GGYFIV G
Sbjct: 139 RARLEYRVNNGEWKESVRELGQVPIMLRSNRCHLEKCSPEQLVQRKEESEELGGYFIVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI  RRN P+AI R+++  RG  ++  G+ IRSV+ D+++  NVLH++++G+ 
Sbjct: 199 NEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRIDQTSQTNVLHYLSDGNV 258

Query: 266 RFMFSHRKSMCLLGMMQSLH-------------------EEGI----------------- 289
            F FS RK+  L+ ++  L                     EGI                 
Sbjct: 259 TFRFSWRKNEYLVPVVMILKALVETNDREIFERLVGREGSEGIKNSFVTDRVELLLRTYK 318

Query: 290 ----HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
               + + D++ + G+ F+  L       +++   ++ L   +LPHL +         DK
Sbjct: 319 GYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEF-LRKVVLPHLGNQNVTESQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--------------- 383
           F  +  M  KL+ +V G    D+ D++  QE++ GGSLY  LLK+               
Sbjct: 378 FNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLYGMLLKERLEEWLRAFGPIARD 437

Query: 384 ---------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQ 428
                          EK   S ++  ++        +I  A+  FL+TGN+ +   + L 
Sbjct: 438 WSFRNQNARFSDPRFEKEFLSRIVSRTN-------ENIGGALEYFLSTGNLVS--PTGLD 488

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ ++AE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+
Sbjct: 489 LQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGS 548

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           PCGLLNHL   C+I+    +  ++ +P V+  LG+   + V     ++++ V LDGRI+G
Sbjct: 549 PCGLLNHLAHKCEIA--TSNLDVSGVPQVISDLGVTYESSVSL---DESVAVQLDGRILG 603

Query: 549 YILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           Y   + A  +   LR  K+ G K +P  LEI Y+  P    G YPG+Y+F+   RM+RPV
Sbjct: 604 YCSPKQARMISDTLRYWKVAGNKSLPVELEIGYI--PNSNRGQYPGIYIFSQCARMMRPV 661

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L    ++++G FEQ FM+I     +   GI+TH E   T  LS +AN+ P  D NQSP
Sbjct: 662 KYLPLDKLDYVGPFEQPFMEIACVPSDIMSGISTHVEFDPTHILSIVANMTPFSDFNQSP 721

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQM KQ MGTP  +  Y+   KLYRLQT  +P  R   Y++  +DNFP G NA+V
Sbjct: 722 RNMYQCQMSKQAMGTPGASIEYRTDNKLYRLQTGQTPVVRTPLYNSYGLDNFPNGMNAVV 781

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           AV+SYTGYDM+DAMI+NKS+++RGF  G I+K+    L+        +    G   +  +
Sbjct: 782 AVLSYTGYDMDDAMIINKSAHDRGFGWGTIYKTKIYSLD--------DKESRGRGKARRE 833

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER----- 842
               FG         ++  +W+            AL++    DGL ++GA++ E      
Sbjct: 834 VSKLFGFAPGS----LIKGEWR-----------HALDE----DGLPHIGARVTEGSIVAA 874

Query: 843 ------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
                 DP+ + +   + +    +Y   EE  ++ VR+    +E G        + +R+ 
Sbjct: 875 WHTVRFDPVSNSYTNIDGQTHLLKYKDTEEGYIDNVRIFG--SETGGDPCQAISVKFRVP 932

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R P +GDKF+SR GQKG+CS  WPA D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 933 RKPVIGDKFSSRHGQKGVCSQLWPATDMPFSETGIQPDIIINPHAFPSRMTIGMF 987



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVR 1071


>gi|452840518|gb|EME42456.1| hypothetical protein DOTSEDRAFT_155234 [Dothistroma septosporum
           NZE10]
          Length = 1207

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 345/1002 (34%), Positives = 516/1002 (51%), Gaps = 149/1002 (14%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF-----EIYGKT-- 102
           F  PP K++ +  L     PH+ S++++  +G  L  A++DI    F      I  +   
Sbjct: 20  FRNPPGKKSAYPQLQDAIKPHVESWNYIFADGGQLSHALKDIGTKTFLDGDPRIAAQDGA 79

Query: 103 ----LKLNIVKAAISEPKVPAG-PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
               L+L + +  + +  +PA         +  P E R+    Y G F   + +  +   
Sbjct: 80  RRNRLQLRLKQLYLEKSTLPASNKTQADKREILPVECRERHCTYRGRFRGRLEYRINDGE 139

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                ++ G +PIML+S RCHL  L+P +L+ R E  +E GGYFIV G EKL+R+LI NR
Sbjct: 140 WAETVRDFGHLPIMLRSNRCHLEGLSPKELVNRREETEELGGYFIVNGIEKLIRMLIVNR 199

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN P+A+ R +++NRG  ++   V IRSV++D+++ +N LH++ +G+  F FS RK+  L
Sbjct: 200 RNFPLALIRPSFENRGATYTKFAVQIRSVRKDQTSQSNTLHYLNDGNVIFRFSWRKNEYL 259

Query: 278 LGMMQSLHE----------EGI-------------------------------HTQHDSK 296
           + +M  L            EGI                               H +  ++
Sbjct: 260 VPVMLVLKALVETNDREIFEGIVGPAGGKGLESRQFVTDRVEHLLRTFKAFPLHGKAKAR 319

Query: 297 VFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKL 349
            + G  F+  L      L++ E     +   +LPHL  Y        DKF  L  MT KL
Sbjct: 320 AYIGAKFRPVLNVP-EALSDQEAGTEFVRKIVLPHLGSYDVTEAQDNDKFRMLVFMTRKL 378

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS-------GTSAVLKESDIYAAFR 402
           + + +G   LD+ D++  QEI+  G L+  ++K++          T  +    + Y  F 
Sbjct: 379 YSLAEGECTLDNPDAVQNQEILLPGFLFGMIIKEQVEEWLNSIGDTLRIYGRVNQYPLFT 438

Query: 403 ASSIE----------------SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
           +   E                  +  F++TGN+ +   S L L Q SGF ++AE IN  R
Sbjct: 439 SKEFEKDFMAKVVRRTNENLGQKLDYFMSTGNLLS--PSGLDLQQVSGFTVVAEKINFYR 496

Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
           ++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C +S   
Sbjct: 497 FISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCLVS--T 554

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
            +   + +P+++  LG   ++ +  +  E +++V LDGRI+G+   + A  +   LR  K
Sbjct: 555 DNTDASHVPALIAQLG---VSSMADAKLEDSVVVQLDGRILGFCSPKQAKVISDTLRYWK 611

Query: 567 IVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LE+  +  P    G YPGL++F+   RMLRPV  L  G  + +G FEQ F
Sbjct: 612 VEGTHHVPVDLELGLI--PLSNGGQYPGLFMFSEAARMLRPVKYLPLGKQDIVGPFEQPF 669

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I  T  E     +TH E   T+ LS +AN  P  + NQSPRNMYQCQMGKQTMGTP  
Sbjct: 670 MSIACTDPEIASNDSTHVEYDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGT 729

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             +Y+   K YRLQT  +P  R   ++   +DNFP GTNA+VAVISYTGYDM+DAMILNK
Sbjct: 730 ALKYRTDNKSYRLQTGQTPVVRAPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNK 789

Query: 746 SSYERGFAHGCIFKSMFIEL----ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           S++ERGF HG I+K+  I+L    + G    G   ++     S+++A             
Sbjct: 790 SAHERGFGHGTIYKAKKIDLAEENKQGRGRSGITHVFGFAPNSIIKAS------------ 837

Query: 802 HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE-----------RDPMYSYWK 850
                 W+               + L  DGL  +G K+ E           +DP+   + 
Sbjct: 838 ------WR---------------ETLDDDGLGRIGWKVKEGDAIAASYSVVKDPLTGDYV 876

Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP-NCAYIGYRIQRNPTVGDKFASRA 909
             +      +Y   EE  +E +++     E G+  P     I +RI R+P +GDKF+SR 
Sbjct: 877 NQDGITHIHKYKESEEAFIEEIKLIG--NESGNNDPCQAVSIRFRIPRSPVIGDKFSSRH 934

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG+CS KWP  D+PFT+SG+ PD++ NPH FPSRMTIG  
Sbjct: 935 GQKGVCSQKWPMIDMPFTESGMQPDVIINPHAFPSRMTIGMF 976



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +GYNYYG E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +      P        
Sbjct: 1018 AGYNYYGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKYQVRTTGPVTPLTGQPIKG 1077

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                G + VG    ERD + ++      ++R + C    K  +C
Sbjct: 1078 RAKGGGIRVGEM--ERDSLIAHGTAFLLQDRLMNCSDYTKAHVC 1119


>gi|343427009|emb|CBQ70537.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
            [Sporisorium reilianum SRZ2]
          Length = 1290

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 341/970 (35%), Positives = 504/970 (51%), Gaps = 123/970 (12%)

Query: 67   TLGAPHIASFDFMLDEG---LDLAVEDIAP-IEFEIYGK---------TLKLNIVKAAIS 113
            +L  P  A+    ++EG   L+ ++  +AP I F+  G          TL+++ V   +S
Sbjct: 98   SLDPPASATVSGFVNEGTGLLEKSLRRLAPRIVFDGQGDANNGLGNRITLRMDSVN--LS 155

Query: 114  EPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLK 173
            +P V     G+   + +PTEAR+    Y+G     + WS +G    +    +G  P++++
Sbjct: 156  KPLVNERAKGVRERRVFPTEARERLFTYTGKLTARLCWSVNGDPEQSDIVSLGNCPVLVR 215

Query: 174  SKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRG 233
            S RC+LR ++  +L+   E  +E+GGY++V G+E+L+R LI  + N P AI+R +++ RG
Sbjct: 216  SNRCNLRGMSSRELVAHHEESNEFGGYYLVNGNERLIRYLIVAKANSPQAIERPSFEKRG 275

Query: 234  LLFSDLGVYIRSVKRDE-SATNNVLHFVTNGSARFMFSHRKS-------MCLLGMMQSLH 285
              +S+  + IR + +D+  +  N +H++ NG     FS RK        M L  ++ +  
Sbjct: 276  PSYSNKAIVIRCLHKDDLISVTNAVHYLHNGGLTLRFSWRKQEYMVPVVMVLKALVDATD 335

Query: 286  EEGIHTQHDSKVFFGQIFKEKLQYDLRHL-----------------------------NE 316
            +E I        F      ++++  LR+                              N+
Sbjct: 336  KE-IFASIVQGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGSKFRVVLGCPEDWND 394

Query: 317  VEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL 376
             ++   ++    L HLD   +KF  L  M  KL+ +V G    D+ DS    EI+  G L
Sbjct: 395  AQVGSELIHRIFLVHLDSPREKFKMLIFMIQKLYSLVAGESCADNADSPQHHEILMPGFL 454

Query: 377  YLQLLKK---EKSGTSAVLKESDIYAAFRA-----------------SSIESAMTNFLAT 416
              Q++K+   E  G        D+    +                    I   + +FLAT
Sbjct: 455  VGQIIKERIDEAVGNIRAQIARDVRMKVKGLDFYDTRYVKKTVSKVNIDIGVKIASFLAT 514

Query: 417  GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
            GN+S+   S L L Q SGF IMAE +N  RY++HFR+VHRG++F E++++  R+L  +AW
Sbjct: 515  GNLSS--PSGLDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAW 572

Query: 477  GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI------ 530
            GF+CPVHTPDG+PCGLLNH +  C+++   P   ++ I ++L  LGM      +      
Sbjct: 573  GFLCPVHTPDGSPCGLLNHFSHTCRMTTRQPD--VSHIHALLSGLGMTEAAFAVGAVGAA 630

Query: 531  ------QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKR 583
                   +  +  ++V LDG I+GY    +A  +   LR+ K  G   +P  LEI ++  
Sbjct: 631  AQKSSGANASDNVVVVQLDGAILGYTTPALAKHMATALRIWKTEGLHHVPLDLEIGFV-- 688

Query: 584  PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
            P    G YPGLYLF+   RMLRPV  L    I+ +G FEQV++DI     E  PGI+TH 
Sbjct: 689  PTSRAGQYPGLYLFSNRARMLRPVRLLHNNRIDLVGPFEQVYLDIACDPSEIIPGISTHV 748

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            EL+ T  LS LANL P  D NQSPRN+YQ QM KQTMGT   +   +   KLYR+QTP +
Sbjct: 749  ELAPTSILSVLANLTPFSDYNQSPRNVYQAQMMKQTMGTASTSVSRRTDNKLYRIQTPQT 808

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  R   Y+    D++P GTNA+VAVISYTGYDMEDAMILNKS++ERGF +G ++KS  +
Sbjct: 809  PVVRNELYNKYGFDDYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSETV 868

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            +L              G   S     + FG     R                   A +A+
Sbjct: 869  DLRD----------LKGKASSSSVPTLHFGFAPNSRPTE----------------AQRAI 902

Query: 824  EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             D+   DGL YVG K+   +P+ +YW E   + +  ++ G E   V+ VR+       G 
Sbjct: 903  LDQ---DGLPYVGQKVLAGEPICAYWDEVSGKTMFKKFKGDEYAYVDTVRLLGSDAGSGG 959

Query: 884  VTPNC--AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                C    I  RI R+P +GDKF+SR GQKG+CS KWPA D+PF++SG+ PD++ NPH 
Sbjct: 960  GDSECQKVQIMLRITRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFSESGMQPDVIINPHA 1019

Query: 942  FPSRMTIGFL 951
            FPSRMTIG L
Sbjct: 1020 FPSRMTIGML 1029



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYN+ G E MYSG+ G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1069 AGYNHVGNEPMYSGITGQELRADIYLGVVYYQRLRHMVNDKFQVR 1113


>gi|449458081|ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
           sativus]
          Length = 1173

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 355/979 (36%), Positives = 497/979 (50%), Gaps = 136/979 (13%)

Query: 63  EFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF--EIYGKTLKLNIVKAAISEPKVPAG 120
           E L  L   HI SFD ++D GL+  +  I P+E       K L++ + K  +  P+    
Sbjct: 12  EALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERN 71

Query: 121 PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR 180
              I      P E RQ +  Y+G F   V + +D KA        G+ PIMLKSK CHLR
Sbjct: 72  LRTIR-EALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLR 130

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLG 240
            L P +L+   E   E GGYF++ G E++VRLLI  +RN+P ++ RN++ +R   ++D  
Sbjct: 131 GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKA 190

Query: 241 VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHD------ 294
           V IR V+ D+S+    L+++ NGSAR  F  +    LL +   L      T H+      
Sbjct: 191 VVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLT 250

Query: 295 ----------------------SKVFFGQI-------FKEKLQYDLRHLNEV-------- 317
                                 +K+   ++        ++ L +  +H   V        
Sbjct: 251 SCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEK 310

Query: 318 --EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG- 374
              + D +L + I  HLD+ +DKF  L  M  KLF ++      D+ DS+  Q+++  G 
Sbjct: 311 FSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQ 370

Query: 375 --SLYLQ------------LLKKEKSGTS------AVLKESDIYAAFRASSIESAMTNFL 414
             +LYL+            LL+ E S  S      ++     +     +  + SA+ N L
Sbjct: 371 LITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENML 430

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
            TG +     + L L Q +GF + AE +N +R++SHFRAVHRG+ F  +R++  R+L  +
Sbjct: 431 KTGRLVT--QTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPE 488

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPSVLVSLGMLPL 526
           +WGF+CPVHTPDG PCGLLNHLT+ C+I+ +  S        K+   I SVL+++GM+P 
Sbjct: 489 SWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPS 548

Query: 527 TP-VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
            P ++Q      L V+LDGRIVGYI       +V  LR LK++    IP  LE+ Y+  P
Sbjct: 549 LPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYV--P 606

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAG-----NIEWIGTFEQVFMDI-CIT-----MK 633
               G YPGLYLFT P R +RPV NL+       NIE IG FEQVFM+I C        K
Sbjct: 607 LSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRK 666

Query: 634 EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
           + +P   TH E+  T  LS +ANL P  D NQSPRNMYQCQM KQTM       RY+   
Sbjct: 667 DEFPA--THEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQ 724

Query: 694 KLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
           KLY LQTP +P  R   Y   ++D +P GTNAIVAV++YTGYDMEDAMILNKSS ERG  
Sbjct: 725 KLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMF 784

Query: 754 HGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
           HG I+++  I+L    N                                      +++  
Sbjct: 785 HGQIYQTETIDLSDQGNRSS-----------------------------------RSQKM 809

Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
           F R   + ++   +  DGL YVG  +   +P  S + E      T +  G E + V+ V 
Sbjct: 810 FRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVS 869

Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLV 932
           +           P    I +R  RNP +GDKF+SR GQKG+CS  WP  D+PF   +G+ 
Sbjct: 870 VDV----KNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMR 925

Query: 933 PDIVFNPHGFPSRMTIGFL 951
           PD++ NPH FPSRMTI  L
Sbjct: 926 PDLIINPHAFPSRMTIAML 944



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 37/47 (78%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++ G+NY+G E +YSGV G+ +  +IF G V+YQRLRHMVSDK+Q +
Sbjct: 993  IKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVR 1039


>gi|116181610|ref|XP_001220654.1| hypothetical protein CHGG_01433 [Chaetomium globosum CBS 148.51]
 gi|88185730|gb|EAQ93198.1| hypothetical protein CHGG_01433 [Chaetomium globosum CBS 148.51]
          Length = 1188

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 331/876 (37%), Positives = 486/876 (55%), Gaps = 130/876 (14%)

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
           F +E+G++PIM+KS +CHL N +PA L++R E  +E GGYFIV G EK++RLL+ NRRN 
Sbjct: 99  FVRELGQMPIMIKSNKCHLENNSPALLVQRKEESEELGGYFIVNGIEKIIRLLLVNRRNF 158

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS------ 274
           P+AI R ++ NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+      
Sbjct: 159 PLAIIRPSFTNRGPSYTPYGIIVRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLVPV 218

Query: 275 -MCLLGMMQSLHEE---------------------------------GIHTQHDSKVFFG 300
            M L  ++++   E                                 G++T+  ++ + G
Sbjct: 219 MMILKALIETNDREIFEGLVGPPNSKGIENTFLTDRVELLLRTYKTYGLYTKTQTRAYLG 278

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTCKLFHVV 353
           + F+  L      +++ E+    L   +L +L       +   DKF  L  M  KL+ +V
Sbjct: 279 EKFRVVLGVP-ETMSDYEVGTEFLRRIVLVNLGCVDVTEEQDLDKFKMLLFMCRKLYALV 337

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------------KSGTSAV 391
            G   +D+ D++  QEI+ GG LY  +LK+                       +S TS+ 
Sbjct: 338 AGDCAVDNPDAVQNQEILLGGFLYGMVLKERLDELLSVSLRLALRDYLRRNPSQSFTSSG 397

Query: 392 LKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
             +    A FR ++  + +A+  FL+TGN+ +   S L L Q SGF ++AE +N +R++S
Sbjct: 398 FTKDFPIAIFRRTNENLGNALEYFLSTGNLQS--PSGLDLQQTSGFTVVAEKLNFLRFIS 455

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           HFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH+   C+I     S 
Sbjct: 456 HFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHMAHKCKI--ITDSV 513

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
            ++ +P V + LG+   +    S   ++++VMLDGRI+G+     A ++   LR  K+ G
Sbjct: 514 DVSAVPGVAMELGVNDYSSAATS---ESVVVMLDGRIIGWCTPNAAKAVADNLRRWKVEG 570

Query: 570 -EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI 628
              IP  LEI Y+  P KG G YPG+Y+ +   RM+RPV  L  G  +++G  EQ +M I
Sbjct: 571 GHGIPILLEIGYVP-PSKG-GSYPGIYMSSQSSRMVRPVKYLPLGKEDFVGPHEQPYMSI 628

Query: 629 CITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
             T  E  PG +TH E   T  LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP    R
Sbjct: 629 ACTDGEVLPGDSTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALR 688

Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
           ++   K+YRLQT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMI+NKS++
Sbjct: 689 HRTDNKMYRLQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAH 748

Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTET---MYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           ERGF HG I+K+  + L+       ++T   M+    GS ++A                S
Sbjct: 749 ERGFGHGTIYKTKKVSLKDDSRTRTSKTISKMFGFAPGSPVRA----------------S 792

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE-------NRYVT 858
           D+                 + L  DGL YVG  + E D + ++   S        NR   
Sbjct: 793 DR-----------------EMLDEDGLPYVGRLVREGDILCAWHTVSADYSGQLINRDGI 835

Query: 859 C---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGIC 915
               RY   E+  +E VR+    ++ G+       I  RI R+P +GDKF+SR GQKG+ 
Sbjct: 836 THWERYKEAEDAFIEEVRVIG--SDSGTEPLQTVSIKLRIPRSPIIGDKFSSRHGQKGVA 893

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           S KWPA D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 894 SQKWPAIDMPFSETGIQPDVIINPHAFPSRMTIGMF 929



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GYNY+G E MYSG+ G      I+ GVV+YQRLRHMV+DK+Q +      P      
Sbjct: 967  MKAGYNYHGNEPMYSGITGEEFACDIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPI 1026

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                  G + VG    ERD + ++      ++R + C    K  +C
Sbjct: 1027 KGRKKGGGIRVGEM--ERDALLAHGTAFLLQDRLLNCSDYSKSWIC 1070


>gi|302825794|ref|XP_002994479.1| hypothetical protein SELMODRAFT_270143 [Selaginella moellendorffii]
 gi|300137562|gb|EFJ04457.1| hypothetical protein SELMODRAFT_270143 [Selaginella moellendorffii]
          Length = 1172

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 364/983 (37%), Positives = 516/983 (52%), Gaps = 148/983 (15%)

Query: 57  PPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT-------------L 103
           P     + L  L +PHI SFD+ +  GL  AV+ IAP+E E  G T              
Sbjct: 21  PDSAAYKALEDLVSPHIDSFDYFVQRGLVEAVKGIAPVEIE-QGSTGNKLIYILWMNFGF 79

Query: 104 KLNIVKAAISEPKVPAGPVG-----IHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
            L++V A   +  V   PV         ++  P E RQ    Y+G  N+ +   +     
Sbjct: 80  SLDVVLALTLDKPVVQPPVKDLKEKAMEHRLLPKECRQGFLSYTGALNIQLILDY----- 134

Query: 159 GTFTKE----VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
           G+ T+     +G++PIMLKS  CHLR L+P +LI   E   E GGYFIV G E+++R+LI
Sbjct: 135 GSMTRHHQLSLGKLPIMLKSSLCHLRGLSPQKLISLKEEGTEMGGYFIVKGIERIIRMLI 194

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS 274
             +RNH IAI+RNA++NRG  FSD+G+ +R V+ D++ +   L+++ +G+AR  F  R+ 
Sbjct: 195 VPKRNHIIAIRRNAFQNRGAGFSDIGLMMRCVRPDQTGSTIKLYYLHHGTARLGFVIRRQ 254

Query: 275 -------MCLLGMMQSLHEE------GIHTQ--HDSKVFFG--------QIFKEKLQYD- 310
                  + L   M +   E      GIH Q    SK   G        +I  E+ Q   
Sbjct: 255 EFVIPVGIILKAFMDTSDREIFEQLSGIHVQGQEQSKGAVGSQLISQRARIIIEETQRQP 314

Query: 311 -LRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQE 369
            L  L+ +   + +L   +  HLD++ DKF  L HM  KLF VV G   +DS D++  QE
Sbjct: 315 CLTRLDCLRYIEDVLRRFVFVHLDNFRDKFNLLIHMLHKLFAVVDGSASIDSSDTLQHQE 374

Query: 370 IMTGGSL---YLQ------------LLKKEK--------SGTSAVLKESDIYAAFRASSI 406
           ++  G L   YL+            LL++E         S  + VLK   I     A  I
Sbjct: 375 LLLPGHLMNIYLKDRLEDWLYRCKRLLQREMQLKEEFDLSDHAKVLK---IVEKNNAVDI 431

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
              +   L+TGN+ +   S + L QA+GF ++AE +N  R++SHFR+VHRG++F   R++
Sbjct: 432 GKRIEYLLSTGNIQS--QSHMDLQQANGFSVVAEKLNFFRFISHFRSVHRGAFFARQRTT 489

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI--------PSKVLAQIPSVL 518
             R+L  ++WGF+CPVHTPDG PCGLL HL++ C+IS  +        P  +   I +VL
Sbjct: 490 SVRKLLPESWGFLCPVHTPDGEPCGLLTHLSSLCKISTDLDQNNHPKDPKVIHRTIATVL 549

Query: 519 VSLGMLPLTPVIQ-SIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLE 577
             LGM+ ++P++  S P + L V+LDG ++GY+        V  LR LK+     P  LE
Sbjct: 550 AQLGMVSISPLLALSGPPKYLAVLLDGCVLGYMPVGNIPQTVSHLRSLKV-----PIDLE 604

Query: 578 IVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI-------CI 630
           I Y+  P    G YPGL+L+T P R LRPV  L  G IE I  FEQ +M+I       C 
Sbjct: 605 IGYV--PCTYAGAYPGLFLYTTPSRFLRPVKQLDTGAIELISAFEQAYMEIACPDGGNCG 662

Query: 631 TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ 690
               A P   TH EL  T  LS +A+  P  D NQSPRNMYQCQMGKQT+G      +++
Sbjct: 663 RTPSAPPA--THIELHPTAMLSVVASSTPWSDHNQSPRNMYQCQMGKQTLGFASQALKFR 720

Query: 691 GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYER 750
              K+Y LQ P SP  R V+Y   +MD FP+GTNA+VAV++YTG+DMEDAMI+NKSS ER
Sbjct: 721 TDHKMYNLQNPQSPVARNVNYKKYNMDEFPLGTNAVVAVLAYTGFDMEDAMIMNKSSMER 780

Query: 751 GFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQT 810
           G AHG I+K+  ++L                  S++Q +   G+V               
Sbjct: 781 GLAHGQIYKTEHVDL------------------SLLQKK-SDGIV--------------- 806

Query: 811 KDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVE 870
            + F R    + + + L  DGL ++G  ++  DP  S            +    E + ++
Sbjct: 807 -NLFSRPTGKRNIHNFLDVDGLPHIGQTMHNGDPYCSVLNTMTGDAKLHKLKAAENVVID 865

Query: 871 -VVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD- 928
            V+ +  G      +      + +R  RNP +GDKF+SR GQKGI S  WP  D+PF+  
Sbjct: 866 SVIAIGHGRDPLQKIA-----VKFRHDRNPVIGDKFSSRHGQKGILSQLWPDIDMPFSAV 920

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           +G+ PDI+ NPH FPSRMTIG L
Sbjct: 921 TGMRPDIIINPHAFPSRMTIGML 943



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            + G+NY+GTE MYSG+ G+ +  +IF GVV+YQRLRHMVSDK+Q +     +P  +
Sbjct: 1001 QHGFNYHGTEVMYSGLLGTELTCEIFIGVVYYQRLRHMVSDKFQVRSLGAINPVTR 1056


>gi|221043492|dbj|BAH13423.1| unnamed protein product [Homo sapiens]
          Length = 924

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 313/763 (41%), Positives = 430/763 (56%), Gaps = 99/763 (12%)

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL------------------------ 278
           +  V+ + SA N  LH++ NG+    F +RK +  L                        
Sbjct: 1   MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKG 60

Query: 279 ------------GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTN 326
                        M++ + EEG  TQ     + G+ F+ KL     + NE +  +++   
Sbjct: 61  KEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGECFRVKLNVPDWYPNE-QAAEFLFNQ 119

Query: 327 CILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS 386
           CI  HL    +KF  L  MT KLF + +G    D+ DS++ QE++T G L+L  LK++  
Sbjct: 120 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 179

Query: 387 G---------------TSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLM 430
           G               TS  +   ++   F     +        ATGN+ +   + L L+
Sbjct: 180 GWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS--KTGLGLL 237

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF+CPVHTPDG PC
Sbjct: 238 QDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPC 297

Query: 491 GLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
           GL+NHLT  C++ ++++ +   A IP++L +LG+ P+         +   V+LDG +VG+
Sbjct: 298 GLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGW 354

Query: 550 ILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
           +   +A  +   LR  K++ EK IP  +E+V +    K   LYPGL+LFT P R++RPV 
Sbjct: 355 VDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQ 413

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
           NLA G  E IGT EQ+FM++ I   E + G+TTH+EL     LS +AN IP  D NQSPR
Sbjct: 414 NLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPR 473

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           NMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVA
Sbjct: 474 NMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 533

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           VISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E +  G D S++  
Sbjct: 534 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV-- 582

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
                                    FG  P +  +  KL  DGL ++GAKL   DP YSY
Sbjct: 583 -------------------------FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSY 617

Query: 849 WKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASR 908
              +        Y  KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKFASR
Sbjct: 618 LNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASR 675

Query: 909 AGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 676 RGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 718



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 758 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 817

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 818 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 871


>gi|388851719|emb|CCF54715.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
            [Ustilago hordei]
          Length = 1289

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 332/922 (36%), Positives = 482/922 (52%), Gaps = 107/922 (11%)

Query: 100  GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
            G  + L +    +S+P V     G+   + +PTEAR+    Y+G     + WS +G    
Sbjct: 142  GNRITLRMDSVNLSKPLVNDRAKGVRERRVFPTEARERLFTYTGKLTARLCWSVNGDPEQ 201

Query: 160  TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
            +    +G  P++++S RC+LR ++  +L+   E  +E+GGYF+V G+E+L+R LI  + N
Sbjct: 202  SEIVALGNCPVLVRSNRCNLRGMSSRELVAHHEEANEFGGYFLVNGNERLIRYLIVAKAN 261

Query: 220  HPIAIKRNAWKNRGLLFSDLGVYIRSV-KRDESATNNVLHFVTNGSARFMFSHRKS---- 274
             P AI+R +++ RG  +S+  + IR + K D  +  N +H++ NG     FS RK     
Sbjct: 262  SPQAIERPSFEKRGPSYSNKAIVIRCLHKEDLISVTNAVHYLHNGGLTLRFSWRKQEYMV 321

Query: 275  ---MCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNE--------------- 316
               M L  ++ +  +E I        F      ++++  LR+  +               
Sbjct: 322  PVVMVLKALVDATDKE-IFASIVQGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGS 380

Query: 317  --------------VEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
                           ++   ++    L HLD   +K+  L  M  KL+ +V G    D+ 
Sbjct: 381  KFRVVLGCPEDWTDAQVGSELIHRIFLVHLDSPREKYKMLIFMVQKLYSLVAGESCADNA 440

Query: 363  DSIMLQEIMTGGSLYLQLLKK---EKSGT---------SAVLKESDIYAAFRAS------ 404
            DS    EI+  G L  Q++K+   E  G             LK  D Y +          
Sbjct: 441  DSPQHHEILMPGFLVGQIIKERIDEAVGNIRSQIARDVRMKLKGVDFYDSRYIKKTIAKV 500

Query: 405  --SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
               I   + +FLATGN+S+   S L L Q SGF IMAE +N  RY++HFR+VHRG++F E
Sbjct: 501  NIDIGVKIASFLATGNLSS--PSGLDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAE 558

Query: 463  MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
            ++++  R+L  +AWGF+CPVHTPDG+PCGLLNH +  C+++   P   ++ I ++L  LG
Sbjct: 559  LKTTSVRKLLPEAWGFLCPVHTPDGSPCGLLNHFSHTCRMTTRQPG--VSHIHALLSGLG 616

Query: 523  MLPLTPVI----------QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EK 571
            M      +            + +  ++V LDG ++GY    +A  +   LR+ K  G   
Sbjct: 617  MTEAAFAVGAVGAVGQKHAGVRDNIVVVQLDGAVLGYTTPALAKHMATALRIWKTEGLHH 676

Query: 572  IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
            +P  LEI ++  P    G YPGLYLF+   RM+RPV  L    I+ +G FEQV++DI   
Sbjct: 677  VPLDLEIGFV--PTSRAGQYPGLYLFSSRARMMRPVRLLHNNKIDMVGPFEQVYLDIACD 734

Query: 632  MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
              E  PG++TH EL+ T  LS LANL P  D NQSPRN YQ QM KQTMGT       + 
Sbjct: 735  PAEIVPGVSTHVELAPTSILSVLANLTPFSDYNQSPRNCYQAQMMKQTMGTASTAVGRRT 794

Query: 692  VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
              KLYR+QTP +P  RP  Y+    D++P GTNAIVAVISYTGYDMEDAMILNKS++ERG
Sbjct: 795  DNKLYRIQTPQTPVVRPELYNKYAFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAHERG 854

Query: 752  FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            F +G ++KS  I+L              G   S +    F    +Y+             
Sbjct: 855  FGYGTVYKSETIDLRD----------LKGKSSSSVPTLHFGFAPNYK------------- 891

Query: 812  DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEV 871
                   A++A  + L  DGL YVG K+   +P+ +YW E   +    ++ G E   V+ 
Sbjct: 892  -------ASEAQRNILDQDGLPYVGQKVLAGEPICAYWDEVSGKTQFKKFKGDEYAYVDT 944

Query: 872  VRM--SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
            VR+  S     GG        I  RI R+P +GDKF+SR GQKG+CS KWPA D+PF++S
Sbjct: 945  VRLLGSDAGMGGGDGECQKVQIMLRITRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFSES 1004

Query: 930  GLVPDIVFNPHGFPSRMTIGFL 951
            G+ PD++ NPH FPSRMTIG L
Sbjct: 1005 GMQPDVIINPHAFPSRMTIGML 1026



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYN+ G E MYSG+ G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1066 AGYNHVGNEPMYSGITGQELRADIYLGVVYYQRLRHMVNDKFQVR 1110


>gi|154291829|ref|XP_001546494.1| hypothetical protein BC1G_14991 [Botryotinia fuckeliana B05.10]
          Length = 1207

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 343/1000 (34%), Positives = 524/1000 (52%), Gaps = 145/1000 (14%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY--------- 99
           +K F  PP     +  L    APHI SF+ + ++   L  + +  I  + Y         
Sbjct: 25  EKLFRDPPKDHTAYPALTAAVAPHIESFNALFEKD-GLIAQGLLDIGSKTYLDGDDRLGP 83

Query: 100 -GKT-LKLNIVKAAISEPKVPAG-PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
            GK  L + I +  + +  +PA         +  P E R+    Y G  +  + +S +  
Sbjct: 84  GGKNKLTVRIKEVFVEKSMLPASNKFSTKNREILPAECRERHVTYRGKMSARMEYSINNG 143

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
               F +++G++P+ML S +CHL+N +PAQL+++ E  +E GGYF+V G EK++RLL+ N
Sbjct: 144 DPKEFIRDLGQLPLMLMSNKCHLQNNSPAQLVQKKEESEELGGYFVVNGIEKIIRLLVVN 203

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-- 274
           RRN P+AI R ++K RG  +++ G+ IRSV+ D+++  NVLH++ +G+  F FS RK+  
Sbjct: 204 RRNFPMAIIRPSFKGRGPTYTEFGMLIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEF 263

Query: 275 -----MCLLGMMQSLHEE---------------------------------GIHTQHDSK 296
                M L  ++++  +E                                 G++T+  ++
Sbjct: 264 LVPAMMILKALVETNDKEIFEGLVGAAGSKGAENTFLTDRVELLLRTYKAYGLYTKSKTR 323

Query: 297 VFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKL 349
            + G+ F+  L      ++  ++    L   +L HL +         DKF  L  MT KL
Sbjct: 324 AYLGEKFRIVLGVP-DTMSNYDVGTEFLRKIVLVHLGNTDVTEAQDKDKFKMLLFMTRKL 382

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS----------------------- 386
           + +V G    D+ D++  QEI+ GG L+  ++K+                          
Sbjct: 383 YSLVAGDCAGDNPDAVQNQEILLGGFLFGMIIKERLEDWLHTSLRMALRDYVRRSPENNF 442

Query: 387 GTSAVLKESDIYAAFRASS-IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
            T   LK+  +    R +  +  A+  F++TGN+ +   + L L Q SGF ++AE IN +
Sbjct: 443 ATPEFLKDFPVKICSRTNEQVGGALEYFMSTGNLVS--PTGLDLQQTSGFTVVAEKINFL 500

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
           R+++HFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C I  +
Sbjct: 501 RFIAHFRMIHRGSFFAQLKTTTVRKLLPESWGFMCPVHTPDGSPCGLLNHLSHKCIILTH 560

Query: 506 IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
             +  ++ +P +L  LG++       S  +++++V LDG+I+G+   + +  +   LR  
Sbjct: 561 --ASDVSALPKLLSELGVVSTG---SSSTDESVVVQLDGKIMGWCSPKQSLVIADTLRYW 615

Query: 566 KIVGEK---IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFE 622
           K+  EK   +P +LEI Y+  P    G YPG+YL   P RM+RPV  L     +++G  E
Sbjct: 616 KV--EKTHGVPTNLEIGYI--PNSHGGQYPGIYLSAAPARMVRPVKYLPLDKEDFVGPLE 671

Query: 623 QVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
           Q FM I +T +E   G  TH E   T  LS LAN+ P  D NQSPRNMYQCQMGKQ+MGT
Sbjct: 672 QPFMSIAVTEQEIESGEHTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQSMGT 731

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
           P    RY+   K YRLQT  +P  R   ++    DNFP G N++VAVISYTGYDM+DAMI
Sbjct: 732 PGTAIRYRTDNKAYRLQTGQTPIVRAPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMI 791

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           +NKS++ERGF HG I+K+   ELE G+     + +           +  FG         
Sbjct: 792 INKSAHERGFGHGTIYKTKKYELEEGHKSRSAKNI-----------KKLFGFAP----GG 836

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVT 858
           +V  +W            KA  D+   DGL ++G  +   D + + W     +   +YV 
Sbjct: 837 LVKAEW------------KAAIDE---DGLPFIGRMVQNGD-LIAAWHTVSMDENGKYVN 880

Query: 859 C-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
                   +Y   E   +E VR+     E G        +  RI R+P +GDKF+SR GQ
Sbjct: 881 RDGQTHFEKYKETEIAFIEEVRLIG--NENGIEPCQAISVKLRIPRSPVIGDKFSSRHGQ 938

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG+CS KWPA D+PFT+SG+ PD + NPH FPSRMTIG  
Sbjct: 939 KGVCSQKWPAVDMPFTESGIQPDTIINPHAFPSRMTIGMF 978



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNYYG E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1016 MKAGYNYYGNEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKYQVR 1062


>gi|402891940|ref|XP_003909186.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 5
           [Papio anubis]
          Length = 924

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 311/763 (40%), Positives = 430/763 (56%), Gaps = 99/763 (12%)

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL------------------------ 278
           +  V+ + SA N  LH++ NG+    F +RK +  L                        
Sbjct: 1   MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKG 60

Query: 279 ------------GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTN 326
                        M++ + EEG  TQ     + G+ F+ KL     + NE +  +++   
Sbjct: 61  KEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNE-QAAEFLFNQ 119

Query: 327 CILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS 386
           CI  HL    +KF  L  MT KLF + +G    D+ DS++ QE++T G L+L  LK++  
Sbjct: 120 CICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 179

Query: 387 G---------------TSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLM 430
           G               T+  +   ++   F     +        ATGN+ +   + L L+
Sbjct: 180 GWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS--KTGLGLL 237

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF+CPVHTPDG PC
Sbjct: 238 QNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPC 297

Query: 491 GLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
           GL+NHLT  C++ ++++ +   A IP++L +LG+ P+         +   V+LDG +VG+
Sbjct: 298 GLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPVDGAPHRPYSECYPVLLDGVMVGW 354

Query: 550 ILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
           +  ++A  +   LR  K++ EK IP  +E+V +    K   LYPGL+LFT P R++RPV 
Sbjct: 355 VDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQ 413

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
           NL  G  E IGT EQ+FM++ I   E + G+TTH+EL     LS +AN IP  D NQSPR
Sbjct: 414 NLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPR 473

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           NMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVA
Sbjct: 474 NMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVA 533

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           VISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E +  G D S++  
Sbjct: 534 VISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV-- 582

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
                                    FG  P +  +  KL  DGL ++GAKL   DP YSY
Sbjct: 583 -------------------------FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSY 617

Query: 849 WKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASR 908
              +        Y  KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKFASR
Sbjct: 618 LNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASR 675

Query: 909 AGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 676 HGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 718



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 758 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 817

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 818 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 871


>gi|443895297|dbj|GAC72643.1| RNA polymerase I, second largest subunit [Pseudozyma antarctica T-34]
          Length = 1282

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 352/1010 (34%), Positives = 521/1010 (51%), Gaps = 146/1010 (14%)

Query: 38   QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFM-----------------L 80
            Q   SAP     TDK F  P       L  L AP+I SF+ +                  
Sbjct: 62   QERYSAP-----TDKGFVAPE------LTELVAPNIESFNALWAEDPSLDPPASAVGGFY 110

Query: 81   DEGLDL---AVEDIAP-IEFEIYGK---------TLKLNIVKAAISEPKVPAGPVGIHFN 127
            +EG+ L   ++  +AP I F+  G          TL+++ V   +S+P V     G+   
Sbjct: 111  NEGVGLLEKSLRRLAPRIVFDGQGDANGGLGNRITLRMDSVN--LSKPLVNDRAKGVRER 168

Query: 128  KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
            + +P+EAR+    Y+G     + WS +G    +    +G  P++++S RC+LR ++  +L
Sbjct: 169  RVFPSEARERLFTYTGKLTARLCWSVNGDPEQSEIVALGNCPVLVRSNRCNLRGMSSREL 228

Query: 188  IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
            +   E  +E+GGY++V G+E+L+R LI  + N P AI+R +++ RG  +S+  + IR + 
Sbjct: 229  VAHHEEANEFGGYYLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLH 288

Query: 248  RDE-SATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVF-------F 299
            RD+  +  N +H++ NG     FS RK   ++ ++  L  + +    D ++F       F
Sbjct: 289  RDDLISVTNAVHYLHNGGLTLRFSWRKQEYMVPVVMVL--KALVDATDKEIFASIVQGDF 346

Query: 300  GQIF-KEKLQYDLRHLNE-----------------------------VEICDYMLTNCIL 329
               F  ++++  LR+  +                              ++   ++    L
Sbjct: 347  DNTFLTDRVELLLRNFKQYTLWSGHQCLEYLGSKFRVVLGCPEDWTDAQVGSELIHRIFL 406

Query: 330  PHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK---EKS 386
             HLD   +K+  L  M  KL+ +V G    D+ DS    EI+  G L  Q++K+   E  
Sbjct: 407  VHLDSPREKYKMLIFMIQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIVKERIDEAV 466

Query: 387  GTSAV---------LKESDIYAA--FRAS------SIESAMTNFLATGNVSAGKNSTLQL 429
            G             LK  D Y A   + S       I   + +FLATGN+S+   S L L
Sbjct: 467  GNIRAQIARDVRMKLKGVDFYDARYIKKSVAKVNIDIGVKIASFLATGNLSS--PSGLDL 524

Query: 430  MQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
             Q SGF IMAE +N  RY++HFR+VHRG++F E++++  R+L  +AWGF+CPVHTPDG+P
Sbjct: 525  QQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDGSP 584

Query: 490  CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI-----QSIPEQALMVMLDG 544
            CGLLNH +  C+++   P   ++ + ++L SLGM      +         +  ++V LDG
Sbjct: 585  CGLLNHFSHTCRMTTRQPD--VSHLHALLTSLGMTEAAFSVGGGSAHGANKNNIVVQLDG 642

Query: 545  RIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
             I+GY    +A  +   LR+ K  G   +P  LEI ++  P    G YPGLYLF+   RM
Sbjct: 643  AILGYTTPALAKHIATALRIWKTEGLHNVPLDLEIGFV--PTSKSGQYPGLYLFSNRSRM 700

Query: 604  LRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
            +RPV  L    I+ +G +EQV++DI     E   G+++H EL+ T  LS LANL P  D 
Sbjct: 701  IRPVRLLHNNKIDLVGPYEQVYLDIACDPSEIIQGVSSHVELAPTSILSVLANLTPFSDY 760

Query: 664  NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
            NQSPRN+YQ QM KQTMGT       +   KLYR+Q+P +P  RP  Y+    D++P GT
Sbjct: 761  NQSPRNVYQTQMMKQTMGTASTAISRRTDNKLYRIQSPQTPVVRPELYNKYGFDDYPNGT 820

Query: 724  NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
            NAIVAVISYTGYDMEDAMILNKS++ERGF +G ++KS  ++L              G   
Sbjct: 821  NAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSETVDLRD----------LRGKAA 870

Query: 784  SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD 843
            S     + FG     R                   A++A    L  DGL Y+G K+   +
Sbjct: 871  SASVPTLHFGFAPNYR-------------------ASEAQRAILDQDGLPYIGQKVMAGE 911

Query: 844  PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC--AYIGYRIQRNPTV 901
            P+ +YW E   +    ++ G E   V+ VR+       G     C    I  RI R+P +
Sbjct: 912  PICAYWDEVSGKTSFKKFKGDEYAYVDTVRLLGADGGSGGGDSECQKVQIMLRITRSPVI 971

Query: 902  GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            GDKF+SR GQKG+CS KWPA D+PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 972  GDKFSSRHGQKGVCSQKWPAVDMPFSESGMQPDVIINPHAFPSRMTIGML 1021



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYN+ G E MYSG+ G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1061 AGYNHVGNEPMYSGITGQELRADIYLGVVYYQRLRHMVNDKFQVR 1105


>gi|226292175|gb|EEH47595.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides
           brasiliensis Pb18]
          Length = 1242

 Score =  544 bits (1401), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/1008 (33%), Positives = 524/1008 (51%), Gaps = 146/1008 (14%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     +  L     PHI SF+ + D    L+ A++DI    F          
Sbjct: 19  ERLFRHPPKDHTAYPSLAASIRPHIDSFNALFDNDRILEAALKDIGTKSFLDGDVETPEQ 78

Query: 97  -----EIYGKTLKLNIVKAAISEPKVPAG--PVGIHFN----KYYPTEARQTRSVYSGPF 145
                +   +  + N +   I+E  +     P    FN    + YP E R+  + Y G  
Sbjct: 79  KRARLDEGRRAPRRNKLSVRITELFLEKAMLPASNKFNTRNREIYPAECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML+S RC+L   +P QL++  E  +E GGYF+V G
Sbjct: 139 RARLEYRINNGEWKESVRELGQVPIMLRSNRCYLEKCSPEQLVQHKEESEELGGYFVVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI  RRN P+AI R+++  RG  ++  G+ IRSV+ D+++  N LH++++G+ 
Sbjct: 199 NEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPDQTSQTNFLHYLSDGNV 258

Query: 266 RFMFSHRKS-------MCLLGMMQSLHEE------------------------------- 287
            F F+ RK+       M L G++Q+   +                               
Sbjct: 259 TFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLVGHEGSEGIKNSFVTDRVELLLRTYK 318

Query: 288 --GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
             GIH + D + + G+ F+  L       +E    ++ L   +LPHL ++        DK
Sbjct: 319 GYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEF-LRKVVLPHLGNHNVTDSQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-------------- 384
           F  +  M  KL+ +V G    D+ D++  QE++ GG LY  LLK+               
Sbjct: 378 FNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYGMLLKERLEEWLRSFGPIAQE 437

Query: 385 ---KSGTSAVLK---ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGF 435
              K+  +  +    E +  +   A + E+   A+  FL+TGN+ +   + L L Q SG+
Sbjct: 438 WSVKNQNARFIDPKFEKEFLSRIVARTNENIGGALEYFLSTGNLVS--PTGLDLQQPSGY 495

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH
Sbjct: 496 TVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 555

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L   C+I     +  ++ +P ++ +LG   +T       E++++V +DGRI+GY   + A
Sbjct: 556 LAHKCKIE--TSNLDVSGVPQIISNLG---VTSESSVSLEESVVVQMDGRILGYCSPKQA 610

Query: 556 TSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
             +   LR  K+ G K +P  LEI Y+  P    G YPG+YLF+   RM+RPV  L    
Sbjct: 611 RIISDTLRYWKVEGNKSLPVELEIGYV--PNSNRGQYPGIYLFSQCARMVRPVKYLPLDK 668

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           ++++G FEQ FM+I     +   G++TH E   T  LS +AN+ P  D NQSPRNMYQCQ
Sbjct: 669 LDYVGPFEQPFMEIACVPSDIISGVSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQ 728

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ MGTP  + +Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VAV+SYTG
Sbjct: 729 MGKQAMGTPGTSIQYRTDNKLYRLQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTG 788

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDM+DAMI+N+S+++RGF  G I+K+    L+        +    G   +  +    FG 
Sbjct: 789 YDMDDAMIINRSAHDRGFGWGTIYKTKVYSLD--------DKESRGRGKAKREIAKLFGF 840

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WK 850
                   ++  +W+                 L  DGL ++G ++ E   + ++    + 
Sbjct: 841 AP----GGLIKGEWR---------------QTLDEDGLPHIGVRVTEGSIVAAWHTVRFD 881

Query: 851 ESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
              N Y+         +Y   EE  ++ VR+    +E G        I YRI R P +GD
Sbjct: 882 AVSNSYINIDRQTHFLKYKDTEEGYIDSVRILG--SETGGDPCQAISIKYRIPRKPVIGD 939

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 940 KFSSRHGQKGVCSQLWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVR 1071


>gi|225681121|gb|EEH19405.1| DNA-directed RNA polymerase I polypeptide 2 [Paracoccidioides
           brasiliensis Pb03]
          Length = 1242

 Score =  543 bits (1400), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 341/1008 (33%), Positives = 524/1008 (51%), Gaps = 146/1008 (14%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     +  L     PHI SF+ + D    L+ A++DI    F          
Sbjct: 19  ERLFRHPPKDHTAYPSLAASIRPHIDSFNALFDNDKILEAALKDIGTKSFLDGDVETPEQ 78

Query: 97  -----EIYGKTLKLNIVKAAISEPKVPAG--PVGIHFN----KYYPTEARQTRSVYSGPF 145
                +   +  + N +   I+E  +     P    FN    + YP E R+  + Y G  
Sbjct: 79  KRARLDEGRRAPRRNKLSVRITELFLEKAMLPASNKFNTRNREIYPAECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML+S RC+L   +P QL++  E  +E GGYF+V G
Sbjct: 139 RARLEYRINNGEWKESVRELGQVPIMLRSNRCYLEKCSPEQLVQHKEESEELGGYFVVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI  RRN P+AI R+++  RG  ++  G+ IRSV+ D+++  N LH++++G+ 
Sbjct: 199 NEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPDQTSQTNFLHYLSDGNV 258

Query: 266 RFMFSHRKS-------MCLLGMMQSLHEE------------------------------- 287
            F F+ RK+       M L G++Q+   +                               
Sbjct: 259 TFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLVGHEGSEGIKNSFVTDRVELLLRTYK 318

Query: 288 --GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
             GIH + D + + G+ F+  L       +E    ++ L   +LPHL ++        DK
Sbjct: 319 GYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEF-LRKVVLPHLGNHNVTDSQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-------------- 384
           F  +  M  KL+ +V G    D+ D++  QE++ GG LY  LLK+               
Sbjct: 378 FNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYGMLLKERLEEWLRSFGPIAQD 437

Query: 385 ---KSGTSAVLK---ESDIYAAFRASSIES---AMTNFLATGNVSAGKNSTLQLMQASGF 435
              K+  +  +    E +  +   A + E+   A+  FL+TGN+ +   + L L Q SG+
Sbjct: 438 WSVKNQNARFIDPKFEKEFLSRIVARTNENIGGALEYFLSTGNLVS--PTGLDLQQPSGY 495

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH
Sbjct: 496 TVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 555

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L   C+I     +  ++ +P ++ +LG   +T       E++++V +DGRI+GY   + A
Sbjct: 556 LAHKCKIE--TSNLDVSGVPQIISNLG---VTSESSVSLEESVVVQMDGRILGYCSPKQA 610

Query: 556 TSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
             +   LR  K+ G K +P  LEI Y+  P    G YPG+YLF+   RM+RPV  L    
Sbjct: 611 RIISDTLRYWKVEGNKSLPVELEIGYV--PNSNRGQYPGIYLFSQCARMVRPVKYLPLDK 668

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           ++++G FEQ FM+I     +   G++TH E   T  LS +AN+ P  D NQSPRNMYQCQ
Sbjct: 669 LDYVGPFEQPFMEIACVPSDIISGVSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQ 728

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ MGTP  + +Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VAV+SYTG
Sbjct: 729 MGKQAMGTPGTSIQYRTDNKLYRLQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTG 788

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDM+DAMI+N+S+++RGF  G I+K+    L+        +    G   +  +    FG 
Sbjct: 789 YDMDDAMIINRSAHDRGFGWGTIYKTKVYSLD--------DKESRGRGKAKREIAKLFGF 840

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WK 850
                   ++  +W+                 L  DGL ++G ++ E   + ++    + 
Sbjct: 841 AP----GGLIKGEWR---------------QTLDEDGLPHIGVRVTEGSIVAAWHTVRFD 881

Query: 851 ESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
              N Y+         +Y   EE  ++ VR+    +E G        I YRI R P +GD
Sbjct: 882 AVSNSYINIDRQTHFLKYKDTEEGYIDSVRILG--SETGGDPCQAISIKYRIPRKPVIGD 939

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 940 KFSSRHGQKGVCSQLWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMF 987



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1026 KAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVR 1071


>gi|338713977|ref|XP_003362990.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
           caballus]
          Length = 924

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 308/762 (40%), Positives = 421/762 (55%), Gaps = 97/762 (12%)

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL------------------------ 278
           +  V+ + SA N  LH++ NG+    F +RK +  L                        
Sbjct: 1   MHCVREEHSAVNMNLHYLENGTVMLNFVYRKELFFLPLGFALKALVSFSDYQIFQELIKG 60

Query: 279 ------------GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTN 326
                        M++ + EEG  TQ     + G+ F+ KL     +  + +  +++   
Sbjct: 61  KEDDSFFRNSVSQMLRIVTEEGCSTQKQVLNYLGERFRVKLNLPDWY-PDAQAAEFLFNQ 119

Query: 327 CILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---- 382
           CI  HL    +KF  L  MT KLF + +G    ++ DS++ QE++T G L+L  LK    
Sbjct: 120 CICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKME 179

Query: 383 -----------KEKSGTSAVLKESDIYAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLM 430
                      K+   T   +   ++   F   + +       LATGN+ +   + L  +
Sbjct: 180 AWLVSIKIALDKKAQKTDVSINTDNLMKIFNLGTDLTKPFEYLLATGNLRS--KTGLGFL 237

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF+CPVHTPDG PC
Sbjct: 238 QDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPC 297

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYI 550
           GL+NHLT  C++         A +P++L SLG+ P+         +   V+LDG +VG++
Sbjct: 298 GLMNHLTAICEVVTQF--AYTASVPALLCSLGVTPVDGAPHRPYSECYPVLLDGVMVGWV 355

Query: 551 LDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
             ++A S+   LR  K++ EK IP  +E+  +    K   LYPGL+LFT P R++RPV N
Sbjct: 356 DKELAPSIADSLRHFKVLREKRIPPWMEVALIPMTGKP-SLYPGLFLFTTPCRLVRPVQN 414

Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
           L  G  E IGT EQ+FM+I I   E + G+TTH+EL     LS +AN IP  D NQSPRN
Sbjct: 415 LELGREELIGTMEQIFMNIAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRN 474

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
           MYQCQMGKQTMG P L +R +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAV
Sbjct: 475 MYQCQMGKQTMGFPLLTYRDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAV 534

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
           ISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E +  G D  +    
Sbjct: 535 ISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIKQGDDSLV---- 582

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW 849
                                   FG  P +  +  KL  DGL ++GA+L   DP YSY 
Sbjct: 583 ------------------------FGVKPGDPRIVQKLDDDGLPFIGAQLQYGDPYYSYL 618

Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
             +        Y  KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKFASR 
Sbjct: 619 NLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKF--KCICITMRVPRNPTIGDKFASRH 676

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 677 GQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 718



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 758 AGYNFYGTERLYSGISGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 817

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 818 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 871


>gi|426223603|ref|XP_004005964.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
           [Ovis aries]
          Length = 924

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 311/762 (40%), Positives = 419/762 (54%), Gaps = 97/762 (12%)

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL------------------------ 278
           +  V+ + SA N  LH++ NG+    F +RK +  L                        
Sbjct: 1   MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKG 60

Query: 279 ------------GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTN 326
                        M++ + EEG  TQ     + G+ F+ KL     + NE +  +++   
Sbjct: 61  KEDDSFFRNSVSQMLRIVMEEGCSTQKQVLNYLGERFRVKLNLPDWYPNE-QAAEFLFNQ 119

Query: 327 CILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---- 382
           CI  HL    +KF  L  MT KLF + +G    ++ DS+M QE++T G L+L  LK    
Sbjct: 120 CICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKEKLE 179

Query: 383 -----------KEKSGTSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLM 430
                      K+   T+  L   ++   F     +       LATGN+ +   + L  +
Sbjct: 180 AWLVSIKIAIDKKSQKTNVSLNSENLMKIFSLGIDLTKPFEYLLATGNLRS--KTGLGFL 237

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF+CPVHTPDG PC
Sbjct: 238 QDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPC 297

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYI 550
           GL+NHLT  C++     S   A IP++L SLG+ P+         +   V+LDG ++G+ 
Sbjct: 298 GLMNHLTAICEV--VTQSVYTASIPALLCSLGVTPVDGTPHRPYSECYPVLLDGVMIGWA 355

Query: 551 LDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
             +IA  +   LR  K++ EK IP  +E+V +    K   LYPGLYLFT P R++RPV N
Sbjct: 356 DKEIAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLYLFTTPCRLVRPVQN 414

Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
           L  G  E IGT EQ+FM++ I   E   G+TTH+EL     LS +AN IP  D NQSPRN
Sbjct: 415 LELGKEELIGTMEQIFMNVAIFEDEVLAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRN 474

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
           MYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAV
Sbjct: 475 MYQCQMGKQTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAV 534

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
           ISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E +  G D  +    
Sbjct: 535 ISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIKQGDDSLV---- 582

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW 849
                                   FG    +  +  KL  DGL ++GA+L   DP YSY 
Sbjct: 583 ------------------------FGVKAGDPRVMQKLDDDGLPFIGAQLKYGDPYYSYL 618

Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
             +        Y  KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKFASR 
Sbjct: 619 NLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKF--KCVCITMRVPRNPTIGDKFASRH 676

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKGI S  WP ED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 677 GQKGILSRLWPVEDMPFTESGMVPDILFNPHGFPSRMTIGML 718



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYNYYGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 758 AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 817

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 818 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 871


>gi|326517304|dbj|BAK00019.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1194

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 340/989 (34%), Positives = 515/989 (52%), Gaps = 129/989 (13%)

Query: 79  MLDEGLDLAVEDIAPIEFEIYGKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQT 137
           MLD GLD A+ D+ P+E  I   T +K+      I     P  P+G       P E R++
Sbjct: 1   MLDHGLDDALADLLPVELSINEDTHIKMQFTSLEIG---YPCRPLGADIVPVTPRECRES 57

Query: 138 RSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPAQLIERGEHPD 195
            + YSG F  ++  + +GK    +   V  G +PIM+ S +C+LRNL P +L E  E  +
Sbjct: 58  ATSYSGSFKGSIEVTIEGKVNAQYVIPVKLGDLPIMVMSSKCNLRNLAPKKLAEMEEESN 117

Query: 196 EWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNN 255
           E GGYFIV G E+++RLL   RRN+ +AI+R+ ++NRG  +SD GV ++  K+D ++   
Sbjct: 118 EVGGYFIVNGIERVIRLLQIQRRNYAVAIERSTFRNRGNNYSDKGVAMKCTKKDLTSATI 177

Query: 256 VLHFVTNGSARFMFSHRKSMCLLG------------------------------------ 279
            LH++ NG A   F  RK   LL                                     
Sbjct: 178 TLHYLNNGCATLRFVLRKQEFLLPVILVAKSLMNISDKELFDRIVGENLDNTFLTTRIEL 237

Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
           +++   +  +H+ ++   + G +F+  L    ++ +++E    ++   +  H++ +  K 
Sbjct: 238 LLRDYKQYNLHSMNECLAYLGSLFRNLLGVTSKY-SDLETGILLIKRNLFIHVESFGGKL 296

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--EKSGTSA---VLKE 394
            CL  M  KLF  VQG    D+ D++M  +++  G L   ++K+  E+S T++   V+++
Sbjct: 297 DCLIFMIRKLFSFVQGKCINDNADALMNHDLLLPGHLLNMIIKEKLEESLTASKGLVIRD 356

Query: 395 SDIY-AAFRASSIES----AMTNFLATGNVSAG-----------KNSTLQLMQASGFVIM 438
           S +    F A  +++            GN+ A             +S L LMQ SGF I+
Sbjct: 357 SRVMKGKFEAECLKNNKYFQRLCDRVCGNIGAKIATFLSSGNVVSSSGLDLMQKSGFTII 416

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           AE +N  R+ SHF++VHRG +F  M+++  R+L  ++WGF+CPVHTPDG PCGLLNHL  
Sbjct: 417 AERLNLFRFFSHFQSVHRGQFFTTMKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAK 476

Query: 499 NCQISEYIPSKV--------LAQ--------------IPSVLVSLGMLPLTPV----IQS 532
           +  I  Y PSK         +AQ              +  VLVSLGM  ++ +     Q+
Sbjct: 477 DAVILSYPPSKKPPITTTHPVAQPSAVNLDLLCSKSYLQEVLVSLGM-QISGLGNYDGQA 535

Query: 533 I--PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL 590
           I    ++L V++DG   G++  + A S+V +LR +K +  K  +  ++ Y+  P   +G 
Sbjct: 536 IFNERESLSVLIDGVFAGFVQKEKAPSVVAQLRRMKSLA-KYGRRADLPYILEPTTEIGF 594

Query: 591 -----------YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
                      YPG+Y+FT  GRM RPV+NL    +EWIG  EQVFM+I    ++ +P  
Sbjct: 595 IPKLEFDNLGPYPGIYIFTQHGRMSRPVLNLHTKEVEWIGPMEQVFMEIACVKEDIFPSP 654

Query: 640 -------------TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
                        T+H ELS T  LS +A+L P  D NQSPRNMYQCQMGKQTMGTP   
Sbjct: 655 FKTASSTSVEDEGTSHIELSPTVMLSQIASLTPYSDYNQSPRNMYQCQMGKQTMGTPTHA 714

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
           ++++   KLYR+    +P  +   +    MD +P G NA+VAVISYTGYDMEDAMI+NK+
Sbjct: 715 FKFRADNKLYRILNVQAPIVQTKTHGEYFMDEYPQGCNAVVAVISYTGYDMEDAMIINKA 774

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           +YERGF HGC++K+MF++LE         T       S  +      + + Q  +  ++ 
Sbjct: 775 AYERGFGHGCVYKTMFVDLEEEEVKAANLTSRPSFKFSNFKG---VAMTNNQTSKISLNS 831

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEE 866
             +    FG D   ++L+     DGL   G  ++  +P+      S   +    +   E 
Sbjct: 832 PVKHDAIFGGDLVCESLD----YDGLPAEGNLVHYGEPIVCLIDVSTGNHKIISHKDHEP 887

Query: 867 MCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
             ++ VR+    SS  T+          I  R +RNP +GDKF+SR GQKG  SV WP E
Sbjct: 888 AYIDAVRVIGLGSSTNTKVERSNFRRVAITLRYRRNPIIGDKFSSRHGQKGTLSVLWPQE 947

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 948 NMPFSESGMSPDVLINPHAFPSRMTIGML 976



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GY YYG+E +Y+G+ G +MQA IF G+V YQRLRHMVSDK Q +         +      
Sbjct: 1017 GYQYYGSEPLYNGLTGKVMQADIFIGLVFYQRLRHMVSDKSQVRSTGPVTAITRQPVKGR 1076

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTEG---- 881
               G + +G    ERD + S+      ++R + C  S    +C +   + S F +     
Sbjct: 1077 KKHGGIRLGEM--ERDALLSHGVAFCLQDRLMNCSDSHVAFVCSQCGNLLSIFAQSIKNS 1134

Query: 882  -GSVTPNCAYIGYRIQRNPT 900
             G  T      G+R Q   T
Sbjct: 1135 IGQSTMRFENTGFRTQMQQT 1154


>gi|224008096|ref|XP_002293007.1| DNA directed RNA polymerase i, second largest subunit
           [Thalassiosira pseudonana CCMP1335]
 gi|220971133|gb|EED89468.1| DNA directed RNA polymerase i, second largest subunit
           [Thalassiosira pseudonana CCMP1335]
          Length = 1069

 Score =  537 bits (1383), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 328/882 (37%), Positives = 463/882 (52%), Gaps = 130/882 (14%)

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
            ++  G +PIM  SK CHL   +PA+L++  E   E+GGYFIV G E+ VRLL   R NH
Sbjct: 3   ISRNFGMMPIMTMSKACHLYGKSPAELVKVKEEQTEFGGYFIVNGIERCVRLLQVPRANH 62

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKR--DESATNNVLHFVTNGSARFMFSHRKSMCLL 278
             +I+R+ +KNRG L++DLGV IR  +   D S   N LH++T G A   F  RK   LL
Sbjct: 63  ATSIQRSNYKNRGKLYTDLGVAIRCQRHNGDMSTITNTLHYLTTGGATLKFVARKQEFLL 122

Query: 279 GM---MQSLH-------------EE------------------------------GIHTQ 292
            +   M++L              EE                              G+ T 
Sbjct: 123 PLVLVMRALSGGDGSTRGHGITDEELYNRIVQGDESNTFVRARAELLLREAKQFNGMQTP 182

Query: 293 HDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHV 352
            +   F G  F+  +       ++VEI  Y++   IL HL  Y DK      M  KL+  
Sbjct: 183 EECLAFVGSRFR-LMSMKANSTSDVEIGHYIINRYILIHLPSYGDKLEYTLFMLRKLYSF 241

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSA-----VLKE------------- 394
             G   +D+ DS+  QEI+  G L    +K++   T A     +LKE             
Sbjct: 242 AAGDCGVDNADSLQNQEILLPGHLMCTFVKEKFDETLANIRLGLLKEMRMDYTKLLTSVP 301

Query: 395 --------SDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
                    D Y    +  I   + +FL+TGN+ +  ++ L LMQ SG+ I+AE +N +R
Sbjct: 302 QVKFWTKCVDRYGMLSSGGIGKKVQHFLSTGNIIS--STGLDLMQVSGYTIVAEKLNFLR 359

Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
           + +HFR+VHRG +F EM+++  R+L  D WGF+CPVHTPDG PCGLL+H+   CQ   Y 
Sbjct: 360 FCAHFRSVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKCQCMAY- 418

Query: 507 PSKV----LAQIPSVLVSLGMLPLTPVIQSIPEQA------LMVMLDGRIVGYILDQIAT 556
           P+      +  +  +L+S G+ P     +    +       L VM++GR+VG    ++  
Sbjct: 419 PADAKDGEMQDLDELLISWGVTPAGTGGEGGDGRTISNFTNLPVMVNGRVVGGASVKLCK 478

Query: 557 SLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
           S+  +LR LK V EK  +P +LE+ Y+    KG G YPGL+LFT   R++RPV+  A G 
Sbjct: 479 SIAFQLRSLK-VQEKPTVPPTLEVAYIPPGMKG-GPYPGLFLFTIAARVVRPVLQRATGR 536

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
            E+IG  EQ FMDI    ++   GITTH+EL   + LS +A+L P  D NQSPRNMYQCQ
Sbjct: 537 TEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRNMYQCQ 596

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQTMGTPC +  Y+   K+Y++QTP +P  +   +    MD +P GTNA+VAV+SYTG
Sbjct: 597 MGKQTMGTPCHSLPYRADNKMYKIQTPQAPLVQTAVHGEYKMDEYPNGTNAVVAVLSYTG 656

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           +DMEDAMILNKSSYERGF H  ++K++ I L                             
Sbjct: 657 FDMEDAMILNKSSYERGFGHASVYKTIKIRL----------------------------- 687

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN 854
            +  +   +  +       F  DP    L++    DGL  VG  + E D +Y    +  N
Sbjct: 688 CNKTKRVKIPPENEGDLPTFRHDPVYPHLDE----DGLPRVGQWVEEGDALYCLADDDGN 743

Query: 855 RYVTCRYSGKEEMCVEVVRM-----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
           +    ++  KE+ CV+ +R      +S  + G   T +   I  R  RNP +GDKF+SR 
Sbjct: 744 KGYPGKHKEKEKACVQTIRRLNTGGTSSASRGSKGTDDALSITLRFPRNPVIGDKFSSRH 803

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG+ S+ WP  D+PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 804 GQKGVLSILWPQTDMPFSESGISPDVIINPHAFPSRMTIGML 845



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 2/82 (2%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYNYYG+E +YSGV G +M A ++ GVV YQRLRHMVSDK+Q +     +P  +     
Sbjct: 887 AGYNYYGSEPLYSGVSGCLMHADLYIGVVFYQRLRHMVSDKYQVRATGTVNPLTRQPIKG 946

Query: 827 LGPDGLVYVGAKLNERDPMYSY 848
               G + +G    ERD + S+
Sbjct: 947 RKKGGGIRLGEM--ERDSLLSH 966


>gi|449269621|gb|EMC80379.1| DNA-directed RNA polymerase I subunit RPA2, partial [Columba livia]
          Length = 1022

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 322/861 (37%), Positives = 460/861 (53%), Gaps = 104/861 (12%)

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           V+W  +    GT  + +G +PIM+KSK C+L NL+P +LI+  E  +E GGYFI+ G EK
Sbjct: 2   VSWLVNDVPQGTIKQPLGYIPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEK 61

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           +VR+LI  RRN P+A++R+ WKNRG  F++ GV +  +K + +A N  LH++ NG     
Sbjct: 62  VVRMLIMPRRNIPLAMERHKWKNRGPGFTEYGVVMHCIKDEHTAINMNLHYLENGCVMVN 121

Query: 269 FSHRKSM------------------------------------CLLGMMQSLHEEGIHTQ 292
           F  +K +                                    C+  MM+++ + G  TQ
Sbjct: 122 FIFQKELFFLPLGFALKALVNFPDYQIVEELVKGKEGDTFYMNCVTEMMRAVVDAGCLTQ 181

Query: 293 HDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHV 352
            +   + G+ F+ KL     + +E +  D++L  CI  HL +  +KF  L  MT KL+  
Sbjct: 182 ENVLEYLGKSFRIKLNLPEWYSDE-QAADFILNKCICIHLTNRTEKFYLLCMMTRKLYAF 240

Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSA--VLKESDI 397
            +G    D+ DS+M QE++T G L+L  LK+             EK    A   +    +
Sbjct: 241 AKGECMEDNPDSLMNQEVLTPGQLFLMFLKERLESWLQSVKFVLEKRAEKADVSINADGL 300

Query: 398 YAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
             AF  A+ +       LATGN+ +   + L ++Q SG  ++ + +N +RY+SHFR +HR
Sbjct: 301 VKAFSLATDLTKPFEYLLATGNLRS--KTGLGMLQDSGLCVVGDKLNFIRYLSHFRCIHR 358

Query: 457 GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIP 515
           G+ F +MR++  R+L  ++WGF+CPV TPDG PCGL+NH+T  C+I +E +P   +  IP
Sbjct: 359 GAAFSQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTEMVP---MTDIP 415

Query: 516 SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPK 574
            +L SLG+ P+         +   V+LDG +VG++   +A  +   LR  KI  EK  P 
Sbjct: 416 PLLCSLGVTPINVTPSKPYAECYRVLLDGSVVGWVEWDLAPEIAETLRRFKITQEKRFPA 475

Query: 575 SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKE 634
             E+V +    K   LYPGL++FT P RM+RPV NL  G  EWIGT EQV +++   +++
Sbjct: 476 RAEVVLIPMTGKP-SLYPGLFIFTTPCRMVRPVRNLFYGRKEWIGTLEQVGINLVRLLRQ 534

Query: 635 AYPGITTHRELSKTDFLSNLANLIPMP----DCNQSPRNMYQCQMGKQTMGTPCLNWRYQ 690
               + +H  LS  D        IP      +  +       C   KQTMG P  N++ +
Sbjct: 535 VL-CVLSHVPLSSPDCSWAAKKWIPRKLDHLEKFKWETGRRTCYCRKQTMGFPVYNYKDR 593

Query: 691 GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYER 750
              KLY L TP SP  RP  YD   MD++P+GTN+IVAVISY+GYDMEDAMI+NKSS++R
Sbjct: 594 SDNKLYHLHTPQSPLVRPSMYDYYGMDSYPVGTNSIVAVISYSGYDMEDAMIVNKSSWQR 653

Query: 751 GFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQT 810
           GFA+G + K   I+L    +  G   +                                 
Sbjct: 654 GFAYGSVIKMESIDLSLKASRAGDNLV--------------------------------- 680

Query: 811 KDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVE 870
              FG  P +  +  KL  DGL +VG+ L   DP YS+   +     T  Y  KE   V+
Sbjct: 681 ---FGIRPGDLNITAKLDADGLPFVGSMLQPGDPFYSFMNLNTGETFTVYYPNKEVGIVD 737

Query: 871 VVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSG 930
            +R+ S     G     C  I  R+ RNPTVGDKFASR GQKGI S  WP ED+PFT++G
Sbjct: 738 NIRLCSNDRGTGKFKKAC--ITVRVPRNPTVGDKFASRHGQKGILSQLWPVEDMPFTENG 795

Query: 931 LVPDIVFNPHGFPSRMTIGFL 951
           +VPDI+FNPHGFPSRMTIG L
Sbjct: 796 MVPDILFNPHGFPSRMTIGML 816



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 4/118 (3%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           + +GYN++GTE MYSG+ G  ++A+IF GVV+YQRLRHMVSDK+Q +    RD       
Sbjct: 854 VSAGYNFFGTEKMYSGISGLELEAEIFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPV 913

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
                +G +  G    ERD + ++      ++R   C       +C+    M+S   E
Sbjct: 914 KGRNVEGGIRFGEM--ERDALLAHGTSFLLQDRLFNCSDGSIAYVCMSCGSMTSPVLE 969


>gi|440473458|gb|ELQ42252.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae Y34]
 gi|440488870|gb|ELQ68559.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae
           P131]
          Length = 1192

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 338/991 (34%), Positives = 511/991 (51%), Gaps = 179/991 (18%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFML-DEG----LDLAVEDIAPIEFEIYGKTLKLN 106
           F  PP   + +  L T   PHI SF+ +  D+G    +D A+ DI    F          
Sbjct: 23  FRNPPTDHSAYPALQTAVNPHIESFNALFRDDGKPGLIDHAIRDIGTKYF---------- 72

Query: 107 IVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVG 166
                            +  +   P+  R   S+ +G     V             +++G
Sbjct: 73  -----------------LDGDASMPSSERNRLSINNGELKECV-------------RDIG 102

Query: 167 RVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
           ++PIM+KS RCHL   +PA L++R E  +E GGYFIV G+EK++RLL+ NRRN P+AI R
Sbjct: 103 QMPIMVKSNRCHLEGNSPALLVQRKEESEELGGYFIVNGNEKIIRLLLLNRRNFPLAINR 162

Query: 227 NAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-------MCLLG 279
            +++NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+       M L  
Sbjct: 163 PSFQNRGPAYTPYGIILRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKA 222

Query: 280 MMQSLHEE---------------------------------GIHTQHDSKVFFGQIFKEK 306
           ++++   E                                 G++++  ++ + G+ F+  
Sbjct: 223 LVETNDSEIFEGLCGPPGSKGVGNSFLTDRVELLLRTYKSYGLYSKTKTRAYLGEKFRVV 282

Query: 307 L--QYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFHVVQGMV 357
           L  Q  + H    ++    L   +L HL  +        DKF  +  M  KL+ +V G  
Sbjct: 283 LGVQDSMSHY---DVGTEFLKKIVLVHLGSHDVTEQEDADKFRMILVMMRKLYALVAGEC 339

Query: 358 QLDSEDSIMLQEIMTGGSLYLQLLKKE----------------------KSGTSAVLKES 395
            +D+ D++  QEI+ GG LY  +LK+                        + TSA  ++ 
Sbjct: 340 AVDNPDAVQNQEILLGGYLYGMILKERLEEFVAVSLRAALRDYLRRSPANTFTSAAFEKD 399

Query: 396 DIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRA 453
                FR ++  + +++  FL+TGN+ +   S L L Q SGFV++AE +N +R++SHFR 
Sbjct: 400 FPANIFRRTNENLGNSLEYFLSTGNLQS--PSGLDLQQTSGFVVVAEKLNFLRFISHFRM 457

Query: 454 VHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
           VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I     +  ++ 
Sbjct: 458 VHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKI--MTDAVDVSA 515

Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-I 572
           IP +   LG++  +    +  E+++ VMLDG+I+G+   + + ++   LR  K+ G   +
Sbjct: 516 IPRLATELGVVDTS---SADTEESVPVMLDGKILGWCSPKQSRTIADTLRYWKVEGSHGV 572

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITM 632
           P  +EI  +  P    G YPG+Y+ + P RM+RPV  L     +++GT EQ +M I  T 
Sbjct: 573 PVHMEIGLV--PPSNGGSYPGIYMASQPSRMVRPVKYLPLEKEDYVGTHEQPYMSIACTE 630

Query: 633 KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
            E   G +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP      +  
Sbjct: 631 PEIVSGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAISRRTD 690

Query: 693 GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
            K+YR+QT  +P  R   ++    DNFP G NA+VAVISYTGYDM+DAMI+NKS++ERGF
Sbjct: 691 NKMYRIQTGQTPIVRAPLHNEYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGF 750

Query: 753 AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
            HG I+K+  I L+       T+ +              FG                   
Sbjct: 751 GHGTIYKTKKITLKDDSRTRSTKHITK-----------MFG------------------- 780

Query: 813 YFGRDPANKALE-DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC-----------R 860
            F  +   KA + +KL  DGL  +G+K+ + D + + W      Y              +
Sbjct: 781 -FAPNTTVKARDLEKLDLDGLPRIGSKVEQGD-IIAAWHTVSADYSDQLVNRDGLTHYEK 838

Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
           Y   E   VE +R+     E G+       I +RI R+P +GDKF+SR GQKG+ S KWP
Sbjct: 839 YKDSETAFVEEIRLVG--NENGTEPLQTVSIKFRIPRSPVIGDKFSSRHGQKGVASQKWP 896

Query: 921 AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 897 MIDMPFSESGMQPDVIINPHAFPSRMTIGMF 927



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 965  MKAGYNYHGNEPMYSGITGQELAADIYIGVVYYQRLRHMVNDKFQVR 1011


>gi|405121128|gb|AFR95897.1| DNA-directed RNA polymerase I polypeptide 2 [Cryptococcus
           neoformans var. grubii H99]
          Length = 1176

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 347/983 (35%), Positives = 506/983 (51%), Gaps = 170/983 (17%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFML-DEG-------LDLAVEDIA-PIEFEI- 98
           ++ F  PP   ++   L  L APHI SF+ ++ DEG       L + VEDI   + F+  
Sbjct: 56  ERQFRHPPLNASDVPALDELVAPHIKSFNALIEDEGNPGAKGLLQMGVEDIGEKVVFDGK 115

Query: 99  -----YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEA----RQTRSVYSGPFNVTV 149
                 G  L   I + A+S+P VP         + +PTEA    R++R       NV  
Sbjct: 116 GSEGGLGTKLSYRIDRVALSKPLVPEKDKLAVERRVFPTEAERSLRKSR-------NVVC 168

Query: 150 AWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
              W  +   +F                                    GGYFIV G+EK+
Sbjct: 169 CLLWFDEESTSF------------------------------------GGYFIVNGNEKI 192

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
           +R L+  RR++PI + R ++  RG  ++  G  IR V+ DE+A  N +H+++NG A   F
Sbjct: 193 IRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPDETACTNTIHYLSNGGATLRF 252

Query: 270 SHRKSMCLL-------------------GMMQSLHEE-----------------GIHTQH 293
           + RK   ++                   G++Q  ++                  G+HT  
Sbjct: 253 AWRKVEYMIPLMLILKALVDASDKEIFEGLIQGEYDNTFLTDRVELLLRGQKSWGLHTGA 312

Query: 294 DSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVV 353
               + G+ F+  L       + V++  ++L   +L HL    DKF  L  M  KL+  V
Sbjct: 313 QCLDYLGEKFRVVLNVP-DDWSNVQVGGHLLRKVVLVHLPAPRDKFRMLLFMLRKLYSQV 371

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSAVLKESDI 397
            G    D+ DS    E++  G LY  ++K+                 + G +    +   
Sbjct: 372 SGATCPDNPDSPQHHEVLLPGFLYGMIIKERFDDCLNAVKSQIQLDLRDGKARSFMDPKY 431

Query: 398 YAAFRASS---IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV 454
           + +  + +   I S ++ FLATGN+ +   + L L Q SGF I+AE +N  RY+SHFR +
Sbjct: 432 FTSVLSKTNWDIGSKLSYFLATGNLVS--PTGLDLQQTSGFTIVAEKLNFYRYLSHFRCI 489

Query: 455 HRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
           HRG++F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  CQI     S  ++ I
Sbjct: 490 HRGAFFAELKTTTVRKLMPESWGFLCPVHTPDGSPCGLLNHLSHTCQI--VTSSLDVSHI 547

Query: 515 PSVLVSLGMLPLTPVIQSIPEQALMV--MLDGRIVGYILDQIATSLVPKLRMLKI-VGEK 571
           P++L + GM   T V  S  +   MV   LDG+++GY     A  L  +LR LK  V  K
Sbjct: 548 PALLSAQGM---TQVFASSIDGRRMVCIQLDGKVIGYASPMKAKQLANRLRKLKTEVDSK 604

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
           +P  LEI Y+  P    G YPGLYLF+   RM+RPV  L  G ++ +G+FEQV+MD+ IT
Sbjct: 605 VPLDLEIGYV--PVTKGGQYPGLYLFSSRSRMMRPVTYLENGKLDHLGSFEQVYMDVAIT 662

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            +E   G+++H EL  T  LS +ANL P  D NQSPRNMYQCQMGKQ+MGTP      + 
Sbjct: 663 KEEIEKGVSSHVELDPTSMLSVIANLTPFSDFNQSPRNMYQCQMGKQSMGTPSTAISKRT 722

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             K+YRLQ+  +P  RP  ++    DNFP GTNAIVAVISYTGYDMEDAMILNKS++ERG
Sbjct: 723 DNKMYRLQSGQTPVVRPDLHNHYGFDNFPNGTNAIVAVISYTGYDMEDAMILNKSAHERG 782

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ--IFFGVVHYQRLRHMVSDKWQ 809
           F +G ++K+   +L+             GV G+   A+  + FG+               
Sbjct: 783 FGYGTVYKADIFDLK-------------GVPGASRSAKPTLHFGL--------------- 814

Query: 810 TKDYFGRD-PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC 868
                GRD   +    + +  DGL  +G K+   DP+ +Y  ++  R    +Y G E   
Sbjct: 815 -----GRDVKEDHDARNIISQDGLPIIGTKVKTGDPLCAYIDDTTGRTKFHKYKGDETAF 869

Query: 869 VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
           ++ VR+    ++ G       +I  RI R+P +GDKF+SR GQKG+CS K+PA D+PF++
Sbjct: 870 IDEVRVLG--SDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKFPAIDMPFSE 927

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           SG+ PD++ NPH FPSRMTIG  
Sbjct: 928 SGMQPDVIINPHAFPSRMTIGMF 950



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +GYNYYG E MYSG+ G    A I+ G+V+YQRLRHMV+DK+Q +     DP  +
Sbjct: 990  AGYNYYGNEPMYSGITGEEFHADIYLGLVYYQRLRHMVNDKFQVRTTGPVDPLTR 1044


>gi|340515986|gb|EGR46237.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1206

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 340/979 (34%), Positives = 517/979 (52%), Gaps = 141/979 (14%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFD--FMLDEGLDLAVEDIAPIEFEIY---------- 99
           F  PP   + +  L L   PHI SF+  F  D    L    +A I  +++          
Sbjct: 23  FRNPPKDHSAYPALQLAVNPHIESFNAIFRGDGKPGLLAHGLADIGTKVFLDGNDRAAPE 82

Query: 100 -GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               L + I +  + +P+VP           YP E R+  + Y G  + T  +S +G   
Sbjct: 83  SRNKLYIRIKEVTLQKPQVPPSNKLAVNRDIYPAECRERHATYRGKLSATFEYSINGGDA 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             FT+E+G+VPIM+KS RCHL   +PA L+ R E  +E GGYFIV G+EK++RLL  N+R
Sbjct: 143 IEFTRELGQVPIMIKSNRCHLEGNSPALLVSRKEESEELGGYFIVNGNEKIIRLLQVNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R ++ NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+  L+
Sbjct: 203 NFPMAINRPSFTNRGAGYTTYGIILRSVRPDETSQTNVLHYLKDGNVTFRFSWRKNEYLI 262

Query: 279 GMMQSLHE----------EGI------------------------------HTQHDSKVF 298
            ++  L            EG+                              +++ +++ +
Sbjct: 263 PVIMILKALVETNDREIFEGLIGPMGSKAASNTFLTDRVELLLRTYKAYRLYSKSETRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            GQ F+  L      +++ E+    L   +  HL +         DKF  +  M  KL+ 
Sbjct: 323 LGQKFRVVLGVP-ETMSDYEVGTEFLRRIVCVHLGNVNVTEKQDLDKFHLVLFMIRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK---EKSGTS--AVLKE-----------S 395
           +  G   +D+ D+I  QEI+ GG LY Q+LK+   E  GTS  A L++           S
Sbjct: 382 LAAGECAVDNPDAIQNQEILLGGFLYAQILKERLDEFLGTSVRAALRDYLRRHPAVNFTS 441

Query: 396 DIY------AAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
           + +        FR S+  I + +  FL+TGN+ +   S L L Q +GF ++AE +N +R+
Sbjct: 442 EEFRKEFPGGIFRKSNENIANGLEYFLSTGNLVSA--SGLDLQQTAGFTVVAEKLNFLRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYI 506
           +SHFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH    C++ ++Y+
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHFAHKCKVMTDYV 559

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++ IP+++  LG +  +    +  +++++VMLDG+I+G+   + +  +   LR  K
Sbjct: 560 D---VSSIPALVAELGAVETS---SASTDESVVVMLDGKILGWCTPKESLRIGDCLRYWK 613

Query: 567 IVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LE+ Y+  P    G YPGLYL + P RM+RPV  L     +++G  EQ +
Sbjct: 614 VEGSHNVPLELEVGYV--PPSHGGSYPGLYLTSTPSRMVRPVKYLPLQKEDYVGPHEQPY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G++TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP  
Sbjct: 672 MSIAVVPQEIESGVSTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             R++   K YR+QT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 AIRHRTDNKSYRIQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGF HG ++K+  I L+        +++              FG   +      VS
Sbjct: 792 SAHERGFGHGTVYKTKKITLKDDSRTRAAKSVVK-----------MFGFAPHS----FVS 836

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC------ 859
              Q             L+D    DGL +VG  + E D + +Y   + +           
Sbjct: 837 ASHQA-----------MLDD----DGLPHVGRMVQEGDVLCAYHTVTPDYNGNLVNLDGI 881

Query: 860 ----RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGIC 915
               +Y   E   +E VR+     E GS       I  RI R+P +GDKF+SR GQKG+ 
Sbjct: 882 THYEKYKDSEIGFIEEVRLIGA--ESGSEPLQTISIKIRIPRSPVIGDKFSSRHGQKGVL 939

Query: 916 SVKWPAEDLPFTDSGLVPD 934
           S KWPA D+PF+++G+ PD
Sbjct: 940 SQKWPAVDMPFSETGIQPD 958



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++G+NY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 989  MKAGFNYHGNEPMYSGITGEELGADIYIGVVYYQRLRHMVNDKYQVR 1035


>gi|346319101|gb|EGX88703.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Cordyceps
           militaris CM01]
          Length = 1214

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 344/1001 (34%), Positives = 517/1001 (51%), Gaps = 167/1001 (16%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFDFML-DEG----LDLAVEDIAPIEF----EIYG-- 100
           F  PP     +  L L   PHI SF+ +  D+G    LD A+ DI    +    E  G  
Sbjct: 23  FRNPPKDHTAYPALQLAVNPHIESFNVLFRDDGKPSLLDHAMADIGTKTYLDGDERTGPE 82

Query: 101 --KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               L + I K  +S  +VP         + +P E R+    Y G  + T  ++ +G   
Sbjct: 83  GKNKLNVRITKVMLSRSQVPPSNKMAKNREVFPAECRERHVTYRGRLSATFEYNINGGDS 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             F +++G++PIMLK K                E  +E GGYF+V G EK++R+L  N+R
Sbjct: 143 HEFVRDLGQIPIMLKRK----------------EEAEELGGYFVVNGIEKIIRMLQLNKR 186

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL- 277
           N P+AI R +++NRG  +S  G+ +RSV+ DE++  NVLH++T+G+  F FS RK+  L 
Sbjct: 187 NFPMAINRPSFQNRGPGYSPFGIILRSVRPDETSQTNVLHYLTDGNVTFRFSWRKNEYLV 246

Query: 278 ---------------------LGMMQSLHEE------------------GIHTQHDSKVF 298
                                +G M S   E                  G++++  ++ +
Sbjct: 247 PVVMIMKALVETNDREIFEGVIGPMGSKATENTFLTDRVELLLRTYKSYGLYSKSQTRAY 306

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            GQ F+  L      +++ ++    L    L HL +         +KF  L  M  KL+ 
Sbjct: 307 LGQKFRVVLGVP-ETMSDYDVGTEFLRRITLVHLGNVNVKDKQDIEKFKMLLFMIRKLYA 365

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----------------KSGTSAVLKE 394
           +V G   +D+ D+I  QEI+ GG LY Q+LK++                 +   S     
Sbjct: 366 LVAGECAVDNPDAIQNQEILLGGFLYGQILKEKFDEFLGVNVRLSLREYFRRHPSVAFTS 425

Query: 395 SDIYAAFRASSIESAMTN-------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
            +    F A+    A  N       FL+TGN+ +   S L L Q +GF ++AE +N +R+
Sbjct: 426 EEFRKEFPAAIFRKANENLGNSLEYFLSTGNLVS--PSGLDLQQVAGFTVVAEKLNFLRF 483

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYI 506
           ++HFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I +++I
Sbjct: 484 IAHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGAPCGLLNHLAHKCKIMTDHI 543

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++++P+++V+LG +  +    +   +++++MLDG+I+G+   + +  +   LR  K
Sbjct: 544 D---VSKVPALVVTLGAVDTSTASTA---ESVVIMLDGQILGWCKPKESLRIADCLRYWK 597

Query: 567 IVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LEI Y+  P    G YPG+Y+ + P RM+RPV  L     + +G +EQ +
Sbjct: 598 VEGNHGVPLHLEIGYV--PPSTGGSYPGIYMTSTPSRMIRPVKYLPLQKEDMVGPYEQPY 655

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G++TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP  
Sbjct: 656 MSIAVVPEEIESGLSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 715

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              ++   K YRLQT  +P  R   ++    DNFP GTN +VAVISYTGYDM+DAMI+NK
Sbjct: 716 ALVHRTDNKSYRLQTGQTPIVRAPLHNAYGFDNFPNGTNVVVAVISYTGYDMDDAMIINK 775

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETM--------YSGVDGSMMQAQIFFGVVHY 797
           S++ERGF HG ++K+  I L+       ++++        +S V  S        G+ H 
Sbjct: 776 SAHERGFGHGTVYKTKKISLKDDSRTKASKSVIKAFGFAPHSFVSASYQGMLDDDGLPHV 835

Query: 798 QRLRHMVSD-----KWQ--TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK 850
            RL   V D      W   T DY G         D +  DG+ +           Y  +K
Sbjct: 836 GRL---VQDGDVICAWHTVTPDYRG---------DLVNLDGITH-----------YEKYK 872

Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
           + E  +            +E VR+     E GS       I +RI R P +GDKF+SR G
Sbjct: 873 DGETGF------------IEEVRLIGA--ETGSEPLQTISIKFRIPRAPIIGDKFSSRHG 918

Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           QKG+CS KWPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 919 QKGVCSQKWPAIDMPFSESGMQPDVIINPHAFPSRMTIGMF 959



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 997  MKAGYNYHGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKFQVR 1043


>gi|256077165|ref|XP_002574878.1| DNA-directed RNA polymerase I subunit [Schistosoma mansoni]
 gi|353230762|emb|CCD77179.1| putative dna-directed RNA polymerase I subunit [Schistosoma
           mansoni]
          Length = 1155

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 340/967 (35%), Positives = 512/967 (52%), Gaps = 130/967 (13%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           L   H  SFDF + EGL   V+ + P+EF      ++  I    ++ P        +   
Sbjct: 4   LSRVHTGSFDFFVKEGLSRLVKHLQPLEFNSGSDVVEFKIQFIEVAPPVDSDNRSTL--- 60

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
             YP+E R++   Y G   ++V  S +G   G      G +PIM+ S+ C+L +L  +Q 
Sbjct: 61  -LYPSECRRSGLTYGGELKLSVRVSVNGSPLGVLDVPCGVLPIMVMSRACNLSSLPRSQF 119

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
              GE   E GGYFIV G E+++RLLI +RRN+P+AI R+ +K RG  +++  + +R V+
Sbjct: 120 YLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRSTFKKRGHGYTEHAIVMRCVR 179

Query: 248 RDESATNNVLHFVTNGSARFMFSHRKSMCL------------------------------ 277
            DE+ +  +LH++ NG     F   +   L                              
Sbjct: 180 EDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRVSFKSLYKTFGNVRTCNISFLF 239

Query: 278 --------LGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCIL 329
                   + ++  L ++   +Q  +  + G +F++++    R L++ E   ++L+  I 
Sbjct: 240 LKFHIRNAMRILIRLKDDEYSSQTRALCYLGGLFRKRMNVPDR-LSDEEAGKFLLSEYIA 298

Query: 330 PHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTS 389
            HL  + DK+  L  M  KL   V G+   +S D+ M QE++   +LYLQ+L+ +     
Sbjct: 299 IHLSSFLDKYHLLCFMIKKLHAFVSGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLL 358

Query: 390 AVLKESDIYAA-----------------FRASSIESAMTNFLATGNVSAGKNSTLQLM-- 430
           A +KE  +  +                  RAS + +AM   ++TGN+     STL     
Sbjct: 359 ANVKEQVLLKSRKQNVRISLSLFHQALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLS 418

Query: 431 -QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
            Q++G  + A+N+N +R+ + FRAVHRG++F EMR++  R+L  +AWGF CPVHTPDG P
Sbjct: 419 GQSTGLSVPADNVNFLRFAAQFRAVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAP 478

Query: 490 CGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGMLP--LTPVIQSIPEQ--ALMVMLDG 544
           CGLLNHL    + + E     VL  I + L +  + P  L+  +  + EQ  AL V+LDG
Sbjct: 479 CGLLNHLAEPVEAVCETPKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDG 538

Query: 545 RIVGYI--LDQIATSLVPKLRMLKI--VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           R++G++  LD+ A  L  +LR  K+    + IP ++EI  +   + G   YPGLYLF G 
Sbjct: 539 RLIGWLSTLDE-AKRLALELRNSKVDPNCKNIPHTMEITLVPSTDVG-SQYPGLYLFAGG 596

Query: 601 GRMLRPVMNL-----AAGN--IEWIGTFEQVFMDICIT---MKEAYPGITTHRELSKTDF 650
            R+LRPV NL     +AG   IEWIGTFEQV+++I +    + E  P   +H E++  + 
Sbjct: 597 SRLLRPVKNLQCPKNSAGKDVIEWIGTFEQVYLNISVKEEELSERSPIDRSHIEIAPENI 656

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            S +A LIP PD NQSPRNMYQCQM KQTMG  C  WR +   K YRL TP SP  R   
Sbjct: 657 FSFVAGLIPYPDFNQSPRNMYQCQMAKQTMGHSCYTWRNRSDAKAYRLFTPQSPLVRTKM 716

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
           Y   D+D++P+G NAIVAV+SYTGYDMEDAM++NK+SY+RG A  CI+KS  I+L S   
Sbjct: 717 YVKYDVDHYPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSK 776

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
              +                      +Q+ R + S+      YFG  P     +  L  D
Sbjct: 777 STSSNN-------------------PFQKKRLVTSEY-----YFGEKP-----DKGLDLD 807

Query: 831 GLVYVGAKLNERDP----MYSYWKESENRYVTCRYSGKEEMC-VEVVRMSSGFTEGGSVT 885
           G   VGA+L   +P    +Y+Y      +    +Y G E++  V+ + ++  ++      
Sbjct: 808 GFPPVGARL---EPGVSWLYAYTHSETLQTNFIKYEGGEQIAYVDSISLNGSWS------ 858

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPS 944
             CA I  R+ R P +GDK++SR GQKGI S+    E++P+ T +GL+PD++FNPHGFP+
Sbjct: 859 --CATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPT 916

Query: 945 RMTIGFL 951
           RMT+G +
Sbjct: 917 RMTMGMM 923



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
            I  + G+N++GTETM SG  G  ++AQI+ GVV+YQRLRHMV+DK+Q +     DP
Sbjct: 959  ILTDCGFNHWGTETMMSGSTGRQLEAQIYVGVVYYQRLRHMVADKYQVRAEGRFDP 1014


>gi|407924585|gb|EKG17618.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
           phaseolina MS6]
          Length = 823

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 316/859 (36%), Positives = 463/859 (53%), Gaps = 124/859 (14%)

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
           +S +CHL  +TPA+L+   E  +E GGYF+V G EKL+R+LI  +RN P+AI R +++NR
Sbjct: 6   QSNKCHLEGMTPAELVNAKEETEELGGYFVVNGIEKLIRMLIVGKRNFPMAIIRPSFQNR 65

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-------MCLLGMMQSLH 285
           G  ++  G+ IRSV+ D+++  NVLH++++G+  F FS RK+       M L  ++++  
Sbjct: 66  GQSYTKFGIQIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETND 125

Query: 286 EE----------------------------------GIHTQHDSKVFFGQIFKEKLQYDL 311
            E                                  GIH++  ++ + G  FK  L    
Sbjct: 126 REIFEGLVGAAGSKGLADKQFVTDRVELLLRTYKVYGIHSKAKTRAYLGSKFKVVLGVPD 185

Query: 312 RHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
              +E    ++ L   +LPHL           DKF  L  M  KL+ +V+G   +D+ D+
Sbjct: 186 DMPDEDAGAEF-LRRIVLPHLGSSDVTESQDIDKFKMLLFMIKKLYSLVEGECTVDNPDA 244

Query: 365 IMLQEIMTGGSLYLQLLKKEKSGTSAVLK-------------------ESDIYAAFRASS 405
           +  QEI+ GG LY  +LK++       ++                   E D        +
Sbjct: 245 VQNQEILLGGFLYGMILKEKIEDWLMSIRALASEWCRNTQHRFTDPEFEKDFLGRIVRRT 304

Query: 406 IES---AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
            E+   AM  FL+TGN+ +  +S L L Q SG+ ++AE IN  R++SHFR VHRGS+F E
Sbjct: 305 NENLGNAMEYFLSTGNLVS--SSGLDLQQTSGYTVVAEKINFYRFISHFRMVHRGSFFAE 362

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           ++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I+        + IP ++  LG
Sbjct: 363 LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIATSDVDS--SAIPGLVAQLG 420

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYL 581
              ++ V  ++ E +++V LDGRI+G+   + A  +   LR  K+ G   +P+ LEI Y+
Sbjct: 421 ---ISNVSSALLEDSVVVQLDGRILGFCSLKQAKVISDTLRYWKVEGTHNVPRELEIGYI 477

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
             P    G YPG+Y+FT   R+ RPV  L    ++++G FEQ +M I  T  E   G +T
Sbjct: 478 --PMSNGGQYPGVYMFTQSARLYRPVKYLPLDGLDYVGPFEQPYMTIACTEPEIVSGEST 535

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E   T+ LS +AN  P  D NQSPRNMYQCQMGKQ+MGTP     Y+   K YRLQT 
Sbjct: 536 HVEYDPTNILSIVANQTPFSDFNQSPRNMYQCQMGKQSMGTPGTATAYRTDNKSYRLQTG 595

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            +P  R   ++   +DNFP G NA+VAVISYTGYDM+DA I+NKS++ERGF HG I+K+ 
Sbjct: 596 QTPVVRAPLHNEYGLDNFPNGMNAVVAVISYTGYDMDDAFIMNKSAHERGFGHGTIYKTK 655

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +EL  G    G++ +              FG         +V   W+            
Sbjct: 656 KVELNDGSRTKGSKRVTK-----------LFGFAP----DGIVKADWRL----------- 689

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSY----WKESENRYVTC-------RYSGKEEMCVE 870
               KL  DGL +VG  + + D + +Y    +  S+  YV         +Y   E   +E
Sbjct: 690 ----KLDDDGLPHVGTMMQKGDILCAYHTVTYDASKQEYVNKDGQTSFEKYKDDEVGFIE 745

Query: 871 VVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSG 930
            VR+    ++ G+       I  R+ R+P +GDKF+SR GQKG+ S KWP  D+PF++SG
Sbjct: 746 EVRIIG--SDTGAEPLQAVSIKIRVPRSPVIGDKFSSRHGQKGVMSQKWPCIDMPFSESG 803

Query: 931 LVPDIVFNPHGFPSRMTIG 949
           + PDI+ NPH FPSRMTIG
Sbjct: 804 MQPDIIINPHAFPSRMTIG 822


>gi|414870912|tpg|DAA49469.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea mays]
          Length = 1128

 Score =  527 bits (1357), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 347/949 (36%), Positives = 487/949 (51%), Gaps = 135/949 (14%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           L  L  PH+ SFD+ LD+GLD  +E I P+                 +  P   A P  +
Sbjct: 21  LRELFRPHVESFDYFLDKGLDEMIESIRPM---------------GHVLSPMRGARPGVL 65

Query: 125 HFNKYYPTE-ARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLT 183
                YP E  RQ R  Y G F V V + ++  A    T   G +PIML SK CHLR   
Sbjct: 66  ---PIYPQEQCRQARISYHGEFKVEVCFQYNEGAQIRHTFNFGHLPIMLMSKLCHLRGAD 122

Query: 184 PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYI 243
           P +L+  GE   E GGYFI GG E+LVR+L+  +RN+P+ + RN++  RG  ++D  V I
Sbjct: 123 PHKLVFHGEEATEMGGYFICGGMERLVRILVLQKRNYPMGLVRNSFLKRGAGYTDKAVVI 182

Query: 244 RSVKRDESATNNVLHFVTNGSAR--FMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG- 300
           R V+RD+S+    L+++ NGSAR  F    R+ +  +G++     + +    D ++F   
Sbjct: 183 RCVQRDQSSVTIKLYYILNGSARLGFWLGGREFLLPVGIVL----KALIDASDREIFTSL 238

Query: 301 -----------------QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLS 343
                            Q+  E+ Q  L  + E  + DY     I  HL++  DKF  L 
Sbjct: 239 TCCYSDKHGRGKGVVSTQLIGERAQIVLDEVAEAVLKDY-----IFVHLENNHDKFNLLI 293

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KSGTSAVLKESDIY 398
            M  KL+ +V      D+ D++  QE +  G L+   LK       +     +L+E+   
Sbjct: 294 FMLQKLYALVDQTASPDNPDALQYQEALLPGHLFTVFLKDRLQEWLRKSKRLILEEAAKN 353

Query: 399 AAFR--------------ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
             F                +S+  A+ + +  GNV++   S L L Q  G  I AE +N 
Sbjct: 354 KGFDLGNALEIRKFLTKYTTSVGRAVESMIKVGNVNS--RSGLDLPQREGMTIHAERLNF 411

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
            RY+SHFR+VHRGS F +MR++  R+L  ++WGF+CPVHTPDG PCGLLNH+T+ C++S 
Sbjct: 412 HRYISHFRSVHRGSAFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVSS 471

Query: 505 YIPSKVLAQ--------IPSVLVSLGMLPLTPVI-QSIPEQALMVMLDGRIVGYILDQIA 555
           +  S+ + +        + + LV +GM P+ P I Q+ P + L V LDG I+G I   + 
Sbjct: 472 FYNSEGVIKNFGEMKKLLSAELVRVGMNPVLPKIEQTGPPEVLHVHLDGCILGTIASAMI 531

Query: 556 TSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL---- 610
              V  LR LK++    IP+ LE+ Y+  P    G +PGLYLFT P R +RPV NL    
Sbjct: 532 EKAVNYLRTLKLLAHSGIPEDLEVGYV--PPSFNGAFPGLYLFTNPARFVRPVRNLFILS 589

Query: 611 -AAGNIEWIGTFEQVFMDI-CIT-----MKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
               +IE IG FEQ FM+I C        +E +P   TH E+  T  LS +ANL P  D 
Sbjct: 590 DGKQSIELIGPFEQAFMEIRCPDGGDGGRQEPFPA--THEEIHPTAILSVVANLTPWSDH 647

Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
           NQSPRNMYQCQM KQTMG      +++   K + LQTP +P  R   Y    MD FP GT
Sbjct: 648 NQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRTGTYTKYCMDEFPSGT 707

Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
           NAIVAV+SYTGYDMEDAMILNKS+ ERG   G I+++  I+L +                
Sbjct: 708 NAIVAVLSYTGYDMEDAMILNKSAVERGMFRGHIYQTECIDLST---------------- 751

Query: 784 SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD 843
                          + R  V + +  K    RD +N      +  DGL  +G  ++  +
Sbjct: 752 ---------------KSRDNVPETF-AKSILTRDTSN-----VIDSDGLPRLGQAVHPNE 790

Query: 844 PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
             YS      N     +  G E   ++ V ++   ++ G    N   I  R  RNP +GD
Sbjct: 791 QYYSVHNSLTNVIRPVKLKGTEPAFIDYVAVNGTGSKCGLQKAN---IRLRRVRNPIIGD 847

Query: 904 KFASRAGQKGICSVKWPAEDLPFT-DSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKG+CS  WP  D+PF+ ++G+ PD++ NPH FPSRMTI  L
Sbjct: 848 KFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAML 896



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+NY+G E +YSGV G+ M  +IF G V+YQRLRHMVSDK+Q +
Sbjct: 945 GFNYHGNEVLYSGVFGTEMDCEIFIGPVYYQRLRHMVSDKFQVR 988


>gi|1350832|sp|P28365.2|RPA2_EUPOC RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
           polymerase I subunit 2
 gi|578407|emb|CAA47067.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
          Length = 1166

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 329/951 (34%), Positives = 495/951 (52%), Gaps = 104/951 (10%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTL-----KLNIVKAAISEPKVPAGPVGIHF 126
           HI SFDF +   L+ A E + P ++ +  ++      KL +   +    +   G +    
Sbjct: 23  HIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLGEIDYDS 82

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           +  YP+E RQ +  Y+ P   T+   +D +    F  ++G +P M + K C+L+ LT  +
Sbjct: 83  HILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNLKGLTKKE 142

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           L +RGE   E+GGYFIV G+EK++R+LI  +RN PIA KR+ +  RG  F+D GV +R V
Sbjct: 143 LAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDYGVQMRCV 202

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMM-----------QSLHEE-------- 287
           + D +A    L ++++GS      ++K   L+ ++           + ++E         
Sbjct: 203 RDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYERIVKGNFNQ 262

Query: 288 -----------------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILP 330
                             I+    SK   G  F+  L       ++++  D  L+  I  
Sbjct: 263 RQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDIDAGDLFLSKHICI 322

Query: 331 HLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL--------- 381
           H D Y  KF  L  M  KL+  V   V+LD+ DS+ +Q+++ GG LYLQ+L         
Sbjct: 323 HTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQILSEKLFDCLH 382

Query: 382 --------KKEKSGTSAVLKESDIYAAFRASS----IESAMTNFLATGNVSAGKNSTLQL 429
                   K+ K      +K  D+    + +     I   M NFLATGN+ +  N  L L
Sbjct: 383 INLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGNLISRTN--LDL 440

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
           MQ SGF I+ + +N +R++SHFR++HRG YF E +++  R+L  ++WGFICPVHTPDG P
Sbjct: 441 MQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKLLPESWGFICPVHTPDGAP 500

Query: 490 CGLLNHLTTNC-QISEYIPSKVLAQIPSVLVSLGMLPLTP-VIQSIPEQALMVMLDGRIV 547
           CGLLNH++ +C  I        + +  ++L  LGM  ++  +  +       V+ DG  +
Sbjct: 501 CGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHTGYYPVIFDGIHL 560

Query: 548 GYILDQIATSLVPKLRMLKIVGEK----IPKSLEIVYLKRPEKGMGL-YPGLYLFTGPGR 602
           GY+   I  S V  LR LK    +    IP++LEI ++        L +PG++L + P R
Sbjct: 561 GYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAFIPFSGYSRNLQWPGIFLASTPAR 620

Query: 603 MLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPD 662
             RPV NL    IEWI   EQ+ + I  T ++  P  TTH+EL   + LS +A++    +
Sbjct: 621 FTRPVKNLHYNCIEWISPLEQMNLSIACTDEDITPE-TTHQELDPINILSIVASVGVFAE 679

Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
            NQSPRNMYQCQM KQTMGTP  N +++   K+YRL  P  P  +       D++ +P G
Sbjct: 680 YNQSPRNMYQCQMAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSG 739

Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
           TNA+VAVISYTGYD+EDAMI+NKSSYERGF HG ++KS   +L    N   T  + S   
Sbjct: 740 TNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNES-NSQSTRGIKSS-- 796

Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER 842
                       V Y+ L ++            +D +   LE+ + PDGL  +G++L + 
Sbjct: 797 ------------VRYKFLNNVSQ----------KDKSKIKLEN-IDPDGLPKIGSQLTKG 833

Query: 843 DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ--RNPT 900
            P    +   +      ++   E+  +E VR+           P+   IGY I+  R P 
Sbjct: 834 KPELCIFDTLKRGAKLSKFKDSEKARIETVRVCG----NDDKNPDNLSIGYTIRYSRIPV 889

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKF+SR GQKG+ SV WP  D+PFT++G+ PD++ NPH FPSRMT+G L
Sbjct: 890 IGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMGML 940



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ G+NY+G E MYSG+ G+ ++A IF GVV+YQRLRHMVSDK Q +
Sbjct: 978  LDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQAR 1024


>gi|145489775|ref|XP_001430889.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397990|emb|CAK63491.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1115

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 328/955 (34%), Positives = 502/955 (52%), Gaps = 115/955 (12%)

Query: 60  KQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG--------KTLKLNIVKAA 111
           +Q + L      HI SF+++   GL      ++PIE  + G        K +K+ I +  
Sbjct: 4   QQGDQLRVAAKHHIESFNYLYTHGLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQ 63

Query: 112 ISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIM 171
           I  P    G +G   N+  PT+ RQ +  Y+ P   T+    D     T    +G +PI+
Sbjct: 64  IGMP-TQQGMLG--DNRVLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLSLGEIPIL 120

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           +KS++CHL  L+  +L+++ E  +E+GGYFI+ G+EK++R+LI  +RN+PIA KR  +KN
Sbjct: 121 VKSQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKN 180

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA--RFMFSHRK-SMCLLGMMQSLHE-- 286
           +G  FS   V ++ V+ D+ A    LH++ +G+   R +   ++  M ++ ++++L +  
Sbjct: 181 KGFNFSPYAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDMN 240

Query: 287 -------------------------------EGIHTQHDSKVFFGQIFKEKLQYDLRHLN 315
                                           GI+TQ D+  + G++ + +L        
Sbjct: 241 DYQIYQQIVRSQADKSDISDRVEVMIADAKSRGINTQKDALEYIGRLLRVELNIFNPETT 300

Query: 316 EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
           ++++    L   I  HLD+  DK   L     KL+ +    +  D+ DS++ QE++  G 
Sbjct: 301 DLQVGRIFLREHICVHLDNDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVLLSGH 360

Query: 376 LYLQLLK----------KEKSGTSAVLKESDI--YAAFR-----ASSIESAMTNFLATGN 418
           LY   L+          +EK    A  ++S +   A F+      +++   + NFLATGN
Sbjct: 361 LYTAYLREKLEDLLVGVREKILKDATKEQSKLKDLAYFKRCFDLQTTVGEKLENFLATGN 420

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
           + +   + L LM+ASGF I+A+ +N MR++SHFR+VHRGSYF +M+++  R+L  D WGF
Sbjct: 421 LRS--QTGLDLMEASGFTIIADKLNNMRFLSHFRSVHRGSYFAQMKTTTVRKLLPDVWGF 478

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL 538
           +CPVHTPDG PCGLLNH+T +C +    P +    I  +L  LG+     +     +  L
Sbjct: 479 VCPVHTPDGGPCGLLNHITMSC-VPLTHPDE--QDIEELLFPLGVQSQRLIYS---KNDL 532

Query: 539 MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT 598
            V+L+G+++GY+   +  +    +R+ K  G  I ++ E+  L R E    L+PG+Y+ T
Sbjct: 533 PVVLNGKLIGYLNSSLLPTFEHTIRVYKSNG-TIKETTEVACLPRQENKSPLFPGIYINT 591

Query: 599 GPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLI 658
              R++RPV+NL    IEWI   EQ+ M I  T  +     T ++E+     LS LA+ +
Sbjct: 592 TVARLMRPVINLKLNTIEWISPLEQINMSIACTQADIRTD-TQYQEIDPAYILSILASNV 650

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P  + NQSPRNMYQCQM KQTMG+PC N+ Y+   K+YR+  P  P  R   YD     +
Sbjct: 651 PFLNYNQSPRNMYQCQMAKQTMGSPCHNYPYRFDNKMYRILFPQKPVVRCFGYDDYQFAD 710

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
           +  GTNAIVAVISYTGYDMEDAMIL KSSYERGF HG I+KS               + Y
Sbjct: 711 YASGTNAIVAVISYTGYDMEDAMILCKSSYERGFGHGIIYKS---------------SEY 755

Query: 779 SGVDGSMMQAQIF--FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
           S  D   ++ ++     V  Y +++  +             P N      L P GL    
Sbjct: 756 SLNDDKEVKYKLLSQIPVQLYNQIKSQI-------------PVN------LLPYGLPEQS 796

Query: 837 AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
             + +   + + + +S+ + V   +S       E  R+        S       I YRI 
Sbjct: 797 QVVTKGTAVLALY-DSQLQQVKVHHSKDS----ETARIEQVAVVNKSENDVSVMIKYRIN 851

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           RNP +GDKF+SR GQKG+ S+ WP  D+PF++SG+VPDI+ NPH FPSRMTIG L
Sbjct: 852 RNPIIGDKFSSRHGQKGVMSLLWPQIDMPFSESGMVPDIIINPHAFPSRMTIGML 906



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           ++ GYNY+G ET+YSG+ G+ ++  I+FGVV+YQRLRHMVSDK Q +
Sbjct: 944 IKHGYNYHGNETLYSGIYGTPLKVDIYFGVVYYQRLRHMVSDKSQAR 990


>gi|255578257|ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
 gi|223530519|gb|EEF32401.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
          Length = 1159

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 353/980 (36%), Positives = 503/980 (51%), Gaps = 164/980 (16%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           L  L   HI SFD+M++ GL++ +++I P       K L                     
Sbjct: 21  LQELTRHHIDSFDYMIERGLEIMLDNIKPESSRTKHKRL--------------------- 59

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E RQ +  Y+G F   V + + GKA        G++PIMLKS+ CHL  +  
Sbjct: 60  -----LPFECRQAKISYTGKFEADVCFEYHGKAVIREKYNFGQLPIMLKSRLCHLYGVDS 114

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
            QL+   E   E GGYFI+ G E++VRLLI  +RN+P++  R ++++R   ++D  V IR
Sbjct: 115 QQLVSFNEESAEMGGYFILNGLERVVRLLIMPKRNYPMSTVRGSFRDRREGYTDKAVVIR 174

Query: 245 SVKR------DESATNNVLHFVTNGSAR--FMFSHRKSMCLLGM-MQSLHE-------EG 288
            V+       D+S+ +  L+++ +GSAR  F    R+ +   G+ +++L E       E 
Sbjct: 175 CVREYQSSLTDQSSVSVKLYYLRSGSARLGFWIQGREYLLPAGIVLKALAETTDREIYEK 234

Query: 289 IHTQHDSK------VFFGQIFKEKLQYDL---------------RHLNE----------- 316
           +   +D K          Q+  E+ +  L               RH+ E           
Sbjct: 235 LTCCYDEKYEKAKGAVGSQLVGERAKIILDEVRDLSLFTQSECLRHIGEHFQPVMDGLEK 294

Query: 317 ---VEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
                +   +L + I  HL++Y DKF  L  M  KLF +V     +D+ DS+  QE++  
Sbjct: 295 ETFSNVAHAVLKDYIFVHLNNYDDKFNLLIFMLQKLFSLVDQTSVVDNPDSLQNQEVLLP 354

Query: 374 G---SLYLQ------------LLKKEKSGTS-----AVLKESDIYAAFRASSIESAMTNF 413
           G   ++YL+            +L++E +  +     +VL    +     +++I  A+ N 
Sbjct: 355 GHLVTIYLKEKLEEWLRKAKKVLQEEIAKNNNFNFLSVLDVKKVIDKNPSTTISLAVENM 414

Query: 414 LATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRT 473
           L TG +     + L L Q +G+ + AE +N +R++S FRAVHRG+ F  +R++  R+L  
Sbjct: 415 LKTGRLVT--QTGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTSVRKLLP 472

Query: 474 DAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK--------VLAQIPSVLVSLGMLP 525
           ++WGF+CPVHTPDG PCGLLNH+T +C+I+ Y  S+        +   I  VL SLGM  
Sbjct: 473 ESWGFLCPVHTPDGEPCGLLNHMTRSCRITSYFDSQGAVKDFFDIRKSILGVLTSLGMTS 532

Query: 526 LTP-VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
             P ++Q+ P Q L V+LDGR+VG I       +V  LR LK+     IP  LE+ Y+  
Sbjct: 533 SLPKLVQAGPPQVLSVLLDGRVVGSIPSSQVEKVVVHLRRLKVAASSVIPDDLEVGYV-- 590

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLA--AG---NIEWIGTFEQVFMDI-CIT-----M 632
           P    G +PGLYLFT P R +RPV N++  AG   NIE IG FEQVFM+I C        
Sbjct: 591 PLSMGGAFPGLYLFTSPSRFIRPVKNISIPAGEGENIELIGPFEQVFMEIRCPDGGNGGR 650

Query: 633 KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
            +A+P   TH E+  TD LS +ANL P  D NQSPRNMYQCQM KQTM     + R++  
Sbjct: 651 SDAFPA--THEEIHPTDMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQSLRFRAD 708

Query: 693 GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
            KLY LQTP +P  R   Y    +D +P GTNAIVAV++YTGYDMEDAMILNKSS ERG 
Sbjct: 709 QKLYHLQTPQTPIVRTSSYTKYCVDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGM 768

Query: 753 AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
            HG I              Y TET+    +GS                    SD+ Q   
Sbjct: 769 CHGQI--------------YQTETIDLSEEGSR-------------------SDRAQR-- 793

Query: 813 YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVV 872
            F R   +K+L   +  DGL YVG  ++  +P  S + E  N   T    G + + V+ V
Sbjct: 794 MFRRSNIDKSLHSVIDSDGLPYVGQMIHPNEPYCSIYNEITNTTRTNNRKGSDPVIVDYV 853

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGL 931
            + +   +          I +R  RNP +GDKF+SR GQKG+CS  WP  D+PF+  +G+
Sbjct: 854 AIDTKNKK----HLQKVNIRFRHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 909

Query: 932 VPDIVFNPHGFPSRMTIGFL 951
            PD++ NPH FPSRMTI  L
Sbjct: 910 RPDLIINPHAFPSRMTIAML 929



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 5/56 (8%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ-----TKDYFGRDP 818
            G+NY+G E +YSGV G+ +  +IF G V+YQRLRHMVSDK+Q     T D   R P
Sbjct: 981  GFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQITRQP 1036


>gi|145542267|ref|XP_001456821.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424634|emb|CAK89424.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1115

 Score =  524 bits (1349), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 330/955 (34%), Positives = 498/955 (52%), Gaps = 115/955 (12%)

Query: 60  KQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG--------KTLKLNIVKAA 111
           +Q + L      HI SF+++   GL      ++PIE  + G        K +K+ I +  
Sbjct: 4   QQGDQLRVAAKHHIESFNYLYTHGLIEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQ 63

Query: 112 ISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIM 171
           I  P    G +G   N+  PT+ RQ +  Y+ P   T+    D     T    +G +PI+
Sbjct: 64  IGMP-TQQGMLG--DNRVLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLSLGEIPIL 120

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           +KS++CHL  L+  +L+++ E  +E+GGYFI+ G+EK++R+LI  +RN+PIA KR  +KN
Sbjct: 121 VKSQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKN 180

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA--RFMFSHRK-SMCLLGMMQSLHE-- 286
           +G  FS   V ++ V+ D+ A    LH++ +G+   R +   ++  M ++ ++++L +  
Sbjct: 181 KGFNFSPFAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDMN 240

Query: 287 -------------------------------EGIHTQHDSKVFFGQIFKEKLQYDLRHLN 315
                                           GI+TQ D+  + G++ + +L        
Sbjct: 241 DYQIYQQIVRSQADKSDISDRVEVMIADAKSRGINTQKDALEYIGRLLRVELNIFNPETT 300

Query: 316 EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
           ++++    L   I  HL++  DK   L     KL+ +    +  D+ DS++ QE++  G 
Sbjct: 301 DLQVGRIFLREHICVHLENDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVLLSGH 360

Query: 376 LYLQLLK----------KEKSGTSAVLKESDI--YAAFR-----ASSIESAMTNFLATGN 418
           LY   L+          +EK    A  ++S +   A F+      +++   + NFLATGN
Sbjct: 361 LYTAYLREKLEDLLVGVREKILKDASKEQSKLKDLAYFKRCFDLQTTVGEKLENFLATGN 420

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
           + +   + L LM+ASGF I+A+ +N MR++SHFR+VHRGSYF +M+++  R+L  D WGF
Sbjct: 421 LRS--QTGLDLMEASGFTIIADKLNNMRFLSHFRSVHRGSYFAQMKTTTVRKLLPDVWGF 478

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI--PEQ 536
           +CPVHTPDG PCGLLNH+T +C     +P   L       V   + PL    Q +   + 
Sbjct: 479 VCPVHTPDGGPCGLLNHITMSC-----VP---LTHPDEQDVEELLFPLGVQSQRLIYSKN 530

Query: 537 ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYL 596
            L V+L+G+++GY+   +  +    LR+ K  G  I ++ E+  L R E    L+PG+Y+
Sbjct: 531 DLPVVLNGKLIGYLNSSLLPTFEHTLRVYKSNG-TIKETTEVACLPRQENKSPLFPGIYI 589

Query: 597 FTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
            T   R++RPV+NL    IEWI   EQ+ M I  T  +     T ++E+     LS LA+
Sbjct: 590 NTTVARLMRPVINLKLNTIEWISPLEQINMSIACTQADIRTD-TQYQEIDPAYILSILAS 648

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
            +P  + NQSPRNMYQCQM KQTMG+PC N+ Y+   K+YR+  P  P  R   YD    
Sbjct: 649 NVPFLNYNQSPRNMYQCQMAKQTMGSPCHNYPYRFDNKMYRILFPQKPVVRCFGYDDYQF 708

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            ++  GTNAIVAVISYTGYDMEDAMIL KSSYERGF HG I+KS    L         E 
Sbjct: 709 ADYASGTNAIVAVISYTGYDMEDAMILCKSSYERGFGHGIIYKSSEYSLNE-----DKEV 763

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
            Y  +    +Q         Y +++  V             P N      L P GL    
Sbjct: 764 KYKLLSQIPIQL--------YNQIKAQV-------------PVN------LLPYGLPEQS 796

Query: 837 AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
             + +   + + + +S+ + V   +S       E  R+        S       I YRI 
Sbjct: 797 QVVTKGSAVLALY-DSQLQQVKVYHSKDS----ETARIEQVAVVNKSENDVSVMIKYRIN 851

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           RNP +GDKF+SR GQKG+ S+ WP  D+PF++SG+VPDI+ NPH FPSRMTIG L
Sbjct: 852 RNPIIGDKFSSRHGQKGVMSLLWPQIDMPFSESGMVPDIIINPHAFPSRMTIGML 906



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           ++ GYNY+G ET+YSG+ G+ ++  I+FGVV+YQRLRHMVSDK Q +
Sbjct: 944 IKHGYNYHGNETLYSGIYGTPLKVDIYFGVVYYQRLRHMVSDKSQAR 990


>gi|326504892|dbj|BAK06737.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 978

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 359/981 (36%), Positives = 491/981 (50%), Gaps = 149/981 (15%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE--IYGKTLKLNIVKAAISEPKVPAGPV 122
           L  L  PHI SFD+ LDEGLD  +  I P+E        TL++++ K  +  P +  G +
Sbjct: 24  LRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVL-PPMKDGRL 82

Query: 123 GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           G      YP E RQ R  YSG F V   + ++  A    T   G++PIML SK CHLR  
Sbjct: 83  G---QPLYPQECRQGRISYSGEFKVEAVFQFNDGAPIRQTFNFGQLPIMLMSKLCHLRGA 139

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
              +LI  GE   E GGYFI GG E+L+R+LI  +RN+P+ + R A+  RG  ++D  V 
Sbjct: 140 DSRKLIYHGEEATEMGGYFISGGLERLIRILILQKRNYPMGMVRGAFIKRGAGYTDKAVV 199

Query: 243 IRSVKRDESATNNVLHFVTNGSAR--FMFSHRKSMCLLGMM------------------- 281
           +R V  D+S+    L+++ NGSAR  F F  R+ +  +G++                   
Sbjct: 200 MRCVHHDQSSVTVKLYYLQNGSARLGFWFGGREILLPVGIILKALIDTSDREIFASLTCC 259

Query: 282 ---------------------QSLHEE----GIHTQHDSKVFFGQIFKEKLQ----YDLR 312
                                Q + +E     + T+    V  G+ F+  ++     D  
Sbjct: 260 YSDKRERGKGVVSTQLIGERTQIILDEVRALSLFTRTQCLVHIGKYFRSAMEGFEKDDYE 319

Query: 313 HLNEVEICDYMLTNCILPHL-DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
            + E  I DY     IL HL +D   KF  L  M  KL+ +V      D+ D++  QE +
Sbjct: 320 TVAEAVIKDY-----ILVHLQNDNHAKFNLLIFMLQKLYALVDQTTSPDNPDALQFQEAL 374

Query: 372 TGGSLYLQLLKKE-----KSGTSAVLKESDIYAAFRA-SSIESAMTNFLATGNVSAGK-- 423
             G L    LK       +     +++E     +F   SS+E  +  FL+    S G+  
Sbjct: 375 LPGHLITVFLKDRIQDWLQKSKRLIMEEITKNKSFELNSSLE--IRKFLSKYTTSVGRAI 432

Query: 424 -----------NSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLR 472
                       S L L Q  G  I AE +N  RY+SHFR+VHRGS F +MR++  R+L 
Sbjct: 433 EALIKVGRANSQSMLDLPQREGMTIQAERLNFHRYISHFRSVHRGSSFAKMRTTTVRKLL 492

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPSVLVSLGML 524
            ++WGF+CPVHTPDG PCGLLNH+T+ C+IS    S        K+  ++   LV  GM+
Sbjct: 493 PESWGFLCPVHTPDGEPCGLLNHMTSTCRISSCYNSEGAIKDFQKIKDKLLVELVRGGMI 552

Query: 525 PLTPVIQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLK 582
           PL P ++   P + + V LDG IVG I       +V  LR LK++     P+ LE+ Y+ 
Sbjct: 553 PLLPKMEHTGPPEIMHVHLDGCIVGSIASAKIEEVVNYLRRLKLLAHPATPEDLEVGYV- 611

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAA-----GNIEWIGTFEQVFMDI-CIT----- 631
            P    G YPGLYLFT P R +RPV NL +      +IE IG FEQ FM+I C       
Sbjct: 612 -PLSLGGAYPGLYLFTSPARFVRPVKNLVSLPDGEPHIELIGPFEQAFMEIRCPDGGDGG 670

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            KE +P   TH E+  T  LS +ANL P  D NQSPRNMYQCQM KQTMG      +++ 
Sbjct: 671 RKEKFPA--THEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRT 728

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             K + LQTP SP  R   Y    MD FP GTNAIVAV+SYTGYDMEDAMILNKS+ +RG
Sbjct: 729 DVKAFHLQTPQSPIVRTATYKKYHMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRG 788

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
              G IF++  I+L +      TE +                                  
Sbjct: 789 MFRGDIFQTECIDLSAKR----TENV---------------------------------P 811

Query: 812 DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEV 871
           + F + P +K   D +  DGL  VG  +   +  YS +          R  G E   ++ 
Sbjct: 812 EIFAKSPLSKGTGDVIDSDGLPRVGETVVPYEQYYSVYNTLTGAIRPVRLKGTEPAAIDY 871

Query: 872 VRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT-DSG 930
           V ++   ++G     N   I  R +RNP +GDKF+SR GQKG+CS  WP  D+PF+ ++G
Sbjct: 872 VALNGTNSKGSLQKVN---IRLRRKRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTG 928

Query: 931 LVPDIVFNPHGFPSRMTIGFL 951
           + PD++ NPH FPSRMTI  L
Sbjct: 929 MRPDLIINPHAFPSRMTIAML 949


>gi|414870913|tpg|DAA49470.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea mays]
          Length = 1162

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 348/975 (35%), Positives = 491/975 (50%), Gaps = 153/975 (15%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           L  L  PH+ SFD+ LD+GLD  +E I P+                 +  P   A P  +
Sbjct: 21  LRELFRPHVESFDYFLDKGLDEMIESIRPM---------------GHVLSPMRGARPGVL 65

Query: 125 HFNKYYPTE-ARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLT 183
                YP E  RQ R  Y G F V V + ++  A    T   G +PIML SK CHLR   
Sbjct: 66  ---PIYPQEQCRQARISYHGEFKVEVCFQYNEGAQIRHTFNFGHLPIMLMSKLCHLRGAD 122

Query: 184 PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYI 243
           P +L+  GE   E GGYFI GG E+LVR+L+  +RN+P+ + RN++  RG  ++D  V I
Sbjct: 123 PHKLVFHGEEATEMGGYFICGGMERLVRILVLQKRNYPMGLVRNSFLKRGAGYTDKAVVI 182

Query: 244 RSVKRDESATNNVLHFVTNGSARFMF---------------------SHRK--------- 273
           R V+RD+S+    L+++ NGSAR  F                     S R+         
Sbjct: 183 RCVQRDQSSVTIKLYYILNGSARLGFWLGGREFLLPVGIVLKALIDASDREIFTSLTCCY 242

Query: 274 -----------SMCLLG-----MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEV 317
                      S  L+G     ++  +    I T+    V  GQ F+  ++    + + +
Sbjct: 243 SDKHGRGKGVVSTQLIGERAQIVLDEVRNLSILTRTQCLVHIGQYFRSVME-GFENDDYI 301

Query: 318 EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY 377
            + + +L + I  HL++  DKF  L  M  KL+ +V      D+ D++  QE +  G L+
Sbjct: 302 TVAEAVLKDYIFVHLENNHDKFNLLIFMLQKLYALVDQTASPDNPDALQYQEALLPGHLF 361

Query: 378 LQLLKKE-----KSGTSAVLKESDIYAAFR--------------ASSIESAMTNFLATGN 418
              LK       +     +L+E+     F                +S+  A+ + +  GN
Sbjct: 362 TVFLKDRLQEWLRKSKRLILEEAAKNKGFDLGNALEIRKFLTKYTTSVGRAVESMIKVGN 421

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
           V++   S L L Q  G  I AE +N  RY+SHFR+VHRGS F +MR++  R+L  ++WGF
Sbjct: 422 VNS--RSGLDLPQREGMTIHAERLNFHRYISHFRSVHRGSAFAKMRTTSVRKLLPESWGF 479

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ--------IPSVLVSLGMLPLTPVI 530
           +CPVHTPDG PCGLLNH+T+ C++S +  S+ + +        + + LV +GM P+ P I
Sbjct: 480 LCPVHTPDGEPCGLLNHMTSTCRVSSFYNSEGVIKNFGEMKKLLSAELVRVGMNPVLPKI 539

Query: 531 -QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGM 588
            Q+ P + L V LDG I+G I   +    V  LR LK++    IP+ LE+ Y+  P    
Sbjct: 540 EQTGPPEVLHVHLDGCILGTIASAMIEKAVNYLRTLKLLAHSGIPEDLEVGYV--PPSFN 597

Query: 589 GLYPGLYLFTGPGRMLRPVMNL-----AAGNIEWIGTFEQVFMDI-CIT-----MKEAYP 637
           G +PGLYLFT P R +RPV NL        +IE IG FEQ FM+I C        +E +P
Sbjct: 598 GAFPGLYLFTNPARFVRPVRNLFILSDGKQSIELIGPFEQAFMEIRCPDGGDGGRQEPFP 657

Query: 638 GITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
              TH E+  T  LS +ANL P  D NQSPRNMYQCQM KQTMG      +++   K + 
Sbjct: 658 A--THEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFH 715

Query: 698 LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
           LQTP +P  R   Y    MD FP GTNAIVAV+SYTGYDMEDAMILNKS+ ERG   G I
Sbjct: 716 LQTPQTPIVRTGTYTKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVERGMFRGHI 775

Query: 758 FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +++  I+L +                               + R  V + +  K    RD
Sbjct: 776 YQTECIDLST-------------------------------KSRDNVPETF-AKSILTRD 803

Query: 818 PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
            +N      +  DGL  +G  ++  +  YS      N     +  G E   ++ V ++  
Sbjct: 804 TSN-----VIDSDGLPRLGQAVHPNEQYYSVHNSLTNVIRPVKLKGTEPAFIDYVAVNGT 858

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT-DSGLVPDIV 936
            ++ G    N   I  R  RNP +GDKF+SR GQKG+CS  WP  D+PF+ ++G+ PD++
Sbjct: 859 GSKCGLQKAN---IRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLI 915

Query: 937 FNPHGFPSRMTIGFL 951
            NPH FPSRMTI  L
Sbjct: 916 INPHAFPSRMTIAML 930



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+NY+G E +YSGV G+ M  +IF G V+YQRLRHMVSDK+Q +
Sbjct: 979  GFNYHGNEVLYSGVFGTEMDCEIFIGPVYYQRLRHMVSDKFQVR 1022


>gi|359487166|ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis
           vinifera]
          Length = 1142

 Score =  520 bits (1340), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 341/976 (34%), Positives = 491/976 (50%), Gaps = 158/976 (16%)

Query: 63  EFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPV 122
           E L  L   HI SFD +++ GL+  +  + P       +T++                  
Sbjct: 9   EPLRELFQHHIDSFDHLVEFGLETLLMSVKPRS----ARTMR------------------ 46

Query: 123 GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
               +  YP E RQ +  YSG     V + +           +G+ PIMLKSK CHLR  
Sbjct: 47  ----DALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHLRGA 102

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
            P +L+   E   E GGYFI+ G E++VRLLI  +RN+P+++ RN++++R   ++D  V 
Sbjct: 103 DPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVV 162

Query: 243 IRSVKRDESATNNVLHFVTNGSAR--FMFSHRKSMCLLGM-MQSLHEEGIHTQHDS---- 295
           IR V+ D+SA    L+++ NGSAR  F    R+ +  +G+ +++L +   H  ++S    
Sbjct: 163 IRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCC 222

Query: 296 --------KVFFG-QIFKEKLQYDLRHLNEVE---------------------------- 318
                   K   G Q+  E+++  L  + ++                             
Sbjct: 223 YSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYS 282

Query: 319 -ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--- 374
            + D +L   I  HLD+ +DKF  L  M  KLF ++      D+ D +  QE++  G   
Sbjct: 283 IVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLI 342

Query: 375 SLYL-----------------QLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATG 417
           ++YL                 ++ K++    S++     +     +  I  A+ N L TG
Sbjct: 343 TIYLKEKLQEWLYKARRLLQDEINKRKNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTG 402

Query: 418 NVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWG 477
            +     S L L Q +G  + AE +N +R++SHFRAVHRG+ F  +R++  R+L  +AWG
Sbjct: 403 RLVT--QSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWG 460

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPSVLVSLGMLPLTP- 528
           F+CPVHTPDG PCGLLNH+ + C+I+ Y  S        K+   I SVL+ +GM P  P 
Sbjct: 461 FLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPK 520

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKG 587
           ++Q+ P + L V+LDGR+VG I      + V  LR LK+     IP  LE+ Y+  P   
Sbjct: 521 LVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYI--PLSM 578

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLA-----AGNIEWIGTFEQVFMDI-CIT-----MKEAY 636
            G YPGLYLFT P R +RPV N++       +IE IG FEQV+M+I C        +  +
Sbjct: 579 GGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIF 638

Query: 637 PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
           P   TH E+  T  LS +A+L P  D NQSPRNMYQCQMGKQTM         +   KLY
Sbjct: 639 PA--THEEIHPTGMLSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLY 696

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
            LQTP +P  R   Y    MD FP GTNAIVAV++Y+GYDMEDAMILNKSS +RG  HG 
Sbjct: 697 HLQTPQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQ 756

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           I+++  I+L    N                                  SD+ Q    F R
Sbjct: 757 IYQTETIDLSDENNK---------------------------------SDRGQR--MFRR 781

Query: 817 DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
              +K+    +  DGL YVG  +N  +P  S + E  +     +  G E + V+ V + +
Sbjct: 782 SNVDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSEPVIVDYVALDA 841

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDI 935
              +     P    I +R  RNP +GDKF+SR GQKG+CS  WP  D+PF+  +G+ PD+
Sbjct: 842 KNKK----HPQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 897

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPH FPSRMTI  L
Sbjct: 898 IINPHAFPSRMTIAML 913



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 743  LNKSSYERGFAHGCIFKSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
            L K++ E G     +   +   L S G+NY+G E +YSG  G+ +  +IF G V+YQRLR
Sbjct: 938  LRKANGEAGSESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLR 997

Query: 802  HMVSDKWQTK 811
            HMVSDK+Q +
Sbjct: 998  HMVSDKFQVR 1007


>gi|358379516|gb|EHK17196.1| hypothetical protein TRIVIDRAFT_183490 [Trichoderma virens Gv29-8]
          Length = 1198

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 332/966 (34%), Positives = 506/966 (52%), Gaps = 143/966 (14%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFD--FMLDEGLDLAVEDIAPIEFEIY---------- 99
           F  PP   + +  L L   PHI SF+  F  D    L    +A I  +++          
Sbjct: 23  FRNPPTDHSAYPALQLAVNPHIESFNAIFRGDGKPGLLAHGLADIGTKVFLDGNDRAGPE 82

Query: 100 GKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
           GK  L++ I +  + +P+VP         + +P E R+  + Y G  + T  +S +G   
Sbjct: 83  GKNRLQIRIKEVTLQKPQVPPSNKLALNREIFPAECRERHATYRGKLSATFEYSINGGDV 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             FT+E+G+VPIM+KS RCHL N +PA L+ R E  +E GGYFIV G+EK++RLL  N+R
Sbjct: 143 VEFTRELGQVPIMIKSNRCHLENNSPALLVSRKEESEELGGYFIVNGNEKIIRLLQVNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R ++ NRG  ++  G+ +RSV+ DE++  NVLH++ +G+  F FS RK+  L+
Sbjct: 203 NFPMAINRPSFTNRGAGYTTYGIILRSVRPDETSQTNVLHYLKDGNVTFRFSWRKNEYLI 262

Query: 279 GMMQSLHE----------EGI------------------------------HTQHDSKVF 298
            ++  L            EG+                              +++ +++ +
Sbjct: 263 PVIMILKALVETNDREIFEGLIGPMGSKAAQNTFLTDRVELLLRTYKAYRLYSKSETRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            GQ F+  L      +++ E+    L   +  HL +         DKF  +  M  KL+ 
Sbjct: 323 LGQKFRVVLGVP-ETMSDYEVGTEFLRKIVCVHLGNVDVTEKQDLDKFHMVLFMIRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------------KSGTS 389
           +  G   +D+ D+I  QEI+ GG LY Q+LK+                        S TS
Sbjct: 382 LAAGECAVDNPDAIQNQEILLGGFLYSQILKERLDEFLSVSVRTAIRDYLRRHPAVSFTS 441

Query: 390 AVLKESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
              ++      FR S+  I + +  FL+TGN+ +   S L L Q +GF ++AE +N +R+
Sbjct: 442 EEFRKEFPGGIFRKSNENIANGLEYFLSTGNLVSA--SGLDLQQTAGFTVVAEKLNFLRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYI 506
           +SHFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH+T  C+I ++Y+
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHMTHKCKIMTDYV 559

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++ IP+++  LG +  +    +  +++++VMLDG+I+G+   + +  +   LR  K
Sbjct: 560 D---VSNIPALVAELGAVETS---SASTDESVVVMLDGKIIGWSTPKESLRIGDCLRYWK 613

Query: 567 IVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LE+ Y+  P    G YPGLYL + P RM+RPV  L     +++G  EQ +
Sbjct: 614 VEGSHNVPLQLEVGYV--PPSNGGSYPGLYLTSTPSRMVRPVKYLPLQKEDYVGPHEQPY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G++TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP  
Sbjct: 672 MSIAVVPQEIESGVSTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             R++   K YR+QT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 AIRHRTDNKSYRIQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGF HG ++K+  I L+        +++              FG   +  +     
Sbjct: 792 SAHERGFGHGTVYKTKKITLKDDSRTRAAKSVVK-----------MFGFAPHSYV----- 835

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY--------- 856
                         + A +  L  DGL +VG  + E D + + W      Y         
Sbjct: 836 --------------SAAYQGMLDDDGLPHVGRMVKEDDVLCA-WHTVTPDYNGNLVNLDG 880

Query: 857 VTC--RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGI 914
           +T   +Y   E   +E VR+     E GS       I  RI R+P +GDKF+SR GQKG+
Sbjct: 881 ITHYEKYKDSEIGFIEEVRLIGA--ESGSEPLQTISIKIRIPRSPVIGDKFSSRHGQKGV 938

Query: 915 CSVKWP 920
            S KWP
Sbjct: 939 LSQKWP 944



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++G+NY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 981  MKAGFNYHGNEPMYSGITGEELGADIYIGVVYYQRLRHMVNDKYQVR 1027


>gi|115398832|ref|XP_001215005.1| DNA-directed RNA polymerase I polypeptide 2 [Aspergillus terreus
           NIH2624]
 gi|114191888|gb|EAU33588.1| DNA-directed RNA polymerase I polypeptide 2 [Aspergillus terreus
           NIH2624]
          Length = 1205

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 329/977 (33%), Positives = 498/977 (50%), Gaps = 165/977 (16%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF------------- 96
           F  PP  +  +  L     PH+ SF+ + D    LD A++DI    F             
Sbjct: 23  FRHPPKDRTAYPSLADAIKPHVDSFNALFDGSKVLDAALKDIGTKTFIDGEPETPEQKKA 82

Query: 97  -EIYGKT------LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPFNVT 148
            +  G+       L + I +  +  P +P        N+  YP+E R+  + Y G     
Sbjct: 83  RQAEGRRPPKRNRLNVRIREVFLDRPAIPPSNKFTTRNRNIYPSECRERHATYRGKLRAR 142

Query: 149 VAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
           + +  +        +E+G+VPIML++ RCHL   TP +L++  E  +E GGYFIV G+EK
Sbjct: 143 LEYQVNNGDWVESVRELGQVPIMLRTNRCHLEKATPEELVQHKEESEELGGYFIVNGNEK 202

Query: 209 LVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
           L+R+L+  +RN P+AI R ++  RG  ++  G+ IRSV+ D+++  NVLH++++G+  F 
Sbjct: 203 LIRMLVVGKRNFPMAIIRGSFVKRGHTYTKYGIQIRSVRPDQTSQTNVLHYLSDGNVTFR 262

Query: 269 FSHRKSMCLL-------------------GMMQSLHEEGI-------------------- 289
           FS RK+  L+                   G++ +   EGI                    
Sbjct: 263 FSWRKNEYLIPVMMILKALVETNDREIFEGLVGNASSEGINNTFVTDRVELLLRTYKGYN 322

Query: 290 -HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLC 341
            HT+   + + G+ FK  L       NE    ++ L   +LPHL +        +DKF  
Sbjct: 323 VHTRSSCRAYLGEKFKPVLGVPSDMSNEDAGTEF-LRKVVLPHLGNQNVTETQDYDKFKM 381

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------------ 383
           +  M  KL+ +V G    D+ D++  QEI+ GG LY  +LK+                  
Sbjct: 382 IMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFGPILRDWSN 441

Query: 384 ------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                       E+   S ++K S+        ++ SA+  FL+TGN+ +   + L L Q
Sbjct: 442 RNNGAKFTDPAFERDFLSKIVKRSN-------ENLGSALEYFLSTGNLVS--PTGLDLQQ 492

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
           ASG+ +MAE IN  R++SHFR +HRGS+F +++++  R+L  ++WGF+CPVHTPDG PCG
Sbjct: 493 ASGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCG 552

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGY 549
           LLNHL   C IS       ++ +P +LV LG+   + V   +S+P     V +DGRIVGY
Sbjct: 553 LLNHLAHKCLIS--TSDIDVSHLPKLLVQLGVRSESSVSLDESVP-----VQIDGRIVGY 605

Query: 550 ILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
              + A  +   LR  K++    +PK LEI Y+  P    G YPG+Y+F+   RM RPV 
Sbjct: 606 CSPKQARVVADTLRYWKVMEMHNVPKELEIGYV--PNSNGGQYPGIYIFSQAARMFRPVK 663

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
            L    ++++G FEQ F++I    ++  PG++TH E + T+ LS +AN+ P  D NQSPR
Sbjct: 664 YLLLDKLDYVGPFEQPFLEIACLPEDLIPGVSTHIEFTPTNILSIVANMTPFSDYNQSPR 723

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           NMYQCQM KQTMGTP     Y+   KLYRLQT  +P  RP  Y+   +DNFP GTNA+VA
Sbjct: 724 NMYQCQMSKQTMGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVA 783

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           +ISYTGYDM+DAMI+NKSS+ERGF HG I+K+    L+   +  G          S  + 
Sbjct: 784 IISYTGYDMDDAMIINKSSHERGFGHGTIYKTKIHSLDDKDSRRGR---------SRREI 834

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
              FG      ++     +W+               + L  DGL ++GA++ E   + ++
Sbjct: 835 TKLFGFAPGGEIKA----EWR---------------NSLDEDGLPHIGARVREGSLVAAW 875

Query: 849 ----WKESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQR 897
               +  + + YV         +Y   EE  ++ +R+     E G        + YR+ R
Sbjct: 876 HTVRYDAATDSYVNVDGITHFIKYKDAEEGYIDSIRVMGA--ETGVEPCQSISVKYRVPR 933

Query: 898 NPTVGDKFASRAGQKGI 914
            P +GDKF+SR GQKG+
Sbjct: 934 KPVIGDKFSSRHGQKGM 950



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E +YSG+ G    A IF GVVHYQRLRHMV+DK+Q +
Sbjct: 994  KAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVR 1039


>gi|296087844|emb|CBI35100.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 329/912 (36%), Positives = 470/912 (51%), Gaps = 132/912 (14%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           +  YP E RQ +  YSG     V + +           +G+ PIMLKSK CHLR   P +
Sbjct: 40  DALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHLRGADPQK 99

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           L+   E   E GGYFI+ G E++VRLLI  +RN+P+++ RN++++R   ++D  V IR V
Sbjct: 100 LVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCV 159

Query: 247 KRDESATNNVLHFVTNGSAR--FMFSHRKSMCLLGM-MQSLHEEGIHTQHDS-------- 295
           + D+SA    L+++ NGSAR  F    R+ +  +G+ +++L +   H  ++S        
Sbjct: 160 REDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEK 219

Query: 296 ----KVFFG-QIFKEKLQYDLRHLNEVE-----------------------------ICD 321
               K   G Q+  E+++  L  + ++                              + D
Sbjct: 220 YEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVAD 279

Query: 322 YMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---SLYL 378
            +L   I  HLD+ +DKF  L  M  KLF ++      D+ D +  QE++  G   ++YL
Sbjct: 280 AVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYL 339

Query: 379 -----------------QLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSA 421
                            ++ K++    S++     +     +  I  A+ N L TG +  
Sbjct: 340 KEKLQEWLYKARRLLQDEINKRKNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVT 399

Query: 422 GKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
              S L L Q +G  + AE +N +R++SHFRAVHRG+ F  +R++  R+L  +AWGF+CP
Sbjct: 400 --QSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCP 457

Query: 482 VHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPSVLVSLGMLPLTP-VIQS 532
           VHTPDG PCGLLNH+ + C+I+ Y  S        K+   I SVL+ +GM P  P ++Q+
Sbjct: 458 VHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQA 517

Query: 533 IPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLY 591
            P + L V+LDGR+VG I      + V  LR LK+     IP  LE+ Y+  P    G Y
Sbjct: 518 GPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYI--PLSMGGAY 575

Query: 592 PGLYLFTGPGRMLRPVMNLA-----AGNIEWIGTFEQVFMDI-CIT-----MKEAYPGIT 640
           PGLYLFT P R +RPV N++       +IE IG FEQV+M+I C        +  +P   
Sbjct: 576 PGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIFPA-- 633

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH E+  T  LS +A+L P  D NQSPRNMYQCQMGKQTM         +   KLY LQT
Sbjct: 634 THEEIHPTGMLSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHLQT 693

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
           P +P  R   Y    MD FP GTNAIVAV++Y+GYDMEDAMILNKSS +RG  HG I+++
Sbjct: 694 PQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIYQT 753

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             I+L    N                                  SD+ Q    F R   +
Sbjct: 754 ETIDLSDENNK---------------------------------SDRGQR--MFRRSNVD 778

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
           K+    +  DGL YVG  +N  +P  S + E  +     +  G E + V+ V + +   +
Sbjct: 779 KSANSLIDSDGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSEPVIVDYVALDAKNKK 838

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNP 939
                P    I +R  RNP +GDKF+SR GQKG+CS  WP  D+PF+  +G+ PD++ NP
Sbjct: 839 ----HPQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 894

Query: 940 HGFPSRMTIGFL 951
           H FPSRMTI  L
Sbjct: 895 HAFPSRMTIAML 906



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 743  LNKSSYERGFAHGCIFKSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
            L K++ E G     +   +   L S G+NY+G E +YSG  G+ +  +IF G V+YQRLR
Sbjct: 931  LRKANGEAGSESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLR 990

Query: 802  HMVSDKWQTK 811
            HMVSDK+Q +
Sbjct: 991  HMVSDKFQVR 1000


>gi|118396434|ref|XP_001030557.1| DNA-directed RNA polymerase, beta subunit family protein
           [Tetrahymena thermophila]
 gi|89284864|gb|EAR82894.1| DNA-directed RNA polymerase, beta subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 1178

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 321/953 (33%), Positives = 497/953 (52%), Gaps = 117/953 (12%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEF------EIYG------KTLKLNIVKAAISEPKVPA 119
           HI SF+F+ DEGL    + + P+E       E Y       K++K+ I    I+ P + A
Sbjct: 32  HIDSFNFIYDEGLKKITQYLQPVEIIKEQRSEEYKQSYLPFKSMKVWIENLEIATP-IRA 90

Query: 120 GPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHL 179
                  NK  P E R  R  Y  P    VA S DG    +    +G +PI+++S  CHL
Sbjct: 91  DSGVAEDNKLMPEECRIGRKTYGAPLFAKVARSIDGGKPESINIRLGDIPIIVRSDHCHL 150

Query: 180 RNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL 239
             +TP +L++  E  +E+GGYFIV G+EK+VR+LI  +RN+PIA  R  + NRG  ++  
Sbjct: 151 AKMTPKELVKAHEDCNEFGGYFIVNGNEKIVRMLILQKRNYPIAFIRAGYVNRGPNYTPF 210

Query: 240 GVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK------SMCLLGMMQSLHEEGIH--- 290
            V ++ V+ D  +    LH+V++GS      HRK      ++ +L  +  + +  I+   
Sbjct: 211 AVQMKCVREDLYSKTITLHYVSDGSVFLRILHRKQEFLIPAIVILKALADISDLQIYNKL 270

Query: 291 ---------------------------TQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYM 323
                                      T+ +     G+ F+  L      + + ++ +  
Sbjct: 271 VKGQSSKSAISDRVEVLIRGSKAMSLNTKEECLAHLGKNFRVVLNITNPEITDKQVGEIF 330

Query: 324 LTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK- 382
           +   I  HL++  DK   +  M  KL+ +V   +  D+ DS+  QE++  G LY+ +L+ 
Sbjct: 331 MNENICVHLNNNIDKLNTICVMISKLYALVSDEICPDNLDSLQNQEVLLPGHLYMMILRE 390

Query: 383 --------------KEKSGTSAVLKESDIYAAFRASSIESAMTN----FLATGNVSAGKN 424
                         K+ S     ++   I    +A   + ++ N    FL+TGN+ +   
Sbjct: 391 KLEEMLLGIRAKVFKDGSRPEEAIRIPHIAYLKKAIEFQGSIGNKIEYFLSTGNLKS--Q 448

Query: 425 STLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
           + L LMQA GF I+A+ +N MR++SHFR+VHRG+YF EM+++  R+L  + WGFICPVHT
Sbjct: 449 TGLDLMQAKGFTIIADKLNNMRFLSHFRSVHRGAYFTEMKTTTVRKLLPENWGFICPVHT 508

Query: 485 PDGTPCGLLNHLTTNCQ--ISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI-PEQALMVM 541
           PDG PCGLLNH++ +C+          +   + ++   +GM P+   +  + P  ++ +M
Sbjct: 509 PDGGPCGLLNHISQSCKPLTRPGYDGNIHFNLVTLCTEIGMNPIVNDLSIVFPPTSVTIM 568

Query: 542 LDGRIVGYILDQIATSLVPKLRMLKIVGEK---IPKSLEIVYLKRPE-KGMGLYPGLYLF 597
           LDGR++GYI  + A +    L+ LKI+ +    IP  LEI Y+ +   +   ++PG++L 
Sbjct: 569 LDGRVIGYIESKNAQTFCQSLKYLKIMQDPTRLIPADLEIGYVPKLNLEKQNIFPGIFLH 628

Query: 598 TGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI-CITMKEAYPGITTHRELSKTDFLSNLAN 656
           T   R +RPV +L    +EWI  FEQV + I CI  +E     T ++ELS +  LS L +
Sbjct: 629 TNEARFVRPVKHLKLNALEWITPFEQVHLSIACI--EEDIRNDTEYQELSPSYILSILPS 686

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
            IP  + NQSPRNMYQCQM KQTMGT   N+ Y+   ++YRL     P  + +  ++  +
Sbjct: 687 QIPFLNYNQSPRNMYQCQMAKQTMGTSMHNFPYRFDNRIYRLLNGQIPMVKGMDPESYGL 746

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            ++P GTNAIVAVISYTGYDMEDAMILNKSSYERGF HGC++K+        Y+Y   E 
Sbjct: 747 SDYPSGTNAIVAVISYTGYDMEDAMILNKSSYERGFGHGCVYKN--------YSYDVAE- 797

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
                                  L    + K++  +   ++     + + L  DG+  +G
Sbjct: 798 -----------------------LNKEKNSKFKMLNEV-KNIDKSQIAEGLEGDGIPAIG 833

Query: 837 AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
           + + +   ++  +   +N   T  +   E   ++ + +     +  +  P   Y   RI 
Sbjct: 834 SVIKKGTAVFQIYDTQKNAMKTFYHKDSELGRLDGIAL---VHDEKTKEPRVEY-RIRIP 889

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           RNP +GDKF+SR GQKG+ SV WP  D+PFT+SG+ PD++ NPH FPSRMTIG
Sbjct: 890 RNPIIGDKFSSRHGQKGVLSVLWPHIDMPFTESGITPDVIINPHAFPSRMTIG 942



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/44 (65%), Positives = 34/44 (77%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYNYYG E MYSG  G MM+  I+ G+V+YQRLRHMVSDK Q +
Sbjct: 1004 GYNYYGNEVMYSGTYGCMMKVDIYMGIVYYQRLRHMVSDKAQAR 1047


>gi|403339388|gb|EJY68951.1| DNA-directed RNA polymerase I subunit RPA2 [Oxytricha trifallax]
          Length = 1189

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 335/994 (33%), Positives = 490/994 (49%), Gaps = 163/994 (16%)

Query: 72  HIASFDFMLDEGLD------LAVEDIAPIEFEI------------------------YGK 101
           HI SF++ +++ L       LA E  AP E EI                          K
Sbjct: 29  HIESFEYAIEQCLPRICQNLLAAELSAPTEAEIARNPSANKIQYPFKKMLIWFENFQLRK 88

Query: 102 TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
            ++ +     IS  +      G   +K YP+E R     YS P   T+A   D +     
Sbjct: 89  PIRQDQSTGLISLSQSSQAAAGGDGDKIYPSECRIRSLTYSAPLYATIARKIDNEPEEKV 148

Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
           T  +G +P+M++S  CHL  LT  +L+++ E   E+GGYFI+ G+E++VR+LI  +RN+P
Sbjct: 149 TVPLGDIPVMIRSSNCHLYGLTEEELVKKHEDMAEFGGYFIINGNERIVRMLIMTKRNYP 208

Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG-- 279
           +A  R  + NRG LF+   V +R V+ D  A    LH++++G+      ++K   L+   
Sbjct: 209 VAFSRPTFINRGKLFTPFAVQMRCVRDDLFAQTLTLHYLSDGNCSMRLIYQKQEFLIPAY 268

Query: 280 ----------------------------------MMQSLHEEGIHTQHDSKVFFGQIFKE 305
                                             ++Q  ++  +++Q+    + G  F+ 
Sbjct: 269 VILKALADVTDAQIYNKLVKGYFKNRQIGDRVEVLLQDGNKLCLYSQNQCLAYLGSRFRM 328

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
            L      ++++++ ++ +   +    ++Y DKF  L  M  KL+ VV    +LD+ DS 
Sbjct: 329 ALIGVQSDMSDIDVGNFFIQRHLFVQTNNYKDKFNTLCIMIEKLYAVVAQECELDNLDSP 388

Query: 366 MLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESA-------MTNFLATGN 418
             QE++  G LY  LL  EK     +  ++ I    R  + +         M   + T  
Sbjct: 389 SNQEVLLSGHLYASLLA-EKLQDLLIGAKAKIIRDLRNPNFDRQQIRNPIYMKKMIDT-Q 446

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
           VS GK   ++   A+G +I   N++ +       ++HRG YF EM+++  R+L  +AWGF
Sbjct: 447 VSVGKK--MEHFLATGNLISRTNLDLI-------SIHRGQYFAEMKTTTVRKLLPEAWGF 497

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIP-----------SKVLAQIPSVLVSLGMLPLT 527
           +CPVHTPDG PCGLLNH+T++C     IP            + L    S+L  LGM P++
Sbjct: 498 LCPVHTPDGGPCGLLNHITSSC-----IPLAKEDGLLCRQGEALKNFKSLLAQLGMNPIS 552

Query: 528 PVIQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-------EKIPKSLEIV 579
                I P + L ++LDG ++GY+  ++A  LV  LR LKI         E +PK+LE+ 
Sbjct: 553 SDFGLIYPYKFLPILLDGVLLGYVDPEVAPQLVKSLRALKIQQSNTNQFYESVPKTLEVS 612

Query: 580 YL--------------------KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIG 619
           YL                    KR  K    +PG++L +   R +RPV NL  G +EWIG
Sbjct: 613 YLAPTFPPEEASDNPETQGQTNKRGTKN-KFFPGIFLASSVSRFVRPVQNLEVGGVEWIG 671

Query: 620 TFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
             EQV + I   ++E     TTH+E+   + LS +A+ IP  D NQSPRNMYQCQM KQT
Sbjct: 672 PLEQVNLSIA-CLEEDIRSDTTHQEIDPINVLSMIASTIPFADYNQSPRNMYQCQMAKQT 730

Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
           MGTP  N  Y+   K+YR+  P  P  R  +Y+  D   +P GTNA+VAVISYTGYDMED
Sbjct: 731 MGTPYHNHPYRMDNKVYRILFPQEPLVRTENYNNYDFRQYPSGTNAVVAVISYTGYDMED 790

Query: 740 AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
           AMI+NKS+YERGF HGC++KS   E+                       Q+       QR
Sbjct: 791 AMIINKSAYERGFGHGCVYKSYIKEVNE---------------------QVMGASSSKQR 829

Query: 800 LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            R +  +K++       D      E  L  DG+  +G +L    P    +     +    
Sbjct: 830 YRMLNQNKYR------EDQKIDLKEKNLDTDGIPSIGHQLTHGSPELCTYDTVLGKPKYV 883

Query: 860 RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY--RIQRNPTVGDKFASRAGQKGICSV 917
            +   E   VE VR+     E GS   N   IGY  R +RNP +GDKF+SR GQKG+ SV
Sbjct: 884 SFKDNEPARVENVRLMG--DEKGSA--NNVNIGYTIRYERNPVIGDKFSSRHGQKGVLSV 939

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            WP ED+PFT+SG+ PDI+ NPH FPSRMTIG L
Sbjct: 940 LWPQEDMPFTESGISPDIIINPHAFPSRMTIGML 973



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GYNYYGTETMYSG+ G  M+  IF GVV+YQRLRHMVSDK Q +
Sbjct: 1011 LKQGYNYYGTETMYSGIFGDQMKVDIFIGVVYYQRLRHMVSDKSQAR 1057


>gi|302411196|ref|XP_003003431.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium albo-atrum
           VaMs.102]
 gi|261357336|gb|EEY19764.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium albo-atrum
           VaMs.102]
          Length = 1208

 Score =  514 bits (1323), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 332/979 (33%), Positives = 500/979 (51%), Gaps = 130/979 (13%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFML-DEG----LDLAVEDIAPIEF------EIYG 100
           F  PP     +  L    +PHI SF+ +  ++G    LD  + DI    F         G
Sbjct: 23  FKNPPKDHTAYPALQAAVSPHIESFNALFRNDGKPSLLDHGLADIGTKTFLDGDDRTPQG 82

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKY------YPTEARQTRSVYSGPFNVTVAWSWD 154
           +  KL I    +S  K    P     NKY      +P E R+    Y G  + T  +  +
Sbjct: 83  QRNKLTIRYKGVSLQKSQLPPS----NKYAKTREIFPAECRERHVTYRGKLSATFEFRIN 138

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                 FT+++G++PIM+KS RCHL   +P  L++R E  +E GGYFIV G EK++RLL 
Sbjct: 139 DGDAKEFTRDLGQMPIMVKSNRCHLEGNSPDLLVKRKEESEELGGYFIVNGIEKIIRLLQ 198

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVY----IRSVKRDESATNNVLHFVTNGSARFMF- 269
            NRRN P+     A   RG  +S  G++    +   K   +    +L  +   + R +F 
Sbjct: 199 VNRRNFPMPSTDPASPTRGAGYSPHGIHSFAQLGPTKPFSTNVMMILKALVETNDREIFE 258

Query: 270 -------SHRKSMCLLG-----MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEV 317
                  S       L      ++++    G++T+ +++ + G+ F+  L      ++  
Sbjct: 259 GLIGSKGSKSAQNTFLTDRVELLLRTYTSYGLYTKTETRAYLGEKFRVVLGVP-DTMSHY 317

Query: 318 EICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI 370
           ++    L   +L HL +         DKF  L  M  KL+ +V G   +D+ D+I  QE+
Sbjct: 318 DVGTEFLKRIVLVHLGNVDVTEQQDSDKFKMLLFMIRKLYALVAGECSVDNPDAIQNQEV 377

Query: 371 MTGGSLYLQLLKKE-----KSGTSAVLKE------------SDIYAAFRAS-------SI 406
           + GG LY  +LK+       +   A L++             D    F A+       S+
Sbjct: 378 LLGGFLYGMILKERLDEFLSTAVRASLRDYHRKFPAKTFTSQDFQKDFPATIFRLANESL 437

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
            S +  F++TGN+++   S L L Q +G+ ++AE +N +R++SHFR +HRG++F E++++
Sbjct: 438 GSGLEYFMSTGNLTS--PSGLDLQQTAGYTVVAEKLNFLRFISHFRMIHRGAFFAELKTT 495

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLP 525
             R+L  ++WGF+CPVHTPDG+PCGLLNHL   C+I ++ + +  L   P+++  +G + 
Sbjct: 496 TVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCRIMTDPVDTSTL---PALVAEMGAVS 552

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRP 584
            +    +  +++++VMLDGR++G+   Q +  +   LR  K+ G   +P  LEI Y+  P
Sbjct: 553 TS---SAATDESVVVMLDGRVLGFSTPQESIRIADTLRYWKVEGTHGVPLELEIGYV--P 607

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
               G YPGLY+ +   RM+RPV  L     +++G  EQ +M I +  KE   G +TH E
Sbjct: 608 PSNGGSYPGLYIASKAARMVRPVKYLPLQKQDYVGPHEQPYMSIAVVEKEIISGESTHVE 667

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
              T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP     ++   KLYR+QT  +P
Sbjct: 668 FDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNKLYRIQTGQTP 727

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             R   ++    DNFP G N++VAVISYTGYDM+DAMILNKSS+ERGF HG I+K   + 
Sbjct: 728 VVRSPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMILNKSSHERGFGHGTIYKVKKVS 787

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+                 +  Q    FG            + +   +Y           
Sbjct: 788 LKD-----------DSRSRTAKQVTKLFG---------FAPNSFVKGEY----------R 817

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWK------------ESENRYVTCRYSGKEEMCVEVV 872
             L  DGL YVG  + E D + +Y              + + +Y   +Y   E+  +E V
Sbjct: 818 SMLDEDGLPYVGRMVQEGDILCAYHTVTADFNGNLTNLDGQTQYE--KYKESEQAFIEEV 875

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
           R+    +E G+       I  R+ R P +GDKF+SR GQKG+ S KWPA D+PFT+SG+ 
Sbjct: 876 RIIG--SENGNEPAQTVSIKLRVPRAPVIGDKFSSRHGQKGVASQKWPATDMPFTESGMQ 933

Query: 933 PDIVFNPHGFPSRMTIGFL 951
           PD + NPH FPSRMTIG  
Sbjct: 934 PDTIINPHAFPSRMTIGMF 952



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 990  MKAGYNYHGNEPMYSGITGEELSADIYIGVVYYQRLRHMVNDKYQVR 1036


>gi|356548837|ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
           max]
          Length = 1175

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 354/990 (35%), Positives = 498/990 (50%), Gaps = 144/990 (14%)

Query: 55  GKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIE-FEIYGKTLKLNI-VKAAI 112
           G  PD   E L  L   HI SFD+M+D GLD  +  I P+E F+ +  T KL I +   +
Sbjct: 6   GSVPD--FEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTST-KLRIWLDNPV 62

Query: 113 SEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE---VGRVP 169
             P               P E RQ +  YSG   + V + ++    G   +E    G+ P
Sbjct: 63  LYPPQKERISRTMREALLPFECRQAKISYSGKITIDVCFQYND---GPIIRENVNFGQFP 119

Query: 170 IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAW 229
           IML+SK C+LR   P +L+   E   E GGYFI+ G E++VRLLI  +RN+P+++ RN++
Sbjct: 120 IMLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSF 179

Query: 230 KNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGI 289
            +R   ++D  V IR V+ D+S+ +  L+++ NGSAR  F  R    LL +   L     
Sbjct: 180 SDRREGYTDKAVVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALID 239

Query: 290 HTQHDSKVFFGQIFKEK-----------------------------------LQYDLRH- 313
            T  +  V     + EK                                   L+Y   H 
Sbjct: 240 TTDREIYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHF 299

Query: 314 ---LNEVE------ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
              +NE++      + D +L +CIL HLD+ +DKF  L  M  KLF ++      D+ DS
Sbjct: 300 QPVMNELKNDSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDS 359

Query: 365 IMLQEIMTGGSLYLQLLKKE-----KSGTSAVLKE----------SDIYAAFRA------ 403
           +   E++  G L    LK++     + G   +L E          SDI    +       
Sbjct: 360 LQNHEVLLPGHLITLYLKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSP 419

Query: 404 SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEM 463
             + +A+ N L TG +     + L L Q +G+ + AE +N +R++SHFRAVHRG+ F  +
Sbjct: 420 KQVSTAVENMLKTGRLVT--QTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGL 477

Query: 464 RSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIP 515
           R++  R+L  ++WGF+CPVHTPDG PCGLLNH+T   +I+ +  S        K+   I 
Sbjct: 478 RTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSIL 537

Query: 516 SVLVSLGMLPLTP-VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIP 573
           +VL+ +GM P  P +    P +AL V+LDG +VG I       +V  +R LK+     IP
Sbjct: 538 NVLLEVGMTPSLPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIP 597

Query: 574 KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-----NIEWIGTFEQVFMDI 628
             +E+ Y+  P    G YPGLYL T P R +RPV N++       NIE IG FEQVFM+I
Sbjct: 598 DDMEVGYV--PLSMGGAYPGLYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEI 655

Query: 629 -CIT-----MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
            C        K ++P   TH E+  T  LS +ANL P  D NQSPRNMYQCQM KQTM  
Sbjct: 656 RCPDGGDGGRKSSFPA--THEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAF 713

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
                +++   KLY LQTP +P  R   Y   ++D FP GTNAIVAV++YTGYDMEDAMI
Sbjct: 714 SSQTIQHRADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMI 773

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           LNKSS ERG  HG I+++  I+L        TE        S M                
Sbjct: 774 LNKSSVERGMFHGQIYQTETIDL--------TEQGGRSDRSSRM---------------- 809

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
                      F +    K+    +  DGL +VG  +   +P  S + E  +   T +  
Sbjct: 810 -----------FRKSNIEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEVTSSIHTLKRK 858

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
           G E + V+ V  ++       +      I +R  RNP +GDKF+SR GQKG+CS  WP  
Sbjct: 859 GSEAVYVDYV--AADVKNKKHLQK--VNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDV 914

Query: 923 DLPFT-DSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PF+  +G+ PD++ NPH FPSRMTI  L
Sbjct: 915 DMPFSGTTGMRPDLIINPHAFPSRMTIAML 944



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 743  LNKSSYERGFAHGCIFKSMFIEL-ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
            + K S E     G +   + + L E G+NY+G E +YSGV G+ +  +IF G V+YQRLR
Sbjct: 969  VTKDSGESDSKSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLR 1028

Query: 802  HMVSDKWQTK 811
            HMVSDK+Q +
Sbjct: 1029 HMVSDKFQVR 1038


>gi|357146829|ref|XP_003574126.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Brachypodium
           distachyon]
          Length = 1181

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 341/984 (34%), Positives = 491/984 (49%), Gaps = 144/984 (14%)

Query: 59  DKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE--IYGKTLKLNIVKAAISEPK 116
           D +   L  L  PHI SFD+ LDEGLD  +  I P++        TL++++ K  +  P 
Sbjct: 17  DGEYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMDISHPSSSDTLRISLEKGHLLPPL 76

Query: 117 VP---AGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLK 173
                A P+       YP E RQ R  YSG F V   + ++  A    T   G +PIML 
Sbjct: 77  RDVRMAKPL-------YPQECRQARISYSGEFKVDTLFQFNNGAPMRQTFNFGHLPIMLM 129

Query: 174 SKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRG 233
           SK CHLR     +LI  GE   E GGYFI GG E+L+R+L+  +RN+P+ + R A++ RG
Sbjct: 130 SKLCHLRGADSRKLIYHGEEATEMGGYFINGGMERLIRILVLQKRNYPMGMVRGAFEKRG 189

Query: 234 LLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR--FMFSHRKSMCLLGM-MQSLHEEGIH 290
             ++D  V IR V++D+++    L+++ NGSAR  F    R+ +  +G+ +++L +    
Sbjct: 190 PGYTDKAVVIRCVQQDQTSVTVKLYYLQNGSARLGFWLGAREVLLPVGIVLKALIDTSDR 249

Query: 291 T-------------QHDSKVFFGQIFKEKLQYDLRHLNEVE------------------- 318
                         +    V   Q+  E+ Q  L  +  +                    
Sbjct: 250 EIFASLTCCYSDKYERGKGVVSNQLIGERAQIILDEVRALSLLTRTQCLEHIGQYFRSAM 309

Query: 319 ----------ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQ 368
                     + + +L + +L HL +   KF  L  M  KL+ +V      D+ D++  Q
Sbjct: 310 EGFEKDDYQTVAEAVLKDYVLVHLQNNHAKFNLLIFMLQKLYALVDQTASPDNPDALQYQ 369

Query: 369 EIMTGGSLYLQLLKKE-----KSGTSAVLKESDIYAAFR--------------ASSIESA 409
           E +  G L    LK       +     +++E+    +F               ++S+  A
Sbjct: 370 EALLPGYLITVFLKDRIQDWLRKSKRLIIEEATKNKSFEFDNSQEIRKFLCKHSTSVGRA 429

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
           + + +  G   A   S L L Q  G  I AE +N  RY+SHFR+VHRGS F +MR++  R
Sbjct: 430 IESLIKIGR--ANSQSMLDLPQREGMSIQAERLNFHRYISHFRSVHRGSAFAKMRTTTVR 487

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPSVLVSL 521
           +L  ++WGF+CPVHTPDG PCGLLNH+T+ C+IS +  S        K+  ++ + LV  
Sbjct: 488 KLLPESWGFLCPVHTPDGEPCGLLNHMTSACRISSFYHSEGAMKDFEKIKDRLLAELVRG 547

Query: 522 GMLPLTPVIQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIV 579
           GM+PL+P ++   P + L V LDG IVG I       LV  +R LK++     P+ LE+ 
Sbjct: 548 GMIPLSPKMEHTGPPEVLHVHLDGCIVGSIGSAKIEELVNYIRRLKLLAHPATPEDLEVG 607

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA-----GNIEWIGTFEQVFMDI-CIT-- 631
           Y+  P    G YPGLY FT P R +RPV NL +      +IE IG FEQ FM+I C    
Sbjct: 608 YV--PLSIGGAYPGLYFFTSPARFVRPVKNLVSLPDGEPHIELIGAFEQAFMEIRCPDGG 665

Query: 632 ---MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
               KE++P   TH E+  T  LS +ANL P  + NQSPRNMYQCQM KQTMG      +
Sbjct: 666 DGGRKESFPA--THEEIHPTAMLSVVANLTPWSEHNQSPRNMYQCQMAKQTMGFCGQALK 723

Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
           ++   K + LQTP SP  R   Y    MD FP GTNAIVAV+SYTGYDMEDAMILNKS+ 
Sbjct: 724 FRTDVKAFHLQTPQSPIVRTATYKKYHMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAV 783

Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
           +RG   G I+++  I+L +                                     + + 
Sbjct: 784 DRGMFRGDIYQTECIDLST-------------------------------------TRRG 806

Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC 868
              + F +   ++     +  DGL  VG  +   +  YS +          R  G E   
Sbjct: 807 SVAEIFAKSSLSRDSSSVIDSDGLPRVGETIVPNEQYYSTYNTLTGAIRPTRLKGTEPAA 866

Query: 869 VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT- 927
           ++ V ++   ++G     N   I  R +RNP +GDKF+SR GQKG+CS  WP  D+PF+ 
Sbjct: 867 IDYVAVNGTNSKGSLQKVN---IRLRRKRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSA 923

Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
           ++G+ PD++ NPH FPSRMTI  L
Sbjct: 924 NTGMRPDLIINPHAFPSRMTIAML 947



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+NY+G E +YSG+ G+ +  +IF G V+YQRLRHMVSDK+Q +
Sbjct: 997  GFNYHGVEVLYSGLFGTELTCEIFIGPVYYQRLRHMVSDKFQVR 1040


>gi|255070151|ref|XP_002507157.1| predicted protein [Micromonas sp. RCC299]
 gi|226522432|gb|ACO68415.1| predicted protein [Micromonas sp. RCC299]
          Length = 1192

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 340/974 (34%), Positives = 490/974 (50%), Gaps = 118/974 (12%)

Query: 63  EFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT-------LKLNIVKAAISEP 115
           E L  +   H+ASFD+ LD GL   V  +  I  +  G          K+     +I  P
Sbjct: 20  EALRGVARNHLASFDYFLDHGLSDVVRCLDNISIQPSGAQNTSSSPRFKMWFENISIGRP 79

Query: 116 -KVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE--VGRVPIML 172
            +     V     + +P E R++ + Y  P   TVAW++ G  G  F +E  +   P+M+
Sbjct: 80  IREDTTAVRARDPRVFPRECRESSNTYKAPMLATVAWTF-GDVGAIFRREFRICMFPVMV 138

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
            SK C+L   +  +LI RGE   E GGYFI+ G+E+++RLL+  RR++ + +KR A+ +R
Sbjct: 139 ASKVCNLFGFSQDELICRGEEGHEMGGYFILNGNERIIRLLVQQRRHYIMGMKRKAYSSR 198

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG---MMQSLHEE-- 287
           G +++     IR    DE  +   +H+ ++GSAR +F HR+    +    ++++L E   
Sbjct: 199 GPIYTHYATAIRCSANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAGIILRALAEFSD 258

Query: 288 ----------------------------------GIHTQHDSKVFFGQIFKEKLQYDLRH 313
                                             GIH +  +  + G+ F+ +L  +   
Sbjct: 259 SVVQAIVARGLTGLGAQVFAIERIRIILGEAATFGIHNKVQALAYLGEHFRAQLDANPWE 318

Query: 314 LNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
            N  ++   ++   I  HL    DKF  +  M  KL+ +V G    D+ DS+M  EI+  
Sbjct: 319 TN-FDVGKRLICEHIFIHLQSDEDKFNLVLLMMQKLYALVAGQCSADNPDSLMHHEILLP 377

Query: 374 GSLY-------LQ-LLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMT 411
           G L        LQ  L K K   +   +E+  +A              A   ++I     
Sbjct: 378 GILMQIFVREKLQDALHKAKIALNREFEENPNHASADDGEWLSQVAIEAITKTNIGRLAE 437

Query: 412 NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQL 471
            FLATGN+S+   + L L Q SGF I+A+ +N MRY+SHFR+VHRG+YF E+R++  R+L
Sbjct: 438 YFLATGNLSS--RTGLGLTQTSGFTIVADKLNYMRYISHFRSVHRGAYFAELRTTTVRKL 495

Query: 472 RTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS------KVLAQIPSVLVSLGMLP 525
             ++WGF+CPVHTPDG+PCGLLNHL  +C I     S      +  +Q+  VL S G L 
Sbjct: 496 LPESWGFLCPVHTPDGSPCGLLNHLAASCYIHVACESTGEARDRARSQVLKVLSSAGALI 555

Query: 526 L--TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLK 582
           L  +  + S P   L VMLDG I+G++ D  A  +V  LR  K+ G   +   LEI ++ 
Sbjct: 556 LHGSTSLGSAPPAHLTVMLDGLILGFVADSDAKVVVSALRAAKVSGSNGVSSHLEIAHIP 615

Query: 583 RPEKGMG-LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI-CITMKEAYPGIT 640
               G G  +PGLYLF+   RM+RPV+       E IG+ EQ FM I C   ++    I 
Sbjct: 616 LSSCGYGGAFPGLYLFSTSSRMMRPVIQQQNRITENIGSLEQAFMSIRCPDGRQKPTCIA 675

Query: 641 --THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
              H E      LS +A+L P  D NQSPRNMYQCQM KQTMG P  ++ Y+   K+YRL
Sbjct: 676 EHAHEENGPGTILSVVASLTPWSDFNQSPRNMYQCQMAKQTMGMPLHSFCYRPDTKIYRL 735

Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
            TP  P      YD   MDN+P+GTNA+VAVI++TGYDMEDAMI+NK + ERG  H  ++
Sbjct: 736 HTPQRPVAMTGQYDKYQMDNYPLGTNAVVAVIAHTGYDMEDAMIVNKGAMERGLGHATLY 795

Query: 759 KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           K+             T T+ +G D +  Q  +       Q+L   ++  +  K  F  DP
Sbjct: 796 KTE------------TVTLVAGSDENFGQCNVI-----QQKLGSPIA--FTEKHPF--DP 834

Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
                   +  DG    G+       + S    S  R    +  G + + ++ V +SSG 
Sbjct: 835 -------DIDTDGAPRPGSIKQAGSTLCSVVDRSTGRVRLHKIKGSDHVIIDRVSISSGK 887

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVF 937
              G  T     +  R  RNP +GDKF+SR GQKG+ S   P EDLP+ + SG  PDI+ 
Sbjct: 888 ASKGQ-TETKMSVTVRCDRNPIIGDKFSSRHGQKGVLSFLCPEEDLPYIEKSGSRPDILI 946

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMTIG L
Sbjct: 947 NPHAFPSRMTIGML 960



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 13/107 (12%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G+ETM +G+ G      IF G+V+YQRLRHMVSDK+Q +     +P  +      
Sbjct: 1005 GYNYSGSETMVNGLTGERFDVDIFVGLVYYQRLRHMVSDKFQVRSLGPNNPLTQQPIKGR 1064

Query: 828  GPDGLVYVGAKLNERDPMYSYWKE---------SENRYVT--CRYSG 863
               G +  G    ERD + ++              +R+VT  C Y G
Sbjct: 1065 KAGGGIRFGEM--ERDALIAHGSSYLIHDRLHACSDRHVTSLCTYCG 1109


>gi|313246967|emb|CBY35812.1| unnamed protein product [Oikopleura dioica]
          Length = 1185

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 328/983 (33%), Positives = 503/983 (51%), Gaps = 112/983 (11%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           +S+PS+K  +  N+GK P+ +N+ L  +   H+ SFD+ L+EGL      +AP EFE+  
Sbjct: 13  VSSPSIKQTSRVNYGKLPEDKNKQLKFISDTHVQSFDWFLEEGLPNIPNSVAPYEFEMEA 72

Query: 101 KT----LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWS--WD 154
                  +L +    + +P + +  V     + +P+E RQ ++ Y+ P +VT        
Sbjct: 73  NNDQMRFRLEVEHIEVGQPTLESSIV-CKDRRLFPSECRQKKTDYTAPVHVTFNLINLSS 131

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
           G++     K++ ++P+M+ S +CHLR L+P +L+ R E   E GGYFI  G+EK++RLL 
Sbjct: 132 GESQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARKEDHFEIGGYFIASGNEKVIRLLN 191

Query: 215 NNR--RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            NR  RN P+ ++RN WK R   ++D G+ IR +   E  +N  +H         +F  +
Sbjct: 192 MNRTRRNFPLGLRRNGWKRRREGYTDAGLMIRCMDNWERTSNMNVHVTKTNEMEVVFYIQ 251

Query: 273 KSMCLLGMMQ-----------SLHEEGIHT-----QHDSKV------------------- 297
           K +  + MM             ++ E + T      +DS V                   
Sbjct: 252 KQLFHVPMMTVVRALTSWTDLEIYREFMQTMSDEPNYDSAVKRMLKKLVKIQHHFLTQAK 311

Query: 298 FFGQIFKEKLQYDL--RHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQG 355
           F GQ F+    +D+     ++VE     L    L +L++  DK    + M  K F +   
Sbjct: 312 FLGQSFR---IFDICPAWKSDVEAGQAFLKRYCLIYLNNDEDKVRAFALMARKAFRISHN 368

Query: 356 MVQLDSEDSIMLQEIMTGGSLYLQLL--------------------KKEKSGTSAVLKES 395
               D  DS    +++  G L+  +                     K+ + G   V +  
Sbjct: 369 TCATDDIDSPESHDVLLPGHLFQSMTLEFFESYQRSVSMIMAKEYSKQLEKGNDEVGQNM 428

Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
             +A  +  ++       +ATGN+    N  L + Q +G V+ AE IN  R+ SHFR +H
Sbjct: 429 LSFAINKIGNMNQHFKYLIATGNLKT--NDGLGMQQLAGIVVGAEKINFARFYSHFRCIH 486

Query: 456 RGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP 515
           RG++F EMR++ PR+L T AWGFICPVHTPDG PCGLLNHL    +I+  +  +  A++ 
Sbjct: 487 RGAFFMEMRATSPRKLSTAAWGFICPVHTPDGPPCGLLNHLAHTVRIN--VKRENTAKLE 544

Query: 516 SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPK-LRMLKIVG-EKIP 573
            +L+ +G+ P +       E  + V++DG+ +G+I +      V K LR LK    +++P
Sbjct: 545 ELLLEIGVKPCSIKAN---EFDVPVIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVP 601

Query: 574 KSLEIVYLKRPE-KGMG-LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
            +LEIV+   PE KG   ++PG+ L T P RM RP++NL    IE IG  EQV++ + + 
Sbjct: 602 DTLEIVHCPAPENKGEAVMFPGINLLTEPARMYRPLLNLREDKIEMIGIMEQVWLHVTVN 661

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            KE++  +T ++EL     LS LA + P  + N   R + QCQM KQT G P     ++ 
Sbjct: 662 QKESHE-LTEYQELYPAALLSELACMSPFSNMNAGARVILQCQMAKQTFGWPSYTLNHRS 720

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
             K+YR+ TP  P  R   +D+  MD++P+GTN ++AVISYTGYD+EDA  ++K S ERG
Sbjct: 721 DNKMYRILTPQEPLVRSHLHDSWGMDDYPLGTNVMIAVISYTGYDLEDATCVSKMSRERG 780

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
             +G I+K+  ++L+      G     SG                   LR    D++   
Sbjct: 781 MMYGTIYKTKMVDLQDTAQSMGYR---SG-------------------LRLGCRDRFDPN 818

Query: 812 DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRY-SGKEEMCVE 870
           +        K   DKL  DGL + G     +D  Y Y+ E E +Y   +Y S  E+  VE
Sbjct: 819 EL---KAYRKIAGDKLDIDGLPFPGGIFTYQDAYYCYYNEHEQKYSVGKYDSHAEDAIVE 875

Query: 871 VVRMSSGF--TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
            VR+ +     EGG      A I +RI R   +GDK ASR GQKGICS  W   D+P+T+
Sbjct: 876 SVRVFTNKRPQEGGFQQ---AAIQFRIARPINIGDKMASRHGQKGICSRLWATTDMPWTE 932

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           +G+VPD++FNPHGFPSRMT+G +
Sbjct: 933 NGIVPDLIFNPHGFPSRMTVGMM 955



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 12/93 (12%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK------DYFGRDPA 819
            E+G NY+G E MYSG+ G  ++A IFFG V+YQRLRHMV DK+Q +      D + + P 
Sbjct: 994  EAGLNYHGYERMYSGISGEELEADIFFGPVYYQRLRHMVYDKFQARADKGPIDPYTQQPV 1053

Query: 820  NKALE------DKLGPDGLVYVGAKLNERDPMY 846
                        ++  DGL+  GA    RD ++
Sbjct: 1054 KGRARGGGVRMGEMERDGLISHGAAFICRDRLF 1086


>gi|356563684|ref|XP_003550091.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
           max]
          Length = 1175

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 345/983 (35%), Positives = 488/983 (49%), Gaps = 144/983 (14%)

Query: 63  EFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIE-FEIYGKTLKLNI-VKAAISEPKVPAG 120
           E L  L   HI SFD+M D GL+  +  I PIE F+ +  T KL I +   +  P     
Sbjct: 12  EALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTST-KLRIWLDNPVLYPPQKER 70

Query: 121 PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE---VGRVPIMLKSKRC 177
                     P E RQ +  Y+G   + V + ++    G   +E    G+ PIML+SK C
Sbjct: 71  ISRTMREALLPFECRQAKISYAGKITIDVCFQYND---GPIIRENINFGQFPIMLQSKLC 127

Query: 178 HLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS 237
           +LR   P +L+   E   E GGYFI+ G E+++RLLI  +RNHP+++ RN++ +R   ++
Sbjct: 128 NLRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFSDRREGYT 187

Query: 238 DLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKV 297
           D  + IR V+ D+S+ +  L+++ NGSAR  F  R    LL +   L      T  +  V
Sbjct: 188 DKAIVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYV 247

Query: 298 FFGQIFKEK-----------------------------------LQYDLRHLNEVE---- 318
                + EK                                   L+Y   H   V     
Sbjct: 248 NLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVITELK 307

Query: 319 ------ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMT 372
                 + + +L +CIL HLD+ +DKF  L  M  KLF ++      D+ DS+   E++ 
Sbjct: 308 NDSYPIVAEAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLL 367

Query: 373 GGSLYLQLLKKE-----KSGTSAVLKE----------SDIYAAFRA------SSIESAMT 411
            G L    LK++     + G   +L E          SDI    +         + +A+ 
Sbjct: 368 PGHLITLYLKEKLEDWLQKGKRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVE 427

Query: 412 NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQL 471
           N L TG +     + L L Q +G+ + AE +N +R++SHFRAVHRG+ F  +R++  R+L
Sbjct: 428 NMLKTGRLVT--QTGLDLQQRAGYTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKL 485

Query: 472 RTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPSVLVSLGM 523
             ++WGF+CPVHTPDG PCGLLNH+T   +I+ +  S        K+   I +VL+ +GM
Sbjct: 486 LPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNVKDYFKIKMSILNVLLEVGM 545

Query: 524 LPLTP-VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYL 581
            P  P +    P +AL V+LDG +VG I    A  +V  +R LK+     IP  +E+ Y+
Sbjct: 546 TPSLPKIFLPGPPEALTVLLDGCVVGCIASSEAEKVVAHIRELKVSSAAVIPDDMEVGYV 605

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLA-----AGNIEWIGTFEQVFMDI-CIT---- 631
             P    G YPGLYL T P R +RPV N++     + NIE+IG FEQVFM+I C      
Sbjct: 606 --PLSMGGAYPGLYLCTSPSRFVRPVRNISIPSNGSENIEFIGPFEQVFMEIRCPDGGDG 663

Query: 632 -MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ 690
             K ++P   TH E+  T  LS +ANL P  D NQSPRNMYQCQM KQTM       +++
Sbjct: 664 GRKSSFPA--THEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHR 721

Query: 691 GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYER 750
              KLY LQTP +P  R   Y   ++D FP GTNAIVAV++YTGYDMEDAMILNKSS ER
Sbjct: 722 ADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVER 781

Query: 751 GFAHGCIFKSMFIEL-ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           G  HG I+++  I+L E G     +  M                                
Sbjct: 782 GMFHGQIYQTETIDLTEQGGRLDRSSRM-------------------------------- 809

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
               F +    K+    +  DGL +VG  +   +P  S + E  +   T +  G E +  
Sbjct: 810 ----FRKSNLEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNEVTSSIHTLKRKGSEAV-- 863

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT-D 928
                                I +R  RNP +GDKF+SR GQKG+CS  WP  D+PF+ +
Sbjct: 864 --YVDYVAVDVKNKKHLQKVNIRFRHPRNPVIGDKFSSRHGQKGVCSQLWPDVDMPFSGN 921

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           +G+ PD++ NPH FPSRMTI  L
Sbjct: 922 TGMRPDLIINPHAFPSRMTIAML 944



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 743  LNKSSYERGFAHGCIFKSMFIEL-ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
            + K S E     G I   + + L E G+NY+G E +YSGV G+ +  +IF G V+YQRLR
Sbjct: 969  VKKDSGESDSMSGSIVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLR 1028

Query: 802  HMVSDKWQTK 811
            HMVSDK+Q +
Sbjct: 1029 HMVSDKFQVR 1038


>gi|145343599|ref|XP_001416405.1| DNA-directed RNA polymerase I polypeptide 2 [Ostreococcus
           lucimarinus CCE9901]
 gi|144576630|gb|ABO94698.1| DNA-directed RNA polymerase I polypeptide 2 [Ostreococcus
           lucimarinus CCE9901]
          Length = 1145

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 328/950 (34%), Positives = 473/950 (49%), Gaps = 117/950 (12%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT--LKLNIVKAAISEPKVPAGPVGIH 125
           L A H+ SF+ + + G D  +  + P +F+       L L +    +   K      G  
Sbjct: 39  LFACHVDSFNHLTNLGFDQILRCVKPEKFQQSAGCPELMLWLEDLKLESLKFRHRISGRT 98

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
            ++  P   R+    Y  P +V   W  DG+        +G  P+M+KS  C L  L+PA
Sbjct: 99  ESQKTPRGCREGGESYKAPLSVQFCWQIDGENVQRRVVNLGDCPVMVKSDVCSLALLSPA 158

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           QL+ RGE   E GGYFI+ G E+++R++I  RR+H + + R A+  R  LFS+    IR 
Sbjct: 159 QLVARGEEAHEAGGYFIINGIERMIRMIIQQRRHHILGLCRRAFTKRSPLFSEFATVIRC 218

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKS------------------------MCL---- 277
           V  DE ++   LH++  G+ R    HR+                         +CL    
Sbjct: 219 VTEDEHSSIVRLHYMRTGALRLALQHRRQEFFIPAGIVLRALAVCSDAEMYRQVCLHLRS 278

Query: 278 -----------LGMMQ-SLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLT 325
                      L ++Q   HE  I TQ  +  + GQ F+  L       +++ + +  L 
Sbjct: 279 AGTDETFIEDRLALLQRECHELQIRTQMCALSYLGQHFRTLLDLSSDE-SDISVGERFLE 337

Query: 326 NCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEK 385
           + I  HL    DK   L  M  KL  +V G    D  DS++ QE++  G L LQ + +EK
Sbjct: 338 DFIYVHLQHNGDKLSLLILMLSKLLSIVTGRCSPDDPDSLVNQEVLVPG-LLLQAMIREK 396

Query: 386 ---------------SGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLM 430
                           G+ +    S +     +S +   +  FLATGN+ +   + L L 
Sbjct: 397 VRIAFQKVVTHLRRTQGSWSEETISHLINESGSSDVGKVVEYFLATGNLVS--PTGLGLS 454

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SGF I+AE +N  RY+SHFR+VHRG+YF E+R++  R+L  ++WGF+CPVHTPDG+PC
Sbjct: 455 QTSGFTIVAEKLNYFRYISHFRSVHRGAYFMELRTTTVRKLLPESWGFLCPVHTPDGSPC 514

Query: 491 GLLNHLTTNCQI-----SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM-VMLDG 544
           GLLNHL   C+I           K L QI SVL       L  V Q     A + V+L+G
Sbjct: 515 GLLNHLAEMCEIVMPDTDHVFQQKRLLQIHSVLDR----ALISVEQYDCGYAHVPVVLEG 570

Query: 545 RIVGYILDQIATSLVPKLRMLKI-VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
             VGYI  + A+ ++  LR  K+ +   + +  EI Y+  P    GL+PGLY+F GP R+
Sbjct: 571 SFVGYISAENASHVISALRAFKVTLTTSVLRMSEISYI-HPGGEHGLFPGLYIFYGPSRL 629

Query: 604 LRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
           +RPV  + +  +E+IGT EQ F+ I     E++    TH E+  T  LS +A+L P  D 
Sbjct: 630 MRPVKQVESMKVEFIGTLEQAFLSISAHQVESHNASYTHAEIRNTSALSCVASLTPWSDF 689

Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
           NQSPRNMYQCQM KQTMGTP     Y+   KLYRL TP  P      YD   +D++ +GT
Sbjct: 690 NQSPRNMYQCQMAKQTMGTPMHTICYRSDTKLYRLHTPQRPLALTCTYDKYSLDDYALGT 749

Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
           NA+VAVI+YTGYDMEDAMI+NK S  RGFAH  ++K                T+  G+  
Sbjct: 750 NAVVAVIAYTGYDMEDAMIVNKGSLHRGFAHATLYK----------------TLVEGISA 793

Query: 784 SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD 843
           +   ++                          RD    +   +L   G V +G+ +   D
Sbjct: 794 NETLSR--------------------------RDNTYTSENKQLDGTGSVQLGSIVRPGD 827

Query: 844 PMYS-YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
            + + +  +   +  + R  G +   V+ V ++    +  +     A I  R  RNP +G
Sbjct: 828 TLLNLHSSDGVTKGRSIRLRGTDAAVVDKVVLTQSVKQAATKNDKRAAITLRYDRNPVIG 887

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG+ S  WP ED+PF+D +GL PD++ NPH FPSRMTIG L
Sbjct: 888 DKFSSRHGQKGVLSFLWPEEDMPFSDRTGLRPDVIINPHAFPSRMTIGML 937



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 28/40 (70%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            ESGYN+ G+E + +G  G      IF G+V+YQRLRHMVS
Sbjct: 977  ESGYNFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHMVS 1016


>gi|302903611|ref|XP_003048895.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729829|gb|EEU43182.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1195

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 332/971 (34%), Positives = 500/971 (51%), Gaps = 151/971 (15%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFDFML-DEG----LDLAVEDIAPIEF----EIYG-- 100
           F  PP     +  L L   PHI SF+ +  D+G    L   + DI    F    E  G  
Sbjct: 23  FRNPPKDHTAYPALQLAINPHIESFNGLFRDDGKPGLLTHGLADIGTKTFLDGDERAGPQ 82

Query: 101 --KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               L +      + +P+VP         + +P E R+    Y G  + T+ +  +G   
Sbjct: 83  GKNRLTIRYKDVFLQKPQVPPSNKMARNRQIFPAECRERHVTYRGRLSATLEYRINGGDP 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             F +E G+VPIM+KS RCHL   +PA L+ER E  +E GGYFIV G EK++R+L  N+R
Sbjct: 143 IEFVREFGQVPIMIKSNRCHLEGNSPALLVERKEESEELGGYFIVNGIEKIIRMLQLNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R +++NRG  ++  G+ +R+V+ DE++  NVLH++ +G+  F FS RK+  L+
Sbjct: 203 NFPMAINRPSFQNRGPGYTPYGIILRAVRPDETSQTNVLHYLNDGNMTFRFSWRKNEYLI 262

Query: 279 GMMQSLHE----------EGI------------------------------HTQHDSKVF 298
            +M  L            EG+                              +++ +++ +
Sbjct: 263 PVMMILKALVETNDREIFEGLVGPVGSKSTENTFLTDRIELLLRTYKSYNLYSKSETRAY 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            G+ F+  L      ++ +++    L   +L HL +         +KF  L  M  KL+ 
Sbjct: 323 LGEKFRVVLGVP-DTMSNLDVGTEFLRRIVLVHLGNVDVTEEQDNEKFKLLLFMIRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG----------------------TS 389
           +V G   +D+ D++  QEI+ GG LY Q+LK+                          TS
Sbjct: 382 LVAGECAVDNPDAVQNQEILLGGFLYGQILKERLDEFLSVNVRASLRDYLRRNPTVPFTS 441

Query: 390 AVLKESDIYAAFRAS--SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
              ++      FR +  ++ +A+  FL+TGN+ +   S L L Q +GF ++AE +N +R+
Sbjct: 442 EDFRKDFPNNIFRKANENLGNALEYFLSTGNMQS--PSGLDLQQTAGFTVVAEKLNFLRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG PCGLLNHL   C+I     
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGAPCGLLNHLAHKCKI--MTD 557

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
           S  ++ I ++   LG++ ++    +  E+ ++VMLDG+I+G+   + +  +    R  K+
Sbjct: 558 SVDVSHIAALAAELGIVDVS---SASTEENVVVMLDGKILGFCTPKESVRIADCFRYWKV 614

Query: 568 VG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
            G   +P  LEI Y+  P    G YPG+Y+ + P RM+RPV  L     +W+G +EQ +M
Sbjct: 615 EGTHGVPLQLEIGYV--PPSHGGSYPGIYMTSTPARMVRPVKYLPLQKEDWVGPYEQPYM 672

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
            I +  +E   G +TH E   T+ LS LAN+ P  D NQSPRNMYQCQMGKQTMGTP  N
Sbjct: 673 SIAVVPQEVESGKSTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPSTN 732

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
            RY+   K YR+QT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMILNKS
Sbjct: 733 LRYRTDNKSYRIQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKS 792

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           ++ERGF HG I+K+  I L+       T+++              FG   +      VS 
Sbjct: 793 AHERGFGHGTIYKTKKISLKDDSRTKATKSVTKA-----------FGFAPHS----YVSA 837

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK-- 864
            +Q             L+D    DGL +VG  + E D + ++        VT  Y+GK  
Sbjct: 838 SYQ-----------GMLDD----DGLPHVGRMIQEGDVICAW------HTVTPDYNGKLV 876

Query: 865 --------------EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
                         E   VE VR+     E G+       + +R+ R+P +GDKF+SR G
Sbjct: 877 NLDGITHYEKYKDGETGFVEEVRLIGA--ETGNEPLQTISVKFRVPRSPIIGDKFSSRHG 934

Query: 911 QKGICSVKWPA 921
           QKG+ S KWP 
Sbjct: 935 QKGVASQKWPT 945



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 976  MKAGYNYHGNEPMYSGITGEELAADIYIGVVYYQRLRHMVNDKYQVR 1022


>gi|339257860|ref|XP_003369116.1| DNA-directed RNA polymerase I subunit RPA2 [Trichinella spiralis]
 gi|316966676|gb|EFV51221.1| DNA-directed RNA polymerase I subunit RPA2 [Trichinella spiralis]
          Length = 1177

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 329/948 (34%), Positives = 489/948 (51%), Gaps = 130/948 (13%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           L  PHI SF++  ++G+  AVE+  P             I   AIS+    A  +     
Sbjct: 39  LVEPHIKSFNYFAEQGITQAVEN--PF------------IGFPAISKDGGDANAL----- 79

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
           K +P+E R +   YS     T+    + +   +  + +G +PIML S RCHL  L+P QL
Sbjct: 80  KLWPSECRVSCRSYSAKLLATLTIKINNQVVDSARRNLGDIPIMLMSNRCHLTKLSPNQL 139

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP---------IAIKRNAWKNRGLLFSD 238
           ++  E  +E GGYFIV G EK+VR+LI  RRN+          + + RN   N   +  +
Sbjct: 140 MKEKEEMNEMGGYFIVNGQEKVVRMLIAQRRNYVGSLYFVSLWLLLGRNG-SNVASIIPN 198

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARF-------MFSHRKSM-----------CLLGM 280
           +  +    +    +          G+  +        F + + M           C++ M
Sbjct: 199 MAYHCDVFEIIILSAIISSIICPIGACCYATYDCPDQFLYTELMRSFNEDEFWKGCVVNM 258

Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFL 340
           +  L  E ++++ D+  + G++F+  L   +     +E    ++   +  HL+   +KF 
Sbjct: 259 LMDLKSENLNSKADALSYLGRLFRAALPV-ITSTTNMEAGQILIDRYLCVHLNTDREKFD 317

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS-------------- 386
            L +   KL  + +  +  +S DSI  QE++  G + L +LK+                 
Sbjct: 318 FLIYSAQKLCSLAKEEIVPESPDSIANQEVLLPGMILLLILKERLEIMLTRMCRYIVDSI 377

Query: 387 --GTSAVLKESDIYAAFRASS-IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
              +S   +   I  A + +S +  A+  FL TGN+ +  +      Q SGF I+AE +N
Sbjct: 378 ICDSSHQFQARHITTAVKFTSLVTRALEYFLRTGNLPSNVHHAFS--QQSGFCIIAERLN 435

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            +R++ HFR +HRG++F E+RS++ R+L T+AWGFICPVHTPDG+PCGLLNHL  +C+++
Sbjct: 436 HLRFVGHFRGIHRGAFFSEVRSTDVRKLSTEAWGFICPVHTPDGSPCGLLNHLAASCRVT 495

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPV----IQSIPEQALM-VMLDGRIVGYILDQIATSL 558
               S+ L  +   +   G+L LT      + S  +Q    V++DG ++G I ++     
Sbjct: 496 ATQGSRDL--VIHAISKFGLLSLTASAMLNLDSATDQYYYRVIVDGSVIGVIGEENVQQA 553

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA---GNI 615
           +  LR  K  G  +    EI +  R    M  YPGL++FT  GR +RPV NL+     N 
Sbjct: 554 IQILRKEKSSGVFLSIFTEICFFSRKTFSMH-YPGLFIFTEFGRFMRPVNNLSIEPPSNR 612

Query: 616 EWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
           E+IGT EQ+F+ ICI  ++   G+TTH+E+   + LS  A +IP PD NQSPRN+YQCQM
Sbjct: 613 EYIGTMEQLFLGICIGPEDFEEGVTTHQEIDPANILSFNAKMIPFPDHNQSPRNVYQCQM 672

Query: 676 GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT-- 733
            KQTMGTP  +  ++   K+Y L+TP SP  +   YD   +DN+P+GTNAIVAVISYT  
Sbjct: 673 AKQTMGTPVHSLVHRTDNKMYCLRTPQSPLVKTESYDAYAIDNYPLGTNAIVAVISYTKL 732

Query: 734 ---GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
              GYDMEDAMI+NK+S ERGFAH CI+K+  I L         + +Y G +        
Sbjct: 733 SIQGYDMEDAMIINKASVERGFAHACIYKTERINL--------NDRLYDGRNV------- 777

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS--- 847
                                 +F RDPA+  L   +  DGL  VG   ++ DP+Y+   
Sbjct: 778 ----------------------FFRRDPADATLSAFVDEDGLPQVGKLYSKNDPLYTGQR 815

Query: 848 ---YWKESENRYVTC-RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
               + E  +++  C R   K     +  R    +     V+  C   G    RNP VGD
Sbjct: 816 NWILYGEKISQFRRCIRRQYKNYWQCKWCRTVEAYLR--YVSCYCKIFG-DYHRNPFVGD 872

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KFASR GQKGI S  WPAE++PFT+SG+VPDI+FNPHGFPSRMT+G +
Sbjct: 873 KFASRHGQKGINSFLWPAENMPFTESGMVPDIIFNPHGFPSRMTVGMM 920



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 40/46 (86%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNYYG E MYSG+DG M++  IFFGVV+YQRLRHMVSDK+Q +
Sbjct: 959  KAGYNYYGNERMYSGIDGRMLEVDIFFGVVYYQRLRHMVSDKFQVR 1004


>gi|303274472|ref|XP_003056556.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462640|gb|EEH59932.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1198

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 331/1005 (32%), Positives = 502/1005 (49%), Gaps = 164/1005 (16%)

Query: 61  QNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAG 120
           + + L ++ + H+ASF++ ++ GL   ++ +A +  +  G + + + ++   S   +   
Sbjct: 14  ERDALRSIVSNHVASFNYFVEHGLAEVIKRMASVSVQAPGTSAQSSRIRLWFSGVSMKT- 72

Query: 121 PV----GIHFNK---YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVG--RVPIM 171
           PV    G+   +    +P E R+  S Y  P    + WS  G+AG  +  E+   + P+M
Sbjct: 73  PVRERDGLSLARDPRVFPRECREAGSTYKAPMTANICWSV-GEAGEVYHHELQLCQFPVM 131

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI------- 224
           + S RCHL + + A+LI RGE   E GGYFI+ G+E+++RLLI  RR++ I I       
Sbjct: 132 VSSTRCHLASASRAELINRGEEGREIGGYFILNGNERMIRLLIQQRRHYIIRIHDSVCWI 191

Query: 225 ----------------------KRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTN 262
                                 KR A+ +RG L++     IR V  DE +    LH++T 
Sbjct: 192 SLINEITFYFYFFFECPCSLGLKRAAFTSRGYLYTPFATAIRCVSPDEHSCTVRLHYLTG 251

Query: 263 GSARFMFSHRK------------SMCLLG---------------------------MMQS 283
           GSAR  F HR+            ++C +                            +++ 
Sbjct: 252 GSARLAFIHRRQEYFLPLGLVFIALCEVSDKELQDVVCSGVPGPGAHVFASERVAMVLEE 311

Query: 284 LHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLS 343
           +H  GI T+  +  + G  F+E+L  D    N ++I   ++ + +  HL    DKF  L 
Sbjct: 312 IHTLGIQTRSQALSYLGICFRERLNADSWETN-IDIGKRIIRDHVFIHLATCSDKFNLLV 370

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRA 403
            M  KL+ +V G    D+ DS+M  E++  G L LQ+  +E+   + +  +  I   F  
Sbjct: 371 LMLQKLYALVTGQCSQDNPDSLMHHEVLLPGIL-LQMFMREQLSEALIKVKDTILREFEG 429

Query: 404 SSIESAMTN-----------------------FLATGNVSAGKNSTLQLMQASGFVIMAE 440
                 + +                       FLATGN+ +   + L L Q SGF I+A+
Sbjct: 430 QPQTMDLNDRERILSLVVGSIGRIDLGRMAEYFLATGNLVS--KTGLGLSQTSGFTIVAD 487

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
            +N +RY+SHFR++HRG+Y+ E+R++  R+L  D+WGF+CPVHTPDG+PCGLLNHLT +C
Sbjct: 488 KLNYVRYLSHFRSIHRGAYYAELRTTTVRKLLPDSWGFLCPVHTPDGSPCGLLNHLTASC 547

Query: 501 --QISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSI--PEQALMVMLDGRIVGYILDQIA 555
              IS+     + +A I  +L S+G+L  T  ++S   P   + V LDG +VG++    +
Sbjct: 548 FVHISDGQNRGLEMAAIFRILSSVGVLITTGRLRSTSAPHVLIPVTLDGVMVGFMRAADS 607

Query: 556 TSLVPKLRMLKIVG-EKIPKSLEIVYLKR-PEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
             +V  LR  K+    K+P SLE+VY+     +  G +PGLYLFT   R++RPV  LA+G
Sbjct: 608 AKVVATLRSAKVSEPPKVPPSLEVVYIPTLVNRSGGAFPGLYLFTSSSRLMRPVRQLASG 667

Query: 614 NIEWIGTFEQVFMDICITMKEAYPG-----ITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
            IE I + EQ FM   I   +   G     + TH E +    LS +A+  P  D NQSPR
Sbjct: 668 FIENISSLEQAFMS--IKCPDGSSGGSEELVFTHEESNAKAMLSVIASCTPWSDYNQSPR 725

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           NMYQCQM KQTMG P   + Y+   KLYRLQ+P  P      YD   +D +P+GTNA++A
Sbjct: 726 NMYQCQMAKQTMGLPLHAFCYRPDTKLYRLQSPQRPIAVTESYDEYSIDEYPLGTNAVIA 785

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           V++YTGYDMEDAMI++K S ERGF+H  ++K+  + L +G                    
Sbjct: 786 VLAYTGYDMEDAMIVSKGSMERGFSHATLYKTETLSLVTG-------------------- 825

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANKALEDKLGPDGLVYVGAKLNERDPMYS 847
                                +   FG  D  + +LE  L  DG   VG+ +     + S
Sbjct: 826 ---------------------SGKVFGHFDLRSHSLEGTLNIDGSPSVGSIIEPGSALAS 864

Query: 848 YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFAS 907
                  +    +  G ++  V+ V +       G  +   A +  R  RNP +GDKF+S
Sbjct: 865 VVDRITGQTHVHKAKGTDQAIVDRVSVIQTSLSRGIRSTKMA-LSLRYNRNPIIGDKFSS 923

Query: 908 RAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG+ S  WP E LP+ + +G+ PDI+ NPH FPSRMTIG L
Sbjct: 924 RHGQKGVLSFLWPEESLPYVERTGIRPDIIINPHAFPSRMTIGML 968



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 33/45 (73%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
            GY+Y G+ETM +G+ G      I+ G+V+YQRLRHMVSDK+Q + 
Sbjct: 1013 GYDYCGSETMVNGLTGEAFGVDIYIGLVYYQRLRHMVSDKFQVRS 1057


>gi|449666447|ref|XP_002161911.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Hydra
           magnipapillata]
          Length = 1044

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/697 (39%), Positives = 403/697 (57%), Gaps = 77/697 (11%)

Query: 46  LKNLTDKNF--GKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKT 102
           LK+LT + F  GKP D QN+ L     PHI SF+++L+ GL+ AV+ I P EFE+  G+ 
Sbjct: 7   LKHLTSQEFVAGKPLDNQNKALQEFIQPHIESFNYILENGLNEAVKLIIPQEFELPDGRR 66

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
            +++I+  +I  P V          + YP E R+    Y     VT+ W  +G   G+ T
Sbjct: 67  AEISILDCSIGTPVVDDNNFTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVT 126

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           K + +VP+M+KSK C L NLTPAQLIE+ E  +EWGGYFIV G EK++R+L+  RRN+P+
Sbjct: 127 KSIAQVPVMVKSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRNYPL 186

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
           A+ R +WK+RG LF++ GV IRS+++D+S   NVLH++T+GS    F H+K         
Sbjct: 187 AMVRKSWKSRGPLFTEFGVSIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKEQFFVPLAL 246

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                         ++ M+++L++E + +Q+D   + G  F+ K
Sbjct: 247 ILKALTANSDQYIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQNDVLKYMGMRFRIK 306

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
           +       +E +I  YM   C+L HL+   DKF  L +MT KLF +       +S D+ M
Sbjct: 307 VNLPEWTSDE-DIAKYMFQTCVLVHLEKITDKFNLLIYMTQKLFALANDKCAAESPDNPM 365

Query: 367 LQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
             E++ GG  YL +LK+                          M +FLATGN+ +   S 
Sbjct: 366 NHEVLLGGHTYLLVLKQ--------------------------MESFLATGNILS--KSG 397

Query: 427 LQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
           L LMQA+G  ++A+ +N MRY+SHFR +HRG++F EMR++  R+L  +AWGF+CPVHTPD
Sbjct: 398 LGLMQATGMSVVADKLNFMRYLSHFRCIHRGAFFTEMRTTTVRKLLPEAWGFLCPVHTPD 457

Query: 487 GTPCGLLNHLTTNCQI--SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
           G PCGLLNHL   C++  ++Y  S ++     +LV LGM  L  +   +   +  V+LDG
Sbjct: 458 GAPCGLLNHLAAACKVENTKYPTSDLI----KLLVKLGM-QLCDMDLGLASDSYSVLLDG 512

Query: 545 RIVGYILDQIATSLVPKLRMLKIV-GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
            +VG +   I+  +  KLR+ K +  E +P ++EI+++ R  K    Y G++LFT   RM
Sbjct: 513 CVVGRLRSHISEEVCKKLRVFKALQKEMVPPTMEIIFIPRT-KFASQYEGIFLFTDVARM 571

Query: 604 LRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
           +RPV NL    +E+IG+FEQV+MDI +   E +   TTH EL+    LS LA L P  D 
Sbjct: 572 IRPVRNLLTNTVEYIGSFEQVYMDIAVYSDEIHAPTTTHMELNDCAMLSELATLTPYSDF 631

Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           NQSPRNMYQCQMGKQTMGTPC   +++   K+Y++Q 
Sbjct: 632 NQSPRNMYQCQMGKQTMGTPCQALKHRSDNKMYKIQV 668



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 87/139 (62%), Gaps = 3/139 (2%)

Query: 814 FGRDPANKALEDKL-GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVV 872
           FG D  +   +  L G DGL  +G  +   DP YSY+      Y T +Y   E   ++ +
Sbjct: 699 FGSDEESSTFKSGLLGKDGLPPIGRFMQHGDPYYSYYHIINGEYKTVKYKHMEPAYIDDI 758

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
           ++    ++ G        I  RIQRNP +GDKFASR GQKGI SVKWPAE++PFT+SG++
Sbjct: 759 KILG--SDKGDRELLKVSIKLRIQRNPIIGDKFASRHGQKGILSVKWPAENMPFTESGMI 816

Query: 933 PDIVFNPHGFPSRMTIGFL 951
           PDI+FNPHGFPSRMTIG +
Sbjct: 817 PDIIFNPHGFPSRMTIGMM 835



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 39/49 (79%)

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           I +++GYNYYG E MYSG++G  M   IF G+V+YQRLRHMV+DK+Q +
Sbjct: 871 ILVKAGYNYYGNERMYSGINGKEMDVDIFIGIVYYQRLRHMVADKYQVR 919


>gi|358334878|dbj|GAA28300.2| DNA-directed RNA polymerase I subunit RPA2 [Clonorchis sinensis]
          Length = 1153

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 317/903 (35%), Positives = 471/903 (52%), Gaps = 127/903 (14%)

Query: 133 EARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGE 192
           + R+  + Y     + V  S +G A        G VPIM+ S+ C+L  L  A+  +  E
Sbjct: 2   KCRRQGTTYGATLRLNVRLSINGTAASVLEIPCGEVPIMVLSRACNLSKLNRAEFPKHLE 61

Query: 193 HPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESA 252
              E GGYFIV G E+++RLLI  RRN P+AI R ++K RG  +S+  + +R V+ DE+ 
Sbjct: 62  EEREIGGYFIVNGKERVLRLLIMTRRNFPLAISRPSFKRRGTGYSEFAIIMRCVREDEAV 121

Query: 253 TNNVLHFVTNGSARFMFSHRK-------SMCLLGMMQS---------------------- 283
           +  +LH++ NG     F   +       S+ L  M+                        
Sbjct: 122 STMMLHWLMNGEPVLAFIVEREQFFVPISILLRAMVNKTEFEMFDDIRRGSGESLSLEET 181

Query: 284 -------LHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW 336
                  L +E   +Q  +  + G++F+ +++      +E +   +++   I  HLD + 
Sbjct: 182 AMRILVRLKDEDYSSQTRALSYMGRLFRGRMRLPTSATDE-DAGIFLIRRYIGIHLDSFV 240

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK-------------- 382
           DK+  L  M  KL   V G    ++ D++M QE++   +LYLQ+L+              
Sbjct: 241 DKYHLLCFMIRKLHAFVSGQCCEETNDNLMFQEVLLPSTLYLQVLREKIRQLLDNTKDHI 300

Query: 383 -----KEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLM---QASG 434
                K K   ++ L +  + +  RA  I SAMT  L+TGN+     S L      QASG
Sbjct: 301 LARSRKNKVKINSTLLQQSLLS--RAPEIGSAMTYLLSTGNLPPTLRSDLAAQFGGQASG 358

Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
             + A+N+N +R  + FRAVHRG+ F ++R++  R+L  +AWGFICPVHTPDG PCGLLN
Sbjct: 359 LSVPADNVNFLRLAAQFRAVHRGAMFTDIRTTSVRRLLPEAWGFICPVHTPDGAPCGLLN 418

Query: 495 HLT----TNCQISEYIPSKVLA------QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
           HL       C+  ++  +  LA      ++ SV +S  +  +T    ++P     V+LDG
Sbjct: 419 HLAEPVEAVCETPKHSTNDALAAWLTSNKLRSVELSRQLSGVTEAQNALP-----VLLDG 473

Query: 545 RIVGYILDQI-ATSLVPKLRMLKI--VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           R+VG++   I A  L  +LR LK+    + +P SLEI  +   + G   YPGL+LFTG  
Sbjct: 474 RLVGWLSSLIEAEQLADELRDLKLDTQSKHVPYSLEIALVPPTDVG-SQYPGLFLFTGGS 532

Query: 602 RMLRPVMNLAAGN-------IEWIGTFEQVFMDICIT---MKEAYPGITTHRELSKTDFL 651
           R+LRPV N+  GN       +EWIGTFEQ ++DI +T   ++E   G  +H EL+     
Sbjct: 533 RLLRPVKNVRHGNQPEAGGLVEWIGTFEQPYLDIAVTQEELQERPEGAQSHMELTPEGIF 592

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
           S +A L P  D NQSPRNMYQCQM KQTMG  C  WR++   K YRL TP SP  R   Y
Sbjct: 593 SFVAGLTPYQDFNQSPRNMYQCQMAKQTMGHSCYTWRHRSDVKAYRLLTPQSPLVRTKTY 652

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
              D+D++P+G NAIVAV+SYTGYDMEDAM++NK SYERG A  CI+KS  ++L      
Sbjct: 653 VKYDIDHYPLGFNAIVAVMSYTGYDMEDAMVINKGSYERGLAGACIYKSEVLDL------ 706

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
                       S++  Q       + R + + ++      YFG           L  DG
Sbjct: 707 ------------SVLNKQAISKSQGFARRKTVAAEH-----YFG---TPNQPPPGLDLDG 746

Query: 832 LVYVGAKLNER-DPMYSYWKESENRYVTCRYSGKEEMC-VEVVRMSSGFTEGGSVTPNCA 889
              VG +L      +Y Y           +Y G E++  V+ + ++  ++         A
Sbjct: 747 FPPVGTRLEPGVSALYCYTHVETQHTTIVKYEGGEQIAYVDAISLNGSWSH--------A 798

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT-DSGLVPDIVFNPHGFPSRMTI 948
            I  R+ R P +GDK++SR GQKGI S+  P++++P++  SG+VPD++FNPHGFP+RMT+
Sbjct: 799 TITLRLPRPPDIGDKYSSRHGQKGINSLLVPSDEMPWSVTSGVVPDLIFNPHGFPTRMTM 858

Query: 949 GFL 951
           G +
Sbjct: 859 GMM 861



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           + G+NY+GTE M SG +G  ++A I+ GVV+YQRLRHMV+DK+Q +     DP
Sbjct: 900 DCGFNYWGTEMMMSGCNGRQLEAHIYIGVVYYQRLRHMVADKYQVRSQGRFDP 952


>gi|294876076|ref|XP_002767539.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Perkinsus marinus ATCC 50983]
 gi|239869199|gb|EER00257.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Perkinsus marinus ATCC 50983]
          Length = 1255

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 348/1035 (33%), Positives = 507/1035 (48%), Gaps = 181/1035 (17%)

Query: 53   NFGKPPDKQNEFLLTLGA-PHIASFDFML---------DEGLDLAVEDIAPIEFEIY-GK 101
             F  P D     LL     PH+ SF+  +         +E L L  +DI+P E   + G 
Sbjct: 30   QFNAPVDAWGARLLNDSVKPHVDSFNLFVITGLTPEATNEILGLLPDDISPAEMTWHDGT 89

Query: 102  TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW-DGKAGGT 160
            T++  +   ++ +P        +   +  PT  RQ    YSG  + TV  S   G+    
Sbjct: 90   TVRCWLSDLSLHQP---IRGEDVLDPRLLPTHCRQAHITYSGELSATVNVSLGTGEPPVQ 146

Query: 161  FTK-EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
              +  +G VPIM++S+ CHL  + P+++++ GE PDE GGYFIV G+EK++RLLI  + N
Sbjct: 147  MARVPLGLVPIMVRSEACHLHGMPPSKMVQCGEDPDERGGYFIVNGNEKVIRLLIMPKSN 206

Query: 220  HPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS----- 274
             P+A+ R ++ NRG L+S   V +RS++ D +     +H+  +G+    F++ K+     
Sbjct: 207  FPVALYRPSFSNRGPLYSAYAVQMRSMRPDLTTQTVTMHYRKDGTCWVRFTYLKNEYLIP 266

Query: 275  -------------------------------------MCLLGMMQSLHE-EGIHTQHDSK 296
                                                  C+L  M++  E + +H++ D+ 
Sbjct: 267  LMLLLKCLAPDELNSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDAL 326

Query: 297  VFFGQ----IFKEK-----------LQYDLRHLNEVE----ICDYMLTNCILPHLDDYWD 337
             + G     +F+EK           L+ D   ++ VE    +   +L + +L H     +
Sbjct: 327  YYLGSKFEVVFREKRGAGVSLDGIALEVDDAAMSPVEKSVSVARRLLDSLMLVHCPKGAE 386

Query: 338  ----KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------EKS 386
                K  CL  +  KL  +V+G +  D+ D++ +QE++  G L+  LLK+          
Sbjct: 387  GGKAKVDCLVLIFRKLMALVRGDIAPDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLE 446

Query: 387  GTSAVLKESDIYAAFRASSIESA----------------MTNFLATGNVSAGKNSTLQLM 430
            G  A           RA ++ SA                M +FLATGN+++   S L L 
Sbjct: 447  GALAKKSRQAQVGKGRAPTVLSAELIRNTFMGVCDVTKRMESFLATGNITS--RSGLDLQ 504

Query: 431  QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
            Q +GF ++A+ +N  RY+SHFRAVHRGS+FQEM+++  R+L  + WGF+CPVHTPDGTPC
Sbjct: 505  QTTGFTVVADKLNAYRYLSHFRAVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPC 564

Query: 491  GLLNHLTTNCQISEYI--PSKVLAQIPSVLVSLGMLPLTPVIQSIPE----QALMVMLDG 544
            GLLNHL   CQ    I  P  V+  +   L SLG+  +     S       +   V LDG
Sbjct: 565  GLLNHLAAPCQPVVRIASPEGVIPGLEEELASLGVQLVRSSKTSTANYGAGENAYVTLDG 624

Query: 545  RIVGYILDQIATSLVPKLRMLKIVGE--KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGR 602
            R++G +      ++  +LR LKI  +   +P  LEIV  + P      + GL+LFTGP R
Sbjct: 625  RVLGKVARSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPAS----FEGLWLFTGPCR 680

Query: 603  MLRPVMNLAAGNIEWIGTFEQVFMDICIT------------MKEAYPGITTHRELSKTDF 650
            M+RPV +LA GN E +G  EQVF+ I  T            + E  P   TH ELS    
Sbjct: 681  MVRPVRDLATGNEELVGPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISM 740

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            LS +A L P  + NQSPRNMYQCQM KQTM  P LN  Y+   K+Y++  P  P  R   
Sbjct: 741  LSVIAGLTPFSNHNQSPRNMYQCQMLKQTMAIPYLNHPYRTDNKVYKITYPQFPMVRTTV 800

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
                + D  P GTNAIVAVI+++G+DMEDA+I++K SY+RGF HG ++K+  I       
Sbjct: 801  LSEANFDVKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKTKVINCPP--- 857

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                     G  GS              RL    +D    K         K ++D L  D
Sbjct: 858  --------KGTVGS--------------RLAQFRADNHSVK-------GEKVVKD-LDYD 887

Query: 831  GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM--------------SS 876
            G+ Y+G +++E DP+     +        +Y   E   VE V M              + 
Sbjct: 888  GIPYIGQQVHEGDPICRVLNKGTGEAKLEKYKEGEVAWVEQVNMIGGGGWWGGGAGARNP 947

Query: 877  GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
            G  + GS       I  R+ RNP VGDKF+SR GQKG+ ++ WP  D+PF+ SG+ PDI+
Sbjct: 948  GGIKDGS---ERMSIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMPFSTSGISPDIM 1004

Query: 937  FNPHGFPSRMTIGFL 951
            FNPHG PSRMTIG L
Sbjct: 1005 FNPHGMPSRMTIGML 1019



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GY Y G E +YSG+ G  ++  I+ GVV+YQRLRHMV DK+Q +     DP  +      
Sbjct: 1080 GYEYLGAEELYSGMHGEPLKTHIYMGVVYYQRLRHMVLDKFQVRATGPIDPLTRQPVKGR 1139

Query: 828  GPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVE 870
               G V  G    ERD + S+   +   +R + C  + ++ +C E
Sbjct: 1140 KKHGGVRFGEM--ERDSLISHGTSALLADRLLKCSDACEDWVCPE 1182


>gi|46122499|ref|XP_385803.1| hypothetical protein FG05627.1 [Gibberella zeae PH-1]
          Length = 1201

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 328/981 (33%), Positives = 502/981 (51%), Gaps = 158/981 (16%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFDFML-DEG----LDLAVEDIAPIEF-------EIY 99
           F  PP   + +  L L   PHI SF+ +  D+G    L  A+ DI    F          
Sbjct: 23  FRNPPTDHSAYPALQLAVNPHIESFNAIFRDDGKPGLLTHAIADIGTRTFLDGDDRAPSD 82

Query: 100 GKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
           GK  L +      + +P+VP         + +P E R+    Y G  + T+ +  +G   
Sbjct: 83  GKNILTVRYKDVFLQKPQVPPSNKLARNRQVFPAECRERHVTYRGRLSATLEYRINGGDP 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             FT+E G+VP+M+KS RCHL   +PA L+ER E  +E GGYF+V G EK++R+L  N+R
Sbjct: 143 VEFTREFGQVPVMIKSNRCHLEGNSPALLVERKEESEELGGYFVVNGIEKIIRMLQLNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R +++NRG  ++  G+ +R+V+ DE++  NVLH++ +G+  F FS RK+  L+
Sbjct: 203 NFPMAINRPSFQNRGPGYTPYGIILRAVRPDETSQTNVLHYLNDGNMTFRFSWRKNEYLV 262

Query: 279 GMMQSLHE----------EGI------------------------------HTQHDSKVF 298
            +M  L            EG+                              +++ D++ F
Sbjct: 263 PVMMILKALVETNDREIFEGLVGPAGSKAAGNTFLTDRIELLLRTYKSYNLYSKSDTRAF 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            G+ F+  L       N  E+    L   +L HL +         +K+  +  M  KL+ 
Sbjct: 323 LGEKFRVVLGVPDTMTN-YEVGTEFLRKIVLVHLGNVDVTEEQDNEKYKLILFMIRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRAS------- 404
           +V G   +D+ D++  QEI+ GG LY Q+LK+      +V     +   FR +       
Sbjct: 382 LVAGECAVDNPDAVQNQEILLGGFLYGQILKERFDEFLSVNVRGSMRDYFRRNPGIPFTS 441

Query: 405 -----------------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
                            ++ +A+  F++TGN+ +   S L L Q +GF ++AE +N  R+
Sbjct: 442 EEFRKEFPNNIFRKANENLGNALEYFMSTGNLQS--QSGLDLQQTAGFTVVAEKLNFTRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYI 506
           +SHFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C I+ +Y+
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHLARKCSITTDYL 559

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++ I ++   LG++ ++    +  ++ ++VM+DG+I+GY   + +  +    R  K
Sbjct: 560 D---VSHIATLAAELGVVDVS---SASTDENVVVMMDGKILGYCTPKESVRIADCFRYWK 613

Query: 567 IVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LEI Y+  P +G G YPG+YL + P RM+RPV  L     +W+G +EQ +
Sbjct: 614 VEGTHGVPLQLEIGYVP-PSRG-GSYPGVYLTSTPARMVRPVKYLPLQKEDWVGPYEQPY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G +TH E   T+ LS LAN+ P  D NQSP     CQM KQTMGTP  
Sbjct: 672 MSIAVVPQEIESGKSTHVEFDPTNILSILANMTPFSDFNQSP-----CQMAKQTMGTPGT 726

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              Y+   K Y++QT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMILNK
Sbjct: 727 ASVYRTDNKSYQIQTGQTPIVRAPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNK 786

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGF HG I+K+  I L+       T+++     G    + +     H+Q +     
Sbjct: 787 SAHERGFGHGTIYKTKKISLKDDSRTKATKSVTKAF-GFAPHSHV---SAHHQGM----- 837

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK- 864
                                L  DGL +VG  + E D + ++        VT  Y+GK 
Sbjct: 838 ---------------------LDDDGLPHVGRLIQEGDVICAW------HTVTPDYNGKL 870

Query: 865 ---------------EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
                          EE  +E VR+     E G+       I +RI R+P VGDKF+SR 
Sbjct: 871 VNLDGITHYEKYKDSEEGFIETVRLIGA--ESGNEPLQTVSIKFRIPRSPIVGDKFSSRH 928

Query: 910 GQKGICSVKWPAEDLPFTDSG 930
           GQKG+ S KWP  DLPF+++ 
Sbjct: 929 GQKGVASQKWPTMDLPFSETA 949



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  +QA I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 982  MKAGYNYHGNEPMYSGITGEELQADIYIGVVYYQRLRHMVNDKYQVR 1028


>gi|408394393|gb|EKJ73601.1| hypothetical protein FPSE_06219 [Fusarium pseudograminearum CS3096]
          Length = 1200

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 327/970 (33%), Positives = 499/970 (51%), Gaps = 153/970 (15%)

Query: 54  FGKPPDKQNEF-LLTLGA-PHIASFDFML-DEG----LDLAVEDIAPIEF-------EIY 99
           F  PP   + +  L L   PHI SF+ +  D+G    L  A+ DI    F          
Sbjct: 23  FRNPPTDHSAYPALQLAVNPHIESFNAIFRDDGKPGLLTHAIADIGTRTFLDGDDRAPSD 82

Query: 100 GKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
           GK  L +      + +P+VP         + +P E R+    Y G  + T+ +  +G   
Sbjct: 83  GKNILTVRYKDVFLQKPQVPPSNKLARNRQVFPAECRERHVTYRGRLSATLEYRINGGDP 142

Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
             FT+E G+VP+M+KS RCHL   +PA L+ER E  +E GGYF+V G EK++RLL  N+R
Sbjct: 143 VEFTREFGQVPVMIKSNRCHLEGNSPALLVERKEESEELGGYFVVNGIEKIIRLLQLNKR 202

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
           N P+AI R +++NRG  ++  G+ +R+V+ DE++  NVLH++ +G+  F FS RK+  L+
Sbjct: 203 NFPMAINRPSFQNRGPGYTPYGIILRAVRPDETSQTNVLHYLNDGNMTFRFSWRKNEYLV 262

Query: 279 GMMQSLHE----------EGI------------------------------HTQHDSKVF 298
            +M  L            EG+                              +++ D++ F
Sbjct: 263 PVMMILKALVETNDREIFEGLVGPAGSKAAGNTFLTDRIELLLRTYKSYNLYSKSDTRAF 322

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKLFH 351
            G+ F+  L       N  E+    L   +L HL +         +K+  +  M  KL+ 
Sbjct: 323 LGEKFRVVLGVPDTMAN-YEVGTEFLRKIVLVHLGNVDVTEEQDNEKYKLILFMIRKLYA 381

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRAS------- 404
           +V G   +D+ D++  QEI+ GG LY Q+LK+      +V     +   FR +       
Sbjct: 382 LVAGECAVDNPDAVQNQEILLGGFLYGQILKERFDEFLSVNVRGSMRDYFRRNPGIPFTS 441

Query: 405 -----------------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
                            ++ +A+  F++TGN+ +   S L L Q +GF ++AE +N  R+
Sbjct: 442 EEFRKEFPNNIFRKANENLGNALEYFMSTGNLQS--QSGLDLQQTAGFTVVAEKLNFTRF 499

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYI 506
           +SHFR VHRG++F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL   C I+ +Y+
Sbjct: 500 ISHFRMVHRGAFFAQLKTTAVRKLLPESWGFMCPVHTPDGSPCGLLNHLARKCSITTDYL 559

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
               ++ I ++   LG++ ++    +  ++ ++VM+DG+I+GY   + +  +    R  K
Sbjct: 560 D---VSHIATLAAELGVVDVS---SASTDENVVVMMDGKILGYCTPKESVRIADCFRYWK 613

Query: 567 IVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           + G   +P  LEI Y+  P +G G YPG+YL + P RM+RPV  L     +W+G +EQ +
Sbjct: 614 VEGTHGVPLQLEIGYVP-PSRG-GSYPGVYLTSTPARMVRPVKYLPLQKEDWVGPYEQPY 671

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M I +  +E   G +TH E   T+ LS LAN+ P  D NQSPRNMYQCQM KQTMGTP  
Sbjct: 672 MSIAVVPQEIESGKSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMSKQTMGTPGT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
              Y+   K Y++QT  +P  R   ++T   DNFP G NA+VAVISYTGYDM+DAMILNK
Sbjct: 732 ASVYRTDNKSYQIQTGQTPIVRAPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNK 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S++ERGF HG I+K+  I L+       T+++     G    + +     H+Q +     
Sbjct: 792 SAHERGFGHGTIYKTKKISLKDDSRTKATKSVTKAF-GFAPHSHV---SAHHQGM----- 842

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK- 864
                                L  DGL +VG  + E D + ++        VT  Y+GK 
Sbjct: 843 ---------------------LDDDGLPHVGRLIQEGDVVCAW------HTVTPDYNGKL 875

Query: 865 ---------------EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
                          E+  +E VR+     E G+       I +RI R+P VGDKF+SR 
Sbjct: 876 VNLDGITHYEKYKDSEDGFIETVRLIGA--ESGNEPLQTVSIKFRIPRSPIVGDKFSSRH 933

Query: 910 GQKGICSVKW 919
           GQKG+ S K+
Sbjct: 934 GQKGVASQKF 943



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 39/47 (82%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNY+G E MYSG+ G  +QA I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 981  MKAGYNYHGNEPMYSGITGEELQADIYIGVVYYQRLRHMVNDKYQVR 1027


>gi|452825715|gb|EME32710.1| DNA-directed RNA polymerase subunit isoform 1 [Galdieria sulphuraria]
          Length = 1206

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 326/944 (34%), Positives = 488/944 (51%), Gaps = 148/944 (15%)

Query: 103  LKLNIVKAAISEP-KVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
            +++++    + +P + P     +H +K  P   R+ ++ Y  P  +T+    DGK     
Sbjct: 132  VEIDVANIEVRKPSQYPKARRSVH-DKLLPRHCRENQTSYKAPLFLTLRCKIDGKVCHQL 190

Query: 162  TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
             + VG +P+M++S  CHL  +   +L + GE   E GGYFI  G EK++R++I +RRNH 
Sbjct: 191  VRLVGEIPVMVRSAVCHLSKMDSGELRKLGEEEFETGGYFICNGVEKVLRMIIVSRRNHI 250

Query: 222  IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS--ARFMFSHRKSMC-LL 278
            +AIKR++  NRG LFS    YIR V+ D+++    LH++T+G+  AR   S ++ M  +L
Sbjct: 251  MAIKRDSNSNRGPLFSSFSCYIRCVRPDQTSKTFHLHYLTSGAIQARISISKQEYMIPVL 310

Query: 279  GMMQSL----------------HEEGIH------------------TQHDSKVFFGQIFK 304
             + ++L                +E  I+                  T      + G+ F+
Sbjct: 311  LIFKALIPEITDRTIYEVIMQGNENDIYLRDRVIAMLMDGLSKYEGTAGSELAYLGRTFR 370

Query: 305  EKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTCKLFHVVQGMV 357
              L      + + ++    L + +L HL       DD   K   L+ M  KL  V +G +
Sbjct: 371  IALSIFDDQVTDEQVGRQFLKHFVLIHLSGDKYTDDDNVAKLEMLALMIRKLIAVARGSI 430

Query: 358  QLDSEDSIMLQEIMTGGSLYLQLLKKEKSG-----TSAVLKESDIYAAFRAS-------- 404
              DS DS+  QE++  G LY+  LK++         S +LK+ ++  A            
Sbjct: 431  CPDSPDSLAHQEVLLPGHLYMMYLKEKIEDYLLGIRSVILKDFNMKKAIHLEEGPYFATC 490

Query: 405  ------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
                   I   M +F+ATG +     + L LMQ +G+ ++AE I+  RY+SHFR VHRG 
Sbjct: 491  LQRCPIDIGKRMEHFIATGQLQT--RTGLDLMQTAGYSVVAERISYYRYISHFRCVHRGQ 548

Query: 459  YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP--S 516
            +F E++++  R+L  +AWGF+CPVHTPDG PCGLLNHL     +S+   S+ +A  P  S
Sbjct: 549  FFSELKTTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAHPVIVSQ---SEEMATEPLLS 605

Query: 517  VLVSLGMLPLTPVIQSIP---EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-- 571
             LV  GM  L+    S+         V+LDG+I+GY+   I  ++  ++R+LK+  E   
Sbjct: 606  WLVEHGMT-LSNKYSSLEMPNAWEYPVVLDGKILGYLSVDIMMNISQQMRILKVNNEMNI 664

Query: 572  IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--IEWIGTFEQVFMDIC 629
            +PK+ EIV + R       +PGL++FTGP R+LRPV  L + +   E+IG  EQ F+ I 
Sbjct: 665  LPKTAEIVTVVRQTWNDRNFPGLFIFTGPARLLRPVWLLLSKSPKQEYIGPLEQAFLRIA 724

Query: 630  -----------ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
                       +   E+     TH E+    FLS +A+L P  D NQSPRNMYQCQM KQ
Sbjct: 725  NPKVVSLDWKNMKKDESVFVPATHEEIDCLSFLSLVASLTPFSDMNQSPRNMYQCQMSKQ 784

Query: 679  TMGTPCLNWRYQGVGKLYRLQTPASPFFR--PVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
            ++GTP   +  +   K+YRL TP  P  R  P   D+ +MD+FP G NA+VAV+SYTGYD
Sbjct: 785  SLGTPYHLFERRSDSKMYRLVTPQIPIVRNFPTQ-DSFEMDHFPNGFNAVVAVLSYTGYD 843

Query: 737  MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
            MEDAM++NK+S +RG AHG ++ +  I+L+      GT++ Y G  GS            
Sbjct: 844  MEDAMVINKASLDRGLAHGTMYSTQLIDLD---QMRGTKSKYIG-GGSQ----------- 888

Query: 797  YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE----- 851
                                        + +G DGL  VG ++ + DP+Y    E     
Sbjct: 889  ---------------------------HETIGEDGLPEVGVRVFKGDPLYCIADETVYSL 921

Query: 852  ----SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFAS 907
                SE  Y    +   +   V+ VR+    +   +     A I  R  R P +GDKFAS
Sbjct: 922  ASGTSEKVYF---HKQADPAIVDQVRLIPVTSRASAEGIRRASIKLRYPRIPVIGDKFAS 978

Query: 908  RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R GQKG+ S  WP+ED+PFT++G+VPDI+FNP+GFPSRMTIG +
Sbjct: 979  RHGQKGVLSALWPSEDMPFTENGIVPDIIFNPNGFPSRMTIGMM 1022



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++G+N+YG E MYSG  G   Q  IF GV+HYQRLRHMVSDK+Q +
Sbjct: 1061 KAGFNFYGNEVMYSGYTGEPFQVDIFIGVIHYQRLRHMVSDKFQVR 1106


>gi|10434547|dbj|BAB14296.1| unnamed protein product [Homo sapiens]
          Length = 714

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 260/541 (48%), Positives = 343/541 (63%), Gaps = 46/541 (8%)

Query: 413 FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLR 472
             ATGN+ +   + L L+Q SG  ++A+ +N +RY+SHFR VHRG+ F +MR++  R+L 
Sbjct: 12  LFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLL 69

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQ 531
            ++WGF+CPVHTPDG PCGL+NHLT  C++ ++++ +   A IP++L +LG+ P+     
Sbjct: 70  PESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVTPIDGAPH 126

Query: 532 SIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGL 590
               +   V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +    K   L
Sbjct: 127 RSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SL 185

Query: 591 YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
           YPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+EL     
Sbjct: 186 YPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSL 245

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  
Sbjct: 246 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 305

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
           YD  DMDN+P+GTNAIVAV SYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L     
Sbjct: 306 YDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL----- 360

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
              +E +  G D S++                           FG  P +  +  KL  D
Sbjct: 361 ---SEKIKQG-DSSLV---------------------------FGIKPGDPRVLQKLDDD 389

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
           GL ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     C  
Sbjct: 390 GLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVC 447

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
           I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG 
Sbjct: 448 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGM 507

Query: 951 L 951
           L
Sbjct: 508 L 508



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD         
Sbjct: 548 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 607

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
               G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 608 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 661


>gi|341899204|gb|EGT55139.1| hypothetical protein CAEBREN_31579 [Caenorhabditis brenneri]
          Length = 1052

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 274/702 (39%), Positives = 392/702 (55%), Gaps = 70/702 (9%)

Query: 274 SMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-NEVEICDYMLTNCILPHL 332
           S C+L M+    EEGI  Q  +    G  F+  +   +    +++E   +++  C+L HL
Sbjct: 173 SSCILNMLAQCQEEGILNQQSALRAIGSRFRVAISDRVAPWEDDLEAGRFIIRECVLIHL 232

Query: 333 DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-------- 384
           +   +KF  L++M  KL  +V+G    ++ D+   QE    G + L +L++         
Sbjct: 233 NSDEEKFFTLAYMAQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMV 292

Query: 385 -------KSGTSAVLKESDIYAAF---RASSIESAMTNFLATGNVSAGKNSTLQLMQASG 434
                   +    +L  + I  A        I   M  FLATGN+       L L Q SG
Sbjct: 293 RRKLEFMSAKNDFILTSAAIIKALGNHNGGEITRGMAYFLATGNLVT--RVGLALQQESG 350

Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
           F ++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG PCGLLN
Sbjct: 351 FSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLN 410

Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM-VMLDGRIVGYILDQ 553
           H+T +C+I  ++     + +P++L  LGM     V  + P + L  V++DGR +GY+   
Sbjct: 411 HVTASCRIVTHLTDN--SNVPAMLAELGMYTQKTVTLAPPGEELYPVLMDGRFIGYVPIA 468

Query: 554 IATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGL---YPGLYLFTGPGRMLRPVMN 609
            A S+   LR  K+  + +IP + EI  ++R      +   YPG+Y+ + PGR++RPV N
Sbjct: 469 KAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQTQYPGIYILSDPGRLIRPVRN 528

Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
           LA   +E IGTFEQV++ + I  +EA PG+T H+EL  +   S   NLIP PD NQSPRN
Sbjct: 529 LAMDTVEQIGTFEQVYLSVVIDPEEAEPGVTMHQELHPSCLFSFAGNLIPFPDHNQSPRN 588

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
           +YQCQMGKQTMGT   +W  +   K+YRLQ P  P  +   Y+  +MD +P+GTNA VAV
Sbjct: 589 VYQCQMGKQTMGTAVHSWHSRADNKMYRLQFPQQPLLKLEAYEKYEMDEYPLGTNACVAV 648

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
           ISYTGYDMEDAM +NK+SY+RGFAHG + K   I L                        
Sbjct: 649 ISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINL------------------------ 684

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW 849
                         V+++ + K  F ++P  +     +G DGL   G +    +  Y  +
Sbjct: 685 --------------VTER-EKKTIFYKNPREEI--KTVGSDGLPIPGRRYFLDEVYYVTY 727

Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
                 + T ++   E     +VR+     EG S     A I +RI+RNP +GDKFASR 
Sbjct: 728 NVETGDFKTHKFHYAEPAYCGLVRIVEQ-GEGSSNGSQHALIQWRIERNPIIGDKFASRH 786

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKGI S  WP E LPF+++G+VPDI+FNPHGFPSRMTIG +
Sbjct: 787 GQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMM 828



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 42/53 (79%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           ++GYNYYG ET YSGVDG  M+ QIFFG+V+YQRLRHM++DK+Q +     DP
Sbjct: 867 KAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDP 919


>gi|79356046|ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana]
 gi|332193031|gb|AEE31152.1| nuclear RNA polymerase A2 [Arabidopsis thaliana]
          Length = 1178

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 332/1008 (32%), Positives = 496/1008 (49%), Gaps = 152/1008 (15%)

Query: 34  MILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAP 93
           M++N    + P++++  +             L  L   HI SFD+M  +GLD+    I P
Sbjct: 1   MVVNAKDSTVPTMEDFKE-------------LHNLVTHHIESFDYMTLKGLDVMFNRIKP 47

Query: 94  IEFEIYGKTLKLNI--VKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAW 151
           +         +L+I      +  P+  +           P E RQ +  Y+G F   V +
Sbjct: 48  VSVYDPNTENELSIWLENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCF 107

Query: 152 SWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVR 211
            ++         + G+ PIML SK C L+     +L++  E   E GGYFI+ G E++ R
Sbjct: 108 KYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFR 167

Query: 212 LLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR--FMF 269
            +I  +RNHP ++ RN++++R   +S   V  R V+ D+S+    L+++ NGSAR  F  
Sbjct: 168 CVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWI 227

Query: 270 SHRKSMCLLGMM-----QSLHEE------------------------------------- 287
             R+ +  +G++      S  EE                                     
Sbjct: 228 VGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVR 287

Query: 288 --GIHTQHDSKVFFGQIFKEKL----QYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLC 341
             G+ T+   +   GQ F+  L    +  L  + E  + DY+       HLD+  DKF  
Sbjct: 288 DLGLFTREQCRKHLGQHFQPVLDGVKKESLSIVAEAVLRDYLFV-----HLDNDHDKFNL 342

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---SLYL-----QLLKKEKSGTSAVLK 393
           L  +  KL+ +V      D+ DS+  QEI+  G   ++YL     + L+K KS     L 
Sbjct: 343 LIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELD 402

Query: 394 ESDIYAAFRA-------------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
            ++   +F +              SI +++   L TG +     S L L Q +G+ + AE
Sbjct: 403 NTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKT--QSGLDLQQRAGYTVQAE 460

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
            +N +R++S FRAVHRG+ F  +R++  R+L  ++WGF+CPVHTPDGTPCGLLNH+T   
Sbjct: 461 RLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTS 520

Query: 501 QISEYIPSK--------VLAQIPSVLVSLGMLPLTP-VIQSIPEQALMVMLDGRIVGYIL 551
           +I+    SK        +   +  VL   GM+P  P ++++ P + + V+LDG++VG + 
Sbjct: 521 RITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLS 580

Query: 552 DQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
             + T +V  +R LK+     IP+ LE+ Y+  P    G YPGLYL + P R +RPV N+
Sbjct: 581 SNLVTKVVSYIRRLKVEAPSVIPEDLEVGYV--PTSMGGSYPGLYLASCPARFIRPVKNI 638

Query: 611 A--AGNIEWIGTFEQVFMDICI----TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
           +  + NIE IG FEQVFM+I              + TH E+  T  +S +ANL P  D N
Sbjct: 639 SIPSDNIELIGPFEQVFMEISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHN 698

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRNMYQCQM KQTM       +++   K+Y LQTP SP  R   Y T  +D  P GTN
Sbjct: 699 QSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTN 758

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           AIVAV+++TG+DMEDAMILNKSS ERG  HG I+++  I+L    + + +          
Sbjct: 759 AIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDS---------- 808

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
                   G   ++R                    NKA   ++  DGL  VG KL   +P
Sbjct: 809 --------GSKSFRR------------------STNKAEHFRIDADGLPSVGQKLYPDEP 842

Query: 845 MYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
             S + E  N+    +  G + + V+ V +     +     P  A I +R  RNP +GDK
Sbjct: 843 YCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKK----HPQRANIRFRHARNPIIGDK 898

Query: 905 FASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           F+SR GQKG+CS  WP  D+PF   +G+ PD++ NPH FPSRMTI  L
Sbjct: 899 FSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAML 946



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E G+N+YGTET+YSG  G  ++ +IF G V+YQRLRHMVSDK+Q +
Sbjct: 995  EKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 1040


>gi|123469849|ref|XP_001318134.1| DNA-directed RNA polymerase, beta subunit family protein
           [Trichomonas vaginalis G3]
 gi|121900885|gb|EAY05911.1| DNA-directed RNA polymerase, beta subunit family protein
           [Trichomonas vaginalis G3]
          Length = 1104

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 319/951 (33%), Positives = 484/951 (50%), Gaps = 122/951 (12%)

Query: 56  KPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF---EIYGKTLKLNIVKAAI 112
           +PP++Q + L    +PH+ SF++ ++ GL    E I P +F   +   + L  ++ +  +
Sbjct: 5   RPPEEQYKDLCHFLSPHLESFNWAVNTGLQKIPEWI-PEQFVKRDGDDRILHFHVKELTL 63

Query: 113 SEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIML 172
           ++P    G      NK YP   R     Y G  N+ +  + +      F+     +P+M+
Sbjct: 64  TKPYDARG------NKIYPYMCRLGGQTYGGSLNIILEAAINDLPPKKFSVVANNIPVMV 117

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
            S  CHL+ LTP +     E P E GGYFI  G+EKL+RLLI NR+N+  A+ R ++ +R
Sbjct: 118 NSDLCHLKGLTPQEKGALMEEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNRPSFHSR 177

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGS-------ARFMF---------------- 269
           G  F++     RS+  D S+    +H+   G+        R MF                
Sbjct: 178 GPTFTNFATSFRSMAPDCSSITTNVHYQNTGNMVVLIPIQRRMFFVPLPILLRALVEVDD 237

Query: 270 -SHRKSMC-----------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEV 317
            +  +S+C           ++  ++   E  IHT+  ++ F G  F+  LQ   RH    
Sbjct: 238 RTIYESICGQNPDSFYSDRVIATLRYASELDIHTRAGARDFLGAHFRTVLQCP-RHFTNE 296

Query: 318 EICDYMLTNCILPHLDDYW--DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
           E C+ +L   + PHL D     KF  L +MT +L  +V+G +  D+ D+    E++T G+
Sbjct: 297 ECCEVLLKRNLFPHLSDEAPSKKFDLLIYMTRRLLQLVKGEILPDNMDANSAHELLTPGT 356

Query: 376 LYLQLLKKE-----KSGTSAVLKES----DIYAAFR------ASSIESAMTNFLATGNVS 420
           L+L  L        K+  + V K+     D + A +      AS +E+ M    +TG++ 
Sbjct: 357 LWLPALSDAITDFLKATAANVYKDEKNAIDDFDALQTILKKNASGVENRMRYLFSTGSLR 416

Query: 421 AGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFIC 480
              NSTL L Q  G  I+AE IN  RY++HFR+VHRG++F  M+++  R L  ++WGF+C
Sbjct: 417 G--NSTLGLSQTEGLSIIAERINYCRYLAHFRSVHRGAFFTTMKTTAVRYLLPESWGFMC 474

Query: 481 PVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
           PVHTPDG  CGLL HL   C+I     S+   +I  +  + GM+P       +P     V
Sbjct: 475 PVHTPDGGLCGLLTHLARFCEIVTG-DSQGFKEIVQIFTNYGMVPFLGSGDMVP-----V 528

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           ++DGR+VG I ++++++ V  L+  +  G  IPK  EI  L            +Y+F   
Sbjct: 529 IVDGRVVGSIRERLSSAAVEALKTARRKG-IIPKMAEIADL----PAGSFTRSIYVFLNQ 583

Query: 601 GRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPM 660
            RM+RPV N+ A   E+ G  EQ+FMDI    K+       +RE+  T  LS +A+L P 
Sbjct: 584 QRMMRPVFNVKAQEQEYAGPLEQIFMDIASNPKDESKA---YREIHHTAMLSLIASLTPF 640

Query: 661 PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP 720
            D NQSPRNMYQCQM KQTMG P          K Y +  P  P  R +  D+  +++F 
Sbjct: 641 SDYNQSPRNMYQCQMAKQTMGYPSHREAASTEVKTYHVHYPQRPIVRTMEQDSHALEDFL 700

Query: 721 MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG 780
           +GTNA VAV+SYTGYDMEDA+++NK S ERGF HGCI+K+        + Y   E     
Sbjct: 701 LGTNACVAVLSYTGYDMEDALLINKCSVERGFGHGCIYKT--------HRYTAEE----- 747

Query: 781 VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLN 840
                +++  +F                 TKD    DP        L  DGL +VG +++
Sbjct: 748 -----IESNSYF---------------CNTKDGVIVDP-------DLDADGLPFVGQRVS 780

Query: 841 ERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT 900
           +   +   +   EN+     Y   E+  V+ V +++   +G  V      + +R+ R PT
Sbjct: 781 KGCKLLRVYNPKENKERIMSYKDGEDGFVDKV-ITTTSDDGKRVL--SVVLKFRMVRTPT 837

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKF+SR GQKG+ S  WP E++PF ++G+ PD++ NPH FPSRMTIG L
Sbjct: 838 IGDKFSSRHGQKGVFSFPWPQENMPFCENGITPDVIINPHAFPSRMTIGML 888



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 34/46 (73%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           + G+ YYG E MYSG+ G   +A IF GVV+YQRLRHMV DK+Q +
Sbjct: 928 KEGFEYYGNEAMYSGITGEQFKADIFMGVVYYQRLRHMVGDKYQVR 973


>gi|224053240|ref|XP_002297732.1| predicted protein [Populus trichocarpa]
 gi|222844990|gb|EEE82537.1| predicted protein [Populus trichocarpa]
          Length = 1109

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 326/960 (33%), Positives = 477/960 (49%), Gaps = 167/960 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI SFD+M+D GL++ +++I P                                      
Sbjct: 12  HIDSFDYMVDRGLEIMLDNIKP-------------------------------------- 33

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
              RQ +  Y+G F   V + +DG+         G+ PIMLKSK C+LR+  P QL+   
Sbjct: 34  --CRQAKVSYTGKFEADVCFQYDGRPVIREKYNFGQFPIMLKSKLCYLRSADPQQLVSLK 91

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR--- 248
           E   E GGYFI+ G E++ R LI  ++N+P+++ R +++ R    +D  V IR V+    
Sbjct: 92  EEASEVGGYFILNGIERVFRCLIMPKQNYPMSMTRGSYRERREGHTDKAVVIRCVREYQS 151

Query: 249 ---DESATNNVLHFVTNGSARFMFSHRKSMCLLGM---MQSLHE-------EGIHTQHDS 295
              D S+    L+++ NGSAR  F  R    LL +   +++L E       E + + +D 
Sbjct: 152 SLTDHSSVTVRLYYLRNGSARVGFWVRGREYLLPVGIVLKALVETTDREIYENLTSYYDE 211

Query: 296 K------VFFGQIFKEK--------------LQYD-LRHLN-------EVEICDYMLTNC 327
           K          Q+  E+               Q D L+H+         + +   +L + 
Sbjct: 212 KYEEVKGAVGSQLLGERAKIILDEVRVAALFTQDDCLQHIGTHNCISISITVAHAVLKDY 271

Query: 328 ILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--- 384
           +  HL ++ DKF  L  M  KLF  V      D+ DS+  Q+I+  G L    LK++   
Sbjct: 272 VFVHLPNFHDKFSLLIFMLQKLFSFVDHTSAPDNPDSLQNQDILLPGHLMTIYLKEKLED 331

Query: 385 --------------KSGTSAVLKESDIYAAFRASS---IESAMTNFLATGNVSAGKNSTL 427
                         K+ T   L   D+      +S   + +A+ + L +G ++    + L
Sbjct: 332 WLRKAKSLVQDELTKNNTFNFLAVGDVRKVMDKNSPVTVSTAVESMLRSGRLAT--QTGL 389

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
            L Q +G+ + AE +N +R++S FRAVHRG+ F   R++  R+L  ++WGF+CPVHTPDG
Sbjct: 390 DLQQRAGYTVQAERLNYLRFLSFFRAVHRGASFAGGRTTSVRKLLPESWGFLCPVHTPDG 449

Query: 488 TPCGLLNHLTTNCQISEYIPSK--------VLAQIPSVLVSLGMLPLTP-VIQSIPEQAL 538
            PCGLLNH+T +C+++ Y  S+        +   I  VL SLGM+   P ++Q+ P +AL
Sbjct: 450 EPCGLLNHMTCSCRVTSYFDSQGVVKDFFDIRKSILGVLTSLGMIASLPKLVQAGPPKAL 509

Query: 539 MVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLF 597
            V+LDGR++G +       ++  LR LK+     IP  +E+ Y+  P    G YPGLY+ 
Sbjct: 510 SVLLDGRVIGSLPSSEIEKVIAHLRRLKVSATSAIPDDMEVGYV--PLSIGGAYPGLYIS 567

Query: 598 TGPGRMLRPVMNLAA-----GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLS 652
           T P R +RPV N++       +IE IG FEQV  +   +   A+P   TH E+  T+ LS
Sbjct: 568 TYPSRFIRPVRNISIPCEERQDIELIGPFEQVSTEF--SFLNAFPA--THEEIHPTNMLS 623

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
            +ANL P  D NQSPRNMYQCQM KQTM     + R++   K+Y LQTP +P  R   Y 
Sbjct: 624 VVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQSLRFRADQKIYHLQTPQTPIVRTGAYT 683

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
              +D  P GTNAIVAV++YTGYDMEDAMILNKSS +RG  HG I              Y
Sbjct: 684 KYSIDEHPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMFHGQI--------------Y 729

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
            TET+    +GS                    SD+   +  F R   +++    +  DGL
Sbjct: 730 QTETIDLSDEGSR-------------------SDRSHRR--FRRSNTDRSSHSLIDSDGL 768

Query: 833 VYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
            YVG  +N  +P  S + +  N        G E   V+ V + +   +          I 
Sbjct: 769 PYVGQIINPNEPYCSIYNDITNTSKPKYRKGSEPAIVDYVAVDTKSKK----HLQKVNIR 824

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           +R  RNP +GDKF+SR GQKG+CS  WP  D+PF+  +G+ PD++ NPH FPSRMTI  L
Sbjct: 825 FRHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 884



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+N++G E +YSGV G+ +  +IF G V+YQRLRHMVSDK+Q +
Sbjct: 936 GFNHHGVEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVR 979


>gi|154274906|ref|XP_001538304.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces capsulatus
           NAm1]
 gi|150414744|gb|EDN10106.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces capsulatus
           NAm1]
          Length = 1214

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 324/1015 (31%), Positives = 497/1015 (48%), Gaps = 188/1015 (18%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     +  L     PHI SF+ + D    L+ A++DI    F          
Sbjct: 19  ERLFRHPPKDHTAYPSLAASIRPHIDSFNALFDNNKILEAALKDIGTKSFLDGDAETQEQ 78

Query: 97  ----------EIYGKTLKLNIVKAAISEPKVPAG-PVGIHFNKYYPTEARQTRSVYSGPF 145
                           L + I +  + +  +PA         + YP+E R+  + Y G  
Sbjct: 79  KRVRLDDGRRSPRRNKLSVRITELFLEKAMLPASNKFSTRNREIYPSECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML+S RCHL   +P QL++R E  +E GGYFIV G
Sbjct: 139 RARLEYRVNNGEWKESVRELGQVPIMLRSNRCHLEKCSPEQLVQRKEESEELGGYFIVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI  RRN P+AI R+++  RG  ++  G+ IRSV+ D+++  NVLH++++G+ 
Sbjct: 199 NEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRADQTSQTNVLHYLSDGNV 258

Query: 266 RFMFSHRKSMCLLGMMQSLH-------------------EEGI----------------- 289
            F FS RK+  L+ ++  L                     EGI                 
Sbjct: 259 TFRFSWRKNEYLVPVVMILKALVETNDREIFERLVGREGSEGIKNSFVTDRVELLLRTYK 318

Query: 290 ----HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
               + + D++ + G+ F+  L       +++   ++ L   +LPHL +         DK
Sbjct: 319 GYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEF-LRKVVLPHLGNQNVTESQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--------------- 383
           F  +  M  KL+ +V G    D+ D++  QE++ GGSLY  LLK+               
Sbjct: 378 FNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLYGMLLKERLEEWLRAFGPIARD 437

Query: 384 ---------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQ 428
                          EK   S ++  ++        +I  A+  FL+TGN+ +   + L 
Sbjct: 438 WSFRNQNARFSDPRFEKEFLSRIVSRTN-------ENIGGALEYFLSTGNLVS--PTGLD 488

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L Q SG+ ++AE IN  R++SHFR +HRGS+F         QL+T      C +      
Sbjct: 489 LQQPSGYTVIAEKINFYRFISHFRMIHRGSFFA--------QLKTTTVPHKCEI------ 534

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
                   T+N  +S          +P ++  LG+   + V     ++ ++V LDGRI+G
Sbjct: 535 -------ATSNLDVS---------GVPQLISDLGVTYESSVSL---DECVVVQLDGRILG 575

Query: 549 YILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           Y   + A  +   LR  K+ G K +P  LEI Y+  P    G YPG+YLF+   RM+RPV
Sbjct: 576 YCSPKQARMISDTLRYWKVAGNKSLPVELEIGYI--PNSNRGQYPGIYLFSQCARMMRPV 633

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
             L    ++++G FEQ FM+I     +   GI+TH E   T  LS +AN+ P  D NQSP
Sbjct: 634 RYLPLDKLDYVGPFEQPFMEIACVPSDIMSGISTHVEFDPTHILSIVANMTPFSDFNQSP 693

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQM KQ MGTP  +  Y+   KLYRLQT  +P  R   Y++  +DNFP G NA+V
Sbjct: 694 RNMYQCQMSKQAMGTPGASIEYRTDNKLYRLQTGQTPVVRTPLYNSYGLDNFPNGMNAVV 753

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           AV+SYTGYDM+DAMI+NKS+++RGF  G I+K+    L+        +    G   +  +
Sbjct: 754 AVLSYTGYDMDDAMIINKSAHDRGFGWGTIYKTKIYSLD--------DKESRGRGKARRE 805

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER----- 842
               FG         ++  +W+            AL++    DGL ++GA++ E      
Sbjct: 806 VSKLFGFAPGS----LIKGEWR-----------HALDE----DGLPHIGARVTEGSIVAA 846

Query: 843 ------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
                 DP+ + +   + +    +Y   EE  ++ VR+    +E G        + +R+ 
Sbjct: 847 WHTVRFDPVSNSYTNIDGQTHLLKYKDTEEGYIDNVRILG--SETGGDPCQAISVKFRVP 904

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R P +GDKF+SR GQKG+CS  WPA D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 905 RKPVIGDKFSSRHGQKGVCSQLWPAIDMPFSETGIQPDIIINPHAFPSRMTIGMF 959



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 998  KAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVR 1043


>gi|295673492|ref|XP_002797292.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides sp.
           'lutzii' Pb01]
 gi|226282664|gb|EEH38230.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides sp.
           'lutzii' Pb01]
          Length = 1220

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 326/1008 (32%), Positives = 500/1008 (49%), Gaps = 168/1008 (16%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF---------- 96
           ++ F  PP     +  L     PHI SF+ + D    L+ A+EDI    F          
Sbjct: 19  ERLFRHPPKDHTAYPSLAASIRPHIDSFNALFDNDKILEAALEDIGTKSFLDGDVETPEQ 78

Query: 97  -----EIYGKTLKLNIVKAAISEPKVPAG--PVGIHFN----KYYPTEARQTRSVYSGPF 145
                +   +  + N +   I+E  +     P    FN    + YP E R+  + Y G  
Sbjct: 79  KRARLDEGRRAPRRNKLSVRITELFLEKAMLPASNKFNTRNREIYPAECRERHATYRGRL 138

Query: 146 NVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
              + +  +        +E+G+VPIML+S RC+L   +P QL++  E  +E GGYF+V G
Sbjct: 139 RARLEYRINNGEWKESVRELGQVPIMLRSNRCYLEKCSPEQLVQHKEESEELGGYFVVNG 198

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
           +EKL+R+LI  RRN P+AI R+++  RG  ++  G+ IRSV+ D+++  N LH++++G+ 
Sbjct: 199 NEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPDQTSQTNFLHYLSDGNV 258

Query: 266 RFMFSHRKS-------MCLLGMMQSLHEE------------------------------- 287
            F F+ RK+       M L G++Q+   +                               
Sbjct: 259 TFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLVGHEGSKGIKNSFVTDRVELLLRTYK 318

Query: 288 --GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYW-------DK 338
             GIH + D + + G+ F+  L       +E    ++ L   +LPHL ++        DK
Sbjct: 319 GYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEF-LRKVVLPHLGNHSVTDSQDNDK 377

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-------------- 384
           F  +  M  KL+ +V G    D+ D++  QE++ GG LY  LLK+               
Sbjct: 378 FNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYGILLKERLEEWLRSFGPIAQD 437

Query: 385 --KSGTSAVLKESDIYAAFRA-------SSIESAMTNFLATGNVSAGKNSTLQLMQASGF 435
                 +A   +      F +        +I  A+  FL+TGN+ +   + L L Q SG+
Sbjct: 438 WSVKNQNARFTDPKFEKEFLSKIVARTNENIGGALEYFLSTGNLVS--PTGLDLQQPSGY 495

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            +MAE IN  R++SHFR +HRGS+F +++++  R+L             P+   C +   
Sbjct: 496 TVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKL------------LPETHKCKIE-- 541

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
            T+N  +S          +P ++ +LG   +T       E++++V +DGRI+GY   + A
Sbjct: 542 -TSNLDVS---------GVPQIISNLG---VTSESSVSLEESVVVQMDGRILGYCSPKQA 588

Query: 556 TSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN 614
             +   LR  K+ G K +P  LEI Y+  P    G YPG+YLF+   RM+RPV  L    
Sbjct: 589 RIISDTLRYWKVEGNKSLPVELEIGYV--PNSNRGQYPGIYLFSQCARMVRPVKYLPLDK 646

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           ++++G FEQ FM+I     +   G++TH E   T  LS +AN+ P  D NQSPRNMYQCQ
Sbjct: 647 LDYVGPFEQPFMEIACVPSDIISGVSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQ 706

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ MGTP  + +Y+   KLYRLQT  +P  RP  Y+   +DNFP G NA+VAV+SYTG
Sbjct: 707 MGKQAMGTPGTSIQYRTDNKLYRLQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTG 766

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDM+DAMI+N+S+++RGF  G I+K+    L+        E    G   +  +    FG 
Sbjct: 767 YDMDDAMIINRSAHDRGFGWGTIYKTKVYCLD--------EKESRGRGKAKREIAKLFGF 818

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY----WK 850
                   ++  +W+                 L  DGL ++G ++ E   + ++    + 
Sbjct: 819 AP----GGLIKGEWR---------------QTLDEDGLPHIGVRVTEGSIVAAWHTVRFD 859

Query: 851 ESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
              N Y+         +Y   EE  ++ VR+    +E G        I YRI R P +GD
Sbjct: 860 AVSNSYINIDRQTHFFKYKDTEEGYIDSVRILG--SETGGDPCQAISIKYRIPRKPVIGD 917

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KF+SR GQKG+CS  WPA D+PF++SG+ PD++ NPH FPSRMTIG  
Sbjct: 918 KFSSRHGQKGVCSQLWPAIDMPFSESGIQPDVIINPHAFPSRMTIGMF 965



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN++G E MYSG+ G    A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1004 KAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVR 1049


>gi|452825716|gb|EME32711.1| DNA-directed RNA polymerase subunit isoform 2 [Galdieria sulphuraria]
          Length = 1221

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 325/958 (33%), Positives = 487/958 (50%), Gaps = 161/958 (16%)

Query: 103  LKLNIVKAAISEP-KVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
            +++++    + +P + P     +H +K  P   R+ ++ Y  P  +T+    DGK     
Sbjct: 132  VEIDVANIEVRKPSQYPKARRSVH-DKLLPRHCRENQTSYKAPLFLTLRCKIDGKVCHQL 190

Query: 162  TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
             + VG +P+M++S  CHL  +   +L + GE   E GGYFI  G EK++R++I +RRNH 
Sbjct: 191  VRLVGEIPVMVRSAVCHLSKMDSGELRKLGEEEFETGGYFICNGVEKVLRMIIVSRRNHI 250

Query: 222  IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS--ARFMFSHRKSMC-LL 278
            +AIKR++  NRG LFS    YIR V+ D+++    LH++T+G+  AR   S ++ M  +L
Sbjct: 251  MAIKRDSNSNRGPLFSSFSCYIRCVRPDQTSKTFHLHYLTSGAIQARISISKQEYMIPVL 310

Query: 279  GMMQSL----------------HEEGIH------------------TQHDSKVFFGQIFK 304
             + ++L                +E  I+                  T      + G+ F+
Sbjct: 311  LIFKALIPEITDRTIYEVIMQGNENDIYLRDRVIAMLMDGLSKYEGTAGSELAYLGRTFR 370

Query: 305  EKLQYDLRHLNEVEICDYMLTNCILPHL-------DDYWDKFLCLSHMTCKLFHVVQGMV 357
              L      + + ++    L + +L HL       DD   K   L+ M  KL  V +G +
Sbjct: 371  IALSIFDDQVTDEQVGRQFLKHFVLIHLSGDKYTDDDNVAKLEMLALMIRKLIAVARGSI 430

Query: 358  QLDSEDSIMLQEIMTGGSLYLQLLKKEKSG-----TSAVLKESDIYAAFRAS-------- 404
              DS DS+  QE++  G LY+  LK++         S +LK+ ++  A            
Sbjct: 431  CPDSPDSLAHQEVLLPGHLYMMYLKEKIEDYLLGIRSVILKDFNMKKAIHLEEGPYFATC 490

Query: 405  ------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
                   I   M +F+ATG +     + L LMQ +G+ ++AE I+  RY+SHFR VHRG 
Sbjct: 491  LQRCPIDIGKRMEHFIATGQLQT--RTGLDLMQTAGYSVVAERISYYRYISHFRCVHRGQ 548

Query: 459  YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP--S 516
            +F E++++  R+L  +AWGF+CPVHTPDG PCGLLNHL     +S+   S+ +A  P  S
Sbjct: 549  FFSELKTTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAHPVIVSQ---SEEMATEPLLS 605

Query: 517  VLVSLGMLPLTPVIQSIP---EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-- 571
             LV  GM  L+    S+         V+LDG+I+GY+   I  ++  ++R+LK+  E   
Sbjct: 606  WLVEHGMT-LSNKYSSLEMPNAWEYPVVLDGKILGYLSVDIMMNISQQMRILKVNNEMNI 664

Query: 572  IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--IEWIGTFEQVFMDIC 629
            +PK+ EIV + R       +PGL++FTGP R+LRPV  L + +   E+IG  EQ F+ I 
Sbjct: 665  LPKTAEIVTVVRQTWNDRNFPGLFIFTGPARLLRPVWLLLSKSPKQEYIGPLEQAFLRIA 724

Query: 630  -----------ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
                       +   E+     TH E+    FLS +A+L P  D NQSPRNMYQCQM KQ
Sbjct: 725  NPKVVSLDWKNMKKDESVFVPATHEEIDCLSFLSLVASLTPFSDMNQSPRNMYQCQMSKQ 784

Query: 679  TMGTPCLNWRYQGVGKLYRLQTPASPFFRPV----------------HYDTLDMDNFPMG 722
            ++GTP   +  +   K+YRL TP   F   V                  D+ +MD+FP G
Sbjct: 785  SLGTPYHLFERRSDSKMYRLVTPQVSFSFHVWTSFDIFQIPIVRNFPTQDSFEMDHFPNG 844

Query: 723  TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
             NA+VAV+SYTGYDMEDAM++NK+S +RG AHG ++ +  I+L+      GT++ Y G  
Sbjct: 845  FNAVVAVLSYTGYDMEDAMVINKASLDRGLAHGTMYSTQLIDLD---QMRGTKSKYIG-G 900

Query: 783  GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER 842
            GS                                        + +G DGL  VG ++ + 
Sbjct: 901  GSQ--------------------------------------HETIGEDGLPEVGVRVFKG 922

Query: 843  DPMYSYWKE---------SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            DP+Y    E         SE  Y    +   +   V+ VR+    +   +     A I  
Sbjct: 923  DPLYCIADETVYSLASGTSEKVYF---HKQADPAIVDQVRLIPVTSRASAEGIRRASIKL 979

Query: 894  RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKFASR GQKG+ S  WP+ED+PFT++G+VPDI+FNP+GFPSRMTIG +
Sbjct: 980  RYPRIPVIGDKFASRHGQKGVLSALWPSEDMPFTENGIVPDIIFNPNGFPSRMTIGMM 1037



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++G+N+YG E MYSG  G   Q  IF GV+HYQRLRHMVSDK+Q +
Sbjct: 1076 KAGFNFYGNEVMYSGYTGEPFQVDIFIGVIHYQRLRHMVSDKFQVR 1121


>gi|297851416|ref|XP_002893589.1| hypothetical protein ARALYDRAFT_313639 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339431|gb|EFH69848.1| hypothetical protein ARALYDRAFT_313639 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1188

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 332/1013 (32%), Positives = 498/1013 (49%), Gaps = 154/1013 (15%)

Query: 34  MILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAP 93
           M++N    + P++++L +             L  L   HI SFD+M  +GLD+    I P
Sbjct: 1   MVVNAKDSTVPTMEDLKE-------------LHNLVTHHIESFDYMTQKGLDVMFNRIKP 47

Query: 94  IE-FEIYGKTLKLNIVKAAIS--EPKVPAGPVGIHFNK------YYPTEARQTRSVYSGP 144
           +  ++   +    NI+   I   E  V   P    F          P E RQ +  Y+G 
Sbjct: 48  VSVYDPNTENELSNILFFMILWLENPVVFAPQKESFRSTSRKEPLLPFECRQAKISYTGT 107

Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
           F   V + ++         + G+ PIML SK C LR     +L++  E   E GGYFI+ 
Sbjct: 108 FMADVCFKYNDGVVVRDRFDFGQFPIMLMSKLCSLRGADCRKLLKCKESTSEMGGYFILN 167

Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS 264
           G E++ R +I  +RNHP ++ RN++++R   +++  V  R V+ D+S+    L+++ NGS
Sbjct: 168 GIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYTEKAVVTRCVRDDQSSVTVKLYYLRNGS 227

Query: 265 AR--FMFSHRKSMCLLGM------------------------------------------ 280
           AR  F    R+ +  +G+                                          
Sbjct: 228 ARVGFWIVGREYLLPVGLVLKALTNTCDEEIYESLNCCYSEHYGRGDGAIGTQLIRERAK 287

Query: 281 --MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDK 338
             +  + + G+ T+   +   GQ F+  L   L   +   + + +L + +  HLD+  DK
Sbjct: 288 IILDEVRDLGLFTREQCRKHLGQHFQPVLD-GLEKESHPMVAEAVLRDYLFVHLDNDHDK 346

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---SLYLQ------------LLKK 383
           F  L  +  KL+ +V      D+ DS+  QEI+  G   ++YL+            LLK 
Sbjct: 347 FNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEDWLRKCKSLLKD 406

Query: 384 EKSGTSAVLK-ES--DIYAAFRAS---SIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
           E   TS+    ES  D+      +   SI +++   L TG +     S L L Q +G+ +
Sbjct: 407 ELLNTSSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKT--QSGLDLQQRAGYTV 464

Query: 438 MAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
            AE +N +R++S FRAVHRG+ F  +R++  R+L  ++WGF+CPVHTPDGTPCGLLNH+T
Sbjct: 465 QAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMT 524

Query: 498 TNCQISEYIPSK--------VLAQIPSVLVSLGMLPLTP-VIQSIPEQALMVMLDGRIVG 548
              +I+    SK        +   +  VL   GM+   P ++++ P + + V+LDG++VG
Sbjct: 525 CTSRITSQFDSKGNIRDFLKIRKSVVEVLTGAGMVSSLPKLVRAGPPKVIHVLLDGQVVG 584

Query: 549 YILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
            +   + T +V  LR LK+     IP+ LE+ Y+  P    G YPGLYL + P R +RPV
Sbjct: 585 TLSSNLVTKVVSYLRRLKVEAPSVIPEDLEVGYV--PISMGGSYPGLYLASCPARFIRPV 642

Query: 608 MNLA--AGNIEWIGTFEQVFMDICIT------MKEAYPGITTHRELSKTDFLSNLANLIP 659
            N++  + NIE IG FEQVFM+I            + P   TH E+  T  +S +ANL P
Sbjct: 643 KNISIPSENIELIGPFEQVFMEISCPDGGNGGRNNSSPA--THEEIHPTGMISVVANLTP 700

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
             D NQSPRNMYQCQM KQTM       +++   K+Y LQTP SP  R   Y T  +D  
Sbjct: 701 WSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDEN 760

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P GTNAIVAV+++TG+DMEDAMILNKSS ERG  HG I+++  I+L    + Y +     
Sbjct: 761 PTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRYDS----- 815

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
                                             F R   +K+   ++  DGL YVG K+
Sbjct: 816 ------------------------------GHKSFRRSTTDKSDHSRIDADGLPYVGQKI 845

Query: 840 NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
              +P    + E   +    +  G + + V+ V +     +     P  A I +R  RNP
Sbjct: 846 YPDEPYCRIYDEVTGKQRLMKGKGTDPVIVDFVSVDMKSKK----HPQKANIRFRHARNP 901

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
            +GDKF+SR GQKG+CS  WP  ++PF   +G+ PD++ NPH FPSRMTI  L
Sbjct: 902 IIGDKFSSRHGQKGVCSQLWPDIEMPFNGVTGMRPDLIINPHAFPSRMTIAML 954



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E G+NYYGTET+YSG  G  ++ +IF G V+YQRLRHMVSDK+Q +
Sbjct: 1003 EKGFNYYGTETLYSGSLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 1048


>gi|195997459|ref|XP_002108598.1| hypothetical protein TRIADDRAFT_51662 [Trichoplax adhaerens]
 gi|190589374|gb|EDV29396.1| hypothetical protein TRIADDRAFT_51662 [Trichoplax adhaerens]
          Length = 780

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 279/646 (43%), Positives = 367/646 (56%), Gaps = 101/646 (15%)

Query: 324 LTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK 383
           L NCI  HLD   DKF  L +M  KL+ V  G  Q++S+DS M QEI+ GG +Y  +LK+
Sbjct: 9   LRNCIAVHLDRNEDKFNLLIYMIRKLYAVANGECQIESQDSPMNQEILLGGHMYSMVLKE 68

Query: 384 E----------------KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
           +                       L+ + + AA   ++I + +  FLATGN+ A   + L
Sbjct: 69  KLELWLSRVKNLILKYMAKTNDEKLENAIVRAANNGTNIPNQLEYFLATGNLVA--RADL 126

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
            LMQ +G+V++A+ +N MR++SHFR+VHRGS+F EMR++  R+L  +AWGF+CPVHTPDG
Sbjct: 127 GLMQVAGYVLVADRLNFMRFVSHFRSVHRGSFFTEMRTTAVRKLLPEAWGFLCPVHTPDG 186

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT-PVIQSIPEQALMVMLDGRI 546
            PCGLLNHL  +C++   +      ++ S L  LGML L+ P+I+     A +V+LDG+I
Sbjct: 187 APCGLLNHLAASCKVVTKMSDTT--KLVSTLYELGMLSLSDPLIEY--SSAHVVILDGKI 242

Query: 547 VGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
           VGYI  +I   +  KLR LKI   + +  S EI  +   +   GLY GLYLFT P RM+R
Sbjct: 243 VGYIQKEIGKEIADKLRYLKINNMDMVDPSTEIALVH--DGISGLYNGLYLFTSPARMIR 300

Query: 606 PVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
           PV NL     E IGTFEQVFMDICIT +EAY  +TTH+ELS    LS LA L P  D NQ
Sbjct: 301 PVTNLRLQKQEMIGTFEQVFMDICITAEEAYAEVTTHQELSPCSMLSALARLTPFSDFNQ 360

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRNMYQCQMGKQTMGTP  +++Y+   KLYR+Q                          
Sbjct: 361 SPRNMYQCQMGKQTMGTPIQSFKYRSDNKLYRIQ-------------------------- 394

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
                   GYDMEDAMILNKSS ERGFAH  I+KS  I L S              DG  
Sbjct: 395 --------GYDMEDAMILNKSSVERGFAHATIYKSEVINLNS-----------KTADG-- 433

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM 845
                                     + FG+ P      D +  DGL  +G+ LN  DP 
Sbjct: 434 -------------------------LEIFGQTPGTTD-SDNIDLDGLPKIGSILNSGDPY 467

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
           Y     S ++ V   Y G+E+  V+ V++    +    +   C  + +RI+RNP +GDKF
Sbjct: 468 YCTLNLSTSQCVVHYYRGQEQGIVDDVKLLGSDSGRKPLQRIC--VKFRIERNPIIGDKF 525

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +SR GQKG+CS  WP E++PFT+SG+ PDI+FNPHGFPSRMTIG +
Sbjct: 526 SSRHGQKGVCSQLWPIENMPFTESGMTPDILFNPHGFPSRMTIGMM 571



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 5/59 (8%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDPA 819
           ++GYNY+GTE MY G+ G   +A IF G V+YQRLRHM+SDK+Q +     D   R P 
Sbjct: 610 KAGYNYFGTERMYDGMSGEEFEANIFIGTVYYQRLRHMISDKFQVRTTGPIDSLTRQPV 668


>gi|327265571|ref|XP_003217581.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
           [Anolis carolinensis]
          Length = 692

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 261/526 (49%), Positives = 324/526 (61%), Gaps = 42/526 (7%)

Query: 427 LQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
           L ++Q SG  +MA+ +N +RY+SHFR VHRG+ F +MR++  R+L  ++WGF+CPVHTPD
Sbjct: 3   LGMLQTSGLSVMADKLNFVRYLSHFRCVHRGADFIKMRTTTVRKLLPESWGFLCPVHTPD 62

Query: 487 GTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRI 546
           G PCGL+NHLT  C+I     S     +PS+L SLG+ P   V      +   V LDG +
Sbjct: 63  GEPCGLMNHLTAPCEI--VTQSLFTTSLPSLLCSLGVTPTDGVPNQPYSECYPVTLDGSL 120

Query: 547 VGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
           VG+I   +A  LV  LR  K + EK IP   E+V +    K   LYPGL++FT P RM+R
Sbjct: 121 VGWIEKDLAPGLVETLRHCKAMQEKKIPVWTEVVLIPMTGKP-SLYPGLFIFTTPCRMMR 179

Query: 606 PVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
           PV NLA G  EWIGT EQVFM+I +   E   G+TTH+EL     LS +AN IP  D NQ
Sbjct: 180 PVRNLALGKEEWIGTMEQVFMNIAVLENEIELGLTTHQELFPHSMLSVVANFIPFSDHNQ 239

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRNMYQCQMGKQTMG P L + Y+   KLYRLQTP SP  RP  YD  DMD++P+GTNA
Sbjct: 240 SPRNMYQCQMGKQTMGFPLLTFPYRTDDKLYRLQTPQSPLVRPAMYDHYDMDSYPIGTNA 299

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
           IVAVISY+GYDMEDAMILNKSS+ERGFAHG I+K+  I+L        TE +  G D  +
Sbjct: 300 IVAVISYSGYDMEDAMILNKSSWERGFAHGSIYKTERIDL--------TEKIKQGEDNLV 351

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM 845
                                       FG  P   A    L  DGL  +G++L   DP 
Sbjct: 352 ----------------------------FGIGPDRAATLKNLDADGLPPIGSRLQYGDPY 383

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
           YSY   +        +  KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKF
Sbjct: 384 YSYLNLNTGESFVTYHKNKEVCVVDNIKVCSNDTGSGQF--KCVCITLRVPRNPTIGDKF 441

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ASR GQKGI S  WPAED+PFT+SG++PDI+FNPHGFPSRMTIG L
Sbjct: 442 ASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGML 487



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYNYYGTE MYSGV G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 528 GYNYYGTERMYSGVSGVELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGR 587

Query: 828 GPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMCVE 870
              G +  G    ERD + ++       +R   C       +CV+
Sbjct: 588 NVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVQ 630


>gi|12324162|gb|AAG52049.1|AC022455_3 DNA-directed RNA polymerase subunit, putative; 8546-1198
           [Arabidopsis thaliana]
          Length = 1114

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 310/890 (34%), Positives = 462/890 (51%), Gaps = 117/890 (13%)

Query: 133 EARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGE 192
           + RQ +  Y+G F   V + ++         + G+ PIML SK C L+     +L++  E
Sbjct: 39  DCRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKE 98

Query: 193 HPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESA 252
              E GGYFI+ G E++ R +I  +RNHP ++ RN++++R   +S   V  R V+ D+S+
Sbjct: 99  STSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSS 158

Query: 253 TNNVLHFVTNGSAR--FMFSHRKSMCLLGMM-----QSLHEE------------------ 287
               L+++ NGSAR  F    R+ +  +G++      S  EE                  
Sbjct: 159 VTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGDG 218

Query: 288 GIHTQ---HDSKVFFGQI------FKEKLQYDL-RHLNEV--EICDYMLTNCILPHLDDY 335
            I TQ     +K+   ++       +E+ +  L +H   V   + + +L + +  HLD+ 
Sbjct: 219 AIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVAEAVLRDYLFVHLDND 278

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---SLYL-----QLLKKEKSG 387
            DKF  L  +  KL+ +V      D+ DS+  QEI+  G   ++YL     + L+K KS 
Sbjct: 279 HDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSL 338

Query: 388 TSAVLKESDIYAAFRA-------------SSIESAMTNFLATGNVSAGKNSTLQLMQASG 434
               L  ++   +F +              SI +++   L TG +     S L L Q +G
Sbjct: 339 LKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKT--QSGLDLQQRAG 396

Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
           + + AE +N +R++S FRAVHRG+ F  +R++  R+L  ++WGF+CPVHTPDGTPCGLLN
Sbjct: 397 YTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLN 456

Query: 495 HLTTNCQISEYIPSK--------VLAQIPSVLVSLGMLPLTP-VIQSIPEQALMVMLDGR 545
           H+T   +I+    SK        +   +  VL   GM+P  P ++++ P + + V+LDG+
Sbjct: 457 HMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQ 516

Query: 546 IVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
           +VG +   + T +V  +R LK+     IP+ LE+ Y+  P    G YPGLYL + P R +
Sbjct: 517 VVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYV--PTSMGGSYPGLYLASCPARFI 574

Query: 605 RPVMNLA--AGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPD 662
           RPV N++  + NIE IG FEQV   I I     +P   TH E+  T  +S +ANL P  D
Sbjct: 575 RPVKNISIPSDNIELIGPFEQVANPINIIFISTFPA--THEEIHPTGMISVVANLTPWSD 632

Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
            NQSPRNMYQCQM KQTM       +++   K+Y LQTP SP  R   Y T  +D  P G
Sbjct: 633 HNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTG 692

Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
           TNAIVAV+++TG+DMEDAMILNKSS ERG  HG I+++  I+L    + + +        
Sbjct: 693 TNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDS-------- 744

Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER 842
                     G   ++R                    NKA   ++  DGL  VG KL   
Sbjct: 745 ----------GSKSFRR------------------STNKAEHFRIDADGLPSVGQKLYPD 776

Query: 843 DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
           +P  S + E  N+    +  G + + V+ V +     +     P  A I +R  RNP +G
Sbjct: 777 EPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKK----HPQRANIRFRHARNPIIG 832

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG+CS  WP  D+PF   +G+ PD++ NPH FPSRMTI  L
Sbjct: 833 DKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAML 882



 Score = 65.9 bits (159), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           E G+N+YGTET+YSG  G  ++ +IF G V+YQRLRHMVSDK+Q +
Sbjct: 931 EKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 976


>gi|156034861|ref|XP_001585849.1| hypothetical protein SS1G_13366 [Sclerotinia sclerotiorum 1980]
 gi|154698769|gb|EDN98507.1| hypothetical protein SS1G_13366 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1165

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 324/999 (32%), Positives = 491/999 (49%), Gaps = 185/999 (18%)

Query: 51  DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY--------- 99
           +K F  PP   + +  L    APHI SF+ + ++   L  + +  I  + Y         
Sbjct: 25  EKLFRDPPKDHSAYPALTAAVAPHIESFNALFEKD-GLIAQGLLDIGSKTYLDGDDRLGP 83

Query: 100 -GKTLKLNIVKAAISEPKV--PAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
            GK      +K    E  +  P+        +  P E R+    Y G  +  + +S +  
Sbjct: 84  SGKNRLTVRIKEVFVEKSMLPPSNKFSTKNREILPAECRERHVTYRGKMSARMEYSINNG 143

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
               F +++G++P+ML S +CHL+N +PAQL++  E  +E GGYF+V G EK++RLL+ N
Sbjct: 144 DPKEFIRDLGQLPLMLMSNKCHLQNNSPAQLVQNKEESEELGGYFVVNGIEKIIRLLVVN 203

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-- 274
           RRN P+AI R ++K RG  +++ G+ IRSV+ D+++  NVLH++ +G+  F FS RK+  
Sbjct: 204 RRNFPMAIIRPSFKGRGPAYTEFGMLIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEF 263

Query: 275 -----MCLLGMMQSLHEE---------------------------------GIHTQHDSK 296
                M L  ++++  +E                                 G++T+  ++
Sbjct: 264 LVPAMMILKALVETNDKEIFEGLVGTPGSKGTDNTFLNDRVELLLRTYKAYGLYTKSKTR 323

Query: 297 VFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCKL 349
            + G+ F+  L      ++  ++    L   +L HL +         DKF  L  MT KL
Sbjct: 324 AYLGEKFRIVLGVP-DTMSNYDVGTEFLRKIVLVHLGNTNVTEAQDKDKFKMLLFMTRKL 382

Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG---------------------- 387
           + +V G    D+ D++  QEI+ GG L+  ++K+                          
Sbjct: 383 YSLVAGDCAGDNPDAVQNQEILLGGFLFGMIIKERLEDWLHTSLRMALRDYVRRSPENNF 442

Query: 388 -TSAVLKESDIYAAFRASS-IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
            T   LK+  +    R +  +  A+  F++TGN+ +   + L L Q SGF ++AE IN +
Sbjct: 443 VTPEFLKDFPVKICSRTNEQVGGALEYFMSTGNLVS--PTGLDLQQTSGFTVVAEKINFL 500

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
           R+++HFR +HRGS+F +++++                                       
Sbjct: 501 RFIAHFRMIHRGSFFAQLKTTT-------------------------------------- 522

Query: 506 IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
           +P      +P +L  LG++       S  +++++V LDG+I+G+   + +  +   LR  
Sbjct: 523 VP------LPKLLSELGVVSTG---SSSTDESVVVQLDGKIMGWCSPKQSLVIADTLRYW 573

Query: 566 KIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV 624
           K+ G   +P +LEI Y+  P    G YPG+YL   P RM+RPV  LA    +++G  EQ 
Sbjct: 574 KVEGTHGVPTNLEIGYI--PNSHGGQYPGIYLSAAPARMVRPVKYLALDKEDFVGPLEQP 631

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
           FM I +T +E   G  TH E   T  LS LAN+ P  D NQSPRNMYQCQMGKQ+MGTP 
Sbjct: 632 FMSIAVTEQEIEAGEHTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQSMGTPG 691

Query: 685 LNWRYQGVGKLYRLQTPASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
              RY+   K YRLQT  +P  R P+H D    DNFP G N++VAVISYTGYDM+DAMI+
Sbjct: 692 TAIRYRTDNKAYRLQTGQTPIVRAPLHND-YGFDNFPNGMNSVVAVISYTGYDMDDAMII 750

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           NKS++ERGF HG I+K+   ELE G+              S    +  FG         +
Sbjct: 751 NKSAHERGFGHGTIYKTKKYELEEGHK-----------SRSARNIKKLFGFAP----GGL 795

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTC 859
           V  +W            KA  D+   DGL ++G  +   D + + W     +   +YV  
Sbjct: 796 VKAEW------------KAAIDE---DGLPFIGRMVQNGD-LIAAWHTVSMDENGKYVNR 839

Query: 860 -------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
                  +Y   E   +E VR+     E G        +  RI R+P +GDKF+SR GQK
Sbjct: 840 DGQTHFEKYKETEIAFIEEVRLIG--NENGIEPCQAISVKLRIPRSPVIGDKFSSRHGQK 897

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G+CS KWPA D+PFT+SG+ PD + NPH FPSRMTIG  
Sbjct: 898 GVCSQKWPAVDMPFTESGIQPDTIINPHAFPSRMTIGMF 936



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNYYG E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 974  MKAGYNYYGNEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKYQVR 1020


>gi|313212713|emb|CBY36648.1| unnamed protein product [Oikopleura dioica]
          Length = 1140

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 313/954 (32%), Positives = 488/954 (51%), Gaps = 94/954 (9%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           +S+PS+K  +  N+GK P+ +N+ L  +   H+ SFD+ L+EGL      +AP EFE+  
Sbjct: 13  VSSPSIKQTSRVNYGKLPEDKNKQLKFISDTHVQSFDWFLEEGLPNIPNSVAPYEFEMEA 72

Query: 101 KT----LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWS--WD 154
                  +L +    + +P + +  V     + +P+E RQ ++ Y+ P +VT        
Sbjct: 73  NNDQMRFRLEVEHIEVGQPTLESSIV-CKDRRLFPSECRQKKTDYTAPVHVTFNLINLSS 131

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
           G+      K++ ++P+M+ S +CHLR L+P +L+ R E   E GGYFI  G+EK++RLL 
Sbjct: 132 GETQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARKEDHFEIGGYFIASGNEKVIRLLN 191

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS-----ARFMF 269
            NR    + + R          ++L V+    +    +   V+  +T+ +       FM 
Sbjct: 192 MNRTR--LVLDR---------LTELFVFYIQKQLFHVSMMTVVRALTSWTDLEIYREFMQ 240

Query: 270 SHRKSMCLLGMMQSLHEEGIHTQH---DSKVFFGQIFKEKLQYDL--RHLNEVEICDYML 324
           +          ++ + ++ +  QH       F GQ F+    +D+     ++VE     L
Sbjct: 241 TMSDEPNYDSAVKRMLKKLVKIQHHFLTQAKFLGQSFR---IFDICPAWKSDVEAGQAFL 297

Query: 325 TNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL--- 381
               L +L++  DK    + M  K F +       D  DS    +++  G L+  +    
Sbjct: 298 KRYCLIYLNNDEDKVRAFALMARKAFRISHNTCATDDIDSPESHDVLLPGHLFQSMTLEF 357

Query: 382 -----------------KKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKN 424
                            K+ + G   V +    +A  +  ++       +ATGN+    N
Sbjct: 358 FESYQRSVSMIMAKEYSKQLEKGNDEVGQNMLSFAINKIGNMNQHFKYLIATGNLKT--N 415

Query: 425 STLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
             L + Q +G V+ AE IN  R+ SHFR +HRG++F EMR++ PR+L T AWGFICPVHT
Sbjct: 416 DGLGMQQLAGIVVGAEKINFARFYSHFRCIHRGAFFMEMRATSPRKLSTAAWGFICPVHT 475

Query: 485 PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
           PDG PCGLLNHL    +I+  +  +  A++  +L+ +G+ P +       E  + V++DG
Sbjct: 476 PDGPPCGLLNHLAHTVRIN--VKRENTAKLEELLLEIGVKPCSIKAN---EFDIPVIIDG 530

Query: 545 RIVGYILDQIATSLVPK-LRMLKIVG-EKIPKSLEIVYLKRPE-KGMG-LYPGLYLFTGP 600
           + +G+I +      V K LR LK    +++P +LEIV+   PE KG   ++PG+ L T P
Sbjct: 531 KQIGWIANGWRAQAVEKYLRRLKTSSSDRVPDTLEIVHCPAPENKGEAVMFPGINLLTEP 590

Query: 601 GRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPM 660
            RM RP++NL    IE IG  EQV++ + +  KE++  +T ++EL     LS LA + P 
Sbjct: 591 ARMYRPLLNLREDKIEMIGIMEQVWLHVTVNQKESHE-LTEYQELYPAALLSELACMSPF 649

Query: 661 PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP 720
            + N   R + QCQM KQT G P     ++   K+YR+ TP  P  R   +D+  MD++P
Sbjct: 650 SNMNAGARVILQCQMAKQTFGWPSYTLNHRSDNKMYRILTPQEPLVRSHLHDSWGMDDYP 709

Query: 721 MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG 780
           +GTN ++AVISYTGYD+EDA  ++K S ERG  +G I+K+  ++L+      G     SG
Sbjct: 710 LGTNVMIAVISYTGYDLEDATCVSKMSRERGMMYGTIYKTKMVDLQDTAQSMGYR---SG 766

Query: 781 VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLN 840
                              LR    D++   +        K   DKL  DGL + G    
Sbjct: 767 -------------------LRLGCRDRFDPNEL---KAYRKIAGDKLDIDGLPFPGGIFT 804

Query: 841 ERDPMYSYWKESENRYVTCRY-SGKEEMCVEVVRMSSGF--TEGGSVTPNCAYIGYRIQR 897
            +D  Y Y+ E E +Y   +Y S  E+  VE VR+ +     EGG      A I +RI R
Sbjct: 805 YQDAYYCYYNEHEQKYSVGKYDSHAEDAIVESVRVFTNKRPQEGGFQQ---AAIQFRIAR 861

Query: 898 NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
              +GDK ASR GQKGICS  W   D+P+T++G+VPD++FNPHGFPSRMT+G +
Sbjct: 862 PINIGDKMASRHGQKGICSRLWATTDMPWTENGIVPDLIFNPHGFPSRMTVGMM 915



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 12/93 (12%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK------DYFGRDPA 819
            E+G NY+G E MYSG+ G  ++A IFFG V+YQRLRHMV DK+Q +      D + + P 
Sbjct: 954  EAGLNYHGYERMYSGISGEELEADIFFGPVYYQRLRHMVYDKFQARADKGPIDPYTQQPV 1013

Query: 820  NKALE------DKLGPDGLVYVGAKLNERDPMY 846
                        ++  DGL+  GA    RD ++
Sbjct: 1014 KGRARGGGVRMGEMERDGLISHGAAFICRDRLF 1046


>gi|9972352|gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1233

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 340/1063 (31%), Positives = 499/1063 (46%), Gaps = 207/1063 (19%)

Query: 34   MILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAP 93
            M++N    + P++++  +             L  L   HI SFD+M  +GLD+    I P
Sbjct: 1    MVVNAKDSTVPTMEDFKE-------------LHNLVTHHIESFDYMTLKGLDVMFNRIKP 47

Query: 94   IEFE-------------------IYGK-TLKLNIVKAAIS--------EPKVPAGPVGIH 125
            +                      +YG   ++   V   IS        E  +   P    
Sbjct: 48   VSVYDPNTENELSNILFFFVLNLLYGSCNVQFLFVLCLISLTSMILWLENPLVFAPQKES 107

Query: 126  FNK------YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHL 179
            F          P E RQ +  Y+G F   V + ++         + G+ PIML SK C L
Sbjct: 108  FKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSL 167

Query: 180  RNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL 239
            +     +L++  E   E GGYFI+ G E++ R +I  +RNHP ++ RN++++R   +S  
Sbjct: 168  KGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSK 227

Query: 240  GVYIRSVKRDESATNNVLHFVTNGSAR--FMFSHRKSMCLLGMM-----QSLHEE----- 287
             V  R V+ D+S+    L+++ NGSAR  F    R+ +  +G++      S  EE     
Sbjct: 228  AVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESL 287

Query: 288  ----------------------------------GIHTQHDSKVFFGQIFKEKL----QY 309
                                              G+ T+   +   GQ F+  L    + 
Sbjct: 288  NCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKE 347

Query: 310  DLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQE 369
             L  + E  + DY+       HLD+  DKF  L  +  KL+ +V      D+ DS+  QE
Sbjct: 348  SLSIVAEAVLRDYLFV-----HLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQE 402

Query: 370  IMTGG---SLYLQ------------LLKKEKSGTSAVLK-ESDIYAAFRASSIESAMTNF 413
            I+  G   ++YL+            LLK E   T++    ES        S I +++   
Sbjct: 403  ILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESRKSLLILFSLIGTSIETL 462

Query: 414  LATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRT 473
            L TG +     S L L Q +G+ + AE +N +R++S FRAVHRG+ F  +R++  R+L  
Sbjct: 463  LKTGALKT--QSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLP 520

Query: 474  DAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK--------VLAQIPSVLVSLGMLP 525
            ++WGF+CPVHTPDGTPCGLLNH+T   +I+    SK        +   +  VL   GM+P
Sbjct: 521  ESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVP 580

Query: 526  LTP-VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
              P ++++ P + + V+LDG++VG +   + T +V  +R LK+     IP+ LE+ Y+  
Sbjct: 581  SLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYV-- 638

Query: 584  PEKGMGLYPGLYLFTGPGRMLRPVMNLA--AGNIEWIGTFEQVFMDICITMKEAYPGI-- 639
            P    G YPGLYL + P R +RPV N++  + NIE IG FEQV   I I     +PGI  
Sbjct: 639  PTSMGGSYPGLYLASCPARFIRPVKNISIPSDNIELIGPFEQVANPINIIFISTFPGIQS 698

Query: 640  ------------------------------TTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
                                           TH E+  T  +S +ANL P  D NQSPRN
Sbjct: 699  NEKKKILPNQVFMEISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRN 758

Query: 670  MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
            MYQCQM KQTM       +++   K+Y LQTP SP  R   Y T  +D  P GTNAIVAV
Sbjct: 759  MYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAV 818

Query: 730  ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
            +++TG+DMEDAMILNKSS ERG  HG I+++  I+L    + + +               
Sbjct: 819  LAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDS--------------- 863

Query: 790  IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW 849
               G   ++R                    NKA   ++  DGL  VG KL   +P  S +
Sbjct: 864  ---GSKSFRR------------------STNKAEHFRIDADGLPSVGQKLYPDEPYCSIY 902

Query: 850  KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
             E  N+    +  G + + V+ V +     +     P  A I +R  RNP +GDKF+SR 
Sbjct: 903  DEVTNKTRHMKRKGTDPVIVDFVSVDMKSKK----HPQRANIRFRHARNPIIGDKFSSRH 958

Query: 910  GQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
            GQKG+CS  WP  D+PF   +G+ PD++ NPH FPSRMTI  L
Sbjct: 959  GQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAML 1001



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E G+N+YGTET+YSG  G  ++ +IF G V+YQRLRHMVSDK+Q +
Sbjct: 1050 EKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 1095


>gi|412990492|emb|CCO19810.1| RNA Polymerase subunit 2 [Bathycoccus prasinos]
          Length = 1149

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 327/977 (33%), Positives = 491/977 (50%), Gaps = 150/977 (15%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY------GKTLKLNIVKAAISEP--- 115
           L  L + H+ SFD  +D+GL     ++  ++ ++       G  L++      + +P   
Sbjct: 26  LKQLVSDHVNSFDQFIDQGLRDMSTELQHVKIKMSDEENGKGAYLQVWFENFYLEKPEKV 85

Query: 116 KVPAGPVGIHFN-KYYPTEARQTRSVYSGPFNVTVAWSWDGKA-GGTFTKEVGRV---PI 170
           +  A   G  F  + +P E R+T   Y G    TV     G        K + ++   PI
Sbjct: 86  RRDASFQGSLFEPRTFPGECRETGETYCGNLMSTVCHKIVGSCRDHPVHKNIIKICSFPI 145

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
           M+ S  CHL +L    LI+ GE   E GGYFIV G E+++RLLI  RR++ + + R+++ 
Sbjct: 146 MVASHACHLESLDKIGLIKHGEEDTESGGYFIVNGIERIIRLLIQQRRHYVLGLVRSSFL 205

Query: 231 NRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR------------------------ 266
            RG LFS     IR V + E ++   LH++  GSAR                        
Sbjct: 206 RRGALFSKFATSIRCVDKTEISSTIRLHYMKTGSARLGLTIERQEFYIPVGIIIRAITDS 265

Query: 267 -----FMFSHRK--------SMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRH 313
                FM S  +        + C++  +    +  I ++ D+  + G+ F+  L+   + 
Sbjct: 266 SEKEIFMNSDYRCNSENCLINDCIINCLHEATDADILSKMDALRYIGKYFRNLLRGQ-KF 324

Query: 314 LNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
           +++VE+ ++ +   I  HL    +K   L  M  KL  +VQG+ + D+ D++  QEIM  
Sbjct: 325 VSDVELGEFFIARYIFTHLKRQSEKANLLLFMLQKLTALVQGLCKPDNPDTLAHQEIMLP 384

Query: 374 GSLYLQLL--KKEKSGTSAVLK--------ESDIYAAFRASSIESAMTN----------- 412
           GSL   LL  K E       LK         +D   A   +SI++++             
Sbjct: 385 GSLLQGLLYEKMEHVLEQIRLKFQALFDVSYTDKVEALEPNSIQNSILQVIQKYDIGRHF 444

Query: 413 --FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
             FLATGN+ +   S L L Q+SGF I+A+ +N +R++SHFR+VHRG+YF E+R++  R+
Sbjct: 445 EYFLATGNLVS--KSGLGLSQSSGFTIVADKLNYLRFLSHFRSVHRGAYFTELRTTTIRK 502

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI--SEYIPSKVLAQIPSVLVSLGM-LPLT 527
           L  ++WGF+CP+HTPDG+PCGLLNHL   C+I  ++   +       +V  SLG+    T
Sbjct: 503 LLPESWGFLCPIHTPDGSPCGLLNHLAGECKIVVAKTRDTDFDLVRKTVKKSLGLNFEFT 562

Query: 528 -PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPE 585
               +   E  L V+LDG ++G + ++ A + V  LR  K+     IP+ LEI ++    
Sbjct: 563 NDSNRENLESLLPVLLDGLLIGSLHERDAANAVRVLRRAKVDSSSYIPRDLEIAHVTF-R 621

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM----------DICITMKEA 635
           KG G+YPG+Y+F+   R++RPV+  + GN+E IGT EQ FM          D C + K  
Sbjct: 622 KG-GVYPGIYIFSSSSRLVRPVLQTSGGNVELIGTLEQSFMSIKTQDGENRDFCKSFK-- 678

Query: 636 YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
                +H E+    FLS +A+L P  D NQSPRNMYQCQMGKQTMG P  ++ ++   KL
Sbjct: 679 ----YSHEEIYPDSFLSAVASLTPWSDYNQSPRNMYQCQMGKQTMGVPMHSFPFRSDSKL 734

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           YRL TP  P      YD   +DN+P+GTNA+VAV+SYTGYDMEDAMI+NK S ERG AH 
Sbjct: 735 YRLHTPQRPIALTKTYDKYGIDNYPLGTNAVVAVLSYTGYDMEDAMIMNKFSMERGLAHA 794

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
            ++K+  + L+   + +        V G + Q +                          
Sbjct: 795 TLYKTEGLTLKDKNDTF-------TVSGPLNQTKF------------------------- 822

Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
                         D     G+ L + D   S       +       G+++  V+ V++S
Sbjct: 823 --------------DASPLPGSILQKGDSFISVSNRISGKLKKTMLKGEDKGIVDRVKIS 868

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPD 934
           +   +      +   +  R  RNP +GDKF+SR GQKG+ S  WP EDLPF + +G+ PD
Sbjct: 869 ASQEQSSYEKLD---VTLRFNRNPIIGDKFSSRHGQKGVLSYLWPEEDLPFIERNGIKPD 925

Query: 935 IVFNPHGFPSRMTIGFL 951
           I+ NPH FPSRMTIG L
Sbjct: 926 IIINPHAFPSRMTIGML 942



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            GY + GTETM +G  G   +  IF G+V+YQRLRHMVSDK+Q +     +P  K
Sbjct: 986  GYKFTGTETMINGFTGCTFEVDIFIGLVYYQRLRHMVSDKFQVRSEGPNNPLTK 1039


>gi|308800510|ref|XP_003075036.1| RNA polymerase III, second largest subunit (ISS) [Ostreococcus
           tauri]
 gi|116061590|emb|CAL52308.1| RNA polymerase III, second largest subunit (ISS) [Ostreococcus
           tauri]
          Length = 1128

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 321/951 (33%), Positives = 477/951 (50%), Gaps = 144/951 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDI---------APIEFEIYGKTLKLNIVKAAISEPKVPAGPV 122
           H+ SF+  ++ GL   V  +            + +I+ + LK+  +++ +S     +   
Sbjct: 42  HVDSFNHFVNSGLSDIVRGVESQHISVGPGSRQVDIWLEDLKIESLRSKVSAVATSSSQT 101

Query: 123 GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK-AGGTFTKEVGRVPIMLKSKRCHLRN 181
                   P   R+    Y    +V+  W   G  A      ++G+ P+M++S  C L  
Sbjct: 102 --------PRSCREVGETYKTSMSVSYCWRLQGNDAMQRRVVQLGQCPVMVQSNVCSLAR 153

Query: 182 LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
           L PA+L+  GE  +E GGYFI+ G E+++R++I  RR+H + ++R A+  R    S L  
Sbjct: 154 LCPAELVAFGEEANEAGGYFIINGIERMIRMIIMQRRHHILGLRRRAFLKR----SPLSR 209

Query: 242 YIRSVKRDESATNNVLHFVTNGSARFMFSHRKS------------------------MCL 277
           +  +++         LH++ NGS +  F HR+                          C+
Sbjct: 210 HSSTIR---------LHYMRNGSLKVAFQHRREEFFIPAGLVLRSLVACSDAELHERACM 260

Query: 278 LGMMQSLHEEG-----------------IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEIC 320
             +  S HEE                  I TQ  +  + GQ F+  L+      ++  + 
Sbjct: 261 ELLGTSSHEETFVKERLAIIQEECQSLYIFTQISALSYLGQHFRTLLEASASE-SDAAVG 319

Query: 321 DYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQL 380
           +  L + I  HL    DK   L  M  KL  +V G    D  DS++ QE++  G L LQ 
Sbjct: 320 ERFLRDTIFIHLSRNGDKLSLLLLMMNKLLTLVTGGCGPDDPDSLVNQEVLLPG-LLLQK 378

Query: 381 LKKEKSGTS--AVLKE---------SDIYAAFRASS---IESAMTNFLATGNVSAGKNST 426
           + +EK   S   VL +          DI      ++   I  A+   LATGN+ +   + 
Sbjct: 379 IVREKIQISFQKVLTQIRGLDCRINEDIGRVIDETASLDIGKALEYILATGNLVS--PTG 436

Query: 427 LQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
           L L QASGF I+AE +N  RY+SHFR+VHRG+YF E+R++  R+L  ++WGF+CPVHTPD
Sbjct: 437 LGLSQASGFTIVAEKLNYFRYLSHFRSVHRGAYFMELRTTAVRKLLPESWGFLCPVHTPD 496

Query: 487 GTPCGLLNHLTTNCQISEYIPSK---VLAQIPSVLVS-LGMLPLTPVIQSIPEQALMVML 542
           G+PCGLLNHLT  C++   +P K   V ++   ++ S L    +    +S    ++ V++
Sbjct: 497 GSPCGLLNHLTEMCEV--VVPDKDPLVRSERLDLIKSKLAWALVDAEHRSRFHHSVPVIV 554

Query: 543 DGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG-MGLYPGLYLFTGPG 601
           +G  +GYI        V  LR  K   +   +  EI ++  P  G  GL+PGLY+F GP 
Sbjct: 555 EGVHMGYISIADVERAVAALREAKTGSQLSLQMTEICHI--PVHGEHGLFPGLYIFYGPS 612

Query: 602 RMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
           R++RPV  +  G IE +GT EQ F+ IC ++++    I TH EL  T  LS +A+L P  
Sbjct: 613 RLMRPVQQVHTGKIELVGTLEQSFLSIC-SLRKEMNDIFTHSELKMTSALSCIASLTPWS 671

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           D NQSPRNMYQCQM KQTMGTP  +  ++   KLYRL TP  P      YD   +DN+ +
Sbjct: 672 DFNQSPRNMYQCQMAKQTMGTPMHSICFRSDTKLYRLHTPQRPVALTYTYDKYALDNYAL 731

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           GTNA+VAV++YTGYDMEDAMILNK S  RGFAH  ++K++ +E  S +   G     S  
Sbjct: 732 GTNAVVAVLAYTGYDMEDAMILNKGSLTRGFAHATLYKTI-VETASKHEVIGMNASQSRT 790

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
           +  +      FG V    +                 P +  L    G +GL         
Sbjct: 791 NEHIDS----FGTVDVGSV---------------ASPGSTVLRVNNG-EGL--------- 821

Query: 842 RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
                     +++R +  R  G +   V+ V ++S  T+ G+     A I +R  RNP +
Sbjct: 822 ----------TKSRQI--RIKGTDPAVVDRVVLTST-TQKGNQNVKRAAITFRYDRNPVI 868

Query: 902 GDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           GDKF+SR GQKG+ S  WP ED+PF + +G+ PD++ NPH FPSRMTIG L
Sbjct: 869 GDKFSSRHGQKGVLSFLWPEEDMPFCERTGVRPDVIINPHAFPSRMTIGML 919



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV--SDKWQTKDYFGRDPANKAL 823
            E GYN+ G E+M +G  G      IF G+V+YQRLRHMV  S K    D   R  ++ + 
Sbjct: 959  EHGYNFCGNESMINGYTGESFSVDIFIGIVYYQRLRHMVMISSKCAPLDQIIRLQSSPSK 1018

Query: 824  EDKL 827
            E+ L
Sbjct: 1019 EENL 1022


>gi|207340417|gb|EDZ68774.1| YPR010Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 835

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 262/640 (40%), Positives = 362/640 (56%), Gaps = 70/640 (10%)

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------ 384
           DKF  L  M  KL+ +V G    D+ D+   QE++ GG LY  +LK++            
Sbjct: 1   DKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQV 60

Query: 385 ----KSGTSAVLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
                 G +   K+    +        +I S M  FL+T N+ +   S L L Q SG+ +
Sbjct: 61  RMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTANLVS--QSGLDLQQVSGYTV 118

Query: 438 MAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
           +AE IN  R++SHFR VHRGS+F +++++  R+L  ++WGF+CPVHTPDG+PCGLLNH  
Sbjct: 119 VAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFA 178

Query: 498 TNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
             C+IS       +++IPS+L SLG+ P +    + P     V +DG+I+G++  +    
Sbjct: 179 HKCRIS--TQQSDVSRIPSILYSLGVAPASHTFAAGPS-LCCVQIDGKIIGWVSHEQGKI 235

Query: 558 LVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNI 615
           +   LR  K+ G+   +P  LEI Y+  P    G YPGLYLF G  RMLRPV  L     
Sbjct: 236 IADTLRYWKVEGKTPGLPIDLEIGYV--PPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKE 293

Query: 616 EWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
           + +G FEQV+M+I +T +E    + TH E + T+ LS LANL P  D NQSPRNMYQCQM
Sbjct: 294 DIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQM 353

Query: 676 GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGY 735
           GKQTMGTP +   ++   KLYRLQT  +P  +   YD   MDNFP G NA+VAVISYTGY
Sbjct: 354 GKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGY 413

Query: 736 DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVV 795
           DM+DAMI+NKS+ ERGF +G ++K+  ++L    N     T + G               
Sbjct: 414 DMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFG--------------- 458

Query: 796 HYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENR 855
                             FG D   K   +KL  DGL Y+G  + E DP+ +Y+ ++ N+
Sbjct: 459 ------------------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNK 500

Query: 856 YVTCRYSGKEEMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
                Y   E   +E V +    S+ F E  +V+     I YRI+R P +GDKF+SR GQ
Sbjct: 501 TKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQ 555

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG+CS KWP  D+PF+++G+ PDI+ NPH FPSRMTIG  
Sbjct: 556 KGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMF 595



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           ++GYNY+G E MYSG  G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 634 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 679


>gi|222613075|gb|EEE51207.1| hypothetical protein OsJ_32024 [Oryza sativa Japonica Group]
          Length = 1150

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 338/1017 (33%), Positives = 472/1017 (46%), Gaps = 220/1017 (21%)

Query: 52  KNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAA 111
           K+     + Q   L  L  PHI SFD+ +DEGLD  ++ I P+E  +      L  +   
Sbjct: 5   KSSSASKEDQYAALRELYRPHIDSFDYFIDEGLDKMLQSIRPVEITVPKSPTTLRNILPE 64

Query: 112 ISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIM 171
           +  PK                                           +  K+V ++  +
Sbjct: 65  LGTPK------------------------------------------ASILKKV-QIHHI 81

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           L SK CHLR     +LI  GE   E GGYFI GG E+LVR+LI  +RN+P+ + R ++ N
Sbjct: 82  LVSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIRGSFVN 141

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR--FMFSHRKSMCLLGM-MQSLHEEG 288
           RG  ++D  V IR V+ D+S+    L+++ NGSAR  F    R+ +  +G+ +++L +  
Sbjct: 142 RGAGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLLPVGIVLKALIDTS 201

Query: 289 I-------------HTQHDSKVFFGQIFKEKLQYDLRHLNEVE----------------- 318
                         H +    V   Q+  E+ Q  L  + ++                  
Sbjct: 202 DREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTRTECLLHLGKYFRS 261

Query: 319 ------------ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
                       + + +L + I  HL +  DKF  L  M  KL+ +V      D  D++ 
Sbjct: 262 VMEGFEKDDFETVAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQ 321

Query: 367 LQEIMTGGSLYLQLLK-------------------KEKS----------------GTSAV 391
            QE++  G L    LK                   K KS                GTS V
Sbjct: 322 YQEVLLPGHLITVFLKDRLQDWLRKSKRLIVEEATKNKSFDLNDFRDFILEGQVKGTSRV 381

Query: 392 LKESD---------------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
           ++ S                 + +  ++ +  A+ + +  G V++   S L L Q  G  
Sbjct: 382 IETSSGKPCWLMRIGAQEVRKFLSKTSAYVGKAIQSMIKVGKVNS--QSGLDLPQRDGMT 439

Query: 437 IMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
           I AE +N  RY+SHFR+VHRGS F +MR++  R+L  ++WGF+CPVHTPDG PCGLLNH+
Sbjct: 440 IHAERLNFHRYISHFRSVHRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 499

Query: 497 TTNCQISEYIPS--------KVLAQIPSVLVSLGMLPLTPVIQSI-PEQALMVMLDGRIV 547
           T+ C+IS +  S        K+   + + LV  GM  L P I+   P + L V +DG IV
Sbjct: 500 TSTCRISSFYNSEGATKDFQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIV 559

Query: 548 GYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           G     IA++ +          E IP+ LE+ Y+  P    G YPGLYLFT P R LRPV
Sbjct: 560 G----SIASAKIE---------EVIPEDLEVGYV--PLSHGGAYPGLYLFTNPARFLRPV 604

Query: 608 MNL-----AAGNIEWIGTFEQVFMDI-CIT-----MKEAYPGITTHRELSKTDFLSNLAN 656
            +L        NIE IG FEQ FM+I C         + +P   TH E+  T  LS +AN
Sbjct: 605 RSLLGLSNGGPNIELIGPFEQAFMEIRCPDGGDGGRNKLFPA--THEEIHPTAILSVVAN 662

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           L P  D NQSPRNMYQCQM KQTMG      +++   K + LQTP +P  R   Y    M
Sbjct: 663 LTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRTATYSKYCM 722

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           D FP GTNAIVAV+SYTGYDMEDAMILNKS+ +RG   G IF++  I+L +      TE 
Sbjct: 723 DEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTE- 781

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
                         FF                  K    RD    A+E     DGL  +G
Sbjct: 782 --------------FF-----------------CKSNLSRD-TTAAIES----DGLPRIG 805

Query: 837 AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPNCAYIGYRI 895
             +   +  YS            +  G E   ++ V ++ + F +        A I  R 
Sbjct: 806 ENIFPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKD----RLQKANIRLRR 861

Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFT-DSGLVPDIVFNPHGFPSRMTIGFL 951
            RNP +GDKF+SR GQKG+CS  WP  D+PF+ ++G+ PD++ NPH FPSRMTI  L
Sbjct: 862 VRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAML 918



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 5/56 (8%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
            G+NY+GTE +YSGV G+ M+ +IF G V+YQRLRHMVSDK+Q +     D   R P
Sbjct: 962  GFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQP 1017


>gi|218184815|gb|EEC67242.1| hypothetical protein OsI_34174 [Oryza sativa Indica Group]
          Length = 1086

 Score =  454 bits (1168), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 309/869 (35%), Positives = 432/869 (49%), Gaps = 146/869 (16%)

Query: 169 PIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNA 228
           P+ + SK CHLR     +LI  GE   E GGYFI GG E+LVR+LI  +RN+P+ + R +
Sbjct: 46  PVEITSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIRGS 105

Query: 229 WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR--FMFSHRKSMCLLGM-MQSLH 285
           + NRG  ++D  V IR V+ D+S+    L+++ NGSAR  F    R+ +  +G+ +++L 
Sbjct: 106 FVNRGAGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLLPVGIVLKALI 165

Query: 286 EEGI-------------HTQHDSKVFFGQIFKEKLQYDLRHLNEVE-------------- 318
           +                H +    V   Q+  E+ Q  L  + ++               
Sbjct: 166 DTSDREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTRTECLLHLGKY 225

Query: 319 ---------------ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
                          + + +L + I  HL +  DKF  L  M  KL+ +V      D  D
Sbjct: 226 FRSVMEGFEKDDFETVAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIVDQTASPDKAD 285

Query: 364 SIMLQEIMTGGSLYLQLLKKE-----KSGTSAVLKESDIYAAF--------------RAS 404
           ++  QE++  G L    LK       +     +++E+    +F               ++
Sbjct: 286 ALQYQEVLLPGHLITVFLKDRLQDWLRKSKRLIVEEATKNKSFDLNDSQEVRKFLSKTSA 345

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
            +  A+ + +  G V++   S L L Q  G  I AE +N  RY+SHFR+VHRGS F +MR
Sbjct: 346 YVGKAIQSMIKVGKVNS--QSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSSFAKMR 403

Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPS 516
           ++  R+L  ++WGF+CPVHTPDG PCGLLNH+T+ C+IS +  S        K+   + +
Sbjct: 404 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMSLIA 463

Query: 517 VLVSLGMLPLTPVIQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKS 575
            LV  GM  L P I+   P + L V +DG IVG     IA++ +          E IP+ 
Sbjct: 464 RLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVG----SIASAKIE---------EVIPED 510

Query: 576 LEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL-----AAGNIEWIGTFEQVFMDI-C 629
           LE+ Y+  P    G YPGLYLFT P R LRPV +L        NIE IG FEQ FM+I C
Sbjct: 511 LEVGYV--PLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEIRC 568

Query: 630 IT-----MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
                    + +P   TH E+  T  LS +ANL P  D NQSPRNMYQCQM KQTMG   
Sbjct: 569 PDGGDGGRNKLFPA--THEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCG 626

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
              +++   K + LQTP +P  R   Y    MD FP GTNAIVAV+SYTGYDMEDAMILN
Sbjct: 627 QALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILN 686

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           KS+ +RG   G IF++  I+L +      TE               FF            
Sbjct: 687 KSAVDRGMFRGHIFQTECIDLSAKSRDNVTE---------------FF------------ 719

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK 864
                 K    RD    A+E     DGL  +G  +   +  YS            +  G 
Sbjct: 720 -----CKSNLSRD-TTAAIES----DGLPRIGENIFPNEQYYSVCNNLTGTVRPIKLKGS 769

Query: 865 EEMCVEVVRMS-SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
           E   ++ V ++ + F +        A I  R  RNP +GDKF+SR GQKG+CS  WP  D
Sbjct: 770 EPAAIDYVAVNGTNFKD----RLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDID 825

Query: 924 LPFT-DSGLVPDIVFNPHGFPSRMTIGFL 951
           +PF+ ++G+ PD++ NPH FPSRMTI  L
Sbjct: 826 MPFSANTGMRPDLIINPHAFPSRMTIAML 854



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 37/44 (84%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+NY+GTE +YSGV G+ M+ +IF G V+YQRLRHMVSDK+Q +
Sbjct: 898 GFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVR 941



 Score = 40.8 bits (94), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 52  KNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAA 111
           K+     + Q   L  L  PHI SFD+ +DEGLD  ++ I P+E      T KL  ++ A
Sbjct: 5   KSSSASKEDQYAALRELYRPHIDSFDYFIDEGLDKMLQSIRPVEI-----TSKLCHLRGA 59

Query: 112 ISEPKVPAGPVGIHFNKYY 130
            SE  +  G        Y+
Sbjct: 60  DSEKLIFHGEEATEMGGYF 78


>gi|361125151|gb|EHK97205.1| putative DNA-directed RNA polymerase I subunit RPA2 [Glarea
           lozoyensis 74030]
          Length = 991

 Score =  454 bits (1168), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 283/795 (35%), Positives = 418/795 (52%), Gaps = 132/795 (16%)

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMM--------------------- 281
           +RSV+ DE++  NVLH++ +G+  F FS +K+  L+ +M                     
Sbjct: 1   MRSVRPDETSQTNVLHYLDDGNVIFRFSWKKAEYLVPVMMVMKALVETNDREIFDGIVGN 60

Query: 282 -------------------QSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY 322
                              ++    G++T+  ++ F G+ F+  L      ++  +    
Sbjct: 61  NQSGESKKEFFFDRAELLLRTYKSYGLYTKSQTRAFLGEKFRVVLGVPAT-MSNYDCGTE 119

Query: 323 MLTNCILPHLDDY-------WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
            L   +L HL +         DKF  L  M  KL+ +V G   +D+ D++  QEI+ GG 
Sbjct: 120 FLRKIVLVHLGNANVTETQDTDKFKMLLFMIRKLYALVSGECAVDNPDAVQNQEILLGGF 179

Query: 376 LYLQLLKK-----------------------EKSGTSAVLKESDIYAAFRA-SSIESAMT 411
           LY  +LK+                       E   T   LK+  +    RA ++I   + 
Sbjct: 180 LYGMILKENLEDFVSSQIQAVLRDHIRKSPEETFSTPEFLKKFPVQILSRAGNNIGGKLE 239

Query: 412 NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQL 471
            F++TGN+ +   + L L Q SGF ++AE IN +R++SHFR VHRGS+F +++++  R+L
Sbjct: 240 YFMSTGNLVS--PTGLDLQQVSGFTVVAEKINFLRFISHFRMVHRGSFFAQLKTTTVRKL 297

Query: 472 RTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQ 531
             ++WGF+CPVHTPDG+PCGLLNHL   C+I   I S  ++ IP ++V LG +       
Sbjct: 298 LPESWGFLCPVHTPDGSPCGLLNHLAHKCKIQ--IQSIDVSSIPQLVVDLGAVSSN---S 352

Query: 532 SIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGL 590
           S  ++++++ LDGRI+G+   + A  +   LR  K+ G   +PK LEI Y+  P    G 
Sbjct: 353 SSTKESVVIQLDGRILGWCTPKQALLIGDTLRYWKVEGTHNVPKELEIGYV--PNSRGGA 410

Query: 591 YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
           YPG+Y+ +GP R +RPV  L     +++G  EQ FM I +T  E   G +TH E   T+ 
Sbjct: 411 YPGIYMSSGPSRFIRPVKYLPLDKEDFVGPQEQPFMSIAVTEPEIISGESTHVEFDPTNI 470

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           LS LAN+ P  D NQSPRNMYQCQMGKQ+MGTP    RY+   K YRLQT  +P  R   
Sbjct: 471 LSILANMTPFSDHNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKSYRLQTGQTPIVRAPL 530

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG-- 768
           ++    DNFP G NA+VAVISYTGYDM+DAMI+NKS++ERGF HG I+K   ++LE G  
Sbjct: 531 HNEYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKVKKLDLEEGDK 590

Query: 769 -YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             +    + ++    G+ ++A++                                 +  L
Sbjct: 591 SRSSKKVKKLFGFAPGAEIKAEV---------------------------------KADL 617

Query: 828 GPDGLVYVGAKLNERDPMYSYW----KESENRYVTC-------RYSGKEEMCVEVVRMSS 876
             DGL ++G  LN+ + + + W    +++   +V         RY  KE   +E VR+  
Sbjct: 618 DDDGLPHIGRLLND-NSIIAAWHTVTQDATGDFVNKDGITHYERYKEKELAFIEEVRLIG 676

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              E G+       I  R+ R+P VGDKF+SR GQKG+CS KWP  D+PFT+SG+ PD +
Sbjct: 677 --NENGTDPLRTMSIKLRVPRSPVVGDKFSSRHGQKGVCSQKWPTYDMPFTESGMQPDTI 734

Query: 937 FNPHGFPSRMTIGFL 951
            NPH FPSRMTIG  
Sbjct: 735 INPHAFPSRMTIGMF 749



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 38/47 (80%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           +++GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 787 MKAGYNYHGNEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKFQVR 833


>gi|323448349|gb|EGB04249.1| hypothetical protein AURANDRAFT_55255 [Aureococcus anophagefferens]
          Length = 1148

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 313/992 (31%), Positives = 457/992 (46%), Gaps = 166/992 (16%)

Query: 66  LTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT-----LKLNIVKAAISEPKVPAG 120
           LT   PHI SF+  +DE L + V  + P +F + G +     +   +    I  P V   
Sbjct: 5   LTPAQPHIQSFNQFMDETLAIGVTGVPPQKFVLEGPSKERLHVSFCVASVNIGHPTVLDD 64

Query: 121 PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR 180
              +      P E+R+ +  YS P +VT     DG+    FT+ +G +PIM+ S RCHL 
Sbjct: 65  DF-VSVIHLTPRESRECKVTYSAPMDVTFECCVDGRTVEIFTRSIGHLPIMVLSHRCHLW 123

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL-INNRRNHPIAIKRNAWKNRGLLFSDL 239
            L    LI   E   E+GGYFIV G EK++RLL +   RN  +AIKR A++NRG  F++ 
Sbjct: 124 GLKKNGLISSREEDFEYGGYFIVNGLEKILRLLQVVPMRNMALAIKRPAYRNRGTFFTEY 183

Query: 240 GVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-----MCLL---------------- 278
            V +R  + D+S     LH+++NG+ R   S RK      +C++                
Sbjct: 184 AVMMRCARPDQSTCTITLHYLSNGTLRLRVSIRKQEMMIPLCIILKALQPGISDRVVYAQ 243

Query: 279 ------GMMQSL-----------------HEEGIHTQHDSKVFFGQIFKEKL-QYDLRHL 314
                 G + +L                  EE  H+   +    G +F      Y     
Sbjct: 244 IIGDSGGAINALGAPQVERMLRDHAMAPYFEENDHSSKSAISILGSMFLNFFFGYFPEGT 303

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
           +   +  + +   I  H+DD+  K   L  M  KL    +     D+ DS+  QE++  G
Sbjct: 304 DNATVGQFFIRRFIAVHVDDFLSKHDVLVLMARKLCCFARNECCEDNIDSLGYQELLLPG 363

Query: 375 SLYLQLLKKEKSGTS-----------AVLKESDIYAAFR--------------ASSIESA 409
            L L     EK G S           A +   DI +  R              +  I   
Sbjct: 364 HL-LSAFVTEKLGESLTQAASHVQREARIDFDDIASKLRYEPLAYCGKTIGRYSGIICDK 422

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
           +++ LA+GN+ +  +S L L Q +GF I+AE +N+ RY SHFR+VHRG +F  M+++  R
Sbjct: 423 VSSLLASGNLVS--SSGLDLQQTTGFAIVAERLNKWRYFSHFRSVHRGQFFTTMKTTAVR 480

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA--QIPSVLVSLGMLP-- 525
           +L  +AWGF+CPVHTPDG PCGLL+HLT    I     + + A  ++  ++VSLGM P  
Sbjct: 481 KLLPEAWGFLCPVHTPDGGPCGLLSHLTARAHIICSRSNSIHAHSRLLDIIVSLGMAPNH 540

Query: 526 ----------LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE---KI 572
                     L    Q I +  L + LDG ++G     +   +   LR LK        +
Sbjct: 541 TSSCGIDCTFLVLSRQRICDSTLNICLDGVLLGSAPCLVCAKISDALRRLKANSAFRLGL 600

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA-GNIEWIGTFEQVFMDICIT 631
             +LEI ++ +       +PGLYLF+   R +RPV+       IE IG FEQ+ + I   
Sbjct: 601 DPTLEIAFIDQGPTNSSPFPGLYLFSQAARCVRPVIQCGTESKIELIGPFEQMTLQIACN 660

Query: 632 MKEAYPGI----------TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
            +    G+           TH E+  ++ LS LA+L P  D N                 
Sbjct: 661 FRGLKSGVGDTSPSGASAETHAEIDPSNMLSVLASLTPFSDFNH---------------- 704

Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
                       KLYR+ TP +P      Y T + + +  GTN++VAVISYTGYDMEDAM
Sbjct: 705 ------------KLYRILTPQAPLVCTHDYTTSNFNLYAQGTNSVVAVISYTGYDMEDAM 752

Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           I+NKS+Y+RGF HG ++K++ ++L+                            +   R R
Sbjct: 753 IINKSAYQRGFGHGVVYKNVIVDLD----------------------------LEADRRR 784

Query: 802 HMVSDKWQTKDYFGRDP--ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
                +      FG  P  + +     +G DGL  +G K+   D ++  + E   + V  
Sbjct: 785 DQSQSEPADFLLFGSPPPISTQKTTSYIGEDGLPEIGQKICHGDSLWCAFYELSCKKVIG 844

Query: 860 RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
            +   E   V+ VR      +G       A I  R  RNP +GDKF+SR GQKG+ SV W
Sbjct: 845 VHKDAETAYVDAVRFIGHANKGQKSIQRKASITLRFPRNPVIGDKFSSRHGQKGVLSVLW 904

Query: 920 PAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P  D+PFT+SG+ PDI+ NPH FPSRMTIG L
Sbjct: 905 PECDMPFTESGITPDILINPHAFPSRMTIGML 936



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GY Y+G+E +YSG  G +++ QIF GVV+YQRLRHMVSDK Q +
Sbjct: 976  AGYEYFGSEAVYSGFSGLLVRMQIFIGVVYYQRLRHMVSDKSQVR 1020


>gi|167393760|ref|XP_001740696.1| DNA-directed RNA polymerase I subunit RPA2 [Entamoeba dispar
           SAW760]
 gi|165895066|gb|EDR22870.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
           dispar SAW760]
          Length = 1106

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 477/965 (49%), Gaps = 135/965 (13%)

Query: 58  PDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT--LKLNIVKAAISEP 115
           P+K +  L  L   H  SF++ L++G +  ++ +   +      T  ++L+    +I +P
Sbjct: 4   PNKPSNELKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKP 63

Query: 116 KVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSK 175
           +    P+       +P   R     YSG   +T+    + +   T   + G +PIM+ + 
Sbjct: 64  RYNGLPL-------FPYMCRSAALTYSGKIRLTITIK-ENETSKTIEVDGGEIPIMVGTS 115

Query: 176 RCHLRN--LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRG 233
           +C + +  +TP + I   E P E GGYFI+ G E+ +R+++  + NHP+A+ R +W N+G
Sbjct: 116 KCWIGSEYITPEERINIREDPHEIGGYFIINGIERYLRMIVYAKANHPLAVIRPSWTNKG 175

Query: 234 LLFSDLGVYIRSVKRDESATNNVLHFVTNG--SARFMF-------------------SHR 272
             F+  G+ IR ++ D +   N LHF+ NG  + RF+F                   S R
Sbjct: 176 AHFTKYGIIIRCMREDITTLTNTLHFLDNGKVTLRFIFKKQEFFIPVVLLLRVYGGMSDR 235

Query: 273 KSMCLLGMMQSLHEE------------------GIHTQHDSKVFFGQIFKEKLQYDLRHL 314
           +   L+ M    +                    G++T      + G  F+  +      +
Sbjct: 236 EIFELITMNNYENSNLVNAAEMLVRRENGSPLNGLNTPEQVLSYIGSKFRLIMD-STEGV 294

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
           N++E+   +L    L HL  Y +K   L  M  KLF +V G +  +  D+ M Q ++  G
Sbjct: 295 NDIELGKRVLEEFCLVHLSSYSEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLPG 354

Query: 375 SLYLQLLKKEKSGTSA-----VLKE-SDIYAAFR--------------ASSIESAMTNFL 414
            LY  ++K+E     +     +LK+  D+    +              A S  + + +F+
Sbjct: 355 HLYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQRILSNVAKSFGTRIKSFI 414

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
           +TGN     +ST  L Q +GF I AE +N  R+ SHF +VHRG+++  M+++  R+L  +
Sbjct: 415 STGNFET--SSTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIP 534
           AWGF+CPVHTPDG PCGLLNH   +C+I+         +I  +   LGM+  +     +P
Sbjct: 473 AWGFMCPVHTPDGAPCGLLNHFAVSCRINARKHPLPEQKIIDLCTELGMV--STQFMKLP 530

Query: 535 EQALMVMLDGRIVGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLK-RPEKGMGLYP 592
              + V+L+G+++G +      S V +LR  + I   KIP +LEI Y     + G   Y 
Sbjct: 531 SIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAIYNPKIPNTLEIGYCDGYLQDG---YH 587

Query: 593 GLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT--HRELSKTDF 650
            LYL   PG+M+RPV++ A GNI  IG +EQVF+DI     ++  G+    + E+S  + 
Sbjct: 588 ALYLNNLPGQMIRPVIHRATGNIVNIGPYEQVFLDI--KCGDSIEGMNNAEYEEISALNS 645

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           LS LA L P    NQSPRNMYQCQM KQTMG P L+ +Y+   KL  L  P     +   
Sbjct: 646 LSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLLWLHYPQRSICQCAL 705

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +    + +P G NAIVAVISYTGYDMEDA+I+ KS+ ERGF HG  +K+  ++ E    
Sbjct: 706 MEPFGFNEYPTGANAIVAVISYTGYDMEDALIIKKSAIERGFGHGSQYKAYKVDFEKEGE 765

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                 M+SG+  S    +IF                                ++ L  D
Sbjct: 766 ---KNEMFSGITSS---GEIF--------------------------------DEHLDDD 787

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK----EEMCVEVVRMSSGFTEGGSVTP 886
           GL   G ++ E  P+YS+  +     +T +  GK    E   +E VR+  G      +  
Sbjct: 788 GLPRPG-EIFENSPIYSHIDK-----ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQK 841

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
             A +  R  R P +GDKF+SR GQKG  S+ +  +D+PFT+SG+ PDI+ NPH FPSRM
Sbjct: 842 --AVVRVRYNRTPVIGDKFSSRHGQKGTLSLHYQEKDMPFTESGMTPDIIINPHAFPSRM 899

Query: 947 TIGFL 951
           TI  L
Sbjct: 900 TIAML 904



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 37/47 (78%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           L+ GYNYYG+E +YSG+ G+ +Q+ I+ GVV+YQRL H V DK+Q +
Sbjct: 942 LKYGYNYYGSEPLYSGIYGNELQSDIYIGVVYYQRLVHQVKDKYQVR 988


>gi|407044307|gb|EKE42503.1| DNA-directed RNA polymerase, beta subunit domain containing protein
           [Entamoeba nuttalli P19]
          Length = 1106

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 471/965 (48%), Gaps = 135/965 (13%)

Query: 58  PDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT--LKLNIVKAAISEP 115
           P+K +  L  L   H  SF++ L++G +  ++ +   +      T  ++L+    +I +P
Sbjct: 4   PNKPSNELKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKP 63

Query: 116 KVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSK 175
                P+       +P   R     YSG   +T+    +  +  T   + G +PIM+ S 
Sbjct: 64  TYNGLPL-------FPYMCRSAALTYSGRIKLTITIK-ENDSNKTIEVDGGEIPIMVGSS 115

Query: 176 RCHLRN--LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRG 233
           +C + +   TP + I   E P E GGYFI+ G E+ +R+++  + NHP+A+ R +W N+G
Sbjct: 116 KCWIGSEYTTPEERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSWTNKG 175

Query: 234 LLFSDLGVYIRSVKRDESATNNVLHFVTNG--SARFMF-------------------SHR 272
             F+  G+ IR ++ D +   N LHF+ NG  S RF+F                   S R
Sbjct: 176 AHFTKYGIIIRCMRDDITTLTNTLHFLDNGKVSLRFIFKKQEFFIPVVLLLRVYGGMSDR 235

Query: 273 KSMCLLGMMQSLHEE------------------GIHTQHDSKVFFGQIFKEKLQYDLRHL 314
           +   L+ M    +                    G+++      + G  F+  +      +
Sbjct: 236 EIFQLITMNNYENSNLVNAAEMLVRRENGSPLNGLNSPEQVLTYIGSKFRLIMD-GTEGV 294

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
           N+ E+   +L    L HL  Y +K   L  M  KLF +V G +  +  D+ M Q ++  G
Sbjct: 295 NDTELGKRVLDEFCLVHLSSYAEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLPG 354

Query: 375 SLYLQLLKKEKSGTSA-----VLKE-SDIYAAFR--------------ASSIESAMTNFL 414
            LY  ++K+E     +     +LK+  D+    +              A S  + + +F+
Sbjct: 355 HLYQTVIKEEIQNVLSKAKLFILKDLKDVKKGSKVTEKIYLQRALSSAAKSFGTRIKSFI 414

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
           +TGN     N+T  L Q +GF I AE +N  R+ SHF +VHRG+++  M+++  R+L  +
Sbjct: 415 STGNFET--NTTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIP 534
           AWGF+CPVHTPDG PCGLLNH   +C+I+         QI  +   LGM+  +     +P
Sbjct: 473 AWGFMCPVHTPDGAPCGLLNHFAVSCRINARKHPLPDQQIIDLCTELGMV--STQFMKLP 530

Query: 535 EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV-GEKIPKSLEIVYLK-RPEKGMGLYP 592
              + V+L+G+++G +      S V +LR  + V   KIP +LEI Y     + G   Y 
Sbjct: 531 SIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAVYNPKIPNTLEIGYCDGYLQDG---YH 587

Query: 593 GLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT--HRELSKTDF 650
            LYL   PG+M+RPV++ A GNI  IG +EQVF+DI     ++  G+    + E+S  + 
Sbjct: 588 ALYLNDLPGQMIRPVIHRATGNIVNIGPYEQVFLDI--KCGDSIEGMNNAEYEEISALNS 645

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           LS LA L P    NQSPRNMYQCQM KQTMG P L+ +Y+   KL  L  P     +   
Sbjct: 646 LSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLLWLHYPQRSICQCAL 705

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +    + +P G NA+VAVISYTGYDMEDA+I+ KS+ ERGF HG  +K+  ++ E    
Sbjct: 706 MEPFGFNEYPTGANAVVAVISYTGYDMEDALIIKKSAIERGFGHGSQYKAYKVDFEKEGE 765

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                 M+SG   S                                    +  ++ L  D
Sbjct: 766 ---KNEMFSGTTSS-----------------------------------GEVFDEHLDDD 787

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK----EEMCVEVVRMSSGFTEGGSVTP 886
           GL   G ++ E  P+YS+  +     +T +  GK    E   +E VR+  G      +  
Sbjct: 788 GLPRPG-EVFENSPIYSHIDK-----ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQK 841

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
             A +  R  R P +GDKF+SR GQKG  SV +  +D+PFT+SG+ PDI+ NPH FPSRM
Sbjct: 842 --AVVRVRYNRTPVIGDKFSSRHGQKGTLSVHYQEKDMPFTESGMTPDIIINPHAFPSRM 899

Query: 947 TIGFL 951
           TI  L
Sbjct: 900 TIAML 904



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 37/47 (78%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           L+ GYNYYG+E +YSG+ G+ +Q+ I+ G+V+YQRL H V DK+Q +
Sbjct: 942 LKYGYNYYGSEPLYSGIYGNELQSDIYIGIVYYQRLVHQVKDKYQVR 988


>gi|67473159|ref|XP_652347.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica
           HM-1:IMSS]
 gi|56469186|gb|EAL46961.1| DNA-directed RNA polymerase subunit, putative [Entamoeba
           histolytica HM-1:IMSS]
 gi|449709519|gb|EMD48770.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
           histolytica KU27]
          Length = 1106

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 309/965 (32%), Positives = 471/965 (48%), Gaps = 135/965 (13%)

Query: 58  PDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT--LKLNIVKAAISEP 115
           P+K +  L  L   H  SF++ L++G +  ++ +   +      T  ++L+    +I +P
Sbjct: 4   PNKPSNELKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKP 63

Query: 116 KVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSK 175
                P+       +P   R     YSG   +T+    +  +  T   + G +PIM+ S 
Sbjct: 64  TYNGLPL-------FPYMCRSAALTYSGRIKLTITIK-ENDSNKTIEVDGGEIPIMVGSS 115

Query: 176 RCHLRN--LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRG 233
           +C + +   TP + I   E P E GGYFI+ G E+ +R+++  + NHP+A+ R +W N+G
Sbjct: 116 KCWIGSEYTTPEERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSWTNKG 175

Query: 234 LLFSDLGVYIRSVKRDESATNNVLHFVTNG--SARFMF-------------------SHR 272
             F+  G+ IR ++ D +   N LHF+ NG  S RF+F                   S R
Sbjct: 176 AHFTKYGIIIRCMRDDITTLTNTLHFLDNGKVSLRFIFKKQEFFIPVVLLLRVYGGMSDR 235

Query: 273 KSMCLLGMMQSLHEE------------------GIHTQHDSKVFFGQIFKEKLQYDLRHL 314
           +   L+ M    +                    G+++      + G  F+  +      +
Sbjct: 236 EIFQLITMNNYENSNLVNAAEMLVRRENGSPLNGLNSPEQVLTYIGSKFRLIMD-GTEGV 294

Query: 315 NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
           N+ E+   +L    L HL  Y +K   L  M  KLF +V G +  +  D+ M Q ++  G
Sbjct: 295 NDTELGKRVLDEFCLVHLSSYAEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLPG 354

Query: 375 SLYLQLLKKEKSGTSA-----VLKE-SDIYAAFR--------------ASSIESAMTNFL 414
            LY  ++K+E     +     +LK+  D+    +              A S  + + +F+
Sbjct: 355 HLYQTVIKEEIQNVLSKARLFILKDLKDVKKGSKVTEKIYLQRALSSAAKSFGTRIKSFI 414

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
           +TGN     N+T  L Q +GF I AE +N  R+ SHF +VHRG+++  M+++  R+L  +
Sbjct: 415 STGNFET--NTTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIP 534
           AWGF+CPVHTPDG PCGLLNH   +C+I+         QI  +   LGM+  +     +P
Sbjct: 473 AWGFMCPVHTPDGAPCGLLNHFAVSCRINARKHPLPDQQIIDLCTELGMV--STQFMKLP 530

Query: 535 EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV-GEKIPKSLEIVYLK-RPEKGMGLYP 592
              + V+L+G+++G +      S V +LR  + V   KIP +LEI Y     + G   Y 
Sbjct: 531 SIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAVYNPKIPNTLEIGYCDGYLQDG---YH 587

Query: 593 GLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT--HRELSKTDF 650
            LYL   PG+M+RPV++ A GNI  IG +EQVF+DI     ++  G+    + E+S  + 
Sbjct: 588 ALYLNDLPGQMIRPVIHRATGNIVNIGPYEQVFLDI--KCGDSIEGMNNAEYEEISALNS 645

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           LS LA L P    NQSPRNMYQCQM KQTMG P L+ +Y+   KL  L  P     +   
Sbjct: 646 LSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLLWLHYPQRSICQCAL 705

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +    + +P G NA+VAVISYTGYDMEDA+I+ KS+ ERGF HG  +K+  ++ E    
Sbjct: 706 MEPFGFNEYPTGANAVVAVISYTGYDMEDALIIKKSAIERGFGHGSQYKAYKVDFEKEGE 765

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                 M+SG   S                                    +  ++ L  D
Sbjct: 766 ---KNEMFSGTTSS-----------------------------------GEVFDEHLDDD 787

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK----EEMCVEVVRMSSGFTEGGSVTP 886
           GL   G ++ E  P+YS+  +     +T +  GK    E   +E VR+  G      +  
Sbjct: 788 GLPRPG-EVFENSPIYSHIDK-----ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQK 841

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
             A +  R  R P +GDKF+SR GQKG  SV +  +D+PFT+SG+ PDI+ NPH FPSRM
Sbjct: 842 --AVVRVRYNRTPVIGDKFSSRHGQKGTLSVHYQEKDMPFTESGMTPDIIINPHAFPSRM 899

Query: 947 TIGFL 951
           TI  L
Sbjct: 900 TIAML 904



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 37/47 (78%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           L+ GYNYYG+E +YSG+ G+ +Q+ I+ G+V+YQRL H V DK+Q +
Sbjct: 942 LKYGYNYYGSEPLYSGIYGNELQSDIYIGIVYYQRLVHQVKDKYQVR 988


>gi|440296696|gb|ELP89482.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
           invadens IP1]
          Length = 1100

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 304/953 (31%), Positives = 450/953 (47%), Gaps = 127/953 (13%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF--EIYGKTLKLNIVKAAISEPKVPAGPV 122
           LL L   H+ SFD+ LDEG +  ++ I P+        + + ++I    I +P     P+
Sbjct: 10  LLELTRAHVESFDYFLDEGKNAILKTIPPMHIIDPEKNEIMTVSIKTITIDKPMFNGKPL 69

Query: 123 GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN- 181
                  YP   R     Y G  ++  +   +G     F    G +P+ML S  C L   
Sbjct: 70  -------YPFMCRTAGLSYLGALHIVFSVIQNG-IENVFNVNAGEIPMMLCSDNCWLGTD 121

Query: 182 -LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLG 240
             TP   I+  E P E GGYFI+ G EK +R+++  + NHPIA+ R +W+ +G  F+  G
Sbjct: 122 FRTPQDRIDIREDPHEIGGYFIIHGVEKYLRMILYAKPNHPIAVARPSWEGKGAHFTKYG 181

Query: 241 VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS------MCLLGMMQSLHEEGI----- 289
           V IR ++ D +   N +H++ NG     F +RK       + LL +   + +  I     
Sbjct: 182 VMIRCMRNDITTLTNTMHYLDNGKVCVRFIYRKQEFFIPIILLLRVYTGMSDREIFELVT 241

Query: 290 ----------------------------HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICD 321
                                       +T      F GQ F+  +      L + +   
Sbjct: 242 MGNKENSNLVNAAELLVRRESGSILNTLNTTEQILAFIGQKFR-VVMVTGAELTDAQAGK 300

Query: 322 YMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL 381
           Y+L   +  HLD Y  K      M  KLF  V G +  +S D+ M Q I+  G LY  + 
Sbjct: 301 YILDEFVFVHLDSYAQKADLSIFMLQKLFAFVNGEIDEESVDTPMTQSILLAGHLYQTVF 360

Query: 382 KKEKSG-----------------TSAVLKESDIYAAF---RASSIESAMTNFLATGNVSA 421
           K E +                    + L E  + +      A+ +   M  F+ATGN + 
Sbjct: 361 KDELNSCLMRIRMMVLKDWHNERKRSKLTEKGVQSRIIESGANGLSKRMQTFIATGNFAP 420

Query: 422 GKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
              + LQ  Q +GF I AE +N  R+ SHF +VHRG+++  M+++  R+L  ++WGF+CP
Sbjct: 421 TGTNDLQ--QENGFSITAERLNHSRFSSHFVSVHRGAFYTTMKTTAIRKLVPESWGFMCP 478

Query: 482 VHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVM 541
           VHTPDG PCGLLNHL  +C+I+             +   LGM  ++    ++P   + V+
Sbjct: 479 VHTPDGAPCGLLNHLACSCRINARFHPLPDETTIRLCTQLGM--ISSQFMTLPSIYIPVL 536

Query: 542 LDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLK-RPEKGMGLYPGLYLFTG 599
           ++G+++G +      + V KLR  + +    +P +LEI Y       G   Y  LYL   
Sbjct: 537 MNGKVIGKVAPHDINAFVQKLRYERAMSNPMLPNTLEIGYCDGYLHDG---YHALYLNDM 593

Query: 600 PGRMLRPVMNLAAGNIEWIGTFEQVFMDI-CITMKEAYPGITTHRELSKTDFLSNLANLI 658
           PG+M+RP+ +   G   +IG +EQVF+DI C    E     + + E+S+ + LS LA  I
Sbjct: 594 PGQMVRPIRHRLTGKTVYIGPYEQVFLDIKCGNAIEGMDK-SEYEEISEMNSLSLLATTI 652

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P    NQSPRNMYQCQM KQTMG P + ++Y+   KL  L  P     +    +    + 
Sbjct: 653 PFCHMNQSPRNMYQCQMAKQTMGFPMMAYKYRSDSKLLLLHYPQRSLCQCTLMEPFGFNE 712

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
            P GTNA+VAVISYTGYDMEDA+I+ K+S ERGF HG  +K+  I+L             
Sbjct: 713 LPTGTNAVVAVISYTGYDMEDALIIKKTSIERGFGHGSQYKAYKIDL------------- 759

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK 838
                                       K QT+   G +P  +  ++ L  DGL   G +
Sbjct: 760 ---------------------------TKEQTQMISGLNPKGELYDEHLDFDGLPRPG-E 791

Query: 839 LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRN 898
           + E  P+YS   +      T +  G++     V  + +   E G      A +  R  R 
Sbjct: 792 IFENSPIYSEIDKITGVVKTKKLMGEKGYIESVTIVGNDKKEAGQ---QQAVVRVRYNRT 848

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P +GDKF+SR GQKG  SV +  +D+PFT+SG+ PDI+ NPH FPSRMTIG L
Sbjct: 849 PVIGDKFSSRHGQKGTLSVHYAEKDMPFTESGMTPDILINPHAFPSRMTIGML 901



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L+ GYNYYG+E MYSG+ G+ MQ  I+ GVV+YQRL H V DK+Q +     +P  +   
Sbjct: 939  LKYGYNYYGSEPMYSGITGTEMQTDIYIGVVYYQRLVHQVKDKYQVRSTGPVNPLTQQPV 998

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSS 876
                  G + +G    ERD +  +   +  E+R++ C       +C +   M S
Sbjct: 999  KGRKRGGGIRLGEM--ERDSLLGHGTAALVEDRFLQCSDKSYHYVCKKCGSMVS 1050


>gi|340504398|gb|EGR30844.1| hypothetical protein IMG5_122450 [Ichthyophthirius multifiliis]
          Length = 864

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 262/712 (36%), Positives = 389/712 (54%), Gaps = 68/712 (9%)

Query: 112 ISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIM 171
           I+ P   +  VG   +K  P E R +R  YS P   T+  + D  +       +G VPI+
Sbjct: 10  INYPTRQSSGVG-EDSKLMPEECRISRKTYSAPLLATICRTIDEGSVEKIRLSLGEVPIV 68

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           + S  CHL  L   QL+   E  +E+GGYFIV G+EKLVR+LI  +RN+PIA  R ++ N
Sbjct: 69  VMSDHCHLSKLNSRQLVNAHEDCNEFGGYFIVNGNEKLVRMLIMQKRNYPIAFLRPSYVN 128

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL---------LGMMQ 282
           RG  ++   V ++ V+ D  A +  LH++++G       HRK   L         LG   
Sbjct: 129 RGPNYTQYAVQMKCVREDLYAKSITLHYISDGQVFLRLLHRKQEFLIPIIVILKCLGDFS 188

Query: 283 SLH--------EEG-------------------IHTQHDSKVFFGQIFKEKLQYDLRHLN 315
            LH        + G                   ++++ +   + G+ F+  L  +   +N
Sbjct: 189 DLHIYNKLVKGQSGKSSLSDRVEVLIRGAKTMNLNSKQECLAYLGKSFRVVLNINNNEVN 248

Query: 316 EVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
           + E+ +  +   I  HL +  DKF  L  M  KL+ +V   +  ++ DS+  QE++  G 
Sbjct: 249 DKEVGEIFINENICVHLKNNMDKFNILCFMVLKLYGLVSDEISPENLDSLQNQEVLLPGH 308

Query: 376 LYLQLLKKE-------------KSGTSAVLKESDIYAAFRASSIE------SAMTNFLAT 416
           LY  +LK++             K G      +  ++ ++   +IE      + +  FL+T
Sbjct: 309 LYTMILKEKIEEMLQGIRQKVFKDGQKPEEAQKTLHVSYIKKAIEIQGSIGTKIEYFLST 368

Query: 417 GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
           GN+ +   + L LMQ  GF I+A+ +N MR++SHFR+VHRG+YF EM+++  R+L  + W
Sbjct: 369 GNLKS--QTGLDLMQNKGFAIIADKLNNMRFLSHFRSVHRGAYFTEMKTTTVRKLLPENW 426

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQISE---YIPSKVLAQIPSVLVSLGMLPLTPVIQSI 533
           GFICPVHTPDG PCGLLNH+   C+      Y  +K +  +  +   LGM P+   +  I
Sbjct: 427 GFICPVHTPDGAPCGLLNHIAMTCKPLTRPGYDKNKHI-DLQKLCCQLGMNPIVNDLSII 485

Query: 534 -PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK---IPKSLEIVYLKRP-EKGM 588
            P   L V+LDG+++GYI ++ A      L+ LKIV ++   +   LEI  +++  +   
Sbjct: 486 YPPNMLTVILDGKVIGYIENECAEQFCQSLKYLKIVQDQERLVSADLEIGLIRKEIQDKQ 545

Query: 589 GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKT 648
            L+ G+YL+T  GR +RPV +L     EWI  FEQV + I  T +E     T ++ELS +
Sbjct: 546 ILFAGVYLYTNEGRFVRPVRHLHLNQNEWISPFEQVHLSIACT-QEDIRNDTEYQELSPS 604

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
             LS L + IP  + NQSPRNMYQCQM KQTMGTP  N+ Y+   K YRL +P  P  + 
Sbjct: 605 YILSILPSQIPFLNYNQSPRNMYQCQMAKQTMGTPMHNFPYRFDNKSYRLMSPQLPMVKG 664

Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
            + +   + ++P GTNA+VAVISYTGYDMEDAMILNKSSYERGF HGC++K+
Sbjct: 665 QNPEEYGLADYPSGTNAVVAVISYTGYDMEDAMILNKSSYERGFGHGCVYKN 716


>gi|449019344|dbj|BAM82746.1| RNA polymerase I second largest subunit [Cyanidioschyzon merolae
           strain 10D]
          Length = 1175

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 322/1021 (31%), Positives = 473/1021 (46%), Gaps = 209/1021 (20%)

Query: 62  NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE---------IYGKTLKLNIVKAAI 112
            E LL +  PH+ SF+  + +GL   + DI P+  E         +  + L++      +
Sbjct: 21  TETLLQILEPHLQSFNSAITQGLQQVLHDIEPLILEGTVQQAADHVSKERLEVWFEDLRL 80

Query: 113 SEPKVPAG------------------PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
            +P++P                     +G+  +   P + R  +S Y+G  +V + W   
Sbjct: 81  QKPRLPRARALQSTGNLRARGFADELELGLDPSAILPHQCRALQSSYTGSLSVVLCWRAT 140

Query: 155 GKAGGTFTKE------------------------VGRVPIMLKSKRCHLRNLTPAQLIER 190
             + G + K+                        +G VPI++ SK CHL  L+P + +  
Sbjct: 141 RISHGCYRKDSTLCNTALWTNGSYAEDVYRSERHLGEVPILVGSKLCHLDGLSPNERVAL 200

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E   ++GGYFIV G EKL+R++I  R NH + I R+A   RG  F+     IR  + D 
Sbjct: 201 HEEEYDYGGYFIVNGVEKLLRMVIMPRANHVMVIARDANVRRGEHFTRFSAMIRCRRADR 260

Query: 251 -SATNNVLHFVTNGSARFMFSHRKSMCLLGM----------------------------- 280
                N LH++  G  R  FS ++   LL +                             
Sbjct: 261 VRVVTNHLHYLQTGLLRLRFSVKRQEYLLPLGLVLKALYDLADRELFLLLTMPSGCCGTN 320

Query: 281 ---------------MQSLH--EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICD-Y 322
                          ++ LH    G  TQH +  + G  F+      L   +  E C  +
Sbjct: 321 ADENLRYIRERALMTVRELHVLTGGEGTQHAALSYLGARFRCLFPEYLSSDDSDERCGAF 380

Query: 323 MLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
           +L   +L HLDD   K   L++M+ KL H + G +  D  DS+  QE++  G L+L  L+
Sbjct: 381 ILRRYVLIHLDDPLQKLELLAYMSRKLLHYMTGCLAEDDPDSLANQELLLPGQLWLLFLQ 440

Query: 383 KE-KSGTSAVLKESDIYAAFRASS---------------------IESAMTNFLATGNVS 420
           ++ +    A+  E       RA+                      +   M + L+TG  S
Sbjct: 441 EKLQDALFALRDEISRQLTQRANQGSLLDPDFVRKCVSKPRSGIRVGERMLHLLSTGTAS 500

Query: 421 AGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFIC 480
               +  +L+Q SG+ I+A+ IN  R++SHF +VHRG YF  +R+SE R+L+ + WGFIC
Sbjct: 501 LRDGA--ELLQTSGYSIIADRINFQRFLSHFYSVHRGQYFLNLRTSESRKLKPETWGFIC 558

Query: 481 PVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT-PVIQSI-----P 534
           PVHTPDG PCG+LNHLT  C++      +VL +   +   L  LPL  P+  +      P
Sbjct: 559 PVHTPDGAPCGILNHLTRMCRVVA-DQQQVLQEQKRIEWILETLPLEHPLAHNDALLMPP 617

Query: 535 EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGL 594
             A  V++DGRI GY+   +   L   LR  K+  E  P++ EIV ++ P     L+P +
Sbjct: 618 ANARPVLVDGRIRGYVHGDVP--LGKLLRQQKL--EHFPQT-EIVDVEIPR----LFPSV 668

Query: 595 YLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM--DICITMKEAYPG-ITTHRELSKTDFL 651
            +F+ P R++R V N+    IEWIGT EQ+FM  D+C +   +  G    HRELS T+  
Sbjct: 669 MVFSTPSRLMRSVWNMPQAGIEWIGTMEQLFMPVDLCKSQSMSRAGNAAIHRELSATNIF 728

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
           S LA+ IP  + NQSPRN+YQCQMGKQ MG P  +W  +   K YRL TP  P  +    
Sbjct: 729 SLLASFIPFSNMNQSPRNIYQCQMGKQAMGVPFHDWDRRFDTKSYRLLTPQQPLVQNRSE 788

Query: 712 DTLDMDN-FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
                   F    NA+VAVISYTGYDMED M++N++S +RG AHG I+   F++L+    
Sbjct: 789 AQAGWSKVFGSSFNAVVAVISYTGYDMEDGMVINRASLDRGLAHGAIYGCEFVDLDQ--- 845

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                                  V    R              F R P   A+ +++ P 
Sbjct: 846 ---------------------LNVAKDAR--------------FSRLP---AVGERMTPG 867

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
            ++Y    +  R P    ++ SE  YV      + +  V                     
Sbjct: 868 SVLY---SIQGRRP--HLYRNSETSYVDAVLLAENQRRVA-------------------- 902

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
           I  R  R P +GDKFASR GQKG+ S  WPAED+P+T  G+VPDI+FNP+GFPSRMTIG 
Sbjct: 903 IRTRTPRRPVIGDKFASRHGQKGVLSAIWPAEDMPYTSDGIVPDILFNPNGFPSRMTIGM 962

Query: 951 L 951
           +
Sbjct: 963 I 963



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 717  DNFP--MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC---------IFKSMFIEL 765
            + FP  M    IV  I+     +  A+ ++ S++ER                F  +   L
Sbjct: 952  NGFPSRMTIGMIVESIAGKAAAVHGAVPIDASAFERETEDASDRSNEPPHDFFGRLL--L 1009

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
             +GY Y+GTETMY+G  G     QIF GV+ +QRLRH ++DK+Q +
Sbjct: 1010 NTGYTYHGTETMYNGYTGEPFVVQIFIGVIAWQRLRHHIADKFQVR 1055


>gi|149234772|ref|XP_001523265.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146453054|gb|EDK47310.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 817

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/630 (40%), Positives = 352/630 (55%), Gaps = 69/630 (10%)

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAF 401
           M  KL+ +V      D+ D+   QE++ GG LY  ++K++        K   +SD+    
Sbjct: 5   MIRKLYSLVARDCAPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNFKLQVQSDLNRGV 64

Query: 402 RAS----------------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
             +                +I   +  FL+TGN+ +   S L L Q SG+ ++AE IN  
Sbjct: 65  GVNFENQKYMTRVFSRINENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFH 122

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
           R++SHFR VHRG++F E++++  R+L  ++WGF+CPVHTPDG+PCGLLNHL+  C I+  
Sbjct: 123 RFISHFRMVHRGAFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCVIA-- 180

Query: 506 IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
             +  ++Q+P  L  LG+LP      +      +V LDG+IVG+   +    +   LR  
Sbjct: 181 TTASDVSQVPKALTQLGVLPANAY--AAGPDLCVVQLDGKIVGWTTHEQGKIIADTLRFW 238

Query: 566 KIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV 624
           K+ G   +P  LEI Y+  P    G YPGLY+F G  RM+RPV  L  G  + +G FEQV
Sbjct: 239 KVEGSHGLPLDLEIGYV--PPSVNGQYPGLYIFGGHSRMMRPVKYLPLGKEDIVGPFEQV 296

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
           +M++ +T +E    + +H E S T+ LS LANL P  D NQSPRNMYQCQMGKQTMGTP 
Sbjct: 297 YMNVAVTPEEIENNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPG 356

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
               ++   KLYRLQT  +P  +   YD   MDNFP G NAIVAVISYTGYDM+DAMI+N
Sbjct: 357 TALVHRSDNKLYRLQTGQTPIVKANLYDEYGMDNFPNGMNAIVAVISYTGYDMDDAMIIN 416

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           KSS ERGF +G ++K   ++L             S   G  +     FG           
Sbjct: 417 KSSDERGFGYGTVYKVEKVDLGQ-----------SRRKGDPISQHFGFG----------- 454

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK 864
            D+W            +  ++KL  DGL  +G K+ E DP+ +Y+ ++  +     Y   
Sbjct: 455 DDEWP-----------ETWKEKLDDDGLPLIGVKVEEGDPIVAYFDDTLGKTKVKTYHSS 503

Query: 865 EEMCVEVVRM---SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
           E   +E V++    +G  E   +T     I YRI R P +GDKF+SR GQKG+ S KWP 
Sbjct: 504 EPAYIEEVKLLGDDAGDKEAQQIT-----IKYRITRQPQIGDKFSSRHGQKGVLSRKWPQ 558

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            D+PFT+SG+ PD++ NPH FPSRMTIG  
Sbjct: 559 IDMPFTESGMQPDVIINPHAFPSRMTIGMF 588



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 36/47 (76%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           L++GYN++G E MYSG  G  ++  I+ G V+YQRLRHMV+DK+Q +
Sbjct: 626 LKAGYNFHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 672


>gi|189192000|ref|XP_001932339.1| DNA-directed RNA polymerase I polypeptide 2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187973945|gb|EDU41444.1| DNA-directed RNA polymerase I polypeptide 2 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1178

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 313/1009 (31%), Positives = 476/1009 (47%), Gaps = 200/1009 (19%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEGLDLA--VEDI------------APIEFE 97
           F  PP  +  F  L    APH  SF+ +   G  L+  ++DI            AP E  
Sbjct: 27  FRNPPRDETAFPMLAEAVAPHTESFNAIFCAGGQLSEGIKDIGTKIFLDGNPYAAPEEAG 86

Query: 98  IYGKTLKLNIVKAAISEPKVPA-GPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              + L L I    + +P +P+   V +      P+EAR+  + Y G     + W  +  
Sbjct: 87  ARNR-LSLRIQDVFLDKPALPSTNKVALKNRNILPSEARERHATYRGKMRARLQWRINQG 145

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+S RCHL  L+PA L++  E  +E GGYFIV G+EK++R L  N
Sbjct: 146 DWQEEMADLGSVPIMLRSNRCHLEGLSPAALVKSKEESEECGGYFIVNGNEKMIRPLQVN 205

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-- 274
           RRN+P+AIKR A+ NRG  ++  G+ IRS++ D+++  N LH++ +G+  F FS RKS  
Sbjct: 206 RRNYPMAIKRGAFTNRGPGYTQYGIQIRSMRPDQTSQTNALHYLDDGNVNFRFSWRKSEY 265

Query: 275 -MCLLGMMQSLHEE--------------------------------------GIHTQHDS 295
            + L+ +M++L E                                       G+HT+  +
Sbjct: 266 LVPLVMIMKALVETNDREIFEGLVGAAGSKGLREKQFVSDRVELLLRTFKVYGLHTKAKT 325

Query: 296 KVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-------DYWDKFLCLSHMTCK 348
           + F GQ FK  LQ     +++ +     L   +LPHL           DKF  L  MT K
Sbjct: 326 RAFLGQKFKVVLQLP-PDISDFDGGTEFLRKIVLPHLGCVAVTPAQDADKFRMLLFMTRK 384

Query: 349 LFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------------------ 384
           L+ +V+G   +D+ D++  QEI+ GG LY  +LK+                         
Sbjct: 385 LYSLVEGECTVDNPDAVQSQEILLGGQLYGMILKERLEEWLNSFQLALREWGRKTEYKPI 444

Query: 385 ------KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
                 +  TS +L+ +        ++I  AM+ FL          S L + Q SG+ ++
Sbjct: 445 VSDDFRRDWTSKILRRT-------KNNIGDAMSYFL----------SGLDMQQTSGYTVV 487

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           A       + +   ++        + S +PR              + +  P    +  T+
Sbjct: 488 AGLFPTSVWYTEVPSL--------LSSRQPR--------------SENFYPSLGGSIATS 525

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
           N  +S          IP ++  LG   ++    +  +++++V LDGR++G+   + A  +
Sbjct: 526 NVDVSA---------IPKLVAKLG---VSRDSSASLDESVVVQLDGRVLGFCSPKQAKVV 573

Query: 559 VPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEW 617
              LR  K+ G   +P  LEI Y+  P    G YPG+Y+F+   RM RPV  L    +++
Sbjct: 574 SDTLRYWKVEGSHGVPLELEIGYV--PNSNNGQYPGVYMFSQSARMYRPVKYLPLNKLDY 631

Query: 618 IGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQ-CQMG 676
           +G FEQ +M I  T  E   G +TH E   T+ LS ++N  P  D NQSPRN+Y+ CQMG
Sbjct: 632 VGPFEQPYMSISCTDAEIVSGDSTHVEFDPTNILSIVSNQTPFSDYNQSPRNLYRSCQMG 691

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ+MGTP  +  Y+   K YRLQT  +P  RP  ++   +DNFP G NA+VAVISYTGYD
Sbjct: 692 KQSMGTPATSLDYRTDNKAYRLQTGQTPIARPPLHNKYGLDNFPNGMNAVVAVISYTGYD 751

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           M+D  +L++ ++ERGF HG ++K+  ++LE G                            
Sbjct: 752 MDDGFVLSRGAHERGFGHGTVYKTKILDLEEGS--------------------------- 784

Query: 797 YQRLRHMVSDKWQTKDYFGRDP---ANKALEDKLGPDGLVYVGAKLNERDPMYSY----- 848
               R   S +  TK  FG  P        ++ L  DGL  VG  L   D + ++     
Sbjct: 785 ----RKNRSKRTVTK-LFGFAPDSLVESKPKETLDADGLPRVGTMLRSGDVIAAWHTVSY 839

Query: 849 ------WKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
                 +   + +    +Y   E   VE VR+    +E G+       I  RI R+P VG
Sbjct: 840 DTAMDDYTNKDGQTQFFKYKEDEVAYVEQVRIIG--SEDGTQPCQKLSIKLRIPRSPIVG 897

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG+ S K+   D+PF+++G+ PD++ NPH FPSRMTIG  
Sbjct: 898 DKFSSRHGQKGVVSQKFSVADMPFSETGIQPDVIINPHAFPSRMTIGMF 946



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GYNYYG E MYSG  G  + A I+ GVV+YQRLRHM++DK+Q +     +P      
Sbjct: 984  MKAGYNYYGNEPMYSGFTGEELHADIYIGVVYYQRLRHMINDKFQVRTTGPVNPTTGQPV 1043

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
                  G + VG    ERD + ++      ++R + C    K  +C
Sbjct: 1044 KGRKKGGGIRVGEM--ERDALIAHGTAFLLQDRMMNCSDYTKAAIC 1087


>gi|313235073|emb|CBY10732.1| unnamed protein product [Oikopleura dioica]
          Length = 887

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 289/909 (31%), Positives = 449/909 (49%), Gaps = 112/909 (12%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           +S+PS+K  +  N+GK P+ +N+ L  +   H+ SFD+ L+EGL      +AP EFE+  
Sbjct: 13  VSSPSIKQTSRVNYGKLPEDKNKQLKFISDTHVQSFDWFLEEGLPNIPNSVAPYEFEMEA 72

Query: 101 KT----LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWS--WD 154
                  +L +    + +P + +  V     + +P+E RQ ++ Y+ P +VT        
Sbjct: 73  NNDQMRFRLEVEHIEVGQPTLESSIV-CKDRRLFPSECRQKKTDYTAPVHVTFNLINLSS 131

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
           G+      K++ ++P+M+ S +CHLR L+P +L+ R E   E GGYFI  G+EK++RLL 
Sbjct: 132 GETQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARKEDHFEIGGYFIASGNEKVIRLLN 191

Query: 215 NNR--RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            NR  RN P+ ++RN WK R   ++D G+ IR +   E  +N  +H         +F  +
Sbjct: 192 MNRTRRNFPLGLRRNGWKRRREGYTDAGLMIRCMDNWERTSNMNVHVTKTNEMEVVFYIQ 251

Query: 273 KSMCLLGMMQ-----------SLHEEGIHT-----QHDSKV------------------- 297
           K +  L MM             ++ E + T      +DS V                   
Sbjct: 252 KQLFHLPMMTVVRALTSWTDLEIYREFMQTMSDEPNYDSAVKRMLKKLVNADNMVKRNDA 311

Query: 298 -----FFGQIFKEKLQYDL--RHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLF 350
                F GQ F+    +D+     ++VE     L    L +L++  DK    + M  K F
Sbjct: 312 VKLSKFLGQSFR---IFDICPAWKSDVEAGQAFLKRYCLIYLNNDEDKVRAFALMARKAF 368

Query: 351 HVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL--------------------KKEKSGTSA 390
            +       D  DS    +++  G L+  +                     K+ + G   
Sbjct: 369 RISHNTCATDDIDSPESHDVLLPGHLFQSMTLEFFESYQRSVSMIMAKEYSKQLEKGNDE 428

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSH 450
           V +    +A  +  ++       +ATGN+    N  L + Q +G V+ AE IN  R+ SH
Sbjct: 429 VGQNMLSFAINKIGNMNQHFKYLIATGNLKT--NDGLGMQQLAGIVVGAEKINFARFYSH 486

Query: 451 FRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
           FR +HRG++F EMR++ PR+L T AWGFICPVHTPDG PCGLLNHL    +I+  +  + 
Sbjct: 487 FRCIHRGAFFMEMRATSPRKLSTAAWGFICPVHTPDGPPCGLLNHLAHTVRIN--VKREN 544

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPK-LRMLKIVG 569
            A++  +L+ +G+ P +       E  + V++DG+ +G+I +      V K LR LK   
Sbjct: 545 TAKLEELLLEIGVKPCSIKAN---EFDIPVIIDGKQIGWIANGWRAQAVEKYLRRLKTSS 601

Query: 570 -EKIPKSLEIVYLKRPE-KGMG-LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFM 626
            +++P +LEIV+   PE KG   ++PG+ L T P RM RP++NL    IE IG  EQV++
Sbjct: 602 SDRVPDTLEIVHCPAPENKGEAVMFPGINLLTEPARMYRPLLNLREVKIEMIGIMEQVWL 661

Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
            + +  KE++  +T ++EL     LS LA + P  + N   R + QCQM KQT G P   
Sbjct: 662 HVTVNQKESHE-LTEYQELYPAALLSELACMSPFSNMNAGARVILQCQMAKQTFGWPSYT 720

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
             Y+   K+YR+ TP  P  R   +D+  MD++P+GTN ++AVISYTGYD+EDA  ++K 
Sbjct: 721 LNYRSDNKMYRILTPQEPLVRSHLHDSWGMDDYPLGTNVMIAVISYTGYDLEDATCVSKM 780

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           S ERG  +G I+K+  ++L+      G     SG                   LR    D
Sbjct: 781 SRERGMMYGTIYKTKMVDLQDTAQSMGYR---SG-------------------LRLGCRD 818

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRY-SGKE 865
           ++   +        K   DKL  DGL + G     +D  Y Y+ E E +Y   +Y S  E
Sbjct: 819 RFDPNEL---KAYRKIAGDKLDIDGLPFPGGIFTYQDAYYCYYNEHEQKYSVGKYDSHAE 875

Query: 866 EMCVEVVRM 874
           +  VE VR+
Sbjct: 876 DAIVESVRV 884


>gi|110289329|gb|ABB47823.2| DNA-directed RNA polymerase, beta subunit family protein, expressed
           [Oryza sativa Japonica Group]
          Length = 1044

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 303/871 (34%), Positives = 421/871 (48%), Gaps = 177/871 (20%)

Query: 198 GGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVL 257
           GGYFI GG E+LVR+LI  +RN+P+ + R ++ NRG  ++D  V IR V+ D+S+    L
Sbjct: 2   GGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIKL 61

Query: 258 HFVTNGSAR--FMFSHRKSMCLLGM-MQSLHEEGI-------------HTQHDSKVFFGQ 301
           +++ NGSAR  F    R+ +  +G+ +++L +                H +    V   Q
Sbjct: 62  YYLLNGSARLGFWLGGREFLLPVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVSTQ 121

Query: 302 IFKEKLQYDLRHLNEVE-----------------------------ICDYMLTNCILPHL 332
           +  E+ Q  L  + ++                              + + +L + I  HL
Sbjct: 122 LIGERAQIILDEVRDLSLFTRTECLLHLGKYFRSVMEGFEKDDFETVAEAVLKDYIFVHL 181

Query: 333 DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------- 382
            +  DKF  L  M  KL+ +V      D  D++  QE++  G L    LK          
Sbjct: 182 QNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRKS 241

Query: 383 ---------KEKS----------------GTSAVLKESD---------------IYAAFR 402
                    K KS                GTS V++ S                 + +  
Sbjct: 242 KRLIVEEATKNKSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLMRIGAQEVRKFLSKT 301

Query: 403 ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
           ++ +  A+ + +  G V++   S L L Q  G  I AE +N  RY+SHFR+VHRGS F +
Sbjct: 302 SAYVGKAIQSMIKVGKVNS--QSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSSFAK 359

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQI 514
           MR++  R+L  ++WGF+CPVHTPDG PCGLLNH+T+ C+IS +  S        K+   +
Sbjct: 360 MRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMSL 419

Query: 515 PSVLVSLGMLPLTPVIQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIP 573
            + LV  GM  L P I+   P + L V +DG IVG     IA++ +          E IP
Sbjct: 420 IARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVG----SIASAKIE---------EVIP 466

Query: 574 KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL-----AAGNIEWIGTFEQVFMDI 628
           + LE+ Y+  P    G YPGLYLFT P R LRPV +L        NIE IG FEQ FM+I
Sbjct: 467 EDLEVGYV--PLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEI 524

Query: 629 -CIT-----MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
            C         + +P   TH E+  T  LS +ANL P  D NQSPRNMYQCQM KQTMG 
Sbjct: 525 RCPDGGDGGRNKLFPA--THEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGF 582

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
                +++   K + LQTP +P  R   Y    MD FP GTNAIVAV+SYTGYDMEDAMI
Sbjct: 583 CGQALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMI 642

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           LNKS+ +RG   G IF++  I+L +      TE               FF          
Sbjct: 643 LNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTE---------------FF---------- 677

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
                   K    RD    A+E     DGL  +G  +   +  YS            +  
Sbjct: 678 -------CKSNLSRD-TTAAIES----DGLPRIGENIFPNEQYYSVCNNLTGTVRPIKLK 725

Query: 863 GKEEMCVEVVRMS-SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
           G E   ++ V ++ + F +        A I  R  RNP +GDKF+SR GQKG+CS  WP 
Sbjct: 726 GSEPAAIDYVAVNGTNFKD----RLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPD 781

Query: 922 EDLPFT-DSGLVPDIVFNPHGFPSRMTIGFL 951
            D+PF+ ++G+ PD++ NPH FPSRMTI  L
Sbjct: 782 IDMPFSANTGMRPDLIINPHAFPSRMTIAML 812



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 5/56 (8%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
           G+NY+GTE +YSGV G+ M+ +IF G V+YQRLRHMVSDK+Q +     D   R P
Sbjct: 856 GFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQP 911


>gi|397574467|gb|EJK49226.1| hypothetical protein THAOC_31929 [Thalassiosira oceanica]
          Length = 878

 Score =  424 bits (1090), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 258/673 (38%), Positives = 371/673 (55%), Gaps = 84/673 (12%)

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KSGTSAVLKESDIYA 399
           M  KL+    G   +D+ DS+  QEI+  G L    +K++     +S    +L+E   ++
Sbjct: 1   MLRKLYSFAAGDCGVDNADSLQNQEILLPGHLLCTFVKEKFDECLESMRKGLLREMRNHS 60

Query: 400 AF-------------------RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
            F                    +  I + +++FL+TGN+ +  ++ L LMQ SG+ I+AE
Sbjct: 61  QFLNNVGQAKWWSKIVDRYGISSGGIGAKVSHFLSTGNIIS--STGLDLMQVSGYTIVAE 118

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
            +N +R+ +HFR+VHRG +F EM+++  R+L  D WGF+CPVHTPDG PCGLL+H+   C
Sbjct: 119 KLNFLRFCAHFRSVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKC 178

Query: 501 QISEYIPSKV---LAQIPSVLVSLGMLPLTPVIQS------IPEQALMVMLDGRIVGYIL 551
           Q   +   K    L  +  +LV  G+ P     +S           L V++DGR+VG   
Sbjct: 179 QCMAFPAQKEGGDLEDLSELLVGWGVRPTGTGGESGDGSGTSSHTDLPVLVDGRVVGGAS 238

Query: 552 DQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
            ++  S+  +LR LK V EK  +P++LE+ ++    KG G YPGL+LFT   R++RPV+ 
Sbjct: 239 VKLCKSIAFQLRELK-VAEKPTVPQTLEVAFIPPGMKG-GPYPGLFLFTVAARVVRPVLQ 296

Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
            A G  E+IG  EQ FMDI    ++   GITTH+EL   + LS +A+L P  D NQSPRN
Sbjct: 297 RATGRTEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRN 356

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
           MYQCQMGKQTMGTP  +  Y+   KLY++QTP +P  +   +    MD +P GTNA+VAV
Sbjct: 357 MYQCQMGKQTMGTPGHSLPYRSDNKLYKIQTPQAPLVQTAVHGEYKMDEYPNGTNAVVAV 416

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
           +SYTG+DMEDAMILNKSSYERGF H  ++K++ +++         E M   V+    + +
Sbjct: 417 LSYTGFDMEDAMILNKSSYERGFGHASVYKTVKVDI--------AEEMSMAVNKGADKDK 468

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW 849
           I  G    +R+R +  +    K     +     LED    DGL  VGA + E  P+Y   
Sbjct: 469 IKLG-NKTKRVR-VPPENEGDKPTVKYEKMYPNLED----DGLPPVGAWVKEGHPLYCLA 522

Query: 850 KESENRYVTCRYSGKEEMCVEVVR---MSSGFTEG-GSVTPNCA--YIGYRIQRNPTVGD 903
            +  N     ++  KE+ CV+ +R   MS G   G GS   N     +  R  RNP +GD
Sbjct: 523 DDGPNSGHVGKHKEKEKACVQNIRRLNMSGGQAGGRGSKDANKEGLSVTLRFPRNPVIGD 582

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV-------------------------FN 938
           KF+SR GQKG+ S+ WP  D+PF++SG+ PD++                          +
Sbjct: 583 KFSSRHGQKGVLSILWPQTDMPFSESGISPDVIISKLSLVALASLSKRSMSHFSRLFELD 642

Query: 939 PHGFPSRMTIGFL 951
           PH FPSRMTIG L
Sbjct: 643 PHAFPSRMTIGML 655



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
           +GYNYYG+E +YSGV G +MQA ++ GVV+YQRLRHMVSDK+Q +     +P  +     
Sbjct: 697 AGYNYYGSEPLYSGVSGCLMQADLYIGVVYYQRLRHMVSDKYQVRATGTVNPLTRQPIKG 756

Query: 827 LGPDGLVYVGAKLNERDPMYSY 848
               G + +G    ERD + S+
Sbjct: 757 RKKGGGIRLGEM--ERDSLLSH 776


>gi|300708202|ref|XP_002996285.1| hypothetical protein NCER_100631 [Nosema ceranae BRL01]
 gi|239605574|gb|EEQ82614.1| hypothetical protein NCER_100631 [Nosema ceranae BRL01]
          Length = 1054

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 295/949 (31%), Positives = 458/949 (48%), Gaps = 165/949 (17%)

Query: 68  LGAPHIASFDFML-DEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHF 126
           +  PHI S++ +  ++     ++ + P+       + ++ I    + +P +         
Sbjct: 6   IAKPHIESYNALFYNKVFKNIIKKVKPLTI----GSFRMEIADFTVHQPFITERNNISLD 61

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
            +  P EAR T + Y G   +  +  +D K   +  +  G  PIM+KS  CHL +     
Sbjct: 62  RRLLPREARLTNTTYKGKIFIKFSLFYDDKLISSEFRPCGGFPIMVKSGYCHLLDEPNPN 121

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
            I+  E  ++ GGYFI+ G +KL+R  I  +RN+P A+ R   KN+   ++D  +YIRSV
Sbjct: 122 SIDEDE--NDIGGYFIINGIDKLIRFHIMQKRNYPFALCR-PQKNKN--YTDNYIYIRSV 176

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKS------MCLLGMMQSLHEEGIHTQHDSKVFFG 300
             DE      LH+  +G   + F  R++      + +L  + +  ++ I+   ++ ++  
Sbjct: 177 GDDELGHVGYLHYSIDGDVFYRFFRRRNEFHIPIIIILKALVNTTDQEIYKMLNNDIYIT 236

Query: 301 QIFKEKLQYDLRHLNEV------------------EICDYMLTNCILPHLDDYWDKFLCL 342
              K+  + ++    E                   E C  +L   + PHL    DKF  L
Sbjct: 237 VALKKATKEEVFSRAECIEYIGARFKQSMNASTNEEACIEILDTYVCPHLTKNQDKFNFL 296

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------------- 383
            +   KLF +V+G +  +  DS    E++T   L+  + K                    
Sbjct: 297 IYSIKKLFSLVKGEIIPEDSDSPASHEMLTETQLFANIFKDKLEDLKRSFKAQIMRTFLR 356

Query: 384 --------EKSGTSAVLKESDIYAAFR---ASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
                   EK+    +    +   AF+    +S+  A  +FL+TGN++   +S   ++Q+
Sbjct: 357 KNGKRKDYEKNKEPILPSLENCMHAFKYLDCASVGRAFESFLSTGNINIQNSS--DILQS 414

Query: 433 SGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGL 492
           +GF IMAE IN  RY+SHFR+++RGS+FQE+R++  R+LR+++WGF CPVHTPDGTPCGL
Sbjct: 415 AGFSIMAERINFYRYISHFRSLNRGSFFQEVRTTGVRKLRSESWGFFCPVHTPDGTPCGL 474

Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD 552
           L HLT+   +  +  +       ++L S G++P     Q I    + V  +G ++GY  +
Sbjct: 475 LTHLTSAASLVNFTNNFDY----NLLYSFGIIPSHR--QFI--NGISVFYNGLLIGYTFN 526

Query: 553 QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
                L  KLR  +        SLEI++      G+ LY  + ++    R++RPV++  +
Sbjct: 527 --PCDLTNKLRKYR---RDNNLSLEIIHYS----GLKLYETVLIYNTVSRLIRPVLHKES 577

Query: 613 GNIEWIGTFEQVFMDICITMKEAY---PGITT---HRELSKTDFLSNLANLIPMPDCNQS 666
           G IE +G  EQVF+DI +     Y   P I+    ++E+   +  S +A+L P  + NQS
Sbjct: 578 GKIEMVGIMEQVFLDINLNDMTVYKDSPNISKCFEYQEVDNQNIFSIVASLTPFSEYNQS 637

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRNMYQCQM KQ+MG P  N + +   K+Y L     P  +   Y  +   ++P+G N I
Sbjct: 638 PRNMYQCQMAKQSMGHPAHNIKTRNDSKIYMLNYTQHPIVQNKKYSLVQ--DYPLGLNCI 695

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAV+SYT YDMEDAM++NK S ERG             L +GY Y         VD   +
Sbjct: 696 VAVLSYTAYDMEDAMVINKGSMERG-------------LFTGYVY--------KVDKIEL 734

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY 846
                F  +                                 PD    VG K+N  D +Y
Sbjct: 735 PKDCCFSYL---------------------------------PD----VGCKINTGDILY 757

Query: 847 SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT-EGGSVTPN---CAYIGYRIQRNPTVG 902
            Y            + GKE   +   + S G+  E   +  N   CA I +RI RNP +G
Sbjct: 758 KYTD----------FGGKETSVL--CKSSDGYIIESVDIFENENLCANIKFRIIRNPNIG 805

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           DKF SR GQKG+CS+ WP+ D+PFT+SG+VPDI+ NPH FPSRMTIG L
Sbjct: 806 DKFCSRHGQKGVCSMHWPSIDMPFTESGIVPDIIINPHAFPSRMTIGML 854



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           ++ G+NYYG E MYSG+ G+  +  IF GVV YQRLRHMV+DK+Q +
Sbjct: 898 IQHGFNYYGNEPMYSGITGTEFKTDIFIGVVFYQRLRHMVNDKYQVR 944


>gi|357479197|ref|XP_003609884.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355510939|gb|AES92081.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1341

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 296/840 (35%), Positives = 420/840 (50%), Gaps = 132/840 (15%)

Query: 36  LNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIE 95
           +N  T  + SL NL   NF        + L  L  PHI SFD +++ G++   + I  + 
Sbjct: 10  INNLTKQSNSLDNL---NF--------DALKVLFKPHIESFDHLIEAGMETIFKSIKLVV 58

Query: 96  FEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEA---------RQTRSVYSGPFN 146
                    +NI+       K   G         YP EA         RQ +  YSG F 
Sbjct: 59  VHPTTFQKLINILFFFFLFSK--DGIAKTTRKTLYPFEASFNFLSFICRQAKLTYSGRFT 116

Query: 147 VTVAWSWD-GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGG 205
             V + +D  +A        G+ PIML+SKRC+LR+  P +L+   E   E GGYFIV G
Sbjct: 117 ADVCFKYDDSEAILRENFNFGQFPIMLQSKRCNLRDFPPRKLVSYKEEASEMGGYFIVNG 176

Query: 206 HEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSA 265
            E+ +R +I  +RN+P++  R+++  R   ++D  V IR V+ D+++    L+ + NGSA
Sbjct: 177 LERCIRPIILPKRNYPMSTVRSSFSERREGYTDKAVVIRCVRADQTSLTVKLYHLRNGSA 236

Query: 266 R--FMFSHRKSMCLLGMM--------------------QSLHEEG---IHTQ---HDSKV 297
           R  F    R+ M  +G++                       +E+G   + TQ     +K+
Sbjct: 237 RLGFWIHGREYMLPVGILLKALIDTTDREIYANLTSCYSEKYEKGKGVVGTQLVGERAKI 296

Query: 298 FFGQIFK--------EKLQY----------DLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
              ++ +        E L+Y          +LR+ +   + D +L N I  HL++ +DKF
Sbjct: 297 ILDEVCEVSKKFTRLECLEYIGEHFQPIMHELRNESHYTVADDVLKNYIFVHLENNFDKF 356

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYA 399
             L  M  KLF +V      D+ DS+  QE++  G L    LK  +   + + K  +  A
Sbjct: 357 NLLIFMLQKLFSLVDQTSVPDNPDSLQNQEVLLPGHLITIYLKAGRHMLTGLAKLEEWLA 416

Query: 400 A-----------------------FR-------------ASSIESAMTNFLATGNVSAGK 423
                                   FR             AS +  A+ + L TG ++   
Sbjct: 417 KGKTLLLDEIKRGGKIGKIGEKFDFRKFHHVKKVLEKNHASGVGKAIESMLTTGRLAT-- 474

Query: 424 NSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
           +  L L Q SG  + AE +N +R++SHFR VHRG+ F  +R++  R+L  ++WGF+CPVH
Sbjct: 475 SIPLDLPQTSGLTLQAERLNFLRFLSHFRHVHRGALFAGLRTTTVRKLLPESWGFLCPVH 534

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPSVLVSLGMLPLTP-VIQSIP 534
           TPDG PCGLLNH+T  C+I+ +  S        K+   I ++L+ +GM    P +    P
Sbjct: 535 TPDGGPCGLLNHMTHTCRITSFYDSQGKVKNYYKIKLSILNILIEIGMTQSLPKIFLPGP 594

Query: 535 EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPG 593
            + L V+LDG IVGYI       +V  +R LK+     IP  LE+ Y+  P    G YPG
Sbjct: 595 PEVLTVLLDGCIVGYIPSTEVEKVVAHIRELKVSSAAVIPDDLEVGYV--PLSMGGAYPG 652

Query: 594 LYLFTGPGRMLRPVMNLAA-----GNIEWIGTFEQVFMDI-CIT-----MKEAYPGITTH 642
           LYLFT P R +RPV NL+       NIE IG FEQVFM+I C        K ++P   TH
Sbjct: 653 LYLFTSPSRFIRPVRNLSIPSNGNENIELIGPFEQVFMEIRCPDGGDGGRKSSFPA--TH 710

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+  T  LS +ANL P  D NQSPRNMYQCQM KQTM       +++   KLY LQTP 
Sbjct: 711 EEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLYHLQTPQ 770

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
           +P  R   Y   ++D FP GTNAIVAV++YTGYDMEDAMILNKSS ERG  HG I++ + 
Sbjct: 771 TPIVRTSAYTEYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQCVI 830



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 7/123 (5%)

Query: 830  DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
            DGL +VG  +   +P  S + E  N+    R  G E   ++ V +              A
Sbjct: 996  DGLPHVGQMIGPDEPYCSIYNEVTNKTRLIRKKGTEPAYIDCVAVDLKKHR------RKA 1049

Query: 890  YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT-DSGLVPDIVFNPHGFPSRMTI 948
             I +R  RNP +GDKF+SR GQKG+CS  WP  D+PF+ ++G+ PD++ NPH FPSRMTI
Sbjct: 1050 NIRFRHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGNTGMRPDLIINPHAFPSRMTI 1109

Query: 949  GFL 951
              L
Sbjct: 1110 AML 1112



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 5/58 (8%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ-----TKDYFGRDP 818
            E G+NY+G E +YSGV G+ +  +IF G V+YQRLRHMVSDK+Q     T D   R P
Sbjct: 1156 EKGFNYHGCEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQITRQP 1213


>gi|156084478|ref|XP_001609722.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
 gi|154796974|gb|EDO06154.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
          Length = 1283

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 322/1014 (31%), Positives = 481/1014 (47%), Gaps = 210/1014 (20%)

Query: 103  LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
            ++++++   I  P  P        N+ +P  A+   + Y     V       G +    T
Sbjct: 71   VQVSVLSLRIGNPTRPGSECLGSDNRMFPRHAKIAHTTYESSLIVKFGLKIPGTSK-VLT 129

Query: 163  KE--VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
            KE  VG +PIM+KSKRC+L  ++P +++E+GE  DE GGYF+V G+E++VR LI  R N+
Sbjct: 130  KELTVGYIPIMVKSKRCNLDGISPEEMVEQGEDIDEPGGYFVVRGNERIVRQLIVLRSNY 189

Query: 221  PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESAT-NNVLHFVTNGSARFMFSH-------- 271
            P+AIK    + + +LF+D  + +RS   D+  + NNVL+   N   R MF          
Sbjct: 190  PLAIKSGNNRTKHVLFTDYSIMMRSQCHDDGCSVNNVLYLTVN--KRCMFRTIVKGSVQL 247

Query: 272  -------RKSMCLLG--------MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL----- 311
                   R +M L+         +  +L +E + T +  + F   + +E    D+     
Sbjct: 248  IPFGVLLRATMPLMSDEELKQKLLQDTLGDEAL-TVYYQRFFLDLVEREPDICDIDLKEN 306

Query: 312  RHLNEV-------------------EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHV 352
            RHL  +                   E   Y L + +L       +KF  L +M  KL  V
Sbjct: 307  RHLYRLGSACWSQVNQYLHPGATYEECGAYFLRHYVLLQAKTNAEKFETLLYMFKKLIKV 366

Query: 353  VQGMVQLDSEDSIMLQEIMTGG---------SLYLQLLK-------------KEKSGTSA 390
             +G +Q ++ DS   QE++  G         SLY+ LLK             K  SG + 
Sbjct: 367  SRGEIQTENYDSFAFQELLLPGQIYSCILKESLYVALLKIRSIYHAELLELCKNISGDAT 426

Query: 391  V-----LKESDI--------------------YAAFR-ASSIESAMTNFLATGNVSAGKN 424
                  L + D+                    YA  + AS I   + +FLATGN +   N
Sbjct: 427  RHSKRRLIDVDLQSHEQKELLEKLLEKPELFSYAVEKVASDIPKKLHSFLATGNAT---N 483

Query: 425  STLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
               +L Q+SG  ++AE IN  R+MSHFR++HRGS F +MRS+E R+L  + WGFICPVHT
Sbjct: 484  MHFELTQSSGLTVVAERINYHRFMSHFRSLHRGSLFAKMRSTEVRKLLGETWGFICPVHT 543

Query: 485  PDGTPCGLLNHL--------TTNCQ-ISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE 535
            PDG PCGLL HL         T+C+  +E + S +     SV  + G   +T  +    +
Sbjct: 544  PDGAPCGLLLHLAQYAVPVTATDCEGAAEAVKSLLRTHGYSVDFT-GHETVTDFVTHDAQ 602

Query: 536  --QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYP 592
              + + V++DG  +  +    A  L  ++++ K  G+  + +  EIV    P+   G Y 
Sbjct: 603  HIKRIHVIVDGVPMCTLPINEAPKLYDEIKLAKRYGKFGLKEHYEIV--ASPDV-KGEYT 659

Query: 593  GLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEA----------------- 635
             + + T PGR++RPV+ L +G IEWIG   Q++  I ++ +EA                 
Sbjct: 660  SIMILTYPGRVIRPVICLTSGEIEWIGPITQLWSTIAVSEEEARISHQMVASNAEGKCKT 719

Query: 636  --------------------------YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
                                       P    + E+S +  LS  A L P  + NQSPRN
Sbjct: 720  LSIDEALMHDNSSDHAVSPVKKVIDNVPVKYDYMEVSPSAILSVTAALTPFSNHNQSPRN 779

Query: 670  MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
            MYQCQM KQ+MG P    +++   K YRL  P  P      +  ++ +++P G NA+VAV
Sbjct: 780  MYQCQMLKQSMGVPYHCEQFRSDVKAYRLLFPQKPLVTTTEFRQMNYEDYPTGMNAVVAV 839

Query: 730  ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
            I++TG+DMEDAMI+NKSS +RG  HGCI+KS  I+                 +G     Q
Sbjct: 840  IAHTGFDMEDAMIINKSSLDRGAFHGCIYKSKVIDAMPA-------------NGRSRGNQ 886

Query: 790  IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP---MY 846
             +F   ++   + + S                     L  DGL  VGA++ +  P   + 
Sbjct: 887  HYFANTNHLGSKIIAS---------------------LDKDGLPNVGARVKKGTPICRIE 925

Query: 847  SYWKESENRYVTCRYSG--KEEMCVEVVRMSSGFTEGGSVTPNC-------AYIGYRIQR 897
            S+ K   ++ ++ R      E+  V+ V +        +  PN        A I +RI R
Sbjct: 926  SHEKVGGSKQISDRVEKYHDEDAIVDQVTIIGCNDASVAEMPNASNIKGTRATIKFRIVR 985

Query: 898  NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            NP VGDKFASR GQKGI S+ WPAE++PF +SG++PDI+FNPHG PSRMTIG L
Sbjct: 986  NPIVGDKFASRHGQKGILSMAWPAENMPFLESGIIPDIIFNPHGLPSRMTIGKL 1039



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L++GY+YYGTE+MY G  G+ ++  IF G + YQRLRHMVSDK Q +     D   K   
Sbjct: 1112 LQAGYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKAQVRATGPVDAITKQPV 1171

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMC 868
                  G +  G    ERD + ++   +  ++R + C  +    +C
Sbjct: 1172 KGRKNRGGIRFGEM--ERDSLIAHGASALLQDRLIHCSDAHTAYVC 1215


>gi|299115649|emb|CBN75850.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
          Length = 1050

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 258/708 (36%), Positives = 370/708 (52%), Gaps = 96/708 (13%)

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWS-WDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           K  P E R+    Y G   V + +   DG    T  K  G  P+M+ S+RCHLR   PA+
Sbjct: 80  KLTPRECRERGLTYHGALLVDLCYQVGDGDVVRT-QKRAGDCPVMVGSRRCHLRGHGPAR 138

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           L    E   E GGYFIV G E+++RLL   +RN+  AI R  +K+RG  +S+ GV +R  
Sbjct: 139 LTRGREEAGEMGGYFIVRGIERVIRLLQVPKRNYAHAISRGTFKDRGQGYSEKGVMMRCA 198

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMM-----------QSLHEE-------- 287
           ++D+S     LH+++ G A   FS RK   L+ ++           + +HE         
Sbjct: 199 RKDQSTLTVTLHYISTGGATLRFSVRKQEFLVPVVIILKALRDTSDREIHERVLQGQKDN 258

Query: 288 -----------------GIHTQHDSKVFFGQIFKEKLQYDLRHLN---EVEICDYMLTNC 327
                            G+H++ +S  F G  F+  LQ      +     ++ D + T  
Sbjct: 259 TFLAAHVEVLLRDGKRWGLHSRMESLAFLGSTFRTVLQAPATATDIELGKKVIDRVETGW 318

Query: 328 ILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG 387
             P    +     CL      LF  +  + QL   D+ M Q                   
Sbjct: 319 CWPWRCRWNWPRCCLR----ALFVSLPAVRQLIGRDARMDQ------------------- 355

Query: 388 TSAVLKESDI-----YAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
             AV++  D      Y     S++   M+ FL+TGNV +   S L LMQ SGF I+AE I
Sbjct: 356 AKAVMQVRDAKHMAKYLDRFGSAVGQGMSTFLSTGNVIS--TSGLDLMQVSGFTIVAERI 413

Query: 443 NRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           N +RY++HFR+VHRG +F  M+++  R+L  ++WGF+CPVHTPDG+PCGLLNHL T C++
Sbjct: 414 NFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATACKV 473

Query: 503 -----SEYIPSKVLAQIPSVLVSLGMLPLTPVIQ----SIPEQALMVMLDGRIVGYILDQ 553
                    P++    + S+LV LG+ P          S+P   L V++DGR+VG   + 
Sbjct: 474 VCGGGKAPPPAESPLSLESLLVRLGVAPAGTGAGDGALSLPSSFLPVLVDGRVVGGGSEA 533

Query: 554 IATSLVPKLRMLKIVGEK-------------IPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
                  +LR LK+V                +  +LE+ ++   + G G YPGL+L +  
Sbjct: 534 TLKRAAAELRRLKVVAAAGGGAAGKGGGGGGVDPTLEVGWVPPMKGGAGPYPGLFLNSEG 593

Query: 601 GRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPM 660
            RM RPV++L +G +EWIG   Q FM+I     +  PG+TTHREL  T+ LS +A+L P 
Sbjct: 594 ARMCRPVLHLQSGRMEWIGPMAQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPF 653

Query: 661 PDCNQSPRNMYQCQMGKQTMGTP--CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
            D NQSPRNMYQCQMGKQTMGTP  CL   ++   K+Y++  P +   +   +    +D+
Sbjct: 654 SDYNQSPRNMYQCQMGKQTMGTPAHCLT-PHRTDNKMYKVLFPQAAIVQTRRHGEYQLDD 712

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +P GTNA+VAVISYTG+DMEDAMILNKSS+ERGF H  + K+  ++L 
Sbjct: 713 YPQGTNAVVAVISYTGFDMEDAMILNKSSFERGFGHASVLKTFAVDLR 760



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GY Y+G+E +YSGV G++M A IF G+V+YQRLRHMVSDK Q +
Sbjct: 877 SAGYAYHGSEPLYSGVTGTVMHADIFIGLVYYQRLRHMVSDKSQVR 922


>gi|302847118|ref|XP_002955094.1| hypothetical protein VOLCADRAFT_95925 [Volvox carteri f.
           nagariensis]
 gi|300259622|gb|EFJ43848.1| hypothetical protein VOLCADRAFT_95925 [Volvox carteri f.
           nagariensis]
          Length = 1095

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 302/917 (32%), Positives = 444/917 (48%), Gaps = 138/917 (15%)

Query: 71  PHIASFDFMLDEGLDLAVEDIAPIEFEI--YGKTLKLNIVKAAISEPKVPAGPVGIHFNK 128
           PH+ S+++ + EG+D  +E++   E      G+T+++      +  P    G       +
Sbjct: 50  PHVESYNYFISEGIDHVMENLKSYEVTHPGTGRTMRMWWTDVRVERPVREEGLK--RSRR 107

Query: 129 YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT--KEVGRVPIMLKSKRCHLRNLTPAQ 186
             P + R+  + Y G  N+   ++W    G  +T  +++G +PIM++S+ C L  LT  +
Sbjct: 108 LLPRDCREGGTTYKG--NLVATFNWQSGDGMEYTVERKLGGMPIMVRSRACWLNGLTRGE 165

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           L+   E  +E GGYFI  G E+++R LI  RR++ + ++R A+  R      + +++  V
Sbjct: 166 LVACREEANEMGGYFICNGLERIIRCLILQRRHYIMGLRRAAYHKRDYKMMTMPMWVMVV 225

Query: 247 K---RDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
           +    D      ++     GS    F   ++  LL   +      + T+     + G+ F
Sbjct: 226 RGQVSDRELYVKLVAGAAPGSGAAAFLAERAELLL---RQADRPELRTKTQCIEYLGRHF 282

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHLDDY--WDKFLCLSHMTCKLFHVVQGMVQLDS 361
           +  L+       + E+   +L   +  HLD     DK   L  M  KL+ +V G    D+
Sbjct: 283 RVVLEQP-PSATDFEVGQVLLREYVFIHLDPERPADKLALLLAMLHKLYALVSGAAVEDN 341

Query: 362 EDSIMLQEIMTGGSLYLQLLKK---EKSGTSAVLKESDIYAAFRASSI----ESAMTN-- 412
            D++   EI+  G L L+ LK+   +  GT+  L   D+  A +  S+    ES M N  
Sbjct: 342 PDALTHHEILLPGHLLLKFLKERLEDALGTARGLILRDL--ASKPESVDFTSESYMHNVI 399

Query: 413 ------------FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYF 460
                        + TGN+ +     L L Q++GF ++AE +N  RY+SHFR+VHRG+YF
Sbjct: 400 KKLPDIGQKFEYLINTGNLMS--KDGLDLSQSTGFTVVAEKLNFFRYLSHFRSVHRGAYF 457

Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVS 520
            EMR++  R+L  ++WGF+CPVHTPDG PCGLLNH T  C+I                V+
Sbjct: 458 AEMRTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFTALCRI----------------VT 501

Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVY 580
            G           PE         R+   IL  + T   P+   L    + +P  +E+V+
Sbjct: 502 QG--------SDQPE---------RMEISILQALETDTPPERLGLSPAEQDVPYHMEVVH 544

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI-CITMKE-AYPG 638
           +  P    G YPG++LFT   RM+RPV+ L +G  E +G+ EQ FM I C        PG
Sbjct: 545 I--PPLVGGPYPGIFLFTQTARMIRPVVQLGSGRREMLGSLEQCFMSIQCPDGGHGGSPG 602

Query: 639 IT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
           +  THREL+ +  LS +A+L P  D NQSPRNMYQCQM KQTMGTP     ++   K+YR
Sbjct: 603 LAYTHRELNASAMLSVVASLTPYSDFNQSPRNMYQCQMAKQTMGTPAQALAHRTDTKMYR 662

Query: 698 LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
           LQTP +P  R + Y    MD FP GTNAIVAV++YTGYDMEDAMILNKS+ ERG AH  +
Sbjct: 663 LQTPQAPICRTIRYAEYKMDEFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHASL 722

Query: 758 FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG-R 816
           +K   I L     + G                +F    H +R R  ++ + +    FG R
Sbjct: 723 YKVETINLREERGFKG----------------MFAAEPHDRRSRDALAHRTRPVGAFGQR 766

Query: 817 DPAN-KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
            P N  A  D   P  L   G    +  P+     E  NR                    
Sbjct: 767 FPQNIPAAADS--PAVLRKRGEAGGDNGPVLV--PEPNNR-------------------- 802

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS-GLVPD 934
               +G  + P+           P VG       GQKG+ S+ WP  D+PF  S G+ PD
Sbjct: 803 ----DGDRIEPDGL---------PAVGSIIWP--GQKGVLSILWPDVDMPFCASTGIRPD 847

Query: 935 IVFNPHGFPSRMTIGFL 951
           ++ NPH FPSRMTIG L
Sbjct: 848 LIINPHAFPSRMTIGML 864



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 32/47 (68%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF 814
           G++ YG ETM SGV G  M   IF G V+YQRLRHMVSDK+Q    F
Sbjct: 908 GFSRYGQETMISGVTGQEMPCDIFIGPVYYQRLRHMVSDKFQCPGGF 954


>gi|290976959|ref|XP_002671206.1| predicted protein [Naegleria gruberi]
 gi|284084773|gb|EFC38462.1| predicted protein [Naegleria gruberi]
          Length = 1069

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 290/896 (32%), Positives = 424/896 (47%), Gaps = 123/896 (13%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRV---PIMLKSKRCHLRNLTPAQ 186
           YP +AR     Y G    T+    +         ++  +   P+M+ S  C+L  L+P Q
Sbjct: 2   YPKDARIAGVNYGGSLKATILLKNEETGAIERIPDIQLMEDFPVMINSSFCNLPKLSPKQ 61

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS- 245
            + +GE   E GGYF+V G E + RLL   R N P AI R +W      F+D G+ +R  
Sbjct: 62  KMLQGEEEHESGGYFVVRGSEVVYRLLTQQRANFPFAITRPSWMGYKEDFTDKGILVRCR 121

Query: 246 -------------VKRD-------------------------ESATNNVLHFVTNGSARF 267
                         +RD                         E +  ++   +T G+   
Sbjct: 122 HPKTLITRLVNIHYRRDGVVFMRAGNPVPFYINIVLALKALRECSDRDLFLLLTAGTKNK 181

Query: 268 MFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNC 327
           +   R  + LLG  +      + T+ D+ +  G I+     + LR L E    + ++ + 
Sbjct: 182 VTLDR-VVELLGDFRKTFPT-VQTREDAIIALGTIYDP---HGLRRLEEPVDKNKLIKSG 236

Query: 328 ILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY---------- 377
                   ++KF  L +   KL+  V G +  ++ D     E++T G +           
Sbjct: 237 --------YEKFDFLVYCVQKLYKFVDGEIAEENLDDFDNHELLTVGEVLSNVIPLIIYN 288

Query: 378 ---------LQLLKKEKSGTSAVLKESDIYAAFR-------ASSIESAMTNFLATGNVSA 421
                     +LL K  +     + E    A FR       + +  + +    + G+VS 
Sbjct: 289 KIQLAHGTCAKLLMKSATTMQPDMLEQKYLALFRDKCKSILSKACPNDINRLFSVGDVSV 348

Query: 422 GKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
                 +L Q        E IN +R +SHFRA HRG  F +  S+  R+L    WGFICP
Sbjct: 349 SAPFRPELSQTRALFTKLERINFLRVISHFRATHRGIAFLDSNSTRMRRLTPSFWGFICP 408

Query: 482 VHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGMLPLTP---VIQSIPEQA 537
           VH+PDG  CGL+NHL+   +I +     K L  +  + + LGMLP +    +  SI ++A
Sbjct: 409 VHSPDGHLCGLVNHLSQTTEIVTHQAKPKELRSVVEMCLKLGMLPSSTEKCISVSIEDEA 468

Query: 538 LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYL-KRPEKGMGLYPGLY 595
             VMLDG I+G +      +L  +LR  K+ G+  +PK +EI    K     +   P L 
Sbjct: 469 -PVMLDGAIIGKVSHDKLQNLADQLRYCKVSGKYGLPKFMEIACQPKYSAMDIPYLPQLN 527

Query: 596 LFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLA 655
           +FT   R +RPV  L  G  EWIG+ EQVFM+I +T+++  P  TTH E+  T+F+S L 
Sbjct: 528 IFTDIARAVRPVRYLPTGQDEWIGSAEQVFMNIAVTVEDIKPN-TTHMEIDPTNFMSFLG 586

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
           NL P  + NQSPR +YQCQM KQ+M     +  ++   KL+ ++ P  P  R  H   L 
Sbjct: 587 NLTPFCNFNQSPRCIYQCQMAKQSMAAVFHSVDHRVDTKLFDMKLPQKPLTRTKHQTDLP 646

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
            D F  G NA+VAVISYTGYDMEDAMI+NK+SYERG  HG +FK+  I+L  G  +    
Sbjct: 647 FDEFNNGCNAVVAVISYTGYDMEDAMIMNKTSYERGMMHGTVFKTEDIDLTEGTAF---- 702

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYV 835
                                   L + V DK +       D   K  ED L  DGL  V
Sbjct: 703 ------------------------LTNRVFDKTE----MDSDYQAKEFED-LDYDGLPEV 733

Query: 836 GAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRI 895
           G  L+E     +Y+   + +++  ++   +   V  V++ +          + A I +R+
Sbjct: 734 GLPLDEGSIFANYYDPEKQKFMPMKWKDVDSATVHSVKVIATDPSDYKKVKH-ASITFRL 792

Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            RNP +GDKF+SR GQKG+ S+ WP ED+PFTD G+VPDIV NPH FPSRMTIG L
Sbjct: 793 NRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTDGGIVPDIVINPHAFPSRMTIGML 848



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 11/105 (10%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----------DYF 814
           ++GYNY+G E MYSG  G+ ++A I+ GVV+YQRLRHMVSDK+Q +              
Sbjct: 887 KAGYNYHGNEVMYSGALGTTLKADIYMGVVYYQRLRHMVSDKYQCRVGGPTNAITHQPVK 946

Query: 815 GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
           GR  A      ++  D LV  GA    +D  +     S     TC
Sbjct: 947 GRKKAGGVRMGEMERDALVAYGAAAVVKDRFFDCTDSSTAIVCTC 991


>gi|429329474|gb|AFZ81233.1| DNA-directed RNA polymerase subunit beta, putative [Babesia equi]
          Length = 1270

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 316/1059 (29%), Positives = 482/1059 (45%), Gaps = 215/1059 (20%)

Query: 66   LTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTL-------------KLNIVKAAI 112
            +++   H+ SF+  +D      V+ I P+      + L             K+ ++   I
Sbjct: 9    MSISHSHVDSFNAFIDHYSVNMVKRIPPVYISCDNEYLSRFLNPNEKPYYVKITVLSLKI 68

Query: 113  SEPKVPAGP-VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE--VGRVP 169
              P  P    +GI     YP  A+ + + Y  P  VT    +        TKE  VG +P
Sbjct: 69   GYPTRPGSECIGIK-QHMYPRHAKTSHTTYEAPLVVTFGIKF-SDTESIVTKELIVGHIP 126

Query: 170  IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAW 229
            +M+KSKRC+L  LTP +++++GE  DE GGYFI+ G EK++R +I  R N+PIAIK    
Sbjct: 127  VMVKSKRCNLSGLTPEEMVQQGEDIDEPGGYFIIRGVEKIIRQVIITRSNYPIAIKSENN 186

Query: 230  KNRGLLFSDLGVYIRSVKRDESA-TNNVLHFVTNGSARFMFSHRKSMCLLGMM------- 281
              R +LF+D  + +R    D+     NVL+   N    F    + S+ L+ +        
Sbjct: 187  SLRNVLFTDYSIVMRCQSHDDGCYVTNVLYLTINKRCMFRVLIKNSVVLIPLTLLLRALV 246

Query: 282  ---------QSLHEEGIHTQHDSKVFFGQIFKEKLQYD-------------LRHLNEV-- 317
                     Q L +  I  + +   ++ Q F + ++ D             L  L +V  
Sbjct: 247  PYMSDDELKQKLLQNTIGDE-EMTTYYHQFFLDMIRCDPILSDIDFTENRYLYRLGKVCW 305

Query: 318  --------------EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
                          E   Y L   ++ H     +KF  L  M  KL  + +G +Q +S D
Sbjct: 306  SRINQYLHPGATFEECAVYFLKYFVIIHAHTNVEKFETLLFMFNKLIKLSRGEIQSESYD 365

Query: 364  SIMLQEIMTGGSLYLQLLKK---------------------------------------- 383
            S   QEI+  G  Y  +LK+                                        
Sbjct: 366  SFAFQEILLPGQTYSCILKESLYLALTRIKKIYSTEISYFGRYLQGDVSARSKRKFMDFG 425

Query: 384  EKSGTSAVLKE--SDI----YAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
            E   +S ++K+  S +    YA  + A  I   +  FL++GN     NS  +L Q++GFV
Sbjct: 426  ENQDSSTLIKQLLSSVALFNYATDKIAPLISKRLLYFLSSGN---ALNSHFELNQSAGFV 482

Query: 437  IMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            ++A+ IN  R+ SHFR++HRG+ F +MRS+E R+L  + WGFICPVHTPDG PCGLL H+
Sbjct: 483  VVADRINYHRFASHFRSIHRGNIFTKMRSTEVRRLLGETWGFICPVHTPDGAPCGLLLHI 542

Query: 497  TT--------NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM-VMLDGRIV 547
            +          C  S     + L  +   +   G   +T    S  E+  + +++DG  +
Sbjct: 543  SQYAVLVTDPKCDDSISRVKQCLKHLGYCVDLCGNTLITNYFTSKDEKHYIPILVDGIPI 602

Query: 548  GYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
              I    + ++  +LR  K+ G   + +  EI+ L   +     Y  + + T PGRM+RP
Sbjct: 603  CTIPSSDSMNVYNQLRQAKLNGNFGMKQHYEIIALPDSKT---TYSNISVMTYPGRMIRP 659

Query: 607  VMNLAAGNIEWIGTFEQVFMDICITMKE-----------------AYPGITT----HR-- 643
            V  +  GN+EWIG   Q++  I ++  E                   P I+     HR  
Sbjct: 660  VRCVKTGNVEWIGPITQLWSTIAVSEYELSLSHSILESENVNKPHIAPSISETLSLHRNK 719

Query: 644  --------------------ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
                                EL  +  LS +A L P  + NQSPRNMYQCQM KQ+MG P
Sbjct: 720  ECNTNVDKFLENAPVSYEFVELKPSGILSVIAALTPFSNHNQSPRNMYQCQMLKQSMGVP 779

Query: 684  CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
                 Y+   K YRL TP  P      Y  +  D++  G NAIVAVI+++G+DMEDAMIL
Sbjct: 780  YHCETYRSDNKSYRLITPQKPLVTTEEYRKMGYDDYSTGINAIVAVIAHSGFDMEDAMIL 839

Query: 744  NKSSYERGFAHGCIFKSMFIEL--ESGYNYYGTETMYSGVD--GSMMQAQIFFGVVHYQR 799
            NK+S +RG  HGCI+K+  I+    S  N       ++ ++  G+++             
Sbjct: 840  NKASLDRGAFHGCIYKTKIIDAMPPSAVNKDSHSYYFNNINDAGNLI------------- 886

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            ++H+  D        G     + ++      G+++   +  ER     +  E   +Y   
Sbjct: 887  IKHLDKD--------GLPSVGQKVK-----KGMIFCRVEARERQNGEIHITERLEKY--- 930

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTP-----NCAYIGYRIQ--RNPTVGDKFASRAGQK 912
                 EE  ++ V +  GF++  +         C  +  +++  RNP VGDKFASR GQK
Sbjct: 931  ---DDEEGVIDQVTL-VGFSDSSADKSSSSGIKCTRVVIKLRIVRNPVVGDKFASRHGQK 986

Query: 913  GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            GI S+ WP ED+PF +SG+VPDI+FNPHG PSRMT+G L
Sbjct: 987  GILSMTWPVEDMPFLESGIVPDIIFNPHGLPSRMTVGKL 1025



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 35/47 (74%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L +GY+YYGTE MY G  G+ +QA IF G + YQRLRHMV+DK Q +
Sbjct: 1098 LMAGYDYYGTEAMYCGTLGTEIQAHIFVGCIFYQRLRHMVADKAQVR 1144


>gi|399216343|emb|CCF73031.1| unnamed protein product [Babesia microti strain RI]
          Length = 1256

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 326/1076 (30%), Positives = 470/1076 (43%), Gaps = 249/1076 (23%)

Query: 65   LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
            L  + A HI SFD  LD      VE + P+ +        L+ + +  + P      + +
Sbjct: 15   LSDIAASHIGSFDAFLDTYSKRIVECLPPV-YVAPNYNQMLHELNSGTAAPDCKYSRIVL 73

Query: 125  HF--------------------NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE 164
             F                     + YP +AR + + YS P  VT A      +GG    +
Sbjct: 74   PFFIKDVRIGYPRRNDCTDDADERLYPLQARISHTTYSAPIYVTFAL--QSTSGGVECSQ 131

Query: 165  V-------GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            +       G++P+M+KSKRC+L  LT  +L+ RGE   E GGYFIV G+E+L+R +I++R
Sbjct: 132  IVHKELLAGQIPVMVKSKRCNLCGLTGDELVARGEDAQEPGGYFIVRGNERLIRHMISSR 191

Query: 218  RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS------------- 264
             N+PI +KR  ++ +    ++  + +RS +RD +   NVL +  +               
Sbjct: 192  SNYPIGVKRKQFRAKDAFNTEYAIIMRSQRRDGTVVGNVLCYTEDERCVLRVAINKVIKT 251

Query: 265  ---ARFMFSHRKSMCLLGMMQSLHEEGIH----TQHDSKVFFGQIFKEKLQYDL-----R 312
                  + + +  M    + + L E+ +H    T H   +F   IF E L  D+     R
Sbjct: 252  IPFGTLLKAAKPHMSTWDLKKRLLEDFLHNEEMTVHFYNIFQNMIFLEPLVADVDFVENR 311

Query: 313  HLNEV-------------------EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVV 353
            +L+++                   E   +++ N I    +   DKF CL HM  KL  + 
Sbjct: 312  YLHQLGKACWHRVHTFMRPGSSLAECGLFVMKNYICVQSESLDDKFECLLHMFKKLILLA 371

Query: 354  QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIY----AAFR------- 402
            +G +  D  DS+  QE+   G +Y  +LK+  S  SA+ K   +Y    A F+       
Sbjct: 372  RGYIIPDQIDSLAFQELTLPGQIYASVLKE--SLYSALTKLKSLYSIEVANFKKYLATVE 429

Query: 403  --------------------------ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
                                      A  + S +  FL+TGN+++   S  +  Q  G+ 
Sbjct: 430  GVDDMEKVMLEFCSNISLFNYLTEKVAPEVPSKVNYFLSTGNINS---SYFEFQQNLGWT 486

Query: 437  IMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            I+A+ +N  R+MSHFR+VHRG+ F +M S+  R+L  ++WGF+CPVHTPDGTPCGLL HL
Sbjct: 487  IIADRMNYFRFMSHFRSVHRGNAFTQMLSTSMRKLLGESWGFLCPVHTPDGTPCGLLTHL 546

Query: 497  TTNCQISEYIP-SKVLAQIPSVLVSLGMLPLTPVIQSIP----------EQALMVMLDGR 545
            + +       P S  +  +   L  LG     P+    P           + + V++DG 
Sbjct: 547  SKHAWPLTSAPDSGTMGAVRKFLKDLGY----PLDLRAPGGITLDYRYVHKPVPVVVDGI 602

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
             +  I    A  L+  L   K+ G K I K  EI +     KG   Y  +Y+ T PGRM+
Sbjct: 603  PIARIPSDDAPQLMDALISAKLEGIKGIRKDFEI-FSTCEAKGQMEY--IYVLTFPGRMV 659

Query: 605  RPVMNLAAGNIEWIGTFEQVFMDICITMKE------------------------------ 634
            R V NL    +E IG   Q +  I I   E                              
Sbjct: 660  RMVKNLKFDRVELIGPIAQQWSFIAINTAELDQHRARIKLEYNLSSNPQSNPQSNPPSNL 719

Query: 635  ---------AYPGITTHRELSKT----------------DFLSNLANLIPMPDCNQSPRN 669
                      YP   +++ + K                   LS  AN  P  D NQSPRN
Sbjct: 720  PSNLPSNLPPYPSFESYKRIDKLLENIPVHYTHIEIEPHGILSICANCTPFSDFNQSPRN 779

Query: 670  MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
            MYQCQM KQ+MG P  +   +  GKLY L TP SP      Y  L ++N+  G NA+VA+
Sbjct: 780  MYQCQMLKQSMGIPAHSQPLRSDGKLYNLITPQSPLVSTSDYRRLHLNNYATGANAVVAI 839

Query: 730  ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
            ++YTG+DMEDAM++NKSS ERGF    + ++  ++               G         
Sbjct: 840  MAYTGFDMEDAMVINKSSIERGFLRATLCRTKVLDAAP-----------PGCSAKEGHCY 888

Query: 790  IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW 849
            +F                        R P+N  L+     DGLV VG  +    P+    
Sbjct: 889  VF------------------------RGPSNGPLD----ADGLVRVGQLIANGSPLARIE 920

Query: 850  KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN------------CAYIGYRIQ- 896
                      R     E   E  R+SS       VTPN            C+    R+Q 
Sbjct: 921  YAGTGAGARPRVEMYREE--EPARVSSVTL----VTPNPSRIDKCVESAPCSRAIIRLQS 974

Query: 897  -RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             R P VGDKFASR GQKGI S+ W  ED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 975  VRVPDVGDKFASRHGQKGILSMTWRHEDMPFTESGIVPDILFNPHGFPSRMTIGML 1030



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
             +G+ YYGTE MYSG  G+ ++  IF G ++YQRLRHMV+DK Q +
Sbjct: 1070 RAGFRYYGTEDMYSGATGTTIKTSIFTGCIYYQRLRHMVADKAQVR 1115


>gi|71028652|ref|XP_763969.1| DNA-directed RNA polymerase subunit beta [Theileria parva strain
            Muguga]
 gi|68350923|gb|EAN31686.1| DNA-directed RNA polymerase, beta subunit, putative [Theileria parva]
          Length = 1235

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 310/1055 (29%), Positives = 473/1055 (44%), Gaps = 210/1055 (19%)

Query: 62   NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLK-------------LNIV 108
            N+  LT+   H+ SF+  +D      V +I P+       +LK             ++I+
Sbjct: 5    NQNRLTISESHVESFNTFIDHYSFNMVNNIPPVYITYNADSLKSFLNPKDTPYYVKVSII 64

Query: 109  KAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--G 166
               I  P  P         K YP  A+ + + Y  P  VT    +  ++    TKEV  G
Sbjct: 65   SLKIGYPTRPGSECIGTSQKMYPRHAKISHTTYEAPLVVTFGIKF-FESESIITKEVPVG 123

Query: 167  RVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +PIM++S RC+L+ L+  ++I++GE  DE GGYFI+ G+EK++R LI  R N+PIA K 
Sbjct: 124  HIPIMVRSNRCNLKGLSGEEMIKQGEDADEPGGYFIIKGNEKMLRQLIVPRSNYPIAFKS 183

Query: 227  NAWKNRGLLFSDLGVYIRSVKR-DESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLH 285
            ++   + +LF++  +++R     D +  +N LH   N    F    R S+ L+ +   L 
Sbjct: 184  DSNSQKNVLFTEYSIFMRCQSDLDGTCVSNYLHLTINKRCMFRVIVRNSIVLVPLFLLLR 243

Query: 286  E---------------EGIHTQHDSKVFFGQIFKEKLQYDL----------RHL------ 314
                            E      +  V + +IF + +Q D           R+L      
Sbjct: 244  ALLPFLSEDEFKRKLLENCSNNQEMTVLYHRIFLDMVQCDPVLSDIDFIQNRYLYRLGKA 303

Query: 315  --NEV-----------EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
              N+V           E   +++   ++ H     DKF  L  M  KL ++  G +Q +S
Sbjct: 304  CWNQVSQYLHPGSTFEECAHHLIKYFVIIHAKSNLDKFRTLLFMFNKLVNLSNGNIQSES 363

Query: 362  EDSIMLQEIMTGG---------SLYLQL-----------------------LKKEKSGTS 389
             DS   QE++  G         SLYL L                        K+  +G  
Sbjct: 364  YDSFAFQELLLPGQSYSCILKESLYLSLTRIRTVYNLEINNFLNHLKGKRGFKRNYAGVG 423

Query: 390  AVLK-----ESDIYAAFR-------------ASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
             +       E ++   F              A  I   + +FL+TGN     N+  +L Q
Sbjct: 424  KLENLDQDLEEEMVRKFMNSVNLFNFAINKVAPEITKKVHHFLSTGNAF---NTHYELNQ 480

Query: 432  ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
             +GF ++ + IN  R+ SH R+VHRG+ F +MRS++ R+L  + WGFICPVHTPDG PCG
Sbjct: 481  NTGFALVLDRINYHRFSSHLRSVHRGNIFMKMRSTQVRKLLGETWGFICPVHTPDGAPCG 540

Query: 492  LLNHLTTNCQISEYIPSKVLAQIPSVLVSL-GMLPLTPVIQSIPEQALM-------VMLD 543
            LL HL      S+Y         PS L S+   L   P+  S     +        +++D
Sbjct: 541  LLLHL------SQYAKPVTTPNKPSYLNSIKSFLKSQPLHISGSTNKVNGGNDRIPLVVD 594

Query: 544  GRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGR 602
            G  + Y+  +       KL+  K + +  + +  E   ++      G++  +Y+ T PGR
Sbjct: 595  GIPISYVNLEDVEEFYDKLKTSKNLEKFGMCRHFETCAIR---DKFGVFSSIYIMTFPGR 651

Query: 603  MLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY-------------------------- 636
            ++RPV N+    IE IG   Q++  I I   E                            
Sbjct: 652  LVRPVRNIKDNQIELIGPITQLWSTIAINEYELNKSHNKLLDLQANPSAMNKVQVPKPLK 711

Query: 637  ----------PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
                      P +  + EL     LS  A+L P  + NQSPRNMYQCQM KQ++G P  +
Sbjct: 712  SLKDNELDNCPVLYEYVELDMCCILSLSASLTPFSNHNQSPRNMYQCQMLKQSVGIPFHS 771

Query: 687  WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
              Y+   K Y L +   P      Y+ +   ++P G N +VA+I+++G+DMEDAMILNK+
Sbjct: 772  QFYRSEVKTYVLTSLQRPLVATKEYEKMGFQDYPTGVNCVVAIIAHSGFDMEDAMILNKA 831

Query: 747  SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
            S +RG  +  I+KS  I+L S                   QA                 +
Sbjct: 832  SVDRGLFNSFIYKSKVIDLNS-------------------QAS-------------STKE 859

Query: 807  KWQTKDYFGR-DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT---CRYS 862
            +  T +YF   D  +K +  KL  DGL  +G KL +  P Y   +  +N  V     +Y+
Sbjct: 860  RGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGEKLTKNSPFYRIEERGKNNIVNDKVVKYT 919

Query: 863  GKEEMCVEVVRM-SSGFTEGGSVT-----PNCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
             +  +  ++  +  S  T G  ++      + A I  R+ R+P VGDKFASR GQKGI S
Sbjct: 920  EEPAIVDQITLVGKSEITVGDKISCPGLKHDRAIIKLRVLRSPIVGDKFASRHGQKGILS 979

Query: 917  VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
              WP ED+PF ++G+VPD++FNPHG PSRMTIG L
Sbjct: 980  AVWPTEDMPFLENGIVPDVIFNPHGLPSRMTIGKL 1014



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++SGY YYGTE+MY G  G+ +Q  IF G+++YQRLRHMVSDK Q +
Sbjct: 1064 IKSGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVR 1110


>gi|78190671|gb|ABB29657.1| RNA polymerase I second largest subunit [Suberites fuscus]
          Length = 536

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/471 (47%), Positives = 282/471 (59%), Gaps = 48/471 (10%)

Query: 486 DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL-TPVIQSIPEQ---ALMVM 541
           DG PCGLLNHL  +CQ++  +P+ +   +P +LVSLGM PL +P+  S   +    L V+
Sbjct: 1   DGAPCGLLNHLAADCQVTTSVPNTI--HLPRLLVSLGMTPLGSPLPTSHTHKDHHPLPVV 58

Query: 542 LDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           LDGRI+G +    A  L  KLR LK  G EK+P +LEI  +  P    G +PGL+LF+  
Sbjct: 59  LDGRILGEVEALQAKDLAVKLRTLKCWGKEKVPPTLEIGLV--PPLTDGQFPGLFLFSTS 116

Query: 601 GRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPM 660
            RM+RPV NLA  + E IG+FEQV+MDI +  +EA+ G TTH EL +    S +A L P 
Sbjct: 117 ARMMRPVRNLATNSRELIGSFEQVYMDIAVIPEEAHQGHTTHLELDEGIMFSAIATLTPY 176

Query: 661 PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP 720
            D NQSPRNMYQCQM KQTMGTP  ++ Y+   KLYRLQ+P +P  R   Y+   MD +P
Sbjct: 177 SDFNQSPRNMYQCQMAKQTMGTPLQSFPYRMDSKLYRLQSPQAPMVRTSTYNHYSMDEYP 236

Query: 721 MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG 780
           +GTNAIVAVISYTGYDMEDAMILNK+S ERGF H  ++KS  I + S             
Sbjct: 237 LGTNAIVAVISYTGYDMEDAMILNKASVERGFKHANVYKSEVISISS------------- 283

Query: 781 VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLN 840
                                   SD+ +    FG  P +K  E KL  DG   +G  L 
Sbjct: 284 -----------------------PSDRGRPSKMFGILPGDKEAE-KLDQDGFPPIGTLLQ 319

Query: 841 ERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT 900
           E DP YS       R    RY   E   V+ +++     E G      A+I  RI RNP 
Sbjct: 320 EGDPYYSCIDLDTGRSKVARYKSSEPAFVDQIKLLG--NETGDSPLQRAFIKLRICRNPI 377

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKFASRAGQKGICS KWP+E++PFT+SG+VPDI+FNPHGFPSRMTIG +
Sbjct: 378 IGDKFASRAGQKGICSQKWPSENMPFTESGMVPDIIFNPHGFPSRMTIGMM 428



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 15/84 (17%)

Query: 741 MILNKSSYERGFAHGCI-FKSMFIE------------LESGYNYYGTETMYSGVDGSMMQ 787
           M+  KS+   G  H C  FK  F E            +++GYNY+G E +YSG+DG   +
Sbjct: 431 MMAGKSAALHGLCHDCTPFK--FSEDNPAVDHFGKLLVKAGYNYFGNERLYSGIDGREFE 488

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTK 811
           A IF GVV+YQRLRHMVSDK+Q +
Sbjct: 489 ADIFLGVVYYQRLRHMVSDKFQVR 512


>gi|84996561|ref|XP_953002.1| DNA-directed RNA polymerase I, second largest subunit [Theileria
            annulata strain Ankara]
 gi|65303998|emb|CAI76377.1| DNA-directed RNA polymerase I, second largest subunit, putative
            [Theileria annulata]
          Length = 1218

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 311/1067 (29%), Positives = 475/1067 (44%), Gaps = 225/1067 (21%)

Query: 62   NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPI----------------EFEIYGKTLKL 105
            N+  L +   H+ SF+  +D      V +I P+                +   Y   LK+
Sbjct: 5    NQNRLNISESHVESFNTFIDHYSFNMVNNIPPVYITHNPDPLKSFLNPKDIPYY---LKV 61

Query: 106  NIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV 165
            +I+   I  P  P         K YP  A+ T + Y  P  VT    +  ++    TKEV
Sbjct: 62   SIISLKIGYPTRPGSECIGTSQKMYPRHAKTTHTTYEAPLIVTFGVKF-FESESIITKEV 120

Query: 166  --GRVPIMLKSKRCHLR---------NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
              G +PIM++S RC+L+          L+  ++I++GE  DE GGYFI+ G+EK++R LI
Sbjct: 121  PVGHIPIMVRSNRCNLKVKFVDKKFTGLSGEEMIKQGEDLDEPGGYFIIRGNEKMIRQLI 180

Query: 215  NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR-DESATNNVLHFVTNGSARFMFSHRK 273
              R N+PIA K  +   + +LF++  +++R     D +  +N LH   N    F    R 
Sbjct: 181  VPRSNYPIAFKSESNSQKNVLFTEYSIFMRCQSDLDGTCVSNYLHLTINKRCMFRVIVRN 240

Query: 274  SMCLLGMMQSLHE---------------EGIHTQHDSKVFFGQIFKEKLQYDL------- 311
            S+ L+ +   L                 E      +  + + +IF +  Q D        
Sbjct: 241  SVVLVPLFLLLRALLPLISEDEFKRKLLENCSNNQEMTILYHRIFLDMAQCDPVLSDIDF 300

Query: 312  ---RHL--------NEV-----------EICDYMLTNCILPHLDDYWDKFLCLSHMTCKL 349
               R+L        N+V           E   +++   ++ H     DKF  L  M  KL
Sbjct: 301  IQNRYLYRLGKACWNQVSQYLHPGSTFEECAQHLIKYFVIIHAKSNLDKFRTLLFMFNKL 360

Query: 350  FHVVQGMVQLDSEDSIMLQEIMTGG---------SLYLQL-----------------LKK 383
             ++  G +Q +S DS   QEIM  G         SLYL L                 LK 
Sbjct: 361  VNLSNGNIQSESYDSFAFQEIMLAGQSYSCILKESLYLCLTRIRTVYNLEINNFLSHLKG 420

Query: 384  EKS--------GTSAVLK---ESDIYAAFR-------------ASSIESAMTNFLATGNV 419
            ++         G   +L    E ++   F              A  +   + +FL+TGN 
Sbjct: 421  KRGFKRNFTGVGKPEILDQDLEEEMIRKFMNSVNLFNFAINKVAPEVTKKIHHFLSTGNA 480

Query: 420  SAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFI 479
                N+  +L Q++GF I+ + IN  R+ SH R++HRG+ F +MRS++ R+L  + WGFI
Sbjct: 481  F---NTHYELNQSTGFAIVLDRINYHRFSSHLRSIHRGNIFMKMRSTQVRKLLGETWGFI 537

Query: 480  CPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI------ 533
            CPVHTPDG PCGLL HL      S+Y  +      PS L S+     +  + +       
Sbjct: 538  CPVHTPDGAPCGLLLHL------SQYAKAVTTPNKPSYLNSIKSFLKSQRLHNTGSTNKV 591

Query: 534  --PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKRPEKGMGL 590
                  + +++DG  V Y+  +       KLR  K + +  + K  E   ++      G+
Sbjct: 592  NGGNDRIPLVVDGIPVAYVDVEEVEEFYDKLRTAKNLEKFGMCKHFETCAMR---DKFGV 648

Query: 591  YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKE---------------- 634
            +  +Y+ T PGR++RPV N+    IE IG   Q++  I I   E                
Sbjct: 649  FSSIYIMTFPGRLVRPVRNIKDNQIELIGPITQLWSTIAINEYELNKSHNKLLSLQSNPS 708

Query: 635  --------------------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
                                  P +  + EL     LS  A+L P  + NQSPRNMYQCQ
Sbjct: 709  AMNKVQVPKVVKSLKDNELDNCPVLYEYVELDMCCILSLSASLTPFSNHNQSPRNMYQCQ 768

Query: 675  MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
            M KQ++G P  +  Y+   K Y L +   P      Y+ +   ++P G N +VA+I+++G
Sbjct: 769  MLKQSVGIPFHSQFYRSEVKTYVLTSLQRPLVATKEYEKMGFQDYPTGVNCVVAIIAHSG 828

Query: 735  YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
            +DMEDAMILNK+S +RG  +  I+KS  ++L S Y+                        
Sbjct: 829  FDMEDAMILNKASVDRGLFNSFIYKSKVVDLNSQYSSN---------------------- 866

Query: 795  VHYQRLRHMVSDKWQTKDYFGR-DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
                       ++  T +YF   D  +K +  KL  DGL  +G KL +  P Y   ++ +
Sbjct: 867  ----------KERGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGEKLTKNSPFYRIEEKGK 916

Query: 854  NRYVTCR---YSGKEEMCVEVVRM-SSGFTEGGSVT-----PNCAYIGYRIQRNPTVGDK 904
            N  +  R   Y+ +  +  ++  +  S  T G  ++      + A I  R+ R+P VGDK
Sbjct: 917  NNIMNDRVVKYTDEPAIVDQITLVGKSDLTVGDKISCPGLKHDRAIIKLRVLRSPIVGDK 976

Query: 905  FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            FASR GQKGI S  WP ED+PF ++G+VPD++FNPHG PSRMTIG L
Sbjct: 977  FASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHGLPSRMTIGKL 1023



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + +GY YYGTE+MY G  G+ +Q  IF G+++YQRLRHMVSDK Q +
Sbjct: 1073 ISAGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVR 1119


>gi|401825637|ref|XP_003886913.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
           50504]
 gi|392998070|gb|AFM97932.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
           50504]
          Length = 1046

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 304/941 (32%), Positives = 451/941 (47%), Gaps = 160/941 (17%)

Query: 72  HIASFDFMLDEG-LDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYY 130
           HI +++ + DE  LD  V  I P+   I G+T K+ +    IS P +          + +
Sbjct: 10  HIEAYNAIFDENVLDNLVAGIPPL---IRGRT-KIVVEDIHISPPYLSDKDHISVDRRLF 65

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R+    Y G   V V+  +D K   T  K  G  PIM++SK CHL+N+     +  
Sbjct: 66  PRECRERGLTYRGKIAVRVSLFYDSKHVMTEDKFAGYFPIMVRSKLCHLKNVESMNRV-- 123

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
           GE  +E GGYFIV G +K VRL I  +RNH  A K+   + +   F+  GV +R V +DE
Sbjct: 124 GEDEEEIGGYFIVNGIDKFVRLGIIQKRNHIFAFKQ---RKKESFFTGYGVSMRCVGKDE 180

Query: 251 SATNNVLHFVTNGSARFMFSHRKS-------MCLLGMMQSLHEE-------GIHTQHDSK 296
               N L++ T+G+      +++S       + L  ++ +  EE       G    H  K
Sbjct: 181 IGHLNSLYYCTDGNVIIKIFYKRSTFLFPLVLILRALVNTTDEELFEALGGGDKAIHLLK 240

Query: 297 VFFG-QIFK--EKLQY-DLRHLNEVEI------CDYMLTNCILPHLDDYWDKFLCLSHMT 346
            F    +F   E L Y   R L  +++       + +L+  +  HL    DKF  L    
Sbjct: 241 CFAEYNVFSRTECLDYIGSRFLAVIDVGTKVGAAEEVLSKYVASHLSSNLDKFNFLVLAA 300

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-----------YLQLLK------------- 382
            KLF  V   +  D  DS    E++T   +           Y++L +             
Sbjct: 301 KKLFSFVNNEIAEDDFDSSGNHELLTVTQILSSFIRDKIEEYMKLFRIICRKAYFKNAGG 360

Query: 383 ----KEKSGTSAVLKE-----SDIYAAFRAS--SIESAMTNFLATGNVSAGKNSTLQLMQ 431
               +E  G    L E     ++I   F+ +  SI   +  FL  GN  A  +S   ++Q
Sbjct: 361 KRKLEEDEGVEDGLYEDKLDLTEIKEVFKKTPISIGHKIDMFLYGGN--AVFSSCSDILQ 418

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCG 491
            +GFVI AE IN  +Y+++ R+++RGS+   +  ++ R+LR ++WGFICPVHTPDG PCG
Sbjct: 419 KTGFVITAERINFYKYLTNLRSINRGSHISSL-VTDVRKLRPESWGFICPVHTPDGAPCG 477

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP-LTPVIQSIPEQALMVMLDGRIVGYI 550
           +L H+    ++     SKV      +    G++P +      +P     V++DGRI+G  
Sbjct: 478 ILLHMAKGAEVV----SKVEDFDTDIFFEFGVVPAIRGAKMDVP-----VLVDGRIIGS- 527

Query: 551 LDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
                +S    +RML+    K    +EIVY + P+    ++P + +F   GR  R VMN 
Sbjct: 528 ----TSSPSILVRMLREYKVKNNLKIEIVYSEGPK----MFPSVCVFNSVGRFARKVMNR 579

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
              + EWIG  EQVF+ I +   E   G   + E+ KT+ L  LA L P  D NQSPRNM
Sbjct: 580 KLNSEEWIGIMEQVFLSIDV---EEGKGEGDYYEIDKTNILGILAELTPYSDHNQSPRNM 636

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQCQM KQ +G P  N + +    +Y +    SP  R   YD +   N+P+G N +VAV+
Sbjct: 637 YQCQMAKQAIGIPAYNIKTRTDSSMYTVNYLQSPIVRTKGYDLV--KNYPVGINCMVAVL 694

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           SYT YDMEDA++++K+S +RG   G I+K+  + LE G   Y T  +  G        +I
Sbjct: 695 SYTAYDMEDALVISKNSIDRGLFTGYIYKTEKVSLEKG--RYFTHLLPVG-------ERI 745

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK 850
             G+V Y+ +           D  GR+  +K  E      G++         D +  +  
Sbjct: 746 EKGLVLYRYV-----------DQEGREYESKYFE---AEGGVI---------DSVRVFDN 782

Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
           +S  R  T          + +VR                        NP++GDKF+SR G
Sbjct: 783 DSGERCAT--------FTIRIVR------------------------NPSIGDKFSSRHG 810

Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           QKG+CS+ WP  D+PFT+SG VPDI+ NPH FPSRMTIG L
Sbjct: 811 QKGVCSMNWPTVDMPFTESGYVPDIIINPHAFPSRMTIGML 851



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 6/76 (7%)

Query: 742 ILNKSSYERGFAHGCIFKSMFIEL------ESGYNYYGTETMYSGVDGSMMQAQIFFGVV 795
           + + +++ERG   G   K+   EL      E G+NYYG E MYSG+ G+ ++  IF GVV
Sbjct: 866 VQDGTAFERGLLSGEDEKNRRKELLCKELQEHGFNYYGNEPMYSGISGNELRVDIFVGVV 925

Query: 796 HYQRLRHMVSDKWQTK 811
           +YQRL+HMV DK+Q +
Sbjct: 926 YYQRLKHMVGDKFQVR 941


>gi|449511582|ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymerase I subunit
           RPA2-like, partial [Cucumis sativus]
          Length = 948

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 262/726 (36%), Positives = 371/726 (51%), Gaps = 96/726 (13%)

Query: 63  EFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF--EIYGKTLKLNIVKAAISEPKVPAG 120
           E L  L   HI SFD ++D GL+  +  I P+E       K L++ + K  +  P+    
Sbjct: 12  EALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERN 71

Query: 121 PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR 180
              I      P E RQ +  Y+G F   V + +D KA        G+ PIMLKSK CHLR
Sbjct: 72  LRTIR-EALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKLNFGQFPIMLKSKLCHLR 130

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLG 240
            L P +L+   E   E GGYF++ G E++VRLLI  +RN+P ++ RN++ +R   ++D  
Sbjct: 131 GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKA 190

Query: 241 VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHD------ 294
           V IR V+ D+S+    L+++ NGSAR  F  +    LL +   L      T H+      
Sbjct: 191 VVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLT 250

Query: 295 ----------------------SKVFFGQI-------FKEKLQYDLRHLNEV-------- 317
                                 +K+   ++        ++ L +  +H   V        
Sbjct: 251 SCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEK 310

Query: 318 --EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG- 374
              + D +L + I  HLD+ +DKF  L  M  KLF ++      D+ DS+  Q+++  G 
Sbjct: 311 FSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQ 370

Query: 375 --SLYLQ------------LLKKEKSGTSAVLKESDIYAAFR------ASSIESAMTNFL 414
             +LYL+            LL+ E S  S   +   +    +      +  + SA+ N L
Sbjct: 371 LITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENML 430

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
            TG +     + L L Q +GF + AE +N +R++SHFRAVHRG+ F  +R++  R+L  +
Sbjct: 431 KTGRLVT--QTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPE 488

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS--------KVLAQIPSVLVSLGMLPL 526
           +WGF+CPVHTPDG PCGLLNHLT+ C+I+ +  S        K+   I SVL+++GM+P 
Sbjct: 489 SWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPS 548

Query: 527 TP-VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRP 584
            P ++Q      L V+LDGRIVGYI       +V  LR LK++    IP  LE+ Y+  P
Sbjct: 549 LPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYV--P 606

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAG-----NIEWIGTFEQVFMDI-CIT-----MK 633
               G YPGLYLFT P R +RPV NL+       NIE IG FEQVFM+I C        K
Sbjct: 607 LSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRK 666

Query: 634 EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
           + +P   TH E+  T  LS +ANL P  D NQSPRNMYQCQM KQTM       RY+   
Sbjct: 667 DEFPA--THEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQ 724

Query: 694 KLYRLQ 699
           KLY LQ
Sbjct: 725 KLYHLQ 730


>gi|67624195|ref|XP_668380.1| DNA-directed RNA polymerase I polypeptide 2 (RNA polymerase I subunit
            2) [Cryptosporidium hominis TU502]
 gi|54659575|gb|EAL38145.1| DNA-directed RNA polymerase I polypeptide 2 (RNA polymerase I subunit
            2) [Cryptosporidium hominis]
          Length = 1281

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/749 (33%), Positives = 371/749 (49%), Gaps = 153/749 (20%)

Query: 318  EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY 377
            E   +++ N +L HL+++  K  CL  M  KL  +    ++ +S DS   QE+++ G+LY
Sbjct: 335  EAGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKLQLNEIREESIDSFAYQELLSPGNLY 394

Query: 378  LQLLK--------------------------KEKSGTSAVLKESDIYAAFRA---SSIES 408
              L K                          KE    + +L+++  + +  +   S I  
Sbjct: 395  SALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGANLLRDTAYFKSVLSKNISMIPK 454

Query: 409  AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
             +  F+ATGNV   K + L L Q SG+ ++A+ +N  R++SHFRAVHRG +F  M++++ 
Sbjct: 455  RLQYFMATGNV---KTTQLDLQQLSGWTVVADRLNFNRFLSHFRAVHRGQFFTTMKTTDV 511

Query: 469  RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC-QISEYIPSKVLAQIPSVLVS------- 520
            R+L  + WGF+CPVHTPDG PCGLL HL+ +C  ++++   + L ++ + L+S       
Sbjct: 512  RKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQWDSQETLRRLRNYLISHGISCDD 571

Query: 521  -LGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
             LG L  T  I+S            +++ VMLDGR++ +I  +       KLR LK    
Sbjct: 572  GLGSLSSTWGIESSSRDDLYSPDLTKSIPVMLDGRVLFHIPREDFMIWENKLRTLKWQTN 631

Query: 571  K--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI 628
               +P   EI  +  P+ GM  + G+Y+FT PGR++RP+M+L    ++WIG   Q +M+I
Sbjct: 632  PSVLPVHAEIACVP-PDSGM--FSGIYIFTAPGRLVRPIMHLETAQVDWIGPLGQPWMNI 688

Query: 629  CITMKE---------------------------------------------AYPGITTHR 643
             +T +E                                             + P   TH 
Sbjct: 689  GVTEEETRKSTKLLEIQKRLIGISDTESEEQLKNDLKALKKLIKDNDRVLSSVPVNYTHM 748

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            EL  +  LS  A+LIP    NQSPRNMYQCQM KQTMGTPCLN+ Y+   K+YRL TP  
Sbjct: 749  ELHPSTILSVTASLIPYAHHNQSPRNMYQCQMLKQTMGTPCLNYPYRTDNKMYRLLTPQE 808

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P      Y +     +P GTNAIVAV+SY+GYDMEDAMILNKSSY+RG  H C++K+  I
Sbjct: 809  PTIITKGYSSFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMFHACVYKTKII 868

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
                      +    S    S  ++  F  +                       P  + +
Sbjct: 869  ----------SAAPPSATKKSDAESYFFHNI----------------------GPDGELV 896

Query: 824  EDKLGPDGLVYVGAKLNERDPMYSYWKES-----ENRYVTCRYSGKEEMCVEVVRMSSGF 878
              +L  DGL  +G +L +  P+    +        N  +   +  +     ++ R++SG 
Sbjct: 897  VKELSADGLPNIGQRLTKGSPICRVERTGSGGGPSNATIQTYHDDEVAFVEKINRIASGI 956

Query: 879  T----------------EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
            +                   S       I  RI RNP VGDKFASR GQKGI S+ WP E
Sbjct: 957  SIELQQDSLSGGGGDGASSSSGYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQE 1016

Query: 923  DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            ++PF++SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 1017 NMPFSESGMVPDILFNPHGFPSRMTIGML 1045



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 21/215 (9%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPI---------EFEIYG-----KTLKLNIVKA 110
           LL+   PHI SF+  L  GL   V+++  I         + E+       + L++ +  A
Sbjct: 9   LLSAVWPHIESFNTFLSVGLKNIVKNLPKIYVDSGFIQDDCELNAAYSPAEYLRIGVTSA 68

Query: 111 AISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE---VGR 167
            I +P    G       K  P  AR     YS P  + + +     +  T +K     G 
Sbjct: 69  KIGKPIF--GYSESSGTKLTPQHARNGHISYSAP--LWLEFEGYNSSLDTVSKHSIYAGT 124

Query: 168 VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           +PIM+KS  CHL  L   +L+E+GE P+E GGYFI+ G+E+++R +I  R N+PI +KR 
Sbjct: 125 IPIMVKSSNCHLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRP 184

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTN 262
            +       S+  V +RS++ D ++T N L+  ++
Sbjct: 185 RFATFDSFGSEYAVLMRSLRDDGTSTANYLYGTSD 219



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +G+ YYG E +Y+G+ G  +   IF GV++YQRLRHMV+DK Q +     D   +     
Sbjct: 1103 AGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVRATGPIDALTRQPVKG 1162

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMC 868
                G +  G    ERD + SY   S   +R + C    +  +C
Sbjct: 1163 RKRHGGIRFGEM--ERDSLISYGVSSILVDRLLICSDEHRAYVC 1204


>gi|66362272|ref|XP_628100.1| RNA polymerase 1 beta subunit [Cryptosporidium parvum Iowa II]
 gi|46227419|gb|EAK88354.1| RNA polymerase 1 beta subunit [Cryptosporidium parvum Iowa II]
          Length = 1281

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/749 (33%), Positives = 369/749 (49%), Gaps = 153/749 (20%)

Query: 318  EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY 377
            E   +++ N +L HL+++  K  CL  M  KL  +    ++ +S DS   QE+++ G+LY
Sbjct: 335  EAGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKLQLNEIREESIDSFAYQELLSPGNLY 394

Query: 378  LQLLK--------------------------KEKSGTSAVLKESDIYAAFRA---SSIES 408
              L K                          KE      +L+++  + +  +   S I  
Sbjct: 395  SALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGVNLLRDTAYFKSVLSKNISMIPK 454

Query: 409  AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
             +  F+ATGNV   K + L L Q SG+ ++A+ +N  R++SHFRAVHRG +F  M++++ 
Sbjct: 455  RLQYFMATGNV---KTTQLDLQQLSGWTVVADRLNFNRFLSHFRAVHRGQFFTTMKTTDV 511

Query: 469  RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC-QISEYIPSKVLAQIPSVLVS------- 520
            R+L  + WGF+CPVHTPDG PCGLL HL+ +C  ++++   + L ++ + L+S       
Sbjct: 512  RKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQWDSQETLRRLRNYLISHGISCDD 571

Query: 521  -LGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
             LG L  T  I+S            +++ VMLDGR++ +I  +       KLR LK    
Sbjct: 572  GLGSLSSTWGIESSSRDDLYSPDLTKSIPVMLDGRVLFHIPREDFMVWENKLRTLKWQTN 631

Query: 571  K--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI 628
               +P   EI  +  P+ GM  + G+Y+FT PGR++RP+M+L    ++WIG   Q +M+I
Sbjct: 632  PSVLPVHAEIACVP-PDSGM--FSGIYIFTAPGRLVRPIMHLETAQVDWIGPLGQPWMNI 688

Query: 629  CITMKE---------------------------------------------AYPGITTHR 643
             +T +E                                             + P   TH 
Sbjct: 689  GVTEEETRKSTKLLEIQKRLIGISDTESEEQLKNDLKALKKLIKDNDRVLSSVPVNYTHM 748

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            EL  +  LS  A+LIP    NQSPRNMYQCQM KQTMGTPCLN  Y+   K+YRL TP  
Sbjct: 749  ELHPSTILSVTASLIPYAHHNQSPRNMYQCQMLKQTMGTPCLNHPYRTDNKMYRLLTPQE 808

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P      Y +     +P GTNAIVAV+SY+GYDMEDAMILNKSSY+RG  H C++K+  I
Sbjct: 809  PTIITKGYSSFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMFHACVYKTKII 868

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
                      +    S    S  ++  F  +                       P  + +
Sbjct: 869  ----------SAAPPSATKKSDAESYFFHNI----------------------GPDGELV 896

Query: 824  EDKLGPDGLVYVGAKLNERDPMYSYWK-----ESENRYVTCRYSGKEEMCVEVVRMSSGF 878
              +L  DGL  +G +L +  P+    +        N  +   +  +     ++ R++SG 
Sbjct: 897  VKELSADGLPNIGQRLTKGSPICRVERIGSGGGPSNATIQTYHDDEVAFVEKINRIASGI 956

Query: 879  T----------------EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
            +                   S       I  RI RNP VGDKFASR GQKGI S+ WP E
Sbjct: 957  SIELQQDSLSGGGGDGASSSSGYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQE 1016

Query: 923  DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            ++PF++SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 1017 NMPFSESGMVPDILFNPHGFPSRMTIGML 1045



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 21/215 (9%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPI---------EFEIYG-----KTLKLNIVKA 110
           LL+   PHI SF+  L  GL   V+++  I         + E+       + L++ +  A
Sbjct: 9   LLSAVWPHIESFNTFLSVGLKNIVKNLPKIYVDSGFIQDDCELNAAYSPAEYLRIGVTSA 68

Query: 111 AISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE---VGR 167
            I +P    G       K  P  AR     YS P  + + +     +  T +K     G 
Sbjct: 69  KIGKPIF--GNSESSGTKLTPQHARNGHISYSAP--LWLEFEGYNSSLDTVSKHSIYAGT 124

Query: 168 VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           +PIM+KS  CHL  L   +L+E+GE P+E GGYFI+ G+E+++R +I  R N+PI +KR 
Sbjct: 125 IPIMVKSSSCHLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRP 184

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTN 262
            +       S+  V +RS++ D ++T N L+  ++
Sbjct: 185 RFATFDSFGSEYAVLMRSLRDDGTSTANYLYGTSD 219



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +G+ YYG E +Y+G+ G  +   IF GV++YQRLRHMV+DK Q +     D   +     
Sbjct: 1103 AGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVRATGPIDALTRQPVKG 1162

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMC 868
                G +  G    ERD + SY   S   +R + C    +  +C
Sbjct: 1163 RKRHGGIRFGEM--ERDSLISYGVSSILVDRLLICSDEHRAYVC 1204


>gi|355565994|gb|EHH22423.1| hypothetical protein EGK_05684 [Macaca mulatta]
          Length = 1039

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/413 (50%), Positives = 259/413 (62%), Gaps = 40/413 (9%)

Query: 540 VMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFT 598
           V+LDG +VG++  ++A  +   LR  K++ EK IP  +E+V +    K   LYPGL+LFT
Sbjct: 460 VLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFT 518

Query: 599 GPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLI 658
            P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL     LS +AN I
Sbjct: 519 TPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFI 578

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMDN
Sbjct: 579 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 638

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
           +P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E + 
Sbjct: 639 YPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIK 690

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK 838
            G D S++                           FG  P +  +  KL  DGL ++GAK
Sbjct: 691 QG-DSSLV---------------------------FGIKPGDPRILQKLDDDGLPFIGAK 722

Query: 839 LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRN 898
           L   DP YSY   +        Y  KE   V+ +++ S  T  G     C  I  R+ RN
Sbjct: 723 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVPRN 780

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           PT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 781 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 833



 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/392 (34%), Positives = 199/392 (50%), Gaps = 41/392 (10%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S P+LK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPTLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVS-VYPAECRGRRSTYRGKL-TDINWAVNGIS 125

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 126 KGIIKQFLGYVPIMVKSKLCNLHSLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 185

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++   ++   V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 186 RNFPIAMIRPKWKTRGPGYTQYSMH--CVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 243

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G 
Sbjct: 244 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGG 303

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 304 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 362

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK 393
            DS++ QE++T G L+L  LK++  G    +K
Sbjct: 363 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIK 394



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 873 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 923


>gi|39644698|gb|AAH04882.4| POLR1B protein [Homo sapiens]
          Length = 582

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/413 (50%), Positives = 259/413 (62%), Gaps = 40/413 (9%)

Query: 540 VMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFT 598
           V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +    K   LYPGL+LFT
Sbjct: 3   VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFT 61

Query: 599 GPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLI 658
            P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+EL     LS +AN I
Sbjct: 62  TPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFI 121

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMDN
Sbjct: 122 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 181

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
           +P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E + 
Sbjct: 182 YPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIK 233

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK 838
            G D S++                           FG  P +  +  KL  DGL ++GAK
Sbjct: 234 QG-DSSLV---------------------------FGIKPGDPRVLQKLDDDGLPFIGAK 265

Query: 839 LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRN 898
           L   DP YSY   +        Y  KE   V+ +++ S  T  G     C  I  R+ RN
Sbjct: 266 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVPRN 323

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           PT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 324 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 376



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 416 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 466


>gi|303388613|ref|XP_003072540.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303301681|gb|ADM11180.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 1047

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 293/949 (30%), Positives = 444/949 (46%), Gaps = 170/949 (17%)

Query: 69  GAPHIASFDFMLDEG-LDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
              HI ++D + +E  LD  V +I P+   I GKT K+ +    I  P +          
Sbjct: 7   AKAHIEAYDAIFEEHILDNLVANIPPL---IRGKT-KIVVEDIHIYPPFLSDKDHISVDR 62

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
           + +P E R+    Y G   + ++   D K   T  K  G  PIM++S  CHLRN      
Sbjct: 63  RLFPWECRERGLTYKGKIIIRISLFHDNKHIMTEDKLAGYFPIMVRSSLCHLRNAKNMNK 122

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
           +  GE  DE GGYFI+ G +K +R  I  +RNH  A K    + R   F+  GV +R V 
Sbjct: 123 V--GEDEDEVGGYFIINGFDKFIRFTITQKRNHIFAFK---TRKRESFFTGYGVSMRCVG 177

Query: 248 RDESATNNVLHFVTNGSARFMFSHRKS-------MCLLGMMQSLHEE-------GIHTQH 293
           +DE    N L++ T+G+      +R+S       + L  ++ +  EE       G    H
Sbjct: 178 KDEIGHMNNLYYCTDGNVVLKMYYRRSEFFFPLVLILRALVNTTDEELYEALGQGERAIH 237

Query: 294 DSKVFFG-QIF--KEKLQYDLRHLN-------EVEICDYMLTNCILPHLDDYWDKFLCLS 343
             K F    +F  KE L Y     +       ++E+ + +L+  I  HL  + DKF  L 
Sbjct: 238 LLKCFAEYNVFSRKECLDYIGSRFSSMANFGSKIEVAEEILSKYIASHLSSHLDKFNFLI 297

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK--------------------- 382
               KLF  V   +  +  DS    E+ T   +   LL+                     
Sbjct: 298 LAAKKLFSFVNNEIAEEDFDSSGNHELHTTTQILSSLLRDKIEEFMRSLPIAYKKAYLKS 357

Query: 383 -------KEKSGTSAV----------LKESDIYAAFRASSIESAMTNFLATGNVSAGKNS 425
                  +E S +  V          LK  +I+      +I   +  FL++GN+     S
Sbjct: 358 EGEKRRLEEDSDSEVVDGIYEDKLDILKIKEIFKK-AVMNIGQKVELFLSSGNIFLSCCS 416

Query: 426 TLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTP 485
              ++Q +G  I  E  N  RY  + R+++RG++   +  +  R+LR ++WGFICPVHTP
Sbjct: 417 --DILQTTGLSITLERTNFYRYFGNLRSINRGTHIPSL-VTRIRKLRPESWGFICPVHTP 473

Query: 486 DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP-LTPVIQSIPEQALMVMLDG 544
           DG  CG+L H+     I     S+       +L  LG++P +  V   +P     V++DG
Sbjct: 474 DGACCGVLLHMAKGADI----VSRANDFDTEILFELGVVPTIRGVRMEVP-----VLVDG 524

Query: 545 RIVGYILDQIATSLVPK--LRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGR 602
           +++G       ++  P+  +RML+    K    +EIVY     +G  ++  + +F+  GR
Sbjct: 525 KVIG-------STSSPQFLVRMLREYKVKNRLKIEIVY----SEGTKVFSSVCIFSSMGR 573

Query: 603 MLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPD 662
            +R VMN   G+ EW+G  EQV ++I +   E       + E+ K++ L  +A L P  +
Sbjct: 574 FIRKVMNQRLGSEEWVGIMEQVSLNIDLERGEG-----DYHEIDKSNILGIIAGLTPYSE 628

Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
            NQSPRNMYQCQM KQ MG    N + +    +Y +    SP  R   YD +   ++P+G
Sbjct: 629 HNQSPRNMYQCQMAKQAMGFSAYNMKTRIDHTMYNINYLQSPLVRTKGYDMVK--DYPLG 686

Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
            N +VAV+SYT YDMEDA+++NKSS ERG   G I+K+  I L  GY++     +Y    
Sbjct: 687 INCMVAVLSYTAYDMEDALVINKSSIERGLFTGLIYKTERIVLNKGYSF-----LYL--- 738

Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER 842
                                                  ++ +K+  D ++Y    L +R
Sbjct: 739 --------------------------------------PSVGEKIQKDSILYKYVDLEDR 760

Query: 843 DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
           +            Y T RY   E+  ++ VR+    ++ G     CA +  R+ RNPT+G
Sbjct: 761 E------------YQT-RYLETEDGVIDSVRVFE--SDAGE---RCALLTIRMVRNPTIG 802

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG+CSV WP+ D+PFT+SG VPDI+ NPH FPSRMTIG L
Sbjct: 803 DKFSSRHGQKGVCSVHWPSIDMPFTESGYVPDIIINPHAFPSRMTIGML 851



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+NYYG E MYSGV G+  +  +F GVV+YQRL+HMV DK+Q +
Sbjct: 899 GFNYYGNEPMYSGVSGNEFRVDVFVGVVYYQRLKHMVGDKFQVR 942


>gi|403224027|dbj|BAM42157.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1204

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 301/1013 (29%), Positives = 453/1013 (44%), Gaps = 208/1013 (20%)

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           +K++++   I  P  P         K YP  A+ + + Y  P  VT    ++ ++    T
Sbjct: 30  VKVSVISLKIGYPMRPGSECIGTSQKMYPWHAKISHTTYEAPLVVTFGIKFN-ESESIIT 88

Query: 163 KEV--GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
           KEV  G +P+M++S RC+L+ L+  +++++GE  DE GGYFI+ G+E+++R LI  R N+
Sbjct: 89  KEVPVGHIPVMVRSNRCNLKGLSGEEMVKQGEDADEPGGYFIIKGNERMIRNLIVPRSNY 148

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKR-DESATNNVLHFVTNGSARFMFSHRKSMCLL- 278
           PIA K  +  N+ LLF++  +++R     D     N LH  TN    F    R S  L+ 
Sbjct: 149 PIAFKSESNLNKNLLFTEYAIFMRCQSDLDGCFVTNYLHLTTNKRCMFRVIVRNSTVLVP 208

Query: 279 ------GMMQSLHEE--------GIHTQHDSKVFFGQIFKEKLQYD-------------L 311
                  +M  + EE              +  V +  I+ +    D             L
Sbjct: 209 LFLLLRALMPYISEEEFRRKIMENCRNNREMAVLYNIIYMDMAHCDPVLSEIDFIQNRYL 268

Query: 312 RHLNEV---EICDYM-----LTNCILPHLDDYW---------DKFLCLSHMTCKLFHVVQ 354
             L +V   +I  Y+        C L HL  Y+         DKF  L  M  KL+ + Q
Sbjct: 269 YRLGKVCWSQINQYLHPGSTFEECAL-HLIKYFVVIHAASNTDKFNTLMFMLNKLYDLSQ 327

Query: 355 GMVQLDSEDSIMLQEIMTGG---------SLYLQLL------------------------ 381
           G +Q +S DS   QEI+  G         SLYL L                         
Sbjct: 328 GNIQSESYDSFAFQEILLPGHSYSCILKESLYLCLTRIRTIYNMEINNFLNHLKGGRGSK 387

Query: 382 KKEKSGTSAVLKES--DIYAAFR----------------ASSIESAMTNFLATGNVSAGK 423
           K+  +G   +  E+  D     R                A  I   +  FL+TGN +   
Sbjct: 388 KRNYAGAEKMESEAGEDQEGLIRNFMNSVQLFNFAINKVAPEIPRKIQYFLSTGNAT--- 444

Query: 424 NSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
           NS  +L Q SGF I+ + IN  R+ SH R+VHRG+ F +M S++ R+L  + WGFICPVH
Sbjct: 445 NSHYELNQNSGFTIVLDRINYHRFASHLRSVHRGNIFTKMHSTQVRKLLGETWGFICPVH 504

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA------ 537
           TPDG PCGLL HL      ++Y  +      PS L ++     +    +    A      
Sbjct: 505 TPDGAPCGLLLHL------AQYAKAVTTPNRPSYLEAIKAFLKSQSTHTTNYNAGNGNSY 558

Query: 538 ------------LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
                       + +++DG    YI  +        L+  K + EK             +
Sbjct: 559 RDDGHLEGKDGRIPLVVDGIPQCYINLRDVEGFYDSLKSAKNI-EKYGMCAHFETCAIRD 617

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT---MKEAYPGITTH 642
           K  G    +Y+ T PGR++RPV N+    IE+IG   Q++  I I    + +++  +  H
Sbjct: 618 K-YGAVSCIYIMTFPGRLVRPVKNVKDNRIEYIGPITQLWSTIAINEDELNKSHEKLKNH 676

Query: 643 RELSKTD-----------------------------------FLSNLANLIPMPDCNQSP 667
           ++ S ++                                    LS  A+L P  + NQSP
Sbjct: 677 KDESTSERDVTVDSQNYKIGDNYKELDNCPVVYEYMELDMCCILSVTASLTPFSNHNQSP 736

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RNMYQCQM KQ++G P     Y+   K Y L +   P      Y+ +  +++P G N +V
Sbjct: 737 RNMYQCQMLKQSVGLPFHAQVYRSEVKTYVLTSLQKPLVYTKEYEKMAFEDYPTGVNCVV 796

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
           A+I+++G+DMEDAMILNK+S +RG  +  I+K+  ++L +            G +G +  
Sbjct: 797 AIIAHSGFDMEDAMILNKASVDRGLFNSFIYKTKVVDLNA---------QSGGKEGKVGH 847

Query: 788 AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS 847
            + F                    +  G D  NK +  +L  DGL  +G KL +  P+  
Sbjct: 848 VEYF--------------------NNLGSD--NKPIVKRLDTDGLPKIGEKLVKNSPICR 885

Query: 848 YWKESENRYVTCRY--SGKEEMCVEVVRM--SSGFTEGGSVT-PNCAY----IGYRIQRN 898
             ++  N  +  R     +E   V+ V +   S  T G  ++ P   Y    I  RI R+
Sbjct: 886 IEEKGRNNLINDRVIKYTEETAVVDHVTLVGQSELTVGDKISCPGLKYGRALIKLRILRS 945

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P VGDKFASR GQKGI S  WP ED+PF ++G+VPD++FNPHG PSRMTIG L
Sbjct: 946 PIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHGLPSRMTIGKL 998



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 37/47 (78%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            LE+GY YYGTE+MY G  G+ +Q  IF G+++YQRLRHMVSDK Q +
Sbjct: 1033 LEAGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVR 1079


>gi|67678361|gb|AAH96748.1| POLR1B protein, partial [Homo sapiens]
          Length = 594

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/413 (50%), Positives = 259/413 (62%), Gaps = 40/413 (9%)

Query: 540 VMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFT 598
           V+LDG +VG++   +A  +   LR  K++ EK IP  +E+V +    K   LYPGL+LFT
Sbjct: 15  VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFT 73

Query: 599 GPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLI 658
            P R++RPV NLA G  E IGT EQ+FM++ I   E + G+TTH+EL     LS +AN I
Sbjct: 74  TPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFI 133

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMDN
Sbjct: 134 PFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN 193

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
           +P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E + 
Sbjct: 194 YPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIK 245

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK 838
            G D S++                           FG  P +  +  +L  DGL ++GAK
Sbjct: 246 QG-DSSLV---------------------------FGIKPGDPRVLQELDDDGLPFIGAK 277

Query: 839 LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRN 898
           L   DP YSY   +        Y  KE   V+ +++ S  T  G     C  I  R+ RN
Sbjct: 278 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVPRN 335

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           PT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 336 PTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 388



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 428 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 478


>gi|402467026|gb|EJW02400.1| hypothetical protein EDEG_03169 [Edhazardia aedis USNM 41457]
          Length = 1197

 Score =  381 bits (978), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/738 (33%), Positives = 371/738 (50%), Gaps = 148/738 (20%)

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDK 338
            ++ S ++  +++Q +   + G  FK  +  + R  ++ E    ++   I  HL+   DK
Sbjct: 308 NLILSFNDMNLNSQQECINYIGARFKTIV--NEREYSDQEAFTEVINRFIAIHLNKKEDK 365

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK----- 393
           F  L     KL+ +V   +  D+ D    QE+ T   ++  LLK++      +LK     
Sbjct: 366 FNFLIVGIRKLYKLVNNKIP-DNPDLQSTQELFTTCQIFATLLKEKMYEVLRMLKPVLSR 424

Query: 394 ESDIYAAFRASSIESA-------MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
           E          +I+ A       + + + TGN S   +S     + +G   +AE IN  R
Sbjct: 425 EKRFSVDVVTKAIKKANMDIGVKIEHLITTGNASIKMSS--DFTEKAGNTTLAERINFFR 482

Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
           Y+SHFR+V+RG++F +++++  R+LR ++WGF CPVHTPDG+PCG++ HL          
Sbjct: 483 YLSHFRSVNRGNFFAQLKTTTIRKLRPESWGFYCPVHTPDGSPCGIITHLAHT------- 535

Query: 507 PSKVLAQ----IPSVLVSLGMLPLTPVIQSIPEQALM-VMLDGRIVGYILDQIATSLVPK 561
            +KV++Q        L  LG++PL  +   I +Q+ + V LDGR++GY+ D  +   V K
Sbjct: 536 -TKVISQPTFFDEKFLFDLGVIPL--LRGCIKKQSFIEVFLDGRLMGYVDDFFSVDFVNK 592

Query: 562 LRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
           LR  +        ++EIV++         YPG+++F   GR++RPV+N ++  +E+IG  
Sbjct: 593 LRKHR---ADFKLTMEIVFVPHDSHEKSAYPGIFIFNSRGRLMRPVLN-SSDQVEFIGIM 648

Query: 622 EQVFMDI-------------------------CI---------------------TMKEA 635
           EQVF+ I                         C                      T+K++
Sbjct: 649 EQVFLHIKSAQKNSIIKDYTNSLAEKNLEKQSCANSTDNIDKLLTENNFQININNTIKQS 708

Query: 636 YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
                +++E   TDFLS +AN  P  D NQSPRNMYQCQM KQTMGT   N++ +   K 
Sbjct: 709 NTLCNSYKETESTDFLSIVANFTPFSDFNQSPRNMYQCQMAKQTMGTSHHNYKSRSENKS 768

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           YRL  P SP      Y    MDN+PMG NAIVAV+SYT YDMEDAM++NKSS ERGF HG
Sbjct: 769 YRLIGPQSPLISTKIYKYYKMDNYPMGINAIVAVLSYTAYDMEDAMVINKSSIERGFFHG 828

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
            ++K+  ++L++                   + + F  + +       + DK    D F 
Sbjct: 829 TVYKTERVDLQN-------------------KKERFIDMPN-------IGDKLSLNDKF- 861

Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES-ENRYVTCRYSGKEEMCVEVVRM 874
                                         Y+Y KE+ E + +T  Y G E   V+ VR+
Sbjct: 862 ------------------------------YTYLKENGETKIIT--YQGSESGIVDTVRV 889

Query: 875 -SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
            +S   EG S++     +  RIQRNP +GDKF SR GQKG+CS+ WP  D+PFT+ G+VP
Sbjct: 890 FNSKDNEGLSMS-----VTLRIQRNPNIGDKFCSRHGQKGVCSMHWPLVDMPFTEDGIVP 944

Query: 934 DIVFNPHGFPSRMTIGFL 951
           DI+ NPH FPSRMTIG L
Sbjct: 945 DIIINPHAFPSRMTIGML 962



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 62  NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF-EIYGKTLKLNIVKAAISEPKVPAG 120
           NE    +  PHI SFD  ++  L   V+ +   E+ +  G  L +   K  +  P  P  
Sbjct: 2   NEPFDFITEPHIGSFDEFVNL-LPNIVKKMPKFEYRDTKGNKLSVEYEKIQLYMPLKPDS 60

Query: 121 PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR 180
            + I   +  P E R     Y G  +  +  + +       ++  G +P+M+KSK+CHL 
Sbjct: 61  DLAID-RRLKPRECRIRGISYKGKLSGRLKCTINDNQAFEISRSFGNLPVMVKSKKCHLH 119

Query: 181 NLTPAQLI-ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL 239
             + A++  E GE P E GGYFI  G+EK VRLL+  +RN+   I R +   +G  F++ 
Sbjct: 120 GKSGAEIAKEFGEDPREIGGYFIYNGNEKCVRLLVAPKRNYLFGIIRESNAKKGTNFTEY 179

Query: 240 GVYIRSVKRDESATNNVLHFVTNGS 264
            V  R V  DE+ T    H++ +G+
Sbjct: 180 AVTARCVGEDETGTMMAFHYLIDGN 204



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++ GYNY+G ETMYSGV G   +A IF GVV+YQRLRHMV+DK+Q +
Sbjct: 1046 IKYGYNYHGNETMYSGVTGDEFKADIFIGVVYYQRLRHMVNDKFQVR 1092


>gi|387593249|gb|EIJ88273.1| RNA polymerase I [Nematocida parisii ERTm3]
 gi|387596039|gb|EIJ93661.1| RNA polymerase I [Nematocida parisii ERTm1]
          Length = 1143

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 286/1006 (28%), Positives = 440/1006 (43%), Gaps = 206/1006 (20%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEF-EIYGKTLKLNIVKAAISEPKVPAGP-VGIH 125
           L  PHI S++  +   L        P+   +    ++ + +    I +P +       + 
Sbjct: 8   LAQPHIDSYNRFISTTLPKLTHAFEPVSATDKSNNSITVLLESIRIEKPSIKETTGRKVQ 67

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLT 183
                P E RQT   Y       V  S +G A    T+EV  G +P+M++S  C+L +++
Sbjct: 68  KRSILPYECRQTVQTYQSEVLTDVCISINGIAK---TQEVSLGFIPVMVRSDLCYLSSMS 124

Query: 184 PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYI 243
             +L++  E P E GGYFI  G EK+ RLL   ++  P  I R +   +    S+  V  
Sbjct: 125 DTELVQAKEDPAEMGGYFIYKGSEKICRLLQIQKKYVPFGIYRPSMSKKNKNMSEHAVSY 184

Query: 244 RSVKRDESATNNVLHFVTNGSARFMFSHRKS-------MCLLGM---------------- 280
           +S  +   +T   LH+ T+ S +      K        + L G+                
Sbjct: 185 KSTNQFGQSTLFSLHYFTDHSIKVRVRLLKREYYIPLHLVLRGLSGKTDQEVNDSFRAVL 244

Query: 281 ------------MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-------------- 314
                       +QS    G +TQ +  V+ G  F+  L Y + H               
Sbjct: 245 KDADLMEYVDLLLQSFSLHGEYTQRECLVYLGNKFR--LYYQMSHTEMTMQEARLKKSAK 302

Query: 315 -------------NEVEICDY---------------MLTNCILPHLDDYWDKFLCLSHMT 346
                        +EVE CD                 + + I  H   + DK+  L    
Sbjct: 303 NWEYTTTAQGKSPSEVE-CDISKYQDCLTDEEVGVRFINDTIGSHTKSFNDKYNLLILCV 361

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG----------------TSA 390
            KLF  V G V  D+ D++   E +T G    +++  +  G                + +
Sbjct: 362 SKLFQQVSGRVPSDNGDALSFHETITIGDTLTEIVTDKVQGIRRSFRNELISCIHYLSIS 421

Query: 391 VLKESDIYAAFRA--SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
           V   +D+    +   +    ++   LA G +S    S   +MQ +GF I+AE +N MR+ 
Sbjct: 422 VNNPTDLNRILKRCFTPFTPSVNRLLACGVLSFTNLSAYAMMQQAGFTIVAERLNYMRFF 481

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
           SH R+VHRGS+F+ MR+S  R+L  ++WGF+CPVHTPDG+PCGLL HL+  C +S     
Sbjct: 482 SHLRSVHRGSFFEAMRTSTVRKLLPESWGFLCPVHTPDGSPCGLLTHLSHACVVSH---- 537

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
           +  A     L+S GM+ L   +  +P     V+ +GR+ G +      S +  LR  K+ 
Sbjct: 538 ETYALPVHELISYGMVHLMSTLTGVP-----VLQNGRVTGTVSPDRVGSFIDSLRRRKLR 592

Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI 628
           G+K  K  EI+Y             L +   P R +RP++N+  G IE+IG+ EQ+++ +
Sbjct: 593 GDKF-KYAEIIYNGDT---------LSIINTPNRFVRPLVNIKEGCIEYIGSSEQMYVQV 642

Query: 629 -------------------CITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
                              C +         THRE+S T  LS ++   P+ + N SPRN
Sbjct: 643 EGLAQCTAGVSDKITRMYACNSNPAMVYSAPTHREVSPTHMLSVVSGSTPLGNFNPSPRN 702

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
           MYQCQM KQ+MGT     +Y+   K+Y L    +P      Y    +  +P G N  +A+
Sbjct: 703 MYQCQMAKQSMGTTPHTQKYRTDQKVYSLDYVQTPTLHTNLYAEYGLGEYPNGKNITIAI 762

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
           +SYTGYD+EDA+ILNK+S  RGF  GC+                                
Sbjct: 763 LSYTGYDVEDAVILNKASVNRGFMRGCVL------------------------------- 791

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP----DGLVYVGAKLNERDPM 845
                            K +T ++      N + E +LG     +GL  VG  + +R  +
Sbjct: 792 -----------------KTETVNF------NDSPEFELGTLSCGEGLPEVGQLIPDRGVI 828

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
           Y+            + S  E M V+ + +  G   GG  + N   I  RI R PT+GDKF
Sbjct: 829 YTTVNTKVLEEKVHKNSASESMRVKHISVYQG--AGGKRSAN---ITLRIPRIPTIGDKF 883

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +SR GQKG+CS+ +  ED+PF++SG+ PD++ NPH FPSRM+IG  
Sbjct: 884 SSRHGQKGVCSILYEDEDIPFSESGVTPDLIINPHAFPSRMSIGMF 929



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 765  LES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            LES G+   G ET+YSGV G  +   +FFG+V+YQRLRHMVSDK+Q +     DP  K
Sbjct: 984  LESAGFKRGGGETLYSGVTGKPLSVDVFFGIVYYQRLRHMVSDKYQVRTIGPIDPVTK 1041


>gi|160331424|ref|XP_001712419.1| rpa2 [Hemiselmis andersenii]
 gi|159765867|gb|ABW98094.1| rpa2 [Hemiselmis andersenii]
          Length = 1129

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 307/991 (30%), Positives = 465/991 (46%), Gaps = 179/991 (18%)

Query: 65  LLTLGAPHIASFDFMLDEGL--------DLAVEDIAPI----EFEIYGKTLKLNIVKAAI 112
           L +L   HI SF+F + +G         ++ ++D   I      EI+G  + L++    +
Sbjct: 11  LQSLTRIHIDSFNFAISQGFFFLKFFSNNILIQDKLKILRHFTLEIFG--IHLSLPNFFL 68

Query: 113 SEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIML 172
              K+          K  P + R+ +  YSG F + ++  +      +F  ++G +PIM+
Sbjct: 69  KNKKI----------KKIPRQCRELKINYSGDFLLGISSVFGKHGKFSFIYKIGNIPIMV 118

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
           KS +C+L      QLIE  E   E GGYFI+ G EK++RLLI  ++N    + R    +R
Sbjct: 119 KSLKCNLYQQKKKQLIEMDEEEIEMGGYFIINGMEKMIRLLIVPKKNISFTLSRLTNTSR 178

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGS--ARFM---------------------- 268
           G L + L    RSV R +++    LH++TNGS  AR +                      
Sbjct: 179 GNLCTTLSCSFRSVDRLQTSRTLHLHYLTNGSIHARIIVQKKEFFIPVIMLIKSLMPISD 238

Query: 269 ----------FSHRK--SMCLLGMMQSLHEE-GIHTQHDSKVFFGQIFKEKLQYDLRHLN 315
                     FS  K   + ++ M++  HE   + TQ     F G++FK  LQ +   ++
Sbjct: 239 KKIFESLTKTFSKDKFYRIRIMAMIKDAHETCDLKTQISVLEFLGKVFKTSLQTNT--ID 296

Query: 316 EVEICDYMLTNCILPHL-DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
              I +  L N IL HL +D   K   L  M  KL  V + +   D+ DS+  QE +  G
Sbjct: 297 AKSIGEKFLFNHILIHLGEDKEAKVKLLLFMINKLLSVQKKISIEDNPDSLSSQEFLLPG 356

Query: 375 SLYLQLLKKE-KSGTSAVLK----ESDIYAAFRA---SSIESAMTNFLATGNVSAGKNST 426
            L +   K++ +S  + +      E +I   F     S  +   T+FL+   ++ GK   
Sbjct: 357 HLIMVYFKEKFESSLNFIFSQKEFEQNISNNFNKEGKSFQKQFCTDFLSKAFMTTGKGLA 416

Query: 427 L-------------QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRT 473
                         +L Q SG  +  E IN  R++S+FR++HRG +F E++++  R+L  
Sbjct: 417 QIISTGSYVSKFNHELSQTSGLSVSIERINFGRFLSYFRSIHRGKFFFELKNTSGRKLLP 476

Query: 474 DAWGFICPVHTPDGTPCGLLNHLTTNCQIS-------EYIPSKVLAQIPSVLVSLGMLPL 526
            +WGF+CPVHTPDG  CG+LNH  ++  +S       ++        +P        L  
Sbjct: 477 QSWGFLCPVHTPDGALCGILNHTASSVLVSLSNPLNCDFFKKYFFRYLPK-----NFLKE 531

Query: 527 TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI-VGEKIPKSLEIVYLKRPE 585
             +  SI       M+DG+I+G+I      S V KLR  K+ V  KI    EI  + R  
Sbjct: 532 KKISSSI------FMIDGKILGFIPKFFFKSFVDKLRTEKVSVLGKISLGCEIFSISRFN 585

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLA---------------------AGNIEWIGTFEQV 624
           +    +P   L +  GR LRPV   +                        IE IGT EQ 
Sbjct: 586 RKCS-FPSCILLSQDGRPLRPVKWFSFKKKKKFSVFKKKNEKDFLNYCSEIEIIGTLEQC 644

Query: 625 FMDI-CITMKEAY---PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
           F++I  +  + ++     + TH E+  ++ LS +A   P  D NQSPRNMYQCQM KQ++
Sbjct: 645 FLNIDNLDYQSSFFTKNMVGTHSEIEASNILSVIAGATPFSDLNQSPRNMYQCQMSKQSV 704

Query: 681 GTPCLN-WRYQGVGKLYRLQTPASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
           GTP    WR   + K + L  P  P  R  +  D L MD FP G N++V+VI+YTG+DME
Sbjct: 705 GTPFYTFWRRDDI-KSFFLLNPQVPICRNKIIQDGLQMDAFPNGFNSVVSVITYTGFDME 763

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DAMI+NKSS ERGFA   +           YN +  +     +  S+++   FF     +
Sbjct: 764 DAMIINKSSIERGFASSNV-----------YNCFDLD-----IKPSLLKKSNFFKKKKTE 807

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
                                    E+ L    L+  GA L  ++  YS  K++E  +  
Sbjct: 808 -------------------------ENVLKTGDLLKKGAPLVPKESWYSIHKKNEAFFC- 841

Query: 859 CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
             Y+  E+  ++ +++ S      ++  N   I  R +R P VGDKFASR GQKG+ S  
Sbjct: 842 --YNSSEKAIIDQIKIFSDIENNQNIEKNS--IKIRSRRRPLVGDKFASRHGQKGVFSYL 897

Query: 919 WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           + + DLPFTD G+ P+I+FNPHGFPSRMTIG
Sbjct: 898 YSSIDLPFTDLGMNPEIIFNPHGFPSRMTIG 928



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
            +SG+ +YG E  YSG  G      +F G+V+YQRLRHMV DK+Q  +
Sbjct: 969  KSGFQFYGNEIFYSGYSGEPFSIDVFLGIVNYQRLRHMVLDKYQISN 1015


>gi|15208247|dbj|BAB63148.1| hypothetical protein [Macaca fascicularis]
          Length = 441

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/407 (49%), Positives = 254/407 (62%), Gaps = 40/407 (9%)

Query: 546 IVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
           +VG++  ++A  +   LR  K++ EK IP  +E+V +    K   LYPGL+LFT P R++
Sbjct: 1   MVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLV 59

Query: 605 RPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
           RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL     LS +AN IP  D N
Sbjct: 60  RPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHN 119

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTN
Sbjct: 120 QSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTN 179

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           AIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E +  G D S
Sbjct: 180 AIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIKQG-DSS 230

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
           ++                           FG  P +  +  KL  DGL ++GAKL   DP
Sbjct: 231 LV---------------------------FGIKPGDPRILQKLDDDGLPFIGAKLQYGDP 263

Query: 845 MYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
            YSY   +        Y  KE   V+ +++ S  T  G     C  I  R+ RNPT+GDK
Sbjct: 264 YYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDK 321

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           FASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 322 FASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 368



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRL 800
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQR 
Sbjct: 408 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRF 441


>gi|209881586|ref|XP_002142231.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
 gi|209557837|gb|EEA07882.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1341

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 256/758 (33%), Positives = 369/758 (48%), Gaps = 165/758 (21%)

Query: 322  YMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL 381
            +++ N IL HL ++  K  CL  M  KL  +  G ++ +S DS   QEI++ G+LY  +L
Sbjct: 379  FIIDNHILVHLPEWNAKLECLILMFIKLLKLQYGQIREESIDSFAYQEILSSGNLYASVL 438

Query: 382  K---------------------------KEKSG------TSAVLKESDIYAAFRASSIES 408
            K                           KE S       +SA L      + F+ S I +
Sbjct: 439  KDAIFSFLQKIRMIYITEIRNRNSSKSEKEASDELPLPYSSAALDLLRDDSFFKTSLIRN 498

Query: 409  A------MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
                   +  F+ATGN+   K + L L Q SG+ ++A+ +N  R++SHFRAVHRG +F  
Sbjct: 499  ISMIPKRIQYFMATGNI---KTTQLDLQQLSGWTVVADRLNFNRFLSHFRAVHRGQFFTT 555

Query: 463  MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC-QISEYIPSKVLAQIPSVLV-- 519
            M++++ R+L  + WGF+CPVHTPDG PCGLL HL+ +   ++++     L  +   LV  
Sbjct: 556  MKTTDVRKLMGETWGFLCPVHTPDGEPCGLLLHLSQDTIPVTQFEIQSTLKNLRDYLVGQ 615

Query: 520  -------------SLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
                           G L L  +      +++ VMLDGR++ +I     T    KLR LK
Sbjct: 616  NIPCDDGLGTLSIQWGSLNLDDIYVPDLSKSVPVMLDGRVMFHIPKLKFTFWQEKLRNLK 675

Query: 567  IVGEKIPKSLEI-VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
                K P  L +   +       G++ G+++FT PGR++RPV++L +  I+WIG   Q +
Sbjct: 676  --WSKTPSILPVHTEIACIPPDCGVFSGIFMFTAPGRLVRPVLHLKSNKIDWIGPLAQPW 733

Query: 626  MDICITMKEAY------------------------------------------------- 636
            MDI +T +E                                                   
Sbjct: 734  MDIGVTEEETQKSIKLYNLQMKLFGLYRNDNITSDIETTDNMDKNQIEEMIKKDYTLGCN 793

Query: 637  PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
            P + TH+EL  +  LS  A+LIP    NQSPRNMYQCQM KQTMGTPC ++ Y+   ++Y
Sbjct: 794  PVMYTHQELHPSTILSITASLIPYAHHNQSPRNMYQCQMLKQTMGTPCYSYPYRTDNRMY 853

Query: 697  RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
            R+ TP +P      Y +     +P GTNAIVAVIS++GYDMEDAM+LNK+SYERG  H C
Sbjct: 854  RIITPQNPLVITKGYASYGFSEYPTGTNAIVAVISHSGYDMEDAMVLNKASYERGIFHAC 913

Query: 757  IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
            ++K              T+ +++  +  + ++                    ++  +   
Sbjct: 914  VYK--------------TKILFAAPNSVIKKSDA------------------ESYRFHNI 941

Query: 817  DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE----NRYVTCRYSGKEEMCVEVV 872
             P  K +  +LG DGL  +G KL +  PM    K       +  +   Y   EE  VE +
Sbjct: 942  GPDGKLVIKELGADGLPMIGQKLVKGSPMCRVEKLGSGGVISNAIVQTYHDDEEAYVEKI 1001

Query: 873  -RMSSGF-TEGGSVTP-----------------NCAYIGYRIQRNPTVGDKFASRAGQKG 913
             R+ SG  TE  S +                      +  RI RNP VGDKFASR GQKG
Sbjct: 1002 NRVGSGLSTESHSDSTLGGSGGPGGSEYSSGYGEKISLKLRIVRNPMVGDKFASRHGQKG 1061

Query: 914  ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            I S+ WP E++PF +SG+VPDI+FNPHGFPSRMT+G L
Sbjct: 1062 ILSMLWPHENMPFGESGIVPDILFNPHGFPSRMTVGML 1099



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 19/257 (7%)

Query: 63  EFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE--------------IYGKTLKLNIV 108
           E LL    PHI SF+  L  GL   V ++  I  +              I  + L++ + 
Sbjct: 45  ERLLEAVWPHIESFNCFLLTGLSNIVINLPSIYIDSDYVIDDCELNVGYIPREYLRIKVT 104

Query: 109 KAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTV-AWSWDGKAGGTFTKEVGR 167
              + +P    G       K YP  AR     YS P  +    ++   K+        G 
Sbjct: 105 CIKVGKPIF--GSTESSNTKMYPCSARNGHLSYSAPLWIEFECYNSSSKSSVRHNLFAGS 162

Query: 168 VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           +PIM++S  CHL +L+P +L+  GE P+E GGYFI+ G+E+++R +I  R N+P+ +KR+
Sbjct: 163 IPIMVRSLACHLYSLSPNELVANGEDPNEVGGYFIINGNERVIRYVIQQRCNYPVGLKRS 222

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE 287
            + +R +  ++  + +RS++ D ++T N L+  T+    +     +   LL     L   
Sbjct: 223 RFTSRDIFGTEYAILLRSLRNDGTSTANYLYGTTDNQCVYRILLNRQEWLLPFWNVLLAV 282

Query: 288 GIHTQHDSKVFFGQIFK 304
           G  + +D+K    +I +
Sbjct: 283 G--SIYDAKTLRNKILQ 297



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L++G+ Y+G E +++G+ G+ M   IF GV++YQRLRHMV+DK Q +     D   +   
Sbjct: 1155 LKTGFQYFGCEPLFNGMTGTEMPCHIFMGVIYYQRLRHMVADKAQVRSTGPIDALTRQPV 1214

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMC 868
                  G +  G    ERD + SY   S   +R + C    K  +C
Sbjct: 1215 KGRKRHGGIRFGEM--ERDSLISYGVSSIIADRLLKCSDEHKAYVC 1258


>gi|162605772|ref|XP_001713401.1| DNA-directed RNA polymerase I 135K chain [Guillardia theta]
 gi|13794333|gb|AAK39710.1|AF083031_67 DNA-directed RNA polymerase I 135K chain [Guillardia theta]
          Length = 1109

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 295/976 (30%), Positives = 461/976 (47%), Gaps = 164/976 (16%)

Query: 65  LLTLGAPHIASFDFMLDEGLD-LAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVG 123
           L +L   H+ S++ ++ +G   L  +      F+ Y     L  +   +S P    G + 
Sbjct: 9   LQSLLKIHLNSYNQIISQGFYFLRQKYFITKNFKEYNSFKGLTSIDFYLSNPIYQFGTL- 67

Query: 124 IHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLT 183
           IH  K  P ++++ +  Y G F +++    + K      KE G  PIM+KS +C+L  L 
Sbjct: 68  IH--KILPRQSKELKITYQGEFIISINIQNNEKNFNLVYKE-GDFPIMIKSLKCNLFGLK 124

Query: 184 PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYI 243
           P QL E  E   E GGYFI  G EKL+RL+I  RRN+     + +   RG  FS     I
Sbjct: 125 PHQLTEIDEEEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKNFSSFACSI 184

Query: 244 RSVKRDESATNNVLHFVTNGS--ARFMFSHRK----SMCLLGMMQSLHEEGI-----HTQ 292
           R V R   +    LH++TNGS   RF+  +++     + +L  ++ + +  I     +  
Sbjct: 185 RCVNRYGLSRTFHLHYLTNGSILCRFIIRNQEFFFPVVIILKAIKDVSDTEIFKDITNNL 244

Query: 293 HDSKVF-----------------------------FGQIFKEKLQYDLRHLNEVEICDYM 323
           HD+ +F                               +IF++K+     HLN +E    +
Sbjct: 245 HDNNMFKEVAIKLISDSYNYIKSNFRDNYLEYIGKLFKIFEKKI-----HLNNLETGKNL 299

Query: 324 LTNCILPHLD-DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
           + N +  H++ D   K+L L +M  KL     G+   ++ DSI  QEI+  G+L   +L+
Sbjct: 300 IENNLFIHVENDMNQKYLLLIYMIQKLIKSRMGLNLGENPDSIEFQEILLSGNLIGSILE 359

Query: 383 KEKSGTSAVLKESDIY----AAFRASS-IESAMTNF-------LATGNVSAGKNSTLQLM 430
           K+ S    ++K  +      +  R +  I    +NF       +++GNV    N   ++ 
Sbjct: 360 KKLSANFDLIKIDEFMNIENSPIRKTKLIMKVFSNFSVGIRYLISSGNVPLIVN--FEIP 417

Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
           Q SGF I  E  N  R++S FR++HRG YF  ++++  R+L    WG++CP+HTPDG+ C
Sbjct: 418 QTSGFNISIERNNYSRFLSFFRSIHRGKYFTTLKTTSGRKLMPSNWGYLCPIHTPDGSLC 477

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQ---------SIPEQALMVM 541
           G+LNHLT             ++ I SV+  +  +      +         S   +  +++
Sbjct: 478 GILNHLT-------------ISSITSVVNPIERINFLKYFKKHKTIFDRLSFKNRTSIIL 524

Query: 542 LDGRIVGYILDQIATSLVPKLRMLKIVGEKI-PKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           LDG+I+G+  +        K+R  K+    I   S+EIV LK  E  + L+  L +++  
Sbjct: 525 LDGKIIGFSTEIFLKWFTDKIRCEKVSDFGIFSNSIEIVCLKN-ENILNLFE-LKIYSSE 582

Query: 601 GRMLRPVM------NLAAGN-------------IEWIGTFEQVFMDI---CITMKEAYPG 638
            R+LRPV       N    N             IE IG+ EQ +++I     T K     
Sbjct: 583 ARLLRPVRWNSFNSNFNKTNSKNESSFTYNFHTIELIGSLEQSYLNIHQSIFTKKGEICL 642

Query: 639 ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN-WRYQGVGKLYR 697
           + TH E+   +  S +    P  D NQSPRNMYQCQM KQ++G P  N WR     K+Y 
Sbjct: 643 LYTHYEIDNLNIFSIVPGCTPFFDMNQSPRNMYQCQMAKQSIGIPFHNIWRKMD-SKIYF 701

Query: 698 LQTPASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
           L +   P  R  ++ D L +DNF  G NA+V V+SY+ +DMEDA++ NKSS ERG     
Sbjct: 702 LFSVQIPICRNKINQDGLGLDNFINGFNAVVGVLSYSSFDMEDAVVFNKSSIERGLGMSY 761

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           I+ +         N+    +M   ++ +       +  +HY  L                
Sbjct: 762 IYNTS--------NFDVNLSMIKNLNKN-------YSTLHYNCL---------------- 790

Query: 817 DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYV---TCRYSGKEEMCVEVVR 873
                        DG+  VG  L ++D +    K   N+ V   T  Y+  E   V+ V+
Sbjct: 791 -------------DGICNVGNALKKKDIILLNNKLVNNKLVRETTINYNNDEIASVDCVK 837

Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
           +   +++  S   +   I  + +R P  GDKFASR GQKGI S K+  E+LPF+++G++P
Sbjct: 838 ILKNYSKIQS--KHNVMIRLKSKRKPIEGDKFASRHGQKGILSFKYEVENLPFSETGIIP 895

Query: 934 DIVFNPHGFPSRMTIG 949
           DI+FNPHGFPSRMTIG
Sbjct: 896 DILFNPHGFPSRMTIG 911



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 35/52 (67%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            E+G+ +YG E  YSG  G  +Q  +F GV+HYQRL+HM+ DK+Q  +   R+
Sbjct: 952  ENGFEFYGKEMFYSGFVGLPLQTDVFVGVIHYQRLKHMILDKFQVSNNSARN 1003


>gi|49522875|gb|AAH73857.1| POLR1B protein, partial [Homo sapiens]
          Length = 560

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/391 (51%), Positives = 246/391 (62%), Gaps = 40/391 (10%)

Query: 562 LRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGT 620
           LR  K++ EK IP  +E+V +    K   LYPGL+LFT P R++RPV NLA G  E IGT
Sbjct: 3   LRHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGT 61

Query: 621 FEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
            EQ+FM++ I   E + G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTM
Sbjct: 62  MEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTM 121

Query: 681 GTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDA 740
           G P L ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDA
Sbjct: 122 GFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDA 181

Query: 741 MILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRL 800
           MI+NK+S+ERGFAHG ++KS FI+L        +E +  G D S++              
Sbjct: 182 MIVNKASWERGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV-------------- 218

Query: 801 RHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
                        FG  P +  +  KL  DGL ++GAKL   DP YSY   +        
Sbjct: 219 -------------FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY 265

Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
           Y  KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WP
Sbjct: 266 YKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWP 323

Query: 921 AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           AED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 324 AEDMPFTESGMVPDILFNPHGFPSRMTIGML 354



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 394 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 444


>gi|312370727|gb|EFR19060.1| hypothetical protein AND_23137 [Anopheles darlingi]
          Length = 501

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/348 (54%), Positives = 221/348 (63%), Gaps = 60/348 (17%)

Query: 604 LRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
           +RPV NL A   E IGTFEQV++DICIT +E YP +TTH ELSKT FLSNLA LIPMPDC
Sbjct: 1   MRPVKNLLANRTELIGTFEQVYLDICITPEETYPELTTHMELSKTAFLSNLAQLIPMPDC 60

Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
           NQSPRNMYQCQMGKQTMGTPC NW  Q   K YRLQTPA+P FRPVHYD +D+DN+ MGT
Sbjct: 61  NQSPRNMYQCQMGKQTMGTPCHNWAMQCTSKFYRLQTPATPLFRPVHYDNIDLDNYAMGT 120

Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
           NAIVAVISYTGYDMEDAMI+NKS+YERGFA G ++K+ F  L                  
Sbjct: 121 NAIVAVISYTGYDMEDAMIINKSAYERGFAAGTVYKNEFFALLG---------------- 164

Query: 784 SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD 843
                                        +F R+P ++ L   L  DGL   G+ L+  D
Sbjct: 165 ---------------------------NSFFARNPKDETLTAFLDNDGLPCQGSVLSTND 197

Query: 844 PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
           P+YSY+  +++ Y              V       +E G        I YR+ RNP+VGD
Sbjct: 198 PLYSYFDTNDHLY-------------HVQVQDKQLSENGKQ----LIITYRVPRNPSVGD 240

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KFASRAGQKGICS KWPA DLPFT+SG++PDI+FNPHGFPSRMTI  +
Sbjct: 241 KFASRAGQKGICSQKWPAIDLPFTESGMIPDIIFNPHGFPSRMTIAMM 288



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 40/45 (88%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           SGYNYYGTE MYSGVDG  M+A IFFG+VHYQRLRHMVSDKWQ +
Sbjct: 328 SGYNYYGTERMYSGVDGREMKADIFFGIVHYQRLRHMVSDKWQVR 372


>gi|83405170|gb|AAI10834.1| POLR1B protein [Homo sapiens]
          Length = 952

 Score =  369 bits (946), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/382 (51%), Positives = 241/382 (63%), Gaps = 39/382 (10%)

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
           ++IP  +E+V +    K   LYPGL+LFT P R++RPV NLA G  E IGT EQ+FM++ 
Sbjct: 404 KRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVA 462

Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
           I   E + G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ 
Sbjct: 463 IFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQD 522

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+E
Sbjct: 523 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWE 582

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           RGFAHG ++KS FI+L        +E +  G D S++                       
Sbjct: 583 RGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV----------------------- 610

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
               FG  P +  +  KL  DGL ++GAKL   DP YSY   +        Y  KE   V
Sbjct: 611 ----FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVV 666

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+S
Sbjct: 667 DNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTES 724

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G+VPDI+FNPHGFPSRMTIG L
Sbjct: 725 GMVPDILFNPHGFPSRMTIGML 746



 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 197/381 (51%), Gaps = 38/381 (9%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGGCMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK 382
            DS++ QE++T G L+L  LK
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLK 386



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 786 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 836


>gi|429962259|gb|ELA41803.1| hypothetical protein VICG_01155 [Vittaforma corneae ATCC 50505]
          Length = 1066

 Score =  369 bits (946), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 295/970 (30%), Positives = 429/970 (44%), Gaps = 188/970 (19%)

Query: 69  GAPHIASFDFMLDEGLDL-AVEDIAPIEFEIYGKTLKLNIVKAAISEP-KVPAGPVGIHF 126
           G  HI  F+ + D+ + L  V +  P  FEI G  L+L+     I +P ++  G      
Sbjct: 7   GDMHINQFNALFDKEILLNTVVNTPP--FEISG--LRLSFDGLEIHKPFRIQKGKNSKDT 62

Query: 127 N----KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
                +  P + R+    Y G   + +   + G       K+ G  P+ML+S  C+L   
Sbjct: 63  RTVDRRLLPKDCREQNLTYGGSVFLKIKLEYRGNVIFNEYKDAGVFPVMLRSCMCNLNG- 121

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
               L E GE P E GGYFI+ G++++VR  +  +RN   A ++   K++   ++D  V 
Sbjct: 122 -SQNLYELGEDPKEPGGYFIIDGYDRMVRFHVAQKRNFIFAHQK---KSKDSTYTDYSVS 177

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL------------------------- 277
           IRSV  ++    N + +  +G+  F     K + L                         
Sbjct: 178 IRSVSEEQIGQKNEIKYCADGNMHFKIYVNKRVYLIPVTLLLRALANCTDEEIFVALGSD 237

Query: 278 ---LGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDD 334
              L M+  + +   ++Q +   + G  FK  L+ +    N  E   + +   +LPHL  
Sbjct: 238 QRILAMLARMKDYPCYSQKECLDYLGARFKPILKIE----NYEECGRHFIDRVVLPHLSK 293

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY-------LQLLKK---- 383
           + DK+L +     KLF    G +Q D  D     E+ T   L        L  +K+    
Sbjct: 294 FEDKYLLIIEAIKKLFRCYDGKIQPDDVDVPSNFELYTELQLIPICFREKLNEIKRSFMT 353

Query: 384 -------------------------EKSGTSAVLKESDIYAAFRASSIESA--MTNFLAT 416
                                    E +G  + L+   I   F +   +    M  FL+T
Sbjct: 354 KIMYFLRNRVSTTDSTTSFNVSEAAELTGELSDLQLEKIKKHFESLDFDIGLKMKRFLST 413

Query: 417 GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
           GN++    S   L+Q S F ++AE IN  R+ SHF +V RG++F  ++ +  R+LR ++W
Sbjct: 414 GNITTVCCS--DLLQNSSFTVLAERINIWRFTSHFASVSRGTFFSNLKITSIRKLRPESW 471

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML-PLTPVIQSIPE 535
           GF CP++TPDG PCGLL HL+ +C +S+   S V   +  +L   G++ P       +P 
Sbjct: 472 GFFCPINTPDGAPCGLLFHLSQSCFVSD--KSYVFDDM--ILYDFGVVAPHRGYNTGVP- 526

Query: 536 QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLY 595
               V  +G++ G   D   + L   LR  +    K     E+ Y    E G G+   + 
Sbjct: 527 ----VFYNGKLSGTTND--PSGLAKSLREYR---AKSGLCFEVCY----EYGKGIDESVC 573

Query: 596 LFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT---MKEAYPGIT-----------T 641
           +F     + R V N+     EWIG  EQVF++I ++    K+AY                
Sbjct: 574 IFDSYSNLYRKVFNVRLKREEWIGLKEQVFLNIKLSKYVTKDAYSKYDREAENEDTFEFE 633

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           +RE+  T+  S++A  IP  D N SPRNMYQCQM KQ MG  C N +++  GK + +   
Sbjct: 634 YREIDNTNIFSSIAACIPFSDHNPSPRNMYQCQMTKQAMGVACFNQQFRTDGKNFFVSYL 693

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            SP  R   Y T   + FP+G N IVAV+SYT YDMEDA+++NKSS ERG     I+K+ 
Sbjct: 694 QSPMVRTGAYSTF--EEFPIGINCIVAVLSYTAYDMEDAVVINKSSTERGLFGAFIYKNE 751

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
             ELE                     A I F      R+        +T D   R     
Sbjct: 752 KFELEK-------------------NAHIDFTPFKGARI--------ETDDVLVR----- 779

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
                       YV   L  R   Y                G E   VE VR+ S     
Sbjct: 780 ------------YVHPDLGTRTIKY---------------HGAESGFVEAVRIFS----- 807

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
               P C  I  RIQRNPT+GDKF SR GQKG+CS+ W   D+PFT+ GL PDI+ NPH 
Sbjct: 808 -RDVP-CVTITLRIQRNPTIGDKFCSRHGQKGVCSMFWQEIDMPFTEYGLRPDIIINPHA 865

Query: 942 FPSRMTIGFL 951
           FPSRMTIG L
Sbjct: 866 FPSRMTIGML 875



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 759 KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           KS+  EL+  G+NYYG E MYSGV G+  +  IF G V+YQRLRHMV+DK+Q +
Sbjct: 908 KSIGEELKKCGFNYYGNEPMYSGVTGTEFRTDIFIGPVYYQRLRHMVNDKYQVR 961


>gi|402891938|ref|XP_003909185.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
           [Papio anubis]
          Length = 952

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/418 (48%), Positives = 250/418 (59%), Gaps = 48/418 (11%)

Query: 534 PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG 593
           P Q  ++ L G +    L    T L  K         +IP  +E+V +    K   LYPG
Sbjct: 377 PGQLFLMFLKGSLPSMALPTGHTVLREK---------RIPPWMEVVLIPMTGKP-SLYPG 426

Query: 594 LYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSN 653
           L+LFT P R++RPV NL  G  E IGT EQ+FM++ I   E + G+TTH+EL     LS 
Sbjct: 427 LFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSV 486

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
           +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ +   KLYRLQTP SP  RP  YD 
Sbjct: 487 IANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDY 546

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
            DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        
Sbjct: 547 YDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-------- 598

Query: 774 TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLV 833
           +E +  G D S++                           FG  P +  +  KL  DGL 
Sbjct: 599 SEKIKQG-DSSLV---------------------------FGIKPGDPRVLQKLDDDGLP 630

Query: 834 YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
           ++GAKL   DP YSY   +        Y  KE   V+ +++ S  T  G     C  I  
Sbjct: 631 FIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITM 688

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 689 RVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 746



 Score =  230 bits (587), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 196/381 (51%), Gaps = 38/381 (9%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S P+LK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPTLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    +  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVS-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L +L P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQCLGYVPIMVKSKLCNLHSLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK 382
            DS++ QE++T G L+L  LK
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLK 386



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 786 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 836


>gi|332257262|ref|XP_003277728.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
           [Nomascus leucogenys]
          Length = 952

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/382 (51%), Positives = 240/382 (62%), Gaps = 39/382 (10%)

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
           ++IP  +E+V +    K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ 
Sbjct: 404 KRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLEMGKEELIGTMEQIFMNVA 462

Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
           I   E + G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ 
Sbjct: 463 IFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQD 522

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+E
Sbjct: 523 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWE 582

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           RGFAHG ++KS FI+L        +E +  G D S++                       
Sbjct: 583 RGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV----------------------- 610

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
               FG  P +  +  KL  DGL ++GAKL   DP YSY   +        Y  KE   V
Sbjct: 611 ----FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVV 666

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+S
Sbjct: 667 DNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTES 724

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G+VPDI+FNPHGFPSRMTIG L
Sbjct: 725 GMVPDILFNPHGFPSRMTIGML 746



 Score =  235 bits (600), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 196/381 (51%), Gaps = 38/381 (9%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKTALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFT 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEVN-IYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLHNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSVHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK 382
            DS++ QE++T G L+L  LK
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLK 386



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN++GTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 786 AGYNFHGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 836


>gi|397465562|ref|XP_003804560.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
           [Pan paniscus]
          Length = 952

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/382 (51%), Positives = 240/382 (62%), Gaps = 39/382 (10%)

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
           ++IP  +E+V +    K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ 
Sbjct: 404 KRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVA 462

Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
           I   E + G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ 
Sbjct: 463 IFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQD 522

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+E
Sbjct: 523 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWE 582

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           RGFAHG ++KS FI+L        +E +  G D S++                       
Sbjct: 583 RGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV----------------------- 610

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
               FG  P +  +  KL  DGL ++GAKL   DP YSY   +        Y  KE   V
Sbjct: 611 ----FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVV 666

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+S
Sbjct: 667 DNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTES 724

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G+VPDI+FNPHGFPSRMTIG L
Sbjct: 725 GMVPDILFNPHGFPSRMTIGML 746



 Score =  236 bits (602), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 197/381 (51%), Gaps = 38/381 (9%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK 382
            DS++ QE++T G L+L  LK
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLK 386



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 786 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 836


>gi|114579606|ref|XP_001144853.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
           [Pan troglodytes]
          Length = 952

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/382 (51%), Positives = 240/382 (62%), Gaps = 39/382 (10%)

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
           ++IP  +E+V +    K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ 
Sbjct: 404 KRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVA 462

Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
           I   E + G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ 
Sbjct: 463 IFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQD 522

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+E
Sbjct: 523 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWE 582

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           RGFAHG ++KS FI+L        +E +  G D S++                       
Sbjct: 583 RGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV----------------------- 610

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
               FG  P +  +  KL  DGL ++GAKL   DP YSY   +        Y  KE   V
Sbjct: 611 ----FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVV 666

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+S
Sbjct: 667 DNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTES 724

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G+VPDI+FNPHGFPSRMTIG L
Sbjct: 725 GMVPDILFNPHGFPSRMTIGML 746



 Score =  236 bits (602), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 197/381 (51%), Gaps = 38/381 (9%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK 382
            DS++ QE++T G L+L  LK
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLK 386



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 786 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 836


>gi|426336849|ref|XP_004031667.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
           [Gorilla gorilla gorilla]
          Length = 952

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 195/382 (51%), Positives = 240/382 (62%), Gaps = 39/382 (10%)

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
           ++IP  +E+V +    K   LYPGL+LFT P R++RPV NL  G  E IGT EQ+FM++ 
Sbjct: 404 KRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVA 462

Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
           I   E + G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L ++ 
Sbjct: 463 IFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQD 522

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+E
Sbjct: 523 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWE 582

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           RGFAHG ++KS FI+L        +E +  G D S++                       
Sbjct: 583 RGFAHGSVYKSEFIDL--------SEKIKQG-DTSLV----------------------- 610

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
               FG  P +  +  KL  DGL ++GAKL   DP YSY   +        Y  KE   V
Sbjct: 611 ----FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVV 666

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+PFT+S
Sbjct: 667 DNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTES 724

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G+VPDI+FNPHGFPSRMTIG L
Sbjct: 725 GMVPDILFNPHGFPSRMTIGML 746



 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 197/381 (51%), Gaps = 38/381 (9%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++   CI  HL    +KF  L  MT KLF + +G    D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLK 382
            DS++ QE++T G L+L  LK
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLK 386



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 786 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 836


>gi|449299920|gb|EMC95933.1| hypothetical protein BAUCODRAFT_34698 [Baudoinia compniacensis UAMH
           10762]
          Length = 1702

 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 238/710 (33%), Positives = 364/710 (51%), Gaps = 98/710 (13%)

Query: 52  KNFGKPPDKQNEF--LLTLGAPHIASFD--FMLDEGLDLAVEDIAPIEF----------- 96
           K F +PPDK+  +  L     PH+ SF+  F  D  L  A+ DI    F           
Sbjct: 27  KLFREPPDKKTAYPSLAQAIKPHVESFNTIFAPDGQLQHALRDIGTKTFLDVEPGAGLDD 86

Query: 97  -EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDG 155
                  L+L + +  +    V A    +      P E R+    Y G F     +  + 
Sbjct: 87  NARPRNRLQLRVKEVFLERSVVSANNKQLGKRDILPVECRERHVTYRGRFRGRFEYRVND 146

Query: 156 KAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLIN 215
                  +E G++PIML+S RCHL  L+P QL++  E  +E GGYFIV G EKL+R+LI 
Sbjct: 147 GQWKESVREFGQLPIMLRSNRCHLEGLSPKQLVDCREETEELGGYFIVNGIEKLIRMLIV 206

Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS- 274
           NRRN P+AI R +++NRG  ++  G+ IRSV+ D+++  NVLH++++G+  F FS RK+ 
Sbjct: 207 NRRNFPMAIIRPSFENRGPTYTKYGIQIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNE 266

Query: 275 ------MCLLGMMQSLHEE----------------------------------GIHTQHD 294
                 M L  ++++   E                                   ++ +  
Sbjct: 267 YLVPVVMILKALVETTDREIYEGVVGPADTKGLEAKQFVTDRVELLLRTYQAYQLYNRDQ 326

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTC 347
           +K + G  F+  L       +E    ++ L   +LPHL  +        DK   L  M  
Sbjct: 327 TKAYLGSKFRIVLGVPDDMSDESAGAEF-LRKIVLPHLGCFDVTEANNEDKARMLLFMIR 385

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--EKSGTS--AVLKE---SDIYAA 400
           KL+ + +G   +D+ D++  QEI+  G+LY  ++K+  E+  TS  A L++   ++ Y +
Sbjct: 386 KLYALAEGECMVDNPDTVSSQEILLPGALYGMIIKERLEEWLTSIGAQLRDWSRNNQYPS 445

Query: 401 FRASSIE----------------SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
           F +   E                 A+  FL+TGN+ +   + L L Q SG+ ++AE IN 
Sbjct: 446 FTSREFERDFMSKVLRKTNENLGQALDYFLSTGNLVS--PTGLDLQQVSGYTVVAEKINF 503

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
            R++SHFR VHRGS+F E++++  R+L  ++WGF+CPVHTPDG PCGLLNHL+  C+++ 
Sbjct: 504 YRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLSHKCKVA- 562

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
              S  ++ IP ++  LG++  +    S    +++V LDGRI+G+   + A  +   LR 
Sbjct: 563 -TESADVSNIPHLIAQLGVVSSSAASLS---DSVVVQLDGRILGFCTPKQAKVIGDTLRY 618

Query: 565 LKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
            K+ G   +P  LE+ ++  P    G YPG+Y+F+ P RMLRPV  L     +++G FEQ
Sbjct: 619 WKVEGSHGVPLDLEVGFI--PSSNGGQYPGVYMFSSPARMLRPVKYLPLDKTDYVGAFEQ 676

Query: 624 VFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            FM I  T  E   G +TH E   T+ LS +AN  P PD NQSPRNMYQC
Sbjct: 677 PFMSIACTEPEIVSGDSTHVEYDPTNILSIVANQTPFPDFNQSPRNMYQC 726



 Score =  219 bits (558), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/307 (42%), Positives = 169/307 (55%), Gaps = 52/307 (16%)

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
            D  Q P     CQMGKQTMGTP    +Y+   K YRLQT  +P  RP  Y+   +DNFP 
Sbjct: 1199 DAAQKPFFTGNCQMGKQTMGTPGTALKYRTDNKTYRLQTGQTPVVRPPLYNEYGLDNFPN 1258

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIEL-ESGYNYYG----TET 776
            GTNA+VAVI+YTGYDM+DAMILNKS++ERGF HG ++K+  I+L E      G      +
Sbjct: 1259 GTNAVVAVIAYTGYDMDDAMILNKSAHERGFGHGTVYKTKKIDLSEDSKQTRGRGSKVVS 1318

Query: 777  MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
            M+    G +M+AQ                  W+               + L  DG   VG
Sbjct: 1319 MFGFAPGGLMKAQ------------------WK---------------NTLDDDGFAAVG 1345

Query: 837  AKLNERDPMYS----YWKESENRYVT-------CRYSGKEEMCVEVVRMSSGFTEGGSVT 885
             K+ E D + +     W  S N YV         RY   EE  VE +++    +E    T
Sbjct: 1346 MKVKEGDIIAASHSVTWDPSANEYVNRDGITHLHRYKEPEEAFVEEIKIIG--SELSDNT 1403

Query: 886  PNCAY-IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
            P+ A  I +RI R+P +GDKF+SR GQKG+CS KWP+ ++PFT+SG+ PDI+ NPH FPS
Sbjct: 1404 PSQAVSIRFRIPRSPVIGDKFSSRHGQKGVCSQKWPSINMPFTESGIQPDIIINPHAFPS 1463

Query: 945  RMTIGFL 951
            RMTIG  
Sbjct: 1464 RMTIGMF 1470



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYNY+G E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1512 AGYNYHGNEPMYSGITGEELAADIYVGVVYYQRLRHMVNDKFQVR 1556


>gi|399950011|gb|AFP65667.1| DNA-directed RNA polymerase I 135K chain [Chroomonas mesostigmatica
           CCMP1168]
          Length = 1127

 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 285/982 (29%), Positives = 447/982 (45%), Gaps = 162/982 (16%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIA-PIEF-EIYGKTLKLNIVKAAISEPKVPAGPV 122
           L +L   H+ SF+F + +G    +  I   I F +   K +   +    +S P       
Sbjct: 13  LQSLIRIHVDSFNFSISQGFFFIILFIKNSINFLKNKKKNIFFELFGFHVSTPSFYLNKK 72

Query: 123 GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
            I   K  P + R+ +  Y G F + +A  ++ K  G F   +G +PIM++S +C+L   
Sbjct: 73  KI---KKIPRQCRELKVSYGGDFLIGIASLFEKKKKG-FIFRIGEIPIMIRSMKCNLFYQ 128

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
              QL E  E   E GGYFI+ G EK++RLLI  ++N P+   R     RG L + L   
Sbjct: 129 KKKQLTEIDEEEVEVGGYFIIKGQEKMLRLLIVPKKNTPLVCSRINNVQRGDLCTSLSCS 188

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMM-----------QSLHEEGIHT 291
           +RSV R +++    LH++T GS       +K      ++           Q L E  I  
Sbjct: 189 LRSVDRVQTSRTIHLHYLTTGSIHVRIVVKKKEFFFPIIILIKSLNEISDQQLFECLIKN 248

Query: 292 QHDSKV--------------------------FFGQIFKEKLQYDLRHLNEVEICDYMLT 325
               K                           F GQI K     +L   N V+I +  L+
Sbjct: 249 NQGDKYLINRVMIMLKEAHQFCDLKERLKILDFLGQILKIAFPENLS--NNVKISEIFLS 306

Query: 326 NCILPHL-DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE 384
             I  HL ++   K      M  KL    +G+   D+ DSI  QE +  G L L   K++
Sbjct: 307 KYIFVHLGNNRKSKADLFFFMMLKLVFTQKGICLEDNPDSIDSQEFLLPGHLLLMYFKEK 366

Query: 385 --------------------KSGTSAVLKESDIYAAFRAS---SIESAMTNFLATGNVSA 421
                               K  T  ++++  +Y          I   +   ++TG++  
Sbjct: 367 IEISSRYDYSFQYQNIGNLPKGDTLPLIEKKKLYKKLIGKVFGKIHHGIFQTISTGSLMI 426

Query: 422 GKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
             N   +L+Q +G  +  E IN  R++S+FR++HRG +F +++++  R+L   +WGFICP
Sbjct: 427 --NLDQELVQTNGLSVSLERINFGRFLSYFRSLHRGKFFLDLKTTSSRKLWPQSWGFICP 484

Query: 482 VHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM-V 540
           VHTPDG  CG+LNHL+ +   S   P          L+      L  +  S P+++ + +
Sbjct: 485 VHTPDGLLCGILNHLSFSVVFSSCNPIN-----RGTLIRYFNRYLQKLFFSSPKKSTIPL 539

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKI--VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT 598
           ++DG+I+G+       + V + R  K+  +G   P   EI+++ R       +P L L T
Sbjct: 540 IIDGKIIGFAPKFSLKNFVDRFRSEKVSNIGF-FPICFEILFVSRFH-SKSFFPHLILST 597

Query: 599 GPGRMLRPV------MNLA-------------AGNIEWIGTFEQVFMDI-----CITMKE 634
             GR+LRP+        +A             +  IE +G+ EQ F++I      I   E
Sbjct: 598 EDGRLLRPLKWQTKKKKIAFLIRGEYEDFLRNSSEIELLGSLEQNFLNIDNFDYQINFIE 657

Query: 635 AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGK 694
            +    +HRE+  +   S +A   P  + NQSPR++YQCQM KQ++GTP   +  +   K
Sbjct: 658 KFTK-GSHREIEASSIFSTIAGATPFSEMNQSPRDIYQCQMSKQSVGTPFYTFWRRDDSK 716

Query: 695 LYRLQTPASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
            Y L TP  P  R  +  D L +D+FP G N++V+VISYTG+DMED M++NKSS +RGF+
Sbjct: 717 SYFLITPQIPICRNKIIQDGLCLDSFPNGFNSVVSVISYTGFDMEDGMVINKSSIQRGFS 776

Query: 754 HGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
              I  S                    +D S+                        T   
Sbjct: 777 MINISNS--------------------IDLSI------------------------TSKS 792

Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDP------MYSYWKESENRYVTCRYSGKEEM 867
           F ++      ++ L     + +G  + + DP      M +  K+++  +    Y G E+ 
Sbjct: 793 FQKNKTKNKFKEILFNRNFLKIGHTIKKGDPLAPCQIMKNIGKKTKTFFC---YKGIEKT 849

Query: 868 CVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
            VE  +M   F +   +      I  R +R P+ GDKFASR GQKG+ S  + +E+LPF+
Sbjct: 850 IVE--QMKIFFCKTEKIEGERNIIKLRSRRRPSTGDKFASRHGQKGVFSFDYSSENLPFS 907

Query: 928 DSGLVPDIVFNPHGFPSRMTIG 949
           D G++P+I+FNPHG PSRMTIG
Sbjct: 908 DLGIIPEIIFNPHGLPSRMTIG 929



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +SG+ ++G E +YSG  G      +F G+V+YQRLRHMV DK+Q  ++  R+   +
Sbjct: 970  KSGFQFFGNEILYSGYTGEPFVVDVFVGIVNYQRLRHMVLDKFQISNFGPRNSLTR 1025


>gi|307111256|gb|EFN59491.1| hypothetical protein CHLNCDRAFT_138110, partial [Chlorella
           variabilis]
          Length = 743

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 229/745 (30%), Positives = 374/745 (50%), Gaps = 123/745 (16%)

Query: 65  LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE--IYGKTLKLNIVKAAISEP-KVPAGP 121
           L  L  PH+ S+DF L EG+   ++++  IE E  +     +      ++S P +  +G 
Sbjct: 17  LEALAQPHVDSYDFFLGEGMQHVIDNMDGIEIEQPVSKTRHRFWFENPSVSRPIREDSGA 76

Query: 122 VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN 181
                 + +P E R+ R+ Y  PF   + +  +G      +K +G +P+MLKSK C+LRN
Sbjct: 77  AASGDQRLFPRECREARTTYKAPFTCDLVYQVEGMPEQRLSKRLGGLPVMLKSKACYLRN 136

Query: 182 LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
           +T  +L+ R E  +E+GG FI  G E+++R+L  NRR++ +A++R A+  RG  F+++  
Sbjct: 137 MTRRELVARKEESNEFGGTFICNGIERIIRML--NRRHYIMALRRGAYHKRGPSFTEMAT 194

Query: 242 YIRSVKRDESATNNVLHFVTNGSARFMFSHRKS----------MCLLG------------ 279
            IR V++DES+  N  H++ +GS  F  + R++           C L             
Sbjct: 195 LIRCVRQDESSLTNRCHYLADGSCVFALTIRRAEYFIPAGIVLKCFLEVSDRELYGKLVG 254

Query: 280 ------------------MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICD 321
                             +++   + G+HT+     + G++F+  L    R   + ++ +
Sbjct: 255 SVAAGSGHQSFVAERAELLLRQAKQFGLHTRVHCVEYLGRLFRATLDAPDRK-TDYQVGE 313

Query: 322 YMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL 381
            +L + +  HLD   DK      M  KL+ +       D+ D++   E++  G L L++L
Sbjct: 314 QLLRDLLFIHLDQPADKLQLTVQMLLKLYALADRQCGEDNPDALTHHEVLLPGHLLLKVL 373

Query: 382 KKE-----KSGTSAVLKESDIY--------------AAFRASSIESAMTNFLATGNVSAG 422
           +++     ++    V ++ D                 A R   + +     L TGN+ + 
Sbjct: 374 REQLETALEAFRQQVRRDLDTRPEVVNLQDEQYIRKTAERMQDVGAKFEYLLNTGNLVS- 432

Query: 423 KNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPV 482
             S L L Q++G            Y+SHFR++HRG+YF E+R++  R+L  ++WGF+CPV
Sbjct: 433 -RSGLDLSQSTG------------YLSHFRSIHRGAYFAELRTTTVRKLLPESWGFLCPV 479

Query: 483 HTPDGTPCGLLNHLTTNCQISEY---IPSKVLAQI----PSVLVSLGMLPLTPVIQSIPE 535
           HTPDG+PCGLLNH T  C++  +    P +VLA +      VL  LGM+P+ P + + P 
Sbjct: 480 HTPDGSPCGLLNHFTAACRVVTHESEEPEEVLAAVTKASAGVLGGLGMVPVAPNLPAPPT 539

Query: 536 QA-LMVMLDGRIVGYILDQIATSLVPKLRMLK---IVGEK-----------------IPK 574
              L V +DGR+VG++   +A ++V  LR +K   +  E+                 +P 
Sbjct: 540 PGHLCVQVDGRVVGHVRASLAGAMVAHLRAIKAASLAAEEQLTPGATLVPLHDEEMSVPS 599

Query: 575 SLEIVYLKRPEKGMGLYPGLYLFT---GPG----RMLRPVMNLAAGNIEWIGTFEQVFMD 627
             E+V++  P +    YPG+++FT    PG    RM+R V  +A+G  E IG+ EQ   +
Sbjct: 600 HAEVVHI--PYERGAPYPGIFIFTQARTPGREAARMIRAVRQIASGAAEMIGSLEQ--NN 655

Query: 628 ICITMKEAYPGIT-----THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
           + I M +   G T     TH E +    LS +A+L P  D NQSPRNMYQCQM KQTMGT
Sbjct: 656 MAIRMPDGGEGGTKGLKFTHAEFATGSMLSVVASLTPYSDFNQSPRNMYQCQMAKQTMGT 715

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFR 707
           P     ++   K+YR+QTP +P  R
Sbjct: 716 PAQALAHRTDNKMYRIQTPQTPIAR 740


>gi|296421898|ref|XP_002840500.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636718|emb|CAZ84691.1| unnamed protein product [Tuber melanosporum]
          Length = 660

 Score =  358 bits (919), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 235/635 (37%), Positives = 343/635 (54%), Gaps = 76/635 (11%)

Query: 54  FGKPPDKQNEFLLTLGA--PHIASFDFMLDEG--LDLAVEDIAPIEFEIYGKTLKLNIVK 109
           F  PP  ++ F   LGA  PHI SF+ +  EG  LDLA +DI     ++ G  L L I K
Sbjct: 20  FRNPPKDKSAFPALLGAVKPHIESFNAITAEGGLLDLARQDIG---VKLLGNKLSLRIDK 76

Query: 110 AAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVP 169
             + +PK+          +  P E R+    Y G  +V +    +     +  +EVG +P
Sbjct: 77  IYVGKPKISERDKTTLRREILPAECRERHITYRGKLSVKLGLRINDGPWVSQDREVGNIP 136

Query: 170 IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAW 229
           IM++S RCHL NL P  L+ER E  +E GGYFIV G EKL+RLLI  RRNHP+AI R ++
Sbjct: 137 IMVRSNRCHLENLAPHDLVERKEESEELGGYFIVNGIEKLIRLLIVQRRNHPMAIIRPSF 196

Query: 230 KNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL---LGMMQSLHE 286
             RG  ++++G+ IR V+ D+S+  NVLH++ +G+  F FS RK+  L   + +M++L E
Sbjct: 197 TGRGKSYTNMGIQIRCVRPDQSSQTNVLHYLNDGNVTFRFSWRKNEYLVPVIMIMKALVE 256

Query: 287 -------EGIHTQHDS-------------KVFFG-QIFKEKLQYDLRHLNE--------- 316
                  +G+ T  D              + F G Q+  +K   +L+HL E         
Sbjct: 257 TNDREIFDGLLTTKDMENTFLTDRVELLLRTFKGYQLLTQK--ENLQHLGEKFRIVMGVS 314

Query: 317 -----VEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
                VE+    L    L HL+D  DK+  L  M  KL+ + +G  Q D+ D+I  QE++
Sbjct: 315 PDLSDVEVGREFLKKIALVHLEDPRDKYRLLLFMARKLYALAEGTCQADNPDAIQHQEVL 374

Query: 372 TGGSLYLQLLK-KEKSGTSAVLKESDIYAA----------------FRASS--IESAMTN 412
            GG LY  ++K + +    ++++E                      F+ +S  I  ++  
Sbjct: 375 LGGFLYGMIIKERAEEYLESIVREVQREVQRGNVLDFNNKEHRTRMFQRTSENIGKSLEY 434

Query: 413 FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLR 472
           F++TGN+S+   S L L Q SGF I+AE IN  R++SHFR VHRGS+F +++++  R+L 
Sbjct: 435 FISTGNLSSP--SGLDLQQVSGFTIVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLL 492

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQS 532
            ++WGF+CPVHTPDG+PCGLLNHL   CQ+    PS V + I   LVSLG+   +P    
Sbjct: 493 PESWGFLCPVHTPDGSPCGLLNHLAHKCQVIT-APSDV-SSIRKTLVSLGV--TSPATSP 548

Query: 533 IPEQA-LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGL 590
           +P  A L V LDG IVG+   ++A  +   LR  K+ G   +P  LEI Y+  P    G 
Sbjct: 549 LPHSATLCVQLDGCIVGWCSPKLANVVADTLRFWKVEGSHGVPLDLEIGYV--PISRCGQ 606

Query: 591 YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           YPG+YLF+   RM+RPV  L     + +G FEQ +
Sbjct: 607 YPGIYLFSQQARMIRPVKYLPLDKEDLVGPFEQPY 641


>gi|22128702|gb|AAM92814.1| putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza
           sativa Japonica Group]
          Length = 855

 Score =  355 bits (910), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 250/700 (35%), Positives = 337/700 (48%), Gaps = 144/700 (20%)

Query: 319 ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           + + +L + I  HL +  DKF  L  M  KL+ +V      D  D++  QE++  G L  
Sbjct: 1   VAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLIT 60

Query: 379 QLLK-------------------KEKS----------------GTSAVLKESD------- 396
             LK                   K KS                GTS V++ S        
Sbjct: 61  VFLKDRLQDWLRKSKRLIVEEATKNKSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLM 120

Query: 397 --------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
                    + +  ++ +  A+ + +  G V++   S L L Q  G  I AE +N  RY+
Sbjct: 121 RIGAQEVRKFLSKTSAYVGKAIQSMIKVGKVNS--QSGLDLPQRDGMTIHAERLNFHRYI 178

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
           SHFR+VHRGS F +MR++  R+L  ++WGF+CPVHTPDG PCGLLNH+T+ C+IS +  S
Sbjct: 179 SHFRSVHRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNS 238

Query: 509 --------KVLAQIPSVLVSLGMLPLTPVIQSI-PEQALMVMLDGRIVGYILDQIATSLV 559
                   K+   + + LV  GM  L P I+   P + L V +DG IVG     IA++ +
Sbjct: 239 EGATKDFQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVG----SIASAKI 294

Query: 560 PKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIG 619
                     E IP+ LE+ Y+  P    G YPGLYLFT P R LRP             
Sbjct: 295 E---------EVIPEDLEVGYV--PLSHGGAYPGLYLFTNPARFLRP------------- 330

Query: 620 TFEQVFMDI-CIT-----MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
                FM+I C         + +P   TH E+  T  LS +ANL P  D NQSPRNMYQC
Sbjct: 331 ----AFMEIRCPDGGDGGRNKLFPA--THEEIHPTAILSVVANLTPWSDHNQSPRNMYQC 384

Query: 674 QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
           QM KQTMG      +++   K + LQTP +P  R   Y    MD FP GTNAIVAV+SYT
Sbjct: 385 QMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYT 444

Query: 734 GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG 793
           GYDMEDAMILNKS+ +RG   G IF++  I+L +      TE               FF 
Sbjct: 445 GYDMEDAMILNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTE---------------FF- 488

Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
                            K    RD    A+E     DGL  +G  +   +  YS      
Sbjct: 489 ----------------CKSNLSRD-TTAAIES----DGLPRIGENIFPNEQYYSVCNNLT 527

Query: 854 NRYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
                 +  G E   ++ V ++ + F +        A I  R  RNP +GDKF+SR GQK
Sbjct: 528 GTVRPIKLKGSEPAAIDYVAVNGTNFKD----RLQKANIRLRRVRNPIIGDKFSSRHGQK 583

Query: 913 GICSVKWPAEDLPFT-DSGLVPDIVFNPHGFPSRMTIGFL 951
           G+CS  WP  D+PF+ ++G+ PD++ NPH FPSRMTI  L
Sbjct: 584 GVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAML 623



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 5/56 (8%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK-----DYFGRDP 818
           G+NY+GTE +YSGV G+ M+ +IF G V+YQRLRHMVSDK+Q +     D   R P
Sbjct: 667 GFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQP 722


>gi|327284651|ref|XP_003227050.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
           [Anolis carolinensis]
          Length = 662

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 207/576 (35%), Positives = 306/576 (53%), Gaps = 58/576 (10%)

Query: 43  APSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT 102
           APSLK LT    G P +KQ + L  +   H+ SF+F + +GL  AV+ I P+EF      
Sbjct: 13  APSLKALTAPEGGLPREKQRQALQDISRAHVESFNFAVGDGLLRAVQAIPPLEFACKNTR 72

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + L I  A IS P VP G +     K YP E R  RS Y G   V V+WS +G   G   
Sbjct: 73  ITLAITSALISPPMVPKGTICKEL-KVYPAECRGRRSTYRGKLMVDVSWSVNGIPKGVIK 131

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           + +G VPIM+KSK C+L  L+P +LI+  E  +E GGYFI+ G EK++RL+I  RRN P+
Sbjct: 132 QSLGHVPIMVKSKLCNLHGLSPKELIKHHEEQEEMGGYFIINGIEKVMRLIIMPRRNFPL 191

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
           A+ +  WK+RG  +++ G+ +R V+ + +A N  LH++ NG+    F H+K +       
Sbjct: 192 AVIKPKWKSRGHGYTEYGISMRCVREEHTAVNMTLHYLENGTVMLNFIHQKELFFLPLGF 251

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                        C+  M++ + EEG  TQ  + VF GQ F+ K
Sbjct: 252 VLKGLVGFSDFQIFQELIKGKEDDTFYKNCVSQMLRMVSEEGCMTQKQALVFLGQRFRVK 311

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
           +     + +E ++ +++   CI  HL    +KF  L  MT KLF + +     ++ DS+M
Sbjct: 312 MNLPEWYPSE-QVGEFLFEQCICIHLKSKAEKFYLLCLMTRKLFTLAKEGCMEENPDSLM 370

Query: 367 LQEIMTGGSLYLQLLKK--------------EKSGTSAVLKESDIYAAFRASSIE--SAM 410
            QE++T G LYL  LK+              +K+  S +   S+         ++    +
Sbjct: 371 NQEVLTSGQLYLMFLKEKMEFWLQSIKITVDKKAQKSNITFNSEGMMKILGMGVDLTRML 430

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
              LATGN+ +   + L ++Q SG  +MA+ +N +RY+SHFR VHRG+ F +MR++  R+
Sbjct: 431 EYLLATGNLRS--RTGLGMLQTSGLSVMADKLNFVRYLSHFRCVHRGADFIKMRTTTVRK 488

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L  ++WGF+CPVHTPDG PCGL+NHLT  C+I     S     +PS+L SLG+ P   V 
Sbjct: 489 LLPESWGFLCPVHTPDGEPCGLMNHLTAPCEI--VTQSLFTTSLPSLLCSLGVTPTDGVP 546

Query: 531 QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
                +   V LDG +VG+I   +A  LV  LR  K
Sbjct: 547 NQPYSECYPVTLDGSLVGWIEKDLAPGLVETLRHCK 582


>gi|330946834|ref|XP_003306807.1| hypothetical protein PTT_20050 [Pyrenophora teres f. teres 0-1]
 gi|311315506|gb|EFQ85086.1| hypothetical protein PTT_20050 [Pyrenophora teres f. teres 0-1]
          Length = 722

 Score =  352 bits (902), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 232/716 (32%), Positives = 364/716 (50%), Gaps = 123/716 (17%)

Query: 54  FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDI------------APIEFE 97
           F  PP  +  F  L    APH  SF+ +   G  L  A+ DI            AP E  
Sbjct: 27  FRNPPKDETAFPMLAEAVAPHTESFNAIFCAGGQLSEAIRDIGTKIFLDGDPYAAPEEAG 86

Query: 98  IYGKTLKLNIVKAAISEPKVPA-GPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
              + L L I    + +P +P+   V +      P+EAR+  + Y G     + W  +  
Sbjct: 87  TRNR-LSLRIQDVFLDKPALPSTNKVALKNRNILPSEARERHATYRGKMRAQLQWRINKG 145

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+S RCHL++L+PA +++  E  +E+GGYFI+ G+EK++R L  N
Sbjct: 146 DWQEEMADLGSVPIMLRSNRCHLQDLSPAAMVKSKEESEEFGGYFIINGNEKMIRPLQVN 205

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-- 274
           RRN+P+AIKR A+ NRG  ++  G+ IRS++ D+++  N LH++ +G+  F FS RKS  
Sbjct: 206 RRNYPMAIKRGAFTNRGPGYTQFGIQIRSMRPDQTSQTNALHYLDDGNVNFRFSWRKSEY 265

Query: 275 -MCLLGMMQSLHEE--------------------------------------GIHTQHDS 295
            + L+ +M++L E                                       G+HT+  +
Sbjct: 266 LVPLVMVMKALVETNDREIFEGLVGAAGSKGLLEKQFVSDRVELLLRTFKVYGLHTKAKT 325

Query: 296 KVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-------DYWDKFLCLSHMTCK 348
           + F GQ FK  LQ     +++ +     L   +LPHL           DKF  L  MT K
Sbjct: 326 RAFLGQKFKVVLQLP-PDISDFDGGTEFLRKIVLPHLGCVAVTPAQDADKFRMLLFMTRK 384

Query: 349 LFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------------------------ 384
           L+ +V+G   +D+ D++  QEI+ GG LY  +LK+                         
Sbjct: 385 LYSLVEGECAVDNPDAVQSQEILLGGQLYGMILKERLEEWLNSFQLALREWGRKTEYKPI 444

Query: 385 ------KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
                 +  TS +L+ +        ++I  AM+ FL+TGN+ +   S L + Q SG+ ++
Sbjct: 445 VSDDFRRDWTSKILRRT-------KNNIGDAMSYFLSTGNLVSP--SGLDMQQTSGYTVV 495

Query: 439 AENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           AE IN  R++SHFR VHRG++F +++++  R+L  ++WGF       +G+PCGLLNH   
Sbjct: 496 AERINFFRFISHFRMVHRGAFFAQLKTTTVRKLLPESWGF-------NGSPCGLLNHFAH 548

Query: 499 NCQISEYIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
            C+I+    S V ++ IP ++  LG   ++    +  +++++V LDGR++G+   + A  
Sbjct: 549 KCKIAT---SNVDVSAIPKLVAKLG---VSSDSSASLDESVVVQLDGRVLGFCSPKQAKI 602

Query: 558 LVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIE 616
           +   LR  K+ G   +P  LEI Y+  P    G YPG+Y+F+   RM RPV  L    ++
Sbjct: 603 ISDTLRYWKVEGSHGVPLELEIGYV--PNSNNGQYPGVYMFSQSARMYRPVKYLPLNKLD 660

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
           ++G FEQ +M I  T  E   G +TH EL  T+ LS ++N  P  D NQSPRN+YQ
Sbjct: 661 YVGPFEQPYMSISCTDAEIVSGDSTHVELDPTNILSIVSNQTPFSDYNQSPRNLYQ 716


>gi|302785610|ref|XP_002974576.1| hypothetical protein SELMODRAFT_101823 [Selaginella moellendorffii]
 gi|300157471|gb|EFJ24096.1| hypothetical protein SELMODRAFT_101823 [Selaginella moellendorffii]
          Length = 692

 Score =  347 bits (891), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 207/534 (38%), Positives = 293/534 (54%), Gaps = 86/534 (16%)

Query: 433 SGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGL 492
           +GF ++AE +N  R++SHFR+VHRG++F   R++  R+L  ++WGF+CPVHTPDG PCGL
Sbjct: 1   NGFSVVAEKLNFFRFISHFRSVHRGAFFARQRTTSVRKLLPESWGFLCPVHTPDGEPCGL 60

Query: 493 LNHLTTNCQISEYI--------PSKVLAQIPSVLVSLGMLPLTPVIQ-SIPEQALMVMLD 543
           L HL++ C+IS  +        P  +   I +VL  LGM+ ++P++  S P + L V+LD
Sbjct: 61  LTHLSSLCKISTDLDQNNHPKDPKVIHRTIATVLAQLGMVSISPLLALSGPPKYLAVLLD 120

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G ++GY+              +  + + +P  LEI Y+  P    G YPGL+L+T P R 
Sbjct: 121 GCVLGYM-------------PVGNIPQTVPIDLEIGYV--PCTYAGAYPGLFLYTTPSRF 165

Query: 604 LRPV-MNLA---AGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIP 659
           LRP  M +A    GN              C     A P   TH EL  T  LS +A+L P
Sbjct: 166 LRPAYMEIACPDGGN--------------CGRTPSAPPA--THIELHPTAMLSVVASLTP 209

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
             D NQSPRNMYQCQMGKQT+G      +++   K+Y LQ P SP  R V+Y   +MD F
Sbjct: 210 WSDHNQSPRNMYQCQMGKQTLGFASQALKFRTDHKMYNLQNPQSPVARNVNYKKYNMDEF 269

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P+GTNA+VAV++YTG+DMEDAMI+NKSS ERG AHG I+K+  ++L              
Sbjct: 270 PLGTNAVVAVLAYTGFDMEDAMIMNKSSMERGLAHGQIYKTEHVDL-------------- 315

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
               S++Q +   G+V                + F R    + + + L  DGL ++G  +
Sbjct: 316 ----SLLQKK-SDGIV----------------NLFSRPTGKRNIHNFLDVDGLPHIGQTM 354

Query: 840 NERDPMYSYWKESENRYVTCRYSGKEEMCVE-VVRMSSGFTEGGSVTPNCAYIGYRIQRN 898
           +  DP  S            +    E + ++ V+ +  G      +      + +R  RN
Sbjct: 355 HNGDPYCSVLNTMTGDAKLHKLKAAENVVIDSVIAIGHGRDPLQKIA-----VKFRHDRN 409

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           P +GDKF+SR GQKGI S  WP  D+PF+  +G+ PDI+ NPH FPSRMTIG L
Sbjct: 410 PVIGDKFSSRHGQKGILSQLWPDIDMPFSAVTGMRPDIIINPHAFPSRMTIGML 463



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
           + G+NY+GTE MYSG+ G+ +  +IF GVV+YQRLRHMVSDK+Q +     +P  +
Sbjct: 521 QHGFNYHGTEVMYSGLLGTELTCEIFIGVVYYQRLRHMVSDKFQVRSLGAINPVTR 576


>gi|169600505|ref|XP_001793675.1| hypothetical protein SNOG_03089 [Phaeosphaeria nodorum SN15]
 gi|160705450|gb|EAT89820.2| hypothetical protein SNOG_03089 [Phaeosphaeria nodorum SN15]
          Length = 1616

 Score =  341 bits (875), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 232/709 (32%), Positives = 356/709 (50%), Gaps = 113/709 (15%)

Query: 54  FGKPPDKQNEFLLTLGA---PHIASFDFMLDEG--LDLAVEDIAPIEF---------EIY 99
           F  PP K +    TL A   PHI SF+ +   G  L+ A++DI    F         E  
Sbjct: 27  FSNPP-KDSTAYPTLAAAVDPHINSFNSIFAAGGQLEEALKDIGTKVFLDGNPYARPEEV 85

Query: 100 GKTLKLNI-VKAAISEPKV--PAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
           G+  +L++ ++    +  V  P+  V +      P E R+  + Y G     + W  +  
Sbjct: 86  GQRNRLSVRIQDVFLDKSVLPPSNKVALKNRNILPAECRERHATYRGKLRARLEWKVNNG 145

Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
                  ++G VPIML+             L++  E  +E GGYFIV G EK++R+L  N
Sbjct: 146 DWREEVCDLGAVPIMLR-------------LVKAKEESEELGGYFIVNGIEKIIRMLQVN 192

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
           RRN P+AIKR A+ NRG  ++  G+ +RS++ D+++  N LH++++G+    FS RK+  
Sbjct: 193 RRNFPMAIKRGAFTNRGPGYTQYGILLRSMRPDQTSQTNALHYLSDGNVNLRFSWRKAEY 252

Query: 277 LLGMM---QSLHEE--------------------------------------GIHTQHDS 295
           L+ +M   +SL E                                       G+H++  +
Sbjct: 253 LVPVMMVLKSLVETNDREIFEGLVGAAGSEGLAEKQFVTDRVELLLRTYKVYGLHSKAKT 312

Query: 296 KVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTCK 348
           + + GQ FK  LQ      +E E     L   +LPHL  Y        DKF  L  M  K
Sbjct: 313 RAYLGQKFKVVLQIPEDTSDE-EAGTEFLRRIVLPHLGAYHITPAQDADKFRMLLFMIRK 371

Query: 349 LFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------------------KSG 387
           L+ +V+G   +D+ D++  QEI+ GG LY  ++K+                      +  
Sbjct: 372 LYSLVEGECCVDNPDAVQNQEILLGGQLYGMIMKERLDDWLQSMRPVLQDWGRRTEWRPF 431

Query: 388 TSAVLKESDIYAAFRAS--SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
           TS   ++  I    R S   I  AM  FL+TGN+ +   + L L Q +GFV++AE IN  
Sbjct: 432 TSQEFQKDFISKILRRSQTDIGRAMEYFLSTGNLIS--PTGLDLQQTAGFVVVAEKINFY 489

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
           R++SHFR VHRG++F E++++  R+L  ++WGF+CPVHTPDG PCGLLNH +  C+++  
Sbjct: 490 RFISHFRMVHRGAFFAELKTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFSHKCKLA-- 547

Query: 506 IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
             +  ++ IP ++  LG+   +    SI E +++V LDGR++G+   + A  +   LR  
Sbjct: 548 TQNVDVSAIPKLVAQLGVSSKSSA--SI-EASVVVQLDGRVLGFCSPKQAKVIADTLRYW 604

Query: 566 KIVGE-KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV 624
           K+ G   +P  +EI Y+  P    G YPG+Y+ +   RM RPV  L    ++++G FEQ 
Sbjct: 605 KVEGSHNVPLEMEIGYV--PNSNGGQYPGVYMMSQVARMYRPVKYLPLDKLDYVGPFEQP 662

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
           +M I  T  E   G +TH E   T+  S +AN+ P  D NQSPRNMYQC
Sbjct: 663 YMSIACTDAEIVSGDSTHVEYDPTNIFSIVANMTPFSDFNQSPRNMYQC 711



 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 163/301 (54%), Gaps = 42/301 (13%)

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
            D  Q P     CQMGKQ+MGTP    RY+   K YRLQT  +P  RP  ++    DNFP 
Sbjct: 1116 DAAQKPFFTGNCQMGKQSMGTPGTAMRYRTDNKTYRLQTGQTPVVRPPLHNEYGFDNFPN 1175

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
            GTNA+VAVISYTGYDM+DAMILNKS++ERGF HG I+K+   +LE G     +    S +
Sbjct: 1176 GTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIYKTKICDLEEGARRNRSGRTISKL 1235

Query: 782  DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
             G    + +                           PA++  ++ L  DGL  +G  L  
Sbjct: 1236 FGFAPDSLV---------------------------PASR--KETLDEDGLPRIGTLLRN 1266

Query: 842  RDPMYSY----WKESENRYVT-------CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
             D + ++    +  + + YV         +Y   E   VE VR+    +E G+       
Sbjct: 1267 GDAIAAWHTVSYDAASDDYVNRDANTNYFKYKEDELAFVEEVRIIG--SEDGTQPCQKLS 1324

Query: 891  IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
            I  R+ R+P +GDKF+SR GQKG+CS KWP+ D+PF++SG+ PD++ NPH FPSRMTIG 
Sbjct: 1325 IKLRVPRSPVIGDKFSSRHGQKGVCSQKWPSIDMPFSESGIQPDVIINPHAFPSRMTIGM 1384

Query: 951  L 951
             
Sbjct: 1385 F 1385



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYNYYG E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1423 MKAGYNYYGNEPMYSGITGQELAADIYIGVVYYQRLRHMVNDKYQVR 1469


>gi|384244906|gb|EIE18403.1| beta and beta-prime subunits of DNA dependent RNA-polymerase,
           partial [Coccomyxa subellipsoidea C-169]
          Length = 694

 Score =  331 bits (849), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 284/555 (51%), Gaps = 95/555 (17%)

Query: 408 SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSE 467
           S +   L TGN+ +  NSTL L QA+GF ++AE +N  RY+SHFRA+HRG+YF ++R++ 
Sbjct: 3   SQVEYLLNTGNLVS--NSTLDLSQATGFTVVAEKLNFFRYLSHFRAIHRGAYFAQLRTTT 60

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK---VLAQIPSVLVSLGML 524
            R+L  ++WGF+CPVHTPDG PCGLL+HLT  C++    P     V   I +V  SLGM+
Sbjct: 61  VRKLLPESWGFLCPVHTPDGAPCGLLSHLTATCRVVAAPPENPEDVQQAIITVAASLGMV 120

Query: 525 -PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKR 583
                +      Q + V LDGR +G+  + +                 +P  LE+  +  
Sbjct: 121 PAAPALAPPALPQYMGVHLDGRAIGFGAETL-----------------VPADLEVALV-- 161

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICI----TMKEAYPGI 639
           P +  G YPGLYLF+GP RM+RPV+ L  G  E IGT EQ+ M I      T K ++  +
Sbjct: 162 PYEAGGPYPGLYLFSGPARMIRPVLQLPGGCPELIGTLEQINMHISSKFMHTPKFSFQLV 221

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
             H    ++                      + C  G     +   + R++   KLYRLQ
Sbjct: 222 MDHLHAQRS----------------------FTCTSGD--FSSSAQSVRHRTDAKLYRLQ 257

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           TP +P  R   YD   MD FP GTN IVAV++YTGYDMEDAMILNKS+ +RG AHG +FK
Sbjct: 258 TPQTPIARTQRYDEYHMDEFPSGTNMIVAVLAYTGYDMEDAMILNKSAVDRGLAHGTLFK 317

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
           +  ++L                 G  M        V    L  + S   Q          
Sbjct: 318 TEGLDLRDD-------------KGKAM--------VRLSPLAQVRSQGVQKN-------- 348

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
               E+++  DGL +VG  +      YS    +  +  T    G+E   V+ V +     
Sbjct: 349 ----EERIDVDGLPHVGTVVYPGQAYYSKVDRATGKAKTGNMKGEEVAVVDQVTIV---- 400

Query: 880 EGGSVTPNC--AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIV 936
             G+  PN   A I  RI RNP VGDKF+SR GQKG+ S  WP  ++PF   +G+ PD++
Sbjct: 401 --GTADPNLQRANILMRINRNPVVGDKFSSRHGQKGVLSQLWPDINMPFVAGTGMRPDLI 458

Query: 937 FNPHGFPSRMTIGFL 951
            NPH FPSRMTIG L
Sbjct: 459 INPHAFPSRMTIGML 473



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           +G++  G ET+ SGV G    A I+ G V+YQRLRHMVSDK+Q +
Sbjct: 517 AGFSRLGGETLISGVTGEEFAADIYIGPVYYQRLRHMVSDKFQVR 561


>gi|308159405|gb|EFO61937.1| DNA-directed RNA polymerase subunit B [Giardia lamblia P15]
          Length = 1236

 Score =  330 bits (845), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 236/779 (30%), Positives = 376/779 (48%), Gaps = 89/779 (11%)

Query: 47  KNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAP-IEFEI-YGKTLK 104
           + L+ ++ G        F     + H+ SF+  +D  L+  +   AP I   +   K +K
Sbjct: 32  RKLSPRHTGYTSQFNENFNTEAVSAHVNSFNDFIDS-LNTTILKHAPAIVVNLNTSKAIK 90

Query: 105 LNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE 164
           + IV   I  P             + P  AR+T + Y GP +VT+  S DG    T    
Sbjct: 91  VEIVNLTIKPPS------------FTPAFARETCANYCGPLHVTLKVS-DGPMSKTIVIN 137

Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            G VPIM+ SK C L   T  + I   E   + GGYFI  G +K+VRL ++   N P+A 
Sbjct: 138 AGDVPIMVGSKLCLLHGKTREEKIRLREDERDAGGYFISNGQDKVVRLYLDCLSNTPLAF 197

Query: 225 KRNAWKNRGLLFSDLGVYIRSVKRD--------ESATNNVLHFVTNGSARFMF------- 269
            +    +    F+  GV+ + V+ D        ++  +N L        R+++       
Sbjct: 198 TKYRSLSTMSEFAPAGVHYKGVREDGHVYSTVIQARKDNFLSVKFTIDGRYIYVPLILVL 257

Query: 270 ---------------------SHRK-----SMCLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
                                +H K     S+ +  M++  H+  I +    K   G  F
Sbjct: 258 RALVSTTDKEIYTTICTICSSAHPKEDGYVSLRIEAMLRDFHKYRIFSHKACKQLLGGKF 317

Query: 304 KEKLQY-DLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
           +  L   D   L ++E CD +    +L ++  +D   KF  +  M  K   +  G +Q D
Sbjct: 318 RMILSLLDRYDLTDIECCDLLFEQYLLINIPKEDTRAKFNMMCLMARKCLLLFGGFIQSD 377

Query: 361 SEDSIMLQEIMTGGSLY-----------LQLLKKEKSGTSAV--LKESDIYAAFRASS-- 405
           S D +  QE +T G+L+           ++L+ +  + T A+   + S+ + +   +S  
Sbjct: 378 SPDMLSSQEALTPGALFKAEIASTLIKIMRLISRNATSTGAIGSYELSNSWISHYLASPK 437

Query: 406 ----IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
               + S + +    G + A K      M  SG  ++A+ IN +R+++HFR ++RG+ F 
Sbjct: 438 LWRPLSSGLRSLAGPGVMRAYKGHDYSNM--SGISVLADRINYVRFLAHFRCINRGNAFA 495

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
             + +  R+L  +++GF C VHTPDG PCG+L HL     +    P+    QI ++ + L
Sbjct: 496 THKITSIRKLYPESYGFQCAVHTPDGAPCGILTHLCYKATVLSSTPTT--DQIANLFILL 553

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYI-LDQIATSLVPKLRMLKIVGEKIPKSLEIVY 580
               L+P +       L V+L+G I+G++  ++ A+ LV  +R  KI     P + EI++
Sbjct: 554 SQFGLSPSLSDT--YTLGVVLNGTILGFMDTNKRASQLVASIRAAKIESTIFPYT-EIIF 610

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           +++  K   L+PG+Y+ T  GR  RPV +L   ++E+I   EQ+F+ I I   +   G+T
Sbjct: 611 IEKGNKDH-LFPGIYMNTSMGRFYRPVHSLINNSLEYITPLEQIFLQIAIYGDDVRSGVT 669

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH+E++ T  LS L  L+P  D NQSPRNMY+CQM KQTM  PC N  Y+   K Y L T
Sbjct: 670 THQEVTPTSLLSILGLLVPFSDHNQSPRNMYECQMLKQTMAIPCRNLTYRYDAKSYLLTT 729

Query: 701 PASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
           P  P  R  + +D    D  P GTN +VAV +YT YDMEDA ++NK+S ERG  HG ++
Sbjct: 730 PQKPIVRNAIIHDIGGFDTHPTGTNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVY 788



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 44/61 (72%)

Query: 891  IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
            I  R  R P VGDK ASR GQKGI  ++W   D+PFT SG+VPD++ NPH FPSRMT+G 
Sbjct: 978  IVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTSSGIVPDLIINPHAFPSRMTVGM 1037

Query: 951  L 951
            L
Sbjct: 1038 L 1038



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 765  LESG-YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            L++G +N YG+E MYS + G  M A IF GVV+YQRLRHMVSDK+Q +     D   K  
Sbjct: 1076 LKTGRFNKYGSEVMYSAITGDPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQP 1135

Query: 824  EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS-SGFTEGG 882
                   G +  G    ERD + ++   +  R   C  S   E  +     S  G   GG
Sbjct: 1136 IKGRKRGGGLRFGEM--ERDALLAHGAMASLRGRLCTESDATEHVICAACGSLLGMQLGG 1193

Query: 883  SVTPNCAYIGY-RIQRNPTV 901
            ++   C   G+ R+ + P V
Sbjct: 1194 NLCRECKATGHGRLIQIPMV 1213


>gi|253746328|gb|EET01680.1| DNA-directed RNA polymerase subunit B [Giardia intestinalis ATCC
           50581]
          Length = 1235

 Score =  329 bits (843), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 257/881 (29%), Positives = 415/881 (47%), Gaps = 111/881 (12%)

Query: 47  KNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLN 106
           + L+ ++ G  P    +F     + H+ SF+  +D  L+  +   AP        T+ LN
Sbjct: 32  RKLSPRHSGYAPQFNVDFNTEAVSSHVNSFNDFID-SLNTTILKHAP------SITINLN 84

Query: 107 IVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVG 166
             KA     KV    + ++   + P  AR+T + Y G  NVT+  S DG    T     G
Sbjct: 85  TSKAI----KVELANLSLNAPPFTPAFARETHANYCGTLNVTIKVS-DGPMSKTAVINAG 139

Query: 167 RVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
            VPIM+ SK C L   T  + I   E   + GGYFI  G +K++RL ++   N P+A  +
Sbjct: 140 DVPIMVGSKLCLLYGKTREERIRLREDERDAGGYFISNGQDKVMRLHLDCLSNTPLAFTK 199

Query: 227 NAWKNRGLLFSDLGVYIRSVKRDESATNNVLH----------FVTNG------------- 263
               +    F+  G++ + V+ D    + V+           F  +G             
Sbjct: 200 YRSLSSMSEFAPAGIHYKGVREDGHVYSTVIQARKDSFLNVKFTVDGRHIYVPLMLVLRA 259

Query: 264 ----SARFMFSHRKSMC--------------LLGMMQSLHEEGIHTQHDSKVFFGQIFKE 305
               + + ++    S+C              +  M++  H+  I +    K   G  F+ 
Sbjct: 260 LVSTTDKEIYYTICSICASTDAKENGYVSLRIEAMLRDFHKYRIFSHKACKQLLGGKFRM 319

Query: 306 KLQY-DLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
            L   D   L +++ CD +    +L ++  +D   KF  +  M  K   +  G ++ D+ 
Sbjct: 320 ILSLLDRYDLTDMDCCDLLFERNLLINIPKEDTRAKFNMMCLMARKCLLLFGGFIKSDNP 379

Query: 363 DSIMLQEIMTGGSLY-----------LQLLKKEKSGTSAV----LKESDIYAAFRAS--- 404
           D +  QE +T G+ +           ++L+ +  + T A+    L  S I + + AS   
Sbjct: 380 DLLSSQEAITPGAFFKAEIASTLIKTMRLISRNATSTGAIGSYELSNSWI-SHYIASPKL 438

Query: 405 --SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
             S+ S + +    G + A +      M  SG  ++A+ IN +R+++HFR ++RG+ F  
Sbjct: 439 WRSLTSGLRSLTGPGVMRAYRGHDYSNM--SGLSVLADRINYVRFLAHFRCINRGNAFAG 496

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
            + +  R+L  +++GF C VHTPDG PCG+L HL     +    P+    Q  ++ + L 
Sbjct: 497 HKITSIRKLYPESYGFQCAVHTPDGAPCGILTHLCYKAAVLSSTPTA--DQTANLFMLLS 554

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYI-LDQIATSLVPKLRMLKIVGEKIPKSLEIVYL 581
              L+P +  +    L V+L+G ++G+I  ++ A  LV  +R  KI     P S E+V++
Sbjct: 555 QFGLSPSLSEV--YTLAVVLNGTVLGFIDTNEHAAKLVACIRAAKIQAAIFP-STEVVFI 611

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
           +R  K   L+PG+Y+ T  GR  RPV +L + + E+I   EQ+F+ I I   +  PG+TT
Sbjct: 612 ERDNKDR-LFPGVYMNTSMGRFYRPVHSLISNSQEYITPLEQIFLQIAIYGDDVRPGVTT 670

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H+E++ T  LS L  L+P  D NQSPRNMY+CQM KQTM  PC N  Y+   K Y L TP
Sbjct: 671 HQEITPTSLLSILGLLVPFSDHNQSPRNMYECQMLKQTMAIPCRNLSYRYDTKSYLLTTP 730

Query: 702 ASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
             P  R  + +D    D  P GTN +VAV +YT YDMEDA ++NK+S ERG  HG ++  
Sbjct: 731 QRPIVRNAIIHDLGGFDTHPTGTNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVYSV 790

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             I+  +       + M S V   +  A++F    H +R          + DY      +
Sbjct: 791 HDIDCRN-------DKMMSFV---LTVAEVF---PHLRR----------SPDYIITH-MD 826

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRY 861
           +  + +L  DGL  VG+ L+     Y  +   + RY T  Y
Sbjct: 827 ENYDTELDEDGLPPVGSYLSHGSVFYQTYDPPKQRYTTHLY 867



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 44/61 (72%)

Query: 891  IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
            I  R  R P VGDK ASR GQKGI  ++W   D+PFT SG+VPD++ NPH FPSRMT+G 
Sbjct: 977  IVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTSSGIVPDLIINPHAFPSRMTVGM 1036

Query: 951  L 951
            L
Sbjct: 1037 L 1037



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 765  LESG-YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            L++G +N YG+E MYS + G  M A IF GVV+YQRLRHMV+DK+Q +     D   K  
Sbjct: 1075 LKTGQFNRYGSEVMYSAMTGDPMPADIFIGVVYYQRLRHMVTDKYQVRAEGPSDKVTKQP 1134

Query: 824  EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS-SGFTEGG 882
                   G +  G    ERD + ++   +  R   C  S   E  V     S  G   GG
Sbjct: 1135 IKGRKRGGGLRFGEM--ERDALLAHGAMASLRGRLCTESDAIEHVVCAACGSLLGMQLGG 1192

Query: 883  SVTPNCAYIGY-RIQRNPTV 901
            +V   C  I + R+ + P V
Sbjct: 1193 NVCRECKAIDHGRLIQIPMV 1212


>gi|378755817|gb|EHY65843.1| RNA polymerase I [Nematocida sp. 1 ERTm2]
          Length = 1063

 Score =  328 bits (840), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 217/675 (32%), Positives = 326/675 (48%), Gaps = 111/675 (16%)

Query: 314 LNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
           L+++E     + N +  H     +K+  L     KLF  V G +  D+ D++   E +T 
Sbjct: 329 LSDMECGMNFINNTVAVHTASATEKYDLLVLCIAKLFQQVSGKIPADNGDALSFHEAITV 388

Query: 374 GSLY-------LQLLKKE------KSGTSAVLKESDIYAAFRA-----SSIESAMTNFLA 415
           G          +Q+++K        S     +  +DI A  R      S   S+M   LA
Sbjct: 389 GDTLTEIAVDKMQMIRKTFINELVASIHYLSISVTDITALSRVIKKAVSPFTSSMHRLLA 448

Query: 416 TGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDA 475
           +G +S     +  +MQ +GF I AE +N +R+ SH R++HRG++F+ MR+S  R+L  ++
Sbjct: 449 SGVLSFNNLGSYAMMQQAGFTITAERLNFLRFFSHLRSLHRGAFFEAMRTSTVRKLLPES 508

Query: 476 WGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE 535
           WGF+CPVHTPDG+PCGLL HL+  C IS     +  A   + L+  GM  L   +  IP 
Sbjct: 509 WGFLCPVHTPDGSPCGLLTHLSHACAISH----QTYALSTAELIRSGMNHLMSNLSGIP- 563

Query: 536 QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLY 595
               ++ +GR++G I ++   S +  LR  KI+G K  K  EI+Y  +          L 
Sbjct: 564 ----IIQNGRVMGTISEKSIESFIESLRRKKILGGKF-KYAEIIYNTQT---------LN 609

Query: 596 LFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI---CITMKEAYPGIT------------ 640
           +   P R +RP+MN+    +E+IG+ EQ+ + I       KE    I             
Sbjct: 610 IINTPNRFVRPLMNIKENAVEYIGSSEQLHIQIEGLSSGKKETTEKIQKIAEMCRNQDVV 669

Query: 641 ----THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
               THRE++ T+ LS +A   P+ + N SPRNMYQCQM KQ+MGT     +++   K+Y
Sbjct: 670 RVEPTHREIAATNILSVVAGSTPLGNFNPSPRNMYQCQMAKQSMGTAPHTQKHRTDQKIY 729

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
            L    +P      Y    + ++P G N  +A++SYTGYD+EDA+ILNK+S +RGF  G 
Sbjct: 730 CLDYVQTPTMHTNLYAKYGLGDYPNGKNITIAILSYTGYDLEDAVILNKASVDRGFMRGA 789

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           + K+  I      N+     M  G                                    
Sbjct: 790 VIKTEAI------NFSDMPDMEIGT----------------------------------- 808

Query: 817 DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
                 L DK   +GL  VG  + +++ +Y+            +    E M V+ V +  
Sbjct: 809 ------LNDK---EGLPDVGKLIKDKETIYTTVNTKFLEEKAHKSHALENMRVQNVSIYQ 859

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
                 S     A I  RI R PT+GDKF+SR GQKG+CS+ +  ED+PF +SG+ PD++
Sbjct: 860 -----SSNGKRAANITMRIPRVPTIGDKFSSRHGQKGVCSILYEDEDMPFNESGITPDLI 914

Query: 937 FNPHGFPSRMTIGFL 951
            NPH FPSRM+IG  
Sbjct: 915 INPHAFPSRMSIGMF 929



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 94/202 (46%), Gaps = 3/202 (1%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEF-EIYGKTLKLNIVKAAISEPKVPAGPVGIHF 126
           L  PHI S++  ++  L    +   PI   + +   + +++ +  +  P V  G      
Sbjct: 8   LAYPHIDSYNRFVNSTLPKLAQSFEPISVTDKFNNAITISVEEIRVESPAVKEGTGKKAL 67

Query: 127 NK-YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
            +   P+E R T   Y      ++    +G A  T    +G +P+M++S+ C+L  +  A
Sbjct: 68  KRNVLPSECRLTSQSYQSEVFASLQTVVNG-AVSTQEVSLGIIPVMVRSELCYLSEMKDA 126

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           Q+I+  E P+++GGYFI  G EK+ RL+   ++  P  I R     +    S+  V  +S
Sbjct: 127 QMIKAKEEPNDFGGYFIYKGTEKICRLIQIQKKYVPFGIYRPGMSKKSKNMSEHAVSYKS 186

Query: 246 VKRDESATNNVLHFVTNGSARF 267
            +     +  VLH+ T+ S + 
Sbjct: 187 ARPSGQTSMFVLHYFTDHSIKI 208



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 765  LES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            LES G+   G E +YSG+ G  +   +FFG+V+YQRLRHMVSDK+Q +     DP  K
Sbjct: 985  LESVGFKRGGGEVLYSGITGKPLAVDVFFGIVYYQRLRHMVSDKYQVRSVGAVDPLTK 1042


>gi|159117422|ref|XP_001708931.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
 gi|157437045|gb|EDO81257.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
          Length = 1235

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 232/778 (29%), Positives = 373/778 (47%), Gaps = 87/778 (11%)

Query: 47  KNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKL 105
           + L+ ++ G        F     + H+ SF+  +D      ++    I   +   K +K+
Sbjct: 32  RKLSPRHTGYTSQFNENFNTEAVSAHVNSFNDFIDSLNTTIIKHAPAIVINLSTSKAIKV 91

Query: 106 NIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV 165
            IV   I  P             + P  AR+TR+ Y GP +VT+  S DG    T     
Sbjct: 92  EIVNLTIKPPS------------FTPAFARETRANYCGPLHVTLKVS-DGPMSKTVVINA 138

Query: 166 GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
           G VP+M+ SK C L   T  + I   E   + GGYFI  G +K+VRL ++   N P+A  
Sbjct: 139 GDVPVMVGSKLCLLHGKTREERIRLREDERDAGGYFISNGQDKVVRLYLDCLSNTPLAFT 198

Query: 226 RNAWKNRGLLFSDLGVYIRSVKRD--------ESATNNVLHFVTNGSARFMF-------- 269
           +    +    F+  GV+ + V+ D        ++  +N L        R+++        
Sbjct: 199 KYRSLSTISEFAPAGVHYKGVREDGHVYSTVIQARKDNFLSVKFTIDGRYIYVPLILVLR 258

Query: 270 --------------------SHRK-----SMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
                               +H K     S+ +  M++  H+  I +    K   G  F+
Sbjct: 259 ALVSTTDKEIYSTICTICASAHPKEDGYVSLRVEAMLRDFHKYRIFSHKACKQLLGGKFR 318

Query: 305 EKLQY-DLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
             L   D   L +V+ CD +    +L ++  +D   KF  +  M  K   +    ++ DS
Sbjct: 319 MILSLLDRYDLTDVDCCDLLFEQYLLINIPKEDTRAKFNMMCLMARKCLLLFGSFIKPDS 378

Query: 362 EDSIMLQEIMTGGSLY-----------LQLLKKEKSGTSAV--LKESDIYAAFRASS--- 405
            D +  QE +T G+ +           ++L+ +  + T A+   + S+ + +   +S   
Sbjct: 379 PDLLSSQEALTPGAFFKAEVTSTLIKIMRLVSRNATSTGAIGSYELSNSWISHYIASPKL 438

Query: 406 ---IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
              + S + +    G + A K      M  SG  ++A+ IN +R+++HFR ++RG+ F  
Sbjct: 439 WRPLSSGLRSLAGPGVMRAYKGHDYSNM--SGLSVLADRINYVRFLAHFRCINRGNAFAT 496

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
            + +  R+L  +++GF C VHTPDG PCG+L HL     +    P+    QI ++ + L 
Sbjct: 497 HKITSIRKLYPESYGFQCAVHTPDGAPCGILTHLCYKATVLSSTPTT--DQIANLFILLA 554

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYI-LDQIATSLVPKLRMLKIVGEKIPKSLEIVYL 581
              L+P +  I   +L V+L+G I+GY+  ++ A  LV  +R  K+     P + E+V++
Sbjct: 555 QFGLSPSLSDI--YSLCVVLNGTILGYLDTNERAIQLVACIRAAKVKSIIFPYT-EVVFI 611

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
           ++  K   L+PG+Y+ T  GR  RPV +L   + E+I   EQ+F+ I I   +   G+TT
Sbjct: 612 EKGNKDH-LFPGIYMNTSMGRFYRPVHSLTNNSPEYITPLEQIFLQIAIYGDDVRLGVTT 670

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H+E++ T  LS L  L+P  D NQSPRNMY+CQM KQTMG PC N  Y+   K Y L TP
Sbjct: 671 HQEITPTSLLSILGLLVPFSDHNQSPRNMYECQMLKQTMGIPCRNLAYKYDTKSYLLTTP 730

Query: 702 ASPFFR-PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
             P  R  + +D    D  P GTN +VAV +YT YDMEDA ++NK+S ERG  HG ++
Sbjct: 731 QKPLVRNAIIHDIGGFDTHPTGTNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVY 788



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 44/61 (72%)

Query: 891  IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
            I  R  R P VGDK ASR GQKGI  ++W   D+PFT SG+VPD++ NPH FPSRMT+G 
Sbjct: 977  IVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTSSGIVPDLIINPHAFPSRMTVGM 1036

Query: 951  L 951
            L
Sbjct: 1037 L 1037



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 765  LESG-YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            L++G +N YG+E MYS + G  M A IF GVV+YQRLRHMVSDK+Q +     D   K  
Sbjct: 1075 LKTGQFNRYGSEVMYSAITGDPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQP 1134

Query: 824  EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS-SGFTEGG 882
                   G +  G    ERD + ++   +  R   C  S   E  V     S  G   GG
Sbjct: 1135 IKGRKRGGGLRFGEM--ERDALLAHGAMASLRGRLCTESDATEHVVCAACGSLLGMQLGG 1192

Query: 883  SVTPNCAYIGY-RIQRNPTV 901
            SV   C   G+ R+ + P V
Sbjct: 1193 SVCRECKATGHGRLIQIPMV 1212


>gi|396081035|gb|AFN82654.1| DNA-directed RNA polymerase subunit B [Encephalitozoon romaleae
           SJ-2008]
          Length = 1046

 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 237/779 (30%), Positives = 372/779 (47%), Gaps = 101/779 (12%)

Query: 72  HIASFDFMLDEG-LDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYY 130
           HI +++ + DE  LD  V  I P+   I G+T K+ + +  IS P +          + +
Sbjct: 10  HIEAYNAIFDENILDNLVAGIPPL---IRGRT-KIVVEEIHISPPFLSDRDHISVDRRLF 65

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R+    Y G     V+  +D K   T  K  G  PIM++SK CHLRN+     +  
Sbjct: 66  PRECRERGLTYKGKMVARVSLFYDNKHVMTEDKFAGYFPIMVRSKLCHLRNVENMNKV-- 123

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
           GE   E GGYFIV G +K +RL I  +RNH  A K+   +N     +  GV IR V +DE
Sbjct: 124 GEDEGEVGGYFIVNGIDKFIRLGIIQKRNHIFAFKQRKKEN---FLTGYGVSIRCVGKDE 180

Query: 251 SATNNVLHFVTNGSARFMFSHRKSMCL----------------------------LGMMQ 282
               N L++ T+G+      +R+S  L                            + +++
Sbjct: 181 IGHLNSLYYCTDGNVIIKIFYRRSTFLFPLVLILRALINTTDEELFEALGGGEKAIHLLK 240

Query: 283 SLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCL 342
              E  + ++ +   + G  F   +    +    VE    +L+  +  HL    DKF  L
Sbjct: 241 CFAEYNVFSRAECLDYIGSRFSAAINVGTK----VEAAKELLSKYVASHLTSNLDKFNFL 296

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK-------------------K 383
                KLF  V   +  D  DS    E+ T   +    +K                   K
Sbjct: 297 VLAAKKLFSFVDNEIVEDDFDSPGNHELFTVTQVLSSFIKDKIEEYMRLFPIIYKKTYFK 356

Query: 384 EKSGTSAVLKESDIYAAFRASSIE-SAMTNFLATGNVSAGK-------------NSTLQL 429
           + SG   + K+S++        ++ S +        ++ G+              S   +
Sbjct: 357 DGSGKRKLEKDSEVEDDLYEDKLDLSKIKEIFKKTPINIGQKLDLFLYGGSTVLTSCSDI 416

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
           +Q +GFVI AE IN  RY+ + R+++RGSY   +  ++ R+LR ++WGFICPVHTPDG P
Sbjct: 417 LQRTGFVITAERINFYRYLCNLRSINRGSYISSL-VTDIRKLRPESWGFICPVHTPDGAP 475

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQ-SIPEQALMVMLDGRIVG 548
           CG+L H+    ++     SK       VL   G++P+   ++  +P     V++DG+++G
Sbjct: 476 CGILLHMAKGAEVV----SKAEDFDIDVLFEFGVVPVIRGVRMDVP-----VLVDGKVIG 526

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
                  +S    +RML+    K    +EIVY + P+    ++P + +F   GR  R VM
Sbjct: 527 S-----TSSPHTFVRMLREYKVKNNLKIEIVYSEGPK----MFPSVCVFNSMGRFTRKVM 577

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
           N    + EWIG  EQVF++I +   E   G   + E+ KTD L  LA L P  D NQSPR
Sbjct: 578 NRRLNSEEWIGIMEQVFLNIDV---EKGKGEGDYYEIDKTDILGILAGLTPYSDHNQSPR 634

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           NMYQCQM KQ +G P  N + +    +Y +    SP  R   YD +   ++P+G N +VA
Sbjct: 635 NMYQCQMAKQAIGLPAYNIKARVDSSMYTINYLQSPIVRTKGYDLV--KDYPVGVNCMVA 692

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD-GSMM 786
           V+SYT YDMEDA++++K+S +RG   G ++K+  + LE G+ +    ++  G++ GS++
Sbjct: 693 VLSYTAYDMEDALVISKNSIDRGLFTGYVYKTEKVSLEKGHYFTYLLSVGKGIERGSVL 751



 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 6/120 (5%)

Query: 832 LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
           L+ VG  +     +Y Y  +S   Y + +Y   E   ++ VR+         +   CA  
Sbjct: 738 LLSVGKGIERGSVLYRYVDQSGREYES-KYYEAEGGIIDSVRVFDN-----DIGERCATF 791

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             RI RNP++GDKF+SR GQKG+CS+ WP  D+PFT+SG VPDI+ NPH FPSRMTIG L
Sbjct: 792 TIRIVRNPSIGDKFSSRHGQKGVCSMHWPTVDMPFTESGYVPDIIINPHAFPSRMTIGML 851



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+NYYG E MYSG+ G+  +  +F GVV+YQRL+HMV DK+Q +
Sbjct: 898 GFNYYGNEPMYSGISGNEFRVDVFVGVVYYQRLKHMVGDKFQVR 941


>gi|449329645|gb|AGE95915.1| DNA-directed RNA polymerase I second largest subunit
           [Encephalitozoon cuniculi]
          Length = 1062

 Score =  320 bits (821), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 226/703 (32%), Positives = 339/703 (48%), Gaps = 99/703 (14%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R+    Y G   V V+   D K   T  K  G  PIM++S  CHL  +      E 
Sbjct: 78  PRECRERGLTYKGKMVVRVSLFHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKN--EV 135

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
           GE  DE GGYFI+ G ++ VR  I  +RNH  A K    + +   FSD  V +R V RDE
Sbjct: 136 GEDEDEIGGYFIINGIDRFVRFNIMQKRNHIFAFK---MRKKTSFFSDYMVSMRCVGRDE 192

Query: 251 SATNNVLHFVTNGSARFMFSHRKSMCLL----------------------GMMQSLH--- 285
               N LH+ T+G+      H+K   L                       G  +++H   
Sbjct: 193 IGHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELFGALGGGQRAVHLLK 252

Query: 286 ---EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCL 342
              E  + ++ +   + G  F   L ++    ++ E+ + +L+  ++ HL    DKF  L
Sbjct: 253 CFAEHNVFSRTECLDYIGSRFSAILNFE----SKAEVAEEILSKYVVSHLSSNLDKFNFL 308

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL--------------------- 381
                KLF  V   +  D  DS    E+ T   +    L                     
Sbjct: 309 ILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKTYYK 368

Query: 382 ----KKEKSGTSAV--------LKESDIYAAFRASSIE--SAMTNFLATGNVSAGKNSTL 427
               K++  G S          L  S I   F+ +SI     M  FL++G+++    S  
Sbjct: 369 LEGEKRKLEGDSVTESGFCEDELDISKIREIFKRTSINIGQRMELFLSSGSITL--TSCS 426

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
            ++Q  GF I AE IN  +Y+SHFR V+RG++   M +S  R+LR ++WGF+CPVHTPDG
Sbjct: 427 DILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSMVTS-IRKLRPESWGFLCPVHTPDG 485

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
            PCG+L H+    ++     S+       +L   G++P    I+ + E  + V+++GR+V
Sbjct: 486 APCGVLLHMAKEAEVV----SRDDDFNTDILFEFGVVP---SIRGV-EMGIPVLVNGRVV 537

Query: 548 GYILDQIATSLVPKL-RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           G      +TS    L RM++    +    +E+VY   P+    ++P + +F+  GR  R 
Sbjct: 538 G------STSSPSDLTRMVREYRNRNGLMIEVVYTSEPK----MFPSVCIFSSVGRFARK 587

Query: 607 VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           VMN   G+ EWIG  EQVF++I     E   G   + E+ K+  L  +A LIP  D NQS
Sbjct: 588 VMNRRLGSEEWIGIMEQVFLNI---DTEEGAGDGDYYEIDKSGILGIIAGLIPYSDHNQS 644

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRNMYQCQM KQ +G P  N R +    +Y +    SP  R   Y+ +   ++P+G N +
Sbjct: 645 PRNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYLQSPIVRTEGYEMVK--DYPVGINCM 702

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
           VAV+SYT YDMEDA+++NK+S +RG   G ++K+  + L+ GY
Sbjct: 703 VAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTEKVPLDKGY 745



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 835 VGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
           VG ++ + D +Y Y  +    Y   RY G E   V++VR+         +   CA    R
Sbjct: 753 VGQRIQKDDTLYRYVDQDGREYEK-RYLGTEPGIVDIVRVFEN-----DMGERCATFTIR 806

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           I R+P +GDKF+SR GQKG+CS+ WP  D+PFT+SG VPDI+ NPH FPSRMTIG L
Sbjct: 807 IVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFTESGCVPDIIINPHAFPSRMTIGML 863



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+NYYG E MYSGV G+  +A IF GVV+YQRL+HMV DK+Q +
Sbjct: 914 GFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVR 957


>gi|392512568|emb|CAD26190.2| DNA-DIRECTED RNA POLYMERASE I, SECOND LARGEST SUBUNIT
           [Encephalitozoon cuniculi GB-M1]
          Length = 1050

 Score =  320 bits (821), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 225/703 (32%), Positives = 339/703 (48%), Gaps = 99/703 (14%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R+    Y G   V V+   D K   T  K  G  PIM++S  CHL  +      E 
Sbjct: 66  PRECRERGLTYKGKMVVRVSLFHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKN--EV 123

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
           GE  DE GGYFI+ G ++ +R  I  +RNH  A K    + +   FSD  V +R V RDE
Sbjct: 124 GEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAFK---MRKKTSFFSDYMVSMRCVGRDE 180

Query: 251 SATNNVLHFVTNGSARFMFSHRKSMCLL----------------------GMMQSLH--- 285
               N LH+ T+G+      H+K   L                       G  +++H   
Sbjct: 181 IGHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELFGALGGGQRAVHLLK 240

Query: 286 ---EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCL 342
              E  + ++ +   + G  F   L ++    ++ E+ + +L+  ++ HL    DKF  L
Sbjct: 241 CFAEHNVFSRTECLDYIGSRFSAILNFE----SKAEVAEEILSKYVVSHLSSNLDKFNFL 296

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL--------------------- 381
                KLF  V   +  D  DS    E+ T   +    L                     
Sbjct: 297 ILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKTYYK 356

Query: 382 ----KKEKSGTSAV--------LKESDIYAAFRASSIE--SAMTNFLATGNVSAGKNSTL 427
               K++  G S          L  S I   F+ +SI     M  FL++G+++    S  
Sbjct: 357 LEGEKRKLEGDSVTESGFCEDELDISKIREIFKRTSINIGQRMELFLSSGSITL--TSCS 414

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
            ++Q  GF I AE IN  +Y+SHFR V+RG++   M +S  R+LR ++WGF+CPVHTPDG
Sbjct: 415 DILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSMVTS-IRKLRPESWGFLCPVHTPDG 473

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
            PCG+L H+    ++     S+       +L   G++P    I+ + E  + V+++GR+V
Sbjct: 474 APCGVLLHMAKEAEVV----SRDDDFNTDILFEFGVVP---SIRGV-EMGIPVLVNGRVV 525

Query: 548 GYILDQIATSLVPKL-RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           G      +TS    L RM++    +    +E+VY   P+    ++P + +F+  GR  R 
Sbjct: 526 G------STSSPSDLTRMVREYRNRNGLMIEVVYTSEPK----MFPSVCIFSSVGRFARK 575

Query: 607 VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           VMN   G+ EWIG  EQVF++I     E   G   + E+ K+  L  +A LIP  D NQS
Sbjct: 576 VMNRRLGSEEWIGIMEQVFLNI---DTEEGAGDGDYYEIDKSGILGIIAGLIPYSDHNQS 632

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRNMYQCQM KQ +G P  N R +    +Y +    SP  R   Y+ +   ++P+G N +
Sbjct: 633 PRNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYLQSPIVRTEGYEMVK--DYPVGINCM 690

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
           VAV+SYT YDMEDA+++NK+S +RG   G ++K+  + L+ GY
Sbjct: 691 VAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTEKVPLDKGY 733



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 835 VGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
           VG ++ + D +Y Y  +    Y   RY G E   V++VR+         +   CA    R
Sbjct: 741 VGQRIQKDDTLYRYVDQDGREYEK-RYLGTEPGIVDIVRVFEN-----DMGERCATFTIR 794

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           I R+P +GDKF+SR GQKG+CS+ WP  D+PFT+SG VPDI+ NPH FPSRMTIG L
Sbjct: 795 IVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFTESGCVPDIIINPHAFPSRMTIGML 851



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+NYYG E MYSGV G+  +A IF GVV+YQRL+HMV DK+Q +
Sbjct: 902 GFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVR 945


>gi|19173004|ref|NP_597555.1| DNA-DIRECTED RNA POLYMERASE I, SECOND LARGEST SUBUNIT
           [Encephalitozoon cuniculi GB-M1]
          Length = 1062

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 225/703 (32%), Positives = 339/703 (48%), Gaps = 99/703 (14%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R+    Y G   V V+   D K   T  K  G  PIM++S  CHL  +      E 
Sbjct: 78  PRECRERGLTYKGKMVVRVSLFHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKN--EV 135

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
           GE  DE GGYFI+ G ++ +R  I  +RNH  A K    + +   FSD  V +R V RDE
Sbjct: 136 GEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAFK---MRKKTSFFSDYMVSMRCVGRDE 192

Query: 251 SATNNVLHFVTNGSARFMFSHRKSMCLL----------------------GMMQSLH--- 285
               N LH+ T+G+      H+K   L                       G  +++H   
Sbjct: 193 IGHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELFGALGGGQRAVHLLK 252

Query: 286 ---EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCL 342
              E  + ++ +   + G  F   L ++    ++ E+ + +L+  ++ HL    DKF  L
Sbjct: 253 CFAEHNVFSRTECLDYIGSRFSAILNFE----SKAEVAEEILSKYVVSHLSSNLDKFNFL 308

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL--------------------- 381
                KLF  V   +  D  DS    E+ T   +    L                     
Sbjct: 309 ILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKTYYK 368

Query: 382 ----KKEKSGTSAV--------LKESDIYAAFRASSIE--SAMTNFLATGNVSAGKNSTL 427
               K++  G S          L  S I   F+ +SI     M  FL++G+++    S  
Sbjct: 369 LEGEKRKLEGDSVTESGFCEDELDISKIREIFKRTSINIGQRMELFLSSGSITL--TSCS 426

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
            ++Q  GF I AE IN  +Y+SHFR V+RG++   M +S  R+LR ++WGF+CPVHTPDG
Sbjct: 427 DILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSMVTS-IRKLRPESWGFLCPVHTPDG 485

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
            PCG+L H+    ++     S+       +L   G++P    I+ + E  + V+++GR+V
Sbjct: 486 APCGVLLHMAKEAEVV----SRDDDFNTDILFEFGVVP---SIRGV-EMGIPVLVNGRVV 537

Query: 548 GYILDQIATSLVPKL-RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           G      +TS    L RM++    +    +E+VY   P+    ++P + +F+  GR  R 
Sbjct: 538 G------STSSPSDLTRMVREYRNRNGLMIEVVYTSEPK----MFPSVCIFSSVGRFARK 587

Query: 607 VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           VMN   G+ EWIG  EQVF++I     E   G   + E+ K+  L  +A LIP  D NQS
Sbjct: 588 VMNRRLGSEEWIGIMEQVFLNI---DTEEGAGDGDYYEIDKSGILGIIAGLIPYSDHNQS 644

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRNMYQCQM KQ +G P  N R +    +Y +    SP  R   Y+ +   ++P+G N +
Sbjct: 645 PRNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYLQSPIVRTEGYEMVK--DYPVGINCM 702

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
           VAV+SYT YDMEDA+++NK+S +RG   G ++K+  + L+ GY
Sbjct: 703 VAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTEKVPLDKGY 745



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 835 VGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
           VG ++ + D +Y Y  +    Y   RY G E   V++VR+         +   CA    R
Sbjct: 753 VGQRIQKDDTLYRYVDQDGREYEK-RYLGTEPGIVDIVRVFEN-----DMGERCATFTIR 806

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           I R+P +GDKF+SR GQKG+CS+ WP  D+PFT+SG VPDI+ NPH FPSRMTIG L
Sbjct: 807 IVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFTESGCVPDIIINPHAFPSRMTIGML 863



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+NYYG E MYSGV G+  +A IF GVV+YQRL+HMV DK+Q +
Sbjct: 914 GFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVR 957


>gi|10438131|dbj|BAB15175.1| unnamed protein product [Homo sapiens]
          Length = 459

 Score =  316 bits (810), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 204/326 (62%), Gaps = 38/326 (11%)

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           M++ I   E + G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG P L
Sbjct: 1   MNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDLNQSPRNMYQCQMGKQTMGFPLL 60

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
            ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK
Sbjct: 61  TYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNK 120

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           +S+ERGFAHG ++KS FI+L        +E +  G D S++                   
Sbjct: 121 ASWERGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV------------------- 152

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                   FG  P +  +  KL  DGL ++GAKL   DP YSY   +        Y  KE
Sbjct: 153 --------FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 204

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              V+ +++ S  T  GS    C  I  R+ RNPT+GDKFASR GQKGI S  WPAED+P
Sbjct: 205 NCVVDNIKVCSNDT--GSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMP 262

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           FT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 263 FTESGMVPDILFNPHGFPSRMTIGML 288



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 328 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 378


>gi|355712704|gb|AES04438.1| polymerase I polypeptide B, 128kDa [Mustela putorius furo]
          Length = 496

 Score =  314 bits (805), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/329 (50%), Positives = 201/329 (61%), Gaps = 38/329 (11%)

Query: 623 QVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
           Q+FM+I I   E   G+TTH+EL     LS +AN IP  D NQSPRNMYQCQMGKQTMG 
Sbjct: 1   QIFMNIAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGF 60

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
           P L ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYTGYDMEDAMI
Sbjct: 61  PLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMI 120

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           +NK+S+ERGFAHG ++KS FI+L        +E +  G D  +                 
Sbjct: 121 VNKASWERGFAHGSVYKSEFIDL--------SEKIKQGDDSLV----------------- 155

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
                      FG  P +  +  KL  DGL ++GA+L   DP Y Y   +        Y 
Sbjct: 156 -----------FGVKPGDPRILQKLDDDGLPFIGAQLQYGDPYYGYLNLNTGESFVMYYK 204

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
            KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKGI S  WP E
Sbjct: 205 SKENCIVDNIKVCSNDTGNGKF--KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPVE 262

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 263 DMPFTESGMVPDILFNPHGFPSRMTIGML 291



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 4/115 (3%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD          
Sbjct: 332 GYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGGR 391

Query: 828 GPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
              G +  G    ERD + ++       +R   C       +CV+   + S   E
Sbjct: 392 NVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 444


>gi|159485654|ref|XP_001700859.1| hypothetical protein CHLREDRAFT_113199 [Chlamydomonas reinhardtii]
 gi|158281358|gb|EDP07113.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 720

 Score =  304 bits (778), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 281/557 (50%), Gaps = 79/557 (14%)

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
           + S     L TGN+ +   S L L QA+GF ++AE +N  RY+SHFR+VHRG+YF E+R+
Sbjct: 11  VGSKFEYLLNTGNLVS--RSGLDLSQATGFTVVAEKLNFFRYLSHFRSVHRGAYFAELRT 68

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI------SEYIPSKVLAQIPSVLV 519
           +  R+L  ++WGF+CPVHTPDG PCGLLNH T  C I      +E + S  + Q   VL 
Sbjct: 69  TTVRKLLPESWGFMCPVHTPDGAPCGLLNHFTAACSIVTQGSSNEELTSLGIMQ---VLT 125

Query: 520 SLGM-LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEI 578
           +LGM      +    P   L V LDGR+VG++    A + +            +P  LE+
Sbjct: 126 ALGMSPAAPALSPPPPPDYLCVQLDGRVVGHVRSGAAAAAL------------VPYHLEV 173

Query: 579 VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPG 638
           V++  P    G +PG++LF+   RM+RPV+ +    +   G         C+       G
Sbjct: 174 VHV--PPLLGGPFPGVFLFSQSARMIRPVVQVRGRGLRGGGGERGRKWG-CVREWRHGEG 230

Query: 639 IT---THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
           ++    H    +         L                 M KQTMGTP    +++   K+
Sbjct: 231 LSVLHVHPLPRRRPRRQPRPGL----------HARRAGAMAKQTMGTPGQATQHRTDTKV 280

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           YR+QTP +P  R + Y    MD FP GTNAIVAV++YTGYDMEDAMILNKS+ ERG AH 
Sbjct: 281 YRIQTPQAPICRTIRYAEYKMDEFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHA 340

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
            ++K+  + L+      G               Q F    H Q           T+D   
Sbjct: 341 SLYKTECVNLKEERGGGGK--------------QYFAATPHTQ----------MTRD--- 373

Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
                    D++ PDGL  VG+ +      Y+   +   +  + +  G+E   V+ V + 
Sbjct: 374 --------GDRIEPDGLPAVGSIIWPGQVFYATRDDQSGKSKSHKLKGEEVAVVDQVGV- 424

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF-TDSGLVPD 934
            G   GG   P  A I  R  RNP +GDKFASR GQKG+ S+ WP  D+PF   +G+ PD
Sbjct: 425 EGRGLGG--LPQQANIRLRFNRNPMIGDKFASRHGQKGVLSILWPDTDMPFCAATGIRPD 482

Query: 935 IVFNPHGFPSRMTIGFL 951
           ++ NPH FPSRMTIG L
Sbjct: 483 LIINPHAFPSRMTIGML 499



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
           G++ YG ETM SGV G  M   I+ G V+YQRLRHMVSDK+Q + 
Sbjct: 543 GFSRYGQETMISGVTGQEMPCDIYIGPVYYQRLRHMVSDKFQVRS 587


>gi|312370726|gb|EFR19059.1| hypothetical protein AND_23136 [Anopheles darlingi]
          Length = 467

 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 249/459 (54%), Gaps = 72/459 (15%)

Query: 44  PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT- 102
           P L NL  K + + P KQNE L+ LG PH+ SF++ML+EG+   VE + P  FE+  +  
Sbjct: 5   PELTNLRPK-YREIPAKQNEILVNLGRPHVDSFNYMLEEGIGDMVERLEPQTFELPNQNR 63

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           + L I   +I+ P+VP G + +   + +P+E RQ R  Y G   +T+AW  DG      T
Sbjct: 64  VTLRITDVSIARPEVPMGTMNVAEKRVFPSECRQKRDTYGGMCTITLAWELDGFPQPAIT 123

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
           +++GRVPIML+SK C+L  ++PA+L+ERGEH DEWGGYF+V G+EKL+RLLI  RRN PI
Sbjct: 124 RDMGRVPIMLRSKACNLEGMSPAELVERGEHEDEWGGYFMVRGNEKLIRLLIMTRRNFPI 183

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM------- 275
            + RN WK RG  FS  G             NNVLH++T G+A+ M S ++++       
Sbjct: 184 LVNRNRWKERGRDFSTTG-------------NNVLHYLTTGAAKLMISIQRAIHFIPVML 230

Query: 276 -----------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                                         ++ M++ LH E +H Q D   + G +F+ +
Sbjct: 231 LMKALTDYTDNDIYRKLIAGCEDDQYFKKSVMSMLRDLHSENLHNQQDCLRYLGMLFRMR 290

Query: 307 LQYDL--RHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
           L      +   + +   ++L  C+L HLD   DKF  L  M  KL+  VQG    +S DS
Sbjct: 291 LTLCSMPKWYTDEQAGVFLLRTCVLIHLDHNEDKFNLLVFMMHKLYAAVQGRCATESLDS 350

Query: 365 IMLQEIMTGGSLYLQLLKK-----------------EKSGTSAVLKESDIYAAFRASSIE 407
           +M+QE++ GG +YL+LL++                   + +  V  +  + A    S  +
Sbjct: 351 VMMQEVIHGGHIYLKLLRELCMSTLLSVRLNLVRLLPDASSKYVTSKEVVQALKNCSGYQ 410

Query: 408 SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
           +++TNFL+TGN+   K   + LMQ SG VI+AENINRMR
Sbjct: 411 ASLTNFLSTGNLV--KAPDMGLMQDSGLVIIAENINRMR 447


>gi|164657973|ref|XP_001730112.1| hypothetical protein MGL_2494 [Malassezia globosa CBS 7966]
 gi|159104007|gb|EDP42898.1| hypothetical protein MGL_2494 [Malassezia globosa CBS 7966]
          Length = 691

 Score =  283 bits (724), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 205/648 (31%), Positives = 313/648 (48%), Gaps = 94/648 (14%)

Query: 52  KNFGKPPDKQNEF--LLTLGAPHIASFDFM-----------------LDEG--LDLAVED 90
           + F KP   + +   L  +  PHI SF+ +                 +D G  L+ +++ 
Sbjct: 44  RRFMKPSKTEWDVPALRDISRPHIESFNALWSDDPSLDAPGTGDKLSMDSGGLLERSLQT 103

Query: 91  IAPI-------EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSG 143
           ++P        E    G  L++ I   ++S P VP         + +P E R     Y G
Sbjct: 104 LSPRVVFDGSGEGADRGHRLEMRIDSVSLSRPMVPDRAKDALDRRVFPDECRNRLVSYRG 163

Query: 144 PFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIV 203
                V WS D     +  +++G+VPIM+ S RCHLR LT ++L+ + E P+E GGYFI+
Sbjct: 164 RLTARVTWSVDYGPEQSEIRDMGQVPIMVGSNRCHLRGLTSSELVAKHEEPNEMGGYFII 223

Query: 204 GGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR-DESATNNVLHFVTN 262
            G+E+L+R LI  + NH +A++R ++  RG  ++     IR V R D  +  N +H++ N
Sbjct: 224 NGNERLMRFLILAKANHVMALERPSFTRRGPSYTSKACSIRCVGRHDLMSITNSVHYLDN 283

Query: 263 GSARFMFSHRKS-------MCLLGMMQSLHEE---GIHTQHDSKVFFGQ----IFKEKLQ 308
           G     FS RK        M L  ++ +  +E    I     S  F       + +   Q
Sbjct: 284 GGVTLRFSWRKQEYMVPVVMVLKALVSATDKEIFASIVQADTSNTFLTDRVELLLRSFKQ 343

Query: 309 YDL---------------------RHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTC 347
           Y L                        +  ++ + ++   +L HLD   DK+  L  M  
Sbjct: 344 YALWTGEQCLEYLGDKFRVVMRAPEDWSHAQVGEELINRLVLTHLDMPRDKYRLLVFMIR 403

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS----GTSAVL--------KES 395
           KL+  V G    D+ DS   QE++  G LY  ++K+          +V+        KE 
Sbjct: 404 KLYAFVAGECCADNPDSPQHQEVLMPGFLYGAIIKERLDEYLINVRSVIARDVRMHAKEC 463

Query: 396 DIYAAFRAS--------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
           D + A             I + +++FLATGN+S+   S L L Q  GF I+AE +N  RY
Sbjct: 464 DFFDARYVQRVLAKVNGDIGTRLSSFLATGNLSS--PSGLDLQQVGGFTIVAEKLNFYRY 521

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SHFR+VHRG++F E++++  R+L  +AWGF+CPVHTPDG+PCGLLNH +  CQ++    
Sbjct: 522 VSHFRSVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHFSHTCQLTTR-- 579

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQA-LMVMLDGRIVGYILDQIATSLVPKLRMLK 566
              +A IP++L SLGM     V   I  Q  + V LDG ++GY    +A  +   LR+ K
Sbjct: 580 DLDVAHIPALLTSLGM--TEGVATQISAQTHVCVQLDGVMLGYATPALARHMATVLRVWK 637

Query: 567 IVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
             G   +P  LEI ++  P    G Y  +YLF+G  RM+RPV  L  G
Sbjct: 638 TEGLHAVPLDLEIGFV--PTSHGGQYRVVYLFSGRARMMRPVRYLFNG 683


>gi|169806377|ref|XP_001827933.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
 gi|161779001|gb|EDQ31028.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
          Length = 1066

 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 228/793 (28%), Positives = 363/793 (45%), Gaps = 137/793 (17%)

Query: 67  TLGAPHIASFDFMLDEGL-DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIH 125
            +G  HI  F+ + ++ +    V    P+ F    K   +N  K  I +P V    V   
Sbjct: 5   NIGNLHIQQFNALFEKNIIKNVVYKTKPLIF----KGFVMNFEKIEIHKPYVLKQDVD-- 58

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
            N+  P E R+T   YSG   V +   +  +      +  G++PIM+KS  CHL  +T  
Sbjct: 59  -NRLLPHECRETGRTYSGNIFVKIKLMYKNEILFHDYRGAGQLPIMVKSNMCHLSMMTDQ 117

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           +L+   E P+E GG+FI+ G+++++R  I ++RN    I     K +  +FS     IRS
Sbjct: 118 ELLAVKEDPNEHGGFFIINGYDRIIRFHIAHKRNWVFGIYS---KPKNSIFSGYSCSIRS 174

Query: 246 VKRDESATNNVLHFVTNGSA--RFMFSHRKSMC----LLGMMQSLHEEGIHT-------- 291
           V  DE    N +    +G+   +  F H+  +     +L  +Q+  ++ I+T        
Sbjct: 175 VCDDEIGQKNEIVHTVDGNIFLKCFFYHKGYLIPIIYILRALQNTTDKEIYTLLNQNPRA 234

Query: 292 -------------QHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDK 338
                        + +   + G  FK   + D    N  E  + +L N IL HL  + DK
Sbjct: 235 IEFLTKSNQPYYNKDECLNYLGSRFKHIFRID----NYKEAGEELL-NRILIHLSSHIDK 289

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY-------------------LQ 379
           F  L +   KLF ++ G ++ +  D     E+ T   L                    ++
Sbjct: 290 FNLLIYSINKLFKLIDGKIKSEDIDLSSNHELYTEAQLIPLCIKEHLEEFKKLFKTRIIK 349

Query: 380 LLKKE--------KSGTSAVLKESDIYAAFRASSIE------------------------ 407
           L K+E        ++ T    +  DI +  R+++I                         
Sbjct: 350 LFKREVKNQYRDNETDTEITTQIDDIMSTNRSTNINDTVEFDKLFSDEFMIKKIVELFKK 409

Query: 408 ------SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
                 + +  FL+TGN++    S   L+Q SGF  ++  IN   + SHF +V RG++F 
Sbjct: 410 TDLDIGTKIHKFLSTGNITTYNCS--DLLQTSGFTFLSGRINYWEFASHFYSVSRGAFFS 467

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI--SEYI-PSKVLAQIPSVL 518
            ++ +  R+L+ +++GF CP++TPDG+ CGLL +LT  C+I  S+YI  + +L Q+    
Sbjct: 468 NLKITSVRKLQPESFGFFCPINTPDGSLCGLLTYLTQQCEITCSKYIFDTNILYQLGVSF 527

Query: 519 VSL--GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSL 576
           ++L   M+P              V  +G+I+GY        L+  LR  +    K    +
Sbjct: 528 INLNNNMIP--------------VFYNGKIMGYT--SYPIKLIEDLRNYRC---KNKLKI 568

Query: 577 EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICI-TMKEA 635
           EIVY    E G  +   + +      ++R V N      E+IG  EQVF+DI + T+   
Sbjct: 569 EIVY----EFGDKIDEIISICDDISLLIRKVWNKKNNMEEYIGIKEQVFLDIELGTVHNT 624

Query: 636 YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
           +     ++E+   +  S +AN IP  D N SPRN+YQCQM KQ MG    N +Y+   KL
Sbjct: 625 F----NYKEIDINNMFSIIANTIPFADHNPSPRNIYQCQMAKQAMGIAAYNIKYRVDNKL 680

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           Y +     P  +  +Y     + FP+G N IVAV+SYTGYDMEDA+ILNK+S  RG  +G
Sbjct: 681 YNINYLQHPLIQTSNYQCF--EKFPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGMFNG 738

Query: 756 CIFKSMFIELESG 768
            I  +  I LE  
Sbjct: 739 FITMNEKIILEKN 751



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 76/126 (60%), Gaps = 9/126 (7%)

Query: 830 DGLVY---VGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM-SSGFTEGGSVT 885
           D ++Y   + +KL   D M +Y  +S+    T RY   E   VE +R+  +  TE  ++T
Sbjct: 752 DKILYTPPIESKLKTNDIMLTY--KSDGIIKTVRYENIEMGSVEKIRVFQNSLTEKSNLT 809

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                  +RI RNP VGDKF SR GQKGIC+  W   D+PFT++GL PDI+ NPH FPSR
Sbjct: 810 ---VIFTFRILRNPVVGDKFCSRHGQKGICAFLWNEIDMPFTENGLKPDIIINPHAFPSR 866

Query: 946 MTIGFL 951
           MTIG L
Sbjct: 867 MTIGML 872



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           E G+NYYG E MYSGV G+ ++  IF G+V+YQRL+HMVSDK+Q +
Sbjct: 914 ECGFNYYGNEPMYSGVFGTELKTDIFIGLVYYQRLKHMVSDKFQVR 959


>gi|240972645|ref|XP_002401144.1| RNA polymerase II second largest subunit (RPB2), putative [Ixodes
           scapularis]
 gi|215490975|gb|EEC00616.1| RNA polymerase II second largest subunit (RPB2), putative [Ixodes
           scapularis]
          Length = 442

 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/313 (46%), Positives = 179/313 (57%), Gaps = 79/313 (25%)

Query: 639 ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
           +TTH+EL +T  LS L N+IP  D NQSPRNMYQCQMGKQTMGTPC   RY+   KLYR+
Sbjct: 7   VTTHQELRQTSMLSVLGNMIPYSDFNQSPRNMYQCQMGKQTMGTPCQALRYRSDNKLYRI 66

Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
           QTP +PF RP  YD   MD+FP GTNAIVAVISYTGYDMEDAM+LNKSS ERGF HGC++
Sbjct: 67  QTPQTPFVRPTAYDHYHMDDFPTGTNAIVAVISYTGYDMEDAMVLNKSSVERGFKHGCVY 126

Query: 759 KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           K+  + L           + +G  G                         QT   FGR  
Sbjct: 127 KTELVNLR----------VLAGDTGR------------------------QTSLVFGRKA 152

Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
            +K LE K+  DGL Y+G K+ + DP+                                 
Sbjct: 153 TDKYLEGKVDLDGLPYIGVKVEQNDPV--------------------------------- 179

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
                    C+++     RNP +GDKFASR GQKG+CS  WP E++PFT+SG+ PDI+FN
Sbjct: 180 ---------CSFVNL---RNPMIGDKFASRHGQKGVCSQLWPIENMPFTESGMTPDIIFN 227

Query: 939 PHGFPSRMTIGFL 951
           PHGFPSRMTIG +
Sbjct: 228 PHGFPSRMTIGMM 240



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 11/81 (13%)

Query: 742 ILNKSSYERGFAHGCI-FK--------SMFIEL--ESGYNYYGTETMYSGVDGSMMQAQI 790
           +  KS+   GF H    FK          F EL  ++GYNY+GTE MYSGVDG  M+A I
Sbjct: 244 MAGKSATLHGFVHDATPFKFSENQPASEYFGELLKKAGYNYHGTERMYSGVDGREMEADI 303

Query: 791 FFGVVHYQRLRHMVSDKWQTK 811
           FFGVV+YQRLRHMV+DK+Q +
Sbjct: 304 FFGVVYYQRLRHMVADKYQVR 324


>gi|302759705|ref|XP_002963275.1| hypothetical protein SELMODRAFT_405033 [Selaginella moellendorffii]
 gi|300168543|gb|EFJ35146.1| hypothetical protein SELMODRAFT_405033 [Selaginella moellendorffii]
          Length = 1126

 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 280/556 (50%), Gaps = 96/556 (17%)

Query: 57  PPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGK-----TLKLNIVKAA 111
           P     + L  L +PHI SFD+ +  GL  AV+ IAP+E E  G         L++V A 
Sbjct: 21  PDSAAYKALEDLVSPHIDSFDYFVQRGLVEAVKGIAPVEIEQDGFHSGDFGFSLDVVLAL 80

Query: 112 ISEPKVPAGPVG-----IHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK--- 163
             +  V   PV         ++  P E RQ    Y+G  N+ +   +     G+ T+   
Sbjct: 81  TLDKPVVQPPVKDLKEKAMEHRLLPKECRQGFLSYTGALNIQLILDY-----GSMTRYHQ 135

Query: 164 -EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
             +G++PIMLKS  CHLR L+P +LI   E   E GGYFIV G E+++R LI  +RNH I
Sbjct: 136 LSLGKLPIMLKSSLCHLRGLSPQKLISLKEEGTEMGGYFIVKGIERIIRKLIVPKRNHII 195

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS-------M 275
           AI+RNA++NRG  FSD+G+ +R V+ D++ +   L+++ +G+AR  F  R+        +
Sbjct: 196 AIRRNAFQNRGAGFSDIGLMMRCVRPDQTGSTIKLYYLHHGTARLGFVIRRQEFVIPVGI 255

Query: 276 CLLGMMQSLHEE------GIHTQH---------------------------------DSK 296
            L   M +   E      GIH Q                                  D  
Sbjct: 256 ILKAFMDTSDREIFEQLSGIHVQGQEQSKGAVGSQLISQRARIIIEETQRQPCLTRLDCL 315

Query: 297 VFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGM 356
            + G+ F+  L+  L  ++  E+ + +L   +  HLD++ DKF  L HM  KLF VV G 
Sbjct: 316 RYIGETFRTPLEA-LSSMSNAEVGEDVLRRFVFVHLDNFRDKFNLLIHMLHKLFAVVDGS 374

Query: 357 VQLDSEDSIMLQEIMTGGSL---YLQ------------LLKKEK--------SGTSAVLK 393
             +DS D++  QE++  G L   YL+            LL++E         S  + VLK
Sbjct: 375 ASIDSSDTLQHQELLLPGHLMNIYLKDRLEDWLYRCKRLLQREMQLKEEFDLSDHAKVLK 434

Query: 394 ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRA 453
              I     A  I   +   L+TGN+ +   S + L QA+GF ++AE +N  R++SHFR+
Sbjct: 435 ---IVEKNNAVDIGKRIEYLLSTGNIQS--QSHMDLQQANGFSVVAEKLNFFRFISHFRS 489

Query: 454 VHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
           VHRG++F   R++  R+L  ++WGF+CPVHTPDG PCGLL HL++ C+IS  +      +
Sbjct: 490 VHRGAFFARQRTTSVRKLLPESWGFLCPVHTPDGEPCGLLTHLSSLCKISTDLDQNNHPK 549

Query: 514 IPSVLVSL--GMLPLT 527
            P V + L  G +P T
Sbjct: 550 DPKVPIDLEIGYVPCT 565



 Score =  266 bits (681), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 158/390 (40%), Positives = 211/390 (54%), Gaps = 53/390 (13%)

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI-- 628
           K+P  LEI Y+  P    G YPGL+L+T P R LRPV  L  G IE I  FEQ +M+I  
Sbjct: 552 KVPIDLEIGYV--PCTYAGAYPGLFLYTTPSRFLRPVKQLDTGAIELISAFEQAYMEIAC 609

Query: 629 -----CITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
                C     A P   TH EL  T  LS +A+  P  D NQSPRNMYQCQMGKQT+G  
Sbjct: 610 PDGGNCGRTPSAPPA--THIELHPTAMLSVVASSTPWSDHNQSPRNMYQCQMGKQTLGFA 667

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
               +++   K+Y LQ P SP  R V+Y   +MD FP+GTNA+VAV++YTG+DMEDAMI+
Sbjct: 668 SQALKFRTDHKMYNLQNPQSPVARNVNYKKYNMDEFPLGTNAVVAVLAYTGFDMEDAMIM 727

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           NKSS ERG AHG I+K+  ++L                  S++Q +   G+V        
Sbjct: 728 NKSSMERGLAHGQIYKTEHVDL------------------SLLQKK-SDGIV-------- 760

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
                   + F R    + + + L  DGL ++G  ++  DP  S            +   
Sbjct: 761 --------NLFSRPTGKRNIHNFLDVDGLPHIGQTMHNGDPYCSVLNTMTGDAKLHKLKA 812

Query: 864 KEEMCVE-VVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
            E + ++ V+ +  G      +      + +R  RNP +GDKF+SR GQKGI S  WP  
Sbjct: 813 AENVVIDSVIAIGHGRDPLQKIA-----VKFRHDRNPVIGDKFSSRHGQKGILSQLWPDI 867

Query: 923 DLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           D+PF+  +G+ PDI+ NPH FPSRMTIG L
Sbjct: 868 DMPFSAVTGMRPDIIINPHAFPSRMTIGML 897



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            + G+NY+GTE MYSG+ G+ +  +IF GVV+YQRLRHMVSDK+Q +     +P  +
Sbjct: 955  QHGFNYHGTEVMYSGLLGTELTCEIFIGVVYYQRLRHMVSDKFQVRSLGAINPVTR 1010


>gi|270015970|gb|EFA12418.1| hypothetical protein TcasGA2_TC000020 [Tribolium castaneum]
          Length = 272

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 171/235 (72%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           L  PSL N+TD NFG+PP+ QN  L  LG PH++SF++M+++GLD A+ D+ P+EF + G
Sbjct: 2   LDEPSLSNITDPNFGRPPESQNVLLQQLGHPHVSSFNYMINQGLDQAISDLNPVEFMVNG 61

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
             + L I  A++S P VP G VG+   K +P+E RQ  + Y G F   V W+ +G+    
Sbjct: 62  DKITLEITDASLSCPLVPMGTVGVKSPKVFPSECRQRAATYKGRFIARVNWAINGERQTA 121

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
           F K++G++PIM+KS +CHL  ++PA+L++ GEH  EWGGYF+V GHE+LVR+L+  RRN+
Sbjct: 122 FDKDMGQLPIMIKSNKCHLSAMSPAELVKHGEHEQEWGGYFVVKGHERLVRMLLMTRRNY 181

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM 275
           PIAIKR+ WK RG +FSD G+ +R V+ D++AT NVLHFVT+G+A+ MFS++K +
Sbjct: 182 PIAIKRSGWKARGSIFSDCGISMRCVREDQTATTNVLHFVTDGTAKLMFSYKKVL 236


>gi|313245556|emb|CBY40250.1| unnamed protein product [Oikopleura dioica]
          Length = 620

 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 184/612 (30%), Positives = 299/612 (48%), Gaps = 80/612 (13%)

Query: 41  LSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           +S+PS+K  +  N+GK P+ +N+ L  +   H+ SFD+ L+EGL      +AP EFE+  
Sbjct: 13  VSSPSIKQTSRVNYGKLPEDKNKQLKFISDTHVQSFDWFLEEGLPNIPNSVAPYEFEMEA 72

Query: 101 KT----LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWS--WD 154
                  +L +    + +P + +  V     + +P+E RQ ++ Y+ P +VT        
Sbjct: 73  NNDQMRFRLEVEHIEVGQPTLESSIV-CKDRRLFPSECRQKKTDYTAPVHVTFNLINLSS 131

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
           G++     K++ ++P+M+ S +CHLR L+P +L+ R E   E GGYFI  G+EK++RLL 
Sbjct: 132 GESQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARKEDHFEIGGYFIASGNEKVIRLLN 191

Query: 215 NNR--RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            NR  RN P+ ++RN WK R   ++D G+ IR +   E  +N  +H         +F  +
Sbjct: 192 MNRTRRNFPLGLRRNGWKRRREGYTDAGLMIRCMDNWERTSNMNVHVTKTNEMEVVFYIQ 251

Query: 273 KSMCLLGMMQ-----------SLHEEGIHT-----QHDSKV------------------- 297
           K +  + MM             ++ E + T      +DS V                   
Sbjct: 252 KQLFHVPMMTVVRALTSWTDLEIYREFMQTMSDEPNYDSAVKRMLKKLVKIQHHFLTQAK 311

Query: 298 FFGQIFKEKLQYDL--RHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQG 355
           F GQ F+    +D+     ++VE     L    L +L++  DK    + M  K F +   
Sbjct: 312 FLGQSFR---IFDICPAWKSDVEAGQAFLKRYCLIYLNNDEDKVRAFALMARKAFRISHN 368

Query: 356 MVQLDSEDSIMLQEIMTGGSLYLQLL--------------------KKEKSGTSAVLKES 395
               D  DS    +++  G L+  +                     K+ + G   V +  
Sbjct: 369 TCATDDIDSPESHDVLLPGHLFQSMTLEFFESYQRSVSMIMAKEYSKQLEKGNDEVGQNM 428

Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
             +A  +  ++       +ATGN+    N  L + Q +G V+ AE IN  R+ SHFR +H
Sbjct: 429 LSFAINKIGNMNQHFKYLIATGNLKT--NDGLGMQQLAGIVVGAEKINFARFYSHFRCIH 486

Query: 456 RGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP 515
           RG++F EMR++ PR+L T AWGFICPVHTPDG PCGLLNHL    +I+  +  +  A++ 
Sbjct: 487 RGAFFMEMRATSPRKLSTAAWGFICPVHTPDGPPCGLLNHLAHTVRIN--VKRENTAKLE 544

Query: 516 SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPK-LRMLKI-VGEKIP 573
            +L+ +G+ P       +P     V++DG+ +G+I +      V K LR LK    +++P
Sbjct: 545 ELLLEIGVKPFQANEFDVP-----VIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVP 599

Query: 574 KSLEIVYLKRPE 585
            +LEIV+   PE
Sbjct: 600 DTLEIVHCPAPE 611


>gi|330038580|ref|XP_003239637.1| DNA-directed RNA polymerase I 135K chain [Cryptomonas paramecium]
 gi|327206561|gb|AEA38739.1| DNA-directed RNA polymerase I 135K chain [Cryptomonas paramecium]
          Length = 1102

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 220/766 (28%), Positives = 359/766 (46%), Gaps = 109/766 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAP--IEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKY 129
           H+ SF++ + +GL L +  ++   ++F      + + I    +S+P      +     K 
Sbjct: 23  HLESFNYAMTQGLFLIISGLSSYFLDFIFSKYKIVIQITGLYVSKPYSLKKEIKY---KV 79

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
            P + ++T+S Y G F +++      K    F   +G++PIM+KS +C+L N    Q++E
Sbjct: 80  IPRQCKETKSSYKGDF-LSIFHINHRKERKNFLIRIGKIPIMVKSLKCNLFNANSRQMVE 138

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
             E   E GGYFIV G EK++R L+  +RN    + R A   +  L++ L    RSV + 
Sbjct: 139 IDEENLEMGGYFIVNGAEKIIRPLLVPKRNFIHVVSRIANLKKHKLYTSLSCSFRSVDKI 198

Query: 250 ESATNNVLHFVTNGS--ARFMF-------------------SHRKSMCLLG--------- 279
           +++    LH++ +G+   R +F                   S +K + + G         
Sbjct: 199 QNSKTFHLHYLISGNIHVRIVFKKHEFFIPIVILLKSLIDISDKKLIDIFGYFDLGNKYT 258

Query: 280 ---MMQSLHEE----GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL 332
              ++  + E      I  + +   F G+I K    +D   L   EI +  L+  +  HL
Sbjct: 259 RQRILTMIREAYSYCNISKRKEVLNFMGKILKTAFDFDF--LTNSEISEVFLSKYLFIHL 316

Query: 333 -DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL---------- 381
             +Y  KF  L  M  KL +  +G    ++ DSI  QE++  G LYL  L          
Sbjct: 317 GSEYKSKFDLLLLMVQKLLYAYKGNYSENNYDSIESQELLLPGHLYLIYLRERFENSIYN 376

Query: 382 ------KKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGF 435
                 KKE   T   LK S     F   +I+  +   +++GN+    N   +L+Q SG 
Sbjct: 377 YFLNKIKKENKYTLKYLKNS-----FNLVTID--IEKLVSSGNICF--NFKEELIQLSGL 427

Query: 436 VIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
            +  E +N  R++S+FR +H+G++  + + +  R++   +WG+ICPVHT DG  CG+ N+
Sbjct: 428 SVSVERLNFGRFLSYFRNIHKGNFLLQSKKNTSRKIFPHSWGYICPVHTSDGLLCGISNY 487

Query: 496 LTTNC--QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
           L+ +     S  I  K   +    L+  G       I+   +  + ++LDG+++G+  + 
Sbjct: 488 LSFSVIFNSSNSIEKK---KFKKYLIRNGF----DEIEHTQKPFIPILLDGKLLGFCENL 540

Query: 554 IATSLVPKLRMLKI--VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM--- 608
               ++ K+R  KI  +G  IPKS+EI+Y +R     G +      +   R+LRPV+   
Sbjct: 541 KLEWIIDKIRCEKISRLG-IIPKSMEILYNRRIFTK-GFFSSCSFLSEENRLLRPVLCNN 598

Query: 609 -----NL------------AAGNIEWIGTFEQVFMDICITMKEAYPG----ITTHRELSK 647
                N                 +E IG  EQ  ++I     E          TH E+  
Sbjct: 599 YVHTKNFFFSKKANQFNFQTEKELELIGPNEQFLLNIQFLENENKENRKKFFWTHLEIDS 658

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
           +  LS +A L P  D NQSPRN YQCQM KQ++G P   +  +   K Y L  P  P  R
Sbjct: 659 SIILSLVAALTPFSDLNQSPRNTYQCQMFKQSIGVPFYTFWRRNDTKNYFLLIPQIPVCR 718

Query: 708 -PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
             +  D + +D FP+G NA+VAV+ YT +DMEDAM++N  S +RGF
Sbjct: 719 NKLIQDGMYLDAFPIGVNAVVAVLCYTSFDMEDAMVINNFSIDRGF 764



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 6/102 (5%)

Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
           K  +N+ ++  Y   E+  +E ++++           NC  I  R +R P  GDKFASR 
Sbjct: 812 KTQKNQRISVYYDSYEKSVIECLKLTLK-----KEKINCT-IKLRARRKPNTGDKFASRH 865

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG+ S+  P  D+PF++ G+VPDI+FNPHGFPSRMTIG +
Sbjct: 866 GQKGVFSMNCPCIDMPFSEIGIVPDIIFNPHGFPSRMTIGVI 907



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 38/56 (67%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            ESG+ +YG E  YSG  G  ++ +++ G++HYQRL+HMV+DK+Q  +   R+   +
Sbjct: 946  ESGFKFYGNEIFYSGYTGEPLKIEVYNGIIHYQRLKHMVNDKFQVSEISPRNSITR 1001


>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM
           3638]
 gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
 gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM
           3638]
 gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
          Length = 1117

 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 253/980 (25%), Positives = 411/980 (41%), Gaps = 188/980 (19%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ GL   V +   I+ +I    +K   ++    E + P G         YP
Sbjct: 31  HLDSYNAFIERGLQEVVNEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     Y+ P  + +     G         +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 87  MDARIRNLTYAAPLYLEMIPVIKGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKLG 146

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHP----------------IAIKR 226
           E P + GGYFI+ G E+++         R L+                       +A++R
Sbjct: 147 EDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVAVER 206

Query: 227 NAWKNRGLLFSDLGVYIRSVK-----------RDESATNNVLHFVTNGSA--RFMFSHRK 273
              +  G+L+ D+    + VK           RD+    +++  V N     + MF + +
Sbjct: 207 ---RKDGILYVDIPNVPKPVKFVYVMRALGLERDK----DIVEAVGNDPEVQQIMFDNLE 259

Query: 274 SMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK--EKLQYDLRHLNEVEICDYMLTNCILPH 331
                          I TQ ++  F G++    +  +Y L+        +Y++ N +LPH
Sbjct: 260 DAS-----------DITTQQEALEFIGKLVAPGQAREYRLKR------AEYVIDNNLLPH 302

Query: 332 L----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQ 379
           +    +D   K   L  M  K+  +  G    D +D    + +   G L        + Q
Sbjct: 303 MGVSPEDRIKKAYYLGMMALKVIELSLGRRPEDDKDHYANKRLRLAGDLLKDLFRVAFSQ 362

Query: 380 LLKK-EKSGTSAVLKESDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQ 428
           L+K  +   T    ++ D Y           + R   +   + + LATG    G+    Q
Sbjct: 363 LVKDIQYQMTKTYQRKGDKYTFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQ 422

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           L+         +  N M  +SH R V      +E    E R L    WG ICP  TP+G 
Sbjct: 423 LL---------DRTNYMSTLSHLRRVT-SPLDREQPHFEARDLHGTHWGRICPTETPEGP 472

Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
            CGL+ +L    QI+  +P +   +I   L+SLG++P+   ++        V L+G ++G
Sbjct: 473 NCGLVKNLALMAQITTAVPEE---EIREYLMSLGIVPIE--VRRPDPTLWRVYLNGVLIG 527

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP-- 606
            I D    +LV ++R  +  G KI   + + Y +  ++       +Y+ +  GR+ RP  
Sbjct: 528 TIED--GKALVQRIRQDRRSG-KISDVINVAYYEDVKE-------VYVNSDDGRVRRPLI 577

Query: 607 -------------VMNLAAGNIEWIGTFEQVFMDICITMKE--AYPGI--------TTHR 643
                        V  +  G ++W    +   ++     +E  AY  +         TH 
Sbjct: 578 IVENGVPKLTKEHVQAVKEGRLKWSDLIKMGIIEYLDAEEEENAYVAMWPWEVTEEHTHL 637

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           EL     L   A+L+P P+ N +PRN Y   M KQ++G    N+R +   + + L  P  
Sbjct: 638 ELMPAAILGLPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQI 697

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P         +  ++ P G N +VAV++Y GY+MEDA+I+NK+S ERG A    F++   
Sbjct: 698 PLVNSRIMKAVGYEDRPAGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRT--- 754

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
                  Y   E  Y G                        +DK++  D   R    +  
Sbjct: 755 -------YEAEEKKYLGGQ----------------------TDKFEIPDPTVRGYRGEKY 785

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG------KEEMCVEVVRMSSG 877
              L  DGL++  +K+  +D +    + S  R++  R  G      + E  V V     G
Sbjct: 786 YRNLDEDGLIFPESKVEGKDVLVG--RTSPPRFLEERGLGTVSLQERRETSVAVRPSEKG 843

Query: 878 ------FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGL 931
                  TE G  T     +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+
Sbjct: 844 VVDKVIITETGDGT-KLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGI 902

Query: 932 VPDIVFNPHGFPSRMTIGFL 951
           VPD++ NPHG PSRMT+G L
Sbjct: 903 VPDLIVNPHGIPSRMTVGQL 922



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 959  GFKHTGREIMYDGITGKRLEADIFIGVIYYQRLHHMVADKIHAR 1002


>gi|50546993|ref|XP_500966.1| YALI0B16258p [Yarrowia lipolytica]
 gi|49646832|emb|CAG83219.1| YALI0B16258p [Yarrowia lipolytica CLIB122]
          Length = 1169

 Score =  267 bits (682), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 261/986 (26%), Positives = 426/986 (43%), Gaps = 180/986 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        + + D+ P EF +  K +++              G  GI
Sbjct: 65  HLDSFNYFVDVDLKKILAANQMVLSDVDP-EFYLKYKDIRV--------------GKPGI 109

Query: 125 HF------NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCH 178
            F      N  +P E R     Y+ P  V + ++ + K       E+G++PIML+S +CH
Sbjct: 110 KFDDKNDDNAIFPHECRLRDMTYAAPIYVDIEYTKERKIVIQRNLEIGKMPIMLRSSKCH 169

Query: 179 LRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD 238
           L++ T  ++   GE P + GGYFIV G EK++ +     +N  I     A + +G++ + 
Sbjct: 170 LQDQTEEKMAAMGECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGVVQAS 226

Query: 239 L--GVYIRSVKRDESATNNVLHFVTNG-----------SARFMFSHRKSMCLLGMMQSLH 285
           +    + R  K      N+ ++   N             A  + +  + M  +     ++
Sbjct: 227 VTSSTHERRSKTYVLTKNDKIYLKNNSIVEDIPIVLILKAAGLVTDLEIMQAVAGQNPVY 286

Query: 286 EE------------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
           +E            G+ TQ  +  + G   K   + +++  +  E  + + T+ I+ H+ 
Sbjct: 287 QEIFAVNFEECSKLGVFTQRQALEYLGSKVKTSRRSNVKLTHYQEGLEAVATS-IIAHIS 345

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEK 385
               D+ +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK  
Sbjct: 346 INNMDFTEKALYIAVMTRRVIMAMADPKMIDDRDYVGNKRLELAGQLLSLLFEDLFKKFN 405

Query: 386 SGTSA----VLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
           S   A    +LK  +  + F A         SI S M   ++TGN S  +      M+ +
Sbjct: 406 SDFKANIDKILKRPNRASMFDALLNLETHRGSITSGMNRAISTGNWSLKRFK----MERA 461

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CG
Sbjct: 462 G---VTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACG 518

Query: 492 LLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
           L+ +L     I+   E  P + L      L+    + +    +   E +  V L+G ++G
Sbjct: 519 LVKNLALMTHITTDDEEAPVRNLC----YLLGAENISVIGGAELHAEGSFGVYLNGTLIG 574

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
             + +  T  V   R  +  G K+ + + I Y+ R       +  +++ T  GR+ RP++
Sbjct: 575 --ITKFPTKFVSSFRQFRRTG-KVSEFISI-YINRH------HAAVHIATDGGRICRPLI 624

Query: 609 N--------------------------LAAGNIEWIGTFEQVFMDICITMKEA-YPGITT 641
                                      L  G +E++   E+   D  I + E      TT
Sbjct: 625 IVENEHPRVQVEHLKKLRDGEMTFDDFLKQGLVEYLDVNEE--NDSFIALYENNINAETT 682

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P
Sbjct: 683 HLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYP 742

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P  +    + +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF    + K  
Sbjct: 743 QQPMVKTRTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLKKN 802

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
              L+    Y G++ +   +DG  M+ +                  W    +   +    
Sbjct: 803 TTVLK---RYAGSDAV-DRLDGVKMERR---------------KCAWDPNSF---EEVVT 840

Query: 822 ALEDKLGPDGLVYVGAKL-------------NERDPMY--SYWKESENRYVTCRYSGKEE 866
              + LGPDGL  VG  +             N  D +   S    +E R     Y G E 
Sbjct: 841 EQHEVLGPDGLGEVGKPVKNSQVYVNRCIPVNNSDSLLNQSTSSSTEYREAPVTYRGPEP 900

Query: 867 MCVEVVRMSSGFTEGGSVTPNCAY---IGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
             ++ V +S        VT    Y   +  R  R P +GDKF+SR GQKG+C +    ED
Sbjct: 901 SIIDKVMVS--------VTDKELYLIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVNQED 952

Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +PF+DSG+ PDI+ NPHGFPSRMT+G
Sbjct: 953 MPFSDSGVCPDIIMNPHGFPSRMTVG 978



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ GY+Y G + +YSG  G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1012 ILVDHGYSYSGKDMLYSGTSGECLQAYIFFGPIYYQKLKHMVMDKMHARPRGPRAVLTRQ 1071

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E +  SS   E  
Sbjct: 1072 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMYSSDAFE-A 1114

Query: 883  SVTPNCAYIGYR 894
             V   C  +GY+
Sbjct: 1115 DVCQKCGLLGYQ 1126


>gi|110740195|dbj|BAF01996.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 578

 Score =  266 bits (680), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 158/387 (40%), Positives = 208/387 (53%), Gaps = 49/387 (12%)

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLA--AGNIEWIGTFEQVFMDIC 629
           IP+ LE+ Y+  P    G YPGLYL + P R +RPV N++  + NIE IG FEQVFM+I 
Sbjct: 2   IPEDLEVGYV--PTSMGGSYPGLYLASCPARFIRPVKNISIPSDNIELIGPFEQVFMEIS 59

Query: 630 I----TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
                        + TH E+  T  +S +ANL P  D NQSPRNMYQCQM KQTM     
Sbjct: 60  CPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQ 119

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             +++   K+Y LQTP SP  R   Y T  +D  P GTNAIVAV+++TG+DMEDAMILNK
Sbjct: 120 ALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNK 179

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           SS ERG  HG I+++  I+L                  S   ++   G   ++R      
Sbjct: 180 SSVERGMCHGQIYQTENIDL------------------SDQNSRFDSGSKSFRR------ 215

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                         NKA   ++  DGL  VG KL   +P  S + E  N+    +  G +
Sbjct: 216 ------------STNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTD 263

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
            + V+ V +     +     P  A I +R  RNP +GDKF+SR GQKG+CS  WP  D+P
Sbjct: 264 PVIVDFVSVDMKSKK----HPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMP 319

Query: 926 FTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           F   +G+ PD++ NPH FPSRMTI  L
Sbjct: 320 FNGVTGMRPDLIINPHAFPSRMTIAML 346



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           E G+N+Y TET+YSG  G  ++ +IF G V+YQRLRHMVSDK+Q +
Sbjct: 395 EKGFNHYDTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 440


>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
 gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
          Length = 1123

 Score =  266 bits (680), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 257/956 (26%), Positives = 409/956 (42%), Gaps = 139/956 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SF+  +   L   +++   IE EI G  LK+ + K  + +P+V     G    +  P
Sbjct: 24  HLDSFNDFIKNKLQEIIDEQGEIETEIPG--LKIKLGKIRVGKPRVREADRGDR--EITP 79

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +   G      +G +PIMLKS      +L   +L+E G
Sbjct: 80  MEARLRNLTYAAPIYLTMIPVENNIEGEPTEVYIGDLPIMLKSVADPTADLPAEKLVEIG 139

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           E P + GGYFI+ G EK++         R+L++  ++       N      ++ S  G  
Sbjct: 140 EDPKDPGGYFIINGTEKVIVTQEDLATNRVLVDEGKSG-----SNVTHTAKIISSTAGYR 194

Query: 243 IR-SVKRDESATNNVLHFVTNGSARFMF--------SHRKSMCLLGMMQSLHEE------ 287
           +  +++R   +T +V      G   F          + R     +   + +  E      
Sbjct: 195 VPITIERLRDSTIHVSFPAVPGRIPFAILMRALGLETDRDITFAVSFDEEIQNELLPSLE 254

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFL 340
               I TQ D+  F G     ++    +  N +E  + +L    LPHL     D   K  
Sbjct: 255 QASSITTQEDALDFIGN----RVAIGQKRENRIERAEQVLDKYFLPHLGLTPADRKKKAY 310

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSG 387
            L +   KL  +  G  + D +D    + +   G L+  L +              EKS 
Sbjct: 311 YLGYAVSKLIELQLGRREPDDKDHYANKRLKLAGDLFSSLFRVAFKAFVKDLVYQLEKSK 370

Query: 388 TSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
                +   + A  R   I   + + +ATGN   G+    QL+  + ++ M         
Sbjct: 371 VRG--RRLTLNALVRPDIITERIRHAMATGNWVGGRTGVSQLLDRTNWLSM--------- 419

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    QIS  I 
Sbjct: 420 LSHLRRVI-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQISVGIN 478

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQA--------LMVMLDGRIVGYILDQIATSLV 559
            K++ ++   L  LG++PL  +I+ I E            V+L+GR+VGY  +     L 
Sbjct: 479 DKIVEKM---LYELGVIPLEELIRKIDEGEDPSSYTNWSKVILNGRLVGYYPN--GEELA 533

Query: 560 PKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN---------- 609
            K+R  +  GE I   + + ++         Y  +Y+ +  GR+ RP++           
Sbjct: 534 NKMREKRRAGE-ISDEINVAHIV-----TDTYDEVYVNSDSGRVRRPLIVVKDGKPLVTE 587

Query: 610 ----------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSN 653
                           +  G IE++   E+    I +   +  P   TH E+     L  
Sbjct: 588 EDIQRLKKGEITFDTLVKEGKIEFLDAEEEENAYIALEPSKVTPE-HTHLEIWTPAILGI 646

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
            A++IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +    D 
Sbjct: 647 TASIIPYPEHNQSPRNTYQSAMAKQALGLYASNYQLRTDSRAHFLHYPQKPLVQTRALDI 706

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
           +  +N P G NAI+AV+S+TGY+MEDA+I+NKSS ERG     +F+S F  L     Y  
Sbjct: 707 IGYNNRPAGENAILAVMSFTGYNMEDAIIMNKSSVERG-----MFRSTFFRL-----YSA 756

Query: 774 TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLV 833
            E  Y G     +Q     GV  Y+      SD +++ D  G  P    ++   G D L+
Sbjct: 757 EEIKYPGGQEDKIQLP-EPGVRGYKG-----SDYYKSLDENGIVPPEVEVK---GGDVLI 807

Query: 834 YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
              +             E   R  +      E+  V++V ++   +EG  +      +  
Sbjct: 808 GKVSPPRFLQEFKELSPEQAKRDTSVITRHGEKGIVDLVLITE-TSEGNKLVK----VRV 862

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           R  R P +GDKFA+R GQKG+  +  P  D+P+T  G+VPDI+ NPH  PSRMT+G
Sbjct: 863 RDLRIPELGDKFATRHGQKGVIGMLIPQADMPYTVKGIVPDIILNPHSLPSRMTLG 918



 Score = 46.2 bits (108), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
           L+ G+   GTE +Y G  G  ++ +I +GVV+YQ+L HMV+DK
Sbjct: 954 LDFGFLPDGTEVVYDGRTGQKVKGRILYGVVYYQKLHHMVADK 996


>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
 gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
          Length = 1117

 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 253/964 (26%), Positives = 417/964 (43%), Gaps = 156/964 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ GL   V+++  I+ +I    +K   ++    E + P G         YP
Sbjct: 31  HLDSYNAFIERGLQEVVDEVGGIKPDIPDFEVKFGKIRVGEPEFQEPHG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 87  MDARIRNLTYSAPLYLEMIPVIRGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKLG 146

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGL--LFSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++++  + R +  +FS    Y R++   
Sbjct: 147 EDPKDPGGYFIINGSERVI-VSIEDIAPNRTLVEKDERQERYIAKVFSYRHGY-RALVTV 204

Query: 250 ESATNNVLH-----------FVTNGSARFMFSHRKSMCLLG--------MMQSLHEEG-I 289
           E   + +L+           FV    A  +   +  +  +G        +  +L +   I
Sbjct: 205 ERKKDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDI 264

Query: 290 HTQHDSKVFFGQIFK--EKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLS 343
            TQ ++  + G++    +  +Y L+        +Y++ N +LPH+    +D   K   L 
Sbjct: 265 TTQQEALEYIGKLVAPGQAREYRLKR------AEYVIDNNLLPHMGVNPEDRIRKAYYLG 318

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK---------EKS 386
            M  K+  +  G    D +D    + +   G L        + QL+K          ++ 
Sbjct: 319 MMALKVIELSLGKRGEDDKDHYANKRLRLAGDLLKDLFRVAFNQLVKDIQYQMTKTYQRR 378

Query: 387 GTSAVLKESD--IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
           G   V       I  + R   +   + + LATG    G+    QL+  + +V        
Sbjct: 379 GEKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVST------ 432

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              MSH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+ 
Sbjct: 433 ---MSHLRRVT-SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITT 488

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
            +P +   ++   L+SLG++P+  V +  PE    V L+G ++G + D    +LV K+R 
Sbjct: 489 AVPEE---EVREYLMSLGIVPIE-VRRPSPE-LWRVYLNGVLIGTVED--GKALVEKIRS 541

Query: 565 LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VMN 609
            +  G KI   + + Y +  ++       +Y+ +  GR+ RP               V  
Sbjct: 542 DRRSG-KISDIINVAYYEDVKE-------VYVNSDDGRVRRPLIIVENGKPKLTKEHVQA 593

Query: 610 LAAGNIEWIGTFEQVFMDICITMKE--AYPGI--------TTHRELSKTDFLSNLANLIP 659
           +  G ++W    +   ++     +E  AY  +         TH EL     L   A+LIP
Sbjct: 594 IKEGRLKWSDLIKMGVIEYLDAEEEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLIP 653

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
            P+ N +PRN Y   M KQ++G    N+R +   + + L  P  P         +  ++ 
Sbjct: 654 YPEHNAAPRNTYGAGMAKQSLGIGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDR 713

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P G N +VAV++Y GY+MEDA+I+NK+S ERG A    F++          Y   E  Y 
Sbjct: 714 PAGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRT----------YEAEEKKYL 763

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
           G                        +DK++      R    +     L  DGL++  +K+
Sbjct: 764 GGQ----------------------TDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKV 801

Query: 840 NERDPMYSYWKESENRYVTCRYSG------KEEMCVEVVRMSSG------FTEGGSVTPN 887
             +D +    + S  R++  R  G      + E  V V     G       TE G  T  
Sbjct: 802 EGKDVLIG--RTSPPRFLEERGLGAVSLQERRETSVAVRPSEKGIVDKVIITETGDGT-K 858

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
              +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT
Sbjct: 859 LVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMT 918

Query: 948 IGFL 951
           +G L
Sbjct: 919 VGQL 922



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G   +A IF GV++YQRL HMV+DK   +
Sbjct: 959  GFKHTGREIMYDGITGKRFEADIFIGVIYYQRLHHMVADKIHAR 1002


>gi|390960609|ref|YP_006424443.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
 gi|390518917|gb|AFL94649.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
          Length = 1122

 Score =  262 bits (670), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 254/962 (26%), Positives = 426/962 (44%), Gaps = 149/962 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +D G+   +++   ++ +I    +K   ++    E +   G         YP
Sbjct: 33  HLDSYNAFIDHGMQQVIDEFGGLKPDIPDFEVKFGKIRLGEPEFQEAQG----QRKPLYP 88

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 89  MDARIRNLTYSAPLYLELIPVIKGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLG 148

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR--GLLFSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++R+  +NR    +FS    Y R++   
Sbjct: 149 EDPKDPGGYFIINGSERVI-VSIEDLAPNKTLVERDERQNRIIAKVFSYRHGY-RALITV 206

Query: 250 ESATNNVLHFVTNGSAR---FMFSHRKSMCLLG---MMQSLHEE---------------G 288
           E   + +L+       R   F++  R ++ LL    +++++ ++                
Sbjct: 207 ERRKDGILYVNIPNVPRPVKFVYVMR-ALGLLSDKEIVEAVSDDPRIQQVLFDNLEDASD 265

Query: 289 IHTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCL 342
           I TQ ++  + G++    +  +Y LR        ++++ N +LPH+    +    K   L
Sbjct: 266 ITTQEEALDYIGKLSLPGQPREYRLRR------AEHIIDNNLLPHMGVEPERRRAKAYYL 319

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLK 393
             M  K+  +  G+   D +D    + +   G L        + QL+K  +   T    +
Sbjct: 320 GMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQR 379

Query: 394 ESDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           + + Y           + R   +   + + LATG    G+    QL+         +  N
Sbjct: 380 KGERYTFENIQRFVRNSIRPDVLSERIEHALATGAWPGGRTGVSQLL---------DRTN 430

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            M  +SH R V      ++    E R L    WG ICP  TP+G  CGL+ +L    QI+
Sbjct: 431 YMSTLSHLRRVT-SPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT 489

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKL 562
             IP K   ++   L  LG++P+    +  P  +L  + L+G ++G I D    SLV ++
Sbjct: 490 TGIPEK---EVREYLSKLGVVPIE---ERRPNPSLWRIYLNGVLIGTIED--GESLVKRI 541

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NI 615
           R  +  G +I   + +   +  +        +Y+ +  GR+ RP++ +  G       ++
Sbjct: 542 RSDRRSG-RISDVINVALYQDED-----VKEIYVNSDDGRVRRPLIIVENGKPRLTREHV 595

Query: 616 EWIGTFEQVFMDIC-------ITMKEAYPGIT-----------THRELSKTDFLSNLANL 657
           E I T +  + D+        +  +E    +            TH EL     L   A+L
Sbjct: 596 EGIKTGQLTWSDLIKMGIIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPASL 655

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           +P P+ N +PRN Y   M KQ++G    N+R +   + + +  P  P         +  +
Sbjct: 656 VPYPEHNAAPRNTYGAGMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFE 715

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G N +VAV+SY+GY+MEDA+I+NK+S ERG A    F++   E +    Y G +T 
Sbjct: 716 ERPAGQNFVVAVLSYSGYNMEDAVIMNKASIERGLARSTFFRTYEAEEK---RYLGGQTD 772

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSD-------KWQTKDYF-GRDPANKALEDKLGP 829
              V    +Q   + G  +Y   RH+  D       K   KD   GR    + LE++ G 
Sbjct: 773 RFEVPDPTIQG--YLGEKYY---RHLDEDGIIFPESKVSGKDVLVGRTSPPRFLEEQSGL 827

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
            G++                +E     VT R S  E   V+ V +    TE G  T    
Sbjct: 828 GGIIL---------------QERRETSVTVRPS--ERGIVDKVII----TETGDGT-KLV 865

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            I  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT+G
Sbjct: 866 KITTRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 925

Query: 950 FL 951
            L
Sbjct: 926 QL 927



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 964  GFKHSGREIMYDGITGRRLEADIFVGVIYYQRLHHMVADKMHAR 1007


>gi|327272386|ref|XP_003220966.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Anolis carolinensis]
          Length = 1132

 Score =  262 bits (669), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 249/907 (27%), Positives = 386/907 (42%), Gaps = 149/907 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        VGR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPVGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSM-----------------CL 277
             ++ +  N+    T    RF   H             K+M                  +
Sbjct: 207 THEKKSRTNI----TVKQGRFYLKHNTLSEDIPIAIIFKAMGVESDQEIVQMIGTEEHVM 262

Query: 278 LGMMQSLHE---EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD- 333
                SL E     I TQ  +  + G   + +  +      ++E    +L   IL H+  
Sbjct: 263 AAFAPSLEECQKAQIFTQMQALKYLGNKVRRQRMWGGPKKTKMEEARELLATTILAHVPV 322

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS 386
              ++  K +  + M  ++  + QG  ++D  D    + +   G L    +  L KK  S
Sbjct: 323 KEFNFRSKCIYTAVMVRRVI-LAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNS 381

Query: 387 GTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
               +  +          D+    R   I + M N ++TGN S  +      M   G   
Sbjct: 382 ELKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG--- 434

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 435 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 494

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L     I+  +    + ++   L    +  L     S P    +V L+G I+G I D   
Sbjct: 495 LALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH-- 551

Query: 556 TSLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---- 608
             LV   R+++  G   E +  S  +               +Y+ +  GR+ RP +    
Sbjct: 552 QKLVYTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKK 600

Query: 609 -----------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
                       LA G            +E++   E+   +I +  ++     TTH E+ 
Sbjct: 601 QTPAVTEKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEQTINKDTTHLEIE 659

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  
Sbjct: 660 PFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMV 719

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +    + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+
Sbjct: 720 KTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 779

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                Y  +T +  V G M+ A       H    RH + D        G     + +E+K
Sbjct: 780 R----YTNQT-FDKVMGPMLDA-----ATHKPIWRHEILDA------DGICSPGEKVENK 823

Query: 827 LGPDGLVYVGAKLNERDPM--YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
                LV        + P+   S  ++ + + V   Y G  +  +E V +SS   +   +
Sbjct: 824 ---QVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLI 880

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 I  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHG+PS
Sbjct: 881 K-----ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPS 935

Query: 945 RMTIGFL 951
           RMT+G L
Sbjct: 936 RMTVGKL 942



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 979  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1038

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1039 SRDGGLRLGEM--ERDCLIGY 1057


>gi|449481884|ref|XP_002196633.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
           [Taeniopygia guttata]
          Length = 1130

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 249/906 (27%), Positives = 389/906 (42%), Gaps = 147/906 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 97  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 156

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 157 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 204

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSM-----------------CL 277
             ++ +  N++  V  G  RF   H             K+M                  +
Sbjct: 205 THEKKSRTNMV--VKQG--RFYLRHNTLSEDIPIAIIFKAMGVESDQEIVQMIGTEEHVM 260

Query: 278 LGMMQSLHE---EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-- 332
                SL E     I TQ  +  + G   + +  +      ++E    +L + IL H+  
Sbjct: 261 AAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEARELLASTILTHVLV 320

Query: 333 DDYWDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSG 387
            ++  +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S 
Sbjct: 321 KEFNFRAKCIYTAVMVRRVILAQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSE 380

Query: 388 TSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
              +  +          D+    R   I + M N ++TGN S  +      M   G   +
Sbjct: 381 LKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---V 433

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L
Sbjct: 434 TQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 493

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIAT 556
                I+  +    + ++ S L    +  L     S P    +V L+G I+G I D    
Sbjct: 494 ALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--Q 550

Query: 557 SLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP------- 606
            LV   R+L+  G   E +  S  +               +Y+ +  GR+ RP       
Sbjct: 551 KLVNTFRILRRAGYINEFVSISTNLSDR-----------CVYISSDGGRLCRPYIIVKKQ 599

Query: 607 ---VMN----------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
              V N                L  G +E++   E+   +I +  +      TTH E+  
Sbjct: 600 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIAL-YENTINKDTTHLEIEP 658

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +
Sbjct: 659 FTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK 718

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+ 
Sbjct: 719 TKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR 778

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
               Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K 
Sbjct: 779 ----YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK- 821

Query: 828 GPDGLVYVGAKLNERDPM--YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
               LV        + P+   S  ++ + + V   Y G  +  +E V +SS   +   + 
Sbjct: 822 --QVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLIK 879

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                +  R  R P +GDKF+SR GQKG+C +  P ED+PF D+G+ PDI+ NPHGFPSR
Sbjct: 880 -----MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSR 934

Query: 946 MTIGFL 951
           MT+G L
Sbjct: 935 MTVGKL 940



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   
Sbjct: 974  IRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPT 1033

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1034 EGRSRDGGLRLGEM--ERDCLIGY 1055


>gi|387191409|gb|AFJ68613.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
            gaditana CCMP526]
 gi|422292684|gb|EKU19986.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
            gaditana CCMP526]
          Length = 1197

 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 265/993 (26%), Positives = 411/993 (41%), Gaps = 166/993 (16%)

Query: 72   HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-TLKLNIVKAAISEPKVPAGPVGIHFNKYY 130
            HI SFDF ++  +   V   +  E          L      + EP V         ++  
Sbjct: 65   HIDSFDFFVNREIKDIVNAASNRELRSEADPKFWLRYTDVHVGEPSVDDD--AYVSSRVT 122

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P + R     YS P  V V ++   +        +GR+PIML+S +C L   + A+L E+
Sbjct: 123  PFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEK 182

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E P + GGYFIV G E+++ +     +N  I  + N          ++   I S   D 
Sbjct: 183  KECPYDPGGYFIVKGVERVILMQEQLSKNRVIIEEDNK--------GNVSASITSSTHDR 234

Query: 251  SATNNVLHFVTNGS--------------------ARFMFSHRKSMCLLG--------MMQ 282
               +N+  FV NG+                    A  M S ++ +C++G           
Sbjct: 235  KGRSNI--FVKNGTKVYLKNNLLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPEMLDAFAP 292

Query: 283  SLHEE---GIHTQHDSKVFFGQIFKEKLQ------------YDLRHLNEVEICDYMLTNC 327
            SL E    GI TQ  +  + G   +   Q            +  R  +  E    +L + 
Sbjct: 293  SLEEPYHLGICTQAQALRYIGAKIRNTTQNRGPGPSGMGFAFYRRASSPEEEAREVLASV 352

Query: 328  ILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSED--------------SIMLQE 369
            IL H+     D+  K + + H+  ++    +   QLD +D              S++ ++
Sbjct: 353  ILNHVPVINFDFRTKCIFVCHVIRRVLLTHRDRSQLDDKDYYGNKRLELAGQLLSLLFED 412

Query: 370  IMTGGSLYLQLLKKEKSGTSAVLKES--DIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
            +     L +QL K+   G S   +    D+    R  +I +     +ATGN    +    
Sbjct: 413  LFK--RLNVQLKKQADQGLSKPNRTQSFDVIKCIRTDTITNGFIQAIATGNWKLQRFR-- 468

Query: 428  QLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTP 485
              M   G   + + + R+ Y+S    + R  S F++ R  S PR L+   WG ICP  TP
Sbjct: 469  --MDRQG---VTQVLTRLSYISCLGMMTRINSQFEKTRKVSGPRSLQPSQWGMICPADTP 523

Query: 486  DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLD 543
            +G  CGL+ +L     ++    S+    I  +   LG+  +T +   +       +V L+
Sbjct: 524  EGEACGLVKNLALLAHVTTDEESE---PIRKLCFDLGIEDVTLLSGAEINASSNYLVFLN 580

Query: 544  GRIVG-------------------YILDQIATSLVPKLRMLKIV--GEKIPKSLEIVYLK 582
            G IVG                    + + ++  L    R + I   G ++ + L +    
Sbjct: 581  GLIVGCHSRPLRFVRLLRLLRRKGLVAEFVSVCLHEVQRAIYIATDGGRVCRPLLVC--- 637

Query: 583  RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT-T 641
              EKG+     + +      +L     +  G +E++   E+   +  I + +    +  T
Sbjct: 638  --EKGVPRLTNMMMRQLSSGLLTLAELIRCGVVEYVDVNEE--NNCLIALAQTQLTVKHT 693

Query: 642  HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
            H E+     L  +A LIP P  NQSPRN YQC MGKQ MGT  LN   +    LY +  P
Sbjct: 694  HMEIDPLTVLGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTVALNQYERLDSLLYAMVYP 753

Query: 702  ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
              P       D ++ +  P G NAIVAV+SY+GYD+EDA++LNK+S +RGF    I +  
Sbjct: 754  QKPLVTTRTLDLVNFNELPGGQNAIVAVMSYSGYDIEDAVVLNKASLDRGFGRCLILRKH 813

Query: 762  FIELE-----SGYNYYG----TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
               L      +  N  G    T  + SG+ G    AQ      +  R             
Sbjct: 814  QTSLRKYANGAADNLRGPPEDTAAVCSGMGGEPSAAQSNLAGAYSIR------------- 860

Query: 813  YFGRDPANKALEDKLGPDGLVYVGAKL-------NERDP-------MYSYWKESENRYVT 858
               RDP  +  E  L  DG+  VG +L       N+  P       M S    +  +   
Sbjct: 861  ---RDPRLRRFE-ALDKDGICQVGERLGNGSVMINKESPISVADLNMGSGADPTPFKPTP 916

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
              Y G     V+ V ++S   EGG +      +  R  R P VGDKF+SR GQKG+C + 
Sbjct: 917  LSYKGPAPSHVDQVLITS--NEGGDLL---VKVSVRQCRRPEVGDKFSSRHGQKGVCGII 971

Query: 919  WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
               ED+PF D G+ PD++ NPHGFPSRMT+G L
Sbjct: 972  VAQEDMPFNDDGICPDLIMNPHGFPSRMTVGKL 1004



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +E+G++Y G E + SG  G  +   IF G V YQ+L+HMV DK   +    R    +   
Sbjct: 1043 VENGFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARGPRAVLTRQPT 1102

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS-GFTEGGS 883
            +    DG + +G    ERD +  Y              G   +  E + +SS  FT   +
Sbjct: 1103 EGRSRDGGLRLGEM--ERDCLIGY--------------GASSLLTERLMISSDAFT--AT 1144

Query: 884  VTPNCAYIGY 893
            V   C  +GY
Sbjct: 1145 VCERCGLLGY 1154


>gi|363727935|ref|XP_416307.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gallus
           gallus]
          Length = 1132

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 248/906 (27%), Positives = 389/906 (42%), Gaps = 147/906 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSM-----------------CL 277
             ++ +  N++  V  G  RF   H             K+M                  +
Sbjct: 207 THEKKSRTNMV--VKQG--RFYLRHNTLSEDIPIAIIFKAMGVESDQEIVQMIGTEEHVM 262

Query: 278 LGMMQSLHE---EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-- 332
                SL E     I TQ  +  + G   + +  +      ++E    +L + IL H+  
Sbjct: 263 AAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEARELLASTILTHVLV 322

Query: 333 DDYWDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSG 387
            ++  +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S 
Sbjct: 323 KEFNFRAKCIYTAVMVRRVILAQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSE 382

Query: 388 TSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
              +  +          D+    R   I + M N ++TGN S  +      M   G   +
Sbjct: 383 LKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---V 435

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L
Sbjct: 436 TQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 495

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIAT 556
                I+  +    + ++ S L    +  L     S P    +V L+G I+G I D    
Sbjct: 496 ALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--Q 552

Query: 557 SLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP------- 606
            LV   R+++  G   E +  S  +               +Y+ +  GR+ RP       
Sbjct: 553 KLVNTFRIMRRAGYINEFVSISTNLSDR-----------CVYISSDGGRLCRPYIIVKKQ 601

Query: 607 ---VMN----------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
              V N                L  G +E++   E+   +I +  +      TTH E+  
Sbjct: 602 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEP 660

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +
Sbjct: 661 FTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK 720

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+ 
Sbjct: 721 TKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR 780

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
               Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K 
Sbjct: 781 ----YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK- 823

Query: 828 GPDGLVYVGAKLNERDPM--YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
               LV        + P+   S  ++ + + V   Y G  +  +E V +SS   +   + 
Sbjct: 824 --QVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLIK 881

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                +  R  R P +GDKF+SR GQKG+C +  P ED+PF D+G+ PDI+ NPHGFPSR
Sbjct: 882 -----MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSR 936

Query: 946 MTIGFL 951
           MT+G L
Sbjct: 937 MTVGKL 942



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   
Sbjct: 976  IRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPT 1035

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1036 EGRSRDGGLRLGEM--ERDCLIGY 1057


>gi|326912147|ref|XP_003202415.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Meleagris gallopavo]
          Length = 1129

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 248/906 (27%), Positives = 389/906 (42%), Gaps = 147/906 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 96  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 155

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 156 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 203

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSM-----------------CL 277
             ++ +  N++  V  G  RF   H             K+M                  +
Sbjct: 204 THEKKSRTNLV--VKQG--RFYLRHNTLSEDIPIAIIFKAMGVESDQEIVQMIGTEEHVM 259

Query: 278 LGMMQSLHE---EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-- 332
                SL E     I TQ  +  + G   + +  +      ++E    +L + IL H+  
Sbjct: 260 AAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEARELLASTILTHVLV 319

Query: 333 DDYWDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSG 387
            ++  +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S 
Sbjct: 320 KEFNFRAKCIYTAVMVRRVILAQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSE 379

Query: 388 TSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
              +  +          D+    R   I + M N ++TGN S  +      M   G   +
Sbjct: 380 LKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---V 432

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L
Sbjct: 433 TQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 492

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIAT 556
                I+  +    + ++ S L    +  L     S P    +V L+G I+G I D    
Sbjct: 493 ALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--Q 549

Query: 557 SLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP------- 606
            LV   R+++  G   E +  S  +               +Y+ +  GR+ RP       
Sbjct: 550 KLVNTFRIMRRAGYINEFVSISTNLSDR-----------CVYISSDGGRLCRPYIIVKKQ 598

Query: 607 ---VMN----------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
              V N                L  G +E++   E+   +I +  +      TTH E+  
Sbjct: 599 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEP 657

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +
Sbjct: 658 FTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK 717

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+ 
Sbjct: 718 TKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR 777

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
               Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K 
Sbjct: 778 ----YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK- 820

Query: 828 GPDGLVYVGAKLNERDPM--YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
               LV        + P+   S  ++ + + V   Y G  +  +E V +SS   +   + 
Sbjct: 821 --QVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLIK 878

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                +  R  R P +GDKF+SR GQKG+C +  P ED+PF D+G+ PDI+ NPHGFPSR
Sbjct: 879 -----MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSR 933

Query: 946 MTIGFL 951
           MT+G L
Sbjct: 934 MTVGKL 939



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   
Sbjct: 973  IRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPT 1032

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1033 EGRSRDGGLRLGEM--ERDCLIGY 1054


>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
 gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
           [Pyrococcus horikoshii OT3]
          Length = 1117

 Score =  260 bits (664), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 256/965 (26%), Positives = 415/965 (43%), Gaps = 158/965 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ GL   V++   I+ +I    +K   ++    E + P G         YP
Sbjct: 31  HLDSYNAFIERGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 87  MDARIRNLTYSAPLYLEMIPVIRGIEQDPVEVRIGELPIMLKSKACRLYGLSDEELIKLG 146

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK-RNAWKNRGLLFSDLGVYIRSVKRDE 250
           E P + GGYFI+ G E+++  + +   N  +  K     K    +FS    Y R++   E
Sbjct: 147 EDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGY-RALVTVE 205

Query: 251 SATNNVLH-----------FVTNGSARFMFSHRKSMCLLG--------MMQSLHEEG-IH 290
              + +L+           FV    A  +   +  +  +G        +  +L +   I 
Sbjct: 206 RKKDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDIT 265

Query: 291 TQHDSKVFFGQIFK--EKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSH 344
           TQ ++  + G++    +  +Y L+        +Y++ N +LPH+    +D   K   L  
Sbjct: 266 TQQEALEYIGKLVAPGQAREYRLKR------AEYVIDNNLLPHMGVTPEDRIRKAYYLGM 319

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK---------EKSG 387
           M  K+  +  G    D +D    + +   G L        + QL+K          ++ G
Sbjct: 320 MALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLIKDIQYQMTKTYQRRG 379

Query: 388 TSAVLKESDIYAAFRASSIESAMT----NFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
              V   S+I+   R S     +T    + LATG    G+    QL+  + +V       
Sbjct: 380 EKYVF--SNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYV------- 430

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
               +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+
Sbjct: 431 --STLSHLRRVT-SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT 487

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
             +P +   ++   L+SLG++P+  V +  PE    V L+G ++G + D    +LV +++
Sbjct: 488 TAVPEE---EVREYLMSLGIVPIE-VRRPSPE-LWRVYLNGVLIGTVED--GKALVERIK 540

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VM 608
             +  G KI   + + Y +  ++       +Y+ +  GR+ RP               V 
Sbjct: 541 KDRRSG-KISDIINVAYYEDVKE-------VYVNSDDGRVRRPLIIVENGVPKLTKEHVQ 592

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKE--AYPGI--------TTHRELSKTDFLSNLANLI 658
            +  G ++W        ++     +E  AY  +         TH EL     L   A+LI
Sbjct: 593 AIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLI 652

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P P+ N +PRN Y   M KQ++G    N+R +   + + L  P  P         +  ++
Sbjct: 653 PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED 712

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
            P G N +VAV++Y GY+MEDA+I+NK+S ERG A    F++   E +    Y G +T  
Sbjct: 713 RPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEK---KYLGGQT-- 767

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK 838
              D   + A    G    +  RH                        L  DGL++  +K
Sbjct: 768 ---DRFEIPAPTVRGYRGEKYYRH------------------------LDEDGLIFPESK 800

Query: 839 LNERDPMYSYWKESENRYVTCRYSG------KEEMCVEVVRMSSG------FTEGGSVTP 886
           +  +D +    + S  R++  R  G      + E  V V     G       TE G  T 
Sbjct: 801 VEGKDVLIG--RTSPPRFLEERGLGAVSLQERRETSVAVRPSEKGIVDKVIITETGDGT- 857

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRM
Sbjct: 858 KLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 917

Query: 947 TIGFL 951
           T+G L
Sbjct: 918 TVGQL 922



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G   +A IF G+++YQRL HMV+DK   +
Sbjct: 959  GFKHTGREIMYDGITGKRFEADIFIGIIYYQRLHHMVADKIHAR 1002


>gi|347829559|emb|CCD45256.1| similar to POLR1B protein [Botryotinia fuckeliana]
          Length = 556

 Score =  260 bits (664), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 151/360 (41%), Positives = 197/360 (54%), Gaps = 44/360 (12%)

Query: 603 MLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPD 662
           M+RPV  L     +++G  EQ FM I +T +E   G  TH E   T  LS LAN+ P  D
Sbjct: 1   MVRPVKYLPLDKEDFVGPLEQPFMSIAVTEQEIESGEHTHVEFDPTHILSILANMTPFSD 60

Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
            NQSPRNMYQCQMGKQ+MGTP    RY+   K YRLQT  +P  R   ++    DNFP G
Sbjct: 61  FNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKAYRLQTGQTPIVRAPLHNEYGFDNFPNG 120

Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
            N++VAVISYTGYDM+DAMI+NKS++ERGF HG I+K+   ELE G+     + +     
Sbjct: 121 MNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKYELEEGHKSRSAKNI----- 175

Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER 842
                 +  FG         +V  +W            KA  D+   DGL ++G  +   
Sbjct: 176 ------KKLFGFA----PGGLVKAEW------------KAAIDE---DGLPFIGRMVQNG 210

Query: 843 DPMYSYWK----ESENRYVTC-------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
           D + + W     +   +YV         +Y   E   +E VR+     E G        +
Sbjct: 211 D-LIAAWHTVSMDENGKYVNRDGQTHFEKYKETEIAFIEEVRLIG--NENGIEPCQAISV 267

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             RI R+P +GDKF+SR GQKG+CS KWPA D+PFT+SG+ PD + NPH FPSRMTIG  
Sbjct: 268 KLRIPRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFTESGIQPDTIINPHAFPSRMTIGMF 327



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 38/47 (80%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           +++GYNYYG E MYSG+ G  + A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 365 MKAGYNYYGNEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKYQVR 411


>gi|449276422|gb|EMC84954.1| DNA-directed RNA polymerase III subunit RPC2, partial [Columba
           livia]
          Length = 1105

 Score =  259 bits (663), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 250/907 (27%), Positives = 387/907 (42%), Gaps = 149/907 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 72  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 131

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 132 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 179

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSM-----------------CL 277
             ++ +  N++  V  G  RF   H             K+M                  +
Sbjct: 180 THEKKSRTNMV--VKQG--RFYLRHNTLSEDIPIAIIFKAMGVESDQEIVQMIGTEEHVM 235

Query: 278 LGMMQSLHE---EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL-- 332
                SL E     I TQ  +  + G   + +  +      ++E    +L + IL H+  
Sbjct: 236 AAFAPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGPKKTKMEEARELLASTILTHVLV 295

Query: 333 DDYWDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSG 387
            ++  +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S 
Sbjct: 296 KEFNFRAKCIYTAVMVRRVILAQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSE 355

Query: 388 TSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
              +  +          D+    R   I + M N ++TGN S  +      M   G   +
Sbjct: 356 LKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---V 408

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L
Sbjct: 409 TQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 468

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIAT 556
                I+  +    + ++ S L    +  L     S P    +V L+G I+G I D    
Sbjct: 469 ALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--Q 525

Query: 557 SLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP------- 606
            LV   R+++  G   E +  S  +               +Y+ +  GR+ RP       
Sbjct: 526 KLVNTFRIMRRAGYINEFVSISTNLSDR-----------CVYISSDGGRLCRPYIIVKKQ 574

Query: 607 ---VMN----------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELS 646
              V N                L  G +E++   E+   D  I + E      TTH E+ 
Sbjct: 575 KPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEE--NDCSIALYEHTINKDTTHLEIE 632

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  
Sbjct: 633 PFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMV 692

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +    + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+
Sbjct: 693 KTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 752

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K
Sbjct: 753 R----YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK 796

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
                LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +
Sbjct: 797 ---QVLVNKSMPTVTQTPLEGSNVPQQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLI 853

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 +  R  R P +GDKF+SR GQKG+C +  P ED+PF D+G+ PDI+ NPHGFPS
Sbjct: 854 K-----MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPS 908

Query: 945 RMTIGFL 951
           RMT+G L
Sbjct: 909 RMTVGKL 915



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   
Sbjct: 949  IRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPT 1008

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1009 EGRSRDGGLRLGEM--ERDCLIGY 1030


>gi|118576748|ref|YP_876491.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit
           [Cenarchaeum symbiosum A]
 gi|118195269|gb|ABK78187.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit
           [Cenarchaeum symbiosum A]
          Length = 1115

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 250/953 (26%), Positives = 405/953 (42%), Gaps = 130/953 (13%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  L+ GL   +++   IE E      K+ + K  + +P++      I +    P
Sbjct: 25  HLNSFDEFLERGLQSIIDEQGQIEIENAEYPYKIQLGKVKLQKPRMMELDGSITY--ITP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     YS P  +  +   DGK   +    +G +P M+KS  C L NL   +LIE+G
Sbjct: 83  AEGRLRNVSYSAPVMMEASVVEDGKTLESKFVHIGDIPTMIKSSACVLHNLPDQKLIEQG 142

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN---RGLLFSDLGVYIRSV-- 246
           E P++ GGYFI+ G E++V  L +   N  I  K     N   +  ++S +  Y   +  
Sbjct: 143 EDPNDPGGYFIINGSERVVVGLEDLSYNKIIVDKETVGGNPVYKAKVYSSIVGYRAKLEL 202

Query: 247 --KRDESATNNV------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE---------GI 289
             K D      +      +  VT   A  + S R+      +   +  E          +
Sbjct: 203 IMKNDGLIVVRIPGSPVDIPVVTLMKALGLESDREIASSASLNDDIQNELEGSFEKAGEV 262

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            T  D+ V+  +     +  +     +++  + +L   +LPHL    ++  +K   L   
Sbjct: 263 KTSKDAIVYISKRIAPGMLEEF----QIKRAETLLDWSLLPHLGKHPENRKEKAQFLGEA 318

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
           TCKL  +    +  D +D    + I   G +   L +              E+SG    +
Sbjct: 319 TCKLLELKLVWIPADDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGI 378

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
               + AA R   +   + N +ATGN   G+    QL+         +  N +  +SH R
Sbjct: 379 HA--VAAAIRPGIVTDKLNNAIATGNWGRGRVGVTQLL---------DRTNYLSTISHLR 427

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            V +    +   + E R L    +G ICP  TP+G+ CGL+ +L  +  IS ++PS+   
Sbjct: 428 RV-QSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSAIISVHVPSQ--- 483

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
           +I   L  +G +  T   +        + +DGR++GY  D     L   LR L+    KI
Sbjct: 484 EITEKLFDMGTVHFTDAKEDARATGTRIFVDGRLIGYYKD--GGGLADSLRDLR-RSSKI 540

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN------------------ 614
              + I + +  E G      LY+    GR+LRP++ +  G                   
Sbjct: 541 HPHVSISFNRPAEDGATRR--LYVNCSAGRVLRPMIIIKDGKPLLTQDLLDKISSKLLSW 598

Query: 615 --------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
                   IE I   E+    + +  KEA     TH E+  +  L   A++IP P+ NQS
Sbjct: 599 NDLLRMGVIELIDANEEENCYVTLDEKEAKG--HTHLEIFPSAILGAGASIIPYPEHNQS 656

Query: 667 PRNMYQCQMGKQTMG--TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           PRN Y+  M KQ++G  TP +N       + + +  P +P         L +++ P G N
Sbjct: 657 PRNTYESAMAKQSLGFSTPMMNT--STYVRQHFMLYPQTPIVNTRAMGLLGLEDRPAGQN 714

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
            +VAV+ + GY++EDA++L+KSS +RG A    ++    E +    Y G       + G+
Sbjct: 715 CVVAVLPFDGYNIEDAIVLSKSSVDRGLARTFFYRIYDAEAK---QYPGGMRDNFEIPGA 771

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA------K 838
               + + G   Y+ L                D    +    LG D L+   +      +
Sbjct: 772 EDNIRGYKGEKSYRLLED--------------DGVIASESTVLGGDILIGKTSPPRFMEE 817

Query: 839 LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRN 898
             E +P   Y +++    +  R S  E   V+ V M+    EGG +      I  R  R 
Sbjct: 818 YKEFEPSGPYRRDTS---IGVRPS--ETGVVDTVVMTQS-NEGGKMYK----IRVRDMRV 867

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P +GDKFA+R GQKG+  +    EDLP+T  G+ PD++ NPH FPSRMT+G  
Sbjct: 868 PEIGDKFAARHGQKGVLGILAKNEDLPYTAEGVTPDVLINPHAFPSRMTVGMF 920



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +G+ Y G E MY G  G     ++F GVV+YQ+L HMV+DK   +
Sbjct: 956  AGFKYSGKEIMYDGRTGKAFPVEVFIGVVYYQKLHHMVADKIHAR 1000


>gi|125843259|ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
           [Danio rerio]
          Length = 1130

 Score =  259 bits (662), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 250/912 (27%), Positives = 384/912 (42%), Gaps = 159/912 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TP +  + 
Sbjct: 97  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKL 156

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++  D    +G  + S 
Sbjct: 157 NECPLDPGGYFIVKGQEKV------------ILIQEQLSKNRIIVDQDRKGTVGASVTSS 204

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSM-----------------CL 277
             ++ +  N++  V  G  RF   H             K+M                  +
Sbjct: 205 THEKKSRTNMI--VKQG--RFYLKHNTLSEDAPIAIIFKAMGVESDQEIVQMIGTEEHVM 260

Query: 278 LGMMQSLHE---EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD- 333
                SL E     I TQ  +  + G   + +  +      ++E    +L + IL H+  
Sbjct: 261 AAFAPSLEECQKAQIFTQTQALRYIGNKVRRQRMWGGPKKTKMEEARELLASTILTHVPV 320

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS 386
              ++  K + L+ M  ++  + QG  ++D  D    + +   G L    +  L KK  S
Sbjct: 321 KEFNFRAKCIYLAVMVRRVI-LAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNS 379

Query: 387 GTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
               +  +          D+    R   I + M N ++TGN S  +      M   G   
Sbjct: 380 ELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG--- 432

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL--- 492
           + + ++R+ ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL   
Sbjct: 433 VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 492

Query: 493 ---LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
              + H+TT+ +    I       +  V +  G     P +        +V L+G I+G 
Sbjct: 493 LALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPTV-------FLVFLNGNILGV 545

Query: 550 ILDQIATSLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           I D     LV   R+++  G   E +  S  +               +Y+ +  GR+ RP
Sbjct: 546 IRDH--QKLVYTFRLMRRAGFINEFVSISTNLTDR-----------CVYISSDGGRLCRP 592

Query: 607 VMNLAAG-------NIEWIGTFEQVFMDICITMKEAYPGI------------------TT 641
            + +  G       +IE +    + F D        Y  +                  TT
Sbjct: 593 YIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTT 652

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P
Sbjct: 653 HLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYP 712

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P  +    + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+ 
Sbjct: 713 QRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNA 772

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
              L      Y  +T +  V G M+ A+    +      RH + D        G     +
Sbjct: 773 KCTLRR----YTNQT-FDKVMGPMLDAETRKPI-----WRHSILDA------DGICSPGE 816

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFT 879
            +E+K     LV        + P+    +  + +Y  V   Y G  +  +E V +SS   
Sbjct: 817 KVENK---QVLVNKSMPTVTQTPLEGSAQPGQPQYREVPVSYKGATDSYIEKVMISSNAE 873

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           +   V      I  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NP
Sbjct: 874 DAFLVK-----ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP 928

Query: 940 HGFPSRMTIGFL 951
           HG+PSRMT+G L
Sbjct: 929 HGYPSRMTVGKL 940



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 977  GYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1036

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1037 SRDGGLRLGEM--ERDCLIGY 1055


>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
 gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6)
           [Pyrococcus abyssi GE5]
 gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi
           GE5]
          Length = 1117

 Score =  258 bits (660), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 253/963 (26%), Positives = 408/963 (42%), Gaps = 154/963 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +D GL   V++   I+ +I    +K   ++    E + P G         YP
Sbjct: 31  HLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +PIMLKSK C L  L+  +L + G
Sbjct: 87  MDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQLG 146

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK-RNAWKNRGLLFSDLGVYIRSVKRDE 250
           E P + GGYFI+ G E+++  + +   N  +  K     K    +FS    Y R++   E
Sbjct: 147 EDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGY-RALVTVE 205

Query: 251 SATNNVLH-----------FVTNGSARFMFSHRKSMCLLG--------MMQSLHEEG-IH 290
              + +L+           FV    A  +   +  +  +G        +  +L +   I 
Sbjct: 206 RKKDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVDAVGNDPEVQQILFDNLEDASDIT 265

Query: 291 TQHDSKVFFGQIFK--EKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSH 344
           TQ ++  + G++    +  +Y L+        +Y++ N +LPH+    +D   K   L  
Sbjct: 266 TQQEALEYIGKLVAPGQAREYRLKR------AEYVIDNNLLPHIGVSPEDRIRKAYYLGM 319

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK---------EKSG 387
           M  K+  +  G    D +D    + +   G L        + QL+K          ++ G
Sbjct: 320 MALKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRG 379

Query: 388 TSAVLKESD--IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
              V       I  + R   +   + + LATG    G+    QL+  + +V         
Sbjct: 380 EKYVFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVST------- 432

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
             +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+  
Sbjct: 433 --LSHLRRVT-SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTA 489

Query: 506 IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
           +P +   ++   L+SLG++P+  V +  PE    V L+G I+G I D    +LV +++  
Sbjct: 490 VPEE---EVKEYLMSLGIVPIE-VRRPSPE-LWRVYLNGVIIGTIED--GKALVERIKKD 542

Query: 566 KIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VMNL 610
           +  G KI   + + Y +   +       +Y+ +  GR+ RP               V  +
Sbjct: 543 RRSG-KISDIINVAYYEDVRE-------VYVNSDDGRVRRPLIIVENGKPKLTKEHVQAI 594

Query: 611 AAGNIEWIGTFEQVFMDICITMKE--AYPGI--------TTHRELSKTDFLSNLANLIPM 660
             G ++W        ++     +E  AY  +         TH EL     L   A+LIP 
Sbjct: 595 KEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPY 654

Query: 661 PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP 720
           P+ N +PRN Y   M KQ++G    N+R +   + + L  P  P         +  ++ P
Sbjct: 655 PEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRP 714

Query: 721 MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG 780
            G N +VAV++Y GY+MEDA+I+NK+S ERG A    F++          Y   E  Y G
Sbjct: 715 AGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRT----------YEAEEKKYLG 764

Query: 781 VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLN 840
                                   +DK++      R    +     L  DGL++  +K+ 
Sbjct: 765 GQ----------------------TDKFEIPSPTVRGYRGEKYYRHLDEDGLIFPESKVE 802

Query: 841 ERDPMYSYWKESENRYVTCRYSG------KEEMCVEVVRMSSG------FTEGGSVTPNC 888
            +D +    + S  R++  R  G      + E  V V     G       TE G  T   
Sbjct: 803 GKDVLIG--RTSPPRFLEERGLGAVSLQERRETSVAVRPSERGVVDKVIITETGDGT-KL 859

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT+
Sbjct: 860 VKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTV 919

Query: 949 GFL 951
           G L
Sbjct: 920 GQL 922



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G   +A IF GV++YQRL HMV+DK   +
Sbjct: 959  GFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHAR 1002


>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis
           KIN4/I]
 gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
           KIN4/I]
          Length = 1132

 Score =  258 bits (660), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 264/974 (27%), Positives = 415/974 (42%), Gaps = 155/974 (15%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           L +  + S++  + E +   +E++   E E +    KL  +K    EP +     G    
Sbjct: 26  LVSQQLESYNKFVTETMQKLIEELG--EVEPFESGYKLEFIKIRYGEPIIKEKSGGTR-- 81

Query: 128 KYYPTEARQTRSVYSGPFNVTVAW-SWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
              PTE R     Y+ P  V +   +  G+       E+G +P+M++S    L   +P +
Sbjct: 82  PVTPTECRIRDLTYAAPIYVYMRLRNPKGEIKDEGWVEIGMMPVMVRSILDPLSKKSPEE 141

Query: 187 LIERGEHPDEWGGYFIVGGHEKLV----RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           L+E GE P + GGYFIV G EK++     L +N         +        +L + LG  
Sbjct: 142 LVEAGEDPRDPGGYFIVDGSEKVIVTQEDLALNKVLVDKGGPQSTVTHTAKVLSTTLGYR 201

Query: 243 IRS-VKRDESATNNVLH--------FVTNGSARFMFSHRKSMCLLGMMQSLHEE------ 287
           ++  V+R +  T + +          V    A  + S +    L+     + +E      
Sbjct: 202 VQVIVERQKDGTLHAIFPPLPGKIPLVVLIRALGIESDKDITSLVSFDPEVQQELLPSIE 261

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFL 340
               + T  D+  F G      +  D R    +E    +L N +LPHL    +D   K +
Sbjct: 262 QAASVPTVDDALDFIGARIAIGMPRDKR----IERAKQVLDNNLLPHLGKRPEDRIKKAI 317

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG---------TSAV 391
            L+HM  KL  V     + D +D    + +   G +   L +    G           +V
Sbjct: 318 FLAHMARKLLEVYLEKREPDDKDHYANRRLKLAGDMLAALFRTHLRGLLNDVGYQLERSV 377

Query: 392 LKESD---IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
           LK  +   +    R++ +   +   LATGN    +    QL+         +  N +  +
Sbjct: 378 LKGEERLKLRILIRSNYLTDKVRQALATGNWVGNRTGVSQLL---------DRTNWLSTL 428

Query: 449 SHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
           SH R V      +     E R+L    WG ICP  TP+G   GL+ +L  +  IS  +P 
Sbjct: 429 SHLRRVV-SPLARNQPHYEARELHMTQWGRICPFETPEGPNIGLVKNLALSAHISVGVPE 487

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSI------PEQAL---MVMLDGRIVGYILDQIATSLV 559
           +   ++  VL  LG++ +  V++ +      PE+A+    V L+GR VGY  D  A  L 
Sbjct: 488 E---EVEKVLDELGVIRVEEVLEKVKNDEPVPEEAISGARVFLNGRPVGYYKD--AHELA 542

Query: 560 PKLRMLKIVGEKIPKSLEI-VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNI--- 615
            K+R L+  G K+   + + VY    E   G    +Y+ T PGR++RPV  +  G +   
Sbjct: 543 QKIRQLRRQG-KLHYEVSVGVY----ENDDGTIKEVYINTDPGRVMRPVFVVENGELKLK 597

Query: 616 ----------EWIGTFEQVFMD---------------ICITMKEAYPGITTHRELSKTDF 650
                     EW  TF+ + M                I I  ++  P   TH E+     
Sbjct: 598 PEHVEKVKKGEW--TFKDLLMRGIVELLDADEEENALIAIEPEDITPK-HTHMEIWVPAV 654

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
              +A+ IP  + NQSPRN YQ  M KQ +G    N+  +   + Y L  P  P  +  H
Sbjct: 655 FGVVASTIPYLEHNQSPRNSYQSAMAKQALGLYAANFMLRTDTRGYLLHYPEKPLAQTKH 714

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + +  +  P G NA+ A++SYTGY++EDA+I+N+SS +RGF      ++ F+ L     
Sbjct: 715 LEIIGYNKRPAGQNAVAAILSYTGYNIEDAIIMNQSSIDRGF-----MRATFMRL----- 764

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
           Y   E  Y G     ++          QRL  M            R+P  KA E KL  D
Sbjct: 765 YQTEEQKYPGGAEDKIEKP-----KPDQRLVGM------------REP--KAYE-KLDED 804

Query: 831 GLV-----YVGAKL---NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
           G+V      VG  +       P ++     E + +    + + +  V V     G  +  
Sbjct: 805 GIVEPETYVVGGDVLIGKSSPPRFT----EEYKEMGILETRRRDASVAVRHGEEGVVDTV 860

Query: 883 SVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
            +T N        +  R  R P +GDKFASR GQKG+  +  P  D+P+++ GLVPDI+ 
Sbjct: 861 ILTENIDGIKMVKVRVRSLRIPEIGDKFASRHGQKGVIGMVLPHYDMPYSEFGLVPDIIL 920

Query: 938 NPHGFPSRMTIGFL 951
           NPH FPSRMT+G L
Sbjct: 921 NPHAFPSRMTLGQL 934



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 30/49 (61%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            I +E G+   GTE M+ G  G M+   +F GVV YQRL HMVSDK   +
Sbjct: 966  ILVERGFPPDGTEVMFDGRTGEMIARPVFIGVVFYQRLYHMVSDKIHAR 1014


>gi|407461849|ref|YP_006773166.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
           koreensis AR1]
 gi|407045471|gb|AFS80224.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
           koreensis AR1]
          Length = 1115

 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 256/964 (26%), Positives = 416/964 (43%), Gaps = 152/964 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  L+ GL   + ++  I+ E      K+ + K  + +P++    +        P
Sbjct: 25  HLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMME--LDGSITHITP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     YS P  +  +   DGK   +    +G VP+M KS  C L N +  +L+E G
Sbjct: 83  AEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVEHG 142

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN---RGLLFSDLGVYIRSV-- 246
           E P++ GGYFI+ G E+++  L +   N  I  +     N   +  ++S +  Y   +  
Sbjct: 143 EDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVGGNIVHKAKVYSSIVGYRAKLEL 202

Query: 247 --KRDESATNNV------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE---------GI 289
             K D      +      +  VT   A  + S R+    + ++  L +E          +
Sbjct: 203 VMKSDGLIVARIPGSPVDIPVVTLMRALGLESDREIAAAVSLVDELQDELEGSFEKAGDV 262

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            T  D+ V+  +     +  +     +++  + +L   +LPHL    ++  +K   L   
Sbjct: 263 PTAKDAIVYISKRIAPGMLEEF----QIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEA 318

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
            CKL  +  G ++ D +D    + I   G +   L +              E+SG    +
Sbjct: 319 ACKLLELKLGWIKPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGI 378

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
             + + AA R   I   + N +ATGN   G+    QL+         +  N +  +SH R
Sbjct: 379 --NAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLL---------DRTNYLSTISHLR 427

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            + +    +   + E R L    +G ICP  TP+G+ CGL+ +L  +  IS  +PS+   
Sbjct: 428 RI-QSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSE--- 483

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD--QIATSLVPKLRMLKI--- 567
           +I   L  LG +      + + +    + +DG+++GY  D  Q+A SL    R  KI   
Sbjct: 484 EIVEKLYDLGTVHFFDAKEDLKKDGTRIFVDGKLIGYYKDGEQLAESLRDLRRNSKIHPH 543

Query: 568 VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAA 612
           VG    KS EI          G    LY+    GR+LRP++                ++ 
Sbjct: 544 VGVSFHKS-EI---------EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISK 593

Query: 613 GNIEW-----IGTFEQVFM----DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
             I W     +G  E +      +  +T+ E      TH E+     L   A++IP P+ 
Sbjct: 594 KLISWTDLLRMGVLEMIDANEEENCYVTLDEKDTKKHTHLEVFPPAILGAGASIIPYPEH 653

Query: 664 NQSPRNMYQCQMGKQTMG--TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           NQSPRN Y+  M KQ++G  TP +N       + + +  P  P         L +++ P 
Sbjct: 654 NQSPRNTYESAMAKQSLGFSTPMMNT--STYVRQHFMLYPQVPIVNTKAMKLLGLEDRPA 711

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G N +VAV+ + GY++EDA++L+K+S +RG       ++ F      Y  Y  E      
Sbjct: 712 GQNCVVAVLPFDGYNIEDAIVLSKASVDRGLG-----RTFF------YRIYDAEA--KQY 758

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
            G M  A   F + + +            + Y G + A + LE+    DG+V   A +  
Sbjct: 759 PGGMRDA---FEIPNAED---------NIRGYKG-ERAYRLLEE----DGVVAAEAPVKG 801

Query: 842 RD--------PMY-SYWKESEN-----RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            D        P +   ++E E+     R  +      E   V+ V M+    EGG +   
Sbjct: 802 GDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQS-NEGGKMYK- 859

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
              I  R  R P +GDKFASR GQKGI  +   AEDLP+T SG+ PD++ NPH FPSRMT
Sbjct: 860 ---IRARDMRIPEIGDKFASRHGQKGILGILAKAEDLPYTASGMSPDVLINPHAFPSRMT 916

Query: 948 IGFL 951
           +G +
Sbjct: 917 VGMM 920



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ Y G E MY G  G     ++F GVV+YQ+L HMV+DK   +
Sbjct: 957  GFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHAR 1000


>gi|395538371|ref|XP_003771156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
           [Sarcophilus harrisii]
          Length = 1174

 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 393/903 (43%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 140 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 199

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 200 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 247

Query: 247 KRDESATNNV-----------------LHFVTNGSARFMFSHRKSMCLLGM--------- 280
             ++ +  N+                 +  V    A  + S ++ + ++G          
Sbjct: 248 THEKKSRTNIAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 307

Query: 281 --MQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 308 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKMEEARELLASTILTHVPVKEF 367

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 368 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 427

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 428 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 480

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 481 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 540

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 541 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 597

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 598 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 646

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 647 VTDKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 705

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 706 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 765

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 766 IELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 822

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 823 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 866

Query: 831 GLVYVGAKLNERDPM--YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+   S  ++ + + V   Y G  +  +E V +SS   +   +    
Sbjct: 867 VLVNKSMPTVTQIPLEGSSVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 923

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 924 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 981

Query: 949 GFL 951
           G L
Sbjct: 982 GKL 984



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 1021 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1080

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1081 SRDGGLRLGEM--ERDCLIGY 1099


>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
 gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
          Length = 1117

 Score =  258 bits (658), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 250/964 (25%), Positives = 413/964 (42%), Gaps = 156/964 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ GL   V +   I+ +I    +K   ++    E + P G         YP
Sbjct: 31  HLDSYNAFIERGLQEVVNEFGGIKPDIPDFEVKFGKIRVGQPEFQEPHG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 87  MDARIRNLTYSAPLYLEMIPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDEELIKLG 146

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR--GLLFSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++++  + R    +FS    Y R++   
Sbjct: 147 EDPKDPGGYFIINGSERVI-VSIEDIAPNRTLVEKDERQERYVAKVFSYRHGY-RALVTV 204

Query: 250 ESATNNVLH-----------FVTNGSARFMFSHRKSMCLLG--------MMQSLHEEG-I 289
           E   + +L+           FV    A  +   R  +  +G        +  +L +   I
Sbjct: 205 ERKKDGILYVGIPNVPKPIKFVYVMRALGLERDRDIVDAVGNDPEVQQILFDNLEDASDI 264

Query: 290 HTQHDSKVFFGQIFK--EKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLS 343
            TQ ++  + G++    +  +Y L+        +Y++ N +LPH+    +D   K   L 
Sbjct: 265 TTQQEALEYIGKLVAPGQAREYRLKR------AEYVIDNNLLPHMGVNPEDRIRKAYYLG 318

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLKE 394
            M  K+  +  G    D +D    + +   G L        + QL+K  +   T    ++
Sbjct: 319 MMALKVIELSLGRRDEDDKDHYANKRLRLAGDLLKDLFRVAFGQLVKDIQYQMTKTYQRK 378

Query: 395 SDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            + Y           + R   +   + + LATG    G+    QL+  + +V        
Sbjct: 379 GEKYTFGNIHRFIRNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVST------ 432

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+ 
Sbjct: 433 ---LSHLRRVT-SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITT 488

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
            +P +   ++   L+SLG++P+  V +  PE    V L+G ++G I D    +L  ++R 
Sbjct: 489 AVPEE---EVKEYLMSLGIVPIE-VRRPSPE-LWRVYLNGVLIGTIED--GKALAQRIRQ 541

Query: 565 LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VMN 609
            +  G KI   + + Y +  ++       +Y+ +  GR+ RP               V  
Sbjct: 542 DRRNG-KISDVINVAYYEDVKE-------VYVNSDDGRVRRPLIIVENGKPKLTKEHVQA 593

Query: 610 LAAGNIEWIGTFEQVFMDICITMKE--AYPGI--------TTHRELSKTDFLSNLANLIP 659
           +  G ++W        ++     +E  AY  +         TH EL     L   A+L+P
Sbjct: 594 VKEGRLKWSDLIRMGVIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVP 653

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
            P+ N +PRN Y   M KQ++G    N+R +   + + L  P  P         +  ++ 
Sbjct: 654 YPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVDSRIMKAVGYEDR 713

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P G N IVAV++Y GY+MEDA+I+NK+S ERG A    F++          Y   E  Y 
Sbjct: 714 PAGQNFIVAVLAYQGYNMEDAIIINKASIERGLARSTFFRT----------YEAEEKKYL 763

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
           G                        +DK++      R    +     L  DGL++  +++
Sbjct: 764 GGQ----------------------TDKFEIPAPTVRGYRGEKYYRNLDEDGLIFPESRV 801

Query: 840 NERDPMYSYWKESENRYVTCRYSG------KEEMCVEVVRMSSG------FTEGGSVTPN 887
             +D +    + S  R++  R  G      + E  V V     G       TE G  T  
Sbjct: 802 EGKDVLIG--RTSPPRFLEERGLGSVALQERRETSVAVRPSEKGVVDKVIITETGDGT-K 858

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
              +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT
Sbjct: 859 LVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMT 918

Query: 948 IGFL 951
           +G L
Sbjct: 919 VGQL 922



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 959  GFKHTGREIMYDGITGRRLEADIFVGVIYYQRLHHMVADKIHAR 1002


>gi|407464206|ref|YP_006775088.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
           sp. AR2]
 gi|407047394|gb|AFS82146.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
           sp. AR2]
          Length = 1115

 Score =  258 bits (658), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 248/959 (25%), Positives = 413/959 (43%), Gaps = 142/959 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  L+ GL   + ++  I+ E      K+ + K  + +P++    +        P
Sbjct: 25  HLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMME--LDGSITHITP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     YS P  +  +   DGK   +    +G VP+M KS  C L N +  +LIE G
Sbjct: 83  AEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSSQKLIEHG 142

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN---RGLLFSDLGVYIRSV-- 246
           E P++ GGYFI+ G E+++  L +   N  I  +     N   +  ++S +  Y   +  
Sbjct: 143 EDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVGGNIVFKAKVYSSIVGYRAKLEL 202

Query: 247 --KRDESATNNV------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE---------GI 289
             K D      +      +  VT   A  + S R+   ++ ++  + +E          +
Sbjct: 203 VMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIASVVSLVDDIQDELEGSFEKAGDV 262

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            T  D+ V+  +     +  +     +++  + +L   +LPHL    ++  +K   L   
Sbjct: 263 PTSKDAIVYISKRIAPGMLEEF----QIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEA 318

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
            CKL  +  G +  D +D    + I   G +   L +              E+SG    +
Sbjct: 319 ACKLLELKLGWITPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGI 378

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
             + + AA R   I   + N +ATGN   G+    QL+         +  N +  +SH R
Sbjct: 379 --NAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLL---------DRTNYLSTISHLR 427

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            + +    +   + E R L    +G ICP  TP+G+ CGL+ +L  +  IS  +P++   
Sbjct: 428 RI-QSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPNE--- 483

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
           +I   L  LG +      + + +    V +DGR++GY  D   + L   LR L+    KI
Sbjct: 484 EIVEKLYDLGTVHFFDAKEDLKKDGTRVFVDGRLIGYYKD--GSELAESLRELR-RNSKI 540

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAAGNIEW 617
              + + + K   +G      LY+    GR+LRP++                ++   + W
Sbjct: 541 HPHVGVSFHKSEIEGSTRR--LYVNCNAGRVLRPLIIIKDNKPLLTSELLDKISKKLLSW 598

Query: 618 -----IGTFEQVFM----DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
                +G  E +      +  +T+ E      TH E+     L   A++IP P+ NQSPR
Sbjct: 599 TDLLRMGVLEMIDANEEENCYVTLDEKDAKKHTHLEVFPPAILGAGASIIPYPEHNQSPR 658

Query: 669 NMYQCQMGKQTMG--TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           N Y+  M KQ++G  TP +N       + + +  P  P         L +++ P G N I
Sbjct: 659 NTYESAMAKQSLGFSTPMMNT--STYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCI 716

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAV+ + GY++EDA++L+K+S +RG      F+           Y      Y    G M 
Sbjct: 717 VAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRI----------YDAEAKQYP---GGMR 763

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD--- 843
            +   F + + +            + Y G + A + LED    DG+V   A +   D   
Sbjct: 764 DS---FEIPNAED---------NIRGYKG-ERAYRLLED----DGVVASEAPVKGGDILI 806

Query: 844 -----PMY-SYWKESEN-----RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
                P +   ++E E+     R  +      E   ++ V M+    EGG +      I 
Sbjct: 807 GKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVIDTVVMTQS-NEGGKMYK----IR 861

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKFASR GQKG+  +   AEDLP+T SG+ PD++ NPH FPSRMT+G +
Sbjct: 862 ARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTASGMSPDVLINPHAFPSRMTVGMM 920



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ Y G ETMY G  G      +F GVV+YQ+L HMV+DK   +
Sbjct: 957  GFEYSGKETMYDGRTGKSFPVDVFIGVVYYQKLHHMVADKIHAR 1000


>gi|401623550|gb|EJS41646.1| ret1p [Saccharomyces arboricola H-6]
          Length = 1149

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 260/977 (26%), Positives = 413/977 (42%), Gaps = 180/977 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   E Y K + + + K + S  K    P   
Sbjct: 61  HLDSFNYFVDTDLKKIIKANQLILSDVDP---EFYLKYVDIRVGKKSSSSTKDYLTP--- 114

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L +   
Sbjct: 115 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
           +++ +  E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    +
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 225

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N  ++   N  A  +            S  + M L+    S +++    
Sbjct: 226 ERKSKTYVITKNGKIYLKHNSIAEEIPIAVVLKAGGIVSDLEIMQLVCGNDSSYQDIFAV 285

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 286 NLEESSKLDIYTQQQALEYIGAKVKTMRRQKLSILQEGIE----AIATTVIAHLTVEALD 341

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K 
Sbjct: 342 FREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKL 401

Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+ +    + A        ++I S +   ++TGN S  +      M+ +G   +
Sbjct: 402 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 454

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 455 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 514

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  +      LG+  +T +  +       V L+G +VG I  +
Sbjct: 515 ALMTHITTDDEEEPIKKLCYV------LGVEDITLIDSASLHLNYGVYLNGTLVGSI--R 566

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
             T  V + R L+  G    K  E + +      M ++    + T  GR+ RP++ ++ G
Sbjct: 567 FPTKFVTQFRRLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSGG 618

Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                      +E++   E+    I +  K+  P +T H E+  
Sbjct: 619 QSRVKDTHLRQLLEGKLDFDDFLKLGLVEYLDVNEENDSYIALYEKDIIPSMT-HLEIEP 677

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 678 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 737

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+ 
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+                 R+       WQ +               L
Sbjct: 798 YANH--TQDIIGGM-----------------RVDENGEPIWQHQ--------------SL 824

Query: 828 GPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVV 872
           GPDGL  VG K       +N+  P  S    + N        R     Y G E   ++ V
Sbjct: 825 GPDGLGEVGMKVKSGQIYINKSVPTNSTDAPNPNNVNVQTQYREAPVIYRGPEPSHIDQV 884

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            MS    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+V
Sbjct: 885 MMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIV 939

Query: 933 PDIVFNPHGFPSRMTIG 949
           PDI+ NPHGFPSRMT+G
Sbjct: 940 PDIIMNPHGFPSRMTVG 956



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 990  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1093 DVCDKCGLMGY 1103


>gi|242006406|ref|XP_002424041.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Pediculus humanus corporis]
 gi|212507347|gb|EEB11303.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Pediculus humanus corporis]
          Length = 1137

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 244/907 (26%), Positives = 396/907 (43%), Gaps = 146/907 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  VT+ ++   +        +GR+PIML+S  C L      +L + 
Sbjct: 100 PQECRLRDMTYSAPITVTIEYTRGNERIIKKDLIIGRIPIMLQSANCVLYGKDEYELSKL 159

Query: 191 GEHPDEWGGYFIVGGHEKLV----RLLIN------NRRNHPIA----------------I 224
            E P + GGYFIV G E+++    +LL N      + + +P A                I
Sbjct: 160 NECPLDPGGYFIVKGQERVILIREQLLKNSLVVEKDSKGNPCAHVMSSTHEKKSKTNIII 219

Query: 225 KRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSL 284
           K++ +  R   FSD  + +  + +     +++  F++ G  +    H K   L+  M+  
Sbjct: 220 KKDKFYLRHNAFSD-DIPLAVIYKGFGVESDIEFFMSVGIEQEY--HEK---LIPSMEEC 273

Query: 285 HEEGIHTQHDSKVFFGQIFKEKLQYDL-----RHLNEVEICDYMLTNCILPHLDDYWDKF 339
           H+  I TQ  +  + G   K K++  L     +  N V+    +L N IL H+D     F
Sbjct: 274 HKLNICTQTQALRYIGN--KTKVKRSLPGSGGKPKNVVDDAGDILANTILAHVDVL--DF 329

Query: 340 LCLSHMTCKLFHVVQGMVQLDSED---------------------SIMLQEIMTGGSLYL 378
            C+   T  L  +V+ ++Q +++                       ++ ++ +   +L L
Sbjct: 330 RCMCEKTQYLGLMVRRILQAETDPRFYTDLDHYGNKRLELAGAMLGLLFEDFLKRYNLEL 389

Query: 379 QLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
           +++  +K        + DI    R   I +  +N ++TGN +  +      M   G   +
Sbjct: 390 KMIA-DKMIPKIKAAQFDIVKHLRQDFITNGFSNAISTGNWTIKRFR----MHTQG---V 441

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            + ++R+ Y+S F  + R  S+F++ R  S PR L    WG +CP  TP+G  CGL+ +L
Sbjct: 442 TQVLSRLSYISAFGMMTRVNSHFEKTRKVSGPRSLHATQWGMLCPSDTPEGEACGLVKNL 501

Query: 497 TTNCQISEY---IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
              C IS     +P K +AQ+  ++  + M     + Q +     MV L+G ++G   + 
Sbjct: 502 ALMCHISTLSSELPIKQIAQLCGIIPPMRM----NMEQILAPDTFMVFLNGSLLGITYE- 556

Query: 554 IATSLVPKLRMLKIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP------ 606
               L  KLR ++  G+  P  S+ +  L R          +Y+F+  GR+ RP      
Sbjct: 557 -PKKLCKKLRKIRRSGKLNPFVSISLHALHRT---------VYIFSDSGRLCRPYIIIEN 606

Query: 607 --------------------VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
                               +  L  G IE++   E+    I +  K+  P   TH E++
Sbjct: 607 GVPLITKSDLNDLERKFKKFIDFLDDGVIEYMDVNEENDSLIALYEKDITPK-HTHLEIA 665

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L   A++IP P  NQSPRN YQC MGKQ MG    N   +    LY +     P  
Sbjct: 666 PFTLLGVCASIIPYPHNNQSPRNTYQCAMGKQAMGAIGYNQENRIDTLLYNMVYTQKPMV 725

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
                  ++ D  P G NAIV V+SY+GYD+EDA+I+NK+S ERG+    +F++    L+
Sbjct: 726 ITKPMVMVNYDKLPAGQNAIVCVMSYSGYDIEDALIINKASLERGYGRCQVFRNTKCVLK 785

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                      Y+      +Q  +          +H V D     D  G  P  K L  +
Sbjct: 786 R----------YADGTSDRIQGPLVDAETRKPLWKHGVLD----TDGIGA-PGEKILNRQ 830

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRYVT--CRYSGKEEMCVEVVRMSSGFTEGGSV 884
                 V +   +  R    +     E  Y+     Y G E   ++ V +S+   +   +
Sbjct: 831 ------VLINKSVPSRSNTSNVPIFGERDYIDTPVDYKGLEHSYIDKVLISTNSDDDSLI 884

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 I  R  R P +GDKF+SR GQKG+  +    E++PF +SG+ PD++ NPHGFPS
Sbjct: 885 K-----IKLRQTRIPEIGDKFSSRHGQKGVVGLIVEQENMPFNESGICPDVIMNPHGFPS 939

Query: 945 RMTIGFL 951
           RMT+G L
Sbjct: 940 RMTVGKL 946



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    + +     +++ +NY G + +YSG+ G  M+  ++ G V YQR
Sbjct: 955  GVVTGKHHYGTAFGGSTVSEVQEELVKNKFNYEGKDILYSGITGEPMEVYVYSGPVFYQR 1014

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES 852
            L+HMV DK   +    R    +   +    DG + +G    ERD + +Y   S
Sbjct: 1015 LKHMVQDKIHARARGPRAVLTRQPTEGRAADGGLRLGEM--ERDCLIAYGASS 1065


>gi|340344216|ref|ZP_08667348.1| DNA-directed RNA polymerase subunit beta [Candidatus
           Nitrosoarchaeum koreensis MY1]
 gi|339519357|gb|EGP93080.1| DNA-directed RNA polymerase subunit beta [Candidatus
           Nitrosoarchaeum koreensis MY1]
          Length = 1115

 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 247/959 (25%), Positives = 411/959 (42%), Gaps = 142/959 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  L+ GL   + ++  IE E      K+ + K  + +P++    +        P
Sbjct: 25  HLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMME--LDGSITHITP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     YS P  +  +   DGK   +    +G VP+M KS  C L N +  +L+E G
Sbjct: 83  AEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVEHG 142

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN---RGLLFSDLGVYIRSV-- 246
           E P++ GGYFI+ G E+++  L +   N  I  + +   N   +  ++S +  Y   +  
Sbjct: 143 EDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRESVGGNTVFKAKVYSSIVGYRAKLEL 202

Query: 247 --KRDESATNNV------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE---------GI 289
             K D      +      +  VT   A  + S R+    + ++  +  E          +
Sbjct: 203 VMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLVDEIQNELEGSFEKAGDV 262

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            T  D+ V+  +     +  +     +++  + +L   +LPHL    ++  +K   L   
Sbjct: 263 PTAKDAIVYISKRIAPGMLEEF----QIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEA 318

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
            CKL  +  G +  D +D    + I   G +   L +              E+SG    +
Sbjct: 319 ACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGI 378

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
             + + AA R   I   + N +ATGN   G+    QL+         +  N +  +SH R
Sbjct: 379 --NAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLL---------DRTNYLSTISHLR 427

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            + +    +   + E R L    +G ICP  TP+G+ CGL+ +L  +  IS  +PS+   
Sbjct: 428 RI-QSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSE--- 483

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
           +I   L  LG +      + + +    + +DGR++GY  D     L   LR L+    KI
Sbjct: 484 EIVEKLYDLGTIHFFDAKEDVKKDGARIFVDGRLIGYYKD--GAELAESLRELR-RNSKI 540

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAAGNIEW 617
              + I + +   +G      LY+    GR+LRP++                ++   + W
Sbjct: 541 HPHVGISFHQSAIEGS--TKRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSW 598

Query: 618 -----IGTFEQVFMD----ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
                +G  E +  +      IT+ E      TH E+     L   A++IP P+ NQSPR
Sbjct: 599 TDLLRMGVLEMIDANEEENCYITLDEKDSKKHTHLEVFPPAILGAGASIIPYPEHNQSPR 658

Query: 669 NMYQCQMGKQTMG--TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           N Y+  M KQ++G  TP +N       + + +  P +P         L +++ P G N +
Sbjct: 659 NTYESAMAKQSLGFSTPMMNT--STYVRQHLMLYPQTPIVNTKAMKLLGLEDRPAGQNCV 716

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAV+ + GY++EDA++L++SS +RG      F+           Y      Y    G M 
Sbjct: 717 VAVLPFDGYNIEDAIVLSRSSVDRGLGRTFFFRI----------YDAEAKQYP---GGMR 763

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD--- 843
            A   F + + +            + Y G + A + LE+    DG+V   + ++  D   
Sbjct: 764 DA---FEIPNAED---------NIRGYKG-EKAYRLLEE----DGVVASESPVHGGDILI 806

Query: 844 -----PMY-SYWKESEN-----RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
                P +   ++E E+     R  +      E   V+ V M+    EGG +      I 
Sbjct: 807 GKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQS-NEGGKMYK----IR 861

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKFASR GQKG+  +   AEDLP+T  G+ PD++ NPH FPSRMT+G  
Sbjct: 862 VRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTADGISPDVLINPHAFPSRMTVGMF 920



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +G+ Y G ETMY G  G      +F GVV+YQ+L HMV+DK   +
Sbjct: 956  AGFKYSGKETMYDGRTGKSFPVDVFIGVVYYQKLHHMVADKIHAR 1000


>gi|68490742|ref|XP_710813.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|68490765|ref|XP_710802.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432047|gb|EAK91554.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432059|gb|EAK91565.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|238879996|gb|EEQ43634.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
           albicans WO-1]
          Length = 1157

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 259/995 (26%), Positives = 431/995 (43%), Gaps = 149/995 (14%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ S+++ +D  L       +L + D+ P 
Sbjct: 29  KKLTDE-INTAKDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDP- 86

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K L + +   + S+P       G+      P E R     YS P  V V ++  
Sbjct: 87  --EFYVKYLDIRVGHKSTSKP-------GVKEVILPPHECRLRDLTYSAPIYVDVEYTRG 137

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
            K       E+GR+P+ML+S +C L  ++ A + +  E P + GGYF+V G EK++ +  
Sbjct: 138 RKIIRHNDLEIGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQE 197

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDL--GVYIRSVKRDESATNNVLHFVTNG--------- 263
              +N  I     A + +G++ + +    + R  K      N+ ++   N          
Sbjct: 198 QLSKNRIIV---EADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVI 254

Query: 264 --SARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQY 309
              A  + S  + + L+    S +++             + TQ  +  + G+  K   + 
Sbjct: 255 ILKAAGIVSDLEILQLVCGSDSNYQDLFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRA 314

Query: 310 DLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
               L++++     +   I+ HL      + +K L ++ M  ++   +     +D  D +
Sbjct: 315 GAPKLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYV 374

Query: 366 MLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSA 421
             + +   G L    +  L KK  S   A + +  +    R S  ++ ++  + + N++ 
Sbjct: 375 GNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKV-LKKPSRTSEFDALLSINIHSNNITM 433

Query: 422 GKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQ 470
           G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S PR 
Sbjct: 434 GLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRA 490

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLT 527
           L+   +G +C   TP+G  CGL+ +L     I+   E  P K L       ++LG  P+ 
Sbjct: 491 LQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLC------IALGCEPIF 544

Query: 528 PVIQSI--PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
            +  +    +    V L+G ++G    +     V   R L+ VG K+   + I       
Sbjct: 545 ALDSATLHVDGNFGVYLNGTLIGTT--RFPVKFVHDFRHLRRVG-KVSAFISIYTNTH-- 599

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAG-------------NIEWIGTFEQVFM------ 626
                +  +++ T  GR+ RP++ +  G             N EW  +F+          
Sbjct: 600 -----HQAVHIATDGGRICRPLIIVENGKSKVTAEHLAKLINQEW--SFDDFLTHGLVEY 652

Query: 627 -------DICITMKE----AYPG-ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
                  D  I + E    A PG I TH E+     L  +A LIP P  NQSPRN YQC 
Sbjct: 653 LDVNEENDSLIALYEDDITANPGAIVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCA 712

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ +G    N   +    LY +  P  P  +    + ++ D  P G NA VAV+SY+G
Sbjct: 713 MGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSG 772

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YD+EDA++LNK+S +RGF    + +   ++L+   N+  T+ + +G+        IF   
Sbjct: 773 YDIEDALVLNKASLDRGFGRCQVVRKNTVQLKKYPNH--TQDILAGMRVDENNKPIF--- 827

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN 854
             +Q L      +  ++ + G+  ANK +    G   L   GA+  +R           +
Sbjct: 828 -QHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTL---GAQQEQR-------AAESH 876

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGI 914
           R     Y G E   ++ V MS    +   +      +  R  R P +GDKF+SR GQKG+
Sbjct: 877 REAPAFYKGPEPSYIDQVMMSVSDNDQALIK-----VLLRQTRRPELGDKFSSRHGQKGV 931

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           C +    EDLPF DSG+ PDI+ NPHGFPSRMT+G
Sbjct: 932 CGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVG 966



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E G++Y G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1000 ILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1059

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1060 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1102

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1103 DVCNKCGLMGY 1113


>gi|109104775|ref|XP_001114787.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
           [Macaca mulatta]
          Length = 449

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/278 (50%), Positives = 171/278 (61%), Gaps = 38/278 (13%)

Query: 674 QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
           ++GKQTMG P L ++ +   KLYRLQTP SP  RP  YD  DMDN+P+GTNAIVAVISYT
Sbjct: 4   RVGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYT 63

Query: 734 GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG 793
           GYDMEDAMI+NK+S+ERGFAHG ++KS FI+L        +E +  G D S++       
Sbjct: 64  GYDMEDAMIVNKASWERGFAHGSVYKSEFIDL--------SEKIKQG-DSSLV------- 107

Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
                               FG  P +  +  KL  DGL ++GAKL   DP YSY   + 
Sbjct: 108 --------------------FGIKPGDPRILQKLDDDGLPFIGAKLQYGDPYYSYLNLNT 147

Query: 854 NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKG 913
                  Y  KE   V+ +++ S  T  G     C  I  R+ RNPT+GDKFASR GQKG
Sbjct: 148 GESFVMYYKSKENCVVDNIKVCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKG 205

Query: 914 ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           I S  WPAED+PFT+SG+VPDI+FNPHGFPSRMTIG L
Sbjct: 206 ILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGML 243



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +GYN+YGTE +YSG+ G  ++A IF GVV+YQRLRHMVSDK+Q +    RD
Sbjct: 283 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 333


>gi|403213510|emb|CCK68012.1| hypothetical protein KNAG_0A03250 [Kazachstania naganishii CBS
           8797]
          Length = 1155

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 258/975 (26%), Positives = 414/975 (42%), Gaps = 179/975 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L       +L + D+ P   E Y K + + I K + S       P   
Sbjct: 70  HLDSFNYFVDVDLKKIIKANELILSDVDP---EFYLKYVDIRIGKRSTSSANDHLTP--- 123

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L     
Sbjct: 124 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILSETNE 177

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
            ++    E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    +
Sbjct: 178 REMARLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 234

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N+ ++   N  A  +            S  + M ++    S +++    
Sbjct: 235 ERKSKTYVITKNDKIYLKHNSIAEEIPIVIVLRACGIVSDLEIMQVVCGNDSSYQDIFAV 294

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    ++TQ  +    G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 295 NFEEASKLNVYTQQQALEHIGTKVKTMRRQKLSTLQEGIE----AIATTVVAHLTVEALD 350

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ M  ++   +     +D  D +  + +   G L    +  L KK     K+
Sbjct: 351 FREKALYMAMMARRVVMAMYNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNHDFKT 410

Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+ +    + A        ++I S +   ++TGN S  +      M+ +G   +
Sbjct: 411 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 463

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 464 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 523

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  I      LG+  +T +  +       V L+G +VG  + +
Sbjct: 524 ALMTHITTDDEEEPIKKLCYI------LGVEDITVIDSASLHLNYGVYLNGTLVG--ITR 575

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
                V + R L+  G KI + + I Y+   +        +++ T  GR+ RP++ + AG
Sbjct: 576 FPNRFVHQFRSLRRTG-KISEFISI-YINSHQHA------VHIATDGGRICRPLIIVTAG 627

Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                      +E++   E+    I +  K+  P IT H E+  
Sbjct: 628 KSHVTADHLRKLLDGELVFDDFLKLGLVEYLDVNEENDSFIALYEKDLEPAIT-HMEIEP 686

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 687 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 746

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + ++ D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+ 
Sbjct: 747 SKTIELINYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 806

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+       +I                 WQ               + L
Sbjct: 807 YPNH--TQDIIGGMRVDENNERI-----------------WQ--------------HEAL 833

Query: 828 GPDGLVYVGAKL-------------NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM 874
           GPDGL  VG KL             N  +P +S   E++ R     Y   E   ++ V M
Sbjct: 834 GPDGLGEVGMKLNSGQVYINKSVPTNSTEP-FSGNTEAQYRETPVIYRAPESSHIDQVMM 892

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
           S    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF+D G+VPD
Sbjct: 893 SVSDNDQALIK-----VLLRQSRRPELGDKFSSRHGQKGVCGIIVQQEDMPFSDQGVVPD 947

Query: 935 IVFNPHGFPSRMTIG 949
           I+ NPHGFPSRMT+G
Sbjct: 948 IIMNPHGFPSRMTVG 962



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSGV G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 996  ILVDQGFNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1055

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1056 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1098

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1099 DVCNKCGLMGY 1109


>gi|6324781|ref|NP_014850.1| Ret1p [Saccharomyces cerevisiae S288c]
 gi|2507350|sp|P22276.2|RPC2_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
           Short=RNA polymerase III subunit C2; AltName: Full=C128;
           AltName: Full=DNA-directed RNA polymerase III 130 kDa
           polypeptide
 gi|1420485|emb|CAA99422.1| RPC128 [Saccharomyces cerevisiae]
 gi|151945297|gb|EDN63540.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
 gi|256269629|gb|EEU04911.1| Ret1p [Saccharomyces cerevisiae JAY291]
 gi|259149688|emb|CAY86492.1| Ret1p [Saccharomyces cerevisiae EC1118]
 gi|285815086|tpg|DAA10979.1| TPA: Ret1p [Saccharomyces cerevisiae S288c]
 gi|392296534|gb|EIW07636.1| Ret1p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1149

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 259/977 (26%), Positives = 413/977 (42%), Gaps = 180/977 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   E Y K + + + K + S  K    P   
Sbjct: 61  HLDSFNYFVDTDLKKIIKANQLILSDVDP---EFYLKYVDIRVGKKSSSSTKDYLTP--- 114

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L +   
Sbjct: 115 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
           +++ +  E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    +
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 225

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N  ++   N  A  +            S  + M L+    S +++    
Sbjct: 226 ERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAV 285

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 286 NLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGIE----AIATTVIAHLTVEALD 341

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K 
Sbjct: 342 FREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKL 401

Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+ +    + A        ++I S +   ++TGN S  +      M+ +G   +
Sbjct: 402 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 454

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 455 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 514

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  +      LG+  +T +  +       V L+G ++G I  +
Sbjct: 515 ALMTHITTDDEEEPIKKLCYV------LGVEDITLIDSASLHLNYGVYLNGTLIGSI--R 566

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
             T  V + R L+  G    K  E + +      M ++    + T  GR+ RP++ ++ G
Sbjct: 567 FPTKFVTQFRHLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSDG 618

Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                      +E++   E+    I +  K+  P +T H E+  
Sbjct: 619 QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLEIEP 677

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 678 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 737

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+ 
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+                 R+       WQ +               L
Sbjct: 798 YANH--TQDIIGGM-----------------RVDENGDPIWQHQ--------------SL 824

Query: 828 GPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVV 872
           GPDGL  VG K       +N+  P  S    + N        R     Y G E   ++ V
Sbjct: 825 GPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQV 884

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            MS    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+V
Sbjct: 885 MMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIV 939

Query: 933 PDIVFNPHGFPSRMTIG 949
           PDI+ NPHGFPSRMT+G
Sbjct: 940 PDIIMNPHGFPSRMTVG 956



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 990  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1093 DVCDKCGLMGY 1103


>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
 gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
          Length = 1150

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 259/999 (25%), Positives = 426/999 (42%), Gaps = 172/999 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVED----IAPIEFE 97
           K LTD+      DK N    FL   G    H+ SF++ +D  L   ++     ++ ++ E
Sbjct: 34  KKLTDE-INTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQVILSDVDPE 92

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            Y K + + + K + S  K    P         P E R     YS P  V + ++     
Sbjct: 93  FYLKYVDIRVGKRSTSSAKDYLTP---------PHECRLRDMTYSAPIYVDIEYTRGRNI 143

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                 E+GR+PIML+S +C L  +   ++ +  E P + GGYFIV G EK++ +     
Sbjct: 144 IMHKDVELGRMPIMLRSNKCTLYGIDEKEMAKLNECPLDPGGYFIVNGTEKVILVQEQLS 203

Query: 218 RNHPIAIKRNAWKNRGLLFSDL--GVYIRSVKRDESATNNVLHFVTNG-----------S 264
           +N  I     A + +G++ + +    + R  K      N+ ++   N             
Sbjct: 204 KNRIIV---EADEKKGIVQASVTSSTHERRSKTYVITKNDKIYLKHNSITEEIPIVIVLK 260

Query: 265 ARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQYDLR 312
           A  + S  + M L+    S +++             I+TQ  +  F G   K   +  L 
Sbjct: 261 ACGVVSDLEIMQLVCGNDSSYQDIFAVNLEEASRLNIYTQQQALEFIGTKVKTMRRQKLS 320

Query: 313 HLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIML 367
            L E +E     +   ++ HL     D+ +K L ++ MT ++   +Q    +D  D +  
Sbjct: 321 VLQEGIE----AIATTVVAHLTVEALDFREKALYMAMMTRRVVMAIQNPKMVDDRDYVGN 376

Query: 368 QEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGK 423
           + +   G L    +  L KK  S   A + +  +    RA   ++ ++  + + N+++G 
Sbjct: 377 KRLELAGQLISLLFEDLFKKFNSDFKATIDKV-LKKPNRAMEYDALLSINVHSNNITSGL 435

Query: 424 NSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLR 472
           N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S PR L+
Sbjct: 436 NRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQ 492

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPV 529
              +G +C   TP+G  CGL+ +L     I+   E  P K L  I      LG+  ++ +
Sbjct: 493 PSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKRLCYI------LGVEDVSLI 546

Query: 530 IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMG 589
             +       V L+G ++G    +     V + R L+  G KI + + I Y    +K   
Sbjct: 547 DSASLHLNFGVYLNGTLIGTT--RFPIKFVSQFRHLRRTG-KISEFISI-YANSHQKA-- 600

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEWIGTFEQ 623
               +++ T  GR+ RP++ +  G                           +E++   E+
Sbjct: 601 ----VHIATDGGRICRPLIIVTKGKSHVTADHLRRLLNGELVFDDFLKLGLVEYLDVNEE 656

Query: 624 VFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
               I +  K+     +TH E+     L  +A LIP P  NQSPRN YQC MGKQ +G  
Sbjct: 657 NDSFIALYEKDIESA-STHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAI 715

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
             N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD+EDA++L
Sbjct: 716 AYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVL 775

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           NK+S +RGF      +     L+   N+  T+ +  G+                 R+   
Sbjct: 776 NKASIDRGFGRCETRRKTTTVLKRYPNH--TQDIIGGM-----------------RVDEN 816

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------------NERDPMYSYWK 850
               WQ K               LG DGL  VG K+             N+ + M +  +
Sbjct: 817 GEPIWQHK--------------ALGADGLGEVGMKVESGQIYINKSVPTNQSNDMTTQAQ 862

Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
           +++ R     Y   E   ++ V MS    +   +      +  R  R P +GDKF+SR G
Sbjct: 863 QAQYRETPVIYRAPEPSHIDQVMMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHG 917

Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           QKG+C +    ED+PF D G+VPDI+ NPHGFPSRMT+G
Sbjct: 918 QKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVG 956



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 990  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1093 DVCDKCGLMGY 1103


>gi|349581364|dbj|GAA26522.1| K7_Ret1p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1149

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 259/977 (26%), Positives = 413/977 (42%), Gaps = 180/977 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   E Y K + + + K + S  K    P   
Sbjct: 61  HLDSFNYFVDTDLKKIIKANQLILSDVDP---EFYLKYVDIRVGKKSSSSTKDYLTP--- 114

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L +   
Sbjct: 115 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
           +++ +  E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    +
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 225

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N  ++   N  A  +            S  + M L+    S +++    
Sbjct: 226 ERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAV 285

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 286 NLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGIE----AIATTVIAHLTVEALD 341

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K 
Sbjct: 342 FREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKL 401

Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+ +    + A        ++I S +   ++TGN S  +      M+ +G   +
Sbjct: 402 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 454

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 455 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 514

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  +      LG+  +T +  +       V L+G ++G I  +
Sbjct: 515 ALMTHITTDDEEEPIKKLCYV------LGVEDITLIDSASLHLNYGVYLNGTLIGSI--R 566

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
             T  V + R L+  G    K  E + +      M ++    + T  GR+ RP++ ++ G
Sbjct: 567 FPTKFVTQFRHLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSDG 618

Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                      +E++   E+    I +  K+  P +T H E+  
Sbjct: 619 QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLEIEP 677

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 678 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 737

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+ 
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+                 R+       WQ +               L
Sbjct: 798 YANH--TQDIIGGM-----------------RVDENGEPIWQHQ--------------SL 824

Query: 828 GPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVV 872
           GPDGL  VG K       +N+  P  S    + N        R     Y G E   ++ V
Sbjct: 825 GPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQV 884

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            MS    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+V
Sbjct: 885 MMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIV 939

Query: 933 PDIVFNPHGFPSRMTIG 949
           PDI+ NPHGFPSRMT+G
Sbjct: 940 PDIIMNPHGFPSRMTVG 956



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 990  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1093 DVCDKCGLMGY 1103


>gi|351713401|gb|EHB16320.1| DNA-directed RNA polymerase III subunit RPC2 [Heterocephalus
           glaber]
          Length = 1133

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 389/903 (43%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +  + M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEERVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L   IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLACTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYVSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++   L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLAGNLGVEDVNFLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPM--YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+   S  ++ + + V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSSVAQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|365762885|gb|EHN04417.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score =  256 bits (655), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 258/977 (26%), Positives = 413/977 (42%), Gaps = 180/977 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   E Y K + + + K + S  K    P   
Sbjct: 61  HLDSFNYFVDTDLKKIIKANQLILSDVDP---EFYLKYVDIRVGKKSSSSTKDYLTP--- 114

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L +   
Sbjct: 115 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
           +++ +  E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    +
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 225

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N  ++   N  A  +            S  + M L+    S +++    
Sbjct: 226 ERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAV 285

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 286 NLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGIE----AIATTVIAHLTVEALD 341

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K 
Sbjct: 342 FREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKL 401

Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+ +    + A        ++I S +   ++TGN S  +      M+ +G   +
Sbjct: 402 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 454

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGJ+ +L
Sbjct: 455 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGJVKNL 514

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  +      LG+  +T +  +       V L+G ++G I  +
Sbjct: 515 ALMTHITTDDEEEPIKKLCYV------LGVEDITLIDSASLHLNYGVYLNGTLIGSI--R 566

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
             T  V + R L+  G    K  E + +      M ++    + T  GR+ RP++ ++ G
Sbjct: 567 FPTKFVTQFRHLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSDG 618

Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                      +E++   E+    I +  K+  P +T H E+  
Sbjct: 619 QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLEIEP 677

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 678 FTILGXVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 737

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+ 
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+                 R+       WQ +               L
Sbjct: 798 YANH--TQDIIGGM-----------------RVDENGDPIWQHQ--------------SL 824

Query: 828 GPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVV 872
           GPDGL  VG K       +N+  P  S    + N        R     Y G E   ++ V
Sbjct: 825 GPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQV 884

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            MS    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+V
Sbjct: 885 MMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIV 939

Query: 933 PDIVFNPHGFPSRMTIG 949
           PDI+ NPHGFPSRMT+G
Sbjct: 940 PDIIMNPHGFPSRMTVG 956



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 990  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1093 DVCDKCGLMGY 1103


>gi|161527855|ref|YP_001581681.1| DNA-directed RNA polymerase subunit B [Nitrosopumilus maritimus
           SCM1]
 gi|160339156|gb|ABX12243.1| RNA polymerase Rpb2 domain 6 [Nitrosopumilus maritimus SCM1]
          Length = 1115

 Score =  256 bits (655), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 254/964 (26%), Positives = 413/964 (42%), Gaps = 152/964 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  L+ GL   + ++  I+ E      K+ + K  + +P++    +        P
Sbjct: 25  HLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMME--LDGSITHITP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     YS P  +  +   DGK   +    +G VP+M KS  C L N +  +L+E G
Sbjct: 83  AEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVEHG 142

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN---RGLLFSDLGVYIRSV-- 246
           E P++ GGYFI+ G E+++  L +   N  I  +     N   +  ++S +  Y   +  
Sbjct: 143 EDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRETVGGNIVHKAKVYSSIVGYRAKLEL 202

Query: 247 --KRDESATNNV------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE---------GI 289
             K D      +      +  VT   A  + S R+    + ++  L +E          +
Sbjct: 203 VMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIAAAVSLVDELQDELEASFEKAGDV 262

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            T  D+ V+  +     +  +     +++  + +L   +LPHL    ++  +K   L   
Sbjct: 263 PTAKDAIVYISKRIAPGMLEEF----QIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEA 318

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
            CKL  +    ++ D +D    + I   G +   L +              E+SG    +
Sbjct: 319 ACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGI 378

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
             + + AA R   I   + N +ATGN   G+    QL+         +  N +  +SH R
Sbjct: 379 --NAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLL---------DRTNYLSTISHLR 427

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            + +    +   + E R L    +G ICP  TP+G+ CGL+ +L  +  IS  +PS+   
Sbjct: 428 RI-QSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSE--- 483

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD--QIATSLVPKLRMLKI--- 567
           +I   L  LG +      + + +    + +DGR++GY  D  Q+A SL    R  KI   
Sbjct: 484 EIVEKLYDLGTVHFFDAKEDLKKDGTRIFVDGRLIGYYKDGEQLAESLRDLRRNSKIHPH 543

Query: 568 VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAA 612
           VG    KS EI          G    LY+    GR+LRP++                ++ 
Sbjct: 544 VGVSFHKS-EI---------EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISK 593

Query: 613 GNIEW-----IGTFEQVFM----DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
             I W     +G  E +      +  +T+ E      TH E+     L   A++IP P+ 
Sbjct: 594 KLISWTDLLRMGVLEMIDANEEENCYVTLDEKDTKKHTHLEVFPPAILGAGASIIPYPEH 653

Query: 664 NQSPRNMYQCQMGKQTMG--TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           NQSPRN Y+  M KQ++G  TP +N       + + +  P  P         L +++ P 
Sbjct: 654 NQSPRNTYESAMAKQSLGFSTPMMNT--STYVRQHFMLYPQVPIVNTKAMKLLGLEDRPA 711

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G N +VAV+ + GY++EDA++L+K+S +RG      F+           Y      Y   
Sbjct: 712 GQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRI----------YDAEAKQYP-- 759

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
            G M  A   F + + +            + Y G + A + LE+    DG+V   A +  
Sbjct: 760 -GGMRDA---FEIPNAED---------NIRGYKG-ERAYRLLEE----DGVVATEAPVKG 801

Query: 842 RD--------PMY-SYWKESEN-----RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            D        P +   ++E E+     R  +      E   V+ V M+    EGG +   
Sbjct: 802 GDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSETGVVDTVVMTQS-NEGGKMYK- 859

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
              I  R  R P +GDKFASR GQKG+  +   AEDLP+T SG+ PD++ NPH FPSRMT
Sbjct: 860 ---IRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTASGMSPDVLINPHAFPSRMT 916

Query: 948 IGFL 951
           +G +
Sbjct: 917 VGMM 920



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ Y G E MY G  G     ++F GVV+YQ+L HMV+DK   +
Sbjct: 957  GFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHAR 1000


>gi|323302937|gb|EGA56741.1| Ret1p [Saccharomyces cerevisiae FostersB]
          Length = 1149

 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 259/977 (26%), Positives = 413/977 (42%), Gaps = 180/977 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   E Y K + + + K + S  K    P   
Sbjct: 61  HLDSFNYFVDTDLKKIIKANQLILSDVDP---EFYLKYVDIRVGKKSSSSTKDYLTP--- 114

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L +   
Sbjct: 115 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
           +++ +  E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    +
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 225

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N  ++   N  A  +            S  + M L+    S +++    
Sbjct: 226 ERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAV 285

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 286 NLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGIE----AIATTVIAHLTVEALD 341

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K 
Sbjct: 342 FREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKL 401

Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+ +    + A        ++I S +   ++TGN S  +      M+ +G   +
Sbjct: 402 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 454

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 455 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 514

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  +      LG+  +T +  +       V L+G ++G I  +
Sbjct: 515 ALMTHITTDDEEEPIKKLCYV------LGVEDITLIDSASLHLNYGVYLNGTLIGSI--R 566

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
             T  V + R L+  G    K  E + +      M ++    + T  GR+ RP++ ++ G
Sbjct: 567 FPTKFVTQFRHLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSDG 618

Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                      +E++   E+    I +  K+  P +T H E+  
Sbjct: 619 QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLEIEP 677

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 678 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 737

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+ 
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+                 R+       WQ +               L
Sbjct: 798 YANH--TQDIIGGM-----------------RVDENGXPIWQHQ--------------SL 824

Query: 828 GPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVV 872
           GPDGL  VG K       +N+  P  S    + N        R     Y G E   ++ V
Sbjct: 825 GPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQV 884

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            MS    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+V
Sbjct: 885 MMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIV 939

Query: 933 PDIVFNPHGFPSRMTIG 949
           PDI+ NPHGFPSRMT+G
Sbjct: 940 PDIIMNPHGFPSRMTVG 956



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 990  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1093 DVCDKCGLMGY 1103


>gi|426225175|ref|XP_004006743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Ovis
           aries]
          Length = 1133

 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVSLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|223994131|ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
           [Thalassiosira pseudonana CCMP1335]
 gi|220978064|gb|EED96390.1| DNA directed RNA polymerase III, second largest subunit
           [Thalassiosira pseudonana CCMP1335]
          Length = 1108

 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 256/918 (27%), Positives = 392/918 (42%), Gaps = 161/918 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P + R     YS P  V V ++   +        +GR+PIML+S +C LR+ +  +L + 
Sbjct: 62  PFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQM 121

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD-----LGVYIRS 245
            E P + GGYF++ G EK+            I I+    KNR ++  D     +   I S
Sbjct: 122 KECPYDPGGYFVIKGVEKV------------ILIQEQLSKNRVIIEEDSKTGCVSASITS 169

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHR------------KSMCL---LGMMQSLHEE--- 287
             R+  +   +  F+ NG  R    H             K+M +   L  +QS+  E   
Sbjct: 170 STRERKSKAYI--FIKNG--RLFLKHNTLAEDVPICVAMKAMGVESDLEFVQSVGSEPEV 225

Query: 288 --------------GIHTQHDSKVFFGQIFKEKLQY--DLRHLNEVEICDYMLTNCILPH 331
                         GI TQ  +  + G   + K       R L+  +    +  N +L H
Sbjct: 226 IDALALSLEEPSKLGIVTQRHALKYIGNKMRAKRGAFGSTRKLSPEDEARDVFANVVLSH 285

Query: 332 LD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--- 384
           +     D+  K + + H+  +L  V  G   LD +D    + +   GSL L LL ++   
Sbjct: 286 VPVVNFDFHAKTIYIGHIVRRLVMVQLGKSSLDDKDYYGNKRLELAGSL-LSLLFEDLFK 344

Query: 385 ------KSGTSAVLKES------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
                 K  T  VL +       D+    R  SI   M + +++GN    +      M  
Sbjct: 345 HFNTDLKKQTDMVLSKPNRAQAFDVIKTIRPDSIAYGMMSAISSGNWVLKRFR----MDR 400

Query: 433 SGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPC 490
           +G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  C
Sbjct: 401 AG---VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEAC 457

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV----IQSIPEQALMVMLDGRI 546
           GL+ +L     I+    S+ + ++       G+  +T +    I S    A +V+L+G I
Sbjct: 458 GLVKNLALLAHITTDEESEAIERLCR---DCGVEDVTLLSGHEIHS--RNAFLVLLNGLI 512

Query: 547 VGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           VG  +      LV  LR L+  G+        +YL   +K       +++ T  GR+ RP
Sbjct: 513 VG--VHTRPLWLVKSLRSLRRQGQM--GEFVSLYLHDGQK------AVHIATDGGRVCRP 562

Query: 607 VM-----------------NLAAGNI-----------EWIGTFEQVFMDICITMKEAYPG 638
           ++                  LA G I           E++   E+    I +T +E    
Sbjct: 563 LIIVDEKTALPRLKQVHIEGLALGTIHIKDLLRQGVVEYVDVNEENNCLIAVTERELEWM 622

Query: 639 ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
             TH E+     L  +A LIP P  NQSPRN YQ  MGKQ +GT  +N   +  G LY +
Sbjct: 623 AYTHLEIDPMTLLGVVAGLIPNPHHNQSPRNTYQSAMGKQAIGTVAINQYSRFDGMLYTM 682

Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
             P  P  +    D ++ DN P G NA +AV+SY+GYD+EDA++LNK+S +RGF    + 
Sbjct: 683 VYPHKPMVKTRTLDLINFDNIPAGQNACIAVMSYSGYDIEDAVVLNKASVDRGFGRCMVL 742

Query: 759 KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           K    + ++    Y   TM               G            DK   + Y G D 
Sbjct: 743 K----KSQASVRRYQNGTMDRTC-----------GAPDPSAFPSGEEDKRYAR-YRGIDK 786

Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC-----VEVVR 873
               +  +L  +G V V    N+  P  +         V+ +YSG          V+ V 
Sbjct: 787 DGLCMVGELMENGTVMV----NKESPTDTSTPVERLAQVSYKYSGMSYRSSAPSYVDRVL 842

Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
           +SS   E   +      +  R  R P +GDKFASR GQKG+C +  P  D+PF + G  P
Sbjct: 843 ISSNENEQFLIK-----VMLRQVRRPELGDKFASRHGQKGVCGLIVPQVDMPFNEQGFPP 897

Query: 934 DIVFNPHGFPSRMTIGFL 951
           D++ NPHGFPSRMT+G L
Sbjct: 898 DLIMNPHGFPSRMTVGKL 915



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            + +G NY G +  YSGV+G+ + A IF G V YQ+L+HMV DK   +    R    +   
Sbjct: 954  IRNGLNYTGKDIFYSGVNGAPLDAYIFSGPVFYQKLKHMVLDKMHARSRGPRAVLTRQPT 1013

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD + +Y
Sbjct: 1014 EGRSRDGGLRLGEM--ERDCLIAY 1035


>gi|83282218|ref|XP_729674.1| DNA-directed RNA polymerase, subunit beta [Plasmodium yoelii yoelii
            17XNL]
 gi|23488130|gb|EAA21239.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            yoelii yoelii]
          Length = 1323

 Score =  256 bits (654), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 264/1004 (26%), Positives = 435/1004 (43%), Gaps = 156/1004 (15%)

Query: 68   LGAPHIASFDFMLDEGLDLAVEDI------APIEFEIYGKTLKLNIVKAAISEPKVPAGP 121
            L   HI S+++ +   +   +         + I+   Y + L +++ + +I E  + +  
Sbjct: 168  LVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYLEFLDISVGRPSIEENMIESNL 227

Query: 122  VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK---EVGRVPIMLKSKRCH 178
                     P   RQ    YS P  V V +    K     TK   E+GR+P+ML+S  C 
Sbjct: 228  T--------PQICRQRDLTYSAPIYVDVEYI---KGNSIVTKNNVEIGRLPVMLRSDICV 276

Query: 179  LRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRL---LINNRRNHPIAIKRNAW------ 229
            L N    +L++ GE P + GGYFIV G E+++ +   L  NR    + IK N        
Sbjct: 277  LNNKNENELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICATITST 336

Query: 230  ----KNR-GLLFSDLGVYIRSVKRDES-ATNNVLHFVTNGSARFMF----SHRKSMCLLG 279
                K+R  +++ +  +Y++     E      +L  +   S + +F    SH+  M L G
Sbjct: 337  TAESKSRCAIVYKNNKLYLKHNSFTEDIGVCIILRAMGYESDQEIFQMIGSHK--MYLNG 394

Query: 280  MMQSLHE---EGIHTQHDSKVFFGQIFKEKL--------QYDLRHLNEVEICDY---MLT 325
            ++ SL++   E I T  D+ ++ G+  + +L          + +  NE +I +     L+
Sbjct: 395  ILLSLYDLYTENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDIIEEGLDFLS 454

Query: 326  NCILPHLD-----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL---- 376
              +L H+      D+ +K  C+  M  ++        +LD +D    + +   G L    
Sbjct: 455  RVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNELDDKDYYGNKRLELAGQLISLL 514

Query: 377  --------YLQLLKKEKSGTSAVLKES-----------------------DIYAAFRASS 405
                    Y  L K+     S  ++ S                       D++       
Sbjct: 515  FEDLYKRFYFTLKKQIDQTLSKYMQSSYNSKLKNNSSIGGNNNFSDNSYPDVFRNLPKDI 574

Query: 406  IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMR 464
            I   M   ++TGN +  +      M+ SG   +++ ++R+ +++    + R  S F++ R
Sbjct: 575  ITRGMQTAISTGNWNIKRFK----MEKSG---VSQVLSRLSFIACIGMMTRLNSQFEKGR 627

Query: 465  S-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGM 523
              S PR L+   WG +CP  TP+G  CGL+ +L     ++    +     +  +L +LG+
Sbjct: 628  KVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNDNN--ENLIEILYTLGV 685

Query: 524  LPLTPVI--QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYL 581
                 +   +   E    V+L+G ++G  + +     + ++R L+  G KI + + I   
Sbjct: 686  EDSDSLTGEEMYKEGVFFVVLNGILLG--VHRKPHKFMKRIRCLRRFG-KIGEFVSIY-- 740

Query: 582  KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------I 615
                    L+  +Y+ T  GR+ RP++ +  G                           I
Sbjct: 741  -----DNFLHNAIYISTDGGRLCRPLIIVENGKSKLLNSHIKALESGEINFFDLLKSSVI 795

Query: 616  EWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
            EWI   EQ  + I +  K+     TTH E+     L  +A LIP P+ NQSPRN YQC M
Sbjct: 796  EWIDVNEQNNLLIALNEKDINLN-TTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAM 854

Query: 676  GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGY 735
            GKQ +G+   N   +    LY L  P  P  +    + ++ +  P G NAIV+V+S+ GY
Sbjct: 855  GKQAIGSIGYNQFIRCDTLLYLLIYPQKPLVKSKTIEFINFEKLPAGQNAIVSVMSFCGY 914

Query: 736  DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS-MMQAQIFFGV 794
            D+EDA+++NKSS +RGF      +  FIEL+  +N      + S +  S   Q Q   G 
Sbjct: 915  DIEDAIVMNKSSIDRGFGRCMSLRKHFIELKKYFNGSNDIVLPSPLSISKQQQMQKKTGK 974

Query: 795  VHYQRLRHMVSDKWQT-----KDYFGRDPANKALEDKLGPDGLVYVG--AKLNERDPMYS 847
                 L +   D  +T     K Y   D         L  +G VYV   + +N +D +  
Sbjct: 975  ESNDNLANTKEDPRKTINSELKKYHSLDADGVVSIGYLLKEGQVYVNKYSPINVKDHVKD 1034

Query: 848  YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFAS 907
              K   N +       K      V ++   FTE G        I  R  R P +GDKF+S
Sbjct: 1035 MSKLDLNDFKLSEVKYKSVYPSYVDKII--FTENGEGLK-IYKIIMRQSRLPELGDKFSS 1091

Query: 908  RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R GQKG+  +    ED+PFT+SG+ PD++ NPHGFPSRMT+G L
Sbjct: 1092 RHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKL 1135



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G+N+   E +YSG+ G  ++  IF G ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 1172 GFNWSCKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARSRGPRQLLTRQPTEGR 1231

Query: 828  GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
              +G + +G    ERD + +Y              G   + +E + +SS   +   +  +
Sbjct: 1232 SKEGGLRLGEM--ERDCLIAY--------------GVSNLLLERLMLSSDVCD-AYICED 1274

Query: 888  CAYIGY 893
            C  +GY
Sbjct: 1275 CGMMGY 1280


>gi|354486330|ref|XP_003505334.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cricetulus
           griseus]
 gi|344253234|gb|EGW09338.1| DNA-directed RNA polymerase III subunit RPC2 [Cricetulus griseus]
          Length = 1133

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 387/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLALLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++   L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 STFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTVKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|410965427|ref|XP_003989249.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC2 [Felis catus]
          Length = 1133

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 239/892 (26%), Positives = 387/892 (43%), Gaps = 118/892 (13%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYFIV G EK++         R+++   R   +     +  +     +++ V
Sbjct: 159 NECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKXRTNMAV 218

Query: 242 -----YIRSVKRDESATNNVLHFVTNGS------ARFMFSHRKSMCLLG-MMQSLHEEGI 289
                Y+R     E     V+ F   G        + + +    M   G  ++   +  I
Sbjct: 219 KQGRFYLRHNTLSEDIPI-VIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQI 277

Query: 290 HTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCL-SHM 345
            TQ  +  + G ++ ++++        ++E    +L + IL H+   ++  +  C+ + +
Sbjct: 278 FTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAV 337

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES------ 395
             +   + QG  ++D  D    + +   G L    +  L KK  S    +  +       
Sbjct: 338 MVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRA 397

Query: 396 ---DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
              D+    R   I + M N ++TGN S  +      M   G   + + ++R+ Y+S   
Sbjct: 398 AQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALG 450

Query: 453 AVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +    
Sbjct: 451 MMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGP 510

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG- 569
           + ++ S L    +  L     S P    +V L+G I+G I D     LV   R+++  G 
Sbjct: 511 IVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLVNTFRLMRRAGY 567

Query: 570 --EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAA 612
             E +  S  +               +Y+ +  GR+ RP +                LA 
Sbjct: 568 VNEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ 616

Query: 613 GN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
           G            +E++   E+   +I +  +      TTH E+     L   A LIP P
Sbjct: 617 GYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTLLGVCAGLIPYP 675

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
             NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +    + ++ +  P 
Sbjct: 676 HHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPA 735

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+     Y  +T +  V
Sbjct: 736 GQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKV 790

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
            G M+ A     +  ++ L           D  G     + +E+K     LV        
Sbjct: 791 MGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---QVLVNKSMPTVT 836

Query: 842 RDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
           + P+       + +Y  V   Y G  +  +E V +SS   +   +      +  R  R P
Sbjct: 837 QIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRP 891

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 892 EIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|344266576|ref|XP_003405356.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC2-like [Loxodonta africana]
          Length = 1133

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 243/903 (26%), Positives = 389/903 (43%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ +++L        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRLWGGGPKKTKMEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKEKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTAKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP- 829
            Y  +T +  V G M+ A     +      RH + D         +    + L +K  P 
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPI-----WRHEILDADGICSPGEKVENKQVLVNKSMPT 834

Query: 830 -DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
              +   G+ + ++ P Y        + V   Y G  +  +E V +SS   +   +    
Sbjct: 835 VTQIPLEGSNIPQQ-PQY--------KDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|300795995|ref|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2 [Bos taurus]
 gi|296487427|tpg|DAA29540.1| TPA: polymerase (RNA) III (DNA directed) polypeptide B [Bos taurus]
          Length = 1133

 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|46195739|ref|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [Mus musculus]
 gi|51704303|sp|P59470.2|RPC2_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
           Short=RNA polymerase III subunit C2; AltName: Full=C128;
           AltName: Full=DNA-directed RNA polymerase III 127.6 kDa
           polypeptide; AltName: Full=DNA-directed RNA polymerase
           III subunit B
 gi|45829714|gb|AAH68143.1| Polymerase (RNA) III (DNA directed) polypeptide B [Mus musculus]
          Length = 1133

 Score =  256 bits (653), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 387/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++   L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 STFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|300798312|ref|NP_001178807.1| DNA-directed RNA polymerase III subunit RPC2 [Rattus norvegicus]
          Length = 1133

 Score =  256 bits (653), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 387/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++   L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 STFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|238908503|ref|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo
           sapiens]
 gi|388454304|ref|NP_001253862.1| DNA-directed RNA polymerase III subunit RPC2 [Macaca mulatta]
 gi|114646699|ref|XP_001161567.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 3
           [Pan troglodytes]
 gi|301784547|ref|XP_002927687.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Ailuropoda melanoleuca]
 gi|395744767|ref|XP_003778156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
           [Pongo abelii]
 gi|397525258|ref|XP_003832591.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
           [Pan paniscus]
 gi|29428029|sp|Q9NW08.2|RPC2_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
           Short=RNA polymerase III subunit C2; AltName: Full=C128;
           AltName: Full=DNA-directed RNA polymerase III 127.6 kDa
           polypeptide; AltName: Full=DNA-directed RNA polymerase
           III subunit B
 gi|28277230|gb|AAH46238.1| Polymerase (RNA) III (DNA directed) polypeptide B [Homo sapiens]
 gi|119618186|gb|EAW97780.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_a
           [Homo sapiens]
 gi|158256702|dbj|BAF84324.1| unnamed protein product [Homo sapiens]
 gi|355564641|gb|EHH21141.1| hypothetical protein EGK_04143 [Macaca mulatta]
 gi|355786484|gb|EHH66667.1| hypothetical protein EGM_03706 [Macaca fascicularis]
 gi|380814556|gb|AFE79152.1| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Macaca
           mulatta]
 gi|410213674|gb|JAA04056.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410252446|gb|JAA14190.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410301480|gb|JAA29340.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410336371|gb|JAA37132.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
          Length = 1133

 Score =  256 bits (653), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|73969955|ref|XP_531760.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Canis
           lupus familiaris]
          Length = 1133

 Score =  256 bits (653), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|126339649|ref|XP_001365927.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
           [Monodelphis domestica]
          Length = 1133

 Score =  256 bits (653), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 241/903 (26%), Positives = 393/903 (43%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNNV-----------------LHFVTNGSARFMFSHRKSMCLLGM--------- 280
             ++ +  N+                 +  V    A  + S ++ + ++G          
Sbjct: 207 THEKKSRTNIAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 281 --MQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKMEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTEKHMDELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPM--YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+   S  ++ + + V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSSVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|365758302|gb|EHN00152.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score =  256 bits (653), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 259/977 (26%), Positives = 413/977 (42%), Gaps = 180/977 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   E Y K + + + K + S  K    P   
Sbjct: 61  HLDSFNYFVDTDLKKIIKANQLILSDVDP---EFYLKYIDIRVGKKSSSSTKDYLTP--- 114

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L +   
Sbjct: 115 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
           +++ +  E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    +
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 225

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N  ++   N  A  +            S  + M L+    S +++    
Sbjct: 226 ERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAV 285

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    I+TQ  +  + G   K   +  L  L E VE     +   ++ HL     D
Sbjct: 286 NLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGVE----AIATTVIAHLTVEALD 341

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K 
Sbjct: 342 FREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKL 401

Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+ +    + A        ++I S +   ++TGN S  +      M+ +G   +
Sbjct: 402 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 454

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 455 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 514

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  +      LG+  +T +  +       V L+G ++G I  +
Sbjct: 515 ALMTHITTDDEEEPIKNLCYV------LGVEDITLIDSASLHLNYGVYLNGTLIGSI--R 566

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
                V + R L+  G    K  E + +      M ++    + T  GR+ RP++ +++G
Sbjct: 567 FPIKFVTQFRNLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSSG 618

Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                      +E++   E+    I +  K+  P +T H E+  
Sbjct: 619 QSRVKDTHLRQLLDGKLDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLEIEP 677

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 678 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 737

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+ 
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+                 R+       WQ +               L
Sbjct: 798 YANH--TQDIIGGM-----------------RVDENGEPIWQHQ--------------SL 824

Query: 828 GPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVV 872
           GPDGL  VG K       +N+  P  S    + N        R     Y G E   ++ V
Sbjct: 825 GPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNIVNVQTQYREAPVIYRGPEPSHIDQV 884

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            MS    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+V
Sbjct: 885 MMSVSDNDQALIK-----VLLRQSRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIV 939

Query: 933 PDIVFNPHGFPSRMTIG 949
           PDI+ NPHGFPSRMT+G
Sbjct: 940 PDIIMNPHGFPSRMTVG 956



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 990  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1093 DVCDKCGLMGY 1103


>gi|332241688|ref|XP_003270010.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
           [Nomascus leucogenys]
          Length = 1133

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|440907714|gb|ELR57824.1| DNA-directed RNA polymerase III subunit RPC2 [Bos grunniens mutus]
          Length = 1133

 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 45.8 bits (107), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G   + S   G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKVHLASQGLGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|193784141|dbj|BAG53685.1| unnamed protein product [Homo sapiens]
          Length = 1075

 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 244/903 (27%), Positives = 390/903 (43%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 41  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 100

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 101 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 148

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 149 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 208

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 209 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 268

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 269 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 328

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 329 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 381

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 382 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 441

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 442 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 498

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------- 606
              R+++  G   E +  S  +               +Y+ +  GR+ RP          
Sbjct: 499 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 547

Query: 607 VMN-----LAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
           V+N     LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 548 VINKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 606

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 607 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 666

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 667 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 723

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 724 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 767

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 768 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 824

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 825 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 882

Query: 949 GFL 951
           G L
Sbjct: 883 GKL 885



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 922  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 981

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 982  SRDGGLRLGEM--ERDCLIGY 1000


>gi|432094370|gb|ELK25947.1| DNA-directed RNA polymerase III subunit RPC2 [Myotis davidii]
          Length = 1122

 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 246/907 (27%), Positives = 393/907 (43%), Gaps = 148/907 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 88  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 147

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 148 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 195

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSM---CLLGMMQSLHEE---- 287
             ++ +  N+   V  G  RF   H             K+M   C   ++Q +  E    
Sbjct: 196 THEKKSRTNMA--VKQG--RFYLRHNTLSEDIPIVIIFKAMGVECDQEIVQMIGTEEHVM 251

Query: 288 -------------GIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL- 332
                         I TQ  +  + G ++ ++++        ++E    +L + IL H+ 
Sbjct: 252 AAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVP 311

Query: 333 -DDYWDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS 386
             ++  +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S
Sbjct: 312 VKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNS 371

Query: 387 GTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
               +  +          D+    R   I + M N ++TGN S  +      M   G   
Sbjct: 372 EMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG--- 424

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 425 VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 484

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L     I+  +    + ++ S L    +  L     S P    +V L+G I+G I D   
Sbjct: 485 LALMTHITTDMEDGPIVRLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH-- 541

Query: 556 TSLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---- 608
             LV   R+++  G   E +  S  +               +Y+ +  GR+ RP +    
Sbjct: 542 KKLVNTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKK 590

Query: 609 -----------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
                       LA G            +E++   E+   +I +  +      TTH E+ 
Sbjct: 591 QKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIE 649

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  
Sbjct: 650 PFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMV 709

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +    + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+
Sbjct: 710 KTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 769

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                Y  +T +  V G ++ A     +  ++ L           D  G     + +E+K
Sbjct: 770 R----YTNQT-FDKVMGPILDAATRKPIWRHEIL-----------DANGICSPGEKVENK 813

Query: 827 LGPDGLVYVGAKLNERDPM--YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
                LV        + P+   S  ++ + + V   Y G  +  +E V +SS   +   +
Sbjct: 814 ---QVLVNKSMPTVTQIPLEGSSVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLI 870

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPS
Sbjct: 871 K-----MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPS 925

Query: 945 RMTIGFL 951
           RMT+G L
Sbjct: 926 RMTVGKL 932



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 969  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1028

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1029 SRDGGLRLGEM--ERDCLIGY 1047


>gi|172383|gb|AAB59324.1| RNA polymerase III [Saccharomyces cerevisiae]
          Length = 1149

 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 259/977 (26%), Positives = 412/977 (42%), Gaps = 180/977 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   E Y K + + + K + S  K    P   
Sbjct: 61  HLDSFNYFVDTDLKKIIKANQLILSDVDP---EFYLKYVDIRVGKKSSSSTKDYLTP--- 114

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L +   
Sbjct: 115 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
           +++ +  E P + GGYFIV G EK++ +     +N  I     A +  G++ + +    +
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKEGIVQASVTSSTH 225

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N  ++   N  A  +            S  + M L+    S +++    
Sbjct: 226 ERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAV 285

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 286 NLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGIE----AIATTVIAHLTVEALD 341

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K 
Sbjct: 342 FREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKL 401

Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+ +    + A        ++I S +   ++TGN S  +      M+ +G   +
Sbjct: 402 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 454

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 455 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 514

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  +      LG+  +T +  +       V L+G ++G I  +
Sbjct: 515 ALMTHITTDDEEEPIKKLCYV------LGVEDITLIDSASLHLNYGVYLNGTLIGSI--R 566

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
             T  V + R L+  G    K  E + +      M ++    + T  GR+ RP++ ++ G
Sbjct: 567 FPTKFVTQFRHLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSDG 618

Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                      +E++   E+    I +  K+  P +T H E+  
Sbjct: 619 QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLEIEP 677

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 678 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 737

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+ 
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+                 R+       WQ +               L
Sbjct: 798 YANH--TQDIIGGM-----------------RVDENGDPIWQHQ--------------SL 824

Query: 828 GPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVV 872
           GPDGL  VG K       +N+  P  S    + N        R     Y G E   ++ V
Sbjct: 825 GPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQV 884

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            MS    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+V
Sbjct: 885 MMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIV 939

Query: 933 PDIVFNPHGFPSRMTIG 949
           PDI+ NPHGFPSRMT+G
Sbjct: 940 PDIIMNPHGFPSRMTVG 956



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 990  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1093 DVCDKCGLMGY 1103


>gi|403275974|ref|XP_003929693.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Saimiri
           boliviensis boliviensis]
          Length = 1133

 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|47219788|emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1171

 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 241/907 (26%), Positives = 381/907 (42%), Gaps = 149/907 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TP +  + 
Sbjct: 128 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFAKL 187

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++  D    +G  + S 
Sbjct: 188 NECPLDPGGYFIVKGQEKV------------ILIQEQLSKNRIIVDQDRKGAVGASVTSS 235

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRK-------SMCLLGM------------------- 280
             ++ +  N++  V  G  RF   H         ++   GM                   
Sbjct: 236 THEKKSRTNMI--VKQG--RFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIGTEENVM 291

Query: 281 ------MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD- 333
                 ++   +  I TQ  +  + G   + +  +      ++E    +L + IL H+  
Sbjct: 292 ASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMWGGPKKTKMEEARELLASLILTHVPV 351

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS 386
              ++  K + L+ M  ++  + QG  ++D  D    + +   G L    +  L KK  S
Sbjct: 352 KEFNFRAKCIYLAVMVRRVI-LAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNS 410

Query: 387 GTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
               +  +          D+    R   I + M N ++TGN S  +      M   G   
Sbjct: 411 ELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG--- 463

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 464 VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 523

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L     I+  +    + ++   L    +  L     S P    +V L+G I+G I D   
Sbjct: 524 LALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPS-VFLVFLNGNILGVIRDH-- 580

Query: 556 TSLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
             LV   R+++  G   E +  S  +               +Y+ +  GR+ RP + +  
Sbjct: 581 QKLVGTFRLMRRAGFINEFVSISTNLTD-----------RCVYISSDGGRLCRPYIIVKK 629

Query: 613 GN--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
           G                           +E++   E+    I +     +   TTH E+ 
Sbjct: 630 GQPMVKNKHMEDLSQGYRNFEDFLHDGLVEYLDVNEENDCQIALYEHMIHKD-TTHLEIE 688

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  
Sbjct: 689 PFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMV 748

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +    + ++ +  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF    ++K+    L 
Sbjct: 749 KTKTIEIIEFEKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNTKCTLR 808

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                Y  +T +  V G M+ A     +      RH + D         R    + L +K
Sbjct: 809 R----YTNQT-FDKVMGPMLDAATRKPI-----WRHNILDADGICSPGERVENKQVLVNK 858

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             P            + P+    +  + +Y  V   Y G  +  +E V +SS   +   +
Sbjct: 859 SMPT---------VTQTPLEGSTQTGQPQYRDVPICYKGSTDSYIEKVMISSNAEDAFLI 909

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 I  R  R P +GDKF+SR GQKG+C +  P ED+PF D+G+ PDI+ NPHG+PS
Sbjct: 910 K-----ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGYPS 964

Query: 945 RMTIGFL 951
           RMT+G L
Sbjct: 965 RMTVGKL 971



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   
Sbjct: 1005 IRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPT 1064

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1065 EGRSRDGGLRLGEM--ERDCLIGY 1086


>gi|291389954|ref|XP_002711473.1| PREDICTED: DNA-directed RNA polymerase III B [Oryctolagus
           cuniculus]
          Length = 1133

 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRVIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-SVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|119872217|ref|YP_930224.1| DNA-directed RNA polymerase subunit B [Pyrobaculum islandicum DSM
           4184]
 gi|119673625|gb|ABL87881.1| DNA-directed RNA polymerase, subunit B' [Pyrobaculum islandicum DSM
           4184]
          Length = 1127

 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 263/1004 (26%), Positives = 425/1004 (42%), Gaps = 166/1004 (16%)

Query: 39  NTLSAPSLKNLTDKNFGKPPDKQNEFLLT--------LGAPHIASFDFMLDEGLDLAVED 90
           + L  P + +  D +F   P K + + L         L    I SF+  LD+ L   VED
Sbjct: 3   DLLPLPVVTSQQDDSF---PTKDDRWTLVERFIRDKGLANHQIKSFNDFLDKKLPKIVED 59

Query: 91  IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVA 150
              IE EI G  LKL + +  +  P++            YP EAR   + YS P  +T  
Sbjct: 60  FKVIETEIKG--LKLVLERIEVGWPRIKESDGSESL--IYPMEARLRNATYSAPLYLTAT 115

Query: 151 WSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
              D +   T T  +G +PIM+KSKRC+L  L P++ +++ E P ++GGYFI+ G E+++
Sbjct: 116 LYVDDEPYVTETFYIGELPIMVKSKRCNLTRLKPSEYVKKFEDPQDFGGYFIINGSERVI 175

Query: 211 RLLINNRRNHPIAIKRNAWKNRGLLFS-DLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
               +   + PI  K +    + +  +   G+  RS    E   + ++ +VT  +     
Sbjct: 176 ISQEDLVTDRPIYDKGDKPSVKYIAKTISTGIGYRSTLVVELNKDGII-YVTLSAMPVKI 234

Query: 270 SHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY------- 322
                M  LG+     E+ +    D      ++    +  +   + + +  D+       
Sbjct: 235 PFPVYMKALGL--ETDEDVVKAVSDDPEIQKELLPSLIAANQIAITKEDALDFIGGKVAV 292

Query: 323 -------------MLTNCILPHL-----DDYWDKFLCLSHMTCKLFHVVQGMVQLD---- 360
                        +L    LPHL     D+   + + L      L  +V+G+++LD    
Sbjct: 293 GQPKPIRVEKALQLLDRYFLPHLGTTVPDEKKQQEIRLKK-ALMLGQIVKGLIELDLGRR 351

Query: 361 ---SEDSIMLQEIMTGGSL-----------YLQLLKKEKSGTSAVLKESDIYAAFRASSI 406
               +D +  + +   G L           +LQ LK +     A  +   I    R   I
Sbjct: 352 KPDDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQLEKYYARGRIPHIQTIVRPDII 411

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
              +   LATGN   GK    Q++         +  N M  +S+ R V   S  +     
Sbjct: 412 TERVRQALATGNWVGGKTGVSQIL---------DRTNYMSTLSYLRRVV-SSLSRTQPHF 461

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
           E R L    WG +C V TP+G   GL+ +L    +I+  +      ++  +L +LG++P 
Sbjct: 462 EARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDE---GEVEQLLYNLGVVP- 517

Query: 527 TPVIQSIPE--QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
             ++++  E  +   V ++GR++G  +      L   +R L+  G KI   + I  L   
Sbjct: 518 --ILKARDEGIRGAEVYINGRLIG--IHPNPDELARTVRSLRRQG-KISDEINIAVLNN- 571

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVM---------------NLAAGNIEW-----IGTFEQV 624
                    +Y+    GR+ RP++                +  G + W     +G  E +
Sbjct: 572 --------AVYVNCDGGRIRRPLLVVENGKLKLTKEIVEKVRRGELTWDDLVKMGVIEYL 623

Query: 625 FMDICITMKEAYPGITTHRELSK--------TDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
             D     + AY     H +LSK        +  L  +A++IP  + NQSPRN Y+  M 
Sbjct: 624 DAD---EEENAYIATDPHDDLSKYTHVEIIPSAILGAVASIIPYLEHNQSPRNQYEAAMA 680

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ++G P  N+ Y+   + + L  P  P       + +     P G NA+VA+++YTGY+
Sbjct: 681 KQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELIGYSKKPAGQNAVVALLTYTGYN 740

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM-YSGVDGSMMQAQIFFGVV 795
           MEDA+ILNK++ ERG     +F+S+F      Y  Y TE   Y G +   ++        
Sbjct: 741 MEDAIILNKAAVERG-----MFRSVF------YRTYETEEQKYPGGEEDKIE-------- 781

Query: 796 HYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK---LNERDPMYSYWKES 852
                   V D    K Y G +  +   ED + P   VYV +    + +  P   Y    
Sbjct: 782 --------VPDS-SVKGYRGPEAYSHLDEDGIAPPE-VYVSSNEVIIGKTSPPRFYTTLE 831

Query: 853 ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIGYRIQRNPTVGDKFAS 907
             R +  R     +  V V R   G  +   +T +        +  R  R P +GDKFAS
Sbjct: 832 TERILKER----RDSSVAVRRGEKGIVDRVIITESPEGNRLVKVRLRELRIPELGDKFAS 887

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG+  +    ED+PFT+ G+VPDI+ NPH  PSRMT+G L
Sbjct: 888 RHGQKGVVGMILRHEDMPFTEEGIVPDIIVNPHALPSRMTVGQL 931



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY + G E MYSG+ G  + A IF GVV+YQ+L HMV+DK   +
Sbjct: 968  GYKWDGKEVMYSGITGEKLVADIFIGVVYYQKLHHMVADKIHAR 1011


>gi|31873396|emb|CAD97689.1| hypothetical protein [Homo sapiens]
          Length = 1133

 Score =  255 bits (652), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G   +A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPFEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
 gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
          Length = 1118

 Score =  255 bits (652), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 248/965 (25%), Positives = 413/965 (42%), Gaps = 157/965 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ GL   V +   ++ +I    +K   ++    E +   G         YP
Sbjct: 31  HLDSYNAFIERGLQEVVNEFGGVKPDIPDFEVKFGRIRVGEPEFQEAHG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 87  MDARIRNLTYSAPLYLEMIPVVKGIEQEPVEVRIGELPIMLKSKVCRLYGLSDEELIKLG 146

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL--FSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++++  + R L   FS    Y R++   
Sbjct: 147 EDPKDPGGYFIINGSERVI-VSIEDIAPNRTLVEKDERQERYLAKCFSYRHGY-RALITV 204

Query: 250 ESATNNVLH-----------FVTNGSARFMFSHRKSMCLLG----MMQSLHE-----EGI 289
           E   + +L+           FV    A  +   +  +  +G    + Q L +       I
Sbjct: 205 ERRKDGILYVSIPNVPKPVKFVYVMRALGLEKDKDIVDAVGNDPEVQQVLFDNLEDASDI 264

Query: 290 HTQHDSKVFFGQIFK--EKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLS 343
            TQ ++    G++    +  +Y L+        +Y++ N +LPH+    +D   K   L 
Sbjct: 265 QTQMEALELIGRLVAPGQAREYRLKR------AEYVIDNNLLPHMGVNPEDRIRKAYYLG 318

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLKE 394
            M  K+  +  G    D +D    + +   G L        + QL+K  +   T    ++
Sbjct: 319 MMALKVIELSLGRRDEDDKDHYANKRLRLAGDLLKDLFRVAFAQLVKDIQYQMTKTYQRK 378

Query: 395 SDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            + Y           + R   +   + + LATG    G+    QL+         +  N 
Sbjct: 379 GEKYTFGNIHRFIRNSIRPDVLTERIEHSLATGAWPGGRTGVSQLL---------DRTNY 429

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
           M  +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+ 
Sbjct: 430 MSTLSHLRRVT-SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITT 488

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
            +P K   ++   L+ LG++P+  V +  PE    V L+G ++G I D    +LV +++ 
Sbjct: 489 AVPEK---EVREYLMKLGIIPIE-VRRPSPE-LWRVYLNGVLIGTIED--GKALVERIKK 541

Query: 565 LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VMN 609
            +  G KI   + + Y +  ++       +Y+ +  GR+ RP               V  
Sbjct: 542 DRRSG-KISDVINVAYYEDIKE-------VYVNSDDGRVRRPLIIVENGKPKLTREHVEA 593

Query: 610 LAAGNIEWIGTFEQVFMDICITMKE--AYPGI--------TTHRELSKTDFLSNLANLIP 659
           +  G ++W    +   ++     +E  AY  +         TH EL     L   A+L+P
Sbjct: 594 VKQGRLKWSDLIKMGIIEYLDAEEEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVP 653

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
            P+ N +PRN Y   M KQ++G    N+R +   + + L  P  P         +  ++ 
Sbjct: 654 YPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVNSRIMKAVGYEDR 713

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P G N +VA+++Y GY+MEDA+I+NK+S ERG A    F++          Y   E  Y 
Sbjct: 714 PAGQNFVVAILAYQGYNMEDAIIINKASIERGLARSTFFRT----------YEAEEKKYL 763

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
           G                        +D+++  D   R    +     L  DGL++  +K+
Sbjct: 764 GGQ----------------------TDRFEIPDPTVRGYRGEKYYRNLDEDGLIFPESKV 801

Query: 840 NERDPMYSYWKESENRYVTCR-------YSGKEEMCVEVVRMSSG------FTEGGSVTP 886
           + +D +    + S  R++  R          + E  V V     G       TE G  T 
Sbjct: 802 DGKDVLIG--RTSPPRFLEERGGLGGMILQERRETSVAVRPSEKGIVDKVIITETGDGT- 858

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRM
Sbjct: 859 KLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRM 918

Query: 947 TIGFL 951
           T+G L
Sbjct: 919 TVGQL 923



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  + A IF GV++YQRL HMV+DK   +
Sbjct: 960  GFKHNGREVMYDGITGKRLVADIFIGVIYYQRLHHMVADKIHAR 1003


>gi|417405955|gb|JAA49663.1| Putative rna polymerase i second largest subunit [Desmodus
           rotundus]
          Length = 1133

 Score =  255 bits (652), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 241/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   ++ +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNVAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSTVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|24429617|gb|AAM18214.1| RNA polymerase III subunit RPC2 [Homo sapiens]
          Length = 1133

 Score =  255 bits (652), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 241/903 (26%), Positives = 391/903 (43%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNNV-----------------LHFVTNGSARFMFSHRKSMCLLGM--------- 280
             ++ +  N+                 +  V    A  + S ++ + ++G          
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTAEHVMAAFG 266

Query: 281 --MQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|149742988|ref|XP_001499030.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Equus
           caballus]
          Length = 1133

 Score =  255 bits (652), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|238908505|ref|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Homo
           sapiens]
 gi|114646705|ref|XP_509335.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 4
           [Pan troglodytes]
 gi|332241690|ref|XP_003270011.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
           [Nomascus leucogenys]
 gi|395744769|ref|XP_003778157.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
           [Pongo abelii]
 gi|397525260|ref|XP_003832592.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
           [Pan paniscus]
          Length = 1075

 Score =  255 bits (652), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 41  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 100

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 101 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 148

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 149 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 208

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 209 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 268

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 269 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 328

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 329 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 381

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 382 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 441

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 442 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 498

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 499 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 547

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 548 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 606

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 607 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 666

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 667 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 723

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 724 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 767

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 768 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 824

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 825 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 882

Query: 949 GFL 951
           G L
Sbjct: 883 GKL 885



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 922  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 981

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 982  SRDGGLRLGEM--ERDCLIGY 1000


>gi|296212778|ref|XP_002752985.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Callithrix
           jacchus]
          Length = 1133

 Score =  255 bits (652), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVPSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|395819924|ref|XP_003783328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Otolemur
           garnettii]
          Length = 1133

 Score =  255 bits (651), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 241/903 (26%), Positives = 391/903 (43%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNNV-----------------LHFVTNGSARFMFSHRKSMCLLGM--------- 280
             ++ +  N+                 +  V    A  + S ++ + ++G          
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVIAAFG 266

Query: 281 --MQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|281338612|gb|EFB14196.1| hypothetical protein PANDA_017492 [Ailuropoda melanoleuca]
          Length = 1058

 Score =  255 bits (651), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 24  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 83

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 84  NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 131

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 132 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 191

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 192 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 251

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 252 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 311

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 312 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 364

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 365 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 424

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 425 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 481

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 482 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 530

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 531 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 589

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 590 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 649

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 650 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 706

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 707 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 750

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 751 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 807

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 808 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 865

Query: 949 GFL 951
           G L
Sbjct: 866 GKL 868



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 905 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 964

Query: 828 GPDGLVYVGAKLNERDPMYSY 848
             DG + +G    ERD +  Y
Sbjct: 965 SRDGGLRLGEM--ERDCLIGY 983


>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
 gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
          Length = 1143

 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 268/1004 (26%), Positives = 425/1004 (42%), Gaps = 183/1004 (18%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD +     DK N    FL   G    H+ SF++ +D  L        L + D+ P 
Sbjct: 29  KKLTD-DVSTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDP- 86

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K + + + + + +  K    P         P E R     YS P  V + ++  
Sbjct: 87  --EFYLKYVDIRVGQRSNASSKDYLTP---------PHECRLRDMTYSAPIYVDIEYTRG 135

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                    E+GR+PIML+S +C L N     +    E P + GGYFIV G EK++ +  
Sbjct: 136 RNIIMHKDVEIGRMPIMLRSNKCILHNSDEKTMARLNECPLDPGGYFIVNGTEKVILVQE 195

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDL--GVYIRSVKRDESATNNVLHFVTNGSARF----- 267
              +N  I     A + + ++ + +    + R  K      N+ ++   N  A       
Sbjct: 196 QLSKNRIIV---EADEKKAIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVPIVV 252

Query: 268 ------MFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQY 309
                 + S  + M L+    S +++            G++TQ  +  + G   K   + 
Sbjct: 253 VLKACGIVSDLEVMQLVCGNDSSYQDIFAVNLEEASKLGLYTQQQALEYIGSKVKTVRRQ 312

Query: 310 DLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
            L  L E +E     +   ++ HL     D+ +K L ++ MT ++   +Q    +D  D 
Sbjct: 313 KLSVLQEGIE----AIATTVIAHLTVAALDFREKALYIAMMTRRVVMAMQNYKMVDDRDY 368

Query: 365 IMLQEIMTGGSL----YLQLLKKE----KSGTSAVLKESDIYAAFRA--------SSIES 408
           +  + +   G L    +  L KK     K+    VLK+ +    + A        ++I S
Sbjct: 369 VGNKRLELAGQLISLLFEDLFKKFNNDFKASIDKVLKKPNRAMEYDALLSINVHSNNITS 428

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-S 466
            ++  ++TGN S  +      M+ +G   +   ++R+ Y+S    + R  S F++ R  S
Sbjct: 429 GLSRAISTGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVS 481

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGM 523
            PR L+   +G +C   TP+G  CGL+ +L     I+   E  P K L  I      LG+
Sbjct: 482 GPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCFI------LGV 535

Query: 524 LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKR 583
             +T +  +       V L+G ++G    +     V + R L+  G KI + + I Y   
Sbjct: 536 EDITLIDSASLHLHYGVYLNGTLIGTT--KFPVKFVSQFRNLRRSG-KISEFISI-YTNS 591

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEW 617
             K       +++ T  GR+ RP++ ++ G                           +E+
Sbjct: 592 HHKA------VHIATDGGRICRPLIIVSNGKSRVTSEHLKELLEGRLVFDDFLKLGLVEY 645

Query: 618 IGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
           +   E+    I +  ++  P IT H E+     L   A LIP P  NQSPRN YQC MGK
Sbjct: 646 LDVNEENDSFIALYEQDIAPEIT-HMEIEPFTVLGACAGLIPYPHHNQSPRNTYQCAMGK 704

Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
           Q +G    N   +    LY +  P  P  +    + +D D  P G NA VA++SY+GYD+
Sbjct: 705 QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAIMSYSGYDI 764

Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
           EDA++LNKSS +RGF      +     L+   N+  T+ +  G+                
Sbjct: 765 EDALVLNKSSIDRGFGRCETRRKTTAVLKRYPNH--TQDIIGGM---------------- 806

Query: 798 QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------NERDPMYS--- 847
            R+       WQ K               LGPDGL  VG KL       N+  P  +   
Sbjct: 807 -RVNENGEPIWQHK--------------SLGPDGLGEVGMKLDSGQIYINKSVPTNASEG 851

Query: 848 --YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
                +S+ R     Y   E   ++ V MS    +   +      +  R  R P +GDKF
Sbjct: 852 VLTQTQSQYRETPVIYRAPEPSHIDQVMMSVSDNDQALIK-----VLLRQNRRPELGDKF 906

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +SR GQKG+C +    ED+PF+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 907 SSRHGQKGVCGIIVQQEDMPFSDQGVVPDIIMNPHGFPSRMTVG 950



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G+NY G + +YSGV G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 984  ILVDNGFNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1043

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E +  SS   E  
Sbjct: 1044 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMTSSDAFE-V 1086

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1087 EVCEKCGLMGY 1097


>gi|410907712|ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Takifugu rubripes]
          Length = 1132

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 241/907 (26%), Positives = 381/907 (42%), Gaps = 149/907 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TP +  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++  D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGQEKV------------ILIQEQLSKNRIIVDQDRKGAVGASVTSS 206

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRK-------SMCLLGM------------------- 280
             ++ +  N++  V  G  RF   H         ++   GM                   
Sbjct: 207 THEKKSRTNMI--VKQG--RFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIGTEDYVM 262

Query: 281 ------MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD- 333
                 ++   +  I TQ  +  + G   + +  +      ++E    +L + IL H+  
Sbjct: 263 ASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMWGGPKKTKMEEARELLASLILTHVPV 322

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS 386
              ++  K + L+ M  ++  + QG  ++D  D    + +   G L    +  L KK  S
Sbjct: 323 KEFNFRAKCIYLAVMVRRVI-LAQGGNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNS 381

Query: 387 GTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
               +  +          D+    R   I + M N ++TGN S  +      M   G   
Sbjct: 382 ELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG--- 434

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 435 VTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 494

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L     I+  +    + ++   L    +  L     S P    +V L+G I+G I D   
Sbjct: 495 LALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPS-VFIVFLNGNILGVIRDH-- 551

Query: 556 TSLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
             LV   R+++  G   E +  S  +               +Y+ +  GR+ RP + +  
Sbjct: 552 QKLVGTFRLMRRAGFINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKK 600

Query: 613 GN--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
           G                           +E++   E+    I +     +   TTH E+ 
Sbjct: 601 GQPMVKNKHIEDLSQGYRNFEDFLHDGLVEYLDVNEENDCQIALYEHMIHKD-TTHLEIE 659

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  
Sbjct: 660 PFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMV 719

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +    + ++ +  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF    ++K+    L 
Sbjct: 720 KTKTIEIIEFEKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNSKCTLR 779

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                Y  +T +  V G M+ A     +      RH + D         R    + L +K
Sbjct: 780 R----YTNQT-FDKVMGPMLDAATRKPI-----WRHNILDADGICSPGERVENKQVLVNK 829

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             P            + P+    +  + +Y  V   Y G  +  +E V +SS   +   +
Sbjct: 830 SMPT---------VTQTPLEGSTQTGQPQYRDVPICYKGSTDSYIEKVMISSNAEDAFLI 880

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 I  R  R P +GDKF+SR GQKG+C +  P ED+PF D+G+ PDI+ NPHG+PS
Sbjct: 881 K-----ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGYPS 935

Query: 945 RMTIGFL 951
           RMT+G L
Sbjct: 936 RMTVGKL 942



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   
Sbjct: 976  IRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPT 1035

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1036 EGRSRDGGLRLGEM--ERDCLIGY 1057


>gi|345326788|ref|XP_001508364.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
           [Ornithorhynchus anatinus]
          Length = 1112

 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 238/892 (26%), Positives = 387/892 (43%), Gaps = 118/892 (13%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 78  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 137

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYFIV G EK++         R+++   R   +     +  +     +++ V
Sbjct: 138 NECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAV 197

Query: 242 -----YIRSVKRDESATNNVLHFVTNGS------ARFMFSHRKSMCLLG-MMQSLHEEGI 289
                Y+R     E     ++ F   G        + + +    M   G  ++   +  I
Sbjct: 198 KQGRFYLRHNTLSEDIPIAII-FKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQI 256

Query: 290 HTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCL-SHM 345
            TQ  +  + G ++ ++++        ++E    +L + IL H+   ++  +  C+ + +
Sbjct: 257 FTQMQALKYIGNKVRRQRMWGGGPKKTKMEEARELLASTILTHVPVKEFNFRAKCIYTAV 316

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES------ 395
             +   + QG  ++D  D    + +   G L    +  L KK  S    +  +       
Sbjct: 317 MVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRA 376

Query: 396 ---DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
              D+    R   I + M N ++TGN S  +      M   G   + + ++R+ Y+S   
Sbjct: 377 AQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALG 429

Query: 453 AVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +    
Sbjct: 430 MMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGP 489

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG- 569
           + ++ + L    +  L     S P    +V L+G I+G I D     LV   R+++  G 
Sbjct: 490 IVKLANNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLVNTFRLMRRAGY 546

Query: 570 --EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAA 612
             E +  S  +               +Y+ +  GR+ RP +                LA 
Sbjct: 547 INEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPAVTDKHMEELAQ 595

Query: 613 GN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
           G            +E++   E+   +I +  +      TTH E+     L   A LIP P
Sbjct: 596 GYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTLLGVCAGLIPYP 654

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
             NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +    + +D +  P 
Sbjct: 655 HHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPA 714

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+     Y  +T +  V
Sbjct: 715 GQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKV 769

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
            G M+ A     +  ++ L           D  G     + +E+K     LV        
Sbjct: 770 MGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---QVLVNKSMPTVT 815

Query: 842 RDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
           + P+       + +Y  V   Y G  +  +E V +SS   +   +      +  R  R P
Sbjct: 816 QIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRP 870

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 871 EIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 922



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 959  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1018

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1019 SRDGGLRLGEM--ERDCLIGY 1037


>gi|320165828|gb|EFW42727.1| polymerase III polypeptide B [Capsaspora owczarzaki ATCC 30864]
          Length = 1138

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 238/890 (26%), Positives = 386/890 (43%), Gaps = 114/890 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P + R     Y+ P  V V +    +        +GR+PIML+S  C L   + A+L + 
Sbjct: 106 PQQCRLRDMTYAAPITVNVEYMRGSQKIVRDNLFIGRMPIMLRSSNCILHGKSRAELTKL 165

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLI-NNRRNHP---IAIKRNAWKNRGLLFS 237
           GE P++ GGYFI+ G EK++         R++I N+R+  P   +       K+R  +  
Sbjct: 166 GECPNDPGGYFIIKGVEKVILIQEQLSKNRMIIENDRKGIPGASVTSSTQERKSRTNVVC 225

Query: 238 DLGVYIRSVKRDESATNNVLHFVTNG---SARFM----FSHRKSMCLLGMMQSLHEEGIH 290
             G +           N V+ F   G       M    F       +        E GI 
Sbjct: 226 KAGRFYLKHNTLSEDINVVILFKALGVETDQEIMQMIGFEDMYQQAIAATFAESIEHGIT 285

Query: 291 TQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHM 345
           TQ+ +  F G ++   K  +     ++V+    +L + IL H+     ++  K L L+ M
Sbjct: 286 TQNQALDFVGSRVRLAKRAWGGARKSKVDEARELLASIILAHVPVHKYNFRPKSLYLALM 345

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK------------ 393
             ++   +   + +D +D    + +   G L   L +      +  LK            
Sbjct: 346 VRRVILALNEALPVDDKDYYGNKRLELAGQLLALLFEDVFKKFNTELKKVTDLTIPKQRA 405

Query: 394 -ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
            + D+   FR   I   +T+ ++TGN +  +      M   G   + + ++R+ Y+S   
Sbjct: 406 TQYDVVKKFRPQIISDGLTHAISTGNWTVKRFK----MDRGG---VTQVLSRLSYISALG 458

Query: 453 AVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+       
Sbjct: 459 MMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDDEESN 518

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
           +A++ +    +  + +        +++ +V L+G ++G  +    T LV   RML+  G 
Sbjct: 519 IARL-AFNFGVEDINVLSAEDLTRDESYLVFLNGLLLGVTIH--PTILVRAFRMLRRDG- 574

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP----------VMN----------- 609
           ++   L I    R          +Y+ +  GR+ RP          V N           
Sbjct: 575 RLSHFLSICPNDRQR-------CVYIASDGGRVCRPYIIVDKNGPKVTNTHLERLAQKVL 627

Query: 610 -----LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
                L  G IE++   E+   +I +   E  P  TTH E+     L   A +IP P  N
Sbjct: 628 RFDDFLKLGLIEYLDVNEENGANIAMYESEIKP-YTTHLEIEPFTILGVCAGIIPYPHHN 686

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRN YQC MGKQ +GT   N   +    LY L  P  P  +    + +D  N P G N
Sbjct: 687 QSPRNTYQCAMGKQAIGTIAANQYVRFDTLLYTLLYPQRPMVQTRTIELIDFHNMPAGQN 746

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           A VAV+SY+GYD+EDA+ILN++S +RGF    +++   + +++  N              
Sbjct: 747 ACVAVMSYSGYDIEDALILNQASLDRGFGRCMVYRKQTVSIKTYPN-------------- 792

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
                +   +V   R R   S +    D   ++   +  E       LV     +N  +P
Sbjct: 793 ----MLVDRIVAPTRNRDD-SSRLAKFDVLDQEGICRPGERVENGSTLVLKETPVNTSNP 847

Query: 845 M---YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
           +   ++   + +  YV+  Y G  E  V+ V +++   +   +      I  R  R P V
Sbjct: 848 IQDPHNAAVQYKPAYVS--YKGPCEGVVDKVLLTNNSEDNHLIK-----ILLRTTRRPEV 900

Query: 902 GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GDKF+SR GQKG+C +    ED+PF+D G+ PDI+ NPHGFPSRMT+G L
Sbjct: 901 GDKFSSRHGQKGVCGLIVRQEDMPFSDIGICPDIIMNPHGFPSRMTVGKL 950



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 2/107 (1%)

Query: 742  ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
            ++ K  Y   F    +     I +E G+NY G + + SG+ G  + A IFFG V+YQ+L+
Sbjct: 961  LIGKFHYGTAFGGDKVVDMSKILVEHGFNYAGKDFVTSGITGEPLSAYIFFGPVYYQKLK 1020

Query: 802  HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            HMV DK   +    R    +   +    DG + +G    ERD +  Y
Sbjct: 1021 HMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM--ERDCLIGY 1065


>gi|348506052|ref|XP_003440574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
           [Oreochromis niloticus]
          Length = 1040

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 241/897 (26%), Positives = 380/897 (42%), Gaps = 147/897 (16%)

Query: 140 VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
            YS P  V + ++   +        +GR+PIML+S  C L   TP +  +  E P + GG
Sbjct: 16  TYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGG 75

Query: 200 YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSVKRDESATNN 255
           YFIV G EK+            I I+    KNR ++  D    +G  + S   ++ +  N
Sbjct: 76  YFIVKGQEKV------------ILIQEQLSKNRIIVEQDRKGAVGASVTSSTHEKKSRTN 123

Query: 256 VLHFVTNGSARFMFSHRK-------SMCLLGM-------------------------MQS 283
           ++  V  G  RF   H         ++   GM                         ++ 
Sbjct: 124 II--VKQG--RFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIGTEESVMASFAPSLEE 179

Query: 284 LHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
             +  I TQ  +  + G   + +  +      ++E    +L + IL H+     ++  K 
Sbjct: 180 CQKAQIFTQTQALRYLGNKVRRQRMWGGPKKTKMEEARELLASLILTHVPVKEFNFRAKC 239

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-----EKSGTSA 390
           + L+ M  ++  + QG  ++D  D    + +   G L    +  L KK     +K     
Sbjct: 240 IYLAVMVRRVI-LAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNAELKKIADQI 298

Query: 391 VLKES----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
           + K+     D+    R   I + M N ++TGN S  +      M   G   + + ++R+ 
Sbjct: 299 IPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLS 351

Query: 447 YMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
           Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+ 
Sbjct: 352 YISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 411

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
            +    + ++   L    +  L     S P    +V L+G I+G I D     L+   R+
Sbjct: 412 DMEDGPIIKLAFNLGVEDVNLLCGEELSYPS-VFLVFLNGNILGVIRDH--QKLINTFRL 468

Query: 565 LKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------N 614
           ++  G   E +  S  +               +Y+ +  GR+ RP + +  G       +
Sbjct: 469 MRRAGFINEFVSISTNLSD-----------RCVYISSDGGRLCRPYIIVKKGVPMVKNKH 517

Query: 615 IEWIGTFEQVFMDICITMKEAYPGI------------------TTHRELSKTDFLSNLAN 656
           IE +    + F D        Y  +                  TTH E+     L   A 
Sbjct: 518 IEDLSQGYRTFEDFLHEGLVEYLDVNEENDCQIALYEYMINKDTTHLEIEPFTLLGVCAG 577

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +    + +D 
Sbjct: 578 LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDF 637

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L      Y  +T
Sbjct: 638 EKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRR----YTNQT 693

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
            +  V G M+ A     +      RH + D         R    + L +K  P       
Sbjct: 694 -FDKVMGPMLDAATRKPI-----WRHSILDADGICSPGERVENKQVLVNKSMPT------ 741

Query: 837 AKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
                + P+    +  + +Y  V   Y G  +  +E V +SS   +   +      I  R
Sbjct: 742 ---VTQTPLEGSTQPGQPQYRDVPISYKGSTDSYIEKVMISSNAEDAFLIK-----ILLR 793

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             R P +GDKF+SR GQKG+C +  P ED+PF D+G+ PDI+ NPHG+PSRMT+G L
Sbjct: 794 QTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGYPSRMTVGKL 850



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 887 GYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 946

Query: 828 GPDGLVYVGAKLNERDPMYSY 848
             DG + +G    ERD +  Y
Sbjct: 947 SRDGGLRLGEM--ERDCLIGY 965


>gi|212223363|ref|YP_002306599.1| DNA-directed RNA polymerase subunit B [Thermococcus onnurineus NA1]
 gi|212008320|gb|ACJ15702.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus onnurineus
           NA1]
          Length = 1120

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 248/960 (25%), Positives = 413/960 (43%), Gaps = 145/960 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +D G+   + +   I+ +I    +K   ++    E +   G         YP
Sbjct: 31  HLDSYNAFIDYGMQQVINEFGGIKPDIPDFEVKFGKIRLGEPEFQEAQG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +    +G A       +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 87  MDARIRNLTYSAPLYLELIPVVNGIAQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLG 146

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL--FSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++R+  +NR +   FS    Y R++   
Sbjct: 147 EDPKDPGGYFIINGSERVI-VSIEDLAPNKTLVERDERQNRIIAKCFSYRHGY-RALITV 204

Query: 250 ESATNNVLH-----------FVTNGSARFMFSHRKSMCLLG----MMQSLHE-----EGI 289
           E   + +L+           FV    A  + S ++ +  +     + Q L +       I
Sbjct: 205 ERRKDGILYVNIPNVPRPVKFVYVMRALGLESDKEIVEAVSDDPRIQQVLFDNLEDASDI 264

Query: 290 HTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLS 343
            ++ ++  + G++    +  +Y LR        ++++ N +LPH+     D   K   L 
Sbjct: 265 MSREEALDYIGKLALPGQPKEYRLRR------AEHIIDNNLLPHMGVEEKDRRAKAYYLG 318

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLKE 394
            M  K+  +  G+   D +D    + +   G L        + QL+K  +   T    ++
Sbjct: 319 MMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQRK 378

Query: 395 SDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            + Y           + R   +   + + LATG    G+    QL+         +  N 
Sbjct: 379 GERYTFENIQRFVRNSIRPDVLSERIEHALATGAWPGGRTGVSQLL---------DRTNY 429

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
           M  +SH R V      ++    E R L    WG ICP  TP+G  CGL+ +L    QI+ 
Sbjct: 430 MSTLSHLRRVT-SPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITT 488

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
            IP +   ++   L  LG++P+     S+  +   V L+G ++G + D     LV ++R 
Sbjct: 489 GIPEE---EVRDYLNRLGVVPIEEKRPSL--ELWRVYLNGVLIGTVED--GERLVKRIRA 541

Query: 565 LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VMN 609
            +  G +I   + +   +  E        +Y+ +  GR+ RP               V  
Sbjct: 542 DRRSG-RISDVINVAIYQDEE-----VKEIYVNSDDGRVRRPLIIVENGQPKLTREHVEG 595

Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGITT----------HRELSKTDFLSNLANLIP 659
           +  G + W    +   ++     +E    + T          H EL     L   A+L+P
Sbjct: 596 IKNGTLTWSDLIKMGVIEYLDAEEEENAYVATWPWEVTAEHTHLELMPAAILGIPASLVP 655

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
            P+ N +PRN Y   M KQ++G    N+R +   + + +  P  P         +  +  
Sbjct: 656 YPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHFMHYPQVPLVNSRIMKAVGFEER 715

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P G N +VAV+SY GY+MEDA+I+NK+S ERG A    F++   E +    Y G +T   
Sbjct: 716 PAGQNFVVAVLSYQGYNMEDAIIMNKASIERGLARSTFFRTYEAEEK---RYLGGQTDRF 772

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSD-------KWQTKDYF-GRDPANKALEDKLGPDG 831
            V    +Q   + G  +Y   RH+  D       K + KD   GR    + LE++ G  G
Sbjct: 773 EVPDPTIQG--YLGEKYY---RHLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGG 827

Query: 832 LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
           ++                   E R  +      E+  V+ V +    TE G  T     +
Sbjct: 828 IIL-----------------QERRETSVAVRPSEKGIVDKVII----TETGDGT-KLVKV 865

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             R  R P  GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT+G L
Sbjct: 866 TVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQL 925



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 962  GFKHSGREVMYDGITGRRLEADIFVGVIYYQRLHHMVADKMHAR 1005


>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
           KOD1]
 gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
           KOD1]
          Length = 1123

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 245/967 (25%), Positives = 416/967 (43%), Gaps = 159/967 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +D GL   V +   +  +I    +K   ++    E +   G         YP
Sbjct: 34  HLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQG----QRRPLYP 89

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +    +G         +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 90  MDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLG 149

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR--GLLFSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++R+  +N+    +FS    Y R++   
Sbjct: 150 EDPKDPGGYFIINGSERVI-VSIEDLAPNKTLVERDERQNKVVAKVFSYRHGY-RALITV 207

Query: 250 ESATNNVLHFVTNG---SARFMFSHRKSMCLLG---MMQSLHEE---------------G 288
           E   + +L+          +F++  R ++ LL    +++++ ++                
Sbjct: 208 ERKKDGILYVTIPNVPKPVKFVYVMR-ALGLLTDKEIVEAVSDDPRIQQVLFDNLEDASD 266

Query: 289 IHTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCL 342
           I TQ ++  + G++    +  +Y LR        ++++ N +LPH+    ++   K   L
Sbjct: 267 ISTQEEALDYIGRLALPGQPKEYRLRR------AEHIIDNNLLPHMGVDPENRRAKAYYL 320

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLK 393
             M  K+  +  G+   D +D    + +   G L        + QL+K  +   T    +
Sbjct: 321 GMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQR 380

Query: 394 ESDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           + + Y           + R   +   + + LATG+   G+    QL+         +  N
Sbjct: 381 KGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLL---------DRTN 431

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            M  +SH R V      ++    E R L    WG ICP  TP+G  CGL+ +L    QI+
Sbjct: 432 YMSTLSHLRRVT-SPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQIT 490

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKL 562
             IP +   ++   L+ +G++P+    +  P   L  V L+G ++G + D     LV ++
Sbjct: 491 TGIPER---EVREYLMKMGVVPIE---ERRPAPGLYRVYLNGVLIGTVED--GRKLVERI 542

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------V 607
           R  +  G KI   + +   +  E        +Y+ +  GR+ RP               V
Sbjct: 543 RADRRAG-KISDVINVALYEDEE-----VKEVYINSDDGRVRRPLIVVENGKPKLTREHV 596

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT----------HRELSKTDFLSNLANL 657
             +  G + W        ++     +E    + T          H EL     L   A+L
Sbjct: 597 EGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASL 656

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           +P P+ N +PRN Y   M KQ++G    N+R +   + + +  P  P         +  +
Sbjct: 657 VPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFE 716

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
           + P G N +VAV+SY GY+MEDA+I+NK+S ERG A    F++   E +    Y G +  
Sbjct: 717 DRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEK---RYLGGQKD 773

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA 837
              V    +Q   + G  +Y   RH                        L  DGL++  +
Sbjct: 774 NFEVPSPNIQG--YLGEKYY---RH------------------------LDEDGLIFPES 804

Query: 838 KLNERDPMYSYWKESENRYVTCRYS-------GKEEMCVEVVRMSSG------FTEGGSV 884
           K+  +D +    + S  R++  + S       G+ E  V V     G       TE G  
Sbjct: 805 KVEGKDVLVG--RTSPPRFIEEQSSLGSMVLQGRRETSVTVRPSEKGVVDKVIVTETGDG 862

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
           T     +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PS
Sbjct: 863 T-KLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPS 921

Query: 945 RMTIGFL 951
           RMT+G L
Sbjct: 922 RMTVGQL 928



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 965  GFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHAR 1008


>gi|223478302|ref|YP_002582840.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
 gi|214033528|gb|EEB74355.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
          Length = 1122

 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 244/959 (25%), Positives = 418/959 (43%), Gaps = 143/959 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ GL   + +   ++ +I    +K   ++  + EP              YP
Sbjct: 33  HLDSYNAFIEHGLQEVINEFGGVKPDIPNFEVKFGKIR--LGEPIFQEAQG--QRRPLYP 88

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +    +G         +G +P+MLKSK C L  L+  +LIE G
Sbjct: 89  MDARIRNLTYSAPLFLELIPVVNGIEQEPVEVRIGELPLMLKSKACRLYGLSDEELIELG 148

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR--GLLFSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++R+  +N+    +FS    Y R++   
Sbjct: 149 EDPKDPGGYFIINGSERVI-VSIEDLAPNKTLVERDERQNKVVAKVFSYRHGY-RALITV 206

Query: 250 ESATNNVLHF-VTN--GSARFMFSHRKSMCLLG---MMQSLHEE---------------G 288
           ES  + +L+  + N     +F++  R ++ LL    +++++ E+                
Sbjct: 207 ESRKDGILYVSIPNVPKPVKFVYVMR-ALGLLSDKEIVEAISEDPRIQQVLFNNLEDASD 265

Query: 289 IHTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCL 342
           I TQ ++  F G++    +  +Y LR        ++++ N +LPH+    ++   K   L
Sbjct: 266 IRTQEEALDFIGRLSLPGQPKEYRLRR------AEHIIDNNLLPHMGVEPENRKAKAYYL 319

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLK 393
             M  K+  +  G+   D +D    + +   G L        + QL+K  +   T    +
Sbjct: 320 GMMALKVLELALGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQR 379

Query: 394 ESDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           + + Y           + R   +   + + LATG+   G+    QL+  + ++       
Sbjct: 380 KGERYTFENIQRFVRNSVRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYI------- 432

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
               +SH R V      ++    E R L    WG ICP  TP+G  CGL+ +L    QI+
Sbjct: 433 --STLSHLRRVT-SPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT 489

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKL 562
             IP +   ++   L+ LG++P+    +  P   L  V L+G ++G I D    +LV  +
Sbjct: 490 TGIPEE---EVREYLLKLGVVPIE---ERRPSPGLYRVYLNGVLIGTIED--GKALVQTI 541

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------V 607
           R  +  G KI   + +   +  +        +Y+ +  GR+ RP               V
Sbjct: 542 RSDRRAG-KISDVINVAIYEEED-----VREIYVNSDDGRVRRPLIIVENGKPKLTREHV 595

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT----------HRELSKTDFLSNLANL 657
             +  G +EW        ++     +E    + T          H EL     L   A+L
Sbjct: 596 EAIKNGQLEWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASL 655

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           +P P+ N +PRN Y   M KQ++G    N+R +   + + +  P  P         +  +
Sbjct: 656 VPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFE 715

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G N +VAV+SY GY+MEDA+I+NK+S ERG A    F++   E E      G    
Sbjct: 716 ERPAGQNFVVAVLSYQGYNMEDAIIINKASIERGLARSTFFRTY--EAEEKRYLGGQMDR 773

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRH----MVSDKWQTKDYF-GRDPANKALEDKLGPDGL 832
           +   D ++   + + G  +Y+ L          K + KD   GR    + LE++ G  G+
Sbjct: 774 FEKPDPTI---KGYLGDRYYRNLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGI 830

Query: 833 VYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
                               E R  +      E+  V+ V +    TE G  T     + 
Sbjct: 831 AL-----------------QERRETSVAVRPSEKGIVDKVII----TETGDGT-KLVKVT 868

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKFASR GQKG+  +  P ED+P+T++G+VPD++ NPHG PSRMT+G L
Sbjct: 869 VRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTENGIVPDLIVNPHGIPSRMTVGQL 927



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 964  GFKHTGREVMYDGITGRRLEADIFVGVIYYQRLHHMVADKMHAR 1007


>gi|402887513|ref|XP_003907136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
           [Papio anubis]
          Length = 1133

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 241/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y L  P  P  +   
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQNRIDTLMYLLAYPQKPMVKTKT 724

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940

Query: 949 GFL 951
           G L
Sbjct: 941 GKL 943



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 980  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058


>gi|409095097|ref|ZP_11215121.1| DNA-directed RNA polymerase subunit B [Thermococcus zilligii AN1]
          Length = 1120

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 251/962 (26%), Positives = 417/962 (43%), Gaps = 149/962 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +D GL   +++   ++ +I    L++   K  + EP              YP
Sbjct: 31  HLDSYNAFVDYGLQEVIDEFGGVKPDI--PNLEVKFGKIRVGEPVFQEAQG--QRRPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +    +G         +G +PIMLKSK C L  L+  +L++ G
Sbjct: 87  MDARIRNLTYSAPLFLELIPVVNGIEQEPVEARIGELPIMLKSKICRLHGLSDGELVKLG 146

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGL--LFSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++R+  + R +  +FS    Y R++   
Sbjct: 147 EDPKDPGGYFIINGSERVI-VSIEDLAPNRTLVERDERQERVIAKVFSYRHGY-RALITV 204

Query: 250 ESATNNVLHFV---TNGSARFMFSHRKSMCLLG-----------------MMQSLHEEG- 288
           E   + +L+      +   +F++  R ++ LL                  ++ +L +   
Sbjct: 205 ERRKDGILYVTIPNVSKPVKFVYVMR-ALGLLSDREIVEAVSDDPRIQQILLDNLEDASD 263

Query: 289 IHTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCL 342
           I TQ D+  + G++    +  +Y LR        ++++ N +LPH+    ++   K   L
Sbjct: 264 IRTQEDALDYIGKLSLPGQPKEYRLRR------AEHIIDNNLLPHMGVGPENRKAKAYYL 317

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLK 393
             M  K+  +  G+   D +D    + +   G L        + QL+K  E   T    +
Sbjct: 318 GMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMEYQMTKTYQR 377

Query: 394 ESDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           + + Y           + R   +   + + LATG+   G+    QL+         +  N
Sbjct: 378 KGERYTFQNIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLL---------DRTN 428

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            M  +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+
Sbjct: 429 YMSTLSHLRRVT-SPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQIT 487

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKL 562
             +P +       V V L  L + P+ +  P   L  V L+G ++G +  +    LV ++
Sbjct: 488 TGLPEE------KVRVYLEKLGIVPIEERRPAPGLYRVYLNGVLIGTV--EKGRELVERI 539

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------V 607
           +  +  G +I   + +   +      G    +Y+ +  GR+ RP               V
Sbjct: 540 KTDRRAG-RISDVINVALYEE-----GDVREIYINSDDGRVRRPLIIVENGKPKLTREHV 593

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKE--AY--------PGITTHRELSKTDFLSNLANL 657
             +  G + W        ++     +E  AY         G  TH EL     L   A+L
Sbjct: 594 EGIKNGTLAWSDLIRMGVIEYLDAEEEENAYVATWPWEVTGEHTHLELMPAAILGIPASL 653

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           +P P+ N +PRN Y   M KQ++G    N+R +   + + L  P  P         +  +
Sbjct: 654 VPYPEHNAAPRNTYGAGMAKQSLGLGAANFRLRIDTRGHLLHYPQVPLVNSRIMKAVGFE 713

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET- 776
             P G N +VAV+SY GY+MEDA+I+NK+S ERG      F++   E +    Y G +T 
Sbjct: 714 ERPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLGRSTFFRTYEAEEK---RYLGGQTD 770

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRH----MVSDKWQTKDYF-GRDPANKALED--KLGP 829
            +   D ++   + + G  +Y+ L          + + KD   GR    + LE+  +LG 
Sbjct: 771 RFEKPDPTI---KGYLGDRYYRNLDEDGIIFPESRVEGKDVLVGRTSPPRFLEEQGRLG- 826

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
                 G  L ER            R  +      EE  V+ V +    TE G  T    
Sbjct: 827 ------GIALQER------------RETSVAARPSEEGIVDKVII----TETGDGT-KLV 863

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT+G
Sbjct: 864 KVTVRDLRIPELGDKFASRHGQKGVVGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 923

Query: 950 FL 951
            L
Sbjct: 924 QL 925



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E +Y G+ G  ++A+IF GV++YQRL HMV+DK   +
Sbjct: 962  GFKHNGREILYDGITGRRLEAEIFVGVIYYQRLHHMVADKMHAR 1005


>gi|402887515|ref|XP_003907137.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
           [Papio anubis]
          Length = 1075

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 241/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 41  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 100

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 101 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 148

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 149 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 208

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 209 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 268

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 269 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 328

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
           +  +          D+    R   I + M N ++TGN S  +      M   G   + + 
Sbjct: 329 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 381

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 382 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 441

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 442 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 498

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 499 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 547

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 548 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 606

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y L  P  P  +   
Sbjct: 607 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQNRIDTLMYLLAYPQKPMVKTKT 666

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 667 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 723

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 724 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 767

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 768 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 824

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 825 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 882

Query: 949 GFL 951
           G L
Sbjct: 883 GKL 885



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 922  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 981

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 982  SRDGGLRLGEM--ERDCLIGY 1000


>gi|255713708|ref|XP_002553136.1| KLTH0D09812p [Lachancea thermotolerans]
 gi|238934516|emb|CAR22698.1| KLTH0D09812p [Lachancea thermotolerans CBS 6340]
          Length = 1144

 Score =  253 bits (646), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 269/1006 (26%), Positives = 423/1006 (42%), Gaps = 187/1006 (18%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L        L + D+ P 
Sbjct: 30  KKLTDE-INTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDP- 87

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K + + +   + S  K    P         P E R     YS P  V + ++  
Sbjct: 88  --EFYLKYVDIRVGHRSTSSSKDYIVP---------PHECRLRDMTYSAPVYVDIEYTRG 136

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                    E+GR+PIML+S +C L   +   + +  E P + GGYFIV G EK++ +  
Sbjct: 137 RNIIMHRDVEIGRMPIMLRSNKCILNGASEKDMAKINECPLDPGGYFIVNGTEKVILVQE 196

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDL--GVYIRSVKRDESATNNVLHFVTNGSARF----- 267
              +N  I     A + + ++ + +    + R  K      N+ ++   N  A       
Sbjct: 197 QLSKNRIIV---EADEKKAIVQASVTSSTHERKSKTYVITKNDKIYLKHNSIAEEVPIVL 253

Query: 268 ------MFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQY 309
                 + S  + M L+    S +++             I+TQ  +  + G   K   + 
Sbjct: 254 VLKACGIVSDLEIMQLVCGNDSSYQDIFAVNFEEVAKMKIYTQQQALEYIGSKVKTVRRQ 313

Query: 310 DLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
            L  L E +E     +   ++ HL     D+ +K L ++ MT ++   +     +D  D 
Sbjct: 314 KLSTLQEGIE----AIATTVIAHLTVEALDFREKALYIAVMTRRVVMAMHNPKMVDDRDY 369

Query: 365 IMLQEIMTGGSL----YLQLLKKE----KSGTSAVLKESDIYAAFRASSIESAMTNFLAT 416
           +  + +   G L    +  L KK     K+    VLK+ +     RA   ++ ++  + +
Sbjct: 370 VGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPN-----RAMEYDALLSINVHS 424

Query: 417 GNVSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS- 465
            N+S+G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  
Sbjct: 425 NNISSGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKV 481

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLG 522
           S PR L+   +G +C   TP+G  CGL+ +L     I+   E  P K L  +      LG
Sbjct: 482 SGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKKLCFL------LG 535

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLK 582
           +  +  V          V L+G IVG I  +  T  V   R L+  G K+ + + I Y  
Sbjct: 536 VECINVVDSDSLHLNYCVYLNGTIVGVI--RFPTKFVSHFRNLRRSG-KVSEFISI-YTN 591

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IE 616
             +K       +++ T  GR+ RP++ +  G                           +E
Sbjct: 592 SHQKA------VHIATDGGRICRPLIIVNEGKSLVTAQHLRQLLDGHLQFDDFLKLGLVE 645

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           ++   E+    I +  ++  P IT H E+     L  +A LIP P  NQSPRN YQC MG
Sbjct: 646 YLDVNEENDSFIALYERDLEPRIT-HLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMG 704

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ +G    N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD
Sbjct: 705 KQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYD 764

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           +EDA++LNKSS +RGF      + +   L+   N+  T+ M  G+               
Sbjct: 765 IEDALVLNKSSIDRGFGRCETRRKLTTVLKRYPNH--TQDMVGGM--------------- 807

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------------NERD 843
             R+       WQ K               LGPDGL  VG K+             N  D
Sbjct: 808 --RVDESGEPIWQHK--------------PLGPDGLGEVGMKVESGQIYVNKSVPTNASD 851

Query: 844 PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
            + +   +++ R     Y   E   ++ V MS    +   +      +  R  R P +GD
Sbjct: 852 SVLT-QSQAQYRETPVVYRAPEPSHIDQVMMSVSENDQALIK-----VLLRQNRRPELGD 905

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           KF+SR GQKG+C +    EDLPF D G+VPDI+ NPHGFPSRMT+G
Sbjct: 906 KFSSRHGQKGVCGIIVNHEDLPFNDQGVVPDIIMNPHGFPSRMTVG 951



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +  G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 985  ILVNHGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1044

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1045 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1087

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1088 DVCNKCGLMGY 1098


>gi|365986765|ref|XP_003670214.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
 gi|343768984|emb|CCD24971.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
          Length = 1154

 Score =  253 bits (645), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 247/969 (25%), Positives = 411/969 (42%), Gaps = 166/969 (17%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   E Y K + + + K + S  +    P   
Sbjct: 67  HLDSFNYFVDVDLKKIIKANQLILSDVDP---EFYLKYVDIRVGKKSTSSARDYLTP--- 120

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+GR+PIML+S +C L     
Sbjct: 121 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCTLYGADE 174

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
            Q+ +  E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    +
Sbjct: 175 KQMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 231

Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
            R  K      N  ++   N  A  +            S  + M L+    S +++    
Sbjct: 232 ERKSKTYVITKNGKIYLKHNSIAEEIPIVIVLKACGIVSDLEIMQLVCGNDSSYQDIFAV 291

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    ++TQ  +  F G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 292 NLEEAAKLNLYTQQQALEFIGAKVKTMRRQKLSILQEGIE----AIATTVVAHLTVEALD 347

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS----LYLQLLKKEKSGTSA 390
           + +K L ++ MT ++   +     +D  D +  + +   G     L+  L KK  S   A
Sbjct: 348 FREKALYMAMMTRRVVMAIHNPKMVDDRDYVGNKRLELAGQMVSLLFEDLFKKFNSDFKA 407

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMAEN 441
            + +  +    RA   ++ ++  + + N+++G N  +           M+ +G   +   
Sbjct: 408 TIDKV-LEKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAG---VTHV 463

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L   
Sbjct: 464 LSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALM 523

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+     + + ++  VL   G+  ++ +  +       V L+G ++G    +     V
Sbjct: 524 THITSDDEEEPIKRVCYVL---GVEDISLIDSASLHLNFGVYLNGTLIGTT--RFPIKFV 578

Query: 560 PKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN----- 614
            + R L+  G K+ + + I Y    +K       +++ T  GR+ RP++ +  G      
Sbjct: 579 SQFRHLRRTG-KVSEFISI-YTNSHQKA------VHIATDGGRICRPLIIVTNGKSHVTA 630

Query: 615 ---------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSN 653
                                +E++   E+    I +  K+     +TH E+     L  
Sbjct: 631 DHLRSLLEGKLVFDDFLKLGLVEYLDVNEENDSFIALYEKDINVA-STHMEIEPFTVLGA 689

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
           +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    + 
Sbjct: 690 VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIEL 749

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
           +D D  P G NA VAV+SY+GYD+EDA+++NK+S +RGF      +     L+   N+  
Sbjct: 750 IDYDKLPAGQNATVAVMSYSGYDIEDALVINKASIDRGFGRCETRRKTTTILKRYPNH-- 807

Query: 774 TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLV 833
           T+ + SG+                 R+       WQ K               LGPDGL 
Sbjct: 808 TQDIISGM-----------------RVDENGDPIWQHK--------------ALGPDGLG 836

Query: 834 YVGAKL-------------NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
            VG KL             N    + +  ++S+ R     Y   E   ++ V MS    +
Sbjct: 837 EVGMKLDSGQIYINKAVPTNPTSDLNAAPEQSQYRDTPVMYRAPEPSHIDQVMMSVSDND 896

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
              +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+VPDI+ NPH
Sbjct: 897 QALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFNDQGIVPDIIMNPH 951

Query: 941 GFPSRMTIG 949
           GFPSRMT+G
Sbjct: 952 GFPSRMTVG 960



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 994  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1053

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1054 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1096

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1097 DVCDECGLMGY 1107


>gi|145592515|ref|YP_001154517.1| DNA-directed RNA polymerase subunit B [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284283|gb|ABP51865.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
           polymerase, subunit B' [Pyrobaculum arsenaticum DSM
           13514]
          Length = 1127

 Score =  253 bits (645), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 255/959 (26%), Positives = 405/959 (42%), Gaps = 139/959 (14%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           L +  I SF+  LD+ L   VED   ++ EI G  LKL + K  +  P++          
Sbjct: 37  LASHQIKSFNDFLDKKLPRIVEDFKVVDTEIKG--LKLVLEKIEVGWPRIKESDGSESL- 93

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
             YP EAR   + YS P  +T     D +   T T  +G +PIM+KSKRC+L  L P++ 
Sbjct: 94  -IYPMEARLRNATYSAPLYLTAVLYVDDEPYATETFYIGELPIMVKSKRCNLTRLRPSEY 152

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS-DLGVYIRSV 246
            +R E P ++GGYFI+ G E+++    +   + PI  K +    + L  +   G+  RS 
Sbjct: 153 PKRFEDPQDFGGYFIINGSERVIISQEDLVADRPIYDKGDKPSVKFLAKTISTGIGYRST 212

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
              E   + V+ + T  +          M  LG+     E+ +    D      ++    
Sbjct: 213 LTVELNKDGVI-YATLSAIPVKIPFPIYMKALGL--ETDEDVVKAVSDDPDIQKELLPSL 269

Query: 307 LQYDLRHLNEVEICDY--------------------MLTNCILPHL-----DDYWDKFLC 341
           +  +   +   +  DY                    +L    LPHL     D+   + + 
Sbjct: 270 VVANQIAITREDALDYIGGKVAVGQPRPVRVERALQLLDRYFLPHLGTTVPDEKKQQEIR 329

Query: 342 LSHMTCKLFHVVQGMVQL-------DSEDSIMLQEIMTGGSL--------YLQLLKKEKS 386
           L      L  +V+G+V+L       D +D +  + +   G L        + QLL++ +S
Sbjct: 330 LKK-ALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQLLQELRS 388

Query: 387 GTSAVLKESDI---YAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
                     I       R   I   +   LATGN   GK    Q++  + ++     + 
Sbjct: 389 QLEKYYARGRIPHLQTIVRPDIITERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLR 448

Query: 444 RM-----RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           R+     R   HF A               R L    WG +C V TP+G   GL+ +L  
Sbjct: 449 RVVSSLSRTQPHFEA---------------RDLHPTQWGRLCAVETPEGQNVGLVKNLAL 493

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
             +I+  +    + Q+   L+  G++P+    +     A  V L+GR++G  +      L
Sbjct: 494 LAEITTGVDENDVEQM---LLQQGVVPILKAREEGVRGA-EVYLNGRLIG--IHPEPEEL 547

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLK-----RPEKGMGLYPGLYLFTGPGRMLRPVMN---- 609
           V  +R L+  G KI   + I YL        + G    P L +  G  ++ + ++     
Sbjct: 548 VKTVRSLRRQG-KISDEINIAYLNGVVYVNSDGGRIRRPLLVVEDGKLKLTKDIVERVKR 606

Query: 610 --------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                   L  G +E++   E+    I +   E      TH E+  +  L  +A++IP  
Sbjct: 607 GELTWDDLLKMGVVEYLDADEEENAHIAVD-PEGDLSNYTHVEIIPSSILGAIASIIPFL 665

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           + NQSPRN Y+  M KQ++G P  N+ Y+   + + L  P  P       + +     P 
Sbjct: 666 EHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELVGYSKRPA 725

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM-YSG 780
           G NA+VA+++YTGY++EDA+ILNK+S ERG     +F+S+F      Y  Y TE   Y G
Sbjct: 726 GQNAVVALLTYTGYNIEDAVILNKASVERG-----MFRSVF------YRTYETEEQRYPG 774

Query: 781 VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK-- 838
            +   ++                + D    K Y G +  +   ED + P   VYV +   
Sbjct: 775 GEEDKIE----------------IPDS-SVKGYRGPEAYSHLDEDGIAPPE-VYVSSSEV 816

Query: 839 -LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIG 892
            + +  P   Y      R +  R     +  V V R   G  +   VT +        + 
Sbjct: 817 LIGKTSPPRFYTTLETERILKER----RDASVAVRRGEKGIVDRVIVTESPEGNKLVKVR 872

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKFASR GQKG+  +    ED+PFT+ G+VPDI+ NPH  PSRMT+  L
Sbjct: 873 LRELRIPELGDKFASRHGQKGVVGMLLRQEDMPFTEEGIVPDIIVNPHALPSRMTVAQL 931



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY + G E MYSG+ G  + A IF G+V+YQ+L HMV+DK   +
Sbjct: 965  LKLGYKWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHAR 1011


>gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit B [Pyrobaculum aerophilum str.
           IM2]
 gi|18159514|gb|AAL62934.1| DNA-directed RNA polymerase subunit B (rpoB) [Pyrobaculum
           aerophilum str. IM2]
          Length = 1127

 Score =  253 bits (645), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 251/954 (26%), Positives = 402/954 (42%), Gaps = 137/954 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
            I SF+  LD+ L   VED   +E EI G  LKL + K  +  P++            YP
Sbjct: 41  QIKSFNDFLDKKLPKIVEDFKVVETEIKG--LKLVLEKIEVGWPRIKESDGSESL--IYP 96

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR   + YS P  +T     D +   T T  +G +PIM+KSKRC+L  L P++  +R 
Sbjct: 97  MEARLRNATYSAPLYLTATLYVDDEPYATETFYIGELPIMVKSKRCNLTRLRPSEYAKRF 156

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS-DLGVYIRSVKRDE 250
           E P ++GGYFI+ G E+++    +   + PI  K +    R L  +   G+  RS    E
Sbjct: 157 EDPQDFGGYFIINGSERVIISQEDLVADRPIYDKGDKPSVRFLAKTISTGIGYRSTLTVE 216

Query: 251 SATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYD 310
              + V+ + T  +          M  LG+     E+ +    D      ++    +  +
Sbjct: 217 LNKDGVI-YATLSAMPVKIPFPIYMKALGL--ETDEDVVKAVSDDPEIQKELLPSLIAAN 273

Query: 311 LRHLNEVEICDY--------------------MLTNCILPHL-----DDYWDKFLCLSHM 345
              +   +  DY                    +L    LPHL     D+   + + L   
Sbjct: 274 QIAITREDALDYIGGKVAVGQPRPVRIERALQLLDRYFLPHLGTTVPDEKKQQEIRLKK- 332

Query: 346 TCKLFHVVQGMVQL-------DSEDSIMLQEIMTGGSL-----------YLQLLKKEKSG 387
              L  +V+G+V+L       D +D +  + +   G L           +LQ LK +   
Sbjct: 333 ALMLGQIVKGLVELHLGRRKPDDKDHVGNKRVRLVGDLMTQLFRTVLKQFLQELKSQLEK 392

Query: 388 TSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM-- 445
             A  +   I    R   I   +   LATGN   GK    Q++  + ++     + R+  
Sbjct: 393 YYARGRIPHIQTIVRPDIITERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVS 452

Query: 446 ---RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
              R   HF A               R L    WG +C V TP+G   GL+ +L    +I
Sbjct: 453 SLSRTQPHFEA---------------RDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEI 497

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +  +      ++  +L ++G++P+    +     A  V L+GR++G  +      L   +
Sbjct: 498 TTGVDE---GEVEHMLYNMGVIPILKAREEGVSGA-EVYLNGRLIG--VHPNPEELAKTV 551

Query: 563 RMLKIVGEKIPKSLEIVYLKRP-----EKGMGLYPGLYLFTGPGRMLRPVM-NLAAGNIE 616
           R L+  G KI   + I  +        + G    P L +  G  ++ R ++  +  G++ 
Sbjct: 552 RGLRRQG-KISDEINIAVINGTVYVNCDGGRIRRPLLVVENGKLKLTREIVEKVKRGDLT 610

Query: 617 WIGTFEQVFMDICITMKEAYPGITT----------HRELSKTDFLSNLANLIPMPDCNQS 666
           W    +   ++     +E    I T          H E+  +  L  +A++IP  + NQS
Sbjct: 611 WDDLVKMGVVEYLDADEEENAHIATDPRGNLTNYTHVEIIPSSILGAIASIIPYIEHNQS 670

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRN Y+  M KQ++G P  N+ Y+   + + L  P  P       + +     P G NA+
Sbjct: 671 PRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQNAV 730

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM-YSGVDGSM 785
           VA+++YTGY++EDA+ILNK+S ERG     +F+S+F      Y  Y TE   Y G +   
Sbjct: 731 VALLTYTGYNIEDAVILNKASVERG-----MFRSVF------YRTYETEEQKYPGGEEDR 779

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK---LNER 842
           ++                + D    K Y G +  +   ED + P   VYV +    + + 
Sbjct: 780 IE----------------IPDS-SVKGYRGPEAYSHLDEDGIAPPE-VYVSSNEVLIGKT 821

Query: 843 DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIGYRIQR 897
            P   Y      R +  R     +  V V R   G  +   +T +        +  R  R
Sbjct: 822 SPPRFYTTLEAERILKER----RDASVAVRRGEKGIVDKVIITESPEGNKLVKVRLRELR 877

Query: 898 NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            P +GDKFASR GQKG+  +    ED+PFT+ G+VPDI+ NPH  PSRMT+  L
Sbjct: 878 VPELGDKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHALPSRMTVAQL 931



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY + G E MYSG+ G  + A IF G+V+YQ+L HMV+DK   +
Sbjct: 965  LKLGYKWDGKEVMYSGITGERLVADIFIGIVYYQKLHHMVADKIHAR 1011


>gi|432863563|ref|XP_004070128.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Oryzias latipes]
          Length = 1093

 Score =  252 bits (644), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 241/887 (27%), Positives = 379/887 (42%), Gaps = 148/887 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TP +  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++  D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGQEKV------------ILIQEQLSKNRIIVDQDRKGTVGASVTSS 206

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRK-------SMCLLGM-MQSLHE--EGIHTQHDSK 296
             ++ +  N++  V  G  RF   H         ++   GM ++S  E  + I T+    
Sbjct: 207 THEKKSRTNII--VKQG--RFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIGTEEHVM 262

Query: 297 VFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGM 356
             F    +E  +  +    + ++ ++           ++  K + L+ M  ++  + QG 
Sbjct: 263 ANFAPSLEECQKAQI--FTQTQVKEF-----------NFRAKCIYLAVMVRRVI-LAQGE 308

Query: 357 VQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES---------DIYAAFRA 403
            ++D  D    + +   G L    +  L KK  S    +  +          D+    R 
Sbjct: 309 NKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQ 368

Query: 404 SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQE 462
             I + M N ++TGN S  +      M   G   + + ++R+ Y+S    + R  S F++
Sbjct: 369 DQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMTRISSQFEK 421

Query: 463 MRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQIP 515
            R  S PR L+   WG +CP  TP+G  CGL      + H+TT+ +    I   +   + 
Sbjct: 422 TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLALNLGVE 481

Query: 516 SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG---EKI 572
            V +  G     P +        +V L+G I+G I +     LV   R+++  G   E +
Sbjct: 482 DVNLLCGEELSYPSV-------FLVFLNGNILGVIRNH--HKLVSTFRLMRRAGFINEFV 532

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN------------------ 614
             S  +               +Y+ +  GR+ RP + +  G                   
Sbjct: 533 SISTNLTDR-----------CVYISSDGGRLCRPYIIVKKGQPMVKSKHIEDLSQGYRNF 581

Query: 615 --------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
                   +E++   E+    I +  +      TTH E+     L   A LIP P  NQS
Sbjct: 582 EDFLHEGLVEYLDVNEENDCQIAL-YEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQS 640

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRN YQC MGKQ MGT   N R +    +Y L  P  P  +    + +D +  P G NA 
Sbjct: 641 PRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNAT 700

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L      Y  +T +  V G M+
Sbjct: 701 VAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRR----YTNQT-FDKVMGPML 755

Query: 787 QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY 846
            A            RH + D        G     + +E+K     LV        + P+ 
Sbjct: 756 DA-----ATRKPLWRHNILDA------DGICCPGEKVENK---QILVNKSMPTVTQTPLE 801

Query: 847 SYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
              +  + +Y  V   Y G  +  +E V +SS   +   +      I  R  R P +GDK
Sbjct: 802 GSAQPGQPQYKEVPISYKGSTDSYIEKVMISSNAEDAFLIK-----ILLRQTRRPEIGDK 856

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHG+PSRMT+G L
Sbjct: 857 FSSRHGQKGVCGLIVPQEDMPFCDSGVCPDIIMNPHGYPSRMTVGKL 903



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 940  GYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 999

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1000 SRDGGLRLGEM--ERDCLIGY 1018


>gi|126460694|ref|YP_001056972.1| DNA-directed RNA polymerase subunit B [Pyrobaculum calidifontis JCM
           11548]
 gi|126250415|gb|ABO09506.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
           polymerase, subunit B' [Pyrobaculum calidifontis JCM
           11548]
          Length = 1127

 Score =  252 bits (643), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 252/957 (26%), Positives = 409/957 (42%), Gaps = 143/957 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
            I SF+  LD+ L   VE+   +E EI G  LKL + K  +  P++            YP
Sbjct: 41  QIKSFNDFLDKRLPRIVEEFKVVETEIKG--LKLVLEKIEVGWPRIKESDGSESL--IYP 96

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR   + Y+ P  +T     D +   T T  +G +PIM+KSKRC+L  L P++  ++ 
Sbjct: 97  MEARLRNATYAAPLYLTATLYVDDEPYVTETFYIGELPIMVKSKRCNLTRLKPSEYAKKF 156

Query: 192 EHPDEWGGYFIVGGHEKLV---RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
           E P ++GGYFI+ G E+++     L+ +R  + +  K +       + + +G   RS   
Sbjct: 157 EDPQDFGGYFIINGSERVIISQEDLVTDRPIYDVGDKPSVKFLAKTISTGIGY--RSTLT 214

Query: 249 DESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQ 308
            E   + V+ +VT  +          M  LG+     E+ +    D      ++    + 
Sbjct: 215 VELNKDGVI-YVTLSAMPVKIPFPIYMKALGL--ETDEDVVKAVSDDPDIQKELLPSLIA 271

Query: 309 YDLRHLNEVEICDY--------------------MLTNCILPHL-----DDYWDKFLCLS 343
            +   +   +  DY                    +L    LPHL     D+   + + L 
Sbjct: 272 ANQVAITREDALDYIGGKVAVGQPRPVRIERALQLLDRYFLPHLGTTTPDEKKQQEIRLK 331

Query: 344 HMTCKLFHVVQGMVQL-------DSEDSIMLQEIMTGGSL-----------YLQLLKKEK 385
                L  +V+G+V+L       D +D +  + +   G L           +LQ L+ + 
Sbjct: 332 K-ALMLGQIVKGLVELQLGRRKPDDKDHVGNKRVRLVGDLMTQLFRTVFKQFLQELRSQL 390

Query: 386 SGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
               A  +   I    R   I   +   LATGN   GK    Q++  + ++     + R+
Sbjct: 391 EKYYARGRIPHIQTIVRPDIITERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRV 450

Query: 446 -----RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
                R   HF A               R L    WG +C V TP+G   GL+ +L    
Sbjct: 451 VSSLSRTQPHFEA---------------RDLHPTQWGRLCAVETPEGQNVGLVKNLALLA 495

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
           +I+  +  + + Q+   L +LG +P+    +     A  V L+GR++G  +   A  LV 
Sbjct: 496 EITTGVDEREVEQL---LYNLGTVPVLKAREDGIRGA-EVYLNGRLIG--IHPNAEELVA 549

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRP-----EKGMGLYPGLYLFTGPGRMLRPVMN------ 609
            +R L+  G KI   + I ++        + G    P L +  G  ++ + ++       
Sbjct: 550 TVRSLRRQG-KISDEINIAHINGSVLVNCDGGRIRRPLLVVENGRLKLTKDIVERVRKGD 608

Query: 610 ------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
                 +  G +E++   E+    I +  +    G T H E+  +  L  +A++IP  + 
Sbjct: 609 LTWDDLVKMGVVEYLDADEEENAHIAVDPRGDLSGYT-HVEIIPSAILGAIASIIPYLEH 667

Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
           NQSPRN Y+  M KQ++G P  N+ Y+   + + L  P  P       + +     P G 
Sbjct: 668 NQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELVGYSKRPAGQ 727

Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM-YSGVD 782
           NA+VA+++YTGY++EDA+ILNK+S ERG     +F+S+F      Y  Y TE   Y G +
Sbjct: 728 NAVVALLTYTGYNIEDAVILNKASVERG-----MFRSVF------YRTYETEEQKYPGGE 776

Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK---L 839
              ++                V D    K Y G +  +   ED + P   VYV +    +
Sbjct: 777 EDRIE----------------VPDS-SVKGYRGPEAYSHLDEDGIAPPE-VYVSSNEVLI 818

Query: 840 NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIGYR 894
            +  P   Y      R +  R     +  V V R   G  +   +T +        +  R
Sbjct: 819 GKTSPPRFYTTLETERILKER----RDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLR 874

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             R P +GDKFASR GQKG+  +    ED+PFT+ G+VPDI+ NPH  PSRMT+G L
Sbjct: 875 ELRIPELGDKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHALPSRMTVGQL 931



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ G+ + G E MYSG+ G  + A IF G+V+YQ+L HMV+DK   +
Sbjct: 965  LKLGFRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHAR 1011


>gi|171186405|ref|YP_001795324.1| DNA-directed RNA polymerase subunit B [Pyrobaculum neutrophilum
           V24Sta]
 gi|170935617|gb|ACB40878.1| RNA polymerase Rpb2 domain 6 [Pyrobaculum neutrophilum V24Sta]
          Length = 1127

 Score =  252 bits (643), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 258/994 (25%), Positives = 414/994 (41%), Gaps = 163/994 (16%)

Query: 49  LTDKNFGKPPDKQNEFLLT--------LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG 100
           +  +  GK P + + ++L         L    I SF+  LD+ L   VED   +E EI G
Sbjct: 10  IVSQQDGKFPTRDDRWVLVERFIKDKGLANHQIKSFNDFLDKKLPKIVEDFKVVETEIKG 69

Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
             L L  ++    + K   G   I     YP EAR   + YS P  +T     D +   T
Sbjct: 70  LKLVLERIEVGWPKIKESDGSESI----IYPMEARLRNATYSAPLYLTATLYVDDEPYVT 125

Query: 161 FTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH 220
            T  +G +PIM+KSKRC+L  L P + I++ E P ++GGYFI+ G E+++    +   + 
Sbjct: 126 ETFYIGELPIMVKSKRCNLTRLRPGEYIKKFEDPQDFGGYFIINGSERVIISQEDLVADR 185

Query: 221 PIAIKRNAWKNRGLLFS-DLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG 279
           PI  + +    + +  +   G+  RS    E   + V+ +VT  +          M  LG
Sbjct: 186 PIYDRGDKPSVKYIAKTISTGIGYRSTLTVELNRDGVI-YVTLSAMPVKIPFPIYMKALG 244

Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY----------------- 322
           +     E+ +    D      ++    +  +   +   +  D+                 
Sbjct: 245 L--ETDEDVVKAVSDDPEIQKELLPSLIAANQIAITREDALDFIGGKVAVGQPKPIRVEK 302

Query: 323 ---MLTNCILPHL-----DDYWDKFLCLSHMTCKLFHVVQGMVQL-------DSEDSIML 367
              +L    LPHL     D+   + + L      L  +V+G+V+L       D +D +  
Sbjct: 303 AYQLLDKYFLPHLGTTTPDEKRQQEIRLKK-ALMLGQIVKGLVELQLGRRKPDDKDHVAN 361

Query: 368 QEIMTGGSL-----------YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLAT 416
           + +   G L           +LQ LK +     A  +   I    R   I   +   LAT
Sbjct: 362 KRVRLVGDLMTQLFRTVLKQFLQELKSQLEKYYARGRIPHIQTIVRPDIITERVRQALAT 421

Query: 417 GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
           GN   GK    Q++         +  N M  +S+ R V   S  +     E R L    W
Sbjct: 422 GNWVGGKTGVSQIL---------DRTNYMSTLSYLRRVV-SSLSRTQPHFEARDLHPTQW 471

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ 536
           G +C V TP+G   GL+ +L    +I+  +      ++  +L +LG++PL    +     
Sbjct: 472 GRLCAVETPEGQNVGLVKNLALLAEITTGVDE---GEVEQLLYNLGVVPLLKAREEGIRG 528

Query: 537 ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYL 596
           A  V ++GR++G  +      L   +R ++  G KI   + I YL            +Y+
Sbjct: 529 A-EVYINGRLIG--VHPNPEELAKTVRGMRRQG-KISDEINIAYLD---------GSVYV 575

Query: 597 FTGPGRMLRPVMNLAAGN--------------------------IEWIGTFEQVFMDICI 630
               GR+ RP++ +  G                           IE++   E+    I +
Sbjct: 576 NCDGGRIRRPLLVVEGGRLKLTKEIVEKVRRGDLTWDDLVKMGVIEYLDADEEENAHIAV 635

Query: 631 TMKEAYPGIT----THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
                 P +     TH E+  +  L  + ++IP  + NQSPRN Y+  M KQ++G P  N
Sbjct: 636 D-----PDVDLSNYTHVEIVPSSILGAVGSIIPYLEHNQSPRNQYEAAMAKQSLGLPQSN 690

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
           + Y+   + + L  P  P       + +     P G NA+VA+++YTGY++EDA+ILNK+
Sbjct: 691 FLYKLDSRGHMLYYPERPIVTTRGLELVGYSRRPAGQNAVVALLTYTGYNIEDAVILNKA 750

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETM-YSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S ERG     +F+S+F      Y  Y TE   Y G +   ++                + 
Sbjct: 751 SVERG-----MFRSVF------YRTYETEEQKYPGGEEDKIE----------------IP 783

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK---LNERDPMYSYWKESENRYVTCRYS 862
           D    K Y G +  +   ED + P   VYV +    + +  P   Y      R +  R  
Sbjct: 784 DS-SVKGYRGPEAYSHLDEDGIAPPE-VYVSSNEVLVGKTSPPRFYTTLEAERILKER-- 839

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSV 917
              +  V V R   G  +   +T +        +  R  R P +GDKFASR GQKG+  +
Sbjct: 840 --RDASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVVGM 897

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
               ED+PFT+ G+VPDI+ NPH  PSRMT+  L
Sbjct: 898 LLRHEDMPFTEDGIVPDIIVNPHALPSRMTVAQL 931



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY + G E MYSG+ G  + A IF GVV+YQ+L HMV+DK   +
Sbjct: 965  LKLGYKWDGKEVMYSGITGERLVADIFIGVVYYQKLHHMVADKIHAR 1011


>gi|327311708|ref|YP_004338605.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
           768-20]
 gi|326948187|gb|AEA13293.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
           768-20]
          Length = 1127

 Score =  252 bits (643), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 256/965 (26%), Positives = 409/965 (42%), Gaps = 159/965 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKV--PAGPVGIHFNKY 129
            I +F+  +D  L   +E++  +E EI G  LK+ I +  I  P++  P G   +     
Sbjct: 41  QIRAFNDFIDRKLPKIIEEMGVVETEIKG--LKVAIERVEIGWPRIKEPDGSETV----I 94

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
           YP EAR   + YS P  +TV    D +   T T   G +PIM+KSK+C+L  L P +  +
Sbjct: 95  YPMEARLRNATYSAPMYLTVTLYVDDEPYATETIYAGELPIMVKSKKCNLTRLKPEEYPK 154

Query: 190 RGEHPDEWGGYFIVGGHEKLV---RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           R E P++ GGYFI+ G E++V     L+ +R  + +  K        ++ +  G   R+ 
Sbjct: 155 RFEDPEDPGGYFIINGSERVVISQEDLVTDRPIYDVGDKPTIRYLAKVISTGPGY--RAT 212

Query: 247 KRDESATNNVLHFVTNG-SARFMFS-HRKSMCLLG-----------------MMQSL--H 285
              E   + V++   +    R  F+ + ++M L                   ++ SL   
Sbjct: 213 MTVEYHKDGVIYVTLSAIPVRIPFTVYMRAMGLESDQDIVLAVSDDPDIQKELLPSLLAG 272

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICD-YMLTNCILPHLDDYW------DK 338
           +E   T+ D+  F G          +R    ++I D Y L N      D+         K
Sbjct: 273 QEIAATRDDALDFVGGKIAVGQPRPIRIERALQILDKYFLPNLNPQKPDEKAMEEARIKK 332

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-----------YLQLLKKEKSG 387
            L L  +   L  +  G  + D +D +  + +     L           +LQ LK +   
Sbjct: 333 ALLLGQVVKGLIEMQLGRRKPDDKDHVANKRVRLVNDLLAQLFRTVMKQFLQELKNQLEK 392

Query: 388 TSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM-- 445
             A  K   +    R   I   +   LATGN   GK    Q++  + ++     + R+  
Sbjct: 393 YYARGKIPHLQTIVRPDIITERVKQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVS 452

Query: 446 ---RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
              R   HF A               R L    WG +C V TP+G   GL+ +L    +I
Sbjct: 453 SLSRTQPHFEA---------------RDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEI 497

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +  +   V+ +    L  LG++P+    +   E A  V L+GR++G  + Q    LV  L
Sbjct: 498 TIGVDEAVVEK---TLNELGVVPVLEARRGGLEGA-EVYLNGRLIG--IHQNPEELVKTL 551

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------V 607
           R ++  G KI   + + +L            +Y+    GR+ RP               V
Sbjct: 552 RKMRRQG-KISDEVNVAHLGD---------AVYVNCDGGRIRRPLLVIEDGKLKLTKEHV 601

Query: 608 MNLAAGNIEW-----IGTFEQVFMDICITMKEAYPGIT--------THRELSKTDFLSNL 654
             LA+G + W     +G  E +  D     + AY  +         TH E+  +  L  +
Sbjct: 602 QKLASGELTWNDLVKMGVVEYLDAD---EEENAYIAVGPEPDMSKYTHMEIVPSSILGAI 658

Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
           A++IP  + NQSPRN Y+  M KQ++G P  N+ Y+   + + L  P  P       + +
Sbjct: 659 ASIIPYLEHNQSPRNQYEAAMAKQSLGLPQANFMYKLDSRGHMLYYPERPIVTTRGLELI 718

Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
                P G NA+VA+++YTGY++EDA+I+NKSS +RG     +F+S F      Y  Y T
Sbjct: 719 GYSRKPAGQNAVVALLTYTGYNIEDAVIMNKSSVDRG-----LFRSNF------YRTYET 767

Query: 775 ETM-YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLV 833
           E   Y G +   ++                V D    + Y G +  +   ED + P  + 
Sbjct: 768 EEQKYPGGEEDRIE----------------VPDS-SARGYRGPEAYSHLDEDGIAPPEVY 810

Query: 834 YVGAK--LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN---- 887
             G +  + +  P   Y      + +  R     +  + V R   G  +   +T +    
Sbjct: 811 VTGGEVIIGKTAPPRFYMTLETEKILKER----RDASIPVRRGERGIVDRVVITESPEGN 866

Query: 888 -CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               +  R  R P +GDKFASR GQKG+  +    ED+PFT+ G+VPDI+ NPH  PSRM
Sbjct: 867 KLVKVRLRELRVPELGDKFASRHGQKGVIGMLLRQEDMPFTEDGIVPDIIVNPHAMPSRM 926

Query: 947 TIGFL 951
           T+G L
Sbjct: 927 TVGQL 931



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MYSG+ G  + A IF G+V+YQ+L HMV+DK   +
Sbjct: 968  GFRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHAR 1011


>gi|452820803|gb|EME27841.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1158

 Score =  252 bits (643), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 248/990 (25%), Positives = 405/990 (40%), Gaps = 194/990 (19%)

Query: 72  HIASFDFMLDEGLD--LAVEDIAPIEFE--IYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           HI SF+F++++ L   +A  D    + +   Y + L + +   +I E  V         +
Sbjct: 62  HIESFNFLIEKELSKIVAANDKVTCDADQSFYLRYLGIRVGTPSIEEDLV--------IS 113

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
           K  P E R     Y+ P  V V ++   +        +GR+PIML+S  C L      QL
Sbjct: 114 KVTPQECRLRDLTYAAPIYVDVRYTRGKEVLIRKDVAIGRIPIMLRSSHCILTGKKDGQL 173

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRL---LINNR------------------------RNH 220
              GE P + GGYFI+ G E+++ +   L  NR                        R  
Sbjct: 174 ASLGECPLDPGGYFIIRGTERVILIQEQLSKNRIIIEEDKKGNYCATVTSSTHERKSRTS 233

Query: 221 PIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFV-----TNGSARFMFSHRKSM 275
            +    N +     L  D+ ++I     +  +   ++  +        S  F+ +H+K  
Sbjct: 234 LVYKSNNIYLRHNSLVDDIPIWIVFKALEVESDQEIVQLIGLIEEEYRSYYFLLNHKKE- 292

Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY 335
           C+   +Q+ +E   +     ++F       +  Y  R  + +E    +L   IL H+  Y
Sbjct: 293 CISRHVQNRNEALEYIGSRVRLF-------RKGYSFRR-STIEEAQEVLAGVILSHIPTY 344

Query: 336 WDKF----LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAV 391
              F    + L+ M  +L  V + +  +D +D    + +   G L   L +      +A 
Sbjct: 345 QHNFRNKSIYLAFMVRRLLTVAENLTTVDDKDYYGNKRLELAGQLLSLLFEDLFKKFNAD 404

Query: 392 LK--------------ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
           LK              + DI    R  +I   + N + TGN +  +      M  +G   
Sbjct: 405 LKRHADMVLSKPNRAAQFDIVKCMRPDTISVGLENAIGTGNWTVKRFR----MHRAG--- 457

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ Y++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 458 ITQVLSRLSYIAALGMMTRITSQFEKTRKISGPRSLQGSQWGLLCPSDTPEGESCGLVKN 517

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
           L     I+     + L ++  +L        +    + P     + L+G+ +G  + + A
Sbjct: 518 LALTAHITTDAEEEPLIRLCYILGVEDATLFSGDELNNPSH-FRIFLNGKFLG--IHRNA 574

Query: 556 TSLVPKLRMLK---IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
           +      R L+    +GE +      +++   E        +YL    GR+ RP++ +  
Sbjct: 575 SYFANIFRFLRRKGAIGEFVS-----IFVNEAENV------VYLSCDSGRICRPLIIVEN 623

Query: 613 GN--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
           G                           +E++   E+    I ++ +   P  TTH E+S
Sbjct: 624 GKPKVTQQYIEQLERNQLEFTDLVQQGLVEYLDVNEENNALIALSEENIEPCSTTHLEIS 683

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L   A +IP P  NQSPRN YQC MGKQ +G    N   +    LY L     P  
Sbjct: 684 PLAILGVCAGVIPYPHHNQSPRNTYQCAMGKQAIGFIGYNQHLRTDTLLYLLTYAQKPLV 743

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
                  +  D  P G NAIVAV+SY+GYD+EDA+ILN+SS +RG+   C+ +       
Sbjct: 744 NTKTISFIKYDELPGGQNAIVAVMSYSGYDIEDALILNRSSLDRGYGRCCVVRKH----- 798

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
                                    FG+  Y            T D   R P+     ++
Sbjct: 799 ------------------------AFGLRRYPN---------GTCDRVCRPPSFSESSER 825

Query: 827 -------LGPDGLVYVGAKLNERDPMYSY-WKESEN------------RYVTCR-----Y 861
                  L  DGL  VG +L+   P  +Y +KE+              + V  R     Y
Sbjct: 826 THMKFACLEEDGLPKVGGRLS---PGQAYVYKETPMDTMTTMTSQQSIQQVGYRPQPFFY 882

Query: 862 SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
            G ++  ++ V ++S  +    +      +  R  R P VGDKF+SR GQKG+C +  P 
Sbjct: 883 KGPDDAVIDRVVVTSNASTHALIK-----VMIRETRTPEVGDKFSSRHGQKGVCGLIVPQ 937

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ED+PF + G+ PDI+ NPHGFPSRMT+G L
Sbjct: 938 EDMPFNEQGICPDIIMNPHGFPSRMTVGKL 967



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G  +QA +F G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1001 VQHGFSYTGKDFLYSGMTGEPLQAYVFMGPIYYQKLKHMVKDKMHARARGPRAVLTRQPT 1060

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1061 EGRSRDGGLRLGEM--ERDCLIGY 1082


>gi|379005506|ref|YP_005261178.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
 gi|375160959|gb|AFA40571.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
          Length = 1127

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 254/959 (26%), Positives = 405/959 (42%), Gaps = 139/959 (14%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           L +  I SF+  LD+ L   VED   ++ EI G  LKL + K  +  P++          
Sbjct: 37  LASHQIKSFNDFLDKRLPRIVEDFKVVDTEIKG--LKLVLEKIEVGWPRIKESDGSESL- 93

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
             YP EAR   + YS P  +T     D +   T T  +G +PIM+KSKRC+L  L P++ 
Sbjct: 94  -IYPMEARLRNATYSAPLYLTAVLYVDDEPYATETFYIGELPIMVKSKRCNLSRLRPSEY 152

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS-DLGVYIRSV 246
            +R E P ++GGYFI+ G E+++    +   + PI  K +    + L  +   G+  RS 
Sbjct: 153 PKRFEDPQDFGGYFIINGSERVIISQEDLVADRPIYDKGDKPSVKFLAKTISTGIGYRST 212

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
              E   + V+ + T  +          M  LG+     E+ +    D      ++    
Sbjct: 213 LTVELNKDGVI-YATLSAIPVKIPFPIYMKALGL--ETDEDVVKAVSDDPDIQKELLPSL 269

Query: 307 LQYDLRHLNEVEICDY--------------------MLTNCILPHL-----DDYWDKFLC 341
           +  +   +   +  DY                    +L    LPHL     D+   + + 
Sbjct: 270 VVANQIAITREDALDYIGGKVAVGQPRPVRVERALQLLDRYFLPHLGTTVQDEKKQQEIR 329

Query: 342 LSHMTCKLFHVVQGMVQL-------DSEDSIMLQEIMTGGSL--------YLQLLKKEKS 386
           L      L  +V+G+V+L       D +D +  + +   G L        + QLL++ +S
Sbjct: 330 LKK-ALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQLLQELRS 388

Query: 387 GTSAVLKESDI---YAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
                     I       R   I   +   LATGN   GK    Q++  + ++     + 
Sbjct: 389 QLEKYYARGRIPHLQTIVRPDIITERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLR 448

Query: 444 RM-----RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
           R+     R   HF A               R L    WG +C V TP+G   GL+ +L  
Sbjct: 449 RVVSSLSRTQPHFEA---------------RDLHPTQWGRLCAVETPEGQNVGLVKNLAL 493

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
             +I+  +    + Q+   L+  G++P+    +     A  V L+GR++G  +      L
Sbjct: 494 LAEITTGVDENEVEQM---LLQQGVVPILKAREEGIRGA-EVYLNGRLIG--IHPEPEEL 547

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLK-----RPEKGMGLYPGLYLFTGPGRMLRPVMN---- 609
           V  +R L+  G KI   + I YL        + G    P L +  G  ++ + ++     
Sbjct: 548 VKTVRSLRRQG-KISDEINIAYLNGVVYVNSDGGRIRRPLLVVEDGKLKLTKDIVERVKR 606

Query: 610 --------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                   L  G +E++   E+    I +   E      TH E+  +  L  +A++IP  
Sbjct: 607 GELTWDDLLKMGVVEYLDADEEENAHIAVD-PEGDLSNYTHVEIIPSSILGAIASIIPYL 665

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           + NQSPRN Y+  M KQ++G P  N+ Y+   + + L  P  P       + +     P 
Sbjct: 666 EHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELVGYSKRPA 725

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM-YSG 780
           G NA+VA+++YTGY++EDA+ILNK+S ERG     +F+S+F      Y  Y TE   Y G
Sbjct: 726 GQNAVVALLTYTGYNIEDAVILNKASVERG-----MFRSVF------YRTYETEEQRYPG 774

Query: 781 VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK-- 838
            +   ++                + D    K Y G +  +   ED + P   VYV +   
Sbjct: 775 GEEDKIE----------------IPDS-SVKGYRGPEAYSHLDEDGIAPPE-VYVSSSEV 816

Query: 839 -LNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIG 892
            + +  P   Y      R +  R     +  V V R   G  +   +T +        + 
Sbjct: 817 LIGKTSPPRFYTTLETERILKER----RDASVAVRRGEKGIVDRVIITESPEGNKLVKVR 872

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKFASR GQKG+  +    ED+PFT+ G+VPDI+ NPH  PSRMT+  L
Sbjct: 873 LRELRIPELGDKFASRHGQKGVVGMLLRQEDMPFTEEGIVPDIIVNPHALPSRMTVAQL 931



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY + G E MYSG+ G  + A IF G+V+YQ+L HMV+DK   +
Sbjct: 965  LKLGYKWDGKEVMYSGITGERLVADIFIGIVYYQKLHHMVADKIHAR 1011


>gi|241958746|ref|XP_002422092.1| DNA-directed RNA polymerase III subunit, putative [Candida
           dubliniensis CD36]
 gi|223645437|emb|CAX40093.1| DNA-directed RNA polymerase III subunit, putative [Candida
           dubliniensis CD36]
          Length = 1157

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 260/1004 (25%), Positives = 429/1004 (42%), Gaps = 167/1004 (16%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ S+++ +D  L       +L + D+ P 
Sbjct: 29  KKLTDE-INTAKDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDP- 86

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K L + +   + S+P       G+      P E R     YS P  V V ++  
Sbjct: 87  --EFYVKYLDIRVGHKSTSKP-------GVKEVILPPHECRLRDLTYSAPIYVDVEYTRG 137

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
            K       E+GR+P+ML+S +C L  ++ A + +  E P + GGYF+V G EK+     
Sbjct: 138 RKIIRHNDLEIGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKV----- 192

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSD--LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
                  I ++    KNR ++ +D   G+   SV        +  + +T     ++  + 
Sbjct: 193 -------ILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNS 245

Query: 273 KS--------MCLLGMMQSLH--------------------EEG----IHTQHDSKVFFG 300
            S        +   G++  L                     EE     + TQ  +  + G
Sbjct: 246 ISEDIPIVIILKAAGIVSDLEILQLVCGSDPNYQDLFVVNFEEAARLEVFTQQQALYYVG 305

Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGM 356
           +  K   +     L++++     +   I+ HL      + +K L ++ M  ++   +   
Sbjct: 306 KRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFKEKALYIATMARRVVMAMHNP 365

Query: 357 VQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTN 412
             +D  D +  + +   G L    +  L KK  S   A + +  +    R S  ++ ++ 
Sbjct: 366 KMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKV-LKKPSRTSEFDALLSI 424

Query: 413 FLATGNVSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQE 462
            + + N++ G N  +           M+ +G   +   ++R+ Y+S    + R  S F++
Sbjct: 425 NIHSNNITMGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEK 481

Query: 463 MRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVL 518
            R  S PR L+   +G +C   TP+G  CGL+ +L     I+   E  P K L       
Sbjct: 482 SRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLC------ 535

Query: 519 VSLGMLPLTPVIQSI--PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSL 576
           + LG  P+  +  +    E    V L+G ++G    +     V   R L+  G K+   +
Sbjct: 536 IVLGCEPIFALDSATLHVEGNFGVYLNGTLIGTT--RFPVKFVHDFRHLRRNG-KVSAFI 592

Query: 577 EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------------NIEWIGTFEQ 623
            I            +  +++ T  GR+ RP++ +  G             N EW  +F+ 
Sbjct: 593 SIYTNTH-------HQAVHIATDGGRICRPLIIVENGKSKVTAEHLAKLINQEW--SFDD 643

Query: 624 V-------FMDI------CITMKE----AYPG-ITTHRELSKTDFLSNLANLIPMPDCNQ 665
                   ++D+       I + E    A PG + TH E+     L  +A LIP P  NQ
Sbjct: 644 FLKHGLVEYLDVNEENDSLIALYEDDITANPGAVVTHLEIEPFTVLGAVAGLIPYPHHNQ 703

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRN YQC MGKQ +G    N   +    LY +  P  P  +    + ++ D  P G NA
Sbjct: 704 SPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIEYDKLPAGQNA 763

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
            VAV+SY+GYD+EDA++LNK+S +RGF    + +   ++L+   N+  T+ + +G+    
Sbjct: 764 TVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLKKYPNH--TQDILAGMRVDE 821

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM 845
               IF     +Q L      +  ++ + G+  ANK +    G   L   GA+  +R   
Sbjct: 822 NNKPIF----PHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTL---GAQQEQR--- 871

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
                   +R     Y G E   ++ V MS    +   +      +  R  R P +GDKF
Sbjct: 872 ----TAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIK-----VLLRQTRRPELGDKF 922

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +SR GQKG+C +    EDLPF DSG+ PDI+ NPHGFPSRMT+G
Sbjct: 923 SSRHGQKGVCGIIVQQEDLPFNDSGISPDIIMNPHGFPSRMTVG 966



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E G++Y G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1000 ILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1059

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1060 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1102

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1103 DVCNKCGLMGY 1113


>gi|307204008|gb|EFN82912.1| DNA-directed RNA polymerase III subunit RPC2 [Harpegnathos
           saltator]
          Length = 1081

 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 243/901 (26%), Positives = 370/901 (41%), Gaps = 135/901 (14%)

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
           K YP E R     Y+ P  V + +    +        +GR+PIML+S  C L  LT  +L
Sbjct: 37  KLYPHECRLRDLTYAAPIIVDIEYIRGNQPIIKNNIVIGRMPIMLRSANCRLTGLTAHEL 96

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
             + E P + GGYFI+ G EK+            I I+    +NR LL  D    I +  
Sbjct: 97  STKDECPHDPGGYFIIKGQEKV------------ILIQEQMVRNRILLEKDNKENIVAYC 144

Query: 248 RDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG--QIFKE 305
              +        +   S R+   H      + +       GIHT  +  +  G    F+ 
Sbjct: 145 NSSTHERKTKTSIIGKSGRYYMKHNIFQDDILVTIVFKAMGIHTDQNIVMLIGTEHEFQS 204

Query: 306 KLQYDLRH-------------------------LNEVEICDYMLTNCILPHLD----DYW 336
           KL++ LR                           N  E+ D + TN +L H+      + 
Sbjct: 205 KLEWSLRECHDLNIFTQNQALMYLNSKRTQPRVFNANEMKDVLATN-VLSHVPVKNFSFK 263

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK--------- 383
            K + L+ M  K+         LD  D +  + +   GSL    +  L K+         
Sbjct: 264 LKGIHLAFMVRKVIMAQSNKKLLDDRDFVGNKRLEVAGSLLSLMFEDLFKRFNWELKQIA 323

Query: 384 EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           +K+       + DI    R   I + +   ++TGN    +      M+  G     + ++
Sbjct: 324 DKNIPKIKAAQFDIVKHMRQDQITNGLLFAISTGNWKIKRFK----MERQG---ATQVLS 376

Query: 444 RMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ 501
           R+ Y+S    + R  S F++ R  S PR L    WG +CP  TP+G  CGL+ +L     
Sbjct: 377 RLSYISALGMMTRVHSQFEKTRQVSGPRSLHLSQWGMLCPCDTPEGESCGLVKNLALMAH 436

Query: 502 ISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL------MVMLDGRIVGYILDQIA 555
           I+   P   +A +   L +L M      IQS+  Q +      +V+L+G I G  +    
Sbjct: 437 ITTDEPEDHIAWL---LSTLDMQE----IQSLGSQEINHKDEWLVLLNGVIQG--VTSHY 487

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNI 615
             LV  L+ L+  G     S   +Y++   +       +++ T  GR+ RP   +  G +
Sbjct: 488 KKLVHTLKTLRRRG--YISSFVSIYMQDNHRC------VHISTDGGRLCRPYFIVENGRL 539

Query: 616 ----EWIGTFEQVFM--------------------DICITMKE-AYPGITTHRELSKTDF 650
               E +  F+Q  +                    D+ I + E      TTH E+     
Sbjct: 540 VVTAEHMKLFQQKILKFEDFLQTGMIEYLDVNEENDVLIALDENEIQAETTHMEIETFTI 599

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MG+Q  GT   N R +    +Y L  P +P  R   
Sbjct: 600 LGVCAGLIPYPHHNQSPRNTYQCAMGRQAAGTIGYNQRKRMDTVMYNLVYPQAPIVRTKT 659

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + +  +  P G NAIVA++SY GYD+EDA+++N++S +RG+    I++S    L+   N
Sbjct: 660 SEMIKYNELPAGENAIVAIMSYGGYDIEDALVVNRASLDRGYGRCLIYRSTKAVLKRYPN 719

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                 M   +D +  +             +H + D         R    K L +K  P 
Sbjct: 720 QTYDRIMGPSLDSNTNKVA----------WKHDILDADGIAMPGERVEDKKVLVNKSVPS 769

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
             +      ++  P   Y      R     Y G E   VE   ++S   +   +      
Sbjct: 770 QSIDRVNTGSDASPKTQY------RDAEIYYKGLEPAYVEQSLLTSNADDSFLIK----- 818

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
           +  R  R P +GDK +SR GQKG+       EDLPF D G+VPDI+ NPHGFPSRMT+G 
Sbjct: 819 LLLRQTRRPEIGDKLSSRHGQKGVIGSIVNPEDLPFNDQGIVPDIIMNPHGFPSRMTVGK 878

Query: 951 L 951
           L
Sbjct: 879 L 879



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G +  YSG+ G  M+A I+ G V+YQRL+HMV DK   +    R    +   +  
Sbjct: 916  GYNYLGKDCFYSGITGEPMEAYIYTGTVYYQRLKHMVQDKIHARAKGPRVVMTRQPTEGR 975

Query: 828  GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
              DG +  G    ERD + +Y              G   M +E + +SS   +   V  +
Sbjct: 976  SKDGGLRFGEM--ERDCLVAY--------------GASMMLIERLMLSSDGVK-VDVCNS 1018

Query: 888  CAYIGY 893
            C  +GY
Sbjct: 1019 CGLMGY 1024


>gi|260807868|ref|XP_002598730.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
 gi|229284004|gb|EEN54742.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
          Length = 1137

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 248/916 (27%), Positives = 381/916 (41%), Gaps = 154/916 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   +P++L + 
Sbjct: 91  PHECRLRDMTYSAPITVDIEYTRGNQRVVRNNLPIGRMPIMLRSSNCVLTGKSPSELAKL 150

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E P + GGYF+V G EK+            I I+    KNR ++ +D    I       
Sbjct: 151 KECPLDPGGYFLVKGVEKV------------ILIQEQLSKNRMIVETDRKGLISCSVTSS 198

Query: 251 SATNNVLHFVTNGSARFMFSH--------------------------------RKSMCLL 278
           +       +V   +A++   H                                R    + 
Sbjct: 199 THERKTKTYVVQKNAKYFLKHNTFTEDIPIAIAFKAMGVESDQEIVQLIGTDARTMAAVA 258

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDK 338
             ++  H+  + TQ  +  F G +   + ++       VE    +L + IL H+      
Sbjct: 259 PSLEECHKAQVFTQKQALRFIG-VKVRRSRWGGPKRTRVEEAREVLHSTILAHVPVVKFN 317

Query: 339 F-LCLSHMTCKLFHVVQGMVQ--LDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAV 391
           F L   ++   +  VVQ   Q  +D  D    + +   G L    +  L KK  +    +
Sbjct: 318 FRLKCVYLALMVRRVVQAQAQDRVDDRDYYGNKRLELAGQLLALLFEDLFKKFNAELKKI 377

Query: 392 LKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
             ++         DI    R   I + + N ++TGN +  +      M  +G   + + +
Sbjct: 378 ADQTIPKPRAAQFDIVKHMRQDQITNGLVNAISTGNWTVKRFK----MDRAG---VTQVL 430

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LN 494
           +R+ ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL      + 
Sbjct: 431 SRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMT 490

Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVGYILD 552
           H+TT+   SE  P + LA       +LG+  + L    +   + + +VML+G I+G I D
Sbjct: 491 HITTD---SEEQPIQRLA------FNLGVEDVHLLSGEELNSQDSYLVMLNGNILGVICD 541

Query: 553 QIATSLVPKLRMLKIVG------EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML-- 604
                L+   R ++  G         P           + G    P  Y+    GR +  
Sbjct: 542 H--QHLIRSFRKMRRAGYINEFVSICPNHEHRCVNIASDAGRVCRP--YIIVTNGRPMVT 597

Query: 605 -RPVMNLAAGN-----------IEWIGTFEQVFMDICITMKEA----------------- 635
            R +  L  G            +E++   E+   D  IT+ EA                 
Sbjct: 598 NRHIEELTKGYRAFEDFLREGLVEYLDVNEE--NDCNITLYEADITREDETTLEHLQCFV 655

Query: 636 YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
               TTH E+     L   A LIP P  NQSPRN YQC MGKQ MG    N   +    L
Sbjct: 656 SCRDTTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGAIGYNQHNRIDTLL 715

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           Y L  P  P  +    + +D +  P G NA VAV+SY+GYD+EDA+ILNKSS +RGF   
Sbjct: 716 YLLVFPQRPMVKTKTIELIDYEKLPAGQNATVAVMSYSGYDIEDALILNKSSVDRGFGRC 775

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
            +++     L+     Y  +T +  V G M+ A     +      RH + D         
Sbjct: 776 LVYRKQNCTLKR----YSNQT-FDRVMGPMVDAATRKPI-----WRHEILDVDGICAPGE 825

Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
           R    + L +K  P   +         +P+ +  ++ E + V   Y G  +  VE V +S
Sbjct: 826 RVQNKQVLVNKSMPKQTM---------NPVQTPGQQPEYQDVPITYKGPVDSYVETVLVS 876

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
           S   E   +      +  R  R P +GDKF+SR GQKG+C +    ED+PFTD G+ PDI
Sbjct: 877 SNQEEAFLIK-----MLLRQTRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFTDQGICPDI 931

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPHGFPSRMT+G L
Sbjct: 932 IMNPHGFPSRMTVGKL 947



 Score = 48.5 bits (114), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G+NY G + + SG+ G  + A I+ G V+YQ+L+HMV DK   +    R    +   
Sbjct: 981  VQHGFNYQGKDYLTSGITGEPLNAYIYTGPVYYQKLKHMVLDKIHARAKGPRAVLTRQPT 1040

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1041 EGRSRDGGLRLGEM--ERDCLIGY 1062


>gi|189230055|ref|NP_001121521.1| polymerase (RNA) III (DNA directed) polypeptide B [Xenopus
           (Silurana) tropicalis]
 gi|183986364|gb|AAI66377.1| LOC100158643 protein [Xenopus (Silurana) tropicalis]
          Length = 1134

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 240/924 (25%), Positives = 390/924 (42%), Gaps = 181/924 (19%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSS 206

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSM-----------------CL 277
             ++ +  N++  V  G  RF   H             K+M                  +
Sbjct: 207 THEKKSRTNLV--VKQG--RFYLKHNTLTEDIPIAIIFKAMGVESDQEIVQMIGTEEHVI 262

Query: 278 LGMMQSLHE---EGIHTQHDSKVFFGQIFKEKLQYDLR--HLNEVEICDYMLTNCILPHL 332
                SL E     I TQ  +  F G   + +  +       ++++    +L + IL H+
Sbjct: 263 AAFAPSLEECQKAQIFTQMQALKFIGNKVRRQRMWGSSGPKKSKIDEARELLASTILTHV 322

Query: 333 D----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE 384
                 +  K + ++ M  ++  + QG  ++D  D    + +   G L    +  L KK 
Sbjct: 323 PVKEFHFRTKCIYIAVMVRRVI-LAQGANKVDDRDYYGNKRLELAGQLLSLLFEDLFKKF 381

Query: 385 KSGTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGF 435
            S    +  +          D+    R   I + M N +++GN S  +      M   G 
Sbjct: 382 NSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISSGNWSLKRFK----MDRQG- 436

Query: 436 VIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLL 493
             + + ++R+ Y++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+
Sbjct: 437 --VTQVLSRLSYIAALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLV 494

Query: 494 NHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA--LMVMLDGRIVGYIL 551
            +L     I+  +    + ++ +   +LG+  +  +       A   +V L+G I+G I 
Sbjct: 495 KNLALMTHITTDMEDGPIIKLAA---NLGVEDVNLLCGEELSYANVFLVFLNGNILGVIR 551

Query: 552 DQIATSLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP-- 606
           D     LV   R+++  G   E +  S  I               +Y+ +  GR+ RP  
Sbjct: 552 DH--QKLVNTFRLMRRAGYINEFVSISTNISDR-----------CVYISSDGGRLCRPYI 598

Query: 607 -------------VMNLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTH 642
                        +  L+ G            +E++   E+   ++ +  +      TTH
Sbjct: 599 IVKNQRSAVTNKHIQELSQGYRSFEDFLHESLVEYLDVNEENDCNVAL-YEHTITKHTTH 657

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P 
Sbjct: 658 LEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQ 717

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P  +    + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+  
Sbjct: 718 RPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK 777

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
             L+     Y  +T +  V G M+ A         Q  RH + D                
Sbjct: 778 CTLKR----YSNQT-FDKVMGPMLDAN-----TRKQIWRHEILD---------------- 811

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYW---------------KESENRYVTCRYSGKEEM 867
                  DG+   G K+  +  + + +               ++ + + V   Y G  + 
Sbjct: 812 ------ADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVPITYKGPTDS 865

Query: 868 CVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
            +E V +SS   +   +      I  R  R P +GDKF+SR GQKG+C +  P ED+PF 
Sbjct: 866 YIEKVMISSNAEDAFLIK-----ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFC 920

Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
           ++G+ PDI+ NPHG+PSRMT+G L
Sbjct: 921 ETGICPDIIMNPHGYPSRMTVGKL 944



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 981  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1040

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1041 SRDGGLRLGEM--ERDCLIGY 1059


>gi|431905258|gb|ELK10303.1| DNA-directed RNA polymerase III subunit RPC2 [Pteropus alecto]
          Length = 1207

 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 239/894 (26%), Positives = 385/894 (43%), Gaps = 140/894 (15%)

Query: 140  VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
             YS P  V + ++   +        +GR+PIML+S  C L   TPA+  +  E P + GG
Sbjct: 182  TYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGG 241

Query: 200  YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSVKRDESATNN 255
            YFIV G EK+            I I+    KNR ++ +D    +G  + S   ++ +  N
Sbjct: 242  YFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSRTN 289

Query: 256  ---------------------VLHFVTNGS------ARFMFSHRKSMCLLG-MMQSLHEE 287
                                 V+ F   G        + + +    M   G  ++   + 
Sbjct: 290  MAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKA 349

Query: 288  GIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCL-S 343
             I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++  +  C+ +
Sbjct: 350  QIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYT 409

Query: 344  HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES---- 395
             +  +   + QG  ++D  D    + +   G L    +  L KK  S    +  +     
Sbjct: 410  AVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQ 469

Query: 396  -----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSH 450
                 D+    R   I + M N ++TGN S  +      M   G   + + ++R+ Y+S 
Sbjct: 470  RAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISA 522

Query: 451  FRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +  
Sbjct: 523  LGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMED 582

Query: 509  KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
              + ++ S L    +  L     S P    +V L+G I+G I D     LV   R+++  
Sbjct: 583  GPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLVNTFRLMRRA 639

Query: 569  G---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NL 610
            G   E +  S  +               +Y+ +  GR+ RP +                L
Sbjct: 640  GYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPAVTNKHMEEL 688

Query: 611  AAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIP 659
            A G            +E++   E+   +I +  +      TTH E+     L   A LIP
Sbjct: 689  AQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTLLGVCAGLIP 747

Query: 660  MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
             P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +    + ++ +  
Sbjct: 748  YPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKL 807

Query: 720  PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
            P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+     Y  +T + 
Sbjct: 808  PAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FD 862

Query: 780  GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
             V G M+ A     +  ++ L           D  G     + +E+K     LV      
Sbjct: 863  KVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---QVLVNKSMPT 908

Query: 840  NERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQR 897
              + P+       + +Y  V   Y G  +  +E V +SS   +   +      +  R  R
Sbjct: 909  VTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTR 963

Query: 898  NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 964  RPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 1017



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    + P      +  
Sbjct: 1054 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHGRRRRSKQPLFGQPTEGR 1113

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1114 SRDGGLRLGEM--ERDCLIGY 1132


>gi|374327622|ref|YP_005085822.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
 gi|356642891|gb|AET33570.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
          Length = 1127

 Score =  251 bits (640), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 258/994 (25%), Positives = 417/994 (41%), Gaps = 146/994 (14%)

Query: 39  NTLSAPSLKNLTDKNFGKPPDKQNEFLLT--------LGAPHIASFDFMLDEGLDLAVED 90
           + L  P + + +D  F   P + + ++L         L +  I SF+  LD+ L   VED
Sbjct: 3   DLLPLPVVTSPSDGGF---PTRDDRWVLVERFIKDKGLASHQIKSFNDFLDKKLPRIVED 59

Query: 91  IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVA 150
              +E EI G  LKL + +  +  P++            YP EAR   + YS P  +T  
Sbjct: 60  FKVVETEIKG--LKLVLERIEVGWPRIKESDGSESL--IYPMEARLRNATYSAPLYLTAT 115

Query: 151 WSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
              D +   T T  +G +PIM+KSKRC+L  L   +  +R E P ++GGYFI+ G E+++
Sbjct: 116 LYVDDEPYATETFYIGELPIMVKSKRCNLTRLRTGEYAKRFEDPQDFGGYFIINGSERVI 175

Query: 211 RLLINNRRNHPIAIKRNAWKNRGLLFS-DLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
               +   + PI  K +    R L  +   G+  RS    E + + V+ + T  +     
Sbjct: 176 ISQEDLVADRPIYDKGDKPSVRYLAKTISTGIGYRSTLTVEFSRDGVI-YATLSAMPVKI 234

Query: 270 SHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY------- 322
                M  LG+     EE +    D      ++    +  +   +   +  D+       
Sbjct: 235 PFPIYMKALGL--ETDEEVVKAVSDDPEIQKELLPSLIAANQIAITREDALDFIGGKVAV 292

Query: 323 -------------MLTNCILPHL-----DDYWDKFLCLSHMTCKLFHVVQGMVQL----- 359
                        +L    LPHL     D+   + + L      L  +V+G+V+L     
Sbjct: 293 GQPRPVRVERALQLLDRYFLPHLGTTVADEKRQQEIRLKK-ALMLGQIVKGLVELHLGRR 351

Query: 360 --DSEDSIMLQEIMTGGSL-----------YLQLLKKEKSGTSAVLKESDIYAAFRASSI 406
             D +D +  + +   G L           +LQ LK +     A  +   I    R   I
Sbjct: 352 KPDDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQLEKYYARGRIPHIQTVVRPDII 411

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM-----RYMSHFRAVHRGSYFQ 461
              +   LATGN   GK    Q++  + ++     + R+     R   HF A        
Sbjct: 412 TERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHFEA-------- 463

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
                  R L    WG +C V TP+G   GL+ +L    +I+  +      ++  +L  +
Sbjct: 464 -------RDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDE---GEVEQMLYGM 513

Query: 522 GMLPLTPVIQSIPE--QALMVMLDGRIVGY--ILDQIATSLVPKLRMLKIVGEKIPKSLE 577
           G++P   ++++  E      V L+GR++G     D++A ++    R  KI  E     L 
Sbjct: 514 GVVP---ILKARDEGVAGAEVYLNGRLIGVHPNPDELAAAVRGLRRQGKISDEINIAVLN 570

Query: 578 IVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN-LAAGNIEWIGTFEQVFMDICITMKEAY 636
            V     + G    P L +  G  ++ + V+  +  G++ W    +   ++     +E  
Sbjct: 571 GVVYVNSDGGRIRRPLLVVEDGKLKLTKEVVERVKRGDLTWDDLVKTGVVEYLDADEEEN 630

Query: 637 PGITT----------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
             I T          H E+  +  L  +A++IP  + NQSPRN Y+  M KQ++G P  N
Sbjct: 631 AHIATDPHVDLSNYTHVEIIPSSILGAVASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSN 690

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
             Y+   + + L  P  P       + +     P G NA+VA+++YTGY++EDA+ILNK+
Sbjct: 691 LLYKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQNAVVALLTYTGYNIEDAVILNKA 750

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETM-YSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S ERG     +F+S+F      Y  Y TE   Y G +   ++                + 
Sbjct: 751 SVERG-----MFRSVF------YRTYETEEQKYPGGEEDRIE----------------IP 783

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK---LNERDPMYSYWKESENRYVTCRYS 862
           D    K Y G +  +   ED + P   VYV +    + +  P   Y      R +  R  
Sbjct: 784 DS-SVKGYRGPEAYSHLDEDGIAPPE-VYVSSNEVLIGKTSPPRFYTTLEAERILKER-- 839

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSV 917
              +  V V R   G  +   VT +        +  R  R P +GDKFASR GQKG+  +
Sbjct: 840 --RDASVAVRRGERGIVDRVIVTESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVLGM 897

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
               ED+PFT+ G+VPDI+ NPH  PSRMT+  L
Sbjct: 898 LLRHEDMPFTEDGIVPDIIVNPHALPSRMTVAQL 931



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 32/47 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY + G E MYSG+ G  + A IF GVV+YQ+L HMV+DK   +
Sbjct: 965  LKLGYKWDGKEVMYSGITGERLVADIFIGVVYYQKLHHMVADKIHAR 1011


>gi|444316230|ref|XP_004178772.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
 gi|387511812|emb|CCH59253.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
          Length = 1148

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 267/1014 (26%), Positives = 419/1014 (41%), Gaps = 202/1014 (19%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLD-------LAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF+F +D  L        L + D+ P 
Sbjct: 33  KKLTDE-INTAEDKWNLLPAFLKVKGLVKQHLDSFNFFVDVDLKKIIKANRLILSDVDP- 90

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K + + I + + S  K    P         P E R     YS P  V + ++  
Sbjct: 91  --EFYLKFIDIRIGQRSNSSSKDILAP---------PHECRLRDMTYSAPIYVDIEYTRG 139

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                    E+G++PIML+S +C L       +    E P + GGYFIV G EK+     
Sbjct: 140 RNIVIHRDVEIGKMPIMLRSNKCILNGCDEQMMARLNECPLDPGGYFIVNGTEKV----- 194

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSD--LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
                  I ++    KNR ++ +D   GV   SV        +  + VT     ++  + 
Sbjct: 195 -------ILVQEQLSKNRIIVEADEKKGVVQASVTSSTHERKSKTYVVTKNDKIYLKHNS 247

Query: 273 KS--------MCLLGMMQSLH--------------------EEG----IHTQHDSKVFFG 300
            S        +   G++  L                     EE     I+TQ  +  + G
Sbjct: 248 ISEDVPIAIVLKAAGIVSDLEILQLVCGNDSSYQDIFAVNLEEAAKFKIYTQQQALEYIG 307

Query: 301 QIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQG 355
              K   +  L  L E +E     +   ++ HL     D+ +K L ++ MT ++   +  
Sbjct: 308 TKVKTIRKQKLTALQEGIE----AIATTVIAHLTVEELDFREKALYIAMMTRRVVMAIHN 363

Query: 356 MVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS----GTSAVLKESDIYAAFRA---- 403
              +D  D +  + +   G L    +  L KK  S        VLK+ +    + A    
Sbjct: 364 PKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFTSDFKMSIDKVLKKPNRAMEYDALLSI 423

Query: 404 ----SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GS 458
               ++I S +   ++TGN S  +      M+ +G   +   ++R+ Y+S    + R  S
Sbjct: 424 NVHCNNITSGLNRSISTGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISS 476

Query: 459 YFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQI 514
            F++ R  S PR L+   +G +C   TP+G  CGL+ +L     I+   E  P K L  +
Sbjct: 477 QFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEDPIKKLCYV 536

Query: 515 PSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPK 574
                 LG+  ++ +  +   ++  V L+G +VG    +     V + R L+  G K+  
Sbjct: 537 ------LGVEDISSLDSATIHESYGVHLNGTLVGTT--RFPNKFVTQFRDLRRAG-KVSA 587

Query: 575 SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------------------- 614
            + I Y    ++       +++ T  GR+ RP++ +  G                     
Sbjct: 588 FISI-YTNSHQQ------AVHIATDGGRICRPLIVIEKGKSLVKAEHLRDLLNGDLVFDD 640

Query: 615 ------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPR 668
                 +E++   E+    I +  K+  P + TH E+     L  +A LIP P  NQSPR
Sbjct: 641 FLKLGLVEYLDVNEENDSFIALYEKDITPAM-THLEIEPFTVLGAVAGLIPYPHHNQSPR 699

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           N YQC MGKQ +G    N   +    LY +  P  P  +    + ++ D  P G NA VA
Sbjct: 700 NTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELINYDKLPAGQNATVA 759

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           V+SY+GYD+EDA+ILNKSS +RGF      +     L+   N+  T+ +  G+       
Sbjct: 760 VMSYSGYDIEDALILNKSSIDRGFGRCETRRKTTTILKRYPNH--TQDIIGGM------- 810

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL--------- 839
                     R+       WQ               + LGPDGL  VG K+         
Sbjct: 811 ----------RVDENGKPIWQ--------------HEALGPDGLGEVGMKVSSGQIYINK 846

Query: 840 ----NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRI 895
               N  + + +   +S+ +     Y G E   V+ V MS    +   +      +  R 
Sbjct: 847 SIPTNTAEGLEAINTQSQYKETPVMYRGPEPSHVDQVMMSVSDNDQALIK-----VLLRQ 901

Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            R P +GDKF+SR GQKG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 902 NRRPELGDKFSSRHGQKGVCGLIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVG 955



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN S  Y   F    + +   I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ
Sbjct: 965  AGVLNGSLEYGTCFGGSKLEEMSKILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQ 1024

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
            +L+HMV DK   +    R    +   +    DG + +G    ERD + +Y          
Sbjct: 1025 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM--ERDCVIAY---------- 1072

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                G  ++ +E + +SS   E   V   C  +GY
Sbjct: 1073 ----GASQLLLERLMISSDAFE-VDVCDKCGLMGY 1102


>gi|254573076|ref|XP_002493647.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
           GS115]
 gi|238033446|emb|CAY71468.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
           GS115]
 gi|328354525|emb|CCA40922.1| DNA-directed RNA polymerase II subunit B [Komagataella pastoris CBS
           7435]
          Length = 1158

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 257/984 (26%), Positives = 415/984 (42%), Gaps = 183/984 (18%)

Query: 72  HIASFDFMLDEGLDLAVED----IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           H+ SF++ +D+ L   ++     ++ ++ E Y K L + +   +  + +       +  N
Sbjct: 61  HLDSFNYFVDKDLKKIIKANEKVLSDVDPEFYLKYLDIRVGYKSTEDLQ------KVKRN 114

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
              P + R + + YS P  V V ++   K       E+G++PIML+S +C L +   +Q+
Sbjct: 115 MIPPHQCRLSDTTYSAPIYVDVEYTRGRKIIMHRDLEIGKMPIMLRSNKCILESKDESQM 174

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
               E P + GGYFIV G EK++ L+      + I ++ +  K           + R  K
Sbjct: 175 ASLCECPLDPGGYFIVNGTEKVI-LVQEQLSKNRIIVEADDKKQIVQASVTSSTHERKSK 233

Query: 248 RDESATNNVLHFVTNG-----------SARFMFSHRKSMCLLGMMQSLHEE--------- 287
                 NN ++   N             A  + S  + M L+    S +++         
Sbjct: 234 TYVVTKNNKIYLKHNSISEEVPIVLVLKAAGIVSDLEIMQLVCGDDSTYQDLFTINFEEA 293

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYM-----LTNCILPHLD----DY 335
               IHTQ D+  + G+  K      +R L   ++  Y      + N I+ H+     ++
Sbjct: 294 AKLDIHTQRDALEYIGKRVKT-----MRRLGAPKLSIYQEGVEAIANTIVAHISVEDLNF 348

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA- 390
            +K + L+ MT ++   +     +D  D +  + +   G L    +  L KK  S   A 
Sbjct: 349 REKAIYLAIMTRRVVMAMHNPTMIDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKAN 408

Query: 391 ---VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIM 438
              +LK+ +     RAS  ++ ++  + + N++ G N  +           M+ +G   +
Sbjct: 409 IDKILKKPN-----RASEFDALLSINVHSNNITTGINRAISTGNWSLKRFKMERAG---V 460

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 461 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNL 520

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI--PEQALMVMLDGRIVGYILDQI 554
                I+     + + +I  +L   G   +  V  S+        V L+G ++G I  + 
Sbjct: 521 ALMTHITTDDEEEPVRKICYLL---GAEDIKIVDSSVISSRSNFGVYLNGTMIGVI--RY 575

Query: 555 ATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----- 609
            T  V K R L+  G K+   + I Y+    K       ++L    GR+ RP++      
Sbjct: 576 PTVFVTKFRKLRRSG-KVSAFISI-YINSHHKA------VHLAADGGRICRPLIIVENGV 627

Query: 610 ---------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKT 648
                                L  G +E++   E+    I +  K+     TTH E+   
Sbjct: 628 SKVEAHHLQKLKDGEWQFDSFLTNGLVEYLDVNEENDSLIALYEKDI-KNYTTHLEIEPF 686

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
             L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  + 
Sbjct: 687 TVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLMVYPQQPMVKT 746

Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
              + +  D  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    +F+     L+  
Sbjct: 747 KTIELIGYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKNTTLLKRY 806

Query: 769 YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE---- 824
            N+                                      TKD  G    N   E    
Sbjct: 807 PNH--------------------------------------TKDILGGMSVNDQGEPIFQ 828

Query: 825 -DKLGPDGLVYVGAKL-------NERDPMYS-----------YWKESENRYVTCRYSGKE 865
              LGPDGL  VG  L       N+  P+ S             ++ ++R     Y G E
Sbjct: 829 HRSLGPDGLGEVGLPLESGQVYVNKFVPINSEESIIGQTPDDSQRKEQHRETPMVYRGPE 888

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              ++ + MS G  E   V         R  R P +GDKF+SR GQKG+C +    EDLP
Sbjct: 889 PSYIDQMMMSLG--ENDQVLVKAL---LRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLP 943

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIG 949
           F D G+ PDI+ NPHGFPSRMT+G
Sbjct: 944 FNDDGISPDIIMNPHGFPSRMTVG 967



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1001 ILIDKGFSYSGKDQLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQ 1060

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1061 PTEGRSRDGGLRLGEM--ERDCVVAY--------------GASQLLLERLMISSDAFE-V 1103

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1104 DVCNTCGLMGY 1114


>gi|401018|sp|P31814.1|RPOB_THECE RecName: Full=DNA-directed RNA polymerase subunit B
 gi|48140|emb|CAA47722.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus celer]
          Length = 1122

 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 243/961 (25%), Positives = 408/961 (42%), Gaps = 147/961 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +D G+   +++   ++ +I    +K   V+    E +   G         YP
Sbjct: 33  HLDSYNAFIDHGMQEVIDEFGGVKPDIPDFEVKFGKVRLGEPEFQEAQG----QRKPLYP 88

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +    +G +       +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 89  MDARIRNLTYSAPIYLELIPVVNGVSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLG 148

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL--FSDLGVYIRSVKRD 249
           E P + GGYFIV G E+++ + I +   +   ++R+  +NR +   FS    Y R++   
Sbjct: 149 EDPKDPGGYFIVNGSERVI-VSIEDLAPNKTLVERDERQNRIIAKCFSYRHGY-RALITV 206

Query: 250 ESATNNVLH-----------FVTNGSARFMFSHRKSMCLLG--------MMQSLHEEG-I 289
           E   + +L+           FV    A  + S R+ +  +         +  +L +   +
Sbjct: 207 ERRKDGILYVKLPNVPRPVKFVYVMRALGLLSDREIVEAVSDDPRIQHVLFDNLEDASDV 266

Query: 290 HTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLS 343
            TQ ++  + G++    +  +Y LR    +      + N +LPH+     D   K   L 
Sbjct: 267 TTQEEALDYIGKLSLPGQPKEYRLRRAQNI------IDNNLLPHMGVEEKDRKAKAYYLG 320

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------KEKSGTSAVLKE 394
            M  ++  +  G+   D +D    + +   G L + L +          +   T    ++
Sbjct: 321 MMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRK 380

Query: 395 SDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            + Y           + R   +   + + LATG+   G+    QL+  + ++        
Sbjct: 381 GERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYI-------- 432

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+ 
Sbjct: 433 -STLSHLRRVT-SPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITT 490

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLR 563
            +P +   ++   L  LG++P+    +  P   L  + L+G +VG + D      V ++R
Sbjct: 491 GVPEE---EVREYLERLGVVPIE---ERRPNPDLWRLYLNGVLVGTVED--GEGFVNRIR 542

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VM 608
             +  G KI   + +   +  +        +Y+ +  GR+ RP               V 
Sbjct: 543 TDRRSG-KISDIINVALYQDED-----VKEIYVNSDDGRVRRPLIIVENGRPKLTREHVE 596

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT----------THRELSKTDFLSNLANLI 658
            +  G++ W    +   ++     +E    +           TH EL     L   A+L+
Sbjct: 597 AIKNGSLTWSDLVKMGVIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPASLV 656

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P P+ N  PRN Y   M KQ++G    N+R +   + + +  P  P         +  + 
Sbjct: 657 PYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEE 716

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
            P G N +VAV+SY GY+MEDA+I+NK+S ERG A    F++   E +    Y G +T  
Sbjct: 717 RPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEK---RYLGGQTDR 773

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSD-------KWQTKDYF-GRDPANKALEDKLGPD 830
             +    +Q   + G  +Y   RH+  D       K   KD   GR    + LE++ G  
Sbjct: 774 FEIPDPTIQG--YLGERYY---RHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLG 828

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
           G++                   E R  +      E   V+ V +    TE G  T     
Sbjct: 829 GIIL-----------------QERRETSLTVRPSETGVVDKVII----TETGDGT-KLVK 866

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
           +  R  R P  GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT+G 
Sbjct: 867 VTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 926

Query: 951 L 951
           L
Sbjct: 927 L 927



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A +F GV++YQRL HMV+DK   +
Sbjct: 964  GFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHAR 1007


>gi|440297940|gb|ELP90581.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
           invadens IP1]
          Length = 1140

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 249/965 (25%), Positives = 418/965 (43%), Gaps = 159/965 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPI----EFEIYGKTLKLNIVKAAISE--PKVPAGPVGIH 125
           HI SF++ +DE +   V     +    + + Y K L + + +  + E   K P  P+   
Sbjct: 58  HIDSFNYFIDEEIRQIVRANDKVTCDADSKFYLKYLDVWVHQPCVEENYKKEPITPM--- 114

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
                  E R     Y+ P   ++ ++ D K     T  +G +PIML+SK C L N T  
Sbjct: 115 -------ECRLRDLSYTAPIQASIEFTRDKKVYRK-TVTIGYMPIMLQSKHCVLYNNTFD 166

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRN-----------HPIAIK 225
           Q ++ GE P + GGYF+V G E+++         R+LI                H +  +
Sbjct: 167 QFMKHGECPMDPGGYFVVKGVERVILSQEQMSKNRILIETSSQGFLSASVTSATHEVKSR 226

Query: 226 RNAWKNRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFS---HRKSM 275
              +  RG L+        D+ V I        +    L FV N     M +     K+ 
Sbjct: 227 TVVYLKRGKLYLKHNSLTEDVPVMIIIKAMGMESDMEFLQFVGNSYTSKMINSIEECKTK 286

Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-- 333
            +L   ++L   G H     K++ GQ      +  +    +V+    +L N ILPH++  
Sbjct: 287 NVLNQREALRYVGNHL----KIYTGQ------KGYISKRPKVDEARDVLANLILPHIEVL 336

Query: 334 --DYWDKFLCLSHMTCKLFHVVQGMVQLDSED--------------SIMLQEIMTGGSLY 377
             ++  K + ++ M   +    +   +LD +D              S++ +++    +  
Sbjct: 337 RYNFKTKIIYIALMVSWILKADE-TGELDDKDYYGNKRMELAGQMMSLLFEDLFKQFNTE 395

Query: 378 LQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
           LQ +  ++       +  DI        I + + + L+TGN    + +    M  +G   
Sbjct: 396 LQTIATKELSKKTRSESFDILKHISPHRITTGLIHALSTGNWVLKRFN----MDRAG--- 448

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ Y+S    + R  S+F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 449 VTQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKN 508

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
            +    ++E         I ++L +LG+    L    +   E + +V L+G+++G  + Q
Sbjct: 509 FSL---LTEVTTDSDDQAIMTMLFNLGVEDANLISGDELNSENSYLVFLNGQLLG--IHQ 563

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
                + + R+L+  G ++ K + + +L   ++ + +       +  GR+ RP++ +   
Sbjct: 564 NPIHFLRQCRVLRRHG-RLGKKVSL-HLNETQRSINIS------SDGGRVCRPLIVVENA 615

Query: 614 N-----------IEWIGTFEQVFMDICITM------KEAYPGI--------TTHRELSKT 648
                       +E   T E    D  I          +Y  I        TTH E+   
Sbjct: 616 KSKIGPKEIRDIVEGFKTIEDCIKDGMIEYLDVNEENNSYIAIYENQINEHTTHLEIDPL 675

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
             L  +A LIP P  NQSPRN YQC MGKQ +GT   N   +    LY L  P  P  R 
Sbjct: 676 SILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRIDTLLYLLYYPQVPMVRT 735

Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
              D ++ D  P G NA+VAV+SY+GYD+EDA ILNK+S +RG+    +++   + ++  
Sbjct: 736 KTIDMINFDKVPAGENAMVAVMSYSGYDIEDASILNKASIDRGYQRCFVYRKADVVIKKY 795

Query: 769 YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANKALEDKL 827
            N      +    +   M+                   K++  D+ G   P  K +    
Sbjct: 796 RNGMSDRVVCPTDEERAMK-------------------KYKVLDFDGVCSPGTKLMP--- 833

Query: 828 GPDGLVYVGAKL--NERDPMYSYWKESEN-RYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
              G++Y+  +   N   P+ +     E+ R     Y G     V+ V ++S   E    
Sbjct: 834 ---GMIYLNKQAPNNTTRPITTDVPTDEDFRREALTYKGSVPSYVDKVLITSSDEE---- 886

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
            P    IG R  R P +GDKF+SR GQKG+  +    ED+PFT  G+ PD++ NPHGFPS
Sbjct: 887 -PLKIKIGLRTSRRPELGDKFSSRHGQKGVTGLIVKQEDMPFTGDGICPDVIMNPHGFPS 945

Query: 945 RMTIG 949
           RMT+G
Sbjct: 946 RMTVG 950



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +ESGY+Y G E +YSG+ G  ++A IF G V+YQ+L+HMV DK   +    +    + 
Sbjct: 984  ILIESGYSYDGKEVLYSGITGKTLRAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQ 1043

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG + +G    ERD +  Y
Sbjct: 1044 PTEGRSRDGGLRLGEM--ERDCLIGY 1067


>gi|242398379|ref|YP_002993803.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM
           739]
 gi|242264772|gb|ACS89454.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM
           739]
          Length = 1118

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 246/967 (25%), Positives = 414/967 (42%), Gaps = 161/967 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ G+   + +   ++ +I    +K   V+    E +   G         YP
Sbjct: 31  HLDSYNAFIEHGMQEVISEFEGVKPDIPDFEVKFGRVRLGEPEFQEAHG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +P+MLKSK C L NL+  +LI  G
Sbjct: 87  IDARIRNLTYSAPVFLGMIPVVKGIEQEPVEVRIGELPVMLKSKICRLYNLSDEELIAHG 146

Query: 192 EHPDEWGGYFIVGGHEKLV---RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
           E P + GGYFI+ G E+++     L  NR    I  ++N +  +   +      + +V+R
Sbjct: 147 EDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEIDERQNRYIAKCFSYRHGYRALITVER 206

Query: 249 DESA--------TNNVLHFVTNGSARFMFSHRKSMCLLG----MMQSLHE-----EGIHT 291
            +             VL FV    A  + S ++ +  +G    + Q L +       + T
Sbjct: 207 RKDGLLYVSIPNVPGVLKFVHIMRALGLESDKEIVDAVGNNPEVQQVLFDNLEDASDVQT 266

Query: 292 QHDSKVFFGQ--IFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
           Q ++  + G+  +  +  +Y LR  + +      + N +LPH+    +D   K   L  M
Sbjct: 267 QEEALDYIGKRAMPGQPKEYRLRRAHSI------IDNNLLPHMGVSPEDRIRKAYYLGMM 320

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK---------EKSGT 388
             K+  +  G+ + D +D    + +   G L        + QL+K          ++ G 
Sbjct: 321 ALKVTELSLGLREEDDKDHYASKRLKLAGDLLKDLFRVAFGQLVKDMQYQLTKTYQRKGE 380

Query: 389 SAVLKESDIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
               ++   +   + R   +   + + LATG    G+    QL+         +  N M 
Sbjct: 381 KYTFQDIQRFVRNSVRPDVLTERIEHALATGAWPGGRTGVSQLL---------DRTNYMS 431

Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
            +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L+   QI+  I
Sbjct: 432 TLSHLRRV-TSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLSLMSQITTAI 490

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPE-QALMVMLDGRIVGYILDQIATSLVPKLRML 565
           P +   ++ + L SLG++ +    +  PE     V L+G +VG   D +   L+ K++  
Sbjct: 491 PEE---EVFAYLESLGIVHIE---ERRPEPDDWRVYLNGVLVGTYKDGV--ELINKIKTD 542

Query: 566 KIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VMNL 610
           +  G +I + + + Y +   +       +Y+ +  GR+ RP               V  +
Sbjct: 543 RREG-RISEVINVAYYEDVRE-------IYINSDEGRVRRPLIIVENGVPKLTKDHVEAI 594

Query: 611 AAGNIEW-----IGTFEQVFMDICITMKEAYPGI--------TTHRELSKTDFLSNLANL 657
             G ++W     IG  E  ++D     + AY            TH E+     L   A+L
Sbjct: 595 KKGTLKWSDLIRIGVIE--YLD-AEEEENAYVATWPWEVTEEHTHLEIMPATILGLPASL 651

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           +P P+ N +PRN Y   M KQ++G    N+R +   + + +  P  P       + +  +
Sbjct: 652 VPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMEAVGFE 711

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G N IVAV+SY+GY+MEDA+I+NK+S ERG A    F++          Y   E  
Sbjct: 712 QRPAGQNFIVAVLSYSGYNMEDAVIMNKASIERGLARSTFFRT----------YEAEEKK 761

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA 837
           Y G                        +DK++  D   R    +     L  DG+ +  +
Sbjct: 762 YMGGQ----------------------TDKFEIPDPTVRGFLGEKYYRNLDEDGIAFPES 799

Query: 838 KLNERDPMYSYWKESENRYVTCRYS-------GKEEMCVEVVRMSSG------FTEGGSV 884
           K+  +D + +  + S  R++  + S       G+ E  + +     G       TE G  
Sbjct: 800 KVQGKDVLVA--RTSPPRFLEEQTSLGAGILQGRRETSITMRPGEEGIIDKIIITETGDG 857

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
           T     +  R  R P  GDKFASR GQKG+  +  P ED+P+T++G+VPD++ NPHG PS
Sbjct: 858 T-KLVKVTVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTENGIVPDLIVNPHGIPS 916

Query: 945 RMTIGFL 951
           RMT+G L
Sbjct: 917 RMTVGQL 923



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G   +A IF GV++YQRL HMV+DK   +
Sbjct: 960  GFKHSGREVMYDGITGRKFEADIFVGVIYYQRLHHMVADKLHAR 1003


>gi|406604716|emb|CCH43851.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
          Length = 1152

 Score =  249 bits (635), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 247/970 (25%), Positives = 415/970 (42%), Gaps = 170/970 (17%)

Query: 72  HIASFDFMLDEGLDLAVED----IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           H+ SF++ +D  L   ++     ++ ++ + Y K L + + +A+      PA       N
Sbjct: 70  HLDSFNYFVDVDLKKIIKANEKVLSDVDPDFYIKYLDIRVGEAS------PAA----RNN 119

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
              P E R     YS P  V V ++   K       E+G++PIML+S +C L   + A++
Sbjct: 120 MLPPHECRLRDMTYSAPIYVDVEYTRGRKIIMHKGLEIGKMPIMLRSNKCILDGASEAKM 179

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
               E P + GGYFIV G EK++ L+      + I ++ +  K           + R  K
Sbjct: 180 ASLNECPLDPGGYFIVNGTEKVI-LIQEQLSKNRIIVEADEKKQIVQASVTSSTHERKSK 238

Query: 248 RDESATNNVLHFVTNG-----------SARFMFSHRKSMCLLGMMQSLHEE--------- 287
                 N+ ++   N             A  + S  + M L+    + +++         
Sbjct: 239 TYVVTKNDKIYLKHNSISEEVPIVIVLKAAGIISDLEIMQLVCGDDAAYQDSFAINFEEC 298

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKF 339
              GI+TQ  +  F G   K   +  L  L E +E     +   ++ HL     D+ +K 
Sbjct: 299 AKVGIYTQQQALEFIGAKVKTMRRAKLSILQEGIE----AIATTVIAHLTVNDLDFREKA 354

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KSGTSAV 391
           L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K+    +
Sbjct: 355 LYIALMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNTDFKANIDKI 414

Query: 392 LKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMAENI 442
           L++ +     RA+  ++ +   + + N++ G N  +           M+ +G   +   +
Sbjct: 415 LRKPN-----RATEFDALLNINIHSNNITTGLNRAISTGNWSLKRFKMERAG---VTHVL 466

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L    
Sbjct: 467 SRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMT 526

Query: 501 QIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
            I+   E  P K L  +      +G+  ++ +  +       V L+G I+G    +  T 
Sbjct: 527 HITTDDEEEPIKKLCYL------IGVEEISVIDSASLHDNFGVYLNGTIIGTT--RFPTK 578

Query: 558 LVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV---------- 607
            V   R L+  G K+ + + I Y+   +K       +++ T  GR+ RP+          
Sbjct: 579 FVSLFRNLRRTG-KVSEFISI-YINSHQKA------VHIATDGGRICRPLIIIENGESKV 630

Query: 608 -----MNLAAGNIEWIGTFEQVFMDICITMKE--AYPGI--------TTHRELSKTDFLS 652
                + L  G +++    +Q  ++     +E   Y  +         TH E+     L 
Sbjct: 631 KAHHLLKLKQGKLQFDDFLKQGLVEYLDVNEENDCYIALYERDITEKATHLEIEPFTVLG 690

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
            +A LIP P  NQSPRN YQC MGKQ +G    N  ++    LY +  P  P  +    +
Sbjct: 691 AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFHRIDTLLYLMVYPQQPMVKSKTIE 750

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
            +D D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF    + +     L+   N+ 
Sbjct: 751 LIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRKNTTVLKRYPNH- 809

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
            T+ + +G+                 R++      +Q                 LGPDGL
Sbjct: 810 -TKDIIAGM-----------------RVKDNGEPTFQ--------------HASLGPDGL 837

Query: 833 VYVGAKL-------------NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
             VG ++             N  D + +     E R     Y   E   ++ V M++   
Sbjct: 838 AEVGTRVESGQVYINKSIPTNAADSIMN-QDTGEYRETPVVYKAPEPSYIDQVMMTTSDN 896

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           +   +      +  R  R P +GDKF+SR GQKG+C +    EDLPF D G+ PDI+ NP
Sbjct: 897 DQELIK-----VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNP 951

Query: 940 HGFPSRMTIG 949
           HGFPSRMT+G
Sbjct: 952 HGFPSRMTVG 961



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 995  ILMDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1054

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG + +G    ERD + +Y
Sbjct: 1055 PTEGRSRDGGLRLGEM--ERDCVIAY 1078


>gi|302820918|ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
 gi|300140050|gb|EFJ06779.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
          Length = 1440

 Score =  248 bits (634), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 238/895 (26%), Positives = 384/895 (42%), Gaps = 141/895 (15%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGK-------AGGTFTKEVGRVPIMLKSKRCHLRNLT 183
            P + R     YS P +V + ++  GK         G   + +GR+P+ML+S RC L   +
Sbjct: 410  PQQCRLRDMTYSAPISVDIEYTR-GKDIITRKGKDGQGAQVIGRMPVMLRSSRCILTGKS 468

Query: 184  PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----- 238
             A+L + GE P + GGYF+V G EK+            I I+    KNR ++ SD     
Sbjct: 469  DAELAKLGECPLDPGGYFVVKGTEKV------------ILIQEQLSKNRIIIDSDSTGSL 516

Query: 239  -LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM-----------MQSLHE 286
             L V++R      +  ++ +  V    A  M S ++ + ++G            MQ    
Sbjct: 517  SLAVHMRG---KLNVFSDDVPIVVVMKAMGMESDQEIIQMVGTDPKFAGILAPSMQECAS 573

Query: 287  EGIHTQHDSKVFFGQIFKEKLQYDLRHL-NEVEICDYMLTNCILPHLD----DYWDKFLC 341
             G++T H +  + G   +   Q+  +   ++V+    +L N  L H+     D+  K + 
Sbjct: 574  LGVYTTHQALEYLGTKVRVNRQWGSKQTKSKVDEARDILLNVFLAHVAVHKYDFRPKCIY 633

Query: 342  LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KSGTSAVLK 393
            ++ M  ++   +     +D  D +  + +   G L    +  L K+     KS     L 
Sbjct: 634  VALMLRRMLEAILDKECVDDRDYVGNKRLELAGQLLALLFEDLFKRSCSELKSNVDRTLS 693

Query: 394  ------ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
                  + D+  + +   + S + N +++GN +  +      M   G   +   ++ +  
Sbjct: 694  KMNRASQYDVSKSLKPDMLTSGLENAISSGNWTVKRFR----MDKKGVTQVVSRLSYIAA 749

Query: 448  MSHFRAVHRGSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
            + H   V   S F++ R  S PR L+   WG +CP  TP+G  CGL  +L     I+   
Sbjct: 750  LGHMTRV--ASQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGEGCGLTKNLALMTHITT-- 805

Query: 507  PSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATSLVPKLR 563
                 A +  +  +LG+  + L    +   + A +VM +G I+G +   Q   +L+ KLR
Sbjct: 806  -DDEEAPLIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNGTILGIHRRPQQFATLMRKLR 864

Query: 564  MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN-------------- 609
                +GE +      +++   ++       +Y+ +  GR+ RPV+               
Sbjct: 865  RAGKIGEFVS-----IFVNEKQRC------IYIASDGGRVCRPVVIADHGVSRIKEHHMK 913

Query: 610  ------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANL 657
                        L  G +E++   E+    I +  KEA    TTH E+     L   A L
Sbjct: 914  ELKDGFRTFDDFLREGLVEYLDVNEENNALIALYEKEA-DSTTTHIEIEPFTILGVCAGL 972

Query: 658  IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
            IP P  NQSPRN YQC MGKQ MG    N   +    LY L  P  P       + ++ D
Sbjct: 973  IPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYD 1032

Query: 718  NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
                G NA VAV+SY+GYD+EDA+++NK+S +RGF   CI    F  L   Y     + +
Sbjct: 1033 KLGAGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGR-CIVLKKFSCLVRKYENRTMDRI 1091

Query: 778  YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK-LGPDGLVYVG 836
             +        +Q+       Q     V ++   KD F    + K ++   L P  L    
Sbjct: 1092 VAPRQHGHATSQLL-----DQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLAL---- 1142

Query: 837  AKLNERDPMYSYWKESENRYVTCRYSGK--EEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
                          +S  R    RY G   E   V+ V +++   E   +   C     R
Sbjct: 1143 -------------PDSAYRPTPQRYKGPLGESAIVDKVLLTT--NESQQMVIKCQ---VR 1184

Query: 895  IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
              R P +GDKF+SR GQKG+C      +D PFT+ G+ PD++ NPHGFPSRMT+G
Sbjct: 1185 HTRRPELGDKFSSRHGQKGVCGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVG 1239



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G  +QA I+ G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1280 VKHGFSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLDKMHARAQGPRVVLTRQPT 1339

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    +G + +G    ERD + +Y              G   + +E + +SS   +   V
Sbjct: 1340 EGRSREGGLRLGEM--ERDCLVAY--------------GSSMLILERLMISSDQFQ-VQV 1382

Query: 885  TPNCAYIGY 893
              NC  +GY
Sbjct: 1383 CTNCGLLGY 1391


>gi|363756358|ref|XP_003648395.1| hypothetical protein Ecym_8300 [Eremothecium cymbalariae
           DBVPG#7215]
 gi|356891595|gb|AET41578.1| Hypothetical protein Ecym_8300 [Eremothecium cymbalariae
           DBVPG#7215]
          Length = 1141

 Score =  248 bits (634), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 266/1003 (26%), Positives = 426/1003 (42%), Gaps = 182/1003 (18%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L       ++ + D+ P 
Sbjct: 28  KKLTDE-INTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDP- 85

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K + + + + + S  ++   P         P E R     YS P  V + ++  
Sbjct: 86  --EFYLKYVDIRVGQRSNSS-RIDMLP---------PHECRLRDMTYSAPIYVDIEYTRG 133

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                    E+G++PIML+S +C L   +   + +  E P + GGYFIV G EK++ L+ 
Sbjct: 134 RLIVLHKDVEIGKMPIMLRSNKCILNGASEETMAKLNECPLDPGGYFIVNGTEKVI-LVQ 192

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNG----------- 263
                + I ++ +  K+          + R  K      N  ++   N            
Sbjct: 193 EQLSKNRIIVEADEKKSIVQASVTSSTHERKSKTYVVTKNEKIYLKHNSISEEVPIVIVL 252

Query: 264 SARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQYDL 311
            A  + S  + M L+    S +++             I+TQ  +  + G   K   +  L
Sbjct: 253 KACGVVSDLEIMQLVCGNNSSYQDIFAINFEEASKMNIYTQQQALEYIGTKVKTIRRQKL 312

Query: 312 RHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
             L E +E     +   ++ HL     D+ +K L ++ MT ++   +Q    +D  D + 
Sbjct: 313 TILQEGIE----AIATTVIAHLTVEALDFREKALYIAIMTRRVVMAIQNCKMVDDRDYVG 368

Query: 367 LQEIMTGGSL----YLQLLKKE----KSGTSAVLKE---SDIYAAF-----RASSIESAM 410
            + +   G L    +  L KK     K+    VLK+   +++Y A       +++I S +
Sbjct: 369 NKRLELAGQLMSLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYDALLSINVHSNNITSGL 428

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEP 468
              ++TGN S  +      M+ +G   +   ++R+ Y+S    + R  S F++ R  S P
Sbjct: 429 NRAISTGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSGP 481

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLP 525
           R L+   +G +C   TP+G  CGL+ +L     I+   E  P K L  +      LG+  
Sbjct: 482 RALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCYL------LGVED 535

Query: 526 LTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
           +  +  +       V L+G I+G    +  T  V + R+L+  G KI + + I Y    +
Sbjct: 536 IGLIDSASLHDNYGVYLNGTIIGTA--RYPTKFVHQFRILRRTG-KISEFISI-YTNIHQ 591

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEWIG 619
                   +++ T  GR+ RP++ +  G                           +E++ 
Sbjct: 592 N------AVHIVTDGGRICRPLIIVKNGKSMVASSHLKRLLDGKLQFDDFLKLGLVEYLD 645

Query: 620 TFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
             E+    I +  K+ + GI TH E+     L  +A LIP P  NQSPRN YQC MGKQ 
Sbjct: 646 VNEENDSFIALYEKDIHEGI-THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQA 704

Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
           +G    N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD+ED
Sbjct: 705 IGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIED 764

Query: 740 AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
           A++LNKSS +RGF      K     L+   N+  T+ +  G+                 R
Sbjct: 765 ALVLNKSSIDRGFGRCETRKKTTTILKRYPNH--TQDIIGGM-----------------R 805

Query: 800 LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------------NERDPMY 846
           +       WQ K               LGPDGL  VG K+             N  D + 
Sbjct: 806 VDENGEPIWQHK--------------SLGPDGLGEVGMKVESGQIYINKSVPTNASDSVL 851

Query: 847 SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFA 906
           +   +S+ R     Y   E   ++ V MS    +   +      +  R  R P +GDKF+
Sbjct: 852 T-QSQSQYREAPIIYRAPEPSHIDQVMMSVSDNDQALIK-----VLLRQNRRPELGDKFS 905

Query: 907 SRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           SR GQKG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 906 SRHGQKGVCGIIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVG 948



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I + +G+NY G + +YSG+ G  +QA +FFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 982  ILINNGFNYSGKDMLYSGITGECLQAYVFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1041

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1042 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFE-V 1084

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1085 DVCDKCGLMGY 1095


>gi|145521170|ref|XP_001446440.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413918|emb|CAK79043.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1131

 Score =  248 bits (634), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 253/982 (25%), Positives = 419/982 (42%), Gaps = 162/982 (16%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY---GKTLKLNIVKAAISEPKVPAGPVGI 124
           L   HI SF++ +++ L+  V+  +P+   I      +  L  +   +  P   +     
Sbjct: 18  LQKQHIDSFNYFIEQRLEQIVK--SPLNQRITCESDSSFLLEYLSIRVENPTFTSS---- 71

Query: 125 HFNKY------YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKR 176
            ++KY      YP E R     Y+G   V V     G+      K+V  GR+PIML SK+
Sbjct: 72  -WDKYSLKSLLYPHECRLNDQTYAGDIYVNVRIHMKGREP-IEEKDVLIGRMPIMLGSKK 129

Query: 177 CHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL---INNR---------------- 217
           C+L   T A++ + GE P +  GYFI+ G+EK++ +L   ++NR                
Sbjct: 130 CNLSGKTEAEIFQYGECPYDPKGYFIIEGNEKVILILEQVVDNRIIVDVDNKTDQYVSTV 189

Query: 218 --------RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
                       I +K+N +  +   F D  ++I             L  V +     + 
Sbjct: 190 QSYQLETKSKASIILKKNKFYVKSSSFKDAPLFI---------VFKALGIVNDKEIIELI 240

Query: 270 SHRKSMC--LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNC 327
               S+   LL   Q   +E I TQ D+  + G++   K  +  +  N  +     L   
Sbjct: 241 GTEPSIVEKLLMSFQDSSDEKIKTQLDALQYIGKLITSK--FGGQSSNLADQAREKLAQV 298

Query: 328 ILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK 383
            L H++    D++ K + L  M  +L   ++    +D +D    + +   G+L   L + 
Sbjct: 299 FLAHVNCKKYDFYPKAIYLGQMVRRLILAMEDKRFVDDKDYYGNKRMRCAGNLLELLFED 358

Query: 384 EKSG----TSAVLKES--DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL-------- 429
              G     S++LK+        F    +   M  F    +++ G N  ++         
Sbjct: 359 LFKGLNSTISSILKKELGKANCKFTPKDVTMKMKEFGV--DITKGLNRAIKTGKWTIQRF 416

Query: 430 -MQASGFVIMAENINRMRYMSHFRAVH--RGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
            M   G   + + + R+ Y S    +   R    + ++ S PR L    +G ICP  TPD
Sbjct: 417 HMDRQG---VTQLLARISYTSALGMLTKMRSQVQKTLKVSGPRALVGSQFGMICPADTPD 473

Query: 487 GTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRI 546
           G  CGL+  L     I++     +   +  +++S+G+  +     S   +  +V L+G I
Sbjct: 474 GEDCGLVKTLALLTHITQ---EDIQDSVYKIILSMGVEDICHFKPSEFHKNYIVYLNGII 530

Query: 547 VGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           VG  +       V +LR+L+  G    K  E V + + +    L   + +    GR++RP
Sbjct: 531 VG--MHARPQEFVDQLRILRRRG----KINEFVSIHKDD----LRKVVNISGDSGRLVRP 580

Query: 607 VMNLAAGNIEWIGT----FEQ-----VFMDICITMKEAYPGI------------------ 639
           ++ +  G  + I      F+Q     VF       K  Y  +                  
Sbjct: 581 LILVKDGKPQLIQIDMIDFKQNDAKTVFSSFVKNGKIEYLDVNESDNAFIALTINDVTME 640

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
           TTH E+ +   LS +  L+P P  NQS RN +QCQMGKQ++G   +N + +   +LY+L 
Sbjct: 641 TTHLEIDQMTILSCVTGLVPFPHHNQSARNTFQCQMGKQSLGIIGMNTQIRCDTQLYQLI 700

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
            P +P  R V  + ++    P G NA VAV+SY+ YD+EDA+I+NKSS +RGF    ++K
Sbjct: 701 YPQTPLVRTVSMEAVNQHRLPAGHNAQVAVMSYSCYDIEDALIMNKSSLDRGFGRTAVYK 760

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
               E E   N    E+ ++                  +R+    +    TK  F +   
Sbjct: 761 KSVTECE--INQRNKESRFN------------------ERIDEPPTKTHNTKKKFIK--K 798

Query: 820 NKALEDKLGPDGLVYVGAKL-------NERDPMYSYWKESENRYVT---CRYSGKEEMCV 869
             AL++    DG+  VGA+L       N++ P      ++EN  +      +  K    V
Sbjct: 799 YHALDN----DGITKVGAQLHHGDIYVNKKTPQVPDNPQTENIQIADTPSVFKEKWPYTV 854

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + V + +   +G         I +R  R P  GDKF+SR GQKG+  +    ED+PF + 
Sbjct: 855 DRVLIINNTNDGTEKIKTIKTI-FRQIRRPEFGDKFSSRHGQKGVVGLIVNQEDMPFNER 913

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G  PD++ NPHG+PSRMTI  L
Sbjct: 914 GWCPDLIMNPHGYPSRMTIAKL 935



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L+ G++Y G + + SG+ G  M+  ++ G + YQRL+HMV DK   +     +   +   
Sbjct: 969  LKRGFHYQGKDCLISGITGEYMECYVYQGPIFYQRLKHMVIDKIHARAKGPMEKLTRQPV 1028

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG   +G    ERD   +Y
Sbjct: 1029 EGRAKDGGQRIGEM--ERDCFLAY 1050


>gi|321468089|gb|EFX79076.1| hypothetical protein DAPPUDRAFT_305037 [Daphnia pulex]
          Length = 1134

 Score =  248 bits (634), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 233/905 (25%), Positives = 381/905 (42%), Gaps = 142/905 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L  ++PA++ ++
Sbjct: 98  PHECRLRDMTYSAPVTVDIEYTRGQQRIVRNGIPIGRMPIMLRSSNCTLAGISPAEMAKK 157

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRR-----------NHPIAIKRNAWK 230
            E P + GGYFIV G+EK++         R+++   R            H    + N   
Sbjct: 158 NECPYDCGGYFIVRGNEKVILIQEQMSKNRMIVEQDRKGNMSCQVTSSTHGTKTRTNVVV 217

Query: 231 NRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQS 283
           N+G  +        D+ V I        +   ++  +     R M S   S+      + 
Sbjct: 218 NKGKYYLKQNSFQDDIPVAIVFKAMGIVSDQEIVQMIGTDD-RVMTSFAPSL------EE 270

Query: 284 LHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
                I TQ  +    G   ++K  +        E     L   IL H+     ++  K 
Sbjct: 271 CVRASIFTQQQALGHLGNKLRQKRFFGGPKKTATEEARETLATTILAHVPVENFNFKAKA 330

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKS 386
           + L+ M  ++         +D  D    + +   GSL    +  L K+         +K+
Sbjct: 331 MYLALMIRRVIQAENDPTSVDDRDYYGNKRLELAGSLLSLLFEDLFKRMNFELKQIADKN 390

Query: 387 GTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
                  + D+    R   I + + N ++TGN +  +      M   G   M   + R+ 
Sbjct: 391 IPKIKAAQFDVIKHIRTDHITNGLENAISTGNWTIKRFR----MDRQGVTQM---LCRLS 443

Query: 447 YMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
           Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+ 
Sbjct: 444 YISGLGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITT 503

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVI-QSIPEQAL-MVMLDGRIVGYILDQIATSLVPKL 562
               + +++I     ++G+  +     + I + ++  V L+G I+G + D         L
Sbjct: 504 EAEEEPISRIAQ---NMGVEDINLFSGEEISDPSIYTVFLNGNILGLVKDY--------L 552

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYP-----GLYLFTGPGRMLRPVMNLAAGN--- 614
           R+++    K+ +    +        + +YP      +Y+ +  GR+ RP + +  G    
Sbjct: 553 RLIRYF--KLARRHGFI-----NAFVSIYPHFQTRSVYISSDGGRLCRPYIIVRKGKAAL 605

Query: 615 -----------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
                                  IE++   E+   +I +   +     TTH E+     L
Sbjct: 606 TDKHMQELADSFRTFEDFIHDGLIEYLDVNEENDSNIAVYESDINEE-TTHLEIEPFTLL 664

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A LIP P  NQSPRN YQC MGKQ MGT   N R +    LY L  P  P  +    
Sbjct: 665 GVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIACNQRNRIDTLLYNLVYPHKPMVKTRTI 724

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + ++ +N P G NA+VAV+SY+G+D+EDA +LNK+S +RG+    ++K+    L+  YN 
Sbjct: 725 ELINFENLPAGQNAMVAVMSYSGFDIEDATVLNKASLDRGYGRCLVYKNAKCALKR-YNN 783

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-----DPANKALEDK 826
             ++ +   +  +  +  I+         +H + D     D F       +P    +   
Sbjct: 784 QSSDRVNGPILDAASKKPIW---------KHDILD----ADGFAAVGQPVEPKQVLINKA 830

Query: 827 LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           +    +V V        P+  Y      R V   Y G     VE V  SS   E   +  
Sbjct: 831 MPTAPVVTVAPGAPAAVPLPEY------RDVPIAYKGAIPSYVEKVMFSSNAEEAHIIK- 883

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               I  R  R P +GDKF+SR GQKG+ ++    EDLPFT+ G+ PD++ NPHGFPSRM
Sbjct: 884 ----IQLRQTRRPEIGDKFSSRHGQKGVTALVAEQEDLPFTELGICPDVIMNPHGFPSRM 939

Query: 947 TIGFL 951
           T+G L
Sbjct: 940 TVGKL 944



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ GYNY G E M SG  G  + A I+FG V+YQ+L+HMV DK   +    R    +   
Sbjct: 978  IKHGYNYQGKECMTSGTTGEQLSAYIYFGPVYYQKLKHMVMDKMHARSRGPRAVLTRQPT 1037

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    +G + +G    ERD + +Y
Sbjct: 1038 EGRAREGGLRLGEM--ERDCLIAY 1059


>gi|240103983|ref|YP_002960292.1| DNA-directed RNA polymerase subunit B [Thermococcus gammatolerans
           EJ3]
 gi|239911537|gb|ACS34428.1| DNA-directed RNA polymerase subunit B (rpoB) [Thermococcus
           gammatolerans EJ3]
          Length = 1122

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 243/958 (25%), Positives = 412/958 (43%), Gaps = 141/958 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ GL   + +   ++ +I    +K   ++  + EP              YP
Sbjct: 33  HLDSYNAFIEHGLQEVINEFGGVKPDIPNFEVKFGKIR--LGEPIFQEAQG--QRRPLYP 88

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +    +G         +G +P+MLKSK C L  L+  +LIE G
Sbjct: 89  MDARIRNLTYSAPLFLELIPVVNGIEQEPVEVRIGELPLMLKSKACRLYGLSDEELIELG 148

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR-GLLFSDLGVYIRSVKRDE 250
           E P + GGYFI+ G E+++  + +   N  +  K    K     +FS    Y R++   E
Sbjct: 149 EDPKDPGGYFIINGSERVIVSIEDLAPNKTLVEKDERQKKVVAKVFSYRHGY-RALITVE 207

Query: 251 SATNNVLHF-VTN--GSARFMFSHRKSMCLLG---MMQSLHEE---------------GI 289
           S  + +L+  + N     +F++  R ++ LL    +++++ E+                I
Sbjct: 208 SRKDGILYVSIPNVPKPVKFVYVMR-ALGLLSDKEIVEAISEDPRIQQVLFNNLEDASDI 266

Query: 290 HTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLS 343
            TQ ++  F G++    +  +Y LR        ++++ N +LPH+    ++   K   L 
Sbjct: 267 RTQEEALDFIGRLSLPGQPKEYRLRR------AEHIIDNNLLPHMGVEPENRKAKAYYLG 320

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLKE 394
            M  K+  +  G+   D +D    + +   G L        + QL+K  +   T    ++
Sbjct: 321 MMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRK 380

Query: 395 SDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            + Y           + R   +   + + LATG+   G+    QL+  + ++        
Sbjct: 381 GERYTFENIQRFVRNSVRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYI-------- 432

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+ 
Sbjct: 433 -STLSHLRRVT-SPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITT 490

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLR 563
            IP +   ++   ++ LG++P+    +  P   L  V L+G ++G I D    +LV  +R
Sbjct: 491 GIPEE---EVKEYILKLGVVPIE---ERRPSPGLYRVYLNGVLIGTIED--GKALVQTIR 542

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VM 608
             +  G KI   + +   +      G    +Y+ +  GR+ RP               V 
Sbjct: 543 SDRRAG-KISDVINVALYEE-----GDVREIYINSDDGRVRRPLIIVENGRPKLTREHVE 596

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT----------THRELSKTDFLSNLANLI 658
            +  G + W        ++     +E    +           TH EL     L   A+L+
Sbjct: 597 AIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLV 656

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P P+ N +PRN Y   M KQ++G    N+R +   + + +  P  P         +  + 
Sbjct: 657 PYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEE 716

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
            P G N +VAV+SY GY+MEDA+++NK+S ERG A    F++   E E      G    +
Sbjct: 717 RPAGQNFVVAVLSYGGYNMEDAIVINKASIERGLARSTFFRTY--EAEEKRYLGGQMDRF 774

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRH----MVSDKWQTKDYF-GRDPANKALEDKLGPDGLV 833
              D ++   + + G  +Y+ L          K + KD   GR    + LE++ G  G+ 
Sbjct: 775 EKPDPTI---KGYLGDRYYRNLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIA 831

Query: 834 YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                              E R  +      E+  V+ V +    TE G  T     +  
Sbjct: 832 L-----------------QERRETSVAVRPSEKGIVDKVII----TETGDGT-KLVKVTV 869

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R  R P +GDKFASR GQKG+  +  P ED+P+T++G+VPD++ NPHG PSRMT+G L
Sbjct: 870 RDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTENGIVPDLIVNPHGIPSRMTVGQL 927



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 964  GFKHTGREVMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHAR 1007


>gi|443693201|gb|ELT94631.1| hypothetical protein CAPTEDRAFT_178602 [Capitella teleta]
          Length = 1134

 Score =  248 bits (633), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 237/886 (26%), Positives = 382/886 (43%), Gaps = 104/886 (11%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L    PA+L + 
Sbjct: 95  PHECRLRDMTYSAPITVDIEYTRGSQRIVRNNLPIGRMPIMLRSSNCVLVGKVPAELAKL 154

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRR-----------NHPIAIKRNA-- 228
            E P + GGYFIV G EK++         R++++  +            H    K N   
Sbjct: 155 QECPIDPGGYFIVRGVEKVILIQEQLSKNRMIVDTDKKGNAMCSVTSSTHERKSKTNVIM 214

Query: 229 -----WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQS 283
                +     L  DL + I        +   ++  V  GS   + +      +   ++ 
Sbjct: 215 KHHKYYIQHNTLSEDLPIAIALKAMGIESDQEIVQMV--GSEEMVLA-----AMAPCLEE 267

Query: 284 LHEEGIHTQHDS-KVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-DYWDKFLC 341
            H   ++TQ  + K   G++ + ++       ++ E    +L   I+ H+    W+  + 
Sbjct: 268 CHRAQVYTQVQALKYMGGKVRQRRIWGGGAKKSKAEEARELLQGTIIAHVPVTNWNFKVK 327

Query: 342 LSHMTCKLFHVV--QG-MVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLK- 393
            S+    L   +  QG  + +D  D +  + +   G L    +  L KK  S    +   
Sbjct: 328 ASYTALMLRRCILAQGNTMNVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSELKRIADM 387

Query: 394 --------ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
                   + DI    R   I + +T+ +++GN S  +      M   G   + + ++R+
Sbjct: 388 TIPKPRAAQFDIVKHMRQDQITNGLTHAISSGNWSIKRFK----MDRQG---VTQVLSRL 440

Query: 446 RYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     ++
Sbjct: 441 SFISALGHMTRITSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHVT 500

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
             +P + + ++   L    +  L+    + P    +V+L+G I+G I +     LV   R
Sbjct: 501 TDLPEESIIRLAHNLGVEDIHFLSGDELTSP-LIYLVLLNGNILGVIRE--YRRLVRTFR 557

Query: 564 MLKIVG------EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML-RPVMNLAAGN-- 614
            ++  G         P     V     + G    P + +  G  R+  R +  L  G   
Sbjct: 558 RMRRAGYVSEFVSISPNHAHRVVHIASDGGRVCRPYIIVENGEPRVKDRHIQELTQGVRC 617

Query: 615 ---------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
                    +E++   E+    I +   E +   TTH E+     L   A LIP P  NQ
Sbjct: 618 FEDFLQEGLVEYLDVNEENDCFIALYESEIHKE-TTHLEIEPFTILGVCAGLIPYPHHNQ 676

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRN YQC MGKQ MGT   N R +    +Y L  P +P  +    D +  D  P G NA
Sbjct: 677 SPRNTYQCAMGKQAMGTIGYNQRNRIDSLMYLLCYPQAPMVKTKTIDLIGFDKIPAGQNA 736

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
            VAV+SY+GYD+EDA+ILNK+S +RGF    ++++  + L+     Y  +T +  V G M
Sbjct: 737 TVAVMSYSGYDIEDALILNKASLDRGFGRCLVYRNAKVALKR----YANQT-FDKVMGPM 791

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM 845
           + A+        Q  RH + D         +    + L +K  P         +N     
Sbjct: 792 IDAE-----TKKQIWRHDILDMDGICSPGEKVENKQLLVNKYMPT------VTINPLQSS 840

Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
               ++ E R V   Y G     +E V +SS   E   +      I  R  R P +GDKF
Sbjct: 841 GGQPQQPEYRDVPLGYKGPMPSYIEKVMISSNEEEAFIIK-----ILLRQTRRPEIGDKF 895

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +SR GQKG+C +  P  D+PF++ G+ PDI+ NPHG+PSRMT+G L
Sbjct: 896 SSRHGQKGVCGLIVPQADMPFSNLGICPDIIMNPHGYPSRMTVGKL 941



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G+NY G + + SG+ G  + A IFFG + YQ+L+HMV DK   +    R    +   
Sbjct: 975  VKHGFNYLGKDFVTSGITGEPLSAYIFFGPIFYQKLKHMVIDKMHARAKGPRAVLTRQPT 1034

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1035 EGRSRDGGLRLGEM--ERDCLIGY 1056


>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
          Length = 1149

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 250/1005 (24%), Positives = 422/1005 (41%), Gaps = 172/1005 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L        L + D+ P 
Sbjct: 24  KRLTDE-INTAEDKWNLLPAFLKIKGLVKQHLDSFNYFVDVDLKKILKANSLVLSDVDP- 81

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             + Y K + + +   + S P       G       P E R     YS P  V V ++  
Sbjct: 82  --DFYVKYIDIRVGHKSTSPP-------GTKEVILPPHECRLRDLTYSAPIYVDVEYTRG 132

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---- 210
            K    +  E+GR+PIML+S +C L  +    + +  E P + GGYFIV G EK++    
Sbjct: 133 RKIIRHYDLEIGRMPIMLRSNKCMLDGMDDKMMAQVDECPLDPGGYFIVNGTEKVILVQE 192

Query: 211 -----RLLI-----------------NNRRNHPIAIKRN--AWKNRGLLFSDLGVYIRSV 246
                R+++                 + R++    I +N   +     +  D+ + I   
Sbjct: 193 QLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIVLK 252

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
               ++   +L  V   ++ +     + + ++   ++   E + TQ  + ++ G+  K  
Sbjct: 253 AAGVTSDLEILQLVCGSNSNY-----QDLFVVNFEEAAKLE-VFTQQQALLYLGKRVKTI 306

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
            +     L++++     +   I+ HL      + +K L ++ M  ++   +     +D  
Sbjct: 307 RRAGAPKLSQLQEGIEAIATTIIAHLTVVDLQFREKALYMAVMARRVIMAMHNPKMVDDR 366

Query: 363 DSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
           D +  + +   G L    +  L KK  S   A + +  +    R S  ++ ++  + + N
Sbjct: 367 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANI-DKILKKPSRTSEFDALLSINIHSNN 425

Query: 419 VSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
           ++ G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S 
Sbjct: 426 ITMGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSG 482

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
           PR L+   +G +C   TP+G  CGL+ +L     I+       + ++ + L    +L L 
Sbjct: 483 PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEENPIKKLCTALGCESILGLD 542

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
                + E    + L+G ++G    +     V   R L+  G+    +   +Y    ++ 
Sbjct: 543 SATLHV-EGNFGIYLNGTLLGTT--RFPVKFVTDFRRLRRAGK--VSAFVSIYTNSHQQA 597

Query: 588 MGLYPGLYLFTGPGRMLRPVMN--------------------------LAAGNIEWIGTF 621
                 +++ T  GR+ RP++                           L  G +E++   
Sbjct: 598 ------VHIATDGGRICRPLIIVENNKSKVEAKHLTKLLNGEWEFDDFLKEGLVEYLDVN 651

Query: 622 EQVFMDICITMKE--AYPGIT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           E+    I +  K+    P  T TH E+     L  +A LIP P  NQSPRN YQC MGKQ
Sbjct: 652 EENDSLIALYEKDIGENPNATVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 711

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
            +G    N   +    LY +  P  P  +    + ++ D  P G NA VAV+SY+GYD+E
Sbjct: 712 AIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELINYDKLPAGQNATVAVMSYSGYDIE 771

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DA++LNKSS +RGF    + +   ++L+   N+  T+ + SG+        IF       
Sbjct: 772 DALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNH--TKDILSGMRVDENDEPIF------- 822

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------------NERDPM 845
                                ++A    LGPDGL  VG+++             N  D  
Sbjct: 823 --------------------PHRA----LGPDGLGEVGSRIENGQVYANKCVPTNSGDSS 858

Query: 846 YSYWKESEN-RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
               ++ EN R     Y G E   V+ V MS    +   +      +  R  R P +GDK
Sbjct: 859 LGQPQQVENHREAPLFYKGPEPSYVDQVMMSVSDNDQALIK-----VLLRQTRRPELGDK 913

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           F+SR GQKG+C +    EDLPF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 914 FSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVG 958



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN S  Y   F    + +   I +E G++Y G + +YSG+ G  +QA IFFG ++YQ
Sbjct: 968  AGVLNGSLEYGTCFGGSKLEEMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQ 1027

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
            +L+HMV DK   +    R    +   +    DG + +G    ERD + +Y          
Sbjct: 1028 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM--ERDCVIAY---------- 1075

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                G  ++ +E + +SS   E   V   C  +GY
Sbjct: 1076 ----GASQLLLERLMISSDAFE-VDVCNKCGLMGY 1105


>gi|407404504|gb|EKF29929.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi
            marinkellei]
          Length = 1591

 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 191/634 (30%), Positives = 306/634 (48%), Gaps = 69/634 (10%)

Query: 364  SIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRA-SSIESAMTNFLATGNVSAG 422
            S + Q I+  G    +L   E SG    L++   Y   R+ +    A+   L TGN++  
Sbjct: 765  SHLFQSILQLG----ELPGNESSGFINQLRQYTEYCERRSINEPLDALHRLLITGNLTLD 820

Query: 423  KNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPV 482
            +       Q SG+V+MAE++N  R+    R +HRG    EMRSSE R+   +A+GFIC V
Sbjct: 821  REEDFYCPQTSGWVVMAEHLNFYRFFEQLRCLHRGKTIAEMRSSEVRKYPCEAFGFICMV 880

Query: 483  HTPDGTPCGLLNHLTTNCQISEYIPS------KVLAQIPSVLVSL---GMLP--LTPVIQ 531
            H+PDG  CG+LNH++ +  +SE +PS       +LA+I      L   G L   +  ++ 
Sbjct: 881  HSPDGADCGVLNHMSVSTFVSESVPSGSRNEDDLLARIAEEFHGLRNGGSLDSLIDRLVG 940

Query: 532  SIPEQALMVMLDGRIVGYI----LDQIATSLVPK--------LRMLKIVGEKIPKSLEIV 579
            ++P     V ++G+++GY+     +++  +L+ K        + +  IV      +  ++
Sbjct: 941  TVP-----VWVEGKMLGYLAPEEAERVGNALIRKKALKTRSNMELSGIVRRHSVNAFSMI 995

Query: 580  YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------IEWIGTFEQVFMDICIT 631
             +     G     GLY+F   GRM+RPV  + + +        + +IGT+EQ ++DI   
Sbjct: 996  EVVYVPPGNKDPQGLYIFYDNGRMMRPVQQIESTSRGEDLPFPLVYIGTWEQTWLDIASV 1055

Query: 632  MKEAYPGITT------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
              +   G+T         E + ++ LS  +  IP  + N SPRN++QC + KQ+ GT   
Sbjct: 1056 PSDLLDGVTQLNRKYEFMEQNGSNILSLTSATIPFFEHNCSPRNLFQCGLSKQSAGTQLQ 1115

Query: 686  NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
            +  ++   KL+R+  P     R +  D   +D+  +G NA++A+++YTGYD++DA+ILN 
Sbjct: 1116 SLAWRKEAKLFRMYCPQRYISRTLAMDYYGLDDVNLGVNAVIAILAYTGYDLDDAVILNS 1175

Query: 746  SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            ++ + G     I  +  I   SG        ++  +   +   Q F   +    L    +
Sbjct: 1176 TASQFGMLTAGITVAKII-TASGKGEKDDVFVFQNL---LSNGQPFTPELDAHGLPRKRA 1231

Query: 806  DKWQTKDY-FGRDPANKALEDKLGPDGLVYVGAKLNER-DPM-----YSYWKESENRYVT 858
                T+   F  D     L D       VY  AK  ER DP+     Y Y +    ++  
Sbjct: 1232 VPGTTELLSFDSDHKYPTLRD----SSAVYCCAKRYERIDPLMNKKVYEYTRHHVTKW-- 1285

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
             ++   E   V  V      T  G   P  A + +RI R P +GDKF+SR GQKG   + 
Sbjct: 1286 WQFDKGENAWVHSV---VPLTYDGP-DPTSALVVFRIPRPPAIGDKFSSRHGQKGTLPLH 1341

Query: 919  WPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
              A DLPF T  G+ PDI+ NPH FPSRMT+G +
Sbjct: 1342 IRAHDLPFSTRDGITPDIIINPHAFPSRMTVGMV 1375



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN YG E +  G+ G  M+A +F G+  YQRLRHMV+DKWQ +
Sbjct: 1415 KAGYNRYGREKLIDGISGEEMEADVFMGISGYQRLRHMVNDKWQAR 1460



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 169 PIMLKSKRCHLRNL-TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M++  RC LR + T        E   E GGYFI+ G E+++R L+  R N P+ I R 
Sbjct: 451 PEMVRGARCSLRGVDTRNDHFRAFEEQKEVGGYFIMRGGERILRALLMQRCNVPLNIFRE 510

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            + ++G  FS   V IR  +       N  ++ T G   F F+ +
Sbjct: 511 RFSSQGPFFSPKAVVIRCKRPSGLTIQNYFYYATTGEVVFSFARK 555


>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
           Directed Rna Polymerase
 gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
           P21 Space Group
 gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
           P21 Space Group
 gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
 gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
          Length = 1131

 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 253/966 (26%), Positives = 412/966 (42%), Gaps = 158/966 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +   L   +++   I  EI G  LK+ + K  I +P+V     G    +  P
Sbjct: 30  HLDSYNDFVRNKLQEIIDEQGEIPTEIPG--LKVRLGKIRIGKPRVRESDRG--EREISP 85

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +          +G +PIMLKS    +   T  +LIE G
Sbjct: 86  MEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIG 145

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           E P + GGYFIV G E+++         R+L++  +        N      ++ S  G  
Sbjct: 146 EDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGS-----NITHTAKIISSTAGYR 200

Query: 243 IR-SVKRDESATNNV--------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------ 287
           +  +++R +  T +V        + FV    A  + + R  +  + +   +  E      
Sbjct: 201 VPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEIQNELFPSLE 260

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFL 340
               I    D+  F G     ++    +  N +E    ++    LPHL    DD   K  
Sbjct: 261 QASSIANVDDALDFIGS----RVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAY 316

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL----------------QLLKKE 384
            L++   K+  +  G  + D +D    + +   G L+                 QL K +
Sbjct: 317 YLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSK 376

Query: 385 KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
             G    LK     A  R   +   + + LATGN   G+    QL+  + ++ M      
Sbjct: 377 VRGRKLALK-----ALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSM------ 425

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    QI+ 
Sbjct: 426 ---LSHLRRVI-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAV 481

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIA 555
            I  K++ +    L  +G++P+  VI+ + E         +   V+L+GR+VGY  D   
Sbjct: 482 GINEKIVEK---TLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRD--G 536

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN- 614
             L  K+R  +  GE I   + + ++            +++    GR+ RP++ ++ GN 
Sbjct: 537 EELAKKIRERRRKGE-ISDEVNVGHIV-----TDFINEVHVNCDSGRVRRPLIIVSNGNP 590

Query: 615 ------IEWIGTFEQVFMDICITMK----------EAYPGIT--------THRELSKTDF 650
                 IE + +    F D+    K           AY  +         TH E+     
Sbjct: 591 LVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSPAI 650

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A++IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +   
Sbjct: 651 LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRA 710

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            D +   N P G NAI+AVIS+TGY+MED++I+N+SS ERG     +++S F  L     
Sbjct: 711 LDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERG-----MYRSTFFRL----- 760

Query: 771 YYGTETMYSG--VDGSMMQ---AQIFFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKAL 823
           Y   E  Y G   D  +M     + + G  +Y+ L    +VS + + K           L
Sbjct: 761 YSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVK-------GGDVL 813

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             K+ P   +    +  E  P  +    S    +  R+    EM +  + + +   EG  
Sbjct: 814 IGKVSPPRFL---QEFKELSPEQAKRDTS----IVTRHG---EMGIVDLVLITETAEGNK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +      +  R  R P++GDKFASR GQKG+  +  P  D+P+T  G+VPD++ NPH  P
Sbjct: 864 LVK----VRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALP 919

Query: 944 SRMTIG 949
           SRMT+G
Sbjct: 920 SRMTLG 925



 Score = 48.1 bits (113), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY    TE  Y G  G  ++++I+FGVV+YQ+L HMV+DK   +
Sbjct: 961  LKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHAR 1007


>gi|315230005|ref|YP_004070441.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
 gi|315183033|gb|ADT83218.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
          Length = 1118

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 247/966 (25%), Positives = 407/966 (42%), Gaps = 159/966 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +D G+   + +   I+ +I    +K   ++    E +   G         YP
Sbjct: 31  HLDSYNAFIDHGMQEVINEFGGIKPDIPNFEVKFGKIRLGEPEFQEAQG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     Y+ P  + +    +G         +G +PIMLKSK C L   +  +LI+ G
Sbjct: 87  MDARIRNLTYAAPIYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGKSEEELIKLG 146

Query: 192 EHPDEWGGYFIVGGHEKLV----------RLLINNRRNHPIAIKRNAWKN--RGLLFSD- 238
           E P + GGYFI+ G E+++           L+  + R   +  K  ++++  R L+  + 
Sbjct: 147 EDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEKDERQDKVVAKCFSYRHGYRALIAVER 206

Query: 239 -----LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG----MMQSLHE--- 286
                L V I +V         V+ FV    A  + S ++ +  +     + Q L +   
Sbjct: 207 RKDGLLYVSIPNVP-------GVVKFVYVMRALGLESDKEIVDAISDDPRIQQVLFDNLE 259

Query: 287 --EGIHTQHDSKVFFGQ--IFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDK 338
               I TQ ++  + G+  +  +  +Y LR        + ++ N +LPH+    +D   K
Sbjct: 260 DASDIQTQEEALDYIGKKALPGQPREYRLRR------AESIIDNNLLPHMGVRPEDRIKK 313

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK------- 383
              L  M  K+  +  G+   D +D    + +   G L        + QL+K        
Sbjct: 314 AYYLGMMALKVLELSLGLRGEDDKDHYANKRLRLAGDLLRDLFRVAFGQLVKDMQYQLTK 373

Query: 384 --EKSGTSAVLKESDIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
             ++ G   V +    +   + R   +   + + LATG    G+    QL+         
Sbjct: 374 TYQRKGEKYVFENVQRFVRNSVRPDVLTERIEHALATGAWPGGRTGVSQLL--------- 424

Query: 440 ENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           +  N M  +SH R V      ++    E R L    WG ICP  TP+G  CGL+ +L   
Sbjct: 425 DRTNYMSTLSHLRRVT-SPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALM 483

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE-QALMVMLDGRIVGYILDQIATSL 558
            QI+  IP +       VL  L  L +  + +  P      V L+G ++G + D IA  L
Sbjct: 484 AQITTAIPEE------EVLKYLRKLGIVSIEERRPNPHVWRVYLNGVLIGTVEDGIA--L 535

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP------------ 606
           V +++  +  G KI   + + Y     +       +Y+ +  GR+ RP            
Sbjct: 536 VNRIKADRRAG-KISDVINVAYYDDVRE-------VYINSDDGRVRRPLIVVENGVPKLT 587

Query: 607 ---VMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT----------HRELSKTDFLSN 653
              V  +  G + W    +   ++     +E    + T          H EL     L  
Sbjct: 588 KEHVEGIKNGTLTWSDLIKMGVIEYLDAEEEENAYVATWPWEVTKEHTHLELMPAAILGI 647

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
            A+L+P P+ N +PRN Y   M KQ++G    N+R +   + + L  P  P         
Sbjct: 648 PASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKA 707

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
           +  +  P G N +VAV+SY GY+MEDA+++NK+S ERG A    F++   E +    Y G
Sbjct: 708 VGFEERPAGQNFVVAVLSYQGYNMEDAIVINKASIERGLARSTFFRTYEAEEK---KYLG 764

Query: 774 TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD-------KWQTKDYF-GRDPANKALED 825
            +T    +    ++   + G  +Y   RH+  D       K   KD   GR    + LE+
Sbjct: 765 GQTDKFEIPDPTVRG--YRGEKYY---RHLDEDGIIFPESKVSGKDVLVGRTSPPRFLEE 819

Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
           + G  G++                   E R  +      E+  V+ V +    TE G  T
Sbjct: 820 QSGLGGIIL-----------------QERRETSIAVRPSEKGVVDKVII----TETGDGT 858

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                +  R  R P +GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSR
Sbjct: 859 -KLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSR 917

Query: 946 MTIGFL 951
           MT+G L
Sbjct: 918 MTVGQL 923



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 960  GFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHAR 1003


>gi|302348973|ref|YP_003816611.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
           345-15]
 gi|302329385|gb|ADL19580.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
           345-15]
          Length = 1179

 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 233/940 (24%), Positives = 388/940 (41%), Gaps = 153/940 (16%)

Query: 100 GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG 159
           G  +K+ + K  I EP+V      +      P EAR     YS P  + +    +G    
Sbjct: 71  GPDIKIVLGKIRIGEPQVKEADGNLRRKDVTPLEARLRNFTYSAPLFLQMKLVENGTEVY 130

Query: 160 TFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV--------- 210
           +   +VG  PIM+KS    L   +  +L+E GE P++ GGYFI+ G E++V         
Sbjct: 131 SDEVKVGDFPIMVKSVIDPLSKASYRELLEAGEDPNDPGGYFIINGSERVVVAQEDLAVN 190

Query: 211 RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR-----SVKRDESATNNVLHFVTNGSA 265
           R+++     +   I  +A     +L     V +      S++   S  N  + F+    A
Sbjct: 191 RIIVGVSTANTAKITHSAKTVSTILGLRRQVIVDRMSDGSLEVSMSRLNYRIPFIVMMKA 250

Query: 266 RFMFSHRKSMCLLGMMQSLHEE----------GIHTQHDSKVFFGQIFKEKLQYDLRHLN 315
             +    +    +     +  E           I T+ D+  F G         ++R   
Sbjct: 251 LGLEKDAEIAAAVSPDPDVQRELLPSFEKVSAAIRTKEDALEFLGNRIATGQPREIR--- 307

Query: 316 EVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
            ++  +  +    LPH+     D   K   L  M  ++  +  G  Q D +D +  + + 
Sbjct: 308 -IQRAEEFIDTQFLPHIGLTPADRLAKAYFLGEMANRVLQLYLGKRQEDDKDHLANKRLR 366

Query: 372 TGGSLYLQLLKKEKSGTSAVL------------KESDIYAAFRASSIESAMTNFLATGNV 419
             G L  ++ +      + ++            K  D+ +  R   I   +   LATGN 
Sbjct: 367 LAGDLIAEIFRDAFQQLATLIASELEEYISQHRKVRDLRSLVRPDIITERVRAALATGNW 426

Query: 420 SAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV----HRGSYFQEMRSSEPRQLRTDA 475
           +  +    Q +         +  N M  +SH R V     RG       + E R L    
Sbjct: 427 TGNRTGVSQAL---------DRTNWMSLLSHLRRVISPLSRGE-----SNFEARDLHGTH 472

Query: 476 WGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI-- 533
           WG +CP  TP+G  CGL+ +L     IS  +  +    + ++L+S+ ++PL   I+ I  
Sbjct: 473 WGRLCPFETPEGINCGLVKNLAMTAYISVGVNEQ---HVKNILMSMDLIPLDDAIKEIAS 529

Query: 534 --PE------QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
             PE          V L+G+ +GY+ D     L  KL  ++  G  +   + + Y+++  
Sbjct: 530 GEPEAIEKYTNMAKVFLNGKPIGYVQD--GAELRRKLIAMRRSG-SLSYEVSVAYIEQ-- 584

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------IEWIGTFEQVFMDICIT------- 631
              G    +Y+ T  GR++RPV+ +  G        +E +   E  F D+          
Sbjct: 585 ---GGIKEVYINTDEGRLMRPVIVVENGKPKLTKEMVEKVKRGEMSFWDLVRNGVIEFLD 641

Query: 632 --------MKEAYPGIT---THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
                   + E+   +T   TH E+      S + ++ P  + NQSPRN YQ  M KQ +
Sbjct: 642 PDEEENAYVAESPEEVTPEHTHLEMWTPGIFSVVTSITPFLEHNQSPRNTYQAAMAKQAL 701

Query: 681 GTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDA 740
           G   LN++Y+     Y L  P  P  +    + +  ++ P G N IVA++ Y GY+MEDA
Sbjct: 702 GLYALNYQYRMDSHAYLLHYPQKPIVQTRSLEEIGYNDRPSGQNFIVAIMPYMGYNMEDA 761

Query: 741 MILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRL 800
           +I+NK+S + G      F+           Y   E  Y+G     +        V   +L
Sbjct: 762 IIMNKTSVDYGLGRAHFFRV----------YTVMENTYAGGLKDTI-------TVPSPKL 804

Query: 801 RHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES------EN 854
                D++ T               KLGPDG++    +++  D +    +ES      E 
Sbjct: 805 YDHKGDQYYT---------------KLGPDGIIEPEVEVDGGDVLVG--RESPPRFLGEE 847

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRA 909
           R ++     K +  V++     G  +   +T          +  R  R P +GDKFASR 
Sbjct: 848 RVMSLGTLTKRDTSVQLRYGEHGVVDTVLITQTTDRNLLVKVKVRDLRIPELGDKFASRH 907

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           GQKG+  + +P  D+P+T+ G+VPDI+ NPHG PSRMT+G
Sbjct: 908 GQKGVVGMLYPKYDMPYTEDGIVPDIIINPHGIPSRMTVG 947



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 762  FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
             I ++ GY+  GTE MY G  G +++  I  GVV YQRL HMV+DK   +
Sbjct: 980  IILIKHGYSPDGTEVMYDGRTGQLLETPISIGVVFYQRLYHMVADKMHAR 1029


>gi|256081821|ref|XP_002577166.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043958|emb|CCD81504.1| putative dna-directed RNA polymerase III subunit [Schistosoma
           mansoni]
          Length = 1128

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 243/939 (25%), Positives = 401/939 (42%), Gaps = 167/939 (17%)

Query: 112 ISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIM 171
           I  P V  G  G+  ++  P + R     Y+G   V V +    +        +GR+PIM
Sbjct: 59  IKPPTVNDG--GVVASRVTPHDCRLRDLTYAGEILVDVTFVRQNEVVSKKGVLIGRMPIM 116

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           LKS  C L   +P++L+   E P + GGYFI+GG EK+V +     +N  I I+ ++   
Sbjct: 117 LKSSICVLNGKSPSELMRLKECPLDPGGYFIIGGTEKVVLMQEQTSKNRLI-IEEDS--K 173

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS------------ARFMFSHRKSMCLLG 279
           RGL+ S      ++  +    T +   ++++ S            A  + S ++ + L+G
Sbjct: 174 RGLVCSVTSSSAQTKSKTNIVTKDDKFYLSHNSFIVDVPIAILFKAMNITSDQELLQLIG 233

Query: 280 MMQSLH-----------EEGIHTQHDS-------------KVFFGQIFKEKLQYDLRHLN 315
             +S+            E  IHT  D+             +  FG     +   ++   +
Sbjct: 234 TEESVWANFVPSLKLCLEYNIHTCLDACNWLHSRLRQPRYRTAFGAGRTLRTAANILETD 293

Query: 316 EVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
            +      L + I+ H++    ++  +   L  M   L    +  +  D  D    + I 
Sbjct: 294 IILEIQRFLRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIPPDDRDFYGNKRIE 353

Query: 372 TGGSLYLQL-------------LKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
             GSL   L             L   K  T       DI    +   I   +   +++GN
Sbjct: 354 LAGSLLALLFEDVFKTFNEDLWLTVSKIDTKRRCTPFDISRHIKTWMITEQLNRAISSGN 413

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAW 476
               +    ++M+      + + ++R+ Y++    + R  S F++ R  S PR +    W
Sbjct: 414 WIIKR---FRMMRHG----VTQVVSRLSYVAALGHMTRMTSQFEKTRKVSGPRSIHASQW 466

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ 536
           G ICP  TP+G  CGL+ ++   C ++  +    L ++ S   +  +  +        + 
Sbjct: 467 GLICPSDTPEGEACGLVKNVALMCHVTVEVDDAHLIELISNYYTFPLYQM-----RYAKN 521

Query: 537 ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYL 596
             ++ ++G+ +G+   Q    L   +R L+  G         VY+K+       Y  +++
Sbjct: 522 EYVIYVNGKPIGFT--QHPGKLCVLIRGLRRSGR--IHGFVSVYIKQA------YQCVHV 571

Query: 597 FTGPGRMLRP----------------------VMN----LAAGNIEWIGTFEQ----VFM 626
            +  GR  RP                      V+N    L  G +E++   E     V M
Sbjct: 572 VSDGGRFCRPYIILCNGRPLVTESVLQDLRHNVLNWDDLLKKGLVEYLDVNELNDCLVAM 631

Query: 627 D-ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           D  C+T    Y    TH E+     L  +A LIP PD NQSPRN YQC MGKQ +GT  L
Sbjct: 632 DESCLTDGNHY----THMEIDPATILGVVAGLIPYPDHNQSPRNTYQCAMGKQAIGTVAL 687

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N + +      ++  P  P  +      +  D  P G NA+VA++SY+GYD+EDA+++N+
Sbjct: 688 NQQIRFDTLQCQMVYPQKPLVQSKTIQMMHFDELPAGQNAVVAIMSYSGYDVEDALVINQ 747

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           +S +RGFA  C+++   + L+   N      +Y  + G  ++ +   GV+          
Sbjct: 748 ASIDRGFARACVYRRSGVHLKMHEN-----AVYDRLMGPSIERET--GVL---------- 790

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESEN---- 854
                          +  ++ L  DG+ Y+GA +N+R        P+ S     +N    
Sbjct: 791 ---------------RRGDEVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSL 835

Query: 855 RYVTC--RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
           ++  C   Y G E   VE V  S+  +EG         I  R  R P VGDKF+SR GQK
Sbjct: 836 KFKRCPVDYKGIEPSYVEKVMFST--SEGNQAV---VKILLRQTRRPEVGDKFSSRHGQK 890

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G+  +    EDLPF+ +GL PDI+ NPHGFPSRMT+G L
Sbjct: 891 GVVGLIVRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKL 929



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ GY+Y G E +YSGV G+ ++A I+FG V+YQRL+HMV DK   +         +   
Sbjct: 963  IDHGYHYLGKEILYSGVTGAPLEAFIYFGPVYYQRLKHMVMDKVHARSRGPVTALTRQPT 1022

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
            +    +G + VG    ERD   +Y             S   + CV
Sbjct: 1023 EGRSREGGLRVGEM--ERDCFIAYGTSQLLLERLLLSSDAYDACV 1065


>gi|71013466|ref|XP_758593.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
 gi|46098251|gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
          Length = 1169

 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 240/963 (24%), Positives = 400/963 (41%), Gaps = 135/963 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+++ +D  L   ++    I  +I  K   L      + EP+   G          P
Sbjct: 66  HIDSYNYFVDHDLKNIIKANEKITSDIDPK-FYLKYTDITVGEPRRYDGDA--LQRPITP 122

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     YS    V + ++  GK        +GR+P+ML+S +C L N +  +L +  
Sbjct: 123 HECRLRDITYSAHIFVNIEYTRGGKIIRRKNVAIGRIPVMLRSNKCVLANKSEKELAKMS 182

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDES 251
           E P + GGYF+V G EK++ +     +N  I     A   +G + + +       K    
Sbjct: 183 ECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV---EADTKKGTVSASVTSSTHERKSKSY 239

Query: 252 A---------TNNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE----------- 287
                      +N LH          A  + + R+ + L+     +H+E           
Sbjct: 240 VLTKHGKIYLKHNSLHEDIPIAVAFKAMGIQADREILQLVAGHDDIHKELFAINLEEAAR 299

Query: 288 -GIHTQHDSKVFFGQIFKEKLQ-YDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
            GI+T+  +  F G   K   +   +R     E  D +L   I+ H+     ++  K + 
Sbjct: 300 LGIYTRKQALDFIGARAKASRKPLSMRRPLSEEALD-VLATVIMAHVPVERLNFRPKAIY 358

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS----GTSAVLK 393
           ++ M  ++   +Q   ++D  D +  + +   G L    +  L KK  S        VLK
Sbjct: 359 IASMVRRVLMAMQDEKKVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDLKMNIDKVLK 418

Query: 394 ESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
           + +    F A          I S     ++TGN S  +      M+ +G   +   ++R+
Sbjct: 419 KPNRTVEFDAFNQFHFNGDYITSGFVRAISTGNWSLKRFK----MERAG---ITHVLSRL 471

Query: 446 RYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+
Sbjct: 472 SFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHIT 531

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
             +  + +A+I   L    +  LT      P+ + +V L+G ++G  + +     V + R
Sbjct: 532 TDVEEEPIARIAFTLGVEDIHLLTGAELYRPD-SYVVYLNGNVLG--VTRFPQRFVLQFR 588

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA----------- 612
            L+  G         VY     +       +Y+ +  GR+ RP++ + A           
Sbjct: 589 RLRRAGR--VSEFVSVYTNHHHQT------VYIASDGGRICRPLIIVDAFTGHPRVTESH 640

Query: 613 -----------------GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLA 655
                            G IE++   E+   +I +   E  P  TTH E+     L  +A
Sbjct: 641 MQQLKSGARRFDDFLHNGLIEYVDVNEENDANIAMYEHEIKPQYTTHLEIEPFTILGAVA 700

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
            LIP P  NQSPRN YQC MGKQ  G    N   +    LY +  P  P  +    + + 
Sbjct: 701 GLIPYPHHNQSPRNTYQCAMGKQGQGAIGYNQLIRIDTLLYLMLYPQQPMVKSRTIELIG 760

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
            D  P GTN++VAV+SY+GYD+EDA++LNK+S +RGF      K     +    N     
Sbjct: 761 YDKLPAGTNSMVAVMSYSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDR 820

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK-----LGPD 830
              + VD +  + Q  + ++    +  +     Q   Y  +     A ++      +G  
Sbjct: 821 LADAPVDDTTGKRQKRYDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIGAS 880

Query: 831 ----GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
                + Y  A L+ + P+  Y     ++ +       + +   ++R +           
Sbjct: 881 NAAASVAYKSAPLSYKPPVSGYI----DQVLITDTDSDQTLIKALIRQT----------- 925

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
                     R P +GDKF+SR GQKG+C +    ED+PFTD G+ PDI+ NPHGFPSRM
Sbjct: 926 ----------RRPELGDKFSSRHGQKGVCGLIVQQEDMPFTDQGINPDIIMNPHGFPSRM 975

Query: 947 TIG 949
           T+G
Sbjct: 976 TVG 978



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +E+GYNY G ET+ SG+ G  ++  ++FG ++YQRL+HMV DK   +    R    +   
Sbjct: 1014 VENGYNYAGKETLTSGITGQPLECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPT 1073

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1074 EGRSRDGGLRLGEM--ERDCLIGY 1095


>gi|324502244|gb|ADY40989.1| DNA-directed RNA polymerase III subunit RPC2 [Ascaris suum]
          Length = 1135

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 253/986 (25%), Positives = 401/986 (40%), Gaps = 180/986 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           HIASFD+ ++E +       +    D+ P     Y K L + +       P    G   +
Sbjct: 34  HIASFDYFINEDIKNILRANERITSDVNP---SFYVKYLDIRV-----GTPSSEEGFTQL 85

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
           +  K  P E R     YS P  V + ++   +        +GR+PIML+  +C L+++  
Sbjct: 86  N-EKISPHECRLRDMTYSAPIQVDIEYTRGNQRVLRNGIVIGRMPIMLRCSKCVLKDMNE 144

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
            +L    E P + GGYFI+ G EK+V L+      + I I RN+ K       +L   + 
Sbjct: 145 EELARVQECPYDPGGYFIIRGSEKVV-LIQEQLSKNRIMIGRNSKK-------ELQCEVL 196

Query: 245 SVKRDESATNNVLHFVTNGSARFMFSHR------------KSMC---------------- 276
           S   D  +      +V +   R+   H             K+M                 
Sbjct: 197 SSTSDRKSKT----YVISKKQRYYLKHNQLSDDIPIAIIFKAMGFESDYDIVSAVGLEEK 252

Query: 277 -LLGMMQSLHEEGIH---TQHDSKVFFGQIFKEKLQYDLRHL----------NEVEICDY 322
            +  M  S+ E   H   TQ  +  F     K      +R             E E  D+
Sbjct: 253 FVAAMAPSIEECAAHQIVTQESALQFIASKVK------MRKFGTGGSGPTPPKEHEAIDF 306

Query: 323 M--LTNCILPHLDDYWD-KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--- 376
           +  L  C +P  D     K + +  M  +L     G  + D  D    + +   GSL   
Sbjct: 307 LTSLMICHIPSHDGNMKLKAIYVGLMVRRLMQAEMGYTECDDRDFYGNKRLELAGSLMGL 366

Query: 377 -YLQLLKKEKSGTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNST 426
            +  + K+  S    +   S         DI    R   + +AM N +ATGN    +   
Sbjct: 367 LFEDVFKRFNSELKRIADNSLGKTLAAPLDIVKHMRQDLVTNAMVNAIATGNWIIKRFR- 425

Query: 427 LQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHT 484
              M+  G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  T
Sbjct: 426 ---MERHG---VTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDT 479

Query: 485 PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI---PEQALMVM 541
           P+G  CGL+ +L     I+     K + ++   L + G+  L  +  S+   PE  L V 
Sbjct: 480 PEGESCGLVKNLALISHITTDSDEKPVIRL---LYNSGVEDLQSLHFSLVHSPEYHL-VF 535

Query: 542 LDGRIVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           L+G IVG  +D Q   S +  +R   ++ E +  S                  +Y+ +  
Sbjct: 536 LNGAIVGITIDPQRIVSTIRAVRRNGLLSEFVSVSTN-----------AAQRSVYIASDG 584

Query: 601 GRMLRPVMNLAAG-------NIEWIGTFEQVFMDICIT----------MKEAYPGI---- 639
           GR+ RP + +  G       +I+ +    ++F D              M +A   +    
Sbjct: 585 GRLCRPYIIVTDGKPRITQHDIDELKKGHRIFEDFVDEGLIEYLDVNEMNDASIAVYENQ 644

Query: 640 ----TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
               TTH E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +
Sbjct: 645 IKADTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLM 704

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           Y L  P  P  +    +  + +  P G NAI+AV+SY+GYD+EDA++LNK+S +RG+   
Sbjct: 705 YLLVYPQRPLVKSKTIEMCNFEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRC 764

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGS----------MMQAQIFFGVVHYQRLRHMVS 805
            ++K      +   N      M   ++ +          + Q  I F     +  + M++
Sbjct: 765 LVYKHAKGTAKKYPNQTFDRLMGPTIEATTRKPIYKHQVLDQEGIVFAGARIRSKQVMIN 824

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
                        A  +   + G   + Y    ++ R P+ SY +      V   Y+  +
Sbjct: 825 KHMPIVSLEASAVAQSSGVVQAGNRNVEYKDVSISYRSPVPSYAER-----VLLTYNEDD 879

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              ++VV                     R  R P +GDKF+SR GQKG+C +    ED+P
Sbjct: 880 AHLIKVV--------------------LRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMP 919

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F D G+ PD++ NPHG+PSRMT+G L
Sbjct: 920 FNDLGMCPDMIMNPHGYPSRMTVGKL 945



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G+NY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 982  GFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGR 1041

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD + +Y
Sbjct: 1042 ARDGGLRLGEM--ERDCLIAY 1060


>gi|358339203|dbj|GAA47313.1| DNA-directed RNA polymerase III subunit RPC2 [Clonorchis sinensis]
          Length = 1141

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 244/944 (25%), Positives = 398/944 (42%), Gaps = 166/944 (17%)

Query: 112 ISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIM 171
           +  P V  G  G+  ++  P + R     Y+G   V V +    +        +GR+P+M
Sbjct: 66  VRSPTVNDG--GVVASRVTPHDCRLRDLTYAGEILVDVTFMRQNEIVSKRGVLIGRMPVM 123

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           LKS  C L   TP++L+   E P + GGYFI+GG EK++ +     +N  I  + +    
Sbjct: 124 LKSSVCILNGKTPSELMRLKECPLDPGGYFIIGGTEKVILMQEQMSKNRLIVEEDS---K 180

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR------------KSMCLLG 279
           RGL+ S       S  + +S TN ++        +F  +H             K+M +  
Sbjct: 181 RGLVCS----VTSSSAQTKSKTNIIMK-----DDKFFLAHNSFTVDVPVAILFKAMGITS 231

Query: 280 MMQSLH--------------------EEGIHTQHDSKVFFGQIFKEK-----------LQ 308
             + LH                    E  +HT+ D+  +     +++            +
Sbjct: 232 DQEILHYIGTEESIWANFVPSLKQCLESSVHTRLDACRWLQSRLQQRRFRPGLTSGKPTR 291

Query: 309 YDLRHLNEVEICDY--MLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
            D     E  + D    + + I+ H++    ++  + L L  M   L    +  +  D  
Sbjct: 292 PDCPVSEEDVVLDMQRFIRDIIITHVEMEKFNFAPRALFLGQMVRYLILANEHQIPPDDR 351

Query: 363 DSIMLQEIMTGGSLYLQL-------------LKKEKSGTSAVLKESDIYAAFRASSIESA 409
           D    + I   GSL   L             L   K  T       DI    +   I   
Sbjct: 352 DFYGNKRIELAGSLLALLFEDVFKTFNEDMWLTVSKIDTKRRCTPFDISRHIKTWMITEQ 411

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
           +   +++GN    +    ++M+      + + ++R+ Y++    + R  S F++ R  S 
Sbjct: 412 LNRAISSGNWIIKR---FRMMRHG----VTQIVSRLSYVAALGHMTRMTSTFEKTRKVSG 464

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
           PR +    WGF+CP  TP+G  CGL+ ++   C ++  +    L ++   L S  ++PL 
Sbjct: 465 PRSIHASQWGFVCPSDTPEGEACGLVKNVALMCHVTVEMDDTELIRL---LSSYYVMPLH 521

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
             +    E   ++ ++G+ +G+   +    L   +R L+  G         V++K+  + 
Sbjct: 522 QFLYGRTE--FIIYVNGKPIGFT--EQPGKLAALIRGLRRSGRI--DCFVSVHIKQAHRC 575

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLA--------------------------AGNIEWIGTF 621
                 +++ +  GR+ RP + +A                           G IE++   
Sbjct: 576 ------VHVVSDGGRLCRPYIVVANNRPLVTQAMLEDLVHNVLSWDDFLKKGVIEYLDAN 629

Query: 622 EQVFMDICITMKEAY---PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           E    D  + M E+Y       TH E+     L  +A LIP PD NQSPRN YQC MGKQ
Sbjct: 630 E--LNDCLVAMDESYLSDGNKYTHMEIDPATILGVVAGLIPYPDHNQSPRNTYQCAMGKQ 687

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
            +GT  LN + +     Y++  P  P  +      +  D  P G NAIVA++SY+GYD+E
Sbjct: 688 AIGTVALNQQIRFDTLQYQMVYPQKPLVQSKTIQMMHFDELPAGQNAIVAIMSYSGYDVE 747

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD---------GSMMQAQ 789
           DA+I+N++S +RGFA  C+++   + L+   N      M   VD           ++QA 
Sbjct: 748 DALIVNRASLDRGFARACVYRRAGVHLKMHENAVYDRLMGPSVDRETGLPRRGDELLQAD 807

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK--ALEDKLGPDGLVYVGAKLNERDPMYS 847
               V      R ++ +K          P  K  A +D  G  GL + G          +
Sbjct: 808 GTAFVGARASDRQILVNKEM--------PVVKVNAAQDNAGQLGL-HGG----------T 848

Query: 848 YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFAS 907
           +   +E R     Y G E   VE V  S+  +EG         +  R  R P VGDKF+S
Sbjct: 849 HESMTEFRRCPADYKGIEPSYVEKVMFST--SEGNQAV---VKVLLRQTRRPEVGDKFSS 903

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG+  +    ED+PF+  GLVPD++ NPHGFPSRMT+G L
Sbjct: 904 RHGQKGVVGLIVRQEDMPFSMHGLVPDVIMNPHGFPSRMTVGKL 947



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +E G++Y G E +YSGV G+ ++A I+FG V+YQRL+HMV DK   +
Sbjct: 981  IEHGHHYLGKEVLYSGVTGAPLEAYIYFGPVYYQRLKHMVMDKVHAR 1027


>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
           L.S.2.15]
 gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
          Length = 1131

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 253/966 (26%), Positives = 412/966 (42%), Gaps = 158/966 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +   L   +++   I  EI G  LK+ + K  I +P+V     G    +  P
Sbjct: 30  HLDSYNDFVRNKLQEIIDEQGEIPTEIPG--LKVRLGKIRIGKPRVRESDRG--EREISP 85

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +          +G +PIMLKS    +   T  +LIE G
Sbjct: 86  MEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIG 145

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           E P + GGYFIV G E+++         R+L++  +        N      ++ S  G  
Sbjct: 146 EDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGS-----NITHTAKIISSTAGYR 200

Query: 243 IR-SVKRDESATNNV--------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------ 287
           +  +++R +  T +V        + FV    A  + + R  +  + +   +  E      
Sbjct: 201 VPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEIQNELFPSLE 260

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFL 340
               I    D+  F G     ++    +  N +E    ++    LPHL    DD   K  
Sbjct: 261 QASSIANVDDALDFIGS----RVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAY 316

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL----------------QLLKKE 384
            L++   K+  +  G  + D +D    + +   G L+                 QL K +
Sbjct: 317 YLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSK 376

Query: 385 KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
             G    LK     A  R   +   + + LATGN   G+    QL+  + ++ M      
Sbjct: 377 VRGRKLALK-----ALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSM------ 425

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    QI+ 
Sbjct: 426 ---LSHLRRVI-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAV 481

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIA 555
            I  +++ +    L  +G++P+  VI+ + E         +   V+L+GR+VGY  D   
Sbjct: 482 GINERIVEK---TLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRD--G 536

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN- 614
             L  K+R  +  GE I   + + ++            +++    GR+ RP++ ++ GN 
Sbjct: 537 EELAKKIRERRRNGE-ISDEVNVGHIV-----TDFINEVHVNCDSGRVRRPLIIVSNGNP 590

Query: 615 ------IEWIGTFEQVFMDICITMK----------EAYPGIT--------THRELSKTDF 650
                 IE + +    F D+    K           AY  +         TH E+     
Sbjct: 591 LVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSPAI 650

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A++IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +   
Sbjct: 651 LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRA 710

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            D +   N P G NAI+AVIS+TGY+MED++I+N+SS ERG     +++S F  L     
Sbjct: 711 LDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERG-----MYRSTFFRL----- 760

Query: 771 YYGTETMYSG--VDGSMMQ---AQIFFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKAL 823
           Y   E  Y G   D  +M     + + G  +Y+ L    +VS + + K           L
Sbjct: 761 YSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVK-------GGDVL 813

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             K+ P   +    +  E  P  +    S    +  R+    EM +  + + +   EG  
Sbjct: 814 IGKVSPPRFL---QEFKELSPEQAKRDTS----IVTRHG---EMGIVDLVLITETAEGNK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +      +  R  R P++GDKFASR GQKG+  +  P  D+P+T  G+VPDI+ NPH  P
Sbjct: 864 LVK----VRVRDLRVPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALP 919

Query: 944 SRMTIG 949
           SRMT+G
Sbjct: 920 SRMTLG 925



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY    TE  Y G  G  ++++I+FGVV+YQ+L HMV+DK   +
Sbjct: 961  LKYGYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHMVADKIHAR 1007


>gi|300123537|emb|CBK24809.2| unnamed protein product [Blastocystis hominis]
          Length = 1056

 Score =  246 bits (628), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 254/935 (27%), Positives = 403/935 (43%), Gaps = 158/935 (16%)

Query: 109 KAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRV 168
           K  + EP V      I+ NK  P E R+    YS P    + ++   K      + +G++
Sbjct: 21  KIEVGEPMVLEDSSIIN-NKITPMECRKRSLTYSAPIFADIIYTLGDKIIRKKVR-IGQI 78

Query: 169 PIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRN 219
           PIML S +C LRN +PA+L    E   + GGYFIV G+EK++         R+L +   +
Sbjct: 79  PIMLHSCKCVLRNKSPAELAAMQECLYDPGGYFIVKGNEKVLLSGEQMSKNRVLCDINDD 138

Query: 220 HPIAIKRNA-----------WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM 268
             I +   +            + +G L+    V+ + +          + F   G    +
Sbjct: 139 GTIVVNVTSSTAERKSRCYVLEKKGKLYLKHNVFTKDIP-------ICIAFRCMG----I 187

Query: 269 FSHRKSMCLLG-----------MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEV 317
            S ++ M L+G            ++  HE GI TQ  +  + G +   +     R  +  
Sbjct: 188 ESDQEIMALIGNEPKYRTYFNQSIEEAHELGIFTQQQALKWVGSLVSMRKGRWSRKRSAE 247

Query: 318 EICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
           E    +    IL H+     D+W K + L++MT +    +     L  +D    + I T 
Sbjct: 248 EEGREVFNTTILCHVPVVRYDFWPKCVYLAYMTRECLQCIFDHSLLSDKDYYGNKRIETA 307

Query: 374 GSLYLQLLK--------KEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNS 425
           G L   L +        K K   +  L+++    AF    +     + +  G V+A K+ 
Sbjct: 308 GDLMSLLFEDLFKMYNAKVKEFVNKSLQKTTRVNAFDVVPVMQQFHDIITNGCVNAIKSG 367

Query: 426 TLQLMQASGFVI----MAENINRMRYMS---HFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
              L +   F I    +AE + R+ Y++   H   + R    +  + S PR L+   +G 
Sbjct: 368 NWVLKR---FHIDRKGVAEPVTRLSYIAAIGHMTRI-RSHVEKAQKISGPRALQPSQFGM 423

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP--LTPVIQSIPEQ 536
           +CP  TP+G  CGL+  LT    I+     K L Q   V   LG+L   L    +     
Sbjct: 424 VCPSDTPEGEQCGLVKSLTILAYITIDQDEKALRQ---VAYDLGVLDVGLFGAEELYARP 480

Query: 537 ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYL 596
           A +V L+G ++G  +     +LV  +R L+  G  +  +   VY  R  +       ++L
Sbjct: 481 ASLVFLNGGLLG--VHSQPQALVRGVRQLRRRG--LLGAFVSVYYDRIRRC------VHL 530

Query: 597 FTGPGRMLRPVMNL----------------------------AAGNIEWIGTFEQVFMDI 628
               GR+ RP++ L                             AG IE+I   E+    I
Sbjct: 531 SCDGGRICRPLLVLNRETGRPFLTKAHTDGIRRGTITIQELVRAGVIEYIDVNEENSCLI 590

Query: 629 CITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
            +T K+  P   TH E+     L  +A+LIP PD NQSPRN YQC MGKQ +GT   N +
Sbjct: 591 AVTDKDITPA-HTHMEIDPVSILGIVASLIPYPDHNQSPRNTYQCAMGKQAIGTVACNQQ 649

Query: 689 YQ-GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
            +  V  L  +  P  P  R    D L     P G NA+VAV+SY+GYD+EDA++LN++S
Sbjct: 650 QRVDVSPLNVMVYPMMPMVRSRVLDLLHFSQLPAGQNAMVAVMSYSGYDIEDAVVLNRAS 709

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            +RG+    I K     L+   N            GS   + +  G    +  +++    
Sbjct: 710 IDRGYGRVVISKKQVFSLKKYPN------------GS---SDLIKGPPRREDQKNIDDHT 754

Query: 808 WQTKDYFGRDPANKALE--DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRY---- 861
           W           N+  E    LG DG+V  G  ++  D M        N++V        
Sbjct: 755 W-----------NRLFEPYKALGSDGIVESGVPIHPGDIMV-------NKHVPMDTGSFG 796

Query: 862 SGKEEMCVEVVRM--SSGFTEGG--SVTPNCAYI---GYRIQRNPTVGDKFASRAGQKGI 914
           + ++++    V+   S G+ +    + T N  ++     R  R P +GDKF+SR GQKG+
Sbjct: 797 ADRDQLRAAPVKYKESGGYVDKVLITTTDNEYFVIKTMVRDMRRPELGDKFSSRHGQKGV 856

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             +    E+LPF+ +G+ PD++ NPHGFPSRMT+G
Sbjct: 857 VGLITGQENLPFSTAGIYPDMIMNPHGFPSRMTVG 891



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 8/65 (12%)

Query: 749 ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           ER F  G IF    IE      +  G+NY G +  YSG+ G  ++A IF G V+YQRL+H
Sbjct: 907 ERKF--GTIFGGTDIEDCAEELIRHGFNYSGKDLFYSGITGEPLRAYIFTGPVYYQRLKH 964

Query: 803 MVSDK 807
           MV DK
Sbjct: 965 MVKDK 969


>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
           M.14.25]
 gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
           M.16.27]
 gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
           M.16.4]
 gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
 gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
 gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
 gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
 gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
          Length = 1131

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 252/966 (26%), Positives = 412/966 (42%), Gaps = 158/966 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +   L   +++   I  EI G  LK+ + K  I +P+V     G    +  P
Sbjct: 30  HLDSYNDFVRNKLQEIIDEQGEIPTEIPG--LKVRLGKIRIGKPRVRESDRG--EREISP 85

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +          +G +PIMLKS    +   T  +LIE G
Sbjct: 86  MEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIG 145

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           E P + GGYFIV G E+++         R+L++  +        N      ++ S  G  
Sbjct: 146 EDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGS-----NITHTAKIISSTAGYR 200

Query: 243 IR-SVKRDESATNNV--------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------ 287
           +  +++R +  T +V        + FV    A  + + R  +  + +   +  E      
Sbjct: 201 VPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEIQNELFPSLE 260

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFL 340
               I    D+  F G     ++    +  N +E    ++    LPHL    DD   K  
Sbjct: 261 QASSIANVDDALDFIGS----RVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAY 316

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL----------------QLLKKE 384
            L++   K+  +  G  + D +D    + +   G L+                 QL K +
Sbjct: 317 YLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSK 376

Query: 385 KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
             G    LK     A  R   +   + + LATGN   G+    QL+  + ++ M      
Sbjct: 377 VRGRKLALK-----ALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSM------ 425

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    QI+ 
Sbjct: 426 ---LSHLRRVI-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAV 481

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIA 555
            I  +++ +    L  +G++P+  VI+ + E         +   V+L+GR+VGY  D   
Sbjct: 482 GINERIVEK---TLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRD--G 536

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN- 614
             L  K+R  +  GE I   + + ++            +++    GR+ RP++ ++ GN 
Sbjct: 537 EELAKKIRERRRNGE-ISDEVNVGHIV-----TDFINEVHVNCDSGRVRRPLIIVSNGNP 590

Query: 615 ------IEWIGTFEQVFMDICITMK----------EAYPGIT--------THRELSKTDF 650
                 IE + +    F D+    K           AY  +         TH E+     
Sbjct: 591 LVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSPAI 650

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A++IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +   
Sbjct: 651 LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRA 710

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            D +   N P G NAI+AVIS+TGY+MED++I+N+SS ERG     +++S F  L     
Sbjct: 711 LDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERG-----MYRSTFFRL----- 760

Query: 771 YYGTETMYSG--VDGSMMQ---AQIFFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKAL 823
           Y   E  Y G   D  +M     + + G  +Y+ L    +VS + + K           L
Sbjct: 761 YSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVK-------GGDVL 813

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             K+ P   +    +  E  P  +    S    +  R+    EM +  + + +   EG  
Sbjct: 814 IGKVSPPRFL---QEFKELSPEQAKRDTS----IVTRHG---EMGIVDLVLITETAEGNK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +      +  R  R P++GDKFASR GQKG+  +  P  D+P+T  G+VPD++ NPH  P
Sbjct: 864 LVK----VRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALP 919

Query: 944 SRMTIG 949
           SRMT+G
Sbjct: 920 SRMTLG 925



 Score = 48.1 bits (113), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY    TE  Y G  G  ++++I+FGVV+YQ+L HMV+DK   +
Sbjct: 961  LKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHAR 1007


>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
           tropicalis MYA-3404]
 gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
           tropicalis MYA-3404]
          Length = 1159

 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 251/998 (25%), Positives = 426/998 (42%), Gaps = 154/998 (15%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ S+++ +D  L       +L + D+ P 
Sbjct: 30  KKLTDE-INTAEDKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELVLSDVDP- 87

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K L + +   + ++P       G+      P E R     YS P  V V ++  
Sbjct: 88  --EFYVKYLDIRVGHKSTAKP-------GVKEVILPPHECRLRDLTYSAPIYVDVEYTRG 138

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---- 210
            K       E+GR+P+ML+S +C L  ++ A + +  E P + GGYF+V G EK++    
Sbjct: 139 RKIIRHNDLEIGRMPVMLRSNKCMLEGMSEASMAQVEECPLDPGGYFVVNGTEKVILVQE 198

Query: 211 -----RLLI-----------------NNRRNHPIAIKRN--AWKNRGLLFSDLGVYIRSV 246
                R+++                 + R++    I +N   +     +  D+ + I   
Sbjct: 199 QLSKNRIIVEADEKKAIVQASVTSSTHERKSKTYVITKNDKIYLKHNSVSEDIPIVIILK 258

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
               ++   +L  V      +     + + ++   ++   E + TQ  + ++ G+  K  
Sbjct: 259 AAGITSDLEILQLVCGTDPNY-----QDLFVVNFEEAAKLE-VFTQQQALLYVGKRVKTI 312

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
            +     L++++     +   I+ HL      + +K L ++ M  ++   +     +D  
Sbjct: 313 RRAGAPKLSQLQEGIEAIATTIVAHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDR 372

Query: 363 DSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
           D +  + +   G L    +  L KK  S   A + +  +    R S  ++ ++  + + N
Sbjct: 373 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKV-LKKPSRTSEFDALLSINIHSNN 431

Query: 419 VSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
           ++ G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S 
Sbjct: 432 ITMGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSG 488

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGML 524
           PR L+   +G +C   TP+G  CGL+ +L     I+   E  P K L       ++LG  
Sbjct: 489 PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLC------IALGCE 542

Query: 525 PLTPVIQSI--PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLK 582
           P+  +  +    E    V L+G ++G    +     V   R L+  G K+   + I    
Sbjct: 543 PIYALDSATLHSEGNFGVYLNGTLIGTT--RFPQKFVNDFRHLRRNG-KVSAFISIYTNT 599

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------------NIEWIGTFEQVFM--- 626
                   +  +++ T  GR+ RP++ +  G             N EW  +F+       
Sbjct: 600 H-------HQAVHIATDGGRICRPLIIVENGESKVTAEHLAKLLNQEW--SFDDFLKHGL 650

Query: 627 ----------DICITMKEA-----YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMY 671
                     D  I + E           TH E+     L  +A LIP P  NQSPRN Y
Sbjct: 651 VEYLDVNEENDSLIALYEEDINANSSTTVTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTY 710

Query: 672 QCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
           QC MGKQ +G    N   +    LY +  P  P  +    + +D D  P G NA VAV+S
Sbjct: 711 QCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIDYDKLPAGQNATVAVMS 770

Query: 732 YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
           Y+GYD+EDA++LNKSS +RGF    + +   ++L+   N+  T+ + SG+        IF
Sbjct: 771 YSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNH--TQDILSGMRVDENNNPIF 828

Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE 851
                +Q L      +  ++ + G+  ANK +    G   L   G + ++R       + 
Sbjct: 829 ----PHQALGPDGLGEVGSRIHNGQVFANKCVPTNSGESAL--GGPQQDDR-------QM 875

Query: 852 SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
             +R     Y G E   ++ V MS    +   +      +  R  R P +GDKF+SR GQ
Sbjct: 876 DRHREAPAFYKGPEPSYIDQVMMSVSDNDQALIK-----VLLRQTRRPELGDKFSSRHGQ 930

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           KG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 931 KGVCGIIVQQEDMPFNDYGISPDIIMNPHGFPSRMTVG 968



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E G++Y G + + SG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1002 ILVEKGFSYSGKDMLQSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1061

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1062 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1104

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1105 DVCNKCGLMGY 1115


>gi|375083053|ref|ZP_09730091.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
           5473]
 gi|374742289|gb|EHR78689.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
           5473]
          Length = 1118

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 242/959 (25%), Positives = 406/959 (42%), Gaps = 145/959 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +D G+   V +   ++ +I    +K   ++    E +   G         YP
Sbjct: 31  HLDSYNAFIDHGMQEVVNEFGGVKPDIPDFEVKFGRIRLGEPEFQEAHG----QRKPLYP 86

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +P+MLKSK C L  L+  +LI  G
Sbjct: 87  MDARIRNLTYSAPIFLEMIPVVKGIEQEPVEVRIGELPVMLKSKICRLYGLSDEELIAHG 146

Query: 192 EHPDEWGGYFIVGGHEKLV---RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
           E P + GGYFI+ G E+++     L  NR    I  ++N +  +   +      + +V+R
Sbjct: 147 EDPKDPGGYFIINGSERVIVSIEDLAPNRTLVEIDERQNRYIAKCFSYRHGYRALITVER 206

Query: 249 DESA--------TNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHE---------EGIHT 291
            +             V+ FV    A  + S ++ +  +     + +           I T
Sbjct: 207 RKDGLLYVSIPNVPGVIKFVYVMRALGLESDKEIVDAVSNNPEIQQVLFDNLEDASDIQT 266

Query: 292 QHDSKVFFGQ--IFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
           Q ++  + G+  +  +  +Y LR    +      + N +LPH+    +D   K   L  M
Sbjct: 267 QEEALDYIGKKAMPGQPKEYRLRRAQSI------IDNNLLPHMGVSPEDRIRKAYYLGMM 320

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK---------EKSGT 388
             K+  +  G+   D +D    + +   G L        + QL+K          ++ G 
Sbjct: 321 ALKVIELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFGQLVKDMQYQLTKTYQRKGE 380

Query: 389 SAVLKESDIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
               ++   +   + R   +   + + LATG    G+    QL+  + F         M 
Sbjct: 381 KYTFQDIQRFVRNSVRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNF---------MS 431

Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
            +SH R V      +E    E R L    WG ICP  TP+G  CGL+ +L    QI+  I
Sbjct: 432 TLSHLRRVT-SPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTAI 490

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPE-QALMVMLDGRIVGYILDQIATSLVPKLRML 565
           P +   ++   L SLG++ +    +  PE +   + L+G ++G   D I  SLV K++  
Sbjct: 491 PEE---EVLEYLESLGIVHIE---EKRPEPEDWRIYLNGVLIGTYKDGI--SLVNKIKSD 542

Query: 566 KIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VMNL 610
           +  G +I   + + Y +   +       +Y+ +  GR+ RP               V  +
Sbjct: 543 RRAG-RISDVINVAYYEDVRE-------VYINSDDGRVRRPLIIVEDGIPKLTREHVEAI 594

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITT----------HRELSKTDFLSNLANLIPM 660
             G ++W        ++     +E    + T          H E+     L   A+L+P 
Sbjct: 595 KKGTLKWSDLVRMGVIEYLDAEEEENAYVATWPWEVTKEHTHLEIMPAAILGLPASLVPY 654

Query: 661 PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP 720
           P+ N +PRN Y   M KQ++G    N+R +   + + +  P  P       + +  +  P
Sbjct: 655 PEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQIPLVNSRIMEAVGFEQRP 714

Query: 721 MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG 780
            G N +VAV+SY GY+MEDA+I+NK+S ERG A    F++   E +    Y G +T    
Sbjct: 715 AGQNFVVAVLSYGGYNMEDAVIMNKASIERGLARSTFFRTYEAEEK---KYMGGQTDKFE 771

Query: 781 VDGSMMQAQIFFGVVHYQRLRHMVSD-------KWQTKDYF-GRDPANKALEDKLGPDGL 832
           +    ++   F G  +Y   RH+  D       K + KD    R    + LE++ G    
Sbjct: 772 IPDPTVRG--FLGEKYY---RHLDEDGIIFPESKVEGKDVLVARTSPPRFLEEQAGLGAG 826

Query: 833 VYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
           +  G +                  +T R  G++ +  +V+      TE G  T     + 
Sbjct: 827 ILQGRR---------------ETSITMR-PGEKGIVDKVI-----LTETGDGT-KLVKVT 864

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P  GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT+G L
Sbjct: 865 VRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQL 923



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 960  GFRHNGREVMYDGITGRKLEADIFVGVIYYQRLHHMVADKLHAR 1003


>gi|302307227|ref|NP_983821.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|299788898|gb|AAS51645.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|374107033|gb|AEY95941.1| FADL275Cp [Ashbya gossypii FDAG1]
          Length = 1141

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 255/975 (26%), Positives = 417/975 (42%), Gaps = 180/975 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L       ++ + D+ P   E Y K + + + + + S  K+   P   
Sbjct: 57  HLDSFNYFVDVDLKKIIKANEMVLSDVDP---EFYLKYVDIRVGRRSNSS-KIDMTP--- 109

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++           E+G++PIML+S +C L   + 
Sbjct: 110 ------PHECRLRDMTYSAPIFVDIEYTRGRSIVLHKDVEIGKMPIMLRSNKCILNGASE 163

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
             + +  E P + GGYFIV G EK++ +     +N  I     A + + ++ + +    +
Sbjct: 164 EVMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKAIVQASVTSSTH 220

Query: 243 IRSVKRDESATNNVLHFVTNGSARF-----------MFSHRKSMCLLGMMQSLHEE---- 287
            R  K      N+ ++   N  A             + S  + M L+    S +++    
Sbjct: 221 ERKSKTYVVTKNDKIYLKHNSIAEEVPIVIVLKACGIVSDLEIMQLVCGNDSSYQDIFAI 280

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                    I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     D
Sbjct: 281 NFEEASKMNIYTQQQALEYIGTKVKTIRRQKLTVLQEGIE----AIATTVIAHLTVEALD 336

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
           + +K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K+
Sbjct: 337 FREKALYVAMMTRRVIMAIHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKA 396

Query: 387 GTSAVLKE---SDIYAAF-----RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
               VLK+   +++Y A       +++I S +   ++TGN S  +      M+ +G   +
Sbjct: 397 SIDKVLKKPNRAEMYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 449

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L
Sbjct: 450 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNL 509

Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                I+   E  P K L  +      LG+  +T +  +       V L+G I+G    +
Sbjct: 510 ALMTHITTDDEEEPIKNLCYL------LGVEDITLLDSASIHLNYGVYLNGTIIGTT--R 561

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN---- 609
                V + R+L+  G K+ + + I Y    +K       +++ T  GR+ RP++     
Sbjct: 562 FPARFVNQFRLLRRTG-KVSEFISI-YTNSHQK------AVHIATDGGRICRPLIIVRNG 613

Query: 610 ----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                 L  G +E++   E+    I +  K+   G TTH E+  
Sbjct: 614 KSMVTAGHLRRLLEGELQFDDFLKLGLVEYLDVNEENDSYIALYEKDIEEG-TTHLEIEP 672

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 673 FTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVK 732

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA+++NKSS +RGF      K     L+ 
Sbjct: 733 SKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVINKSSIDRGFGRCETRKKTTTILKR 792

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ +  G+                 R+       WQ +               L
Sbjct: 793 YPNH--TQDIIGGM-----------------RVDENGEPIWQHQ--------------SL 819

Query: 828 GPDGLVYVGAKL-------------NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM 874
           GPDGL  VG K+             N  D + +   +S+ R     Y   E   ++ V M
Sbjct: 820 GPDGLGEVGMKVTSGQIYINKSIPTNASDSVLNQV-QSQYREAPIIYRAPEPSHIDQVMM 878

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
           S    +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+ PD
Sbjct: 879 SVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFNDQGICPD 933

Query: 935 IVFNPHGFPSRMTIG 949
           I+ NPHGFPSRMT+G
Sbjct: 934 IIMNPHGFPSRMTVG 948



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I + +G+NY G + +YSG+ G  +QA +FFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 982  ILVNNGFNYSGKDMLYSGITGECLQAYVFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1041

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1042 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFE-V 1084

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1085 DVCNKCGLMGY 1095


>gi|321471157|gb|EFX82130.1| hypothetical protein DAPPUDRAFT_316708 [Daphnia pulex]
          Length = 1135

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 235/915 (25%), Positives = 387/915 (42%), Gaps = 161/915 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L  + PA++ ++
Sbjct: 98  PHECRLRDMTYSAPVTVDIEYTRGQQRVVRNGIAIGRMPIMLRSSNCTLAGILPAEMAKK 157

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIK----RNAWKNRGLLFS 237
            E P + GGYFIV G+EK++         R+++   R   ++ +     +  K R  +  
Sbjct: 158 NECPYDCGGYFIVRGNEKVILIQEQMSKNRMIVEQDRKGNMSCQVTSSTHGTKTRTNVIM 217

Query: 238 DLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG--------MMQSLHE--- 286
           + G Y       +     V+ F   G    + S ++ + ++G           SL E   
Sbjct: 218 NKGKYYLKQNSFQDDIPVVIAFKAMG----IVSDQEIVQMIGTDDHVMTSFAPSLEECVR 273

Query: 287 EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCL 342
             I TQ  +    G+  ++K  +       ++     L   +L H+     ++  K + L
Sbjct: 274 ASIFTQQQALNHLGKKLRQKRFFGGPKKTPLDEAREALAETVLAHVPVLNFNFKAKAMYL 333

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           + M  ++    +    +D  D    +     GSL    +  L K+         +K+   
Sbjct: 334 ALMIRRVIQAERDPTSVDDRDYYGNKRCELAGSLISLLFEDLFKRMNFELKSIADKNIPK 393

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    R  ++   + N +ATGN +  +      M+  G   M   + R+ Y+S
Sbjct: 394 VKAAQFDVIKHIRTDTLTLGLENAIATGNWTIKRFR----MERQGVTQM---LCRLSYIS 446

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+    
Sbjct: 447 GLGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEAE 506

Query: 508 SKVLAQIPSVLVSLGMLPLTPVI-QSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRML 565
            + + +I     ++G+  +     + I + ++  V L+G I+G + D         LR++
Sbjct: 507 EEPIIKIAQ---NMGVEDINLFSGEEISDPSIYTVFLNGNILGLVKDY--------LRLI 555

Query: 566 KIVGEKIPKSLEIVYLKRPEKGMGLYP-----GLYLFTGPGRMLRPVMNLAAGN------ 614
           +    K+ +    +        + +YP      +Y+    GR+ RP + +  G       
Sbjct: 556 RYF--KLARRHGFI-----NAFVSIYPHFLTRSVYISCDSGRLCRPYIIVRQGRPAVTEH 608

Query: 615 --------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNL 654
                               +E++   E+   +I +   +     TTH E+     L   
Sbjct: 609 HMQELADSFRTFEDFIHDGLVEYLDVNEENDSNIAVYESDINEE-TTHLEIEPFTLLGVC 667

Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
           A LIP P  NQSPRN YQC MGKQ MGT   N R +  G LY L  P  P  +    + +
Sbjct: 668 AGLIPYPHHNQSPRNTYQCAMGKQAMGTIACNQRNRIDGLLYNLVYPHKPMVKTRTIEMV 727

Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
           + +N P G NA+VAV+SY+G+D+EDA +LNK+S +RG+    ++K+    L+  YN   +
Sbjct: 728 NFENIPAGQNAMVAVMSYSGFDIEDATVLNKASLDRGYGRCIVYKNAKCVLKR-YNNATS 786

Query: 775 ETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVY 834
           +     V+G M+                         D   + PA K   + +  DG   
Sbjct: 787 DR----VNGPMI-------------------------DPVTKKPAWK--HEIIDIDGFAC 815

Query: 835 VGAKLNERDPMYSYWKES------------------ENRYVTCRYSGKEEMCVEVVRMSS 876
           VG  +  +  + +    +                  E R V   Y G     VE V  SS
Sbjct: 816 VGQPVQPKQVLINKIMPTVPAVAVTPGVPAAAAPLPEYRDVPITYKGPIPSYVEKVMFSS 875

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              E      N   I  R  R P +GDKF+SR GQKG+ ++    EDLPFT+ G+ PD++
Sbjct: 876 NAEEA-----NIIKIQLRQTRRPEIGDKFSSRHGQKGVTALVAEQEDLPFTELGICPDVI 930

Query: 937 FNPHGFPSRMTIGFL 951
            NPHGFPSRMT+G L
Sbjct: 931 MNPHGFPSRMTVGKL 945



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G+NY G E M SG  G  + A I+FG V+YQ+L+HMV DK   +    R    +   
Sbjct: 979  MKHGFNYQGKECMTSGTTGEQLTAYIYFGPVYYQKLKHMVMDKMHARSQGPRAILTRQPT 1038

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD + +Y
Sbjct: 1039 EGRARDGGLRLGEM--ERDCLIAY 1060


>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
 gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 1131

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 252/966 (26%), Positives = 410/966 (42%), Gaps = 158/966 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +   L   +++   I  EI G  LK+ + K  I +P+V     G    +  P
Sbjct: 30  HLDSYNDFVRNKLQEIIDEQGEIPTEIPG--LKVRLGKIRIGKPRVRESDRG--EREISP 85

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +          +G +PIMLKS    +   T  +LIE G
Sbjct: 86  MEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIG 145

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           E P + GGYFIV G E+++         R+L++  +        N      ++ S  G  
Sbjct: 146 EDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGS-----NITHTAKIISSTAGYR 200

Query: 243 IR-SVKRDESATNNV--------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------ 287
           +  +++R +  T +V        + FV    A  + + R  +  + +   +  E      
Sbjct: 201 VPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEIQNELFPSLE 260

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFL 340
               I    D+  F G     ++    +  N +E    ++    LPHL    DD   K  
Sbjct: 261 QASSIANVDDALDFIGS----RVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAY 316

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL----------------QLLKKE 384
            L++   K+  +  G  + D +D    + +   G L+                 QL K +
Sbjct: 317 YLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSK 376

Query: 385 KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
             G    LK     A  R   +   + + LATGN   G+    QL+  + ++ M      
Sbjct: 377 VRGRKLALK-----ALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSM------ 425

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    QI+ 
Sbjct: 426 ---LSHLRRVI-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAV 481

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIA 555
            I  +++ +    L  +G++P+  VI+ + E         +   V+L+GR+VGY  D   
Sbjct: 482 GINERIVEK---TLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRD--G 536

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN- 614
             L  K+R  +  GE I   + + ++            +++    GR+ RP++ ++ GN 
Sbjct: 537 EELAKKIRERRRNGE-ISDEVNVGHIV-----TDFINEVHVNCDSGRVRRPLIIVSNGNP 590

Query: 615 ------IEWIGTFEQVFMDICITMKEAYPGIT------------------THRELSKTDF 650
                 IE + +    F D+    K  Y                      TH E+     
Sbjct: 591 LVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENGYVALEPSDLTPEHTHLEIWSPAI 650

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A++IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +   
Sbjct: 651 LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRA 710

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            D +   N P G NAI+AVIS+TGY+MED++I+N+SS ERG     +++S F  L     
Sbjct: 711 LDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERG-----MYRSTFFRL----- 760

Query: 771 YYGTETMYSG--VDGSMMQ---AQIFFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKAL 823
           Y   E  Y G   D  +M     + + G  +Y+ L    +VS + + K           L
Sbjct: 761 YSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVK-------GGDVL 813

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             K+ P   +    +  E  P  +    S    +  R+    EM +  + + +   EG  
Sbjct: 814 IGKVSPPRFL---QEFKELSPEQAKRDTS----IVTRHG---EMGIVDLVLITETAEGNK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +      +  R  R P++GDKFASR GQKG+  +  P  D+P+T  G+VPDI+ NPH  P
Sbjct: 864 LVK----VRVRDLRVPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALP 919

Query: 944 SRMTIG 949
           SRMT+G
Sbjct: 920 SRMTLG 925



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY    TE  Y G  G  ++++I+FGVV+YQ+L HMV+DK   +
Sbjct: 961  LKYGYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHMVADKIHAR 1007


>gi|325182727|emb|CCA17182.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B
           isoform 2 putative [Albugo laibachii Nc14]
          Length = 1177

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 245/928 (26%), Positives = 391/928 (42%), Gaps = 166/928 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P + R     Y+ P  V+V +    K        +GR+PIML+S  C L      QL   
Sbjct: 112 PHQCRLRDRTYAAPVYVSVKYRRGPKIVTNNKVLIGRIPIMLRSANCVLTGKNHTQLAAL 171

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+V             I     KNR +L  D    +   I S 
Sbjct: 172 KECPYDPGGYFIVKGVEKVV------------LIHEQLSKNRVILELDPKQNICASITSS 219

Query: 247 KRDESATNNVLHFVTNGSARFMF-SHRKSMCLLGMMQSLHEEGIHTQHDSKVF------- 298
             +  +  N+  F+  G       S    + ++ +++     G+  +HD ++        
Sbjct: 220 THERKSRTNI--FLKGGRIYLKSNSFGSDIPIIAILR-----GMGMEHDQEIIDLIGSEP 272

Query: 299 ---------FGQIFKEKLQYDLRHL--------------------------NEVEICDYM 323
                    F Q+ + KL   L+ L                          N  E     
Sbjct: 273 NIMDALLASFEQVSELKLFTQLQALEYIGSKMTSQSRGKANSRNGGASQPTNIAETARAA 332

Query: 324 LTNCILPH----LDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQ 379
           L N +L H    +D +  K + ++H+  ++    +   +LD +D    + +   G L   
Sbjct: 333 LANLVLNHVPCEIDQFRLKCVYIAHIVRRIIFTDRDRTRLDDKDYYGNKRLELAGQLLSL 392

Query: 380 LLKKEKSGTSAVLKES--------------DIYAAFRASSIESAMTNFLATGNVSAGKNS 425
           L +      ++ LK                DI    R  +I     + LATGN +  +  
Sbjct: 393 LFEDLFKRFNSDLKRQADMILSKPNRASMFDIVKCIRTDTITQGFIHALATGNWTLKRFR 452

Query: 426 TLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVH 483
               M  +G   +   ++R+ YMS    + R  S F++ R  S PR L+   WG +CP  
Sbjct: 453 ----MDRAG---VTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPAD 505

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI-QSIPEQA-LMVM 541
           TP+G  CGL+ +L   C ++    S     I  +   LG+  +     +++  ++  ++M
Sbjct: 506 TPEGEACGLVKNLALLCHVTSDEESD---PIRRLCFDLGVTDVCLCSGEALNHRSNYLIM 562

Query: 542 LDGRIVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           L+G I+G   D ++  + + ++R   ++GE +  S+ I  ++R          +Y+ +  
Sbjct: 563 LNGIIIGTHGDPRMFVTKLRRIRRAGLIGEFV--SVMIHDVQRV---------VYIASDG 611

Query: 601 GRMLRPVMNL----------------------------AAGNIEWIGTFEQVFMDICITM 632
           GR+ RP++ +                              G +E++   E+   +  I +
Sbjct: 612 GRVCRPLLLIDPKTHRPKLSSRQMRELQAHVRTLHSLIVEGCVEYVDVNEE--NNCLIAL 669

Query: 633 KEAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            E    + TTH E+     L  ++ LIP P  NQSPRN YQC MGKQ +GT  +N   + 
Sbjct: 670 HEDDITVRTTHLEIDPVTILGVVSALIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERI 729

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
              LY L  P  P  +    D ++ D+ P G NAIVAV+SY+GYD+EDA++LNK+S +RG
Sbjct: 730 DTLLYTLVYPHMPMVKSRVLDLVNFDHVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRG 789

Query: 752 FAHGCIFKSMFIELESGYNYYGT----------ETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           F    +F+ +   ++   N  GT          E++ S   G    A      + ++  R
Sbjct: 790 FGRCTVFRKLQAMVKKYPN--GTFDRIVGPPDFESVLSTATGGTAAA------LGFRNAR 841

Query: 802 HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRY 861
           +   D        G       L +K  P     +G      DP+ S    S     TC Y
Sbjct: 842 YASLDADGIARVGGIVHHGAILINKEQPSNAHSMGDTSGSNDPLASI---SYGPSPTC-Y 897

Query: 862 SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
            G     V+ V ++S  T   S+      +  R  R P +GDKF+SR GQKG+C      
Sbjct: 898 KGAVPSIVDKVLITSSETYQTSLL---VKVLLRQTRRPEIGDKFSSRHGQKGVCGTICSQ 954

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           ED+PF D G+ PD++ NPHGFPSRMT+G
Sbjct: 955 EDMPFNDQGICPDLIMNPHGFPSRMTVG 982



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++G+NY G + + SG+ G  +   IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1023 VKAGFNYAGKDYLTSGITGEPLLCYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPT 1082

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1083 EGRSRDGGLRLGEM--ERDCLIGY 1104


>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
           Y.N.15.51]
 gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
 gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
          Length = 1131

 Score =  245 bits (626), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 252/966 (26%), Positives = 412/966 (42%), Gaps = 158/966 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +   L   +++   I  EI G  LK+ + K  I +P+V     G    +  P
Sbjct: 30  HLDSYNDFVRNKLQEIIDEQGEIPTEIPG--LKVRLGKIRIGKPRVRESDRG--EREISP 85

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +          +G +PIMLKS    +   T  +LIE G
Sbjct: 86  MEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIG 145

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           E P + GGYFIV G E+++         R+L++  +        N      ++ S  G  
Sbjct: 146 EDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGS-----NITHTAKIISSTAGYR 200

Query: 243 IR-SVKRDESATNNV--------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------ 287
           +  +++R +  T +V        + FV    A  + + R  +  + +   +  E      
Sbjct: 201 VPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEIQNELFPSLE 260

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFL 340
               I    D+  F G     ++    +  N +E    ++    LPHL    DD   K  
Sbjct: 261 QASSIANVDDALDFIGS----RVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAY 316

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL----------------QLLKKE 384
            L++   K+  +  G  + D +D    + +   G L+                 QL K +
Sbjct: 317 YLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSK 376

Query: 385 KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
             G    LK     A  R   +   + + LATGN   G+    QL+  + ++ M      
Sbjct: 377 VRGRKLALK-----ALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSM------ 425

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    QI+ 
Sbjct: 426 ---LSHLRRVI-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAV 481

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIA 555
            I  +++ +    L  +G++P+  VI+ + E         +   V+L+GR+VGY  D   
Sbjct: 482 GINERIVEK---TLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRD--G 536

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN- 614
             L  K+R  +  GE I   + + ++            +++    GR+ RP++ ++ GN 
Sbjct: 537 EELAKKIRERRRNGE-ISDEVNVGHIV-----TDFINEVHVNCDSGRVRRPLIIVSNGNP 590

Query: 615 ------IEWIGTFEQVFMDICITMK----------EAYPGIT--------THRELSKTDF 650
                 IE + +    F D+    K           AY  +         TH E+     
Sbjct: 591 LVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSPAI 650

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A++IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +   
Sbjct: 651 LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRA 710

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            D +   N P G NAI+AVIS+TGY+MED++I+N+SS ERG     +++S F  L     
Sbjct: 711 LDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERG-----MYRSTFFRL----- 760

Query: 771 YYGTETMYSG--VDGSMMQ---AQIFFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKAL 823
           Y   E  Y G   D  +M     + + G  +Y+ L    +VS + + K           L
Sbjct: 761 YSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVK-------GGDVL 813

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             K+ P   +    +  E  P  +    S    +  R+    EM +  + + +   EG  
Sbjct: 814 IGKVSPPRFL---QEFKELSPEQAKRDTS----IVTRHG---EMGIVDLVLITETAEGNK 863

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +      +  R  R P++GDKFASR GQKG+  +  P  D+P+T  G+VPD++ NPH  P
Sbjct: 864 LVK----VRVRDLRVPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALP 919

Query: 944 SRMTIG 949
           SRMT+G
Sbjct: 920 SRMTLG 925



 Score = 48.1 bits (113), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY    TE  Y G  G  ++++I+FGVV+YQ+L HMV+DK   +
Sbjct: 961  LKYGYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHMVADKIHAR 1007


>gi|341581876|ref|YP_004762368.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
 gi|340809534|gb|AEK72691.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
          Length = 1122

 Score =  245 bits (626), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 247/962 (25%), Positives = 415/962 (43%), Gaps = 149/962 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ G+   + +   ++ +I    +K   ++    E +   G         YP
Sbjct: 33  HLDSYNAFIESGMQRVIYEFGGLKPDIPDFEVKFGKIRLGEPEFQEAQG----QRKPLYP 88

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            +AR     YS P  + +     G         +G +PIMLKSK C L  L+  +LI+ G
Sbjct: 89  MDARIRNLTYSAPLYLELIPVIKGIEQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLG 148

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR--GLLFSDLGVYIRSVKRD 249
           E P + GGYFI+ G E+++ + I +   +   ++R+  +NR    +FS    Y R++   
Sbjct: 149 EDPKDPGGYFIINGSERVI-VSIEDLAPNKTLVERDERQNRIIAKVFSYRHGY-RALITV 206

Query: 250 ESATNNVLHFVTNGSAR---FMFSHRKSMCLLG---MMQSLHEE---------------G 288
           E   + +L+       R   F++  R ++ LL    +++++ ++                
Sbjct: 207 ERRKDGILYVNIPNVPRPVKFVYVMR-ALGLLSDKEIVEAVSDDPRIQQVLFDNLEDASD 265

Query: 289 IHTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCL 342
           +  Q D+  + G++    +  +Y LR        ++++ N +LPH+    +    K   L
Sbjct: 266 VMNQEDALDYIGKLSLPGQPKEYRLRR------AEHIIDNNLLPHMGVEPERRKAKAYYL 319

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKK-EKSGTSAVLK 393
             M  K+  +  G+   D +D    + +   G L        + QL+K  +   T    +
Sbjct: 320 GMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQR 379

Query: 394 ESDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           + + Y           + R   +   + + LATG    G+    QL+         +  N
Sbjct: 380 KGERYTFENIQRFVRNSIRPDVLSERIEHALATGAWPGGRTGVSQLL---------DRTN 430

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            M  +SH R V      ++    E R L    WG ICP  TP+G  CGL+ +L+   QI+
Sbjct: 431 YMSTLSHLRRVT-SPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLSLMSQIT 489

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKL 562
             IP +   ++   L  LG++ +    +  P   L  + L+G ++G I D    SLV ++
Sbjct: 490 TGIPEE---EVREYLNKLGVVSIE---ERRPSPELWRLYLNGVLIGTIED--GESLVRRI 541

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------------- 608
           R  +  G KI   + +   +  E        +Y+ +  GR+ RP++              
Sbjct: 542 RSDRRSG-KISDVINVAMYQDEE-----VREVYVNSDDGRVRRPLIIVENGKPKLTKEHV 595

Query: 609 -NLAAGNIEWIGTFEQVFMDICITMKEAYPGITT----------HRELSKTDFLSNLANL 657
             +  G + W    +   ++     +E    + T          H EL     L   A+L
Sbjct: 596 DAIKNGALTWNDLVKMGIIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASL 655

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           +P P+ N +PRN Y   M KQ++G    N+R +   + + +  P  P         +  +
Sbjct: 656 VPYPEHNAAPRNTYGAGMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFE 715

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G N +VAV+SY GY+MEDA+I+NK+S ERG      F++   E +    Y G +T 
Sbjct: 716 ERPAGQNFVVAVLSYGGYNMEDAIIMNKASIERGLGRSTFFRTYEAEEK---RYLGGQTD 772

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSD-------KWQTKDYF-GRDPANKALEDKLGP 829
              V    +Q   + G  +Y   RH+  D       K   KD   GR    + LE++ G 
Sbjct: 773 RFEVPDPTIQG--YLGEKYY---RHLDEDGIIFPESKVTGKDVLVGRTSPPRFLEEQSGL 827

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
            G++                +E     VT R S  E   V+ V +    TE G  T    
Sbjct: 828 GGIIL---------------QERRETSVTVRPS--ERGIVDKVII----TETGDGT-KLV 865

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +  R  R P  GDKFASR GQKG+  +  P ED+P+T+SG+VPD++ NPHG PSRMT+G
Sbjct: 866 KVTTRDLRIPEFGDKFASRHGQKGVVGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVG 925

Query: 950 FL 951
            L
Sbjct: 926 QL 927



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ + G E MY G+ G  ++A IF GV++YQRL HMV+DK   +
Sbjct: 964  GFKHSGREVMYDGITGRRLEADIFVGVIYYQRLHHMVADKMHAR 1007


>gi|352682853|ref|YP_004893377.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
 gi|350275652|emb|CCC82299.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
          Length = 1127

 Score =  245 bits (625), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 247/953 (25%), Positives = 404/953 (42%), Gaps = 135/953 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKV--PAGPVGIHFNKY 129
            I +F+  ++  L   VE++  +E EI G  LK+ I +  I  P++  P G   +     
Sbjct: 41  QIRAFNDFVERRLPKIVEEMGTVETEIKG--LKVVIERVEIGWPRIKEPDGSESL----I 94

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
           YP EAR   + YS P  +T+    D +   T T   G +PI++KSKRC+L  L P +  +
Sbjct: 95  YPMEARLRNATYSAPIYLTMTLYVDDEPYATETIYAGELPIVVKSKRCNLTRLKPEEYAK 154

Query: 190 RGEHPDEWGGYFIVGGHEKLV---RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           + E P++ GGYFI+ G E++V     L+ +R  + +  K        ++ +  G   R+ 
Sbjct: 155 KFEDPEDPGGYFIINGSERVVISQEDLVTDRPIYDVGDKPTVRYLAKVISTGPGY--RAT 212

Query: 247 KRDESATNNVLHFVTNG-SARFMFS-HRKSMCLLG-----------------MMQSL--H 285
              E   + V++   +    R  F+ + ++M L                   ++ SL   
Sbjct: 213 MTVEYHKDGVIYVTLSAIPVRIPFTVYMRAMGLESDQDIVLAVSDDPDIQKELLPSLLAG 272

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICD-YMLTNCILPHLDDYW------DK 338
           +E   T+ D+  F G          +R    ++I D Y L N      DD         K
Sbjct: 273 QEIATTRDDALDFIGGKIAVGQPRPIRIERALQILDKYFLPNLNPQKPDDKAMQEARIKK 332

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-----------YLQLLKKEKSG 387
            L L  +   L  +  G  + D +D +  + +     L           +LQ LK +   
Sbjct: 333 ALLLGQVAKGLIEMQLGRRRPDDKDHVANKRVRLVNDLLAQLFRTVMKQFLQELKNQLEK 392

Query: 388 TSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM-- 445
             A  K   +    R   I   +   LATGN   GK    Q++  + ++     + R+  
Sbjct: 393 YYARGKIPHLQTIVRPDIITERVKQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVS 452

Query: 446 ---RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
              R   HF A               R L    WG +C V TP+G   GL+ +L    ++
Sbjct: 453 SLSRTQPHFEA---------------RDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEV 497

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +  +     + +  +L +LG++P+    ++    A  V L+GR++G  +      LV  +
Sbjct: 498 TMGVDE---SSVEGLLYNLGVVPVLEARRNGVAGA-EVYLNGRLIG--VHPEPEELVKNI 551

Query: 563 RMLKIVGEKIPKSLEIVYLKRP-----EKGMGLYPGLYLFTGPGRMLRP-VMNLAAGNIE 616
           R ++  G K+   + +  L        + G    P L +  G  ++ R  V  L AG + 
Sbjct: 552 RTMRRQG-KVHDEVNVALLGNSIYVNCDGGRIRRPLLVVENGKLKLTREHVQKLVAGELT 610

Query: 617 W-----IGTFEQVFMD------ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
           W     +G  E +  D      I +  +E   G T H E+  +  L  +A++IP  + NQ
Sbjct: 611 WNDLIKMGVIEYLDADEEENAHIAVDPQEDLAGYT-HMEIIPSSILGAIASIIPYLEHNQ 669

Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
           SPRN Y+  M KQ++G P  N  Y+   + + L  P  P       + +     P G NA
Sbjct: 670 SPRNQYEAAMAKQSLGLPQANIMYKLDSRGHMLYYPERPIVTTRGLELIGYSRKPAGQNA 729

Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM 785
           +VA+++YTGY++EDA+I+NKSS ERGF     +++          Y   E  Y G +   
Sbjct: 730 VVALLTYTGYNIEDAIIMNKSSVERGFMRSNFYRT----------YETEEQKYPGGEEDR 779

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK--LNERD 843
           ++                V D    + Y G +      ED + P  +   G +  + +  
Sbjct: 780 IE----------------VPDP-SARGYRGPEAYGHLDEDGIAPPEVYVSGGEVIIGKTA 822

Query: 844 PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIGYRIQRN 898
           P   Y      + +  R     +  + V R   G  +   +T +        +  R  R 
Sbjct: 823 PPRFYMTLETEKILKER----RDASIPVRRGEKGIVDRVVITESPEGNKLVKVRLRELRV 878

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P +GDKFASR GQKG+  +    ED+PFT+ G+VPDI+ NPH  PSRMT+G L
Sbjct: 879 PELGDKFASRHGQKGVIGMLLRQEDMPFTEDGIVPDIIVNPHAMPSRMTVGQL 931



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY + G E MYSG+ G  + A IF G+V+YQ+L HMV+DK   +
Sbjct: 968  GYRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHAR 1011


>gi|389585547|dbj|GAB68277.1| DNA-directed RNA polymerase III subunit [Plasmodium cynomolgi strain
            B]
          Length = 1300

 Score =  245 bits (625), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 257/973 (26%), Positives = 420/973 (43%), Gaps = 194/973 (19%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P   RQ    YS P  V V +            E+GR+P+ML+S  C L N +  +L++ 
Sbjct: 182  PQICRQRDLTYSAPIYVDVEYVKGSNIIRKNNVEIGRLPVMLRSDICILHNKSEEELMKL 241

Query: 191  GEHPDEWGGYFIVGGHEKLVRL---LINNRRNHPIAIKRN------------------AW 229
            GE P + GGYFIV G E+++ +   L  NR    + IK N                   +
Sbjct: 242  GECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICATITSTTAESKSRCAIVY 301

Query: 230  KNRGL------LFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF----SHRKSMCLLG 279
            KN  L         D+GV I            +L  +   S + +F    SHR    L G
Sbjct: 302  KNNKLYLKHNSFIEDIGVCI------------ILRAMGYESDQEIFQMIGSHRNY--LNG 347

Query: 280  MMQSLHE---EGIHTQHDSKVFFGQIFKEKL--------QYDLRHLNEVEICDY---MLT 325
            ++ SL+E   E I T  D+ ++ G+  + +L          + +  NE +I +     L+
Sbjct: 348  ILLSLYELYSENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDIIEEGLDFLS 407

Query: 326  NCILPHLD-----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQL 380
              +L H+      D+ +K  C+  M  ++        +LD +D    + +   G L   L
Sbjct: 408  RVLLSHIQQKNKYDFRNKARCICLMIRRVLDSANNKNELDDKDYYGNKRLELAGQLISLL 467

Query: 381  -----------LKKE---------KSGTSAVLKES--------DIYAAFRASSIESAMTN 412
                       LKK+         +S  ++ LK S        D++ +     I   M  
Sbjct: 468  FEDLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYSGNINETYPDVFRSLPKDIITRGMQA 527

Query: 413  FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQ 470
             ++TGN +  +      M+ SG   +++ ++R+ +++    + R  S F++ R  S PR 
Sbjct: 528  AISTGNWNIKRFK----MEKSG---VSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRA 580

Query: 471  LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
            L+   WG +CP  TP+G  CGL+ +L     ++    ++    +  +L +LG+     + 
Sbjct: 581  LQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTN--DNENNEHLIEILYTLGVEDSDSLT 638

Query: 531  --QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGM 588
              +   E    V+ +G ++G  + +   + + ++R L+  G KI + + I          
Sbjct: 639  GEEMYKEGIFFVIFNGILLG--VHKKPRTFMRRIRCLRRYG-KIGQFVSIY-------DN 688

Query: 589  GLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEWIGTFE 622
             L+  +Y+ T  GR+ RP++ +  G                           IEWI   E
Sbjct: 689  FLHNAIYISTDGGRLCRPLIIVENGKSKLSQEHIVSLENGTINFFDLLKSSVIEWIDVNE 748

Query: 623  QVFMDICITMKEAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
            Q   ++ I + E+   + TTH E+     L  +A LIP P+ NQSPRN YQC MGKQ +G
Sbjct: 749  Q--NNLLIALNESDISVNTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIG 806

Query: 682  TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
                N   +    LY L  P  P  +    + ++ +  P G NAIVAV+S+ GYD+EDA+
Sbjct: 807  AIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAI 866

Query: 742  ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
            ++NKSS +RGF      +   +EL+  +N      + S +  S +Q +        Q  +
Sbjct: 867  VMNKSSIDRGFGRCMSLRKHAVELKKYFNGSNDLVLPSPLAISKLQQRQEKERQEKQERQ 926

Query: 802  HMVSDKWQTKDYF---------------------GRDPA---NKALED--KLGPDGLVYV 835
                 +   +D                       G +P    NK ++    L  DG+V +
Sbjct: 927  RQEKQRQAQEDQLAATGQYIKEEGDHVENGTDTNGDEPKRFQNKEIKKYHALDVDGVVSI 986

Query: 836  GAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG--- 892
            G  L E      Y  +   R V  +   K+   +++  + S   +  SV P  +YI    
Sbjct: 987  GYLLKEGQ---VYINKYSPRNV--KDHVKDISKIDLNDLKSNEVKYKSVYP--SYIDKII 1039

Query: 893  ----------YRI----QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
                      Y+I     R P +GDKF+SR GQKG+  +    ED+PFT+SG+ PD++ N
Sbjct: 1040 FTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMN 1099

Query: 939  PHGFPSRMTIGFL 951
            PHGFPSRMT+G L
Sbjct: 1100 PHGFPSRMTVGKL 1112



 Score = 47.8 bits (112), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 741  MILNKSSYERG-FAHGCIFKSM-FIELES-----GYNYYGTETMYSGVDGSMMQAQIFFG 793
            ++ +KS+   G   +G IF    F E+ S     G+N    E +YSG+ G  ++  IF G
Sbjct: 1115 LVASKSAVLDGELKYGSIFSGTPFEEMASILFKYGFNCSSKELLYSGLTGEPLETYIFMG 1174

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
             ++YQ+L+HMV DK   +    R    +   +    +G + +G    ERD + +Y
Sbjct: 1175 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEM--ERDCLIAY 1227


>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
 gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
          Length = 1141

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 245/908 (26%), Positives = 376/908 (41%), Gaps = 149/908 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P EAR     Y+ P  + +    +G         +G +PIM+KSK   L  ++P +LI+ 
Sbjct: 99  PFEARVRNITYASPMYLEITLVENGVESIKDKVYIGDLPIMIKSKLDPLSKMSPEELIKI 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN---RGLLFSDLGVYIRSVK 247
            E PD+ GGYFI+ G EK++    +   N  +  +  A  N        S  G Y  SV 
Sbjct: 159 NEDPDDPGGYFIINGTEKVIIAQEDMVTNRVLVDEGKAGSNVLYTAKAISSTGSYRISVM 218

Query: 248 RD--ESATNNVLHFVTNGSARFMFSHRK-----------SMCLLGMMQSL------HEEG 288
            +  +  T  +      G   F    R            ++ L   +QSL          
Sbjct: 219 MELHKDGTITISFGGVPGKLPFAILMRALGFEKDQDIVYAVSLNPEVQSLLLPSLEASRS 278

Query: 289 IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSH 344
           I T  D+  + G     ++       N +E    ++     PHL     D   K   L+ 
Sbjct: 279 IATVDDALDYIGT----RVAIGQVRENRIERAKQVIDKYFFPHLGSSPKDRRKKGFFLAQ 334

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAV 391
           M   +  +  G  + D  D    + +   G L   L +              EK  T + 
Sbjct: 335 MANMILELSLGWREPDDRDHYANKRLKLAGDLLATLFRASFKNFVKDFNYQAEKVLTRS- 393

Query: 392 LKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHF 451
            K   I +  R+  +   + + LATG    GK    QL+         +  N M  +SH 
Sbjct: 394 -KRFKISSIVRSDVMTERIRHALATGTWVGGKTGVSQLL---------DRTNWMSMLSHL 443

Query: 452 RAVHRGSYFQEMRSSEP----RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           R V        +  S+P    R L    WG +CP  TP+G  CGL+ +L+    I+  I 
Sbjct: 444 RRV-----VSPLSRSQPLFKARDLHGTQWGRMCPFETPEGPNCGLVKNLSLLTYITVGIS 498

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE-------QALMVMLDGRIVGYILDQIATSLVP 560
            K   ++ + L  LG++P+   ++   E       +   V L+GR +GY  D     L  
Sbjct: 499 EK---KVENQLYKLGVIPVEEALKDAVENNNTQYLEMTRVYLNGRHIGYYPD--GEKLAS 553

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG------- 613
            +R ++  G+ +   + +VY +RP+        LY+ T  GR+ RP++ +  G       
Sbjct: 554 TIREMRRKGD-LHHEINVVYYERPQ-----IKELYVNTDAGRIRRPLIIVRNGKPAVTKR 607

Query: 614 NIEWIGTFEQVFMDICITMK----------EAYPGIT------------THRELSKTDFL 651
           +IE +   E+ F D+    K           AY  +             TH EL      
Sbjct: 608 DIEALRKGEKTFSDLVKEGKIEYLDAEEEENAYIALDPSDLLGPNGKEYTHLELWTAGIF 667

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A+ IP  + NQSPRN YQ  M KQ +G    N+  +   + + L  P  P  +    
Sbjct: 668 GVAASTIPYIEHNQSPRNTYQSAMVKQALGLYAANFNVRTDSRGHILHHPEKPLVQTKPL 727

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + +  +  P G NA+VA++SYTGY++EDA+I NKSS ERGF     F+           Y
Sbjct: 728 EVIRYNEKPAGQNAVVAIMSYTGYNIEDALIFNKSSVERGFMRSTFFRL----------Y 777

Query: 772 YGTETMYSGVDGSMMQA-----QIFFGVVHYQRLR--HMVSDKWQTKDYFGRDPANKALE 824
              E  Y G     ++      +I+ G   Y++L    ++S + +  D        +AL 
Sbjct: 778 STEEKKYPGGQEDKIEVPEAGVKIYRGFEVYKKLDPDGIISPETEVAD-------GEALI 830

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKE-SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
            K  P        +  E    Y +     ++  VT RY   E+  V+ V +S   T+ G 
Sbjct: 831 GKTSP-------PRFLEEFKEYGFGASVRKDTSVTIRYG--EKGVVDSVFISE--TQEGD 879

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
                    YRI   P +GDKFASR GQKG+  +  P  D+P+T+ G+VPDI+ NPH FP
Sbjct: 880 KLVKVRVRDYRI---PEIGDKFASRHGQKGVIGMLIPQYDMPYTEEGIVPDIIINPHAFP 936

Query: 944 SRMTIGFL 951
           SRMT+G L
Sbjct: 937 SRMTLGQL 944



 Score = 48.1 bits (113), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++ GY+  G E MY G  G ++   I  G+V+YQRL HMV+DK+  +
Sbjct: 978  MKKGYSPDGREVMYDGRTGEIIGVPIMIGIVYYQRLHHMVADKFHAR 1024


>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
 gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
          Length = 1165

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 261/1016 (25%), Positives = 415/1016 (40%), Gaps = 186/1016 (18%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L       +L + D+ P 
Sbjct: 32  KGLTDQ-INTADDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDP- 89

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K L + I   + S P       G       P E R     YS P  V V ++  
Sbjct: 90  --EFYLKYLDIRIGHKSTSPP-------GTKEVILPPHECRLRDLTYSAPIYVDVEYTRG 140

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRL-- 212
            K       E+GR+PIML+S +C L  +   Q+    E P + GGYFIV G EK++ +  
Sbjct: 141 RKIIMHKDLEIGRMPIMLRSNKCILDGIDEQQMARFDECPLDPGGYFIVNGTEKVILVQE 200

Query: 213 -LINNR-------------------------RNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
            L  NR                         + + I    N +     +  D+ + I   
Sbjct: 201 QLSKNRIIVEADEKKNIVQASVTSSTHERKSKTYVITKNDNIYLKHNSISEDIPIVIILK 260

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
               ++   +L  V     ++     + + ++   ++   E I TQ  +  + G+  K  
Sbjct: 261 AAGITSDLEILQLVCGQDPQY-----QDLFVVNFEEAAKLE-IFTQQQALNYVGKRVKTI 314

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
            +     L++++     +   I+ HL      + +K L ++ M  ++   +     +D  
Sbjct: 315 RRAGAPKLSQMQEGIEAIATTIIAHLTVSDLQFREKALYIAAMARRVLMTMHNPKMVDDR 374

Query: 363 DSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
           D +  + +   G L    +  L KK  S   A + +  +    RAS  ++ ++  + + N
Sbjct: 375 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANI-DKILKKPSRASEFDALLSINIHSNN 433

Query: 419 VSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
           ++ G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S 
Sbjct: 434 ITMGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSG 490

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGML 524
           PR L+   +G +C   TP+G  CGL+ +L     I+   E +P K L  +      LG+ 
Sbjct: 491 PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITSDDEELPIKKLCYVLGCEDILGID 550

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
             T       +    V ++G ++G    +     V   R L+  G K+   + I Y    
Sbjct: 551 SATLY----ADGNFGVCVNGTLIG--CTRFPVKFVSDFRNLRRSG-KVSAFISI-YTNSH 602

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGN---------------------------IEW 617
           +K       +++ T  GR+ RP++ +   N                           +E+
Sbjct: 603 QKA------VHIATDGGRICRPLIIIGEKNKSKVNEHHLAKLLSGKWAFDDFLKDGLVEY 656

Query: 618 IGTFEQVFMDICI---TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           +   E+    I +    + E      TH E+     L  +A LIP P  NQSPRN YQC 
Sbjct: 657 LDVNEENDSLIALYEHDLVEHSYQTFTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCA 716

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ +G    N   +    LY +  P  P  +    + +D D  P G NA+VAV+SY+G
Sbjct: 717 MGKQAIGVIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQNAVVAVMSYSG 776

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YD+EDA++LNKSS +RGF    + +   I L+   N+  T+ + SG+        IF   
Sbjct: 777 YDIEDALVLNKSSIDRGFGRCQVLRKNTITLKRYPNH--TKDLVSGMRVDENGEPIFPHA 834

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK---------------- 838
                                           LGPDGL  VG K                
Sbjct: 835 A-------------------------------LGPDGLGEVGMKVENGQVYVNKCVPNNA 863

Query: 839 ----LNERDPMYSYWKESEN-RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
               L   D  ++  + +E+ R V   Y   E   V+ V MS    +   +      +  
Sbjct: 864 GESVLGSNDQQHNQQQTAESHREVPAFYKAPEPAYVDQVMMSVSDNDQALIK-----VLL 918

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           R  R P +GDKF+SR GQKG+C +    EDLPF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 919 RQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVG 974



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    +   
Sbjct: 1010 VDKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPT 1069

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    DG + +G    ERD + +Y              G  ++ +E + +SS   E   +
Sbjct: 1070 EGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFE-VDI 1112

Query: 885  TPNCAYIGY 893
               C  +GY
Sbjct: 1113 CNQCGLMGY 1121


>gi|405122465|gb|AFR97232.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. grubii
           H99]
          Length = 1123

 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 232/907 (25%), Positives = 378/907 (41%), Gaps = 141/907 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R T S YS P  V V +  + K       ++G +P+ML+S  C+L+    A+L   
Sbjct: 97  PMECRLTDSTYSAPIYVDVEYMGEEKRSKQRGVQIGMLPVMLRSDLCNLKGKNEAELARM 156

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDL-G 240
           GE P + GGYF+V G EK++         R+L+   +   +  +  +    G+L   +  
Sbjct: 157 GECPMDPGGYFVVKGTEKVILVQEQLSKNRILVMKDKKDEVMAEVTSLDQAGILIGLVDS 216

Query: 241 VYIRSVKRDESATNNVLHFVTNGSARFM--FSHRKSMCLLGMMQSLH------------- 285
            + R VK    +  N L+   N    F+      K+M L    + L              
Sbjct: 217 THDRVVKTYVVSKANRLYLRHNSFKEFIPIVIALKAMGLTADKEILQLICGSDERYQEAF 276

Query: 286 --------EEGIHTQHDSKVFFGQIFKEKLQYDL----RHLNEVEICDYMLTNCILPHLD 333
                   +E   T+  +  + G         D     + L   +I    L   +L H+ 
Sbjct: 277 GVSLEEAAKEKTFTRRQALEWIGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVP 336

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----- 384
               ++  K + L+ M+ ++   +     +D  D +  + +   G L   L +       
Sbjct: 337 VRNMNFRPKCIYLATMSRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFN 396

Query: 385 ---KSGTSAVLKESDIYAAFRASS--------IESAMTNFLATGNVSAGKNSTLQLMQAS 433
              K     +L++ +    F A +        I  A    ++TGN S  +     + +A 
Sbjct: 397 SELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKR---FHVERAG 453

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
               +   ++R+ +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 454 ----VTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACG 509

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           L+ +L     I+  +P   L ++ + ++ +  + L    +      LMV ++G ++G  +
Sbjct: 510 LVKNLALMTHITTDVPEAPLVKL-AFMLGVEDISLVTGNELYRPGVLMVQVNGTLIG--V 566

Query: 552 DQIATSLVPKLRMLKIVGEK-------IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
             +A   V + R L+  G         I    +I+Y+   + G    P + +  G  R+ 
Sbjct: 567 TNMAKRFVRQFRKLRRAGRMSEFVSIFINHHHKIIYIAS-DGGRICRPMIIVEKGRSRVT 625

Query: 605 RPVMNL------------AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLS 652
              + L             AG +E++   E+    I     E   G TTH E+     L 
Sbjct: 626 TEHVRLLKEGKVTFDHFLRAGLVEYLDVNEENDSFIACYENEIEEG-TTHLEIEPFTILG 684

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
            +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    +
Sbjct: 685 AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIE 744

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
            +  +  P G NA VAV+SY+GYD+EDA+ILN++S +RGF    + K +   + + +N  
Sbjct: 745 LIGYNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKVTTPMRTFHNGS 804

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
              T Y                           D     D +          DK   DG+
Sbjct: 805 HERTAY--------------------------PDPPPRPDAY-------TFVDK--ADGM 829

Query: 833 VYVGAKLNERDPMYSYWKESENRY----------VTCRYSGKEEMCVEVVRMSSGFTEGG 882
              GA +N+ D M       + R           +   +   E + V+ V ++ G  E G
Sbjct: 830 TAPGATINQYDVMIHRETPVDTRGGGADTQLYKPMPVTHKTPEPILVDKVMLTEG--EDG 887

Query: 883 SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
           ++      I  R  R P +GDKF+SR GQKG+C +  P  D+PF D G+VPDI+ NPHGF
Sbjct: 888 ALIK----ILTRQTRRPELGDKFSSRHGQKGVCGLIVPQADMPFNDQGIVPDIIMNPHGF 943

Query: 943 PSRMTIG 949
           PSRMT+G
Sbjct: 944 PSRMTVG 950



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I +++G++Y G + + SG+ G  M+A ++FG ++YQ+
Sbjct: 961  GVVAGKLQYGTAFGGSKVVDMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQK 1020

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            L+HMV DK   +    R    +   +    DG + +G    ERD +  Y
Sbjct: 1021 LKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEM--ERDCLIGY 1067


>gi|426373973|ref|XP_004053858.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gorilla
           gorilla gorilla]
          Length = 1031

 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 232/865 (26%), Positives = 380/865 (43%), Gaps = 135/865 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 68  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 127

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 128 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 175

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR---KSMCLLGMMQSLHEEGIHTQHDSKVFFGQIF 303
             ++ +  N+   V  G  RF   H    + + ++ + ++L           K    ++ 
Sbjct: 176 THEKKSRTNMA--VKQG--RFYLRHNTLSEDIPIVIIFKAL-----------KYIGNKVR 220

Query: 304 KEKLQYDLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCL-SHMTCKLFHVVQGMVQLD 360
           ++++        ++E    +L + IL H+   ++  +  C+ + +  +   + QG  ++D
Sbjct: 221 RQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVD 280

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLA-TGNV 419
             D    + +   G L   +L ++                     + +++ +F++  GN 
Sbjct: 281 DRDYYGNKRLELAGQLINDILFQD------------------CDWVRNSLMSFISLQGNW 322

Query: 420 SAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWG 477
           S  +      M   G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG
Sbjct: 323 SLKRFK----MDRQG---VTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWG 375

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA 537
            +CP  TP+G  CGL+ +L     I+  +    + ++ S L    +  L     S P   
Sbjct: 376 MLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NV 434

Query: 538 LMVMLDGRIVGYILDQIATSLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGL 594
            +V L+G I+G I D     LV   R+++  G   E +  S  +               +
Sbjct: 435 FLVFLNGNILGVIRDH--KKLVNTFRLMRRAGYINEFVSISTNLTDR-----------CV 481

Query: 595 YLFTGPGRMLRPVM---------------NLAAGN-----------IEWIGTFEQVFMDI 628
           Y+ +  GR+ RP +                LA G            +E++   E+   +I
Sbjct: 482 YISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNI 541

Query: 629 CITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
            +  +      TTH E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N R
Sbjct: 542 AL-YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQR 600

Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
            +    +Y L  P  P  +    + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S 
Sbjct: 601 NRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASL 660

Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
           +RGF    ++K+    L+     Y  +T +  V G M+ A     +  ++ L        
Sbjct: 661 DRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGPMLDAATRKPIWRHEIL-------- 707

Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEE 866
              D  G     + +E+K     LV        + P+       + +Y  V   Y G  +
Sbjct: 708 ---DADGICSPGEKVENK---QVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATD 761

Query: 867 MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             +E V +SS   +   +      +  R  R P +GDKF+SR GQKG+C +  P ED+PF
Sbjct: 762 SYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPF 816

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
            DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 817 CDSGICPDIIMNPHGFPSRMTVGKL 841



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 878 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 937

Query: 828 GPDGLVYVGAKLNERDPMYSY 848
             DG + +G    ERD +  Y
Sbjct: 938 SRDGGLRLGEM--ERDCLIGY 956


>gi|221059854|ref|XP_002260572.1| DNA-directed RNA polymerase [Plasmodium knowlesi strain H]
 gi|193810646|emb|CAQ42544.1| DNA-directed RNA polymerase, putative [Plasmodium knowlesi strain H]
          Length = 1401

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 255/964 (26%), Positives = 418/964 (43%), Gaps = 189/964 (19%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P   RQ    YS P  V V +            E+GR+P+ML+S  C L N +  +L++ 
Sbjct: 296  PQICRQRDLTYSAPIYVDVEYVKGSNIIRKNNVEIGRLPVMLRSDICILNNKSEEELMKL 355

Query: 191  GEHPDEWGGYFIVGGHEKLVRL---LINNRRNHPIAIKRN------------------AW 229
            GE P + GGYFIV G E+++ +   L  NR    + IK N                   +
Sbjct: 356  GECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICATITSTTAESKSRCAIVY 415

Query: 230  KNRGL------LFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF----SHRKSMC-LL 278
            KN  L         D+GV I            +L  +   S + +F    SHR  +  +L
Sbjct: 416  KNNKLYLKHNSFIEDIGVCI------------ILRAMGYESDQEIFQMIGSHRNYLNGIL 463

Query: 279  GMMQSLHEEGIHTQHDSKVFFGQIFKEKL--------QYDLRHLNEVEICDY---MLTNC 327
              +  L+ E I T  D+ ++ G+  + +L          + +  NE +I +     L+  
Sbjct: 464  LSLYDLYSENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDIIEEGLDFLSRV 523

Query: 328  ILPHLD-----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQL-- 380
            +L H+      D+ +K  C+  M  ++        +LD +D    + +   G L   L  
Sbjct: 524  LLSHIQQKNKYDFRNKARCICLMIRRVLDSANNKNELDDKDYYGNKRLELAGQLISLLFE 583

Query: 381  ---------LKKE---------KSGTSAVLKES--------DIYAAFRASSIESAMTNFL 414
                     LKK+         +S  ++ LK S        D++ +     I   M   +
Sbjct: 584  DLYKRFYFTLKKQIDQTLSKYMQSNYTSKLKYSGNVNETYPDVFRSLPKDIITRGMQAAI 643

Query: 415  ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLR 472
            +TGN +  +      M+ SG   +++ ++R+ +++    + R  S F++ R  S PR L+
Sbjct: 644  STGNWNIKRFK----MEKSG---VSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQ 696

Query: 473  TDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI-- 530
               WG +CP  TP+G  CGL+ +L     ++    ++    +  +L +LG+     +   
Sbjct: 697  PSQWGVLCPCDTPEGESCGLVKNLALMTHVTN--DNENNEHLIEILYTLGVEDSDSLTGE 754

Query: 531  QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL 590
            +   E    V+ +G ++G  + +     + ++R L+  G KI + + I           L
Sbjct: 755  EMYKEGIFFVIFNGILLG--VHKKPRIFMRRIRCLRRYG-KIGQFVSIY-------DNFL 804

Query: 591  YPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEWIGTFEQV 624
            +  +Y+ T  GR+ RP++ +  G                           IEWI   EQ 
Sbjct: 805  HKAIYISTDGGRLCRPLIIVENGKSKLTQEHILSLENGTINFFDLLKSSVIEWIDVNEQ- 863

Query: 625  FMDICITMKEAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
              ++ I + E+   I T+H E+     L  +A LIP P+ NQSPRN YQC MGKQ +G  
Sbjct: 864  -NNLLIALNESDISINTSHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAI 922

Query: 684  CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
              N   +    LY L  P  P  +    + ++ +  P G NAIVAV+S+ GYD+EDA+++
Sbjct: 923  GYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFGGYDIEDAIVM 982

Query: 744  NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            NKSS +RGF      +   +EL+  +N      + S +  S MQ +        +R +  
Sbjct: 983  NKSSIDRGFGRCMSLRKHAVELKKYFNGSNDLVLPSPLAISKMQER------QEKRRQEK 1036

Query: 804  VS---DKW----QTKDYFGRDPANKALEDK------------LGPDGLVYVGAKLNERDP 844
            +S   DK     + +D+          E K            L  DG+V +G  L E   
Sbjct: 1037 LSQSQDKQRQAKEERDHVENGAGTNVDEQKKFHNKEIKKYHALDMDGVVSIGYLLKEGQ- 1095

Query: 845  MYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG------------ 892
               Y  +   R V  +   K+   +++  + +   +  SV P  +YI             
Sbjct: 1096 --VYINKYSPRNV--KDHVKDISKIDLNDLKANEIKYKSVYP--SYIDKIIFTENAEGLK 1149

Query: 893  -YRI----QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
             Y+I     R P +GDKF+SR GQKG+  +    ED+PFT+SG+ PD++ NPHGFPSRMT
Sbjct: 1150 IYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMT 1209

Query: 948  IGFL 951
            +G L
Sbjct: 1210 VGKL 1213



 Score = 47.4 bits (111), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 9/115 (7%)

Query: 741  MILNKSSYERG-FAHGCIFKSM-FIELES-----GYNYYGTETMYSGVDGSMMQAQIFFG 793
            ++ +KS+   G   +G IF    F E+ S     G+N    E +YSG+ G  ++  IF G
Sbjct: 1216 LVASKSAVLDGELKYGSIFSGTPFEEMASILFKYGFNCSSKELLYSGLTGEPLETYIFMG 1275

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
             ++YQ+L+HMV DK   +    R    +   +    +G + +G    ERD + +Y
Sbjct: 1276 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEM--ERDCLIAY 1328


>gi|167382955|ref|XP_001733337.1| DNA-directed RNA polymerase III subunit RPC2 [Entamoeba dispar
           SAW760]
 gi|165901325|gb|EDR27409.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
           dispar SAW760]
          Length = 1115

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 259/971 (26%), Positives = 418/971 (43%), Gaps = 167/971 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI SF++ +DE +   V+    I  +    T  L  +   +  P V    V        P
Sbjct: 59  HIDSFNYFIDEEIKQIVKANDKITCDA-DPTFYLKYLDVKVDTPCVE---VDYKKESITP 114

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPAQLIE 189
            E R     Y+ P    + ++ D K    F K V  G +PIML+SK C L N T  + I 
Sbjct: 115 QECRLRDISYTAPILANIQYTRDKK---IFRKTVTIGYMPIMLQSKHCVLYNNTFEEFIR 171

Query: 190 RGEHPDEWGGYFIVGGHEKLV---------RLLINN-----------RRNHPIAIKRNAW 229
            GE P + GGYFIV G E+++         R+LI                H +  +   +
Sbjct: 172 HGECPMDPGGYFIVKGVERVILSQEQMSKNRILIETTTQGFLSASVTSATHEVKSRTVVY 231

Query: 230 KNRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFS---HRKSMCLLG 279
             +G L+        DL + I        +    L FV N     M +     K+  +L 
Sbjct: 232 LKKGKLYLKHNSLTEDLPIMIVIKAMGMESDMEFLQFVGNHYTSKMINSIEECKTKDVLN 291

Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DY 335
             ++L   G H     K++ GQ      +  +    ++E    +L N +LPH++    ++
Sbjct: 292 QREALRYIGNHL----KIYTGQ------KGYISKRPKIEEARDVLANLVLPHIEVNRYNF 341

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-----EKS 386
             K + L+ M   +    +   +LD +D    + +   G L    +  L K+     + +
Sbjct: 342 KTKIIYLALMVNWILKADE-TGELDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNA 400

Query: 387 GTSAVLKES-----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
               + K+S     DI        I   + + L+TGN    + +    M  +G   + + 
Sbjct: 401 ANKGLTKKSRSETFDIIKCISPHRITQGLIHSLSTGNWVLKRFN----MDRAG---ITQV 453

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S+F++ R  S PR L+   WG +CP  TP+G  CGL+ + +  
Sbjct: 454 LSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSL- 512

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL---MVMLDGRIVGYILDQIAT 556
             ++E         I ++L +LG+     +I      AL   +V L+G+++G  + Q   
Sbjct: 513 --LTEVTTDSDDQAIVTMLFNLGVEDAN-LISGDEVNALSSYLVFLNGQLLG--IHQNPI 567

Query: 557 SLVPKLRMLKI---VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM----- 608
             + + R+L+    +G+K+  SL +  ++R          + + +  GR+ RP++     
Sbjct: 568 HFLKQCRLLRRHGRLGKKV--SLHLNEMQR---------SINISSDGGRVCRPLIVVENC 616

Query: 609 ---------------------NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                 L  G IE++   E+    I I+  E     TTH E+  
Sbjct: 617 KSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAISENEINEH-TTHLEIDP 675

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +GT   N   +    LY L  P  P  +
Sbjct: 676 LSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRIDTLLYLLYYPQIPMVK 735

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               D ++ D  P G NA+VAV+SY+GYD+EDA ILNK+S +RG+    +++     ++ 
Sbjct: 736 TKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECVIKK 795

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            Y     + +    D                  R +   K+++ D+ G       L    
Sbjct: 796 -YKNGACDRVVCPTDEE----------------REL--PKYKSLDFDGVCSPGSILN--- 833

Query: 828 GPDGLVYVGAKLNERDPMYSY-------WKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
              G +Y    LN++ P+ +         K+ E R     Y G     V+ V ++S   E
Sbjct: 834 --PGSIY----LNKQVPINTVGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLITSNEEE 887

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
                P    I  R  R P +GDKF+SR GQKG+  +    ED+PFT++G+ PD++ NPH
Sbjct: 888 -----PLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTNTGICPDVIMNPH 942

Query: 941 GFPSRMTIGFL 951
           GFPSRMT+G L
Sbjct: 943 GFPSRMTVGKL 953



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E+GY+Y G E +YSG+ G  + A IF G V+YQ+L+HMV DK   +    +    + 
Sbjct: 985  ILIEAGYSYDGKEELYSGITGKALNAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQ 1044

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG + +G    ERD +  Y
Sbjct: 1045 PTEGRSRDGGLRLGEM--ERDCLIGY 1068


>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
           guilliermondii ATCC 6260]
          Length = 1156

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 248/982 (25%), Positives = 407/982 (41%), Gaps = 176/982 (17%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF+F +D  L       +L + D+ P   + Y K L + +   + S P       G 
Sbjct: 56  HLDSFNFFVDVDLKKIVQANELVLSDVDP---DFYLKYLDIRVGHKSTSSP-------GT 105

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V V ++   K       E+GR+PIMLKS +C L  +  
Sbjct: 106 KEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRMPIMLKSNKCILDGIND 165

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV---------RLLI-----------------NNRR 218
            Q+ +  E P + GGYFIV G EK++         R+++                 + R+
Sbjct: 166 HQMAKLDECPIDPGGYFIVNGTEKVILIQEQLSKNRIIVEADEKKGIVQASVTSSTHERK 225

Query: 219 NHPIAIKRNA--WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
           +    I +N   +     +  D+ + I       ++   +L  V   + ++     + + 
Sbjct: 226 SKTYVITKNEKIYLKHNSIGEDVPIVIILKAAGITSDLEILQLVCGSNPQY-----QDLF 280

Query: 277 LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DD 334
            +   ++   E + TQ  +  + G+  K   +     L++++     +   I+ H+  DD
Sbjct: 281 AVNFEEAARLE-VFTQQQALNYVGKRVKTVRRAGAPKLSQLQEGIEAIATTIIAHITVDD 339

Query: 335 --YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGT 388
             + +K L ++ M  ++   +     +D  D +  + +   G L    +  L KK  S  
Sbjct: 340 LQFREKALYIAMMARRVLMTMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDF 399

Query: 389 SAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMA 439
            A + +  +    RAS  ++ ++  + + N++ G N  +           M+ +G   + 
Sbjct: 400 KANI-DKILKKPSRASEFDALLSINIHSNNITMGMNRAISTGNWSLKRFKMERAG---VT 455

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
             ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L 
Sbjct: 456 HVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 515

Query: 498 TNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI--PEQALMVMLDGRIVGYILDQIA 555
               I+     +    I SV  +LG   +  V  +    +    + L+G I+G    +  
Sbjct: 516 LMTHITTDDEEE---PIRSVCFALGCEDILEVDSATLHADGNFGIYLNGTIIGTT--RFP 570

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM------- 608
              V   R L+  G+  P     ++    +        + + T  GR+ RP++       
Sbjct: 571 AQFVGNFRALRRSGKVSP--FISIHTNTHQNA------VQIATDGGRVCRPLIIVDSKNK 622

Query: 609 -NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT--------------------THRELSK 647
            N+ A +++ +   E VF D        Y  +                     TH E+  
Sbjct: 623 ANVKAVHLKKLMAGEWVFEDFIKHGLVEYLDVNEENDSFIALYERDLEANQNITHLEIEP 682

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 683 FTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVK 742

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +D D  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    + +   + L+ 
Sbjct: 743 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKR 802

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N+  T+ + SG+        IF                                   L
Sbjct: 803 YPNH--TKDVVSGMRVDEQGEPIF-------------------------------PHASL 829

Query: 828 GPDGLVYVGAK--------------------LNERDPMYSYWKESENRYVTCRYSGKEEM 867
           GPDGL  VG K                    L   +P +    ES +R     Y G E  
Sbjct: 830 GPDGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQQNVES-HRETPAYYRGPEPS 888

Query: 868 CVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
            ++ V MS    +   +      +  R  R P +GDKF+SR GQKG+C +    EDLPF 
Sbjct: 889 YIDQVMMSVSDNDQTLIK-----VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFN 943

Query: 928 DSGLVPDIVFNPHGFPSRMTIG 949
           D G+VPDI+ NPHGFPSRMT+G
Sbjct: 944 DDGIVPDIIMNPHGFPSRMTVG 965



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 999  ILVKNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1058

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1059 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFE-V 1101

Query: 883  SVTPNCAYIGY 893
             V  NC  +GY
Sbjct: 1102 DVCNNCGLMGY 1112


>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
 gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
          Length = 1149

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 249/1005 (24%), Positives = 417/1005 (41%), Gaps = 172/1005 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L        L + D+ P 
Sbjct: 24  KRLTDE-INTAEDKWNLLPAFLKIKGLVKQHLDSFNYFVDVDLKKILNANSLVLSDVDP- 81

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             + Y K + + +   + S P       G       P E R     YS P  V V ++  
Sbjct: 82  --DFYVKYIDIRVGHKSTSPP-------GTKEVILPPHECRLRDLTYSAPIYVDVEYTRG 132

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---- 210
            K    +  E+GR+PIML+S +C L  +    + +  E P + GGYFIV G EK++    
Sbjct: 133 RKIIRHYDLEIGRMPIMLRSNKCMLDGMDDKMMAQVDECPLDPGGYFIVNGTEKVILVQE 192

Query: 211 -----RLLI-----------------NNRRNHPIAIKRN--AWKNRGLLFSDLGVYIRSV 246
                R+++                 + R++    I +N   +     +  D+ + I   
Sbjct: 193 QLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIVLK 252

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
               ++   +L  V      +     + + ++   ++   E + TQ  + ++ G+  K  
Sbjct: 253 AAGVTSDLEILQLVCGSDPNY-----QDLFVVNFEEAAKLE-VFTQQQALLYLGKRVKTI 306

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
            +     L++++     +   I+ HL      + +K L ++ M  ++   +     +D  
Sbjct: 307 RRAGAPKLSQLQEGIEAIATTIIAHLTVVDLQFREKALYMAMMARRVVMAMHNPKMVDDR 366

Query: 363 DSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
           D +  + +   G L    +  L KK  S   A + +  +    R S  ++ ++  + + N
Sbjct: 367 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANI-DKILKKPSRTSEFDALLSINIHSNN 425

Query: 419 VSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
           ++ G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S 
Sbjct: 426 ITMGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSG 482

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
           PR L+   +G +C   TP+G  CGL+ +L     I+       + ++ + L    +L L 
Sbjct: 483 PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEGPIKKLCTALGCESILGLD 542

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
                + E    V L+G ++G    +     V   R L+  G+    +   +Y    ++ 
Sbjct: 543 SATLHV-EGNFGVYLNGTLLGAT--RFPVKFVTDFRRLRRAGK--VSAFVSIYTNTHQQA 597

Query: 588 MGLYPGLYLFTGPGRMLRPVMN--------------------------LAAGNIEWIGTF 621
                 +++ T  GR+ RP++                           L  G +E++   
Sbjct: 598 ------VHIATDGGRICRPLIIVENNKSKVEANHLAKLLNGEWEFDDFLKEGLVEYLDVN 651

Query: 622 EQVFMDICITMKE--AYPGIT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
           E+    I +  K+    P  T TH E+     L  +A LIP P  NQSPRN YQC MGKQ
Sbjct: 652 EENDSLIALYEKDIGENPNATVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 711

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
            +G    N   +    LY +  P  P  +    + ++ D  P G NA VAV+SY+GYD+E
Sbjct: 712 AIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELINYDKLPAGQNATVAVMSYSGYDIE 771

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DA++LNKSS +RGF    + +   ++L+   N+  ++ + SG+        IF       
Sbjct: 772 DALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNH--SKDILSGMRVDENDEPIF------- 822

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------------NERDPM 845
                                       LGPDGL  VG+K+             N  D  
Sbjct: 823 ------------------------PHQALGPDGLGEVGSKIENGQVFANKCVPTNSGDSS 858

Query: 846 YSYWKESEN-RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
               ++ E+ R     Y G E   V+ V MS    +   +      +  R  R P +GDK
Sbjct: 859 LGQPQQVESHREAPLFYKGPEPSYVDQVMMSVSDNDQALIK-----VLLRQTRRPELGDK 913

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           F+SR GQKG+C +    EDLPF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 914 FSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVG 958



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN S  Y   F    + +   I +E G++Y G + +YSG+ G  +QA IFFG ++YQ
Sbjct: 968  AGVLNGSLEYGTCFGGSKLEEMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQ 1027

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
            +L+HMV DK   +    R    +   +    DG + +G    ERD + +Y          
Sbjct: 1028 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM--ERDCVIAY---------- 1075

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                G  ++ +E + +SS   E   V   C  +GY
Sbjct: 1076 ----GASQLLLERLMISSDAFE-VDVCNKCGLMGY 1105


>gi|407843710|gb|EKG01580.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1683

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 195/641 (30%), Positives = 307/641 (47%), Gaps = 83/641 (12%)

Query: 364  SIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRA-SSIESAMTNFLATGNVSAG 422
            S + Q I+  G    +L   E SG    L++   Y   R+ +    A+   L TGN++  
Sbjct: 857  SHLFQSILQLG----ELPGNESSGVIDQLRQYTDYCERRSINEPLDALHRLLITGNLTLD 912

Query: 423  KNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPV 482
            +       Q SG+V+MAE++N  R+    R +HRG    EMRSSE R+   +A+GFIC V
Sbjct: 913  REEDFYCPQTSGWVVMAEHLNFYRFFEQLRCLHRGKTIAEMRSSEVRKYPCEAFGFICMV 972

Query: 483  HTPDGTPCGLLNHLTTNCQISEYIPS------KVLAQIPSVLVSL---GMLP--LTPVIQ 531
            H+PDG  CG+LNH++ +  +SE +P+       +LA+I      L   G L   +  ++ 
Sbjct: 973  HSPDGADCGVLNHMSVSTFVSESVPAGSRNEEDLLARITEEFHGLRNGGSLDSLVDRLVG 1032

Query: 532  SIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV--GEKIPKS-------------L 576
            ++P     V ++G+++GY+  + A  +   L   K +  G  +  S             +
Sbjct: 1033 TVP-----VWVEGKMLGYLAPEEAERVCKALLRKKALKTGSSMELSGIVRRHSVNAFSMV 1087

Query: 577  EIVYL----KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------IEWIGTFEQV 624
            E+VY+    K P+       GLY+F   GRM+RPV  + + +        + +IGT+EQ 
Sbjct: 1088 EVVYVPPGNKDPQ-------GLYIFYDNGRMMRPVQQIESTSHGDELPFPLVYIGTWEQT 1140

Query: 625  FMDICITMKEAYPGITT------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
            ++DI     +   G+T         E + ++ LS  +  IP  + N SPRN++QC + KQ
Sbjct: 1141 WLDIASVPSDLLDGLTQLNRKYEFMEQNGSNILSLTSATIPFFEHNCSPRNLFQCGLSKQ 1200

Query: 679  TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
            + GT      ++   KL+R+  P     R +  D   +D+  +G NA++A+++YTGYD++
Sbjct: 1201 SAGTQLQTLAWRKEAKLFRMYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDLD 1260

Query: 739  DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            DA+ILN ++ + G     I  +  I   SG        ++  +   +   Q F   +   
Sbjct: 1261 DAVILNSTASQFGMLTAGITVAKVI-TASGKGEKDDVFVFQNL---LSNGQPFTPELDAH 1316

Query: 799  RLRHMVSDKWQTKDY-FGRDPANKALEDKLGPDGLVYVGAKLNER-DPM-----YSYWKE 851
             L    +    T+   F  D     L D       VY  AK  ER DP+     Y Y + 
Sbjct: 1317 GLPRKRAVPGTTELLSFDSDHKYPTLRD----SSAVYCCAKRYERIDPLMNKKVYEYTRH 1372

Query: 852  SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
               ++   ++   E   V  V      T  G   P  A + +RI R P +GDKF+SR GQ
Sbjct: 1373 HVTKW--WQFDKGENAWVHSV---VPLTYDGP-DPTSALVVFRIPRPPAIGDKFSSRHGQ 1426

Query: 912  KGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            KG   +   A DLPF T  G+ PDI+ NPH FPSRMT+G +
Sbjct: 1427 KGTLPLHIRAYDLPFSTRDGITPDIIINPHAFPSRMTVGMV 1467



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN YG E +  G+ G  M+A +F G+  YQRLRHMV+DKWQ +
Sbjct: 1507 KAGYNRYGREKLIDGISGEEMEADVFMGISGYQRLRHMVNDKWQAR 1552



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 169 PIMLKSKRCHLRNL-TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M++  RC LR + T        E   E GGYFI+ G E+++R L+  R N P+ I R 
Sbjct: 543 PEMVRGARCSLRGVDTRNDHFRAFEEQKEVGGYFIMRGGERILRSLLMQRCNVPLNIFRE 602

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            + ++G  FS   V IR  +       N  ++ T G   F F+ +
Sbjct: 603 RFSSQGPFFSPKAVVIRCKRPSGLTIQNYFYYATTGEVVFSFARK 647


>gi|209489360|gb|ACI49130.1| hypothetical protein Cbre_JD16.002 [Caenorhabditis brenneri]
 gi|341883892|gb|EGT39827.1| hypothetical protein CAEBREN_00456 [Caenorhabditis brenneri]
          Length = 1152

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 246/990 (24%), Positives = 410/990 (41%), Gaps = 181/990 (18%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  ++E +   +     I  +       L  +   +  P    G + +  +K  P
Sbjct: 44  HLVSFDHFVNEEIRNIMLSNQKITSDA-NPNFYLKYLDIRVGTPSSEEG-LNMTHDKITP 101

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     YS P +V + ++   +        +GR+PIML+S +C LR+L    L    
Sbjct: 102 QECRLRDMTYSAPISVDIEYTRGNQRVLKKDLIIGRMPIMLRSSKCILRDLAEEGLARVQ 161

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDES 251
           E P + GGYF+V G EK++ L+      + I + RN+ K       +L   + S   +  
Sbjct: 162 ECPYDPGGYFVVKGSEKVI-LIQEQLSKNRIMVGRNSSK-------ELQCEVLSSTSERK 213

Query: 252 ATNNVLHFVTNGSARFMFSHRK-------SMCLLGM----------------------MQ 282
           +      +VT    +++  H +       S+    M                       Q
Sbjct: 214 SKT----YVTVKKGKYLVRHNQLTDDVPVSIIFKAMGIESDYDIVSTIGHEEKYVSAFAQ 269

Query: 283 SLHE---EGIHTQHDSKVFFGQIFKEKLQYDLRHL-----------NEVEICDYMLTNCI 328
           ++ E    G++TQ  +  +     K +       L            E E  D+ L+N +
Sbjct: 270 TIEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVDF-LSNSM 328

Query: 329 LPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK- 383
           + H+     ++  K + L  MT +L     G  +LD  D    + +   GSL   L +  
Sbjct: 329 ITHIACPDGNFKMKAIYLGQMTRRLIQTELGENELDDRDFYGNKRLELAGSLLALLFEDV 388

Query: 384 --------EKSGTSAVLKES----DIYAAFRASSIESAMTNFLATGN--VSAGKNSTLQL 429
                   ++   +A++K      DI    R   I + + N ++TGN  +   +   L +
Sbjct: 389 FKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGV 448

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDG 487
            Q          ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G
Sbjct: 449 TQV---------LSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 499

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQS---IPEQALMVMLDG 544
             CGL+ +L     I+     K + ++   L++ G+  L  V  S    PE  L + L+G
Sbjct: 500 EACGLVKNLALISHITTDSDEKPVLRL---LLNSGVEDLNNVHFSHINKPENTL-IFLNG 555

Query: 545 RIVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
            ++G  +D +     V  LR   ++ E +  S  I               +++ +  GR+
Sbjct: 556 VLIGTAVDPERVVRAVRDLRRSGLLSEFVSVSRSITNR-----------SVFISSDGGRL 604

Query: 604 LRPVMNLAAG-------NIEWIGTFEQVFMDIC-----------------ITMKEAYPGI 639
            RP + +  G       N+  +   +++F D                   I + E   G+
Sbjct: 605 CRPYIIVKDGKPMLTQENVTELKEGKRIFEDFVDDGIVEYLDVNEMNDALIAVYENEIGL 664

Query: 640 -TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
            TTH E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y L
Sbjct: 665 ETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLL 724

Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
             P  P  +    + ++ +  P G N I+AV+SY+GYD+EDA++LNK+S +RG+    ++
Sbjct: 725 CYPQRPLVKSKTIELINFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVY 784

Query: 759 KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           K +           GT   Y       +       +     ++H   DK           
Sbjct: 785 KHV----------KGTARKYPNQTFDRLLGPALDPITKKPIMKHKNLDK----------- 823

Query: 819 ANKALEDKLGPDGLVYVGAK-------LNERDPMYS-----YWKESENRYVTCRYSGKEE 866
                      +G+V+ GA+       +N+  P+ S         +    +  R    ++
Sbjct: 824 -----------EGIVFAGARILPKQTIINKHMPVVSGDNNPASASANTIGIAGRQVDYKD 872

Query: 867 MCVEVVRMSSGFTEGGSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
           + V     +  + E   +T N        +  R  R P +GDKF+SR GQKG+C +    
Sbjct: 873 VSVTYKTPTPSYAERVLLTYNEEEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQ 932

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ED+PF D G+VPD++ NPHG+PSRMT+G L
Sbjct: 933 EDMPFNDLGMVPDMIMNPHGYPSRMTVGKL 962



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 999  GYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGR 1058

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              +G + +G    ERD + +Y
Sbjct: 1059 SREGGLRLGEM--ERDCLIAY 1077


>gi|157870530|ref|XP_001683815.1| putative RNA polymerase I second largest subunit [Leishmania major
            strain Friedlin]
 gi|68126882|emb|CAJ04831.1| putative RNA polymerase I second largest subunit [Leishmania major
            strain Friedlin]
          Length = 1616

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 176/589 (29%), Positives = 282/589 (47%), Gaps = 68/589 (11%)

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
            +   L TGN++  +       Q SG+V+MAE++N  R+    R VHRG    +MRSSE R
Sbjct: 831  LARLLVTGNINLDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVR 890

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL-----GML 524
            +   +A+GFIC V +PDG  CG+LNHL+ +   S    + + AQ+  ++           
Sbjct: 891  KYPCEAYGFICMVQSPDGEDCGVLNHLSVSTISSNSPDAAMTAQLREIVRKAVPGVRSRA 950

Query: 525  PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK------------IVGEKI 572
             L+ V+  + E  + V ++G ++GY+    A      LR  K            IV  K 
Sbjct: 951  TLSTVVDQLCE-TVPVWMEGELLGYLSPADAVEAAATLRERKALTLRSQVHVTGIVRRKD 1009

Query: 573  PK---SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG----------NIEWIG 619
                 +LE+VY+    K      GLY+F   GR++RPV  L +            + +IG
Sbjct: 1010 ASPLHTLEVVYVAPKSKDPA---GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIG 1066

Query: 620  TFEQVFMDICITMKEAYPGITT------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            T+EQ ++DI     +    +        + E + T+ +S  +  IP  + N SPRN++QC
Sbjct: 1067 TWEQSWLDIAAVPSDPLDAVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQC 1126

Query: 674  QMGKQTMGT--PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
             + KQ+ GT    L WR +   KL+R   P     R +  D   +D+  +G NA++A+++
Sbjct: 1127 GLSKQSSGTQLQALAWRKE--AKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILA 1184

Query: 732  YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
            YTGYDM+DA+I+N ++ +RG     +  +  +      +      ++  +   +   + F
Sbjct: 1185 YTGYDMDDAVIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNL---LSTGERF 1241

Query: 792  FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER-DP-----M 845
               +    L    ++       F RD     L D    +  VY  AK  ER DP     +
Sbjct: 1242 TAELEANGLPPKRANASLDAFSFDRDHKYPGLRD----NNDVYCCAKRVERVDPFTNKAV 1297

Query: 846  YSYWKESENRYVTCRY--SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
            Y Y +    ++   R+   G++    +V+ +     +     P    + +RI R PTVGD
Sbjct: 1298 YEYTRHHATKW---RHFDKGEDAWVQQVIPLVYSGPD-----PTSVLMIFRIPRPPTVGD 1349

Query: 904  KFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            KF+SR GQKG   +   + DLPF T SG+ PD++ NPH FPSRMT+G +
Sbjct: 1350 KFSSRHGQKGTLPLHIRSHDLPFATASGITPDVIINPHAFPSRMTVGMV 1398



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYN YG E +  G+ G  M+A +F G+  YQRLRHMVSDKWQ +
Sbjct: 1437 VKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQAR 1483



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 169 PIMLKSKRCHLRNLTPAQLIERG-EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M+K  RC LRN+       R  E   E GGYFI+ G E+++R L+  R N PI I R 
Sbjct: 474 PEMVKGARCALRNVDARLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIYRE 533

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            +  +G  FS   V IR  +       N  ++ T G   F F+ +
Sbjct: 534 KFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSFARK 578


>gi|256081823|ref|XP_002577167.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043957|emb|CCD81503.1| putative dna-directed RNA polymerase III subunit [Schistosoma
           mansoni]
          Length = 1126

 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 240/937 (25%), Positives = 398/937 (42%), Gaps = 165/937 (17%)

Query: 112 ISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIM 171
           I  P V  G  G+  ++  P + R     Y+G   V V +    +        +GR+PIM
Sbjct: 59  IKPPTVNDG--GVVASRVTPHDCRLRDLTYAGEILVDVTFVRQNEVVSKKGVLIGRMPIM 116

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           LKS  C L   +P++L+   E P + GGYFI+GG EK+V +     +N  I I+ ++   
Sbjct: 117 LKSSICVLNGKSPSELMRLKECPLDPGGYFIIGGTEKVVLMQEQTSKNRLI-IEEDS--K 173

Query: 232 RGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS------------ARFMFSHRKSMCLLG 279
           RGL+ S      ++  +    T +   ++++ S            A  + S ++ + L+G
Sbjct: 174 RGLVCSVTSSSAQTKSKTNIVTKDDKFYLSHNSFIVDVPIAILFKAMNITSDQELLQLIG 233

Query: 280 MMQSLH-----------EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI 328
             +S+            E  IHT  D+  +     ++         + +      L + I
Sbjct: 234 TEESVWANFVPSLKLCLEYNIHTCLDACNWLHSRLRQPRYRTAFGADIILEIQRFLRDII 293

Query: 329 LPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQL---- 380
           + H++    ++  +   L  M   L    +  + ++  D    + I   GSL   L    
Sbjct: 294 ITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIPVNDRDFYGNKRIELAGSLLALLFEDV 353

Query: 381 ---------LKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                    L   K  T       DI    +   I   +   +++GN    +    ++M+
Sbjct: 354 FKTFNEDLWLTVSKIDTKRRCTPFDISRHIKTWMITEQLNRAISSGNWIIKR---FRMMR 410

Query: 432 ASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTP 489
                 + + ++R+ Y++    + R  S F++ R  S PR +    WG ICP  TP+G  
Sbjct: 411 HG----VTQVVSRLSYVAALGHMTRMTSQFEKTRKVSGPRSIHASQWGLICPSDTPEGEA 466

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
           CGL+ ++   C ++  +    L ++ S   +  +  +        +   ++ ++G+ +G+
Sbjct: 467 CGLVKNVALMCHVTVEVDDAHLIELISNYYTFPLYQM-----RYAKNEYVIYVNGKPIGF 521

Query: 550 ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP--- 606
              Q    L   +R L+  G         VY+K+       Y  +++ +  GR  RP   
Sbjct: 522 T--QHPGKLCVLIRGLRRSGR--IHGFVSVYIKQA------YQCVHVVSDGGRFCRPYII 571

Query: 607 -------------------VMN----LAAGNIEWIGTFEQ----VFMD-ICITMKEAYPG 638
                              V+N    L  G +E++   E     V MD  C+T    Y  
Sbjct: 572 LCNGRPLVTESVLQDLRHNVLNWDDLLKKGLVEYLDVNELNDCLVAMDESCLTDGNHY-- 629

Query: 639 ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
             TH E+     L  +A LIP PD NQSPRN YQC MGKQ +GT  LN + +      ++
Sbjct: 630 --THMEIDPATILGVVAGLIPYPDHNQSPRNTYQCAMGKQAIGTVALNQQIRFDTLQCQM 687

Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
             P  P  +      +  D  P G NA+VA++SY+GYD+EDA+++N++S +RGFA  C++
Sbjct: 688 VYPQKPLVQSKTIQMMHFDELPAGQNAVVAIMSYSGYDVEDALVINQASIDRGFARACVY 747

Query: 759 KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           +   + L+   N      +Y  + G  ++ +   GV+                       
Sbjct: 748 RRSGVHLKMHEN-----AVYDRLMGPSIERET--GVL----------------------- 777

Query: 819 ANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWK---------------ESENRY 856
             +  ++ L  DG+ Y+GA +N+R        P+ S                  E+   +
Sbjct: 778 --RRGDEVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSLSLNVNTPENATEF 835

Query: 857 VTC--RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGI 914
             C   Y G E   VE V  S+  +EG         I  R  R P VGDKF+SR GQKG+
Sbjct: 836 KRCPVDYKGIEPSYVEKVMFST--SEGNQAV---VKILLRQTRRPEVGDKFSSRHGQKGV 890

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             +    EDLPF+ +GL PDI+ NPHGFPSRMT+G L
Sbjct: 891 VGLIVRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKL 927



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++ GY+Y G E +YSGV G+ ++A I+FG V+YQRL+HMV DK   +
Sbjct: 961  IDHGYHYLGKEILYSGVTGAPLEAFIYFGPVYYQRLKHMVMDKVHAR 1007


>gi|340058209|emb|CCC52563.1| putative RNA polymerase I second largest subunit [Trypanosoma vivax
            Y486]
          Length = 1590

 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 184/621 (29%), Positives = 300/621 (48%), Gaps = 64/621 (10%)

Query: 378  LQLLKKEKSGTSAVLKESDIYA--AFRASSIE--SAMTNFLATGNVSAGKNSTLQLMQAS 433
            ++L  K    TS +L++   Y+  A R + IE    +   L TGN +  +       Q S
Sbjct: 771  VKLTDKPTRETSDILQQIRHYSEYAARRNGIEPLDPVLRLLLTGNFNLDREEDFFCPQTS 830

Query: 434  GFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLL 493
            G+V++AE++N  R+   FR +HRG    EMRSSE R+   +A+GF+C VH+PDG  CG+L
Sbjct: 831  GWVVIAEHLNFYRFFEQFRCLHRGKTIAEMRSSEVRRYPCEAYGFLCMVHSPDGEDCGVL 890

Query: 494  NHLTTNCQISEYIP--SKVLAQIPSVL-VSLGMLPLTPVIQSIPEQ---ALMVMLDGRIV 547
            NHL+ +  +S   P  S+  A++   L V+L  +       +  +Q    + V ++G++V
Sbjct: 891  NHLSVSTILSASQPASSRQWAEMQETLAVALRNVRSNASRAASVDQLVGTVPVWVEGKVV 950

Query: 548  GYILDQIATSLVPKLRMLKIVGEK---------------IPKSLEIVYLKRPEKGMGLYP 592
            GY+    A      LR+ KI+  +                  ++E+VY+    K     P
Sbjct: 951  GYLTPMEAQQTAAALRLKKIIKSRSVVGVTGIVRRHDVSALNTVEVVYVPPENKDP---P 1007

Query: 593  GLYLFTGPGRMLRPVMNLAAGN--------IEWIGTFEQVFMDICITMKEAYPGITT--- 641
            GLY+F   GR++RPV  + + +        I ++GT+EQ + DI     +    +     
Sbjct: 1008 GLYIFYEHGRLMRPVQQIESSSRGTDLPFPIVYLGTWEQTWQDIAGVPSDLLNAVMQLNR 1067

Query: 642  ---HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
               + E +  + LS  ++ IP  + N SPRN++QC + KQ+ GT   +  ++   KL+R+
Sbjct: 1068 KYEYMEQNGYNILSLTSSTIPFFEHNCSPRNLFQCGLSKQSAGTQLQSMAWRKEAKLFRM 1127

Query: 699  QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
              P     R +  D  ++D+  +G NA++A+++YTGYD++DA+I+N +S + G  +  I 
Sbjct: 1128 YFPQRYISRTLPMDYYNLDDVNLGVNAVIAILAYTGYDLDDAVIINSTSTQFGMLNAGIT 1187

Query: 759  KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY-FGRD 817
             +  +  +      G +         +   Q F   +    L     +   +K + F  D
Sbjct: 1188 VAKVVTAKGK----GEKDDVFVFQNQLPSGQPFTPELDAHGLPRKRLEPGSSKFFSFDSD 1243

Query: 818  PANKALEDKLGPDGLVYVGAKLNER-DPM-----YSYWKESENRYVTCRYSGKEEMCVEV 871
                AL +       VY  AK  E  DP+     Y Y +    R+    +   E+  V  
Sbjct: 1244 HQCPALRE----SSAVYCCAKRFEHVDPLTNEKVYEYARHHVTRWR--HFDKGEDAWVHS 1297

Query: 872  VRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF-TDSG 930
            V +   F       P    + +RI R P VGDKF+SR GQKG   +   + DLPF T  G
Sbjct: 1298 V-IPLAF---DGPDPTSVLLVFRIPRPPLVGDKFSSRHGQKGTLPLHIRSHDLPFSTHDG 1353

Query: 931  LVPDIVFNPHGFPSRMTIGFL 951
            + PD++ NPH FPSRMT+G +
Sbjct: 1354 ITPDVIINPHAFPSRMTVGMV 1374



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +GYN YG E +  GV G  M+A++F G+  YQRLRHMV+DKWQ +
Sbjct: 1415 AGYNRYGREKLIDGVSGVEMEAEVFLGISGYQRLRHMVNDKWQAR 1459



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 169 PIMLKSKRCHLRNLTPA-QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M+   RC LR +          E   E GGYFI+ G E+++R L+  R N PI I+R 
Sbjct: 450 PEMVMGSRCALRRVHHRYDHFSALEEQKEVGGYFIMRGGERIIRALLMQRCNVPINIQRE 509

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATN-NVLHFVTNGSARFMFS-----HRKSMCLLGMM 281
            +      FS   V IR  KR    TN N  ++ T G   F F+     H  +  LL  +
Sbjct: 510 QFSAHDSTFSSRAVVIR-CKRPSGLTNQNYFYYSTTGDVVFSFARKVVWHISASLLLFAL 568

Query: 282 QSLHEEGI 289
            S H   I
Sbjct: 569 NSQHRSSI 576


>gi|330833900|ref|YP_004408628.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
 gi|329566039|gb|AEB94144.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
          Length = 1124

 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 249/958 (25%), Positives = 407/958 (42%), Gaps = 142/958 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SF+  +   L   +++ A I  EI G  LK+ + K  + +P+V     G    +  P
Sbjct: 24  HLDSFNDFIKNKLQEIIDEQAEITTEIPG--LKIRLGKIRVGKPRVREADKG--DKEITP 79

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  + +    +   G      +G +PIMLKS        T  +L+E G
Sbjct: 80  MEARLRNLTYAAPVYLEMTPIENNIEGDLTEVYIGDIPIMLKSIADPTSEFTSEKLVEIG 139

Query: 192 EHPDEWGGYFIVGGHEKLV---RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR--SV 246
           E P + GGYFIV G E+++     L  NR    +    +   +   + S    Y    ++
Sbjct: 140 EDPKDPGGYFIVNGSERVIVTQEDLATNRVLTDVGKTGSNITHTAKIISSTSGYRVPITI 199

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR-------KSMCLL---------GMMQSLHE-EGI 289
           ++ + +T +V      G   F    R       + + L           ++ S+ +   I
Sbjct: 200 EKLKDSTIHVSFPAVPGKIPFAILMRALGIETDEEITLAVSLDPDIQNELLPSIEQASSI 259

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            ++ D+  F G       + ++R    ++  + +L    LPH+     D   K   L+  
Sbjct: 260 ISKDDALDFIGNRIAIGQKREMR----IQKAEQVLDKYFLPHIGTNASDRTAKAYYLAFA 315

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
             KL  +  G  + D +D    + +   G L+  L +              EKS      
Sbjct: 316 VSKLIELYLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVKDLVFQLEKSKVRG-- 373

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
           +   + A  R   I   + + LATGN   G+    QL+  + ++ M         +SH R
Sbjct: 374 RRLAVNALVRQDIISERIRHALATGNWVGGRTGVSQLLDRTNWLSM---------LSHLR 424

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            V   S  +   + E R L    WG +CP  TP+G   GL+ +L    QIS  +  K   
Sbjct: 425 RVV-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLGQISVGVNEK--- 480

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQA---------LMVMLDGRIVGYILDQIATSLVPKLR 563
            +  +L +LG++P+  VI+    Q            V+L+GR++GY  +   + L  K+R
Sbjct: 481 SVERLLYNLGVIPIEEVIKKYRSQEEKSEDYENWSKVILNGRLIGYYPN--GSELAEKIR 538

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM--------------- 608
             +  GE +   + + Y +        Y  +Y+ +  GR+ RP++               
Sbjct: 539 EKRREGE-LSDEVNVNYTR-----TETYNEVYINSDSGRVRRPLIVVRHGKPLVTKEDIE 592

Query: 609 NLAA-----------GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANL 657
           NL             G IE++   E+    I +  K+      TH E+     L   A++
Sbjct: 593 NLKKGKITFDTLIREGKIEFLDAEEEENAYIALEPKDVTKD-HTHLEIWTPAILGITASI 651

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +    + +   
Sbjct: 652 IPYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYT 711

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G NAI A++SYTGY+MEDA+I+NKSS ERG     +F+S F  L     Y   E  
Sbjct: 712 ERPAGNNAIFALMSYTGYNMEDAVIMNKSSIERG-----MFRSTFFRL-----YSAEEIK 761

Query: 778 YSGVDGSMMQAQIFF---GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVY 834
           Y G      + +I     GV  Y           + KDY+    +N  +  ++   G   
Sbjct: 762 YPG----GQEDEILLPEPGVRGY-----------KGKDYYRLLESNGIVSPEVDVKGGDV 806

Query: 835 VGAKLNERDPMYSYWKESEN---RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
           +  K++    +  + + S +   R  +      E   V++V + +  +EG  +      +
Sbjct: 807 LIGKVSPPRFLQEFKELSPDQAKRDTSIITRHGERGTVDLV-LVTETSEGNKLVK----V 861

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             R  R P +GDKFA+R GQKG+  +  P  D+P+T SGL PDI+ NPH  PSRMT+G
Sbjct: 862 RVRDLRIPEIGDKFATRHGQKGVVGMIIPQVDMPYTTSGLTPDIILNPHALPSRMTVG 919



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
            L SGY   G+E +Y G  G  ++ +I FG+V+YQ+L HMV+DK   +   GR P
Sbjct: 955  LNSGYLGDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHGR---GRGP 1005


>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
           98/2]
 gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
           98/2]
 gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
           98/2]
          Length = 1124

 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 253/966 (26%), Positives = 412/966 (42%), Gaps = 158/966 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  +   L   +++   I  EI G  LK+ + K  I +P+V     G    +  P
Sbjct: 27  HLDSYNDFVRNKLQEIIDEQGEIPTEIPG--LKVRLGKIRIGKPRVRESDRG--EREISP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +          +G +PIMLKS    +   T  +LIE G
Sbjct: 83  MEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIG 142

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           E P + GGYFIV G E+++         R+L++  +        N      ++ S  G  
Sbjct: 143 EDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGS-----NITHTAKIISSTAGYR 197

Query: 243 IR-SVKRDESATNNV--------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------ 287
           +  +++R +  T +V        + FV    A  + + R  +  + +   +  E      
Sbjct: 198 VPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEVQNELFPSLE 257

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFL 340
               I    D+  F G     ++    +  N +E    ++    LPHL    +D   K  
Sbjct: 258 QASSIANVDDALDFIGS----RVAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAY 313

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL----------------QLLKKE 384
            L++   K+  +  G  + D +D    + +   G L+                 QL K +
Sbjct: 314 YLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSK 373

Query: 385 KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
             G    LK     A  R   +   + + LATGN   G+    QL+  + ++ M      
Sbjct: 374 VRGRKLALK-----ALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWLSM------ 422

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
              +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    QI+ 
Sbjct: 423 ---LSHLRRVI-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAV 478

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIA 555
            I  +++ +    L  +G++P+  VI+ + E         +   V+L+GR++GY  D   
Sbjct: 479 GINERIVEK---TLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQD--G 533

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN- 614
             L  K+R  +  GE I   + + ++            +++    GR+ RP++ ++ GN 
Sbjct: 534 GELANKIRERRRKGE-ISDEVNVGHIV-----TDFINEVHVNCDSGRVRRPLIIVSNGNP 587

Query: 615 ---IEWIGTFEQ---VFMDICITMK----------EAYPGIT--------THRELSKTDF 650
              IE I   E     F D+    K           AY  +         TH E+     
Sbjct: 588 LVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSPAI 647

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A++IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +   
Sbjct: 648 LGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRA 707

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            D +   N P G NAI+AV+S+TGY+MED++I+N+SS ERG     +++S F  L     
Sbjct: 708 LDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERG-----MYRSTFFRL----- 757

Query: 771 YYGTETMYSGVDGS---MMQAQI--FFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKAL 823
           Y   E  Y G       M +A +  + G  +Y+ L    +VS + + K           L
Sbjct: 758 YSTEEVKYPGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVK-------GGDVL 810

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             K+ P   +    +  E  P  +    S    +  R+    EM +  + + +   EG  
Sbjct: 811 IGKVSPPRFL---QEFKELSPEQAKRDTS----IVTRHG---EMGIVDLVLITETAEGNK 860

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
           +      +  R  R PT+GDKFASR GQKG+  +  P  D+P+T  G+VPDI+ NPH  P
Sbjct: 861 LVK----VRVRDLRIPTIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALP 916

Query: 944 SRMTIG 949
           SRMT+G
Sbjct: 917 SRMTLG 922



 Score = 48.5 bits (114), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L  GY    TE +Y G  G  ++++I+FGVV+YQ+L HMV+DK   +
Sbjct: 958  LRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHAR 1004


>gi|300709367|ref|XP_002996849.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
 gi|239606175|gb|EEQ83178.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
          Length = 1091

 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 256/964 (26%), Positives = 410/964 (42%), Gaps = 161/964 (16%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           L   HI SF++ ++  +   V+    ++ +I   T  L      IS P +    +    +
Sbjct: 19  LARQHIESFNYFINHEIASIVKANDIVDSDI-DHTFYLKYTDVRISVPSLEENMIK---H 74

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ- 186
             YP E R     Y+    + + +  + +        +GR+PIML+S +C L++    Q 
Sbjct: 75  TLYPMECRLRDLTYASNLYIDIEYVRNKQIIRKKDVFIGRIPIMLQSDKCLLKSKNNEQK 134

Query: 187 ---------LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL-- 235
                    L    E P + GGYFI+ G EK+            I I+    KNR ++  
Sbjct: 135 LSEESLNANLFFSQECPYDIGGYFIIKGIEKV------------ILIQEQLSKNRIIIED 182

Query: 236 -----FSDLGVYIRSVKRDESAT-NNVLHFVTNGS------------ARFMFSHRKSMCL 277
                FS +       K   S    N  +++ N S            A  M S ++ +  
Sbjct: 183 GPKGFFSSMTSSTHEQKSKTSVIYKNDCYYLVNSSFSEDIPVVAIIKACNMISDKEIVEC 242

Query: 278 LGM---------MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI 328
           +G           + +++  IHT  ++ ++       K++ D   L EV     ++   I
Sbjct: 243 IGKEFADQIVLSFEEIYKHKIHTSKEAALYLAGFI--KMKPDANKLEEVR---NVIVEKI 297

Query: 329 LPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE 384
           LP++     D  +K + +  M  +L    + ++  + +D I  +     G L   L +  
Sbjct: 298 LPNVKFDGVDLRNKGIMICLMVRRLIFTQKNIITEEDKDFIGNKRFELAGQLLSILFEDS 357

Query: 385 --------KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQA 432
                   K     +L +      F A +  +  TN + T    A  +    L    M  
Sbjct: 358 FKKFNWELKRSIDKILTKRLRAQEFDALTFFNLQTNIITTSMQRAISSGNWNLRRFRMDR 417

Query: 433 SGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPC 490
           SG   +   + R  Y+S    + +  S+F++ R  S PR L T +WG  CP  TP+G  C
Sbjct: 418 SG---VTHVLIRHSYISAVGMMTKVNSHFEKTRKVSGPRALHTSSWGMFCPADTPEGESC 474

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI---QSIPEQALMVMLDGRIV 547
           GL+ +L+    ++E      L  I  +L SLG++  T V+   + + ++  +V L+G I 
Sbjct: 475 GLVKNLSL---LAEVTTDSDLDTIIYILSSLGVIQ-TGVLYTHEMVSDEMYLVFLNGDIF 530

Query: 548 GYILDQIATSLVPKLR-------MLKIVGEKIPKSLEIV-------YLKRP------EKG 587
           G  + Q    LV   R       + K V   I ++L+ V        L RP      E  
Sbjct: 531 G--VTQNCFGLVKNFRNYRRKGVINKYVSIYIDENLKSVNIAADNGRLCRPLIIITDEVR 588

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAA-GNIEWIGTFEQVFMDICITMK-EAYPGITTHREL 645
             L  GL++ +      +   +L   G IE++   E+   D  I +K E     TTH E+
Sbjct: 589 QNLKKGLFVISDLEMKYKSFDDLVEDGRIEYLDANEE--NDALIALKIEDISDKTTHLEI 646

Query: 646 SKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPF 705
           +    L  +A LIP P+ NQSPRN YQC MGKQ +G   LN + +  G   +L     P 
Sbjct: 647 ADFAILGYVAGLIPFPNHNQSPRNTYQCAMGKQAIGYIALNSKKRFDGISLQLCNTQKPL 706

Query: 706 FRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIEL 765
                 +  D +  P G NA+VAV+SY+GYD+EDA+I+NK S +RGFA   ++K+    L
Sbjct: 707 TTTQILNITDYNEIPAGQNAMVAVMSYSGYDIEDALIINKDSLDRGFARTEVYKTHCYVL 766

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
           +  Y+   ++ +   +   ++                        KD  G+ P    LE 
Sbjct: 767 KK-YSDNRSDVILPDIKNPILD-----------------------KDGIGK-PGELLLE- 800

Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
                G VY+    N+  P  + +K     +    + G       V+   S   E  ++ 
Sbjct: 801 -----GTVYI----NKNSPCENGYK-----FTGGVHKGNPAFIDRVLITKS---EDQTLI 843

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
             C     R  R P +GDKF+SR GQKG+  +  P  ++PFTDSGLVPDI+ NPHGFPSR
Sbjct: 844 KIC----LRQTRVPEIGDKFSSRHGQKGVVGLIVPQINMPFTDSGLVPDIIMNPHGFPSR 899

Query: 946 MTIG 949
           MT+G
Sbjct: 900 MTVG 903



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 749  ERGFAHGCIFKSMFIEL------ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E   +   IFK   ++L       +G+N+ G +  YSG+ G  + A IF+G V YQRL+H
Sbjct: 917  EGKISDATIFKKNEVDLVCDILSNNGFNFGGKDCFYSGISGEPIYAYIFYGPVFYQRLKH 976

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES 852
            MV+DK   +    R    +   +    DG + +G    ERD +  Y   S
Sbjct: 977  MVADKIHMRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIGYGASS 1024


>gi|449708606|gb|EMD48033.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Entamoeba histolytica KU27]
          Length = 1141

 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 256/974 (26%), Positives = 416/974 (42%), Gaps = 173/974 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFE----IYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           HI SF++ +DE +   V+    I  +     Y K L + +          P   V     
Sbjct: 59  HIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKV--------DTPCVEVDYKKE 110

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPA 185
              P E R     Y+ P    + ++ D K    F K V  G +PIML+SK C L N T  
Sbjct: 111 SITPQECRLRDISYTAPILANIQYTRDNK---IFRKTVTIGYMPIMLQSKHCVLYNNTFE 167

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV---------RLLINN-----------RRNHPIAIK 225
           + I  GE P + GGYFIV G E+++         R+LI                H +  +
Sbjct: 168 EFIRHGECPMDPGGYFIVKGVERVILSQEQMSKNRILIETTTQGFLSASVTSATHEVKSR 227

Query: 226 RNAWKNRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFS---HRKSM 275
              +  +G L+        DL + I        +    L FV N     M +     K+ 
Sbjct: 228 TVVYLKKGKLYLKHNSLTEDLPIMIVIKAMGMESDMEFLQFVGNHYTSKMINSIEECKAK 287

Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-- 333
            +L   ++L   G H     K++ GQ      +  +    ++E    +L N +LPH++  
Sbjct: 288 DVLNQREALRYIGNHL----KIYTGQ------KGYISKRPKIEEARDVLANLVLPHIEVN 337

Query: 334 --DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---- 383
             ++  K + ++ M   +    +   +LD +D    + +   G L    +  L K+    
Sbjct: 338 RYNFKTKIIYIALMVNWILKADE-TGELDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTD 396

Query: 384 -EKSGTSAVLKES-----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
            + +    + K+S     DI        I   + + L+TGN    + +    M  +G   
Sbjct: 397 LQNAANKGLTKKSRSETFDIIKCISPHRITQGLIHSLSTGNWVLKRFN----MDRAG--- 449

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ Y+S    + R  S+F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 450 ITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKN 509

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
            +    ++E         I ++L +LG+    L    +     + +V L+G+++G  + Q
Sbjct: 510 FSL---LTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLG--IHQ 564

Query: 554 IATSLVPKLRMLKI---VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-- 608
                + + R+L+    +G+K+  SL +  ++R          + + +  GR+ RP++  
Sbjct: 565 NPIHFLKQCRLLRRHGRLGKKV--SLHLNEMQR---------SINISSDGGRVCRPLIVV 613

Query: 609 ------------------------NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
                                    L  G IE++   E+    I I   E     TTH E
Sbjct: 614 ENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEH-TTHLE 672

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +     L  +A LIP P  NQSPRN YQC MGKQ +GT   N   +    LY L  P  P
Sbjct: 673 IDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIP 732

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             +    D ++ D  P G NA+VAV+SY+GYD+EDA ILNK+S +RG+    +++     
Sbjct: 733 MVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECV 792

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           ++  Y     + +    D                  R +   K+++ D+ G       L 
Sbjct: 793 IKK-YKNGACDRVVCPTDEE----------------REL--PKYKSLDFDGVCSPGSILN 833

Query: 825 DKLGPDGLVYVGAKLNERDPMYSY-------WKESENRYVTCRYSGKEEMCVEVVRMSSG 877
                 G +Y    LN++ P+ +         K+ E R     Y G     V+ V ++S 
Sbjct: 834 -----PGSIY----LNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLITSN 884

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             E     P    I  R  R P +GDKF+SR GQKG+  +    ED+PFT++G+ PD++ 
Sbjct: 885 EEE-----PLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTNTGICPDVIM 939

Query: 938 NPHGFPSRMTIGFL 951
           NPHGFPSRMT+G L
Sbjct: 940 NPHGFPSRMTVGKL 953



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E+GY+Y G E +YSG+ G  + A IF G V+YQ+L+HMV DK   +    +    + 
Sbjct: 985  ILIEAGYSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQ 1044

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG + +G    ERD +  Y
Sbjct: 1045 PTEGRSRDGGLRLGEM--ERDCLIGY 1068


>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
           5348]
 gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
           polymerase, subunit B' [Metallosphaera sedula DSM 5348]
          Length = 1124

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 251/958 (26%), Positives = 407/958 (42%), Gaps = 142/958 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SF+  +   L   +++   I  EI G  LK+ + K  + +P+V     G    +  P
Sbjct: 24  HLDSFNDFIKNKLQEIIDEQGEIITEIPG--LKIRLGKIRVGKPRVREADKG--DKEITP 79

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +   G      +G +PIMLKS        +  +L+E G
Sbjct: 80  MEARLRNLTYAAPIFLTMTPVENNIEGDPTEVHIGDIPIMLKSIADPTSEFSQDKLVEIG 139

Query: 192 EHPDEWGGYFIVGGHEKLV---RLLINNRRNHPIA-IKRNAWKNRGLLFSDLGVYIR-SV 246
           E P + GGYFI+ G E+++     L  NR    +     N      ++ S  G  +  ++
Sbjct: 140 EDPKDPGGYFIINGSERVIVTQEDLATNRVLTDVGKAGSNVTHTAKIISSTSGYRVPITI 199

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRK-----------SMCLLGMMQ-----SLHE-EGI 289
           +R + +T +V      G   F    R            ++ L   +Q     SL +   I
Sbjct: 200 ERLKDSTIHVSFPSAPGRIPFAILMRALGVETDEDITLAVSLDPQIQNELLPSLEQASSI 259

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            ++ D+  F G       + ++R    ++  + +L    LPH+     D   K   L+  
Sbjct: 260 SSKEDALDFIGNRVAIGQKREMR----IQKAEQILDKYFLPHIGTNPSDRVAKAYYLAFA 315

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
             KL  +  G  + D +D    + +   G L+  L +              EKS      
Sbjct: 316 VSKLIELYLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVKDLVFQLEKSKVRG-- 373

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
           +   I A  R   I   + + LATGN   G+    QL+  + ++ M         +SH R
Sbjct: 374 RRLAINALVRPDIISERIRHALATGNWVGGRTGVSQLLDRTNWLSM---------LSHLR 424

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            V   S  +   + E R L    WG +CP  TP+G   GL+ ++    QIS  I  K L 
Sbjct: 425 RVV-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNIALLAQISVGINEKSLE 483

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQA---------LMVMLDGRIVGYILDQIATSLVPKLR 563
           +    L +LG++P+   I+ +  +            V+L+GR++GY  D     L  K+R
Sbjct: 484 R---TLYNLGVVPIDDAIKKVKSEEGQSENYQTWSKVILNGRLIGYYPD--GRELAEKIR 538

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM--------------- 608
             +  GE +   + + Y          +  +Y+ +  GR+ RP++               
Sbjct: 539 ESRREGE-LSDEVNVSY-----NITETFNEVYINSDSGRVRRPLIVVKHGKPLVTKEDIE 592

Query: 609 NLAA-----------GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANL 657
           NL             G IE++   E+    I +  K+      TH E+     L   A++
Sbjct: 593 NLKKGKITFDTLVKEGKIEFLDAEEEENAYIALEPKDVTKD-HTHLEIWAPAILGITASI 651

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +    + +   
Sbjct: 652 IPYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYT 711

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G NAI A++SYTGY+MEDA+I+NKSS +RG     +F+S F  L     Y   E  
Sbjct: 712 ERPAGNNAIFALMSYTGYNMEDAVIMNKSSVDRG-----MFRSTFFRL-----YSAEEIK 761

Query: 778 YSGVDGSMMQAQIFF---GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVY 834
           Y G      + +I     GV  Y           + KDY+    +N  +  ++   G   
Sbjct: 762 YPG----GQEDEILLPEPGVRGY-----------KGKDYYRLLESNGIVSPEVDVKGGDV 806

Query: 835 VGAKLNERDPMYSYWKESEN---RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
           +  K++    +  + + S +   R  +      E   V++V + +  +EG  +      +
Sbjct: 807 LIGKVSPPRFLQEFKELSPDQAKRDTSIITRHGERGTVDLV-LVTETSEGNKLVK----V 861

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             R  R P +GDKFA+R GQKG+  +  P  D+P+T SGLVPDI+ NPH  PSRMT+G
Sbjct: 862 RVRDLRIPEIGDKFATRHGQKGVIGMLIPQVDMPYTTSGLVPDIILNPHALPSRMTVG 919



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
            LE GY   G+E +Y G  G  ++ +I FG+V+YQ+L HMV+DK   +   GR P
Sbjct: 955  LEHGYLSDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHGR---GRGP 1005


>gi|407043800|gb|EKE42160.1| DNA-directed RNA polymerase, beta subunit domain containing protein
           [Entamoeba nuttalli P19]
          Length = 1141

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 256/974 (26%), Positives = 416/974 (42%), Gaps = 173/974 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFE----IYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           HI SF++ +DE +   V+    I  +     Y K L + +          P   V     
Sbjct: 59  HIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKV--------DTPCVEVDYKKE 110

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPA 185
              P E R     Y+ P    + ++ D K    F K V  G +PIML+SK C L N T  
Sbjct: 111 SITPQECRLRDISYTAPILANIQYTRDNK---IFRKTVTIGYMPIMLQSKHCVLYNNTFE 167

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV---------RLLINN-----------RRNHPIAIK 225
           + I  GE P + GGYFIV G E+++         R+LI                H +  +
Sbjct: 168 EFIRHGECPMDPGGYFIVKGVERVILSQEQMSKNRILIETTTQGFLSASVTSATHEVKSR 227

Query: 226 RNAWKNRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFS---HRKSM 275
              +  +G L+        DL + I        +    L FV N     M +     K+ 
Sbjct: 228 TVVYLKKGKLYLKHNSLTEDLPIMIVIKAMGMESDMEFLQFVGNHYTSKMINSIEECKAK 287

Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-- 333
            +L   ++L   G H     K++ GQ      +  +    ++E    +L N +LPH++  
Sbjct: 288 DVLNQREALRYIGNHL----KIYTGQ------KGYISKRPKIEEARDVLANLVLPHIEVN 337

Query: 334 --DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---- 383
             ++  K + ++ M   +    +   +LD +D    + +   G L    +  L K+    
Sbjct: 338 RYNFKTKIIYIALMVNWILKADE-TGELDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTD 396

Query: 384 -EKSGTSAVLKES-----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
            + +    + K+S     DI        I   + + L+TGN    + +    M  +G   
Sbjct: 397 LQNAANKGLTKKSRSETFDIIKCISPHRITQGLIHSLSTGNWVLKRFN----MDRAG--- 449

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ Y+S    + R  S+F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 450 ITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKN 509

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
            +    ++E         I ++L +LG+    L    +     + +V L+G+++G  + Q
Sbjct: 510 FSL---LTEVTTDSNDQAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLG--IHQ 564

Query: 554 IATSLVPKLRMLKI---VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-- 608
                + + R+L+    +G+K+  SL +  ++R          + + +  GR+ RP++  
Sbjct: 565 NPIHFLKQCRLLRRHGRLGKKV--SLHLNEMQR---------SINISSDGGRVCRPLIVV 613

Query: 609 ------------------------NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
                                    L  G IE++   E+    I I   E     TTH E
Sbjct: 614 ENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEH-TTHLE 672

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +     L  +A LIP P  NQSPRN YQC MGKQ +GT   N   +    LY L  P  P
Sbjct: 673 IDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIP 732

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             +    D ++ D  P G NA+VAV+SY+GYD+EDA ILNK+S +RG+    +++     
Sbjct: 733 MVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECV 792

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           ++  Y     + +    D                  R +   K+++ D+ G       L 
Sbjct: 793 IKK-YKNGACDRVVCPTDEE----------------REL--PKYKSLDFDGVCSPGSILN 833

Query: 825 DKLGPDGLVYVGAKLNERDPMYSY-------WKESENRYVTCRYSGKEEMCVEVVRMSSG 877
                 G +Y    LN++ P+ +         K+ E R     Y G     V+ V ++S 
Sbjct: 834 -----PGSIY----LNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLITSN 884

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             E     P    I  R  R P +GDKF+SR GQKG+  +    ED+PFT++G+ PD++ 
Sbjct: 885 EEE-----PLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTNTGICPDVIM 939

Query: 938 NPHGFPSRMTIGFL 951
           NPHGFPSRMT+G L
Sbjct: 940 NPHGFPSRMTVGKL 953



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E+GY+Y G E +YSG+ G  + A IF G V+YQ+L+HMV DK   +    +    + 
Sbjct: 985  ILIEAGYSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQ 1044

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG + +G    ERD +  Y
Sbjct: 1045 PTEGRSRDGGLRLGEM--ERDCLIGY 1068


>gi|401423257|ref|XP_003876115.1| RNA polymerase I second largest subunit,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322492356|emb|CBZ27630.1| RNA polymerase I second largest subunit,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1615

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 177/589 (30%), Positives = 283/589 (48%), Gaps = 68/589 (11%)

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
            +   L TGN++  +       Q SG+V+MAE++N  R+    R VHRG    +MRSSE R
Sbjct: 830  LARLLVTGNMNLNREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVR 889

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL-----GML 524
            +   +A+GFIC V +PDG  CG+LNHL+ +   S    + + AQ+  ++           
Sbjct: 890  KYPCEAYGFICMVQSPDGEDCGVLNHLSLSTISSNSPDAAMTAQLREIVRKAVPGVRSRA 949

Query: 525  PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK------------IVGEKI 572
              + V+  + E  + V ++G ++GY+    A      LR LK            IV  K 
Sbjct: 950  THSTVVDQLCE-TVPVWMEGELLGYLSPADAAEAATTLRQLKALTLRSQVHVTGIVRRKD 1008

Query: 573  P---KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG----------NIEWIG 619
                ++LE+VY+    K      GLY+F   GR++RPV  L +            + +IG
Sbjct: 1009 ASPLQTLEVVYVAPKNKDPA---GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLMFIG 1065

Query: 620  TFEQVFMDICITMKEAYPGITT------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            T+EQ ++DI     +    +        + E + T+ +S  +  IP  + N SPRN++QC
Sbjct: 1066 TWEQSWLDIAAVPSDPLDAVMQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQC 1125

Query: 674  QMGKQTMGT--PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
             + KQ+ GT    L WR +   KL+R   P     R +  D   +D+  +G NA++AV++
Sbjct: 1126 GLSKQSSGTQLQALAWRKE--AKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAVLA 1183

Query: 732  YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
            YTGYDM+DA+I+N ++ +RG     +  +  +      +      ++  +   +   + F
Sbjct: 1184 YTGYDMDDAVIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNL---LSTGERF 1240

Query: 792  FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER-DP-----M 845
               +    L    ++       F RD     L D    +  VY  AK  ER DP     +
Sbjct: 1241 TAELEANGLPPKRANASLDAFSFDRDHKYPGLRD----NNDVYCCAKRVERVDPFTNKSV 1296

Query: 846  YSYWKESENRYVTCRY--SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
            Y Y +    ++   R+   G++    +V+ +     +     P    + +RI R PTVGD
Sbjct: 1297 YEYTRHHATKW---RHFDKGEDAWVQQVIPLVYSGPD-----PTSVLMIFRIPRPPTVGD 1348

Query: 904  KFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            KF+SR GQKG   +   + DLPF T SG+ PD++ NPH FPSRMT+G +
Sbjct: 1349 KFSSRHGQKGTLPLHIRSHDLPFATASGITPDVIINPHAFPSRMTVGMV 1397



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYN YG E +  G+ G  M+A +F G+  YQRLRHMVSDKWQ +
Sbjct: 1436 VKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQAR 1482



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 169 PIMLKSKRCHLRNLTPAQLIERG-EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M+K  RC LRN+       R  E   E GGYFI+ G E+++R L+  R N PI I R 
Sbjct: 474 PEMVKGARCALRNVDARLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIYRE 533

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            +  +G  FS   V IR  +       N  ++ T G   F F+ +
Sbjct: 534 KFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSFARK 578


>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
 gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
          Length = 1155

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 254/1009 (25%), Positives = 423/1009 (41%), Gaps = 179/1009 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L       +L + D+ P 
Sbjct: 29  KKLTDE-INTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDP- 86

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K L + +   + S P       G       P E R     YS P  V V ++  
Sbjct: 87  --EFYLKYLDIRVGHKSSSAP-------GTKEVILPPHECRLRDLTYSAPIYVDVEYTRG 137

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---- 210
            K       E+GR+P+ML+S +C L  +   Q+ +  E P + GGYF+V G EK++    
Sbjct: 138 RKIIMHKDLEIGRMPVMLRSNKCILDGINDKQMAKFDECPLDPGGYFVVNGTEKVILVQE 197

Query: 211 -----RLLI-----------------NNRRNHPIAIKRN--AWKNRGLLFSDLGVYIRSV 246
                R+++                 + R++    I +N   +     +  D+ + I   
Sbjct: 198 QLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIVLK 257

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
               ++   +L  V     ++     + + ++   ++   E + TQ  +  + G+  K  
Sbjct: 258 AAGITSDLEILQLVCGSDPQY-----QDLFVVNFEEAAKLE-VFTQQQALNYVGKRVKTI 311

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
            +     L+ ++     +   ++ H+      + +K L ++ M  ++   +     +D  
Sbjct: 312 RRAGAAKLSVLQEGIEAIATTVIAHITVADLQFREKALYIATMARRVVMTMHNPKMVDDR 371

Query: 363 DSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
           D +  + +   G L    +  L KK  S   A + +  +    R S  ++ ++  + + N
Sbjct: 372 DYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANI-DKILKKPSRTSEFDALLSINIHSNN 430

Query: 419 VSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
           ++ G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S 
Sbjct: 431 ITMGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSG 487

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGML 524
           PR L+   +G +C   TP+G  CGL+ +L     I+   E  P + L  +      LG+ 
Sbjct: 488 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEAPIRKLCYVLGCENILGID 547

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
             T   Q        + L+G ++G    +  +  V   R L+  G KI + + I Y    
Sbjct: 548 SATLHSQG----NFGIYLNGTLIG--TSRFPSKFVTDFRRLRRTG-KISEFVSI-YTNTH 599

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMN--------------------------LAAGNIEWI 618
           +        +++ T  GR+ RP++                           L+ G +E++
Sbjct: 600 QTA------VHIATDGGRICRPLIIVKNNEPMVKAEHLLKLRQGEWAFDDFLSHGLVEYL 653

Query: 619 GTFEQVFMDICITMKEAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
              E+    I +  K+  P    TH E+     L  +A LIP P  NQSPRN YQC MGK
Sbjct: 654 DVNEENDSLIALYEKDLDPSQPVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGK 713

Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
           Q +G    N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD+
Sbjct: 714 QAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 773

Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
           EDA++LNKSS +RGF    + +   I+L+   N+  T+ + SG+        IF      
Sbjct: 774 EDALVLNKSSIDRGFGRCQVVRKNTIQLKRYPNH--TKDIVSGMRVDEDGEPIF------ 825

Query: 798 QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------------NERDP 844
                                 +KA    LGPDGL  +GA++             N  + 
Sbjct: 826 ---------------------PHKA----LGPDGLGEIGARVENGQVYANKFVPTNAGES 860

Query: 845 MYSYWKE----SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT 900
           +  + ++      +R     Y G E   V+ V MS    +   +      +  R  R P 
Sbjct: 861 VLGHNEQMAGAESHREAAAYYKGPEPSYVDQVMMSVSDNDQALIK-----VLLRQTRRPE 915

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +GDKF+SR GQKG+C +    EDLPF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 916 LGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVG 964



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E G++Y G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 998  ILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1057

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1058 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1100

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1101 DVCNKCGLMGY 1111


>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
 gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
          Length = 1148

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 249/972 (25%), Positives = 410/972 (42%), Gaps = 173/972 (17%)

Query: 72  HIASFDFMLDEGLDLAVED----IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           H+ SF++ +D  L   ++     ++ ++ E Y K + + I K + S  K    P      
Sbjct: 63  HLDSFNYFVDIDLKKIIKANQTILSDVDPEFYLKYVDIRIGKKSTSSTKDYLTP------ 116

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
              P E R     YS P  V + ++           E+GR+PIML+S +C L     A++
Sbjct: 117 ---PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCTLYGCDEAEM 173

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVYIRS 245
            +  E P + GGYFIV G EK++ +     +N  I     A + +G++ + +    + R 
Sbjct: 174 AKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTHERK 230

Query: 246 VKRDESATNNVLHFVTNG-----------SARFMFSHRKSMCLLGMMQSLHEE------- 287
            K      N+ ++   N             A  + S  + M L+    S +++       
Sbjct: 231 SKTYVVTKNDKIYLKHNSISEEIPIVIVLKACGVVSELEIMQLVCGNDSSYQDIFAVNIE 290

Query: 288 -----GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWD 337
                 I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     ++ +
Sbjct: 291 EASKFNIYTQQQALEYIGAKVKTMRRQKLTVLQEGIE----AIATTVIAHLTVEALNFRE 346

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KSGTS 389
           K L ++ MT ++   +     +D  D +  + +   G L    +  L KK     K+   
Sbjct: 347 KALYMAMMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKASID 406

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMAE 440
            VLK+ +     RA   ++ ++  + + N+++G N  +           M+ +G   +  
Sbjct: 407 KVLKKPN-----RAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAG---VTH 458

Query: 441 NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
            ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L  
Sbjct: 459 VLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLAL 518

Query: 499 NCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
              I+   E  P K L  +      LG+  +  +  +       V L+G ++G    +  
Sbjct: 519 MTHITTDDEEEPIKKLCYV------LGVEDINLIDSASLHLNYSVFLNGTLIGSA--RFP 570

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN- 614
              V   R L+    K+   + I +    +K       +++ T  GR+ RP++ +  G  
Sbjct: 571 RKFVSHFRALR-RSCKVSAFISI-HTNSEQKA------VHIATDGGRICRPLIIVTNGES 622

Query: 615 -------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
                                    +E++   E+    I +  K+    +T H E+    
Sbjct: 623 HVKAHHLKRLLEGELVFDDFLKLGLVEYLDVNEENDSFIALYEKDIDQAVT-HLEIEPFT 681

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +  
Sbjct: 682 VLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTK 741

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + +D D  P G NA VAV+SY+GYD+EDA++LNK+S +RGF      +     L+   
Sbjct: 742 TIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCETRRKTTTVLKRYP 801

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
           N+  T+ +  G+                 R+       WQ K               LGP
Sbjct: 802 NH--TQDIIGGM-----------------RVDEKGEPIWQHK--------------ALGP 828

Query: 830 DGLVYVGAKL-------NERDPMYSY-----WKESENRYVTCRYSGKEEMCVEVVRMSSG 877
           DGL  VG KL       N+  P  S        ++  R     Y   E   ++ V MS  
Sbjct: 829 DGLGEVGMKLDSGQIYINKSVPTNSTDAFNGAAQASYRETPVIYRAPEPSHIDQVMMSVS 888

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             +   +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+VPDI+ 
Sbjct: 889 DNDQALIK-----VLLRQHRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGVVPDIIM 943

Query: 938 NPHGFPSRMTIG 949
           NPHGFPSRMT+G
Sbjct: 944 NPHGFPSRMTVG 955



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 989  ILVEKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1048

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1049 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1091

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1092 DVCAKCGLMGY 1102


>gi|183232813|ref|XP_654890.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
           [Entamoeba histolytica HM-1:IMSS]
 gi|169801863|gb|EAL49502.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1122

 Score =  243 bits (619), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 256/974 (26%), Positives = 416/974 (42%), Gaps = 173/974 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFE----IYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           HI SF++ +DE +   V+    I  +     Y K L + +          P   V     
Sbjct: 40  HIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKV--------DTPCVEVDYKKE 91

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPA 185
              P E R     Y+ P    + ++ D K    F K V  G +PIML+SK C L N T  
Sbjct: 92  SITPQECRLRDISYTAPILANIQYTRDNK---IFRKTVTIGYMPIMLQSKHCVLYNNTFE 148

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV---------RLLINN-----------RRNHPIAIK 225
           + I  GE P + GGYFIV G E+++         R+LI                H +  +
Sbjct: 149 EFIRHGECPMDPGGYFIVKGVERVILSQEQMSKNRILIETTTQGFLSASVTSATHEVKSR 208

Query: 226 RNAWKNRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFS---HRKSM 275
              +  +G L+        DL + I        +    L FV N     M +     K+ 
Sbjct: 209 TVVYLKKGKLYLKHNSLTEDLPIMIVIKAMGMESDMEFLQFVGNHYTSKMINSIEECKAK 268

Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-- 333
            +L   ++L   G H     K++ GQ      +  +    ++E    +L N +LPH++  
Sbjct: 269 DVLNQREALRYIGNHL----KIYTGQ------KGYISKRPKIEEARDVLANLVLPHIEVN 318

Query: 334 --DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---- 383
             ++  K + ++ M   +    +   +LD +D    + +   G L    +  L K+    
Sbjct: 319 RYNFKTKIIYIALMVNWILKADE-TGELDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTD 377

Query: 384 -EKSGTSAVLKES-----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
            + +    + K+S     DI        I   + + L+TGN    + +    M  +G   
Sbjct: 378 LQNAANKGLTKKSRSETFDIIKCISPHRITQGLIHSLSTGNWVLKRFN----MDRAG--- 430

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ Y+S    + R  S+F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 431 ITQVLSRLSYISALGMMTRLNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKN 490

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
            +    ++E         I ++L +LG+    L    +     + +V L+G+++G  + Q
Sbjct: 491 FSL---LTEVTTDSNDEAIVTMLFNLGVEDANLISGDEVNAPSSYLVFLNGQLLG--IHQ 545

Query: 554 IATSLVPKLRMLKI---VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-- 608
                + + R+L+    +G+K+  SL +  ++R          + + +  GR+ RP++  
Sbjct: 546 NPIHFLKQCRLLRRHGRLGKKV--SLHLNEMQR---------SINISSDGGRVCRPLIVV 594

Query: 609 ------------------------NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
                                    L  G IE++   E+    I I   E     TTH E
Sbjct: 595 ENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAINENEINEH-TTHLE 653

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +     L  +A LIP P  NQSPRN YQC MGKQ +GT   N   +    LY L  P  P
Sbjct: 654 IDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIGTIGYNQFKRVDTLLYLLYYPQIP 713

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             +    D ++ D  P G NA+VAV+SY+GYD+EDA ILNK+S +RG+    +++     
Sbjct: 714 MVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDASILNKASIDRGYGRCFVYRKAECV 773

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           ++  Y     + +    D                  R +   K+++ D+ G       L 
Sbjct: 774 IKK-YKNGACDRVVCPTDEE----------------REL--PKYKSLDFDGVCSPGSILN 814

Query: 825 DKLGPDGLVYVGAKLNERDPMYSY-------WKESENRYVTCRYSGKEEMCVEVVRMSSG 877
                 G +Y    LN++ P+ +         K+ E R     Y G     V+ V ++S 
Sbjct: 815 -----PGSIY----LNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLITSN 865

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             E     P    I  R  R P +GDKF+SR GQKG+  +    ED+PFT++G+ PD++ 
Sbjct: 866 EEE-----PLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTNTGICPDVIM 920

Query: 938 NPHGFPSRMTIGFL 951
           NPHGFPSRMT+G L
Sbjct: 921 NPHGFPSRMTVGKL 934



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E+GY+Y G E +YSG+ G  + A IF G V+YQ+L+HMV DK   +    +    + 
Sbjct: 966  ILIEAGYSYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQ 1025

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG + +G    ERD +  Y
Sbjct: 1026 PTEGRSRDGGLRLGEM--ERDCLIGY 1049


>gi|321261728|ref|XP_003195583.1| DNA-directed RNA polymerase [Cryptococcus gattii WM276]
 gi|317462057|gb|ADV23796.1| DNA-directed RNA polymerase, putative [Cryptococcus gattii WM276]
          Length = 1129

 Score =  242 bits (618), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 231/907 (25%), Positives = 374/907 (41%), Gaps = 153/907 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R T S YS P  V V +  + K       ++G +P+ML+S  C+L+    A+L   
Sbjct: 97  PMECRLTDSTYSAPIYVDVEYMGEEKRSKQRGVQIGMLPVMLRSDLCNLKGKNEAELARM 156

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
           GE P + GGYF+V G EK+            I ++    KNR L+  D    + +     
Sbjct: 157 GECPMDPGGYFVVKGTEKV------------ILVQEQLSKNRILVMKDKKDEVMAEVTSS 204

Query: 251 SATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHT---------------QHDS 295
           +    V  +V + + R    H      + ++ +L   G+                 Q   
Sbjct: 205 THDRVVKTYVVSKANRLYLRHNSFKEFIPIVIALKAMGLTADKEILQLICGSDERYQEAF 264

Query: 296 KVFFGQIFKEK-------LQY---------------DLRHLNEVEICDYMLTNCILPHLD 333
            V   +  KEK       L++                 + L   +I    L   +L H+ 
Sbjct: 265 GVSLEEAAKEKTFTRRQALEWIGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVP 324

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----- 384
               ++  K + L+ MT ++   +     +D  D +  + +   G L   L +       
Sbjct: 325 VRNMNFRPKCIYLATMTRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFN 384

Query: 385 ---KSGTSAVLKESDIYAAFRASS--------IESAMTNFLATGNVSAGKNSTLQLMQAS 433
              K     +L++ +    F A +        I  A    ++TGN S  +     + +A 
Sbjct: 385 SELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKR---FHVERAG 441

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
               +   ++R+ +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 442 ----VTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACG 497

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           L+ +L     I+  +P   L ++ + ++ +  + L    +       MV ++G ++G  +
Sbjct: 498 LVKNLALMTHITTDVPEAPLVKM-AFMLGVEDISLVTGNELYRPGVHMVQVNGTLIG--V 554

Query: 552 DQIATSLVPKLRMLKIVGEK-------IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
             +A   V + R L+  G         I    +I+Y+   + G    P + +  G  R+ 
Sbjct: 555 TNMAKKFVRQFRKLRRAGRMSEFVSIFINHHHKIIYIAS-DGGRICRPMIIVEKGRSRVT 613

Query: 605 RPVMNL------------AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLS 652
              + L             AG +E++   E+    I     E   G TTH E+     L 
Sbjct: 614 TEHVRLLKEGKVTFDHFLRAGLVEYLDVNEENDAFIACYENEIEEG-TTHLEIEPFTILG 672

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
            +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    +
Sbjct: 673 AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIE 732

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
            +  +  P G NA VAV+SY+GYD+EDA+ILN++S +RGF    + K +   + + +N  
Sbjct: 733 LIGYNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKVTTPMRTFHNGS 792

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
              T Y                           D     D +          DK   DG+
Sbjct: 793 HERTAY--------------------------PDPPPRPDAY-------TFVDK--ADGM 817

Query: 833 VYVGAKLNERDPMYSYWKESENRY----------VTCRYSGKEEMCVEVVRMSSGFTEGG 882
              GA +N+ D M       + R           +   +   E + V+ V ++ G  E G
Sbjct: 818 TAPGATINQYDVMIHRETPIDTRGGGADTQLYKPMPVTHKTPEPILVDKVMLTEG--EDG 875

Query: 883 SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
           ++      I  R  R P +GDKF+SR GQKG+C +  P  D+PF D G+VPDI+ NPHGF
Sbjct: 876 ALIK----ILTRQTRRPELGDKFSSRHGQKGVCGLIVPQADMPFNDQGIVPDIIMNPHGF 931

Query: 943 PSRMTIG 949
           PSRMT+G
Sbjct: 932 PSRMTVG 938



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             +I  K  Y   F    +     I +++G++Y G + + SG+ G  M+A ++FG ++YQ+
Sbjct: 949  GVIAGKLQYGTAFGGSKVVDMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQK 1008

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            L+HMV DK   +    R    +   +    DG + +G    ERD +  Y           
Sbjct: 1009 LKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEM--ERDCLIGY----------- 1055

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
               G  ++ +E + +SS   E   V  +C  +GY
Sbjct: 1056 ---GATQLLLERLMISSDAFE-TQVCESCGMLGY 1085


>gi|50310217|ref|XP_455128.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644264|emb|CAG97835.1| KLLA0F01078p [Kluyveromyces lactis]
          Length = 1142

 Score =  242 bits (617), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 261/1005 (25%), Positives = 418/1005 (41%), Gaps = 186/1005 (18%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L       ++ + D+ P 
Sbjct: 29  KKLTDE-INTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDP- 86

Query: 95  EFEIYGKTLKLNIV-----KAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTV 149
             E Y K + + +        AI  P               P E R     YS P  V +
Sbjct: 87  --EFYLKYIDIRVGYKHNGNKAIMTP---------------PHECRLRDMTYSTPIFVDI 129

Query: 150 AWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
            ++           E+GR+PIML+S +C L       + +  E P + GGYFIV G EK+
Sbjct: 130 EYTRGRSIVLHRDVEIGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKV 189

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR--- 266
           + L+      + I ++ +  KN          + R  K      N+ ++   N  A    
Sbjct: 190 I-LVQEQLSKNRIIVEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSIAEEVP 248

Query: 267 --FMFSHRKSMCLLGMMQ---------------SLHEEG---IHTQHDSKVFFGQIFKEK 306
              +      +  L +MQ               +L E     I+TQ  +  F G   K  
Sbjct: 249 IVVVLKACGVVSDLEIMQLVCGNDSSYQDIFAVNLEEAAELKIYTQQQALEFIGTKVKTV 308

Query: 307 LQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            +  L  L E +E     +   ++ HL     D+ +K L ++ MT ++   +     +D 
Sbjct: 309 RRQKLSILQEGIE----AIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDD 364

Query: 362 EDSIMLQEIMTGGSL----YLQLLKKE----KSGTSAVLKE---SDIYAAF-----RASS 405
            D +  + +   G L    +  L KK     K+    VLK+   +++Y A       +++
Sbjct: 365 RDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVHSNN 424

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMR 464
           I + M   ++TGN S  +      M+ +G   +   ++R+ Y+S    + R  S F++ R
Sbjct: 425 ITTGMNRAISTGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISSQFEKSR 477

Query: 465 S-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGM 523
             S PR L+   +G +C   TP+G  CGL+ +L     I+     + + +I  +   LG+
Sbjct: 478 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYL---LGV 534

Query: 524 LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKR 583
             ++ +  +       V L+G I+G    +  T  V + R L+  G         +Y   
Sbjct: 535 EDISLIDSASIHLNYGVYLNGTIIGTT--RFPTKFVSQFRCLRRTGR--ASEFISIYTNT 590

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEW 617
            +K       +++ T  GR+ RP++ ++ G                           +E+
Sbjct: 591 HQK------AVHIATDGGRICRPLIIVSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEY 644

Query: 618 IGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
           +   E+    I +  K+    I TH E+     L  +A LIP P  NQSPRN YQC MGK
Sbjct: 645 LDVNEENDSFIALYEKDLSENI-THLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGK 703

Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
           Q +G    N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD+
Sbjct: 704 QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 763

Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
           EDA++LNK+S +RGF      +     L+   N+  T+ +  G+                
Sbjct: 764 EDALVLNKASIDRGFGRCETRRKNTTVLKRYPNH--TQDIIGGM---------------- 805

Query: 798 QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------------NERDP 844
            R+       WQ +               LGPDGL  VG K+             N  D 
Sbjct: 806 -RVDENGEPIWQHQ--------------ALGPDGLGEVGMKVESGQIYVNKSVPTNASDS 850

Query: 845 MYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
           + +   +++ +     Y   E   ++ V MS    +   +      +  R  R P +GDK
Sbjct: 851 ILT-QTQAQYKETPVVYRAPEPSHIDQVMMSVSDNDQALIK-----VLLRQNRRPELGDK 904

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           F+SR GQKG+C +    EDLPF D G+VPDI+ NPHGFPSRMT+G
Sbjct: 905 FSSRHGQKGVCGIIVKQEDLPFNDQGVVPDIIMNPHGFPSRMTVG 949



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 983  ILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1042

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1043 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFE-V 1085

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1086 DVCEKCGLMGY 1096


>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
          Length = 1158

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 248/917 (27%), Positives = 401/917 (43%), Gaps = 149/917 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P + R     Y+ P  V+V +    K        +GR+PIML+S RC L   + A L + 
Sbjct: 98  PHQCRLRDRTYAAPVYVSVRYRRGNKIVTNNKVLIGRIPIMLRSSRCVLAGKSEAALAKL 157

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLI--NNRRNHPIAIKRNAW--KNRGLLFS 237
            E P + GGYFIV G EK+V         R++I  + +RN   +I  +    K+R  +F 
Sbjct: 158 KECPYDPGGYFIVRGVEKVVLIHEQLSKNRVIIEEDGKRNVCASITSSTHERKSRTNIFL 217

Query: 238 DLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG-------MMQSLHEEGI 289
           + G VY++S   +   ++  +  V  G    + S ++ + L+G        M +  EE  
Sbjct: 218 NKGRVYLKS---NSFGSDIPIVIVFRGMG--VESDQEIVSLVGSEPDICDAMSASFEEA- 271

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHL---------------------NEVEICDYMLTNCI 328
               D KVF  Q   E +   +  L                     N V+     L N +
Sbjct: 272 ---SDLKVFTQQQALEYIGSKMNTLTKIGAMGGRNRGGAGRPQQDRNLVDAARSALANLV 328

Query: 329 LPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE 384
           L H+     ++  K + ++H+  ++    +   +LD +D    + +   G L L LL ++
Sbjct: 329 LNHVPCENFNFRLKSIYVAHIVRRILFTDKDRTRLDDKDYYGNKRLELAGQL-LSLLFED 387

Query: 385 ---------KSGTSAVLKES------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL 429
                    K     VL +       DI    R  +I     + L+TGN +  +      
Sbjct: 388 LFKRFNSDLKRQADMVLSKPNRASVFDIIKCVRTDTITQGFYHALSTGNWTLKRFR---- 443

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDG 487
           M  +G   +   ++R+ YMS    + R  S F++ R  S PR L+   WG +CP  TP+G
Sbjct: 444 MDRAG---VTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEG 500

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA-----LMVML 542
             CGL+ +L   C ++     +    I  +   LG   +T V  S  E+       +VML
Sbjct: 501 EACGLVKNLALLCHVTS---DEEPGPIKRLCFDLG---VTDVSLSSGEEINHASNYLVML 554

Query: 543 DGRIVGYILDQIA-TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           +G I+G  ++  A  + + ++R   ++GE +  S+ I  ++R          +Y+ +  G
Sbjct: 555 NGVIIGTHVNPRAFVTRLRRIRRAGLIGEFV--SVMIHDVQRV---------VYIASDGG 603

Query: 602 RMLRPVMNL----------------------------AAGNIEWIGTFEQVFMDICITMK 633
           R+ RP++ +                              G +E++   E+   +  +T+ 
Sbjct: 604 RVCRPLLLIDPVTHRTRLTQRHLDELRSGVRDLSSLIVEGCVEYVDVNEE--NNCLVTLH 661

Query: 634 EAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
           E+  G  TTH E+     L  ++ LIP P  NQSPRN YQC MGKQ +GT  +N   +  
Sbjct: 662 ESEIGDRTTHLEIDPVTILGVVSGLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERID 721

Query: 693 GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
             LY +  P  P  +    D ++ D  P G NAIVAV+SY+GYD+EDA++LNK+S +RGF
Sbjct: 722 TLLYTMVYPQMPMVKTRVLDLVNFDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGF 781

Query: 753 AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
              C+    +  +   Y     + +    D   + A    G+  ++  ++   D      
Sbjct: 782 GR-CMVFKKYQTMIKKYANGSYDRIVGPPDFDSLAAPGGAGM-GFRNAKYSSLDADGISR 839

Query: 813 YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVV 872
             G       + +K  P         ++ RDP+   +  S   Y      G     V+ V
Sbjct: 840 VGGIVQNGAIMINKEQP---TQFNDSVDGRDPLDVTYSPSPTTY-----KGPIPAYVDKV 891

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            ++S       V      +  R  R P +GDKF+SR GQKG+C      ED+PF D G+ 
Sbjct: 892 LLTSSEANHFLVK-----VLIRQTRRPEIGDKFSSRHGQKGVCGTIRQQEDMPFNDQGIC 946

Query: 933 PDIVFNPHGFPSRMTIG 949
           PD++ NPHGFPSRMT+G
Sbjct: 947 PDLIMNPHGFPSRMTVG 963



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++G+NY G + + SG+ G  ++  IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1004 VKNGFNYAGKDYLTSGITGEPIECYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPT 1063

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1064 EGRSRDGGLRLGEM--ERDCLIGY 1085


>gi|50292925|ref|XP_448895.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528208|emb|CAG61865.1| unnamed protein product [Candida glabrata]
          Length = 1133

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 257/999 (25%), Positives = 417/999 (41%), Gaps = 174/999 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L        L + D+ P 
Sbjct: 20  KKLTDE-VNTADDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDP- 77

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K + + + + + S  K    P         P E R     YS P  V + ++  
Sbjct: 78  --EFYLKYVDIRVGQRSGSPHKDQLVP---------PHECRLRDMTYSAPIYVDIEYTRG 126

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                    E+GR+PIML+S +C L       +    E P + GGYFIV G EK++ L+ 
Sbjct: 127 RNIIMHKNVEIGRMPIMLRSNKCILHGADEKMMARLSECPLDPGGYFIVNGTEKVI-LVQ 185

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNG----------- 263
                + I ++ +  K+          + R  K      N  ++   N            
Sbjct: 186 EQLSKNRIIVEADEKKDIVQASVTSSTHERKSKTYVVTKNGKIYLKHNSIAEEVPIVIVL 245

Query: 264 SARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQYDL 311
            A  + S  + M L+    S +++             I TQ  +  + G   K   +  L
Sbjct: 246 KAAGIISDLEIMQLVCGNDSSYQDIFSVNLEEAAKLNICTQQQALEYIGAKVKTMRRQKL 305

Query: 312 RHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
             L E +E     +   I+ HL     D+ +K L ++ MT ++   +     +D  D + 
Sbjct: 306 TILQEGIE----AIATTIIAHLTVEALDFREKALYIATMTRRVVMAMHNPKMVDDRDYVG 361

Query: 367 LQEIMTGGSL----YLQLLKKE----KSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
            + +   G L    +  L KK     K     VLK+ +     RA   ++ ++  + + N
Sbjct: 362 NKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPN-----RAMEYDALLSINVHSNN 416

Query: 419 VSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
           +++G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S 
Sbjct: 417 ITSGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSG 473

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
           PR L+   +G +C   TP+G  CGL+ +L     I+     + + ++  V   LG+ P++
Sbjct: 474 PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIRKLCYV---LGVEPIS 530

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
            +  +       V L+G ++G    +  ++ V + R L+  G    K  E + +   +  
Sbjct: 531 LLDSASLHLNYGVYLNGTLIGTT--KFPSNFVSRFRFLRRTG----KVSEFISIYTNDH- 583

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEWIGTF 621
              +  +++ T  GR+ RP++ +  G                           +E++   
Sbjct: 584 ---HNAVHIATDGGRICRPLIIVKDGKSMVEAEHLKRLLSGELVFDDFLKLGLVEYLDVN 640

Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
           E+    I +  K+    I TH E+     L  +A LIP P  NQSPRN YQC MGKQ +G
Sbjct: 641 EENDSYIALYEKDITHDI-THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 699

Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
               N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD+EDA+
Sbjct: 700 AIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDAL 759

Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           +LNKSS +RGF      +     L+   N+  T+    G+                 R+ 
Sbjct: 760 VLNKSSIDRGFGRCETRRKTTTVLKKYPNH--TKDALCGM-----------------RVD 800

Query: 802 HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK-------LNERDPMYS----YWK 850
                 WQ               + LGPDGL  VG K       +N+  P+ S       
Sbjct: 801 ENGEAIWQ--------------HESLGPDGLGEVGLKIRSGQIYINKSVPVQSSDAMAVN 846

Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
           +++ R     Y   E   ++ V MS+   +   +      +  R  R P +GDKF+SR G
Sbjct: 847 QAQYRETPVIYRAPELSIIDQVMMSTSDNDQDLIK-----VLLRQNRRPELGDKFSSRHG 901

Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           QKG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 902 QKGVCGIIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVG 940



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 974  ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1033

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1034 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1076

Query: 883  SVTPNCAYIGY 893
             V  NC  +GY
Sbjct: 1077 DVCSNCGLMGY 1087


>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 1157

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 245/984 (24%), Positives = 405/984 (41%), Gaps = 180/984 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L        L + D+ P   + Y K L + +   + S P       G 
Sbjct: 57  HLDSFNYFVDTDLKKILKANSLVLSDVDP---DFYVKYLDIRVGHKSTSAP-------GT 106

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V V ++   K       E+GR+P+ML+S +C L  L  
Sbjct: 107 KEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIRHNDLEIGRMPVMLRSNKCMLDGLDE 166

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV---------RLLI-----------------NNRR 218
            Q+ +  E P + GGYF+V G EK++         R+++                 + R+
Sbjct: 167 RQMAQVDECPLDPGGYFVVNGTEKVILVQEQLSKNRIIVEADDKKGIVQASVTSSTHERK 226

Query: 219 NHPIAIKRNA--WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
           +    I +N   +     +  D+ + I       ++   +L  V   +      H + + 
Sbjct: 227 SKTYVITKNGKIYLKHNSIGEDVPIVIVLKAAGITSDLEILQLVCGSNP-----HYQDLF 281

Query: 277 LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD--- 333
           ++   ++   E + TQ  + ++ G+  K   +     L++++     +   I+ HL    
Sbjct: 282 VVNFEEAARLE-VFTQQQALLYLGKRVKTIRRAGAPKLSQLQEGIEAIATTIVAHLTVSN 340

Query: 334 -DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGT 388
             + +K   ++ M  ++   +     +D  D +  + +   G L    +  L KK  S  
Sbjct: 341 LQFKEKAFYMAMMARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDF 400

Query: 389 SAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMA 439
            A + +  +    R +  ++ ++  + + N++ G N  +           M+ +G   + 
Sbjct: 401 KANI-DKILKKPSRTTEFDALLSINIHSNNITMGLNRAISTGNWSLKRFKMERAG---VT 456

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
             ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L 
Sbjct: 457 HVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLA 516

Query: 498 TNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQI 554
               I+   E +P K L         LG+   T  +    +    V L+G ++G    + 
Sbjct: 517 LMTHITTDDEELPIKKLCIALGCESILGLDSSTLHV----DGNFGVFLNGTLIGAT--RF 570

Query: 555 ATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----- 609
               V   R L+  G K+   + I            +  ++L T  GR+ RP++      
Sbjct: 571 PVKFVNDFRHLRRAG-KVSAFISIYTNTH-------HQAVHLATDGGRICRPLIIVEKNK 622

Query: 610 ---------------------LAAGNIEWIGTFEQVFMDICITMKEAYPG-----ITTHR 643
                                L  G +E++   E+   D  I + E   G       TH 
Sbjct: 623 SKVQSEHLKKLLRGEWQFDDFLREGLVEYLDVNEE--NDSLIALYEKDIGSNANATVTHL 680

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 681 EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYFMVYPQQ 740

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  +    + ++ D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF    + +   +
Sbjct: 741 PMVKTKTIELINYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTV 800

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           +L+   N+  T+ + SG+        IF                                
Sbjct: 801 QLKKYPNH--TKDILSGMRVDENNEPIF-------------------------------P 827

Query: 824 EDKLGPDGLVYVGAKL-------NERDP-----------MYSYWKESENRYVTCRYSGKE 865
              LGPDGL  VG+++       N+  P           M    +   +R     Y G E
Sbjct: 828 HQALGPDGLGEVGSRIENGQVFANKFVPTNSGESTFAGGMQQQPQAESHREAAQYYKGPE 887

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              V+ V MS    +   V      +  R  R P +GDKF+SR GQKG+C +    EDLP
Sbjct: 888 PSYVDQVMMSVSDNDQALVK-----VLLRQTRRPELGDKFSSRHGQKGVCGIIVQHEDLP 942

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIG 949
           F D G+ PDI+ NPHGFPSRMT+G
Sbjct: 943 FNDDGISPDIIMNPHGFPSRMTVG 966



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +  G++Y G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1000 ILVSKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1059

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1060 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1102

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1103 DVCNKCGLMGY 1113


>gi|380493500|emb|CCF33834.1| DNA-directed RNA polymerase III subunit RPC2 [Colletotrichum
           higginsianum]
          Length = 1151

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 242/925 (26%), Positives = 384/925 (41%), Gaps = 168/925 (18%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N+  P E R     Y+ P  V +A+  D          +GR+P+MLKS  C L     A+
Sbjct: 100 NEVSPMECRLRDMTYAAPIMVDIAYIRDKSKIVRKNVPLGRLPVMLKSSICRLGGANNAE 159

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI--AIKRNAW--------------- 229
           +    E P + GGYFI+ G EK++ +     +N  I  A ++N+                
Sbjct: 160 MSRMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNSVITASVTSSTHERKSK 219

Query: 230 ------KNRGLLFSDL---GVYIRSVKRDESATNN--VLHFVTNGSARFMFSHRKSMCLL 278
                 K+R LL +++   G+ I  + +      +  ++  V   + ++          L
Sbjct: 220 TYVTLKKDRILLTANILVEGIPIVIILKALGGLTDYEIMQLVAGDNGKYQDE------FL 273

Query: 279 GMMQSLHEEGIHTQHDSKVFFG---QIFKEKLQYDLR-HLNEVEICDYMLTNCILPHLD- 333
              +   + G++TQ  +  + G   ++ K ++ +  +   N VE     L N I+ H+  
Sbjct: 274 VQFEEATKVGVYTQQQALEYIGARVKMGKSRVPFAAQVRRNHVEEALDALANLIIAHVPI 333

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLK 382
              D++ K + ++ MT ++    Q    +D  D +  + +   G         L+ Q   
Sbjct: 334 EGLDFYPKAVYVAFMTRRVLMAQQDPSLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFCG 393

Query: 383 KEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
             KS    VLK+ +      A ++ S   N +  G   A        +Q   + +   N+
Sbjct: 394 NVKSSIDKVLKKDNRAVPLDAVNMISNHANMIGQGINRA--------IQTGNWTVKRFNM 445

Query: 443 NR---------MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           NR         + Y+S    + R  S F++ R  S PR L+   WG +C   TP+G  CG
Sbjct: 446 NRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACG 505

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGY 549
           L+ +L     I+  +    + +    L   G+ P+      +   E + ++ ++G    +
Sbjct: 506 LVKNLALMTHITTNVEEAPVKRWVFTL-DAGVEPIRNFSGGEMHRETSYVIHING--TPF 562

Query: 550 ILDQIATSLVPKLRMLKIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP-- 606
            L +       K R ++  G   P  S+ I            +  +++ T  GR+ RP  
Sbjct: 563 ALTRYPKRFAGKFRTMRRRGWISPFVSIHI---------NNHFNAVHIATDEGRICRPYI 613

Query: 607 -VMN-----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
            V N                       L  G +E++   E+    + +  K+  P +TTH
Sbjct: 614 IVKNGKPKLKAEHLRLLQLGKATFDDFLTHGIVEYLDVNEENDTLVALYEKDVTP-LTTH 672

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P 
Sbjct: 673 MEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQ 732

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P         ++ D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+   
Sbjct: 733 RPMVISKTIQLVNYDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYT 792

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            EL+   N                              R  + D     D  GR   ++A
Sbjct: 793 AELQKYPNGR----------------------------RERIGDP--VNDENGRTTKHEA 822

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKE----------------SENRYVTCRYSGKEE 866
           L+D    DGL  VG K+N  + M    KE                SE R  +  Y   + 
Sbjct: 823 LDD----DGLAIVGYKVNSGEVMIK--KETPLDTGSTGIGMDRGPSEFRDSSISYRIADP 876

Query: 867 MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             ++ V +S    E   V      +  R  R P +GDKF+SR GQKG+  +    EDLPF
Sbjct: 877 AYIDKVMVSHTERETMVVK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPF 931

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           +D+GLVPDI+ NPHGFPSRMT+G L
Sbjct: 932 SDTGLVPDIIMNPHGFPSRMTVGKL 956



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 23/151 (15%)

Query: 750  RGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            + +  G  F+S  +E      ++ G+++ G +   SG+ G  ++A IF G ++YQRL+HM
Sbjct: 971  KDYGFGDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHM 1030

Query: 804  VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
            V DK  ++    R    +   +    DG + +G    ERD + +Y              G
Sbjct: 1031 VQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------G 1074

Query: 864  KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
              ++ +E + +SS  T+   +   C   GY+
Sbjct: 1075 ASQLLLERLMISSDGTQ-IDICQQCGLFGYK 1104


>gi|308497698|ref|XP_003111036.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
 gi|308242916|gb|EFO86868.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
          Length = 1154

 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 247/955 (25%), Positives = 403/955 (42%), Gaps = 198/955 (20%)

Query: 118 PAGPVGIHF--NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE--VGRVPIMLK 173
           P+   G++   +K  P E R     YS P +V + ++   +    F K+  +GR+PIML+
Sbjct: 87  PSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQR--VFKKDLIIGRMPIMLR 144

Query: 174 SKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRG 233
           S +C LR+L   +L    E P + GGYF+V G EK++ L+      + I + RN+ K   
Sbjct: 145 SSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVI-LIQEQLSKNRIMVGRNSSK--- 200

Query: 234 LLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK-------SMCLLGM------ 280
               +L   + S   +  +      +VT    ++   H +       S+    M      
Sbjct: 201 ----ELQCEVLSSTSERKSKT----YVTMKKGKYSVRHNQLTDDVPVSIIFKAMGVESDY 252

Query: 281 ----------------MQSLHE---EGIHTQHDSKVFFGQIFKEKLQYDLRHL------- 314
                            Q+L E    G++TQ  +  +     K +       L       
Sbjct: 253 DIVSTIGHEEKYVSAFAQTLEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSV 312

Query: 315 ----NEVEICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
                E E  D+ L+N ++ H+     ++  K + L  MT +L     G  +LD  D   
Sbjct: 313 LTPPKEHEAVDF-LSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENELDDRDFYG 371

Query: 367 LQEIMTGGSLYLQLLKK---------EKSGTSAVLKES----DIYAAFRASSIESAMTNF 413
            + +   GSL   L +          ++   +A++K      DI    R   I + + N 
Sbjct: 372 NKRLELAGSLLALLFEDVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNA 431

Query: 414 LATGN--VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPR 469
           ++TGN  +   +   L + Q          ++R+ Y+S    + R  S F++ R  S PR
Sbjct: 432 MSTGNWIIKRFRMERLGVTQV---------LSRLSYISALGMMTRINSTFEKTRKVSGPR 482

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV 529
            L+   WG +CP  TP+G  CGL+ +L     I+     K + ++   L++ G+  L  V
Sbjct: 483 SLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRL---LLNSGVEDLHNV 539

Query: 530 IQS---IPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
             S    PE  L + L+G ++G  +D +     V  LR   ++ E +  S  I       
Sbjct: 540 HFSHVNKPENTL-IFLNGVLIGTAVDPERVVRAVRDLRRSGLLSEFVSVSRSITNR---- 594

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NIEWIGTFEQVFMD----------- 627
                   +++ +  GR+ RP + +  G       +++ +   +++F D           
Sbjct: 595 -------SVFISSDGGRLCRPYIIVKNGKPMLTQDHVQQLKEGKRIFEDFVDDGIVEYLD 647

Query: 628 --------ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
                   I +  KE  P  TTH E+     L   A LIP P  NQSPRN YQC MGKQ 
Sbjct: 648 VNEMNDALIAVYEKEIGPE-TTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQA 706

Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
           MGT   N + +    +Y L  P  P  +    +  + +  P G N I+AV+SY+GYD+ED
Sbjct: 707 MGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIED 766

Query: 740 AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
           A++LNK+S +RG                    YG   +Y  V G++ +    +    + R
Sbjct: 767 ALVLNKASLDRG--------------------YGRCLVYKHVKGTVRK----YPNQTFDR 802

Query: 800 LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------NERDPMYS----- 847
           L     D         R P +K     L  +G+V+ GA++       N+  P+ S     
Sbjct: 803 LLGPALDPNT------RLPISK--HKNLDQEGIVFAGARILPKQTIINKHMPVVSGESGP 854

Query: 848 -----------YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
                        ++ + + V+  Y        E V ++    E   +      +  R  
Sbjct: 855 GPSASANTIGIAGRQVDYKDVSISYKTPTPSYAERVLLTYNEDEAHLIK-----VLLRQT 909

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R P +GDKF+SR GQKG+C +    ED+PF D G+VPD++ NPHG+PSRMT+G L
Sbjct: 910 RRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKL 964



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 1001 GYNYMGKDMLTSGITGQSLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGR 1060

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              +G + +G    ERD + +Y
Sbjct: 1061 SREGGLRLGEM--ERDCLIAY 1079


>gi|146088594|ref|XP_001466094.1| putative RNA polymerase I second largest subunit [Leishmania infantum
            JPCM5]
 gi|134070196|emb|CAM68531.1| putative RNA polymerase I second largest subunit [Leishmania infantum
            JPCM5]
          Length = 1616

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 174/589 (29%), Positives = 282/589 (47%), Gaps = 68/589 (11%)

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
            +   L TGN++  +       Q SG+V+MAE++N  R+    R VHRG    +MRSSE R
Sbjct: 831  LARLLVTGNINLNREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVR 890

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL-----GML 524
            +   +A+GFIC V +PDG  CG+LNHL+ +   S    + + AQ+  ++           
Sbjct: 891  KYPCEAYGFICMVQSPDGEDCGVLNHLSLSTISSNSPDAAMTAQLREIVCKAVPGVRSRA 950

Query: 525  PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK------------IVGEKI 572
              + V+  + E  + V ++G ++GY+    A     +LR  K            IV  K 
Sbjct: 951  THSTVVDQLCE-TVPVWMEGELLGYLSPADAVEAAARLRQRKALTLRSQVHVTGIVRRKD 1009

Query: 573  PK---SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG----------NIEWIG 619
                 +LE+VY+    K      GLY+F   GR++RPV  L +            + +IG
Sbjct: 1010 ASPLHTLEVVYVAPKNKDPA---GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIG 1066

Query: 620  TFEQVFMDICITMKEAYPGITT------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            T+EQ ++DI     +    +        + E + T+ +S  +  IP  + N SPRN++QC
Sbjct: 1067 TWEQSWLDIAAVPSDPLDAVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQC 1126

Query: 674  QMGKQTMGT--PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
             + KQ+ GT    L WR +   KL+R   P     R +  D   +D+  +G NA++A+++
Sbjct: 1127 GLSKQSSGTQLQALAWRKE--AKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILA 1184

Query: 732  YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
            YTGYDM+DA+I+N ++ +RG     +  +  +      +      ++  +   +   + F
Sbjct: 1185 YTGYDMDDAVIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNL---LSTGERF 1241

Query: 792  FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER-DP-----M 845
               +    L    ++       F RD     L D    +  VY  AK  ER DP     +
Sbjct: 1242 TAELEANGLPPKRANASLDAFSFDRDHKYPGLRD----NNDVYCCAKRVERVDPFTNKSV 1297

Query: 846  YSYWKESENRYVTCRY--SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
            Y Y +    ++   R+   G++    +V+ +     +     P    + +RI R PTVGD
Sbjct: 1298 YEYTRHHATKW---RHFDKGEDAWVQQVIPLVYSGPD-----PTSVLMIFRIPRPPTVGD 1349

Query: 904  KFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            KF+SR GQKG   +   + +LPF T SG+ PD++ NPH FPSRMT+G +
Sbjct: 1350 KFSSRHGQKGTLPLHIRSHNLPFATASGITPDVIINPHAFPSRMTVGMV 1398



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYN YG E +  G+ G  M+A +F G+  YQRLRHMVSDKWQ +
Sbjct: 1437 VKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQAR 1483



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 169 PIMLKSKRCHLRNLTPAQLIERG-EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M+K  RC LRN+       R  E   E GGYFI+ G E+++R L+  R N PI I R 
Sbjct: 474 PEMVKGARCALRNVDARLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIYRE 533

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            +  +G  FS   V IR  +       N  ++ T G   F F+ +
Sbjct: 534 KFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSFARK 578


>gi|398016410|ref|XP_003861393.1| RNA polymerase I second largest subunit, putative [Leishmania
            donovani]
 gi|322499619|emb|CBZ34693.1| RNA polymerase I second largest subunit, putative [Leishmania
            donovani]
          Length = 1616

 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 174/589 (29%), Positives = 282/589 (47%), Gaps = 68/589 (11%)

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
            +   L TGN++  +       Q SG+V+MAE++N  R+    R VHRG    +MRSSE R
Sbjct: 831  LARLLVTGNINLNREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVR 890

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL-----GML 524
            +   +A+GFIC V +PDG  CG+LNHL+ +   S    + + AQ+  ++           
Sbjct: 891  KYPCEAYGFICMVQSPDGEDCGVLNHLSLSTISSNSPDAAMTAQLREIVCKAVPGVRSRA 950

Query: 525  PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK------------IVGEKI 572
              + V+  + E  + V ++G ++GY+    A     +LR  K            IV  K 
Sbjct: 951  THSTVVDQLCE-TVPVWMEGELLGYLSPADAVEAAARLRQRKALTLRSQVHVTGIVRRKD 1009

Query: 573  PK---SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG----------NIEWIG 619
                 +LE+VY+    K      GLY+F   GR++RPV  L +            + +IG
Sbjct: 1010 ASPLHTLEVVYVAPKNKDPA---GLYVFFDCGRLMRPVQRLESSVRKDATHLPFPLVFIG 1066

Query: 620  TFEQVFMDICITMKEAYPGITT------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            T+EQ ++DI     +    +        + E + T+ +S  +  IP  + N SPRN++QC
Sbjct: 1067 TWEQSWLDIAAVPSDPLDAVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQC 1126

Query: 674  QMGKQTMGT--PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
             + KQ+ GT    L WR +   KL+R   P     R +  D   +D+  +G NA++A+++
Sbjct: 1127 GLSKQSSGTQLQALAWRKE--AKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILA 1184

Query: 732  YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
            YTGYDM+DA+I+N ++ +RG     +  +  +      +      ++  +   +   + F
Sbjct: 1185 YTGYDMDDAVIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNL---LSTGERF 1241

Query: 792  FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER-DP-----M 845
               +    L    ++       F RD     L D    +  VY  AK  ER DP     +
Sbjct: 1242 TAELEANGLPPKRANASLDAFSFDRDHKYPGLRD----NNDVYCCAKRVERVDPFTNKSV 1297

Query: 846  YSYWKESENRYVTCRY--SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
            Y Y +    ++   R+   G++    +V+ +     +     P    + +RI R PTVGD
Sbjct: 1298 YEYTRHHATKW---RHFDKGEDAWVQQVIPLVYSGPD-----PTSVLMIFRIPRPPTVGD 1349

Query: 904  KFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            KF+SR GQKG   +   + +LPF T SG+ PD++ NPH FPSRMT+G +
Sbjct: 1350 KFSSRHGQKGTLPLHIRSHNLPFATASGITPDVIINPHAFPSRMTVGMV 1398



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYN YG E +  G+ G  M+A +F G+  YQRLRHMVSDKWQ +
Sbjct: 1437 VKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQAR 1483



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 169 PIMLKSKRCHLRNLTPAQLIERG-EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M+K  RC LRN+       R  E   E GGYFI+ G E+++R L+  R N PI I R 
Sbjct: 474 PEMVKGARCALRNVDARLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIYRE 533

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            +  +G  FS   V IR  +       N  ++ T G   F F+ +
Sbjct: 534 KFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSFARK 578


>gi|301110510|ref|XP_002904335.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
           [Phytophthora infestans T30-4]
 gi|262096461|gb|EEY54513.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
           [Phytophthora infestans T30-4]
          Length = 1166

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 244/916 (26%), Positives = 398/916 (43%), Gaps = 147/916 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P + R     Y+ P  V+V +    K        +GR+PIML+S RC L   + A L + 
Sbjct: 106 PHQCRLRDRTYAAPVYVSVRYRRGNKIVTNNKVLIGRIPIMLRSSRCVLAGKSEAALAKL 165

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNH----PIAIKRNAWKNRGLLFS 237
            E P + GGYFIV G EK+V         R++I     H     I    +  K+R  +F 
Sbjct: 166 KECPYDPGGYFIVRGVEKVVLIHEQLSKNRVIIEEDGKHNVCASITSSTHERKSRTNIFL 225

Query: 238 DLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE---GIHTQH 293
           + G VY++S   +   ++  +  V  G    + S ++ + L+G    + +          
Sbjct: 226 NKGRVYLKS---NSFGSDIPIVIVFRGMG--VESDQEIVSLVGSESDICDALSASFEEAS 280

Query: 294 DSKVFFGQIFKEKLQYDLRHL---------------------NEVEICDYMLTNCILPHL 332
           D KVF  Q   E +   +  L                     N V+     L N +L H+
Sbjct: 281 DLKVFTQQQALEYIGSKMNALTKIGAMGGRHRGGAGRPQNDRNLVDAARSALANLVLNHV 340

Query: 333 D----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---- 384
                ++  K + ++H+  ++    +   +LD +D    + +   G L L LL ++    
Sbjct: 341 PCDNFNFRLKSIYVAHIVRRILFTDKDRTRLDDKDYYGNKRLELAGQL-LSLLFEDLFKR 399

Query: 385 -----KSGTSAVLKES------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
                K     VL +       DI    R  +I     + L+TGN +  +      M  +
Sbjct: 400 FNSDLKRQADMVLSKPNRASVFDILKCVRTDTITQGFYHALSTGNWTLKRFR----MDRA 455

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   +   ++R+ YMS    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 456 G---VTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACG 512

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA-----LMVMLDGRI 546
           L+ +L   C ++     +  A I  +   LG   +T V  S  E+       +VML+G I
Sbjct: 513 LVKNLALLCHVTS---DEEPAPIKRLCFDLG---VTDVSLSSGEEINHASNYLVMLNGVI 566

Query: 547 VGYILDQIA-TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
           +G  ++  A  + + ++R   ++GE +  S+ I  ++R          +Y+ +  GR+ R
Sbjct: 567 IGTHVNPRAFVTRLRRIRRAGLIGEFV--SVMIHDVQRV---------VYIASDGGRVCR 615

Query: 606 PVMNL----------------------------AAGNIEWIGTFEQVFMDICITMKEAYP 637
           P++ +                              G +E++   E+   +  + + E+  
Sbjct: 616 PLLLIDPVTHRTRLTQRHLDELRAGVRDLSSLIVEGCVEYVDVNEE--NNCLVALHESEI 673

Query: 638 GI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
           G  TTH E+     L  ++ LIP P  NQSPRN YQC MGKQ +GT  +N   +    LY
Sbjct: 674 GDRTTHLEIDPVTILGVVSGLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLY 733

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
            +  P  P  +    D ++ D  P G NAIVAV+SY+GYD+EDA++LNK+S +RGF   C
Sbjct: 734 TMVYPQMPMVKTRVLDLVNFDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGR-C 792

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           +   +F + ++    Y   + Y  + G      +          R+    K+ + D  G 
Sbjct: 793 M---VFKKYQTMIKKYANGS-YDRIVGPPDFDSLAAAGGAGMGFRNA---KFSSLDADGI 845

Query: 817 DPANKALEDK---LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
                 +++    +  +        ++ RDP+   +  S   Y      G     V+ V 
Sbjct: 846 SRVGGIVQNGAIMINKEQPTQFNDSVDGRDPLDVTYSPSPTTY-----KGPIPAYVDKVL 900

Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
           ++S       V      +  R  R P +GDKF+SR GQKG+C      ED+PF D G+ P
Sbjct: 901 LTSSEANHFLVK-----VLIRQTRRPEIGDKFSSRHGQKGVCGTIRNQEDMPFNDQGICP 955

Query: 934 DIVFNPHGFPSRMTIG 949
           D++ NPHGFPSRMT+G
Sbjct: 956 DLIMNPHGFPSRMTVG 971



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++G+NY G + + SG+ G  ++  IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1012 VKNGFNYAGKDYLTSGITGEAIECYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPT 1071

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1072 EGRSRDGGLRLGEM--ERDCLIGY 1093


>gi|344229872|gb|EGV61757.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Candida tenuis ATCC 10573]
          Length = 1165

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 259/1020 (25%), Positives = 421/1020 (41%), Gaps = 194/1020 (19%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTDK      DK N    FL   G    H+ SF++ +D  L       +L + D+ P 
Sbjct: 32  KKLTDK-INTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDP- 89

Query: 95  EFEIYGKTLKLNI-VKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW 153
             E Y K L + +  K++ S  K  +  V +      P + R     YS P  V V ++ 
Sbjct: 90  --EFYLKYLDIRVGCKSSTSTAKGLSKEVNL-----VPHDCRLRDLTYSAPIYVDVEYTR 142

Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
             K       E+GR+PIML+S +C L  +   ++ +  E P + GGYFIV G EK+    
Sbjct: 143 GRKIIVHRDLEIGRMPIMLRSNKCLLDGIDDKKMAKYDECPLDPGGYFIVNGTEKV---- 198

Query: 214 INNRRNHPIAIKRNAWKNRGLLFSD--LGVYIRSVKRDESATNNVLHFVTNGSARFMFSH 271
                   I ++    KNR ++ +D   G+   SV        +  + +T     ++  +
Sbjct: 199 --------ILVQEQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHN 250

Query: 272 RKS--------MCLLGMMQSLH--------------------EEG----IHTQHDSKVFF 299
             S        +   G+   L                     EE     I TQ  +  + 
Sbjct: 251 SISEDVPIVIILKAAGITSDLEILQLVCGNDPNYQDLFAINFEEAAKLEIFTQQQALHYV 310

Query: 300 GQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQG 355
           G+  K   +     L++++     +   I+ H+      + +K L ++ MT ++   ++ 
Sbjct: 311 GKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHITVSDLQFREKALYIAMMTRRVLMTMEN 370

Query: 356 MVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMT 411
              +D  D +  + +   G L    +  L KK  S   A + +  +    RAS  ++ ++
Sbjct: 371 PKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANI-DKILKKPSRASEFDALLS 429

Query: 412 NFLATGNVSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
             + + N++ G N  +           M+ +G   +   ++R+ Y+S    + R  S F+
Sbjct: 430 INIHSNNITMGMNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFE 486

Query: 462 EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVS 520
           + R  S PR L+   +G +C   TP+G  CGL+ +L     I+     + + ++  +L  
Sbjct: 487 KSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCFILGC 546

Query: 521 LGMLPLTPVIQSIPEQA-LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIV 579
             +L +     S+  +    + L+G ++G    +     V   R L+  G KI   + I 
Sbjct: 547 EDILEVDSA--SLHAKGNYGIYLNGTLIGTT--RFPAKFVGDFRNLRRTG-KISAFISI- 600

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNI------------------------ 615
           Y    +        +++ T  GR+ RP++ +   N+                        
Sbjct: 601 YTNSHQSA------VHIATDGGRICRPLIIVDKNNVSKVKAKHLLKLQRDEWAFDDFLKH 654

Query: 616 ---EWIGTFEQVFMDICI---TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
              E++   E+    I I    + ++     TH E+     L  +A LIP P  NQSPRN
Sbjct: 655 GLVEYLDVNEENDSLIAIYERDLSDSTKSNITHLEVEPFTVLGAVAGLIPYPHHNQSPRN 714

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
            YQC MGKQ +G    N   +    LY +  P  P  +    + +D D  P G NA VAV
Sbjct: 715 TYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQNATVAV 774

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
           +SY+GYD+EDA++LNK+S +RGF    + +   I L+   N+  T+ + SG+        
Sbjct: 775 MSYSGYDIEDALVLNKASVDRGFGRCQVLRKNTITLKRYPNH--TKDILSGM-------- 824

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL--EDKLGPDGLVYVGAKLNE------ 841
                    R+                D  N+ +     LGPDGL  VG KL        
Sbjct: 825 ---------RV----------------DENNEPIPPHSSLGPDGLGEVGMKLENGQVYVN 859

Query: 842 ------------RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
                         P  +      +R     Y G E   V+ V MS    +   +     
Sbjct: 860 KCVPTNAGETVLNGPGANEQPAESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIK---- 915

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +  R  R P +GDKF+SR GQKG+C +    EDLPF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 916 -VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVG 974



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1008 ILVQNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1067

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG + +G    ERD + +Y
Sbjct: 1068 PTEGRSRDGGLRLGEM--ERDCVIAY 1091


>gi|303287030|ref|XP_003062804.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455440|gb|EEH52743.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1197

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 252/983 (25%), Positives = 406/983 (41%), Gaps = 176/983 (17%)

Query: 72   HIASFDFMLDEGLDLAVEDIA------PIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIH 125
            HI SF+++++E +   +   A        +   Y +   +++ K  + E  +        
Sbjct: 91   HIDSFNYLINEEIRKIIRAKANERVTCDTDPSFYLRYTNIHVGKPCVEEDYI-------- 142

Query: 126  FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-------VGRVPIMLKSKRCH 178
                 P + R     Y+ P  V   ++   +     T E       +GR+P+ML+S RC 
Sbjct: 143  VEDITPQQCRLRDMTYAAPVTVDAEYTRGKEIVTRKTNEQGVGGITIGRIPLMLRSSRCV 202

Query: 179  LRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLIN-----------NRR 218
            L   +  +L   GE P + GGYF+V G EK+V         R++I+              
Sbjct: 203  LTGKSEDELARLGECPLDPGGYFVVKGVEKVVLIQEQLSKNRIIIDVDAKGEIGASVTSS 262

Query: 219  NHPIAIKRNAWKNRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSH 271
             H    K N     G L+        D+ + +        +   V+  V    A      
Sbjct: 263  THERKSKTNIVVKHGKLYLRHNTFVEDVPILVALKAMGTESDQEVVQLVGPDPA------ 316

Query: 272  RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK-----LQYDLRHLNEVEICDYMLTN 326
              +  L+  +Q      I TQ  +  + G   + +      QY     N V+    +L  
Sbjct: 317  -YANLLIPSLQECSALAIFTQQQALEYCGAKVRTQSRMGGYQYGRNRRNRVDEARDILAG 375

Query: 327  CILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------ 376
             +L H+     D+  K   ++ M  ++ H +    Q+D +D    + +   G L      
Sbjct: 376  VVLAHVPVVAYDFRGKCAYVAVMIRRILHAMIDRTQIDDKDYYGNKRLELAGQLLALLFE 435

Query: 377  --YLQLLKKEKSGTSAVLKES------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQ 428
              + +L    K    AVL +S      DI    R  ++ + + + +++GN +  +     
Sbjct: 436  DCFKRLNADLKRQADAVLSKSNRATQFDIIKCIRQDTLSNGLEHAISSGNWTVKRFR--- 492

Query: 429  LMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPD 486
             M+  G   + + ++R+ ++S    + R  S F++ R  S PR L+   WG +CP  TP+
Sbjct: 493  -MERKG---VTQVLSRLSFISALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPE 548

Query: 487  GTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQS---IPEQALMV 540
            G  CGL+ +L     ++   E  P + LA       +LG  PL+ +  +    P  A+ V
Sbjct: 549  GESCGLVKNLALMTHVTTDDEEEPLRKLA------FTLGTQPLSLICGAELHAPGGAI-V 601

Query: 541  MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
             L+G I+G  +          +R L+ +G    K  E V +   + G      LY+ +  
Sbjct: 602  FLNGSILG--VHSAPDRFARDMRYLRRIG----KVGEFVSVHTTQGGR-----LYIASDG 650

Query: 601  GRMLRPVMNLAAGN--------------------------IEWIGTFEQVFMDICITMKE 634
            GR+ RP++ +A G                           +E++   E+    I +   E
Sbjct: 651  GRVCRPLLIVADGEPLATREHLDELKAGRWGFNDFLKRGLVEYLDVNEENISYIALYENE 710

Query: 635  AYPGIT---THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
                IT   TH E+     L   A +IP P  NQSPRN YQC MGKQ MG    N   + 
Sbjct: 711  ----ITRDHTHLEIEPFTMLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRM 766

Query: 692  VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
               +Y L  P  P  +    + +  D    G NA VAV+SY+GYD+EDA+++NK+S +RG
Sbjct: 767  DTLMYLLVYPQKPIVKTKTIELIGYDRLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRG 826

Query: 752  FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            F    + +    +++     Y   TM   V  +  QA    G     RL           
Sbjct: 827  FGRCIVLRKYATQVKK----YSNRTMDRIVAPTESQA----GPTGRHRL----------- 867

Query: 812  DYFGRDPANKALEDKLGPDGLVYVGAK--LNERDPMYSYWKESENRY--VTCRYSGKE-E 866
                RD    ++   + P G VYV  +   N RDP+ +     +  Y      Y G + E
Sbjct: 868  --LDRD-GIASVGTLINP-GDVYVNKQSPSNTRDPLPNPHAMPDTFYRPTPQSYKGPQGE 923

Query: 867  MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             CV V ++    T+ G     C     R  R P VGDKF+SR GQKG+     P  D PF
Sbjct: 924  SCV-VDKVMLTMTDEGVFNVKCL---VRHTRRPEVGDKFSSRHGQKGVIGTILPQRDFPF 979

Query: 927  TDSGLVPDIVFNPHGFPSRMTIG 949
            ++ G+ PD++ NPHGFPSRMT+G
Sbjct: 980  SERGITPDLIMNPHGFPSRMTVG 1002



 Score = 47.0 bits (110), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G++Y G + ++ G+ G  + A IF G V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 1041 GFSYNGKDLLHCGITGEPLVAYIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGR 1100

Query: 828  GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
              DG + +G    ERD +  Y              G   + +E + +SS   E   V   
Sbjct: 1101 ARDGGLRLGEM--ERDCLIGY--------------GASALILERLMISSDQFE-AQVCNK 1143

Query: 888  CAYIGYR 894
            C  + YR
Sbjct: 1144 CGLLAYR 1150


>gi|158297007|ref|XP_317312.4| AGAP008151-PA [Anopheles gambiae str. PEST]
 gi|157014987|gb|EAA12689.4| AGAP008151-PA [Anopheles gambiae str. PEST]
          Length = 1089

 Score =  241 bits (614), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 245/945 (25%), Positives = 400/945 (42%), Gaps = 149/945 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKY-- 129
           HI SF++ ++  +   V+    ++ +       L  +   + +P V  G     FN    
Sbjct: 37  HIDSFNYFINVDIKKIVQANQEVKSDA-DPCFYLKYLNVHVGKPDVEEG-----FNNTKS 90

Query: 130 -YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
             P E R     YS P  V + ++   +        +GR+PIML+S  C L   +  QL 
Sbjct: 91  TTPHECRLRDMTYSAPITVDIEYTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLS 150

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRL--------LINNRRNHPIAIKRNAW----KNRGLLF 236
           +  E P + GGYFI+ G EK++ +        +I    N  I  +  +     K+R +L 
Sbjct: 151 KVNECPMDPGGYFIIRGTEKVILIQEQLSWNKMITEDYNGVIQCQVTSSTHEKKSRTILL 210

Query: 237 SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM--------MQSLHEEG 288
           +  G Y   +K +       +  +    A  + S ++ M L+G+          SL E  
Sbjct: 211 TKHGRYY--LKHNSMTEEIPVAIILK--AMGIASDQEIMQLVGIDPETQKRFAPSLLEAA 266

Query: 289 IH---TQHDSKVFFGQ--IFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
            H   TQ  +  + G   I K       ++    +    +L   IL H+     ++  K 
Sbjct: 267 NHKVFTQQRALEYMGSKLIAKRFTTAATKYKTTADEARDLLATTILAHVPVPSFNFQVKA 326

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKS 386
           + ++ M  ++         +D  D    + +   GSL    +  L K+         +K+
Sbjct: 327 IYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKMIADKN 386

Query: 387 GTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
                  + D+    R + I + +   ++TGN +  +      M+ +G   + + ++R+ 
Sbjct: 387 IPKIKAAQFDVGKHMREALITAGLETAISTGNWTIKRFK----MERAG---VTQVLSRLS 439

Query: 447 YMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTT 498
           Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL      + H+TT
Sbjct: 440 YISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 499

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
                  I     A +  + +  G     P       +  MV ++G I+G  +      L
Sbjct: 500 EVDEEPVIRLAYNAGVEDIRLLGGETINNP-------KVFMVFINGNILGVTI--AYRRL 550

Query: 559 VPKLRMLK---IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNI 615
           V   RM++   ++G  +  S+   + +R          +Y+ T  GR+ RP + + AG  
Sbjct: 551 VEVFRMMRRRGLIGAFV--SIHTSFTQR---------CVYIHTDGGRLCRPYIIVQAGRP 599

Query: 616 EWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
            ++   E+    I    ++  P  TTH E+     L   A L+P P  NQSPRN YQC M
Sbjct: 600 LYLDVNEENDSFIAYQERDIDPEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM 659

Query: 676 GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGY 735
           GKQ MG    N + +    +Y +  P SP  R    +  + D  P G NA VAV+SY+GY
Sbjct: 660 GKQAMGIIGYNQKNRIDTLMYNIVYPQSPMVRSRTIELTNFDKLPAGQNATVAVMSYSGY 719

Query: 736 DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET-------MYSGVDGSMMQA 788
           D+EDA+ILNK+S +RG+    ++K+    ++     Y  +T       M  GV G ++  
Sbjct: 720 DIEDALILNKASIDRGYGRCLVYKNSKCTIKR----YSNQTFDRIMGPMKDGVTGKII-- 773

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
                                            A  + L  DG+V  G +L  +  M + 
Sbjct: 774 ---------------------------------AKHECLDTDGIVSPGERLTCKQTMVN- 799

Query: 849 WKE----SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
            KE      N  +  + SG++ +      + S   E   +      I  R  R P +GDK
Sbjct: 800 -KEMPAVKSNNPIEQKESGQQPIAYSARVLVSTNNEEEFLVK----ILLRQTRRPEIGDK 854

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           F+SR GQKG+  +    EDLPF D G+ PD+V NPHGFPSRMT+G
Sbjct: 855 FSSRHGQKGVTGLIVEQEDLPFNDYGMSPDMVMNPHGFPSRMTVG 899



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G+NY G +  YSG+ G  ++  I+ G V+YQ+L+HMV DK   +    R    +      
Sbjct: 938  GFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGR 997

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              +G + +G    ERD + SY
Sbjct: 998  SREGGLRLGEM--ERDCLISY 1016


>gi|58271124|ref|XP_572718.1| DNA-directed RNA polymerase [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134114572|ref|XP_773994.1| hypothetical protein CNBH0410 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256624|gb|EAL19347.1| hypothetical protein CNBH0410 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228977|gb|AAW45411.1| DNA-directed RNA polymerase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1129

 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 230/907 (25%), Positives = 373/907 (41%), Gaps = 153/907 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R T S YS P  V V +  + K       ++G +P+ML+S  C+L+    A+L   
Sbjct: 97  PMECRLTDSTYSAPIYVDVEYMGEEKRSKQRGVQIGMLPVMLRSDLCNLKGKNEAELARM 156

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
           GE P + GGYF+V G EK+            I ++    KNR L+  D    + +     
Sbjct: 157 GECPMDPGGYFVVKGTEKV------------ILVQEQLSKNRILVMKDKKDEVMAEVTSS 204

Query: 251 SATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHT---------------QHDS 295
           +    V  +V + + R    H      + ++ +L   G+                 Q   
Sbjct: 205 THDRVVKTYVVSKANRLYLRHNSFKEFIPIVIALKAMGLTADKEILQLICGSDERYQEAF 264

Query: 296 KVFFGQIFKEK-------LQY---------------DLRHLNEVEICDYMLTNCILPHLD 333
            V   +  KEK       L++                 + L   +I    L   +L H+ 
Sbjct: 265 GVSLEEAAKEKTFTRRQALEWIGARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVP 324

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----- 384
               ++  K + L+ M  ++   +     +D  D +  + +   G L   L +       
Sbjct: 325 VRNMNFRPKCIYLATMARRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFN 384

Query: 385 ---KSGTSAVLKESDIYAAFRASS--------IESAMTNFLATGNVSAGKNSTLQLMQAS 433
              K     +L++ +    F A +        I  A    ++TGN S  +     + +A 
Sbjct: 385 SELKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKR---FHVERAG 441

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
               +   ++R+ +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 442 ----VTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACG 497

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           L+ +L     I+  +P   L ++ + ++ +  + L    +       MV ++G ++G  +
Sbjct: 498 LVKNLALMTHITTDVPETPLVKM-AFMLGVEDISLVTGNELYRPGVHMVQVNGTLIG--V 554

Query: 552 DQIATSLVPKLRMLKIVGEK-------IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
             +A   V + R L+  G         I    +I+Y+   + G    P + +  G  R+ 
Sbjct: 555 TNMAKRFVRQFRKLRRAGRMSEFVSIFINHHHKIIYIAS-DGGRICRPMIIVEKGRSRVT 613

Query: 605 RPVMNL------------AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLS 652
              + L             AG +E++   E+    I     E   G TTH E+     L 
Sbjct: 614 TEHVRLLKEGKVTFDHFLRAGLVEYLDVNEENDSFIACYENEIEEG-TTHLEIEPFTILG 672

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
            +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    +
Sbjct: 673 AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIE 732

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
            +  +  P G NA VAV+SY+GYD+EDA+ILN++S +RGF    + K +   + + +N  
Sbjct: 733 LIGYNKLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKVTTPMRTFHNGS 792

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
              T Y                           D     D +          DK   DG+
Sbjct: 793 HERTAY--------------------------PDPPPRPDAY-------TFVDK--ADGM 817

Query: 833 VYVGAKLNERDPMYSYWKESENRY----------VTCRYSGKEEMCVEVVRMSSGFTEGG 882
              GA +N+ D M       + R           +   +   E + V+ V ++ G  E G
Sbjct: 818 TAPGATINQYDVMIHRETPVDTRGGGADTQLYKPMPVTHKTPEPILVDKVMLTEG--EDG 875

Query: 883 SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
           ++      I  R  R P +GDKF+SR GQKG+C +  P  D+PF D G+VPDI+ NPHGF
Sbjct: 876 ALIK----ILTRQTRRPELGDKFSSRHGQKGVCGLIVPQADMPFNDQGIVPDIIMNPHGF 931

Query: 943 PSRMTIG 949
           PSRMT+G
Sbjct: 932 PSRMTVG 938



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I +++G++Y G + + SG+ G  M+A ++FG ++YQ+
Sbjct: 949  GVVAGKLQYGTAFGGSKVVDMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQK 1008

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            L+HMV DK   +    R    +   +    DG + +G    ERD +  Y           
Sbjct: 1009 LKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEM--ERDCLIGY----------- 1055

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
               G  ++ +E + +SS   E   V  +C  +GY
Sbjct: 1056 ---GATQLLLERLMISSDAFE-TQVCESCGMLGY 1085


>gi|393235423|gb|EJD42978.1| DNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
          Length = 1129

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 236/911 (25%), Positives = 370/911 (40%), Gaps = 151/911 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  VTV ++            +GR+PIML+S +C L  +  AQL   
Sbjct: 88  PHECRLRDTTYSAPILVTVQYTRGKYVVKKQNVTIGRMPIMLRSNKCVLTGMNEAQLARA 147

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E P + GGYFIV G EK++ L+      + I ++R+  K         GV   SV    
Sbjct: 148 IECPLDPGGYFIVKGTEKVI-LVQEQLSKNRIIVERDPTK---------GVVQASVTSST 197

Query: 251 SATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVF---------FGQ 301
                   +V          H      + ++ +L   G+  Q D ++          F  
Sbjct: 198 HGGMKTKTYVVTKKGNIYLRHNSIHEDVPIVIALKALGL--QSDKEILLVTAGGTEEFRS 255

Query: 302 IFKEKLQ--YDLRHLNEVEICDYM------------------------LTNCILPHLD-- 333
           IF   L+    L      +  DY+                        L   IL HL   
Sbjct: 256 IFSPNLEEASKLGVFTRQQALDYIGARVKINRRVIGPRRPPWEDALEALATVILAHLPVE 315

Query: 334 --DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK--------K 383
             D+  K + ++ MT ++   VQ    +D  D +  + +   G L   L +        +
Sbjct: 316 NFDFRPKAVFVATMTRRVLMAVQDEKLVDDRDYVGNKRLELAGQLLALLFEDLFKRFNTE 375

Query: 384 EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMA 439
            KS    VLK+    + F A      M + +  G V A       L    M+ +G   + 
Sbjct: 376 LKSSIDKVLKKPSRTSEFDAGQTLQFMGDHITAGFVRAISTGNWSLKRFKMERAG---VT 432

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL----- 492
             ++R+ +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL     
Sbjct: 433 HVLSRLSFIAALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLA 492

Query: 493 -LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
            + H+TT+ +    I    +  +  V ++ G        +       MV ++G I+G  L
Sbjct: 493 LMTHITTDVEEEPIIRLAFMLGVEDVCLATGA-------EMYEHNNFMVHVNGLIIG--L 543

Query: 552 DQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV---- 607
            +     V +LR L+  G +I + +  VY+    +       +Y+    GR+ RP+    
Sbjct: 544 TRTPLRFVAQLRKLRRAG-RISEFVS-VYINHHHRA------VYIACDGGRICRPLIIVE 595

Query: 608 ------------------MN----LAAGNIEWIGTFEQVFMDICITMKEAY---PGITTH 642
                             MN    L  G +E++   E+    I +  ++      G TTH
Sbjct: 596 RGQPLVSVEHVELLKAGKMNFDSFLKLGLVEYLDVNEENDSRIALYERDIVLTGSGRTTH 655

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P 
Sbjct: 656 LEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQ 715

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P  +    + +  +  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+   C      
Sbjct: 716 KPMVKTRTIELVGYERLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGR-CQVMRKN 774

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD-YFGRDPANK 821
           + +   Y     + +           Q  + ++    +   V ++    D Y  +     
Sbjct: 775 VTMIRKYPNGTHDRLADAPKDENGNVQKRYDIIQMDGIAG-VGERVDPGDIYVNKQTPTN 833

Query: 822 ALEDKLGPDGLV---YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
           A ++    DG V   Y    ++ + P+  Y  +     V    +  +   V+V+      
Sbjct: 834 ANDNSAAMDGAVAASYRNTPMSYKSPVAGYIDK-----VMLSETENDNTLVKVL------ 882

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
                          R  R P +GDKF+SR GQKG+C +    ED+PF D G+ PD + N
Sbjct: 883 --------------IRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGVCPDSIMN 928

Query: 939 PHGFPSRMTIG 949
           PHGFPSRMT+G
Sbjct: 929 PHGFPSRMTVG 939



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I +E G++Y G + + SG+ G  ++A +FFG ++YQ+
Sbjct: 950  GVLTGKLRYGTAFGGSKVEDMSKILIEHGFSYSGKDMLTSGITGESLEAFVFFGPIYYQK 1009

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            L+HMV DK   +    R    +   +    DG + +G    ERD +  Y
Sbjct: 1010 LKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIGY 1056


>gi|402549534|ref|XP_001565714.2| RNA polymerase I second largest subunit, putative [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|356482963|emb|CAM39212.2| RNA polymerase I second largest subunit, putative [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1567

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 180/591 (30%), Positives = 283/591 (47%), Gaps = 72/591 (12%)

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
            +   L TGN++  +       Q SG+V+MAE++N  R+    R VHRG    +MRSSE R
Sbjct: 782  LRRLLVTGNLNLDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVR 841

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL-----GML 524
            +   +A+GFIC V +PDG  CG+LNHL+ +   S      + AQ+  ++           
Sbjct: 842  KYPCEAYGFICMVQSPDGEDCGVLNHLSISMISSNSPDVAMTAQLREMVCKAVPNVRSRA 901

Query: 525  PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK------------IVGEKI 572
              + V+  + E  + V ++G ++GY+    A      LR LK            IV  K 
Sbjct: 902  TRSSVVDQLCE-TVPVWMEGELLGYLSPTDAMKAAATLRQLKALTLRSQVHVSGIVRRKD 960

Query: 573  PK---SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG----------NIEWIG 619
                 +LE+VY+     G     GLY+F   GR++RPV  L +            + +IG
Sbjct: 961  ASPLHTLEVVYVA---PGSRDPAGLYVFYDCGRLMRPVQLLESSVRTGATHLPFPLVFIG 1017

Query: 620  TFEQVFMDICITMKEAYPGITT------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            T+EQ + D+     +    +        + E + T+F+S  +  IP  + N SPRN++QC
Sbjct: 1018 TWEQSWADVAAVPSDPLDAVVQLNRKYEYMEQNGTNFISLTSATIPFFEHNCSPRNLFQC 1077

Query: 674  QMGKQTMGT--PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
             + KQ+ GT    L WR +   KL+R   P     R +  D   +D+  +G NA++A+++
Sbjct: 1078 GLSKQSSGTQLQALAWRKE--AKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILA 1135

Query: 732  YTGYDMEDAMILNKSSYERG-FAHGCIFKSMFIELESGYNYYGTETMYSGVD-GSMMQAQ 789
            YTGYDM+DA+I+N ++ +RG    G     +      G +       ++ +  G    AQ
Sbjct: 1136 YTGYDMDDAVIINTTTTQRGMLTAGVTVAKIVTAAGRGSDKDDVFVFHNLLSTGERFTAQ 1195

Query: 790  IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER-DP---- 844
            +    +  +R+   +         F RD     L D    +  VY  AK  ER DP    
Sbjct: 1196 LEANGLPPKRVNASLE-----AFSFDRDHKYPGLRD----NSDVYCCAKRVERVDPFTNK 1246

Query: 845  -MYSYWKESENRYVTCRY--SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
             +Y Y +    ++   R+   G++    +V+ +     +     P    + +RI R PTV
Sbjct: 1247 SIYEYTRHHATKW---RHFDKGEDAWVQQVIPLVYSGPD-----PTSVLMIFRIPRPPTV 1298

Query: 902  GDKFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            GDKF+SR GQKG   +   + DLPF T SG+ PD++ NPH FPSRMT+G +
Sbjct: 1299 GDKFSSRHGQKGTLPLHISSHDLPFSTTSGITPDVIINPHAFPSRMTVGMM 1349



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +++GYN YG E +  G+ G  M+A +F G+  YQRLRHMVSDKWQ +
Sbjct: 1388 VKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQAR 1434



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 169 PIMLKSKRCHLRNLTPAQLIERG-EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M+K  RC LRN+       R  E   E GGYFI+ G E+++R L+  R N PI I R 
Sbjct: 426 PEMVKGARCALRNVDARLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIFRE 485

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            +  +G  FS   V IR  +       N  ++ T G   F F+ +
Sbjct: 486 RFATQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSFARK 530


>gi|320581721|gb|EFW95940.1| DNA-directed RNA polymerase III [Ogataea parapolymorpha DL-1]
          Length = 1138

 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 257/1005 (25%), Positives = 420/1005 (41%), Gaps = 173/1005 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVED----IAPIEFE 97
           K+LTD       DK N    FL   G    H+ SF+F +D  L   ++     ++ ++ E
Sbjct: 14  KSLTDP-INTAEDKWNLLPAFLQVKGLVKQHLDSFNFFVDTDLKKIIQANEKVLSDVDPE 72

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            Y K L + +   +   P      +        P E R     YS P  V V ++   K 
Sbjct: 73  FYLKYLDIRVGYKSGGNPNETEVLLP-------PHECRLRDLTYSAPIYVDVEYTRGRKI 125

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                 E+GR+PIML+S +C L     AQ+    E P + GGYFIV G EK++ L+    
Sbjct: 126 IIHRDLEIGRMPIMLRSNKCILNGKNEAQMAYLNECPLDPGGYFIVNGTEKVI-LVQEQL 184

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNG-----------SAR 266
             + I ++ +  KN          + R  K      N+ ++   N             A 
Sbjct: 185 SKNRIIVEADEKKNIVQASVTSSTHERKSKTYVVTKNDKIYLKHNSISEEIPIVIVLKAA 244

Query: 267 FMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQYDLRHL 314
            + S  + + L+    S++++            GI++Q ++  + G+  K   + +   L
Sbjct: 245 GLVSDLEILQLVCGNDSVYQDLFAVNFEEAAKLGIYSQKEALEYIGRKVKTIRRLNAPKL 304

Query: 315 NEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI 370
           + ++     +   ++ H+     D+ +K L ++ MT ++   +     +D  D +  + +
Sbjct: 305 SILQEGIEAIATTVIAHITVENLDFKEKALYIAIMTRRVIMAMHNPKLVDDRDYVGNKRL 364

Query: 371 MTGGSL----YLQLLKKE----KSGTSAVLKESDIYAAFRA--------SSIESAMTNFL 414
              G L    +  L KK     K+    +LK+    + F A        S+I + +   +
Sbjct: 365 ELAGQLMSLLFEDLFKKFNNDFKANLDKILKKPSRVSEFDALLHINIHSSNITTGLNRAI 424

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLR 472
           +TGN S  +      M+ +G   +   ++R+ Y+S    + R  S F++ R  S PR L+
Sbjct: 425 STGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQ 477

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPV 529
              +G +C   TP+G  CGL+ +L     I+   E  P K L  I      LG   ++ +
Sbjct: 478 PSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEDPIKKLCYI------LGAEDISVI 531

Query: 530 IQSIPEQ--ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
             S         V L+G ++G    +     V K R L+  G K+   + I         
Sbjct: 532 DSSTLHNNGTFGVHLNGTLIGTT--RFPNVFVSKFRHLRRTG-KLSAFVSIFTNVHQS-- 586

Query: 588 MGLYPGLYLFTGPGRMLRPVMN--------------------------LAAGNIEWIGTF 621
                 +++    GR+ RP++                           L  G +E++   
Sbjct: 587 -----AVHIAADGGRICRPLIIVENGKAKVTAEHLKRLRDGEWSFDDFLTNGLVEYLDVN 641

Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
           E+    I +  K+   G TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G
Sbjct: 642 EENDSLIALYEKD-ITGSTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 700

Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
               N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD+EDA+
Sbjct: 701 AIAYNQFRRIDTLLYLMCYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDAL 760

Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
           +LNK+S +RGF    + +     L+   N+  ++ + +G+        IF         +
Sbjct: 761 VLNKASIDRGFGRCQVLRKTTAVLKRYPNH--SKDILAGMRVKEDGKPIF---------Q 809

Query: 802 HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK-------LNERDPMYSYW----- 849
           H                      + LGPDGL  VG +       +N+  P  +       
Sbjct: 810 H----------------------EALGPDGLAEVGVEVQSGQTYINKCVPTNATESVVGG 847

Query: 850 -----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
                ++ ++R     Y       V+ V MS    +   +      +  R  R P +GDK
Sbjct: 848 QPTINQQQQHRETPVNYRAPVSSVVDQVMMSVSDNDQALIK-----VLLRQTRRPELGDK 902

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           F+SR GQKG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 903 FSSRHGQKGVCGIIVQQEDMPFNDDGISPDIIMNPHGFPSRMTVG 947



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 981  ILIDKGFNYSGKDMLYSGITGEALQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1040

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   +  
Sbjct: 1041 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFD-V 1083

Query: 883  SVTPNCAYIGY 893
             V  +C  +GY
Sbjct: 1084 DVCNSCGLMGY 1094


>gi|374633176|ref|ZP_09705543.1| DNA-directed RNA polymerase subunit B [Metallosphaera
           yellowstonensis MK1]
 gi|373524660|gb|EHP69537.1| DNA-directed RNA polymerase subunit B [Metallosphaera
           yellowstonensis MK1]
          Length = 1124

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 253/958 (26%), Positives = 409/958 (42%), Gaps = 143/958 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SF+  +   L   +++   I  EI G  LK+ + K  + +P+V     G    +  P
Sbjct: 24  HLDSFNDFVRNKLQEIIDEQGEITTEIPG--LKIKLGKIRVGKPRVREADKGDR--EITP 79

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     YS P  +T+    +   G      +G +PIMLKS       L+P +L+E G
Sbjct: 80  MEARLRNLTYSAPIYLTMIPIENNIEGEPIEVHIGDIPIMLKSSADPTSELSPEKLVEIG 139

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
           E P + GGYFI+ G E+++         R+L++  ++       N      ++ S  G  
Sbjct: 140 EDPKDPGGYFIINGSERVIVTQEDLATNRVLVDVGKSGS-----NITHTAKIISSTAGYR 194

Query: 243 IR-SVKRDESATNNV--------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------ 287
           +  +++R + +T +V        + FV    A  + + R     + +   +  E      
Sbjct: 195 VPITIERLKDSTIHVSFPAMPGRIPFVILMRALGISTDRDVTYAVSLDPEIQNELLPSIE 254

Query: 288 ---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFL 340
               I T+ D+  F G       + ++R    ++  + +L    LPHL     D   K  
Sbjct: 255 QASSIATKEDALDFIGNRVAIGQKREMR----IQKAEQILDKYFLPHLGTSPSDRMAKAY 310

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSG 387
            L+    KL  +  G  + D +D    + +   G L+  L +              EKS 
Sbjct: 311 YLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVKDLVYQLEKSK 370

Query: 388 TSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
                +   + A  R   I   + + LATGN   G+    QL+  + ++ M         
Sbjct: 371 VRG--RRLALNALVRPDIISERIRHALATGNWVGGRTGVSQLLDRTNWLSM--------- 419

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
           +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ ++    QIS  I 
Sbjct: 420 LSHLRRVV-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNIALLAQISVGIN 478

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM--------VMLDGRIVGYILDQIATSLV 559
            +    +   L +LG+ P+  +I+ +     +        V+L+G++VGY  D     L 
Sbjct: 479 ER---NVEKTLYNLGVTPVDEIIRKVEAGEDVSEYQGWSRVILNGKLVGYYPD--GEELA 533

Query: 560 PKLRMLKIVGE---------KIPKSLEIVYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMN 609
            K+R  +  GE          + +S + VY+   + G    P + +  G P      + N
Sbjct: 534 QKIRDRRREGELSDEVNVSHMVTESFDEVYIN-CDGGRVRRPLVVVRNGKPLVAKEDIEN 592

Query: 610 LAA-----------GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLI 658
           L             G IE++   E+    I +  K+      TH E+     L   A++I
Sbjct: 593 LKKGKITFDTLVREGKIEFLDAEEEENALIAMEPKDVTKD-HTHLEIWAPAVLGITASII 651

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P  +    + +    
Sbjct: 652 PYPEHNQSPRNTYQSAMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTE 711

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
            P G NAI A++SYTGY+MEDA+I+NKSS +RG     +F+S F  L     Y   E  Y
Sbjct: 712 RPAGNNAIFALMSYTGYNMEDAVIMNKSSVDRG-----MFRSTFFRL-----YSAEEIKY 761

Query: 779 SGVDGSMM---QAQI--FFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKALEDKLGPDG 831
            G     +   +A +  + G  +Y+ L    +VS + + K           L  K+ P  
Sbjct: 762 PGGQEDQILLPEAGVRGYKGKEYYRLLESNGIVSPEVEVK-------GGDVLIGKVSPPR 814

Query: 832 LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
            +    +  E  P  S    S    +  R+   E   V++V ++   T  G+       +
Sbjct: 815 FL---QEFKELSPDQSKRDTS----IITRHG--ERGTVDLVLVTE--TSDGN---KLVKV 860

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             R  R P +GDKFA+R GQKG+  +  P  D+P+T  GLVPDI+ NPH  PSRMT+G
Sbjct: 861 RVRDLRIPEIGDKFATRHGQKGVIGMLIPQVDMPYTVRGLVPDIILNPHALPSRMTVG 918



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
            E GY   GTE +Y G  G  ++++I FG+V+YQ+L HMV+DK   +   GR P
Sbjct: 955  ELGYLSDGTEVVYDGRTGEKIKSRILFGIVYYQKLHHMVADKMHGR---GRGP 1004


>gi|46669|emb|CAA32924.1| RNA polymerase subunit B (AA 1-1126) [Sulfolobus acidocaldarius]
          Length = 1126

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 251/964 (26%), Positives = 406/964 (42%), Gaps = 153/964 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SF+  L   L   + +   I  E+ G  LK+ + K    +P +     G    +  P
Sbjct: 24  HLDSFNDFLRNKLQQVIYEQGEIVTEVPG--LKIKLGKIRYEKPSIRETDKG-PMREITP 80

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     YS P  +++    +   G      +G +PIMLKS      NL   +LIE G
Sbjct: 81  MEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPIDKLIEIG 140

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLINNRRN-----HPIAIKRNAWKNR----- 232
           E P + GGYFIV G EK++         R+L++  ++     H   +  +A   R     
Sbjct: 141 EDPKDPGGYFIVNGSEKMIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVMI 200

Query: 233 -GLLFSDLGVYIRSV--KRDESATNNVLHFVTNGSARFMFS---HRKSMCLLGMMQSLHE 286
             L  S + +   +V  +   +     L FVT+    +  S     ++  L  + Q+   
Sbjct: 201 ERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELLPSLEQA--- 257

Query: 287 EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCL 342
             I +  ++  F G     ++    +  N ++  + ++    LPHL    +D   K   L
Sbjct: 258 SSITSAEEALDFIGN----RVAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYL 313

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTS 389
           +    K+  +  G  + D +D    + +   G L+  L +              EKS   
Sbjct: 314 ASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVR 373

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
              +   + A  RA  I   + + LATGN   G+    QL+  + ++ M         +S
Sbjct: 374 G--RRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLSM---------LS 422

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    Q+S  I   
Sbjct: 423 HLRRVV-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINES 481

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQA---------LMVMLDGRIVGYILDQIATSLVP 560
           V+ +   V   LG++ +  VI+ I EQ            V L+GR++GY  D     L  
Sbjct: 482 VVER---VAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYED--GKELAK 536

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----------- 609
           K+R  +  G K+   + + Y+            +++    GR+ RP++            
Sbjct: 537 KIRESRRQG-KLSDEVNVAYI-----ATDYLNEVHINCDAGRVRRPLIIVNNGTPLVDTE 590

Query: 610 ---------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNL 654
                          +  G IE+I   E+    + +  ++  P   TH E+  +  L  +
Sbjct: 591 DIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPD-HTHLEIWPSAILGII 649

Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
           A++IP P+ NQSPRN YQ  M KQ++G    N++ +   + + L  P  P  +      +
Sbjct: 650 ASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRMLGVI 709

Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
             ++ P G NAI+A++SYTGY+MED++I+NKSS ERG     +++S F  L     Y   
Sbjct: 710 GYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERG-----MYRSTFFRL-----YSTE 759

Query: 775 ETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK--LGPD-- 830
           E  Y G                  +   +V+ +   K Y G+D   + LED   + P+  
Sbjct: 760 EVKYPG-----------------GQEDKIVTPEAGVKGYKGKD-YYRLLEDNGVVSPEVE 801

Query: 831 ---GLVYVGAKLNER--DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
              G V +G     R          E   R  +      E   V++V ++    EG  + 
Sbjct: 802 VKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETL-EGNKLV 860

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                +  R  R P +GDKFA+R GQKG+  +     D+P+T  G+VPDI+ NPH  PSR
Sbjct: 861 K----VRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSR 916

Query: 946 MTIG 949
           MTIG
Sbjct: 917 MTIG 920



 Score = 45.4 bits (106), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 774  TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            TE +Y G  G  ++++I FG+V+YQ+L HMV+DK   +
Sbjct: 966  TEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHAR 1003


>gi|70606496|ref|YP_255366.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
           DSM 639]
 gi|449066708|ref|YP_007433790.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
           N8]
 gi|449068982|ref|YP_007436063.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
           Ron12/I]
 gi|73920765|sp|P11513.2|RPOB_SULAC RecName: Full=DNA-directed RNA polymerase subunit B
 gi|68567144|gb|AAY80073.1| DNA directed RNA polymerase subunit B [Sulfolobus acidocaldarius
           DSM 639]
 gi|449035216|gb|AGE70642.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
           N8]
 gi|449037490|gb|AGE72915.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
           Ron12/I]
          Length = 1126

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 253/967 (26%), Positives = 408/967 (42%), Gaps = 159/967 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIV---KAAISEPKVPAGPVGIHFNK 128
           H+ SF+  L   L   + +   I  E+ G  +KL  +   K +I E     GP+     +
Sbjct: 24  HLDSFNDFLRNKLQQVIYEQGEIVTEVPGLKIKLGKIRYEKPSIRE--TDKGPM----RE 77

Query: 129 YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
             P EAR     YS P  +++    +   G      +G +PIMLKS      NL   +LI
Sbjct: 78  ITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPIDKLI 137

Query: 189 ERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRN-----HPIAIKRNAWKNR-- 232
           E GE P + GGYFIV G EK++         R+L++  ++     H   +  +A   R  
Sbjct: 138 EIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQ 197

Query: 233 ----GLLFSDLGVYIRSV--KRDESATNNVLHFVTNGSARFMFS---HRKSMCLLGMMQS 283
                L  S + +   +V  +   +     L FVT+    +  S     ++  L  + Q+
Sbjct: 198 VMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELLPSLEQA 257

Query: 284 LHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKF 339
                I +  ++  F G     ++    +  N ++  + ++    LPHL    +D   K 
Sbjct: 258 ---SSITSAEEALDFIGN----RVAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKG 310

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKS 386
             L+    K+  +  G  + D +D    + +   G L+  L +              EKS
Sbjct: 311 YYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKS 370

Query: 387 GTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
                 +   + A  RA  I   + + LATGN   G+    QL+  + ++ M        
Sbjct: 371 KVRG--RRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLSM-------- 420

Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
            +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    Q+S  I
Sbjct: 421 -LSHLRRVV-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGI 478

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA---------LMVMLDGRIVGYILDQIATS 557
              V+ +   V   LG++ +  VI+ I EQ            V L+GR++GY  D     
Sbjct: 479 NESVVER---VAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYED--GKE 533

Query: 558 LVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN-------- 609
           L  K+R  +  G K+   + + Y+            +++    GR+ RP++         
Sbjct: 534 LAKKIRESRRQG-KLSDEVNVAYI-----ATDYLNEVHINCDAGRVRRPLIIVNNGTPLV 587

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
                             +  G IE+I   E+    + +  ++  P   TH E+  +  L
Sbjct: 588 DTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPD-HTHLEIWPSAIL 646

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
             +A++IP P+ NQSPRN YQ  M KQ++G    N++ +   + + L  P  P  +    
Sbjct: 647 GIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRML 706

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
             +  ++ P G NAI+A++SYTGY+MED++I+NKSS ERG     +++S F  L     Y
Sbjct: 707 GVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERG-----MYRSTFFRL-----Y 756

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK--LGP 829
              E  Y G                  +   +V+ +   K Y G+D   + LED   + P
Sbjct: 757 STEEVKYPG-----------------GQEDKIVTPEAGVKGYKGKD-YYRLLEDNGVVSP 798

Query: 830 D-----GLVYVGAKLNER--DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
           +     G V +G     R          E   R  +      E   V++V ++    EG 
Sbjct: 799 EVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETL-EGN 857

Query: 883 SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
            +      +  R  R P +GDKFA+R GQKG+  +     D+P+T  G+VPDI+ NPH  
Sbjct: 858 KLVK----VRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHAL 913

Query: 943 PSRMTIG 949
           PSRMTIG
Sbjct: 914 PSRMTIG 920



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 774  TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            TE +Y G  G  ++++I FG+V+YQ+L HMV+DK   +
Sbjct: 966  TEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHAR 1003


>gi|310798473|gb|EFQ33366.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1151

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 241/925 (26%), Positives = 383/925 (41%), Gaps = 168/925 (18%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N+  P E R     Y+ P  V +A+  D          +GR+P+MLKS  C L     A+
Sbjct: 100 NEVTPMECRLRDMTYAAPIMVDIAYIRDKSKIVRKNVPLGRLPVMLKSSICRLGGANNAE 159

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI--AIKRNAW--------------- 229
           +    E P + GGYFI+ G EK++ +     +N  I  A ++N+                
Sbjct: 160 MSRMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNSVITASVTSSTHERKSK 219

Query: 230 ------KNRGLLFSDL---GVYIRSVKRDESATNN--VLHFVTNGSARFMFSHRKSMCLL 278
                 K+R LL +++   G+ I  + +      +  ++  V   + ++          L
Sbjct: 220 TYVTLKKDRILLTANILVEGIPIVIILKALGGLTDYEIMQLVAGDNGKYQDE------FL 273

Query: 279 GMMQSLHEEGIHTQHDSKVFFG---QIFKEKLQYDLR-HLNEVEICDYMLTNCILPHLD- 333
              +   + G++TQ  +  + G   ++ K ++ +  +   N VE     L N I+ H+  
Sbjct: 274 VQFEEATKAGVYTQQQALEYIGARVKMGKSRVPFAAQVRRNHVEEALDALANLIIAHVPI 333

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLK 382
              D++ K + ++ MT ++         +D  D +  + +   G         L+ Q   
Sbjct: 334 EGLDFYPKAIYVAFMTRRVLMAQNDPSLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFCG 393

Query: 383 KEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
             KS    VLK+ +      A ++ S   N +  G   A        +Q   + +   N+
Sbjct: 394 NVKSSIDKVLKKDNRAVPLDAVNMISNHANMIGQGINRA--------IQTGNWTVKRFNM 445

Query: 443 NR---------MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           NR         + Y+S    + R  S F++ R  S PR L+   WG +C   TP+G  CG
Sbjct: 446 NRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACG 505

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGY 549
           L+ +L     I+  +    + +    L   G+ P+      +   E + ++ ++G    +
Sbjct: 506 LVKNLALMTHITTNVEEAPVKRWVFTL-DAGVEPIRNFSGGEMHRETSYVIHING--TPF 562

Query: 550 ILDQIATSLVPKLRMLKIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP-- 606
            L +       K R ++  G   P  S+ I            +  +++ T  GR+ RP  
Sbjct: 563 ALTRYPKRFAGKFRTMRRRGWISPFVSIHI---------NNHFNAVHIATDEGRICRPYI 613

Query: 607 -VMN-----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
            V N                       L  G +E++   E+    + +  K+  P +TTH
Sbjct: 614 IVRNGKPKLKEEHLRLLQLGRATFDDFLTHGIVEYLDVNEENDTLVALYEKDVTP-LTTH 672

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P 
Sbjct: 673 MEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQ 732

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P         ++ D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+   
Sbjct: 733 RPMVISKTIQLVNYDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYT 792

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            EL+   N                              R  + D     D  GR   ++A
Sbjct: 793 AELQKYPNGR----------------------------RERIGDP--VNDENGRTTKHEA 822

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKE----------------SENRYVTCRYSGKEE 866
           L+D    DGL  VG K+N  + M    KE                SE R  +  Y   + 
Sbjct: 823 LDD----DGLAIVGYKVNSGEVMIK--KETPLDTGSTGIGMDRGPSEFRDSSISYRIADP 876

Query: 867 MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             ++ V +S    E   V      +  R  R P +GDKF+SR GQKG+  +    EDLPF
Sbjct: 877 AYIDKVMVSHTERETMVVK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPF 931

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           +D+GLVPDI+ NPHGFPSRMT+G L
Sbjct: 932 SDTGLVPDIIMNPHGFPSRMTVGKL 956



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 23/151 (15%)

Query: 750  RGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            + +  G  F+S  +E      ++ G+++ G +   SG+ G  ++A IF G ++YQRL+HM
Sbjct: 971  KDYGFGDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHM 1030

Query: 804  VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
            V DK  ++    R    +   +    DG + +G    ERD + +Y              G
Sbjct: 1031 VQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------G 1074

Query: 864  KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
              ++ +E + +SS  T+   +   C   GY+
Sbjct: 1075 ASQLLLERLMISSDGTQ-IDICQQCGLFGYK 1104


>gi|168006293|ref|XP_001755844.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693163|gb|EDQ79517.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1135

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 235/897 (26%), Positives = 373/897 (41%), Gaps = 139/897 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P + R     YS P +V V ++   +  G+    +GR+PIML+S RC L     AQL + 
Sbjct: 99  PQQCRLRDMTYSAPISVDVEYTRGKEVVGSIN--IGRMPIMLRSSRCILAGKNEAQLAKV 156

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD-----LGVYIRS 245
           GE P + GGYF+V G EK+            I I+    KNR ++ +D           S
Sbjct: 157 GECPLDPGGYFVVKGTEKV------------ILIQEQLSKNRIIITTDSSGSVAASVTSS 204

Query: 246 VKRDESATNNVLH----------------FVTNGSARFMFSHRKSMCLLGM--------- 280
               +S TN V+                  V    A  M S ++ + ++G          
Sbjct: 205 THERKSKTNMVVKHERIYLRHNTFGDDIPIVVVMRAMGMESDQEIVQMVGRDPKYAGILN 264

Query: 281 --MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----D 334
             +Q      I+T H +  + G   +     D+            L   +L H+     D
Sbjct: 265 PSLQECAALKIYTSHQALEYLGSKVRVDEARDI------------LATVVLAHVPVHQFD 312

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKE 394
           +  K + L+ +  K+   +     +D  D +  + +   G L   L +      +A LK+
Sbjct: 313 FRAKCIYLAVIIRKMLEAMLNREAVDDMDYVGNKRLELAGQLLSLLFEDLFKRMNAELKK 372

Query: 395 S--------------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
           S              DI    R  ++ + + + +++GN +  +      M   G   +  
Sbjct: 373 SMDATLSKANRSTQFDIIKLIRPDTLTNGLEHAISSGNWAVKRFK----MDRKGVTQVVS 428

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
            ++ +  + H   +   S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L+  
Sbjct: 429 RLSFIAALGHMTRI--SSQFEKTRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLSLM 486

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATSL 558
             ++       L ++ + L  +  L L    +    +  +V  +G I+G +        +
Sbjct: 487 THVTTDEEEAPLIELCTTL-GVEDLSLLSGEELHSPKTYLVFFNGTILGVHRRPNRFAEV 545

Query: 559 VPKLRMLKIVGEKI-----PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN---- 609
           + KLR    +GE +     PK    + +   + G    P +    G  R+    M     
Sbjct: 546 LRKLRRAGKIGEFVSVHVNPKHQRNIQIA-SDGGRVCRPLVIADKGVSRVKEHHMKELKD 604

Query: 610 --------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                   L  G +E++   E+    I +   +A P  TTH E+     L   A LIP P
Sbjct: 605 GFRTFDDFLREGLVEYLDVNEENNSLIALYEGDATPD-TTHIEIEPFTILGVCAGLIPYP 663

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
             NQSPRN YQC MGKQ MG    N   +    LY L  P  P       + +  D    
Sbjct: 664 HHNQSPRNTYQCAMGKQAMGNIAYNQLQRMDTLLYLLVYPQRPLLSTKSIELVGYDKLGA 723

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G NA VAV+SY+GYD+EDA+++NKSS +RGF    + K   + ++   N      M    
Sbjct: 724 GQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVIKKSVVPMKKYANRTADRIM---- 779

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG----- 836
               +Q+    GV         V  + Q +D+ G      A+ + + P G +YV      
Sbjct: 780 -APELQSSAKGGV--------QVVARQQLQDHDG----IAAVGEMIRP-GDIYVNKQSPI 825

Query: 837 -AKLNERDPMY---SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
             + N  +PM    S +K +   Y   + +  E   V+ V ++S   +       C    
Sbjct: 826 DTRNNVNNPMALPDSAYKRTPQTY---KGAAGETAVVDKVLLTS--NDENHFVVKCL--- 877

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            R  R P VGDKF+SR GQKG+C      ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 878 IRQTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 934



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ GS +QA IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 975  VKHGFSYSGKDFIYSGITGSPLQAYIFMGPIYYQKLKHMVLDKMHARARGPRVVLTRQPT 1034

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    +G + +G    ERD + +Y              G   M +E + +SS   +   V
Sbjct: 1035 EGRSREGGLRLGEM--ERDCLIAY--------------GASMMILERLMISSDQFQ-IQV 1077

Query: 885  TPNCAYIGY 893
               C  IGY
Sbjct: 1078 CTKCGMIGY 1086


>gi|429851912|gb|ELA27071.1| DNA-directed RNA polymerase iii 130 kda polypeptide [Colletotrichum
           gloeosporioides Nara gc5]
          Length = 1451

 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 241/926 (26%), Positives = 387/926 (41%), Gaps = 170/926 (18%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N+  P E R     Y+ P  V +A+  D          +GR+P+MLKS  C L   T A+
Sbjct: 100 NEVTPMECRLRDMTYAAPIMVDIAYIRDKSKIVRKNVPLGRLPVMLKSSICRLGGATNAE 159

Query: 187 LIERGEHPDEWGGYFIVGGHEKLV---------RLLIN-NRRNHPIAIKRNAW------- 229
           +    E P + GGYFI+ G EK++         R+++  + +N+ I     +        
Sbjct: 160 MSRMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNNVITASVTSSTHERKSK 219

Query: 230 ------KNRGLLFSDL---GVYIRSVKRDESATNN--VLHFVTNGSARFMFSHRKSMCLL 278
                 K+R LL +++   G+ I  + +     ++  ++  V   + ++          L
Sbjct: 220 TYVTLKKDRILLTANILVEGIPIVIILKALGGLSDYEIMQLVAGDNGKYQDE------FL 273

Query: 279 GMMQSLHEEGIHTQHDSKVFFG---QIFKEKLQYDLR-HLNEVEICDYMLTNCILPHLD- 333
              +   + G++TQ  +  + G   ++ K ++ +  +   N VE     L N I+ H+  
Sbjct: 274 VQFEEATKVGVYTQQQALEYIGARVKMGKSRVPFSAQVRRNHVEEALDALANLIIAHVPI 333

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLK 382
              D++ K + ++ MT ++      +  +D  D +  + +   G         L+ Q   
Sbjct: 334 EGLDFYPKAVYVAFMTRRVLMAQSNLSLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFCG 393

Query: 383 KEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
             KS    VLK+ +      A ++ S   N +  G   A        +Q   + +   N+
Sbjct: 394 NVKSSIDKVLKKDNRAVPLDAVNMISNHANMIGQGINRA--------IQTGNWTVKRFNM 445

Query: 443 NR---------MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           NR         + Y+S    + R  S F++ R  S PR L+   WG +C   TP+G  CG
Sbjct: 446 NRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACG 505

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGY 549
           L+ +L     I+  +  + + +    L   G+ P+      +   E + ++ ++G    +
Sbjct: 506 LVKNLALMTHITTNVEEEPVKRWVFTL-DAGVEPIRNFSGGEMHREGSFVIHING--TPF 562

Query: 550 ILDQIATSLVPKLRMLKIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP-- 606
            L +       K R ++  G   P  S+ I            +  +++ T  GR+ RP  
Sbjct: 563 ALTRYPKRFAGKFRTMRRRGWISPFVSIHI---------NNHFNAVHIATDEGRICRPYI 613

Query: 607 -VMN-----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITT- 641
            V N                       L  G +E++   E+   D  + + E    +TT 
Sbjct: 614 IVKNGKPKLKAEHLKLLQLGKATFDDFLTHGIVEYLDVNEE--NDTLVALYETDVTMTTT 671

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P
Sbjct: 672 HMEIEPFTVLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYP 731

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P         ++ D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+  
Sbjct: 732 QRPMVISKTIQLVNYDKLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKY 791

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
             EL+   N                              R  + D     D  GR   ++
Sbjct: 792 TAELQKYPNGR----------------------------RERIGDP--VNDENGRTKKHE 821

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKE----------------SENRYVTCRYSGKE 865
           AL+D    DGL  VG K+N  + M    KE                SE R  +  Y   +
Sbjct: 822 ALDD----DGLAIVGYKINSGETMIK--KETPLDTGSTGIGMDRGPSEFRDSSISYRIAD 875

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              ++ V +S    E   V      +  R  R P +GDKF+SR GQKG+  +    EDLP
Sbjct: 876 PAYIDKVMVSHTERETMVVK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLP 930

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F+D+GLVPDI+ NPHGFPSRMT+G L
Sbjct: 931 FSDTGLVPDIIMNPHGFPSRMTVGKL 956



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 23/151 (15%)

Query: 750  RGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            + +  G  F+S  +E      ++ G+++ G +   SG+ G  ++A IF G ++YQRL+HM
Sbjct: 971  KDYGFGDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHM 1030

Query: 804  VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
            V DK  ++    R    +   +    DG + +G    ERD + +Y              G
Sbjct: 1031 VQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------G 1074

Query: 864  KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
              ++ +E + +SS  T+   +   C   GY+
Sbjct: 1075 ASQLLLERLMISSDGTQ-LDICQQCGLFGYK 1104


>gi|255083755|ref|XP_002508452.1| predicted protein [Micromonas sp. RCC299]
 gi|226523729|gb|ACO69710.1| predicted protein [Micromonas sp. RCC299]
          Length = 1159

 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 264/1018 (25%), Positives = 425/1018 (41%), Gaps = 191/1018 (18%)

Query: 40  TLSAPSLKNLTDKNFGKPPDKQNEFLLTLG--APHIASFDFMLDEGLDLAVEDIA----- 92
           TL+AP +K L DK F   P     FL   G    HI SF+++++E +   +   A     
Sbjct: 29  TLNAP-IKTLKDK-FELLP----AFLKVRGLVRQHIDSFNYLINEEIKKIIAAKANEKVT 82

Query: 93  -PIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAW 151
              +   Y K   + + K ++ E  +          +  P + R     Y+ P  V V +
Sbjct: 83  CDTDPNFYLKYTNIQVGKPSVEEDFI--------VEEITPQQCRLRDMTYAAPVTVDVEY 134

Query: 152 SWDGKAGGTFTKE-------VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
           +  GK   T T +       +GR+P+ML+S RC L   +  +L   GE P + GGYF+V 
Sbjct: 135 TR-GKEIVTNTSKNGVGGVTIGRIPLMLRSSRCILTGKSEEELARLGECPLDPGGYFVVK 193

Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSVKRDESATNNVL--- 257
           G EK+            I I+    KNR ++  D    +G  + S   +  +  N++   
Sbjct: 194 GTEKV------------ILIQEQLSKNRIIIDIDNKGEVGASVTSSTHERKSKTNIVVKH 241

Query: 258 ------HFVTNGSARFMFSHRKSMC-------------------LLGMMQSLHEEGIHTQ 292
                 H         M + +   C                   LL  +       I TQ
Sbjct: 242 GKLYLRHNTFTDEIPIMVALKAMGCESDQEVVQMVGPDTAYASLLLPSLLECSALAIFTQ 301

Query: 293 HDSKVFFGQIFK--EKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMT 346
             +  + G   +   ++ Y     ++V+    +L   +L H+     D+  K + ++ M 
Sbjct: 302 QQALEYCGGKVRMATRMMYSRNKRSKVDEARDILAGVVLAHVPVPAYDFRQKCVYVAIMI 361

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKKEKSGTSAVLKES--- 395
            ++ H +    Q+D +D    + +   G L        + +L    K    AVL +S   
Sbjct: 362 RRILHAMVDPTQVDDKDYYGNKRLELAGQLLALLFEDCFKRLNADLKRQADAVLSKSNRA 421

Query: 396 ---DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
              DI    R  ++ + + + +++GN +  +      M+  G   + + ++R+ ++S   
Sbjct: 422 TQFDIIKCIRQDTLSNGLEHAISSGNWTVKRFR----MERKG---VTQVLSRLSFISALG 474

Query: 453 AVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIP 507
            + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     ++   E  P
Sbjct: 475 MMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEP 534

Query: 508 SKVLAQIPSVLVSLGMLPLTPVI-QSI--PEQALMVMLDGRIVGYILD--QIATSLVPKL 562
            + LA +      LG+ PL  ++ Q +  P  AL V L+G I+G   D  + A+      
Sbjct: 535 LRSLAHV------LGVEPLLLLVGQELHSPGSAL-VFLNGHILGVHQDPARFASDFRLLR 587

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------- 609
           R          +  E V +            +Y+ +  GR+ RP++              
Sbjct: 588 RRG--------RVGEFVSVHTTTG------NVYIASDGGRVCRPLLIVENGELLVKQVHL 633

Query: 610 -------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
                        L  G +E++   E+    I +   E  P  TTH E+     L   A 
Sbjct: 634 DALKAGRWTFNDFLTQGFVEYLDVNEENNSYIALYESEITPE-TTHLEIEPFTLLGVCAG 692

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           +IP P  NQSPRN YQC MGKQ MG    N   +    +Y L  P  P  +    + +  
Sbjct: 693 IIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIGY 752

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           D    G NA VAV+SY+GYD+EDA+++N++S +RGF    + +     ++     Y   T
Sbjct: 753 DRLGAGQNATVAVMSYSGYDIEDAIVMNRASLDRGFGRCIVLRKYGCTIKK----YSNRT 808

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
               V  +  Q             RH + DK              A+ +K+ P G VY+ 
Sbjct: 809 QDRIVPPTPAQTG--------PNGRHRLLDK----------DGIAAVGEKISP-GDVYIN 849

Query: 837 AKL--NERDPMYS--YWKESENRYVTCRYSGKE-EMCVEVVRMSSGFTEGGSVTPNCAYI 891
            +   N RDP+ +     +S  R     Y G + E CV V ++    ++ G     C   
Sbjct: 850 KQSPGNTRDPLPNPQAMPDSFYRPTAQSYKGPQGESCV-VDKVMLTTSDEGQFNVKCL-- 906

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             R  R P VGDKF+SR GQKG+C       DLPF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 907 -VRHTRRPEVGDKFSSRHGQKGVCGTIVEQSDLPFSERGICPDLIMNPHGFPSRMTVG 963



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 17/150 (11%)

Query: 745  KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            K  Y   F    +     + +E G++Y G + M+ G+ G  + A IF G V+YQ+L+HMV
Sbjct: 979  KFKYGTAFGGDTVTSLSEVLVEHGFSYNGKDLMHCGITGEPLVAYIFMGPVYYQKLKHMV 1038

Query: 805  SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK 864
             DK   +    R    +   +    DG + +G    ERD +  Y              G 
Sbjct: 1039 LDKMHARARGPRVVLTRQPTEGRARDGGLRLGEM--ERDCLIGY--------------GA 1082

Query: 865  EEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
              + +E + +SS   E   V  NC  +GY+
Sbjct: 1083 AMLILERLMISSDQFE-AQVCTNCGLLGYK 1111


>gi|71659679|ref|XP_821560.1| RNA polymerase I second largest subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70886943|gb|EAN99709.1| RNA polymerase I second largest subunit, putative [Trypanosoma cruzi]
          Length = 1591

 Score =  239 bits (611), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 190/640 (29%), Positives = 305/640 (47%), Gaps = 81/640 (12%)

Query: 364  SIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRA-SSIESAMTNFLATGNVSAG 422
            S + Q I+  G    +L   E SG    L++   Y   R+ +    A+   L TGN++  
Sbjct: 765  SHLFQSILQLG----ELPGNESSGVINQLRQYTDYCERRSINEPLDALHRLLITGNLTLD 820

Query: 423  KNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPV 482
            +       Q SG+V+MAE++N  R+    R +HRG    EMRSSE R+   +A+GFIC V
Sbjct: 821  REEDFYCPQTSGWVVMAEHLNFYRFFEQLRCLHRGKTIAEMRSSEVRKYPCEAFGFICMV 880

Query: 483  HTPDGTPCGLLNHLTTNCQISEYIPS------KVLAQIPSVLVSL---GMLP--LTPVIQ 531
            H+PDG  CG+LNH++ +  +SE +P+       +L++I      L   G L   +  ++ 
Sbjct: 881  HSPDGADCGVLNHMSVSTFVSESVPTGSRNEEDLLSRITEEFHGLRNGGSLDSLVDRLVG 940

Query: 532  SIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV--GEKIPKS-------------L 576
            ++P     V ++G+++GY+  + A  +   L   K +  G  +  S             +
Sbjct: 941  TVP-----VWVEGKMLGYLAPEEAERVCKALLRKKALKTGSSMELSGIVRRHSVNAFSMV 995

Query: 577  EIVYL----KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------IEWIGTFEQV 624
            E+VY+    K P+       GLY+F   GRM+RPV  + + +        + +IGT+EQ 
Sbjct: 996  EVVYVPPGNKDPQ-------GLYIFYDNGRMMRPVQQIESTSHGDELPFPLVYIGTWEQT 1048

Query: 625  FMDICITMKEAYPGITT------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
            ++DI     +   G+T         E + ++ LS  +  IP  + N SPRN++QC + KQ
Sbjct: 1049 WLDIASVPSDLLDGLTQLNRKYEFMEQNGSNILSLTSATIPFFEHNCSPRNLFQCGLSKQ 1108

Query: 679  TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
            + GT      ++   KL+R+  P     R +  D   +D+  +G NA++A+++YTGYD++
Sbjct: 1109 SAGTQLQTLAWRKEAKLFRMYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDLD 1168

Query: 739  DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            DA+ILN ++ + G     I  +  I   SG        ++  +   +   Q F   +   
Sbjct: 1169 DAVILNSTASQFGMLTAGITVAKVI-TASGKGEKDDVFVFQNL---LSNGQPFTPELDAH 1224

Query: 799  RLRHMVSDKWQTKDY-FGRDPANKALEDKLGPDGLVYVGAKLNER-DPMYSYWKESENRY 856
             L    +    T+   F  D     L D       VY  AK  ER DP+ +       R+
Sbjct: 1225 GLPRKRAVPGTTELLSFDSDHKYPTLRD----SSAVYCCAKRYERIDPLMNKKVYEYTRH 1280

Query: 857  VTCRY----SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
               ++     G+      VV +     +     P  A + +RI R   +GDKF+SR GQK
Sbjct: 1281 HVTKWWQFDKGENAWVHSVVPLKYDGPD-----PTSALVVFRIPRPTAIGDKFSSRHGQK 1335

Query: 913  GICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            G   +   A DLPF T  G+ PDI+ NPH FPSRMT+G +
Sbjct: 1336 GTLPLHIRAYDLPFSTRDGITPDIIINPHAFPSRMTVGMV 1375



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 33/46 (71%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYN YG E +  G+ G  M+A +F G+  YQRLRHMV+DKWQ +
Sbjct: 1415 KAGYNRYGREKLIDGISGEEMEADVFMGISGYQRLRHMVNDKWQAR 1460



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 169 PIMLKSKRCHLRNL-TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           P M++  RC LR + T        E   E GGYFI+ G E+++R L+  R N P+ I R 
Sbjct: 451 PEMVRGARCSLRGVDTRNDHFRAFEEQKEVGGYFIMRGGERILRALLMQRCNVPLNIFRE 510

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
            + ++G  FS   V IR  +       N  ++ T G   F F+ +
Sbjct: 511 RFSSQGPFFSPKAVVIRCKRPSGLTIQNYFYYATTGEVVFSFARK 555


>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score =  239 bits (611), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 261/972 (26%), Positives = 412/972 (42%), Gaps = 156/972 (16%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L       +L + D+ P   E Y K L + +   + S P       G 
Sbjct: 58  HLDSFNYFVDVDLKKIIKANELVLSDVDP---EFYLKYLDIRVGHKSSSPP-------GT 107

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V V ++   K       E+GR+PIML+S +C L  +  
Sbjct: 108 KEVNLAPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRMPIMLRSNKCILDGIDE 167

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
            ++ +  E P + GGYFIV G EK++ L+      + I ++ +  KN          + R
Sbjct: 168 HKMAQYDECPLDPGGYFIVNGTEKVI-LVQEQLSKNRIIVEADEKKNIVQASVTSSTHER 226

Query: 245 SVKRDESATNNVLHFVTNGSAR-----FMFSHRKSMCLLGMMQSL--------------H 285
             K      N+ ++   N  A       +         L ++Q +               
Sbjct: 227 KSKTYVITKNDKIYLKHNSIAEDVPIVIVLKAAGITSDLEILQLVCGQDPNYQDLFAVNF 286

Query: 286 EEG----IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWD 337
           EE     + TQ  +  + G+  K   +     L++++     +   I+ H+      + +
Sbjct: 287 EEAARLEVLTQQQALNYIGKRVKTIRRAGAPKLSQLQEGIEAVATTIIAHITVSDLQFRE 346

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA--- 390
           K L ++ MT ++   +     +D  D +  + +   G L    +  L KK  S   A   
Sbjct: 347 KALYIATMTRRVLMTMHNPKMVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDFKANID 406

Query: 391 -VLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
            VLK+    + F A        ++I   M   ++TGN S  +      M+ +G   +   
Sbjct: 407 KVLKKPSRTSEFDALLSINIHSNNITMGMNRAISTGNWSLKRFK----MERAG---VTHV 459

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L   
Sbjct: 460 LSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALM 519

Query: 500 CQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM---VMLDGRIVGYILDQ 553
             I+   E +P K L        +LG   +   I S    A+    V L+G ++G    +
Sbjct: 520 THITTDDEELPVKNLC------FTLGCENILE-IDSATLHAVTNFGVYLNGTLIGAT--R 570

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
              S V + R L+  G KI   + I Y     +       +++ T  GR+ RP++ + A 
Sbjct: 571 FPVSFVDRFRKLRRSG-KISAFVSI-YTNSHHRA------VHIATDGGRICRPLIIVDAE 622

Query: 614 N---------------------------IEWIGTFEQVFMDICITMKEAYPGIT----TH 642
           N                           +E++   E+   D  I + E     T    TH
Sbjct: 623 NKSRVKAHHLKKLLSNEWAFDDFLKHGLVEYLDVNEE--NDSLIALYEEDLKNTHQEFTH 680

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P 
Sbjct: 681 LEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQ 740

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P  +    + +D D  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    + +   
Sbjct: 741 QPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNT 800

Query: 763 IELESGYNYYGTETMYSGV----DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           I L+   N+  T+ + +G+    +G  + +    G      +   V +    + Y  +  
Sbjct: 801 ISLKRYPNH--TKDIVAGMRVDENGDPIFSHSSLGTDGLGEVGMQVEN---GQVYVNKCV 855

Query: 819 ANKALEDKLG-PDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
              A E  LG PD  V   A+ +   P Y              Y G E   V+ V MS G
Sbjct: 856 PTNAGESVLGSPDQHVQ-SAESHRETPAY--------------YKGPEPSYVDQVMMSVG 900

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             +   +      +  R  R P +GDKF+SR GQKG+C +    EDLPF D G+ PDI+ 
Sbjct: 901 DNDQALIK-----VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGISPDIIM 955

Query: 938 NPHGFPSRMTIG 949
           NPHGFPSRMT+G
Sbjct: 956 NPHGFPSRMTVG 967



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  MQA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1001 ILVDHGFNYSGKDMLYSGITGECMQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1060

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1061 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFE-V 1103

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1104 DVCSKCGLMGY 1114


>gi|268563827|ref|XP_002647022.1| Hypothetical protein CBG24045 [Caenorhabditis briggsae]
          Length = 1078

 Score =  239 bits (610), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 240/919 (26%), Positives = 389/919 (42%), Gaps = 158/919 (17%)

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
           +E R     YS P +V + ++   +        +GR+PIML+S +C LR+L   +L    
Sbjct: 16  SECRLRDMTYSAPISVDIEYTRGHQRVYKKDLVIGRMPIMLRSSKCILRDLAEEELARVQ 75

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN-RGLLFSDLG-----VYIRS 245
           E P + GGYF+V G EK++ L+      + I + RN+ K  +  + S         Y+  
Sbjct: 76  ECPHDPGGYFVVKGSEKVI-LIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTV 134

Query: 246 VKRDESATNNVLHFVTNGSARF-------------MFSHRKSMCLLGMMQSLHE---EGI 289
            K   S  +N L      S  F                H +   +    Q+L E    G+
Sbjct: 135 KKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKY-VSAFAQTLEECINAGV 193

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHL-----------NEVEICDYMLTNCILPHL----DD 334
           +TQ  +  +     K +       L            E E  D+ L+N ++ H+     +
Sbjct: 194 YTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTAPKEHEAVDF-LSNSMITHIACPDGN 252

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK---------EK 385
           +  K + L  MT +L     G  +LD  D    + +   GSL   L +          ++
Sbjct: 253 FKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKR 312

Query: 386 SGTSAVLKES----DIYAAFRASSIESAMTNFLATGN--VSAGKNSTLQLMQASGFVIMA 439
              +A++K      DI    R   I + + N ++TGN  +   +   L + Q        
Sbjct: 313 IADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQV------- 365

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
             ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L 
Sbjct: 366 --LSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLA 423

Query: 498 TNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQS---IPEQALMVMLDGRIVGYILD-Q 553
               I+     K + ++   L++ G+  L  V  S    PE  L + L+G ++G  +D +
Sbjct: 424 LISHITTDSDEKPVLRL---LLNSGVEDLHNVHFSHVNKPENTL-IFLNGVLIGTAVDPE 479

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
                V  LR   ++ E +  S  +               +++ +  GR+ RP + +  G
Sbjct: 480 RVVKAVRDLRRSGLLSEFVSVSRSMTN-----------RSVFISSDGGRLCRPYIIVRHG 528

Query: 614 -------NIEWIGTFEQVFMDICI----------TMKEAYPGI--------TTHRELSKT 648
                  +++ +   +++F D              M +A   +        TTH E+   
Sbjct: 529 KPMLTETHVQELKEGKRIFEDFVDDGIVEYLDVNEMNDALIAVYENEIGAETTHLEIEPF 588

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
             L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y L  P  P  + 
Sbjct: 589 TLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKS 648

Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
              +  + +  P G N I+AV+SY+GYD+EDA++LNK+S +RG+    ++K +       
Sbjct: 649 KTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHV------- 701

Query: 769 YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
               GT   Y                  Y RL     D    K  F            L 
Sbjct: 702 ---KGTAKKYPNQT--------------YDRLLGPAVDSVTLKPIFK--------HKNLD 736

Query: 829 PDGLVYVGAKL-------NERDPMYSYWKESENRYVTCRYSGKE----EMCVEVVRMSSG 877
            +G+V+ GA++       N+  P+ S    S     T   +G++    ++ +     +  
Sbjct: 737 QEGIVFTGARILPKQTIINKYMPVVSAESGSAASANTIGIAGRDVAYKDVSITYKTPTPS 796

Query: 878 FTEGGSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
           + E   +T N        +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+V
Sbjct: 797 YAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMV 856

Query: 933 PDIVFNPHGFPSRMTIGFL 951
           PD++ NPHG+PSRMT+G L
Sbjct: 857 PDMIMNPHGYPSRMTVGKL 875



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYNY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 912 GYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGR 971

Query: 828 GPDGLVYVGAKLNERDPMYSY 848
             +G + +G    ERD + +Y
Sbjct: 972 SREGGLRLGEM--ERDCLIAY 990


>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
           guilliermondii ATCC 6260]
          Length = 1156

 Score =  239 bits (610), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 247/985 (25%), Positives = 407/985 (41%), Gaps = 182/985 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF+F +D  L       +L + D+ P   + Y K L + +   + S P       G 
Sbjct: 56  HLDSFNFFVDVDLKKIVQANELVLSDVDP---DFYLKYLDIRVGHKSTSSP-------GT 105

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V V ++   K       E+GR+PIMLKS +C L  +  
Sbjct: 106 KEVILPPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRMPIMLKSNKCILDGIND 165

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV---------RLLI-----------------NNRR 218
            Q+ +  E P + GGYFIV G EK++         R+++                 + R+
Sbjct: 166 HQMAKLDECPIDPGGYFIVNGTEKVILIQEQLSKNRIIVEADEKKGIVQASVTSSTHERK 225

Query: 219 NHPIAIKRNA--WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
           +    I +N   +     +  D+ + I       ++   +L  V   + ++     + + 
Sbjct: 226 SKTYVITKNEKIYLKHNSIGEDVPIVIILKAAGITSDLEILQLVCGSNPQY-----QDLF 280

Query: 277 LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DD 334
            +   ++   E + TQ  +  + G+  K   +     L++++     +   I+ H+  DD
Sbjct: 281 AVNFEEAARLE-VFTQQQALNYVGKRVKTVRRAGAPKLSQLQEGIEAIATTIIAHITVDD 339

Query: 335 --YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGT 388
             + +K L ++ M  ++   +     +D  D +  + +   G L    +  L KK  S  
Sbjct: 340 LQFREKALYIAMMARRVLMTMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDF 399

Query: 389 SAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMA 439
            A + +  +    RA   ++ ++  + + N++ G N  +           M+ +G   + 
Sbjct: 400 KANI-DKILKKPSRALEFDALLSINIHSNNITMGMNRAISTGNWSLKRFKMERAG---VT 455

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
             ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L 
Sbjct: 456 HVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 515

Query: 498 TNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSI--PEQALMVMLDGRIVGYILD 552
               I+   E  P ++      V  +LG   +  V  +    +    + L+G I+G    
Sbjct: 516 LMTHITTDDEEEPIRL------VCFALGCEDILEVDSATLHADGNFGIYLNGTIIGTT-- 567

Query: 553 QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---- 608
           +     V   R L+  G+  P     ++    +        + + T  GR+ RP++    
Sbjct: 568 RFPAQFVGNFRALRRSGKVSP--FISIHTNTHQNA------VQIATDGGRVCRPLIIVDS 619

Query: 609 ----NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT--------------------THRE 644
               N+ A +++ +   E VF D        Y  +                     TH E
Sbjct: 620 KNKANVKAVHLKKLMAGEWVFEDFIKHGLVEYLDVNEENDSFIALYERDLEANQNITHLE 679

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P
Sbjct: 680 IEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYLMVYPQQP 739

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             +    + +D D  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    + +   + 
Sbjct: 740 MVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVN 799

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+   N+  T+ + SG+        IF                                 
Sbjct: 800 LKRYPNH--TKDVVSGMRVDEQGEPIF-------------------------------PH 826

Query: 825 DKLGPDGLVYVGAK--------------------LNERDPMYSYWKESENRYVTCRYSGK 864
             LGPDGL  VG K                    L   +P +    ES +R     Y G 
Sbjct: 827 ASLGPDGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQQNVES-HRETPAYYRGP 885

Query: 865 EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
           E   ++ V MS    +   +      +  R  R P +GDKF+SR GQKG+C +    EDL
Sbjct: 886 EPSYIDQVMMSVSDNDQTLIK-----VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDL 940

Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIG 949
           PF D G+VPDI+ NPHGFPSRMT+G
Sbjct: 941 PFNDDGIVPDIIMNPHGFPSRMTVG 965



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 999  ILVKNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1058

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1059 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFE-V 1101

Query: 883  SVTPNCAYIGY 893
             V  NC  +GY
Sbjct: 1102 DVCNNCGLMGY 1112


>gi|402076059|gb|EJT71482.1| hypothetical protein GGTG_10739 [Gaeumannomyces graminis var.
           tritici R3-111a-1]
          Length = 1158

 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 245/913 (26%), Positives = 375/913 (41%), Gaps = 139/913 (15%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N+  P E R     Y+ P  V +A+  D K        +GR+PIMLKS +C L   T ++
Sbjct: 102 NEVSPMECRLRDMTYAAPIKVDIAYFRDKKKVIRRNVTLGRMPIMLKSSQCWLSGATNSE 161

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           + +  E P + GGYFI+ G EK+            I I+    KNR ++ +D    I + 
Sbjct: 162 MEDMNECPLDPGGYFIINGTEKV------------ILIQEQLSKNRVIVEADEKNNIITA 209

Query: 247 KRDESA-TNNVLHFVTNGSARFMFSHRK---------SMCLLG------MMQSLHEEGIH 290
               S        +VT    R   +H            +  LG      +MQ +  E   
Sbjct: 210 SVTSSTHERKSKTYVTLKKERISLNHNTLVEPIPIVIVLKALGGLPDYEIMQLVAGEDAR 269

Query: 291 TQHDSKVFFGQIFK-------EKLQY------------------DLRHLNEVEICDYMLT 325
            Q D  V F +  +       + L+Y                   +   N  E     L 
Sbjct: 270 YQDDFAVNFDEATRAGVFTQHQALEYVGVRVKAGSIRTKMPGSGGMARRNNTEEGLEALA 329

Query: 326 NCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS----LY 377
           N I+ H+     D++ K + ++ M  ++    Q    +D  D +  + +   G     L+
Sbjct: 330 NMIIGHVPIVGLDFYPKAIYVAMMVRRVLMAAQDFKLVDDRDFVGNKRLELAGQMLSLLF 389

Query: 378 LQLLKK----EKSGTSAVLKESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL- 429
             L KK     +     VL++S+    F   +  +A +  +  G   ++S+G  S  +  
Sbjct: 390 EDLFKKFITDLRFNIDKVLRKSNRGVPFDPLNSITATSGHITAGMNRSISSGNWSVKRFN 449

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDG 487
           M  +G   +   ++R+ Y+S    + R  S F++ R  S PR L+   WG +C   TP+G
Sbjct: 450 MNRAG---VTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEG 506

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
             CGL+ +L     I+   P + + Q    L S G   L     S   +    M++    
Sbjct: 507 EACGLVKNLAMMTHITTQFPEEPVKQWILSLDS-GAESLINFSGSEMHRPGSYMVNVNGT 565

Query: 548 GYILDQIATSLVPKLRMLKIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
            + L         K R ++  G   P  S+ I Y          +  + + T  GR+ RP
Sbjct: 566 PFALTANPEEFARKFRTMRRRGFLSPFVSININYH---------FSTVNIATDEGRICRP 616

Query: 607 ---VMN-----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
              V N                       L  G +E++   E+    + +  K+  P   
Sbjct: 617 YIIVQNGVPNVRDEHLEMLRQGRAQFDDFLNKGIVEYLDVNEENDTLVALYEKDVTPA-H 675

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  
Sbjct: 676 THLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVY 735

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
           P  P       + +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+ 
Sbjct: 736 PQRPMVISKTIELIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRK 795

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
              EL++  N    E     +D +  +        H  +   +  D   T  Y  R  A 
Sbjct: 796 HTAELQTYANNRSEEIGRPEIDEATGR--------HTDKNVAIDGDGLATVGY--RIHAG 845

Query: 821 KALEDKLGP--DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
           + +  KL P   G   +G  +   D           R  +  Y   +   ++ V +S   
Sbjct: 846 EVMIKKLTPIDQGSTGIGNDVGSND----------YRDTSISYRTPDPSYIDKVMVSQ-- 893

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
           TE   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF DSGLVPDI+ N
Sbjct: 894 TEKEHI---LVKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFQDSGLVPDIIMN 950

Query: 939 PHGFPSRMTIGFL 951
           PHGFPSRMT+G L
Sbjct: 951 PHGFPSRMTVGKL 963



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 23/152 (15%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E+ + +G  F++  +E      +  G+++ G +   SG+ G  ++A IF G ++YQRL+H
Sbjct: 977  EKRYGYGDAFRTHPVEEMGEALVRHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKH 1036

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    R    +   +    DG + +G    ERD + +Y              
Sbjct: 1037 MVQDKMHSRAKGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY-------------- 1080

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            G  ++ +E + +SS  T    +   C   GY+
Sbjct: 1081 GASQLLLERLMLSSDAT-SIDICQRCGLFGYK 1111


>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 259/972 (26%), Positives = 412/972 (42%), Gaps = 156/972 (16%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +D  L       +L + D+ P   E Y K L + +   + S P       G 
Sbjct: 58  HLDSFNYFVDVDLKKIIKANELVLSDVDP---EFYLKYLDIRVGHKSSSPP-------GT 107

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V V ++   K       E+GR+PIML+S +C L  +  
Sbjct: 108 KEVNLAPHECRLRDLTYSAPIYVDVEYTRGRKIIMHKDLEIGRMPIMLRSNKCILDGIDE 167

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
            ++ +  E P + GGYFIV G EK++ L+      + I ++ +  KN          + R
Sbjct: 168 HKMAQYDECPLDPGGYFIVNGTEKVI-LVQEQLSKNRIIVEADEKKNIVQASVTSSTHER 226

Query: 245 SVKRDESATNNVLHFVTNGSAR-----FMFSHRKSMCLLGMMQSL--------------H 285
             K      N+ ++   N  A       +         L ++Q +               
Sbjct: 227 KSKTYVITKNDKIYLKHNSIAEDVPIVIVLKAAGITSDLEILQLVCGQDPNYQDLFAVNF 286

Query: 286 EEG----IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWD 337
           EE     + TQ  +  + G+  K   +     L++++     +   I+ H+      + +
Sbjct: 287 EEAARLEVLTQQQALNYIGKRVKTIRRAGAPKLSQLQEGIEAVATTIIAHITVSDLQFRE 346

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA--- 390
           K L ++ MT ++   +     +D  D +  + +   G L    +  L KK  S   A   
Sbjct: 347 KALYIATMTRRVLMTMHNPKMVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDFKANID 406

Query: 391 -VLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
            VLK+    + F A        ++I   M   ++TGN S  +      M+ +G   +   
Sbjct: 407 KVLKKPSRTSEFDALLSINIHSNNITMGMNRAISTGNWSLKRFK----MERAG---VTHV 459

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L   
Sbjct: 460 LSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALM 519

Query: 500 CQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM---VMLDGRIVGYILDQ 553
             I+   E +P K L        +LG   +   I S    A+    + L+G ++G    +
Sbjct: 520 THITTDDEELPVKNLC------FTLGCENILE-IDSATLHAVTNFGIYLNGTLIGAT--R 570

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
              S V + R L+  G KI   + I Y     +       +++ T  GR+ RP++ + A 
Sbjct: 571 FPVSFVDRFRKLRRSG-KISAFVSI-YTNSHHRA------VHIATDGGRICRPLIIVDAE 622

Query: 614 N---------------------------IEWIGTFEQVFMDICITMKEAYPGIT----TH 642
           N                           +E++   E+   D  I + E     T    TH
Sbjct: 623 NKSRVKAHHLKKLLSNEWAFDDFLKHGLVEYLDVNEE--NDSLIALYEEDLKNTHQEFTH 680

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P 
Sbjct: 681 LEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYLMVYPQ 740

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P  +    + +D D  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    + +   
Sbjct: 741 QPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNT 800

Query: 763 IELESGYNYYGTETMYSGV----DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           I L+   N+  T+ + +G+    +G  + +    G      +   V +    + Y  +  
Sbjct: 801 ISLKRYPNH--TKDIVAGMRVDENGEPIFSHSSLGTDGLGEVGMQVEN---GQVYVNKCV 855

Query: 819 ANKALEDKLG-PDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
              A E  LG PD  V   A+ +   P Y              Y G E   ++ V MS G
Sbjct: 856 PTNAGESVLGSPDQHVQ-SAESHRETPAY--------------YKGPEPSYIDQVMMSVG 900

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             +   +      +  R  R P +GDKF+SR GQKG+C +    EDLPF D G+ PDI+ 
Sbjct: 901 DNDQALIK-----VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDDGITPDIIM 955

Query: 938 NPHGFPSRMTIG 949
           NPHGFPSRMT+G
Sbjct: 956 NPHGFPSRMTVG 967



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  MQA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1001 ILVDHGFNYSGKDMLYSGITGECMQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1060

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1061 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMLSSDAFE-V 1103

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1104 DVCSKCGLMGY 1114


>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
           gorilla gorilla]
          Length = 1097

 Score =  239 bits (609), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 250/903 (27%), Positives = 375/903 (41%), Gaps = 177/903 (19%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 97  PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 156

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
            L E  E P + GGYFI+ G EK++           IA ++ A            VY+ +
Sbjct: 157 DLCELNECPLDPGGYFIINGSEKVL-----------IAQEKMATNT---------VYVFA 196

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE 305
            K  + A           S+R   +   SM   G            Q   K   GQ    
Sbjct: 197 KKDSKYAYTGECRSCLENSSRPTSTIWVSMLARG-----------GQGAKKSAIGQRIVA 245

Query: 306 KLQYDLRHLNEVEI---CDYMLTNCILPHLD-DYWDKFLC--LSHMTCKLFHVVQGMVQL 359
            L Y  + +  + +     ++    IL H+  D+ D  +   + +M  +L     G  +L
Sbjct: 246 TLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVIYMVHRLLLAALGRREL 305

Query: 360 DSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYA--------------AFRASS 405
           D  D    + +   G L   L +        +LKE  IYA              A +   
Sbjct: 306 DDRDHYGNKRLDLAGPLLAFLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRI 362

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQE 462
           I   +   LATGN    K +     QA   V  ++ +NR+ +   +SH R ++     ++
Sbjct: 363 ISDGLKYSLATGNWGDQKKA----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRD 415

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSL 521
            + ++PRQL    WG +CP  TP+G   GL+ +L     IS    PS +L      L   
Sbjct: 416 GKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEW 471

Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYL 581
            M  L  +  +    A  + ++G  VG   D     L+  LR L+   + I   + ++  
Sbjct: 472 SMENLEEISPAAIADATKIFVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRD 529

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNL-----------------------------AA 612
            R  +       + ++T  GR+ RP++ +                             A+
Sbjct: 530 IRERE-------IRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVAS 582

Query: 613 GNIEWIGTFEQVFMDICITMKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
           G +E+I T E+  + + +T  +      AY    TH E+  +  L   A++IP PD NQS
Sbjct: 583 GVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQS 642

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRN YQ  MGKQ MG    N+  +     + L  P  P       + L     P G N+I
Sbjct: 643 PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSI 702

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VA+ SYTGY+ ED++I+N+S+ +RGF     F+S+F      Y  Y  +    G D    
Sbjct: 703 VAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD---- 747

Query: 787 QAQIFFGVVHY--QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD- 843
           Q ++F        Q +RH                   A+ DKL  DGL+  G +++  D 
Sbjct: 748 QEEVFEKPTRETCQGMRH-------------------AIYDKLDDDGLIAPGVRVSGDDV 788

Query: 844 --------PMYSYWKESENRYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------C 888
                   P      ES NR    RY+ ++  C   +R S +G  +   VT N      C
Sbjct: 789 IIGKTVTLPENEDELESTNR----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFC 842

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
             I  R  R P +GDKFASR GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTI
Sbjct: 843 K-IRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTI 901

Query: 949 GFL 951
           G L
Sbjct: 902 GHL 904



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 942 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 985


>gi|156839387|ref|XP_001643385.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113993|gb|EDO15527.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1139

 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 259/1003 (25%), Positives = 417/1003 (41%), Gaps = 181/1003 (18%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD       DK N    FL   G    H+ SF++ +D  L        L + D+ P 
Sbjct: 25  KKLTDA-VSTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDP- 82

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             E Y K + + I + + S  K    P         P E R     YS P  V + ++  
Sbjct: 83  --EFYLKYVDIRIGQRSSSSSKDYLTP---------PHECRLRDMTYSAPIYVDIEYTRG 131

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
                    E+GR+PIML+S +C L     + + +  E P + GGYFIV G EK++ L+ 
Sbjct: 132 RNIIMHKDVEIGRMPIMLRSNKCILNGADDSMMAKLNECPLDPGGYFIVNGTEKVI-LVQ 190

Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF------- 267
                + I ++ +  K           + R  K      N  ++   N  A         
Sbjct: 191 EQLSKNRIIVEADEKKEIVQASVTSSTHERKSKTYVVTKNGKIYLKHNSIAEEVPIAIVL 250

Query: 268 ----MFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQYDL 311
               + S  + M L+    S +++             I+TQ  +  + G   K   +  L
Sbjct: 251 KACGIISDLEIMQLVCGNDSSYQDIFAVNLEEAAKYNIYTQRQALEYIGGKVKTIRRQKL 310

Query: 312 RHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
             L E +E     +   ++ HL     D+ +K L ++ M  ++   +     +D  D + 
Sbjct: 311 SILQEGIE----AIATTVIAHLTVEALDFREKALYVAMMARRVVMAMHNPKMVDDRDYVG 366

Query: 367 LQEIMTGGSL----YLQLLKKE----KSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
            + +   G L    +  L KK     K+    VLK+ +     RA   ++ ++  + + N
Sbjct: 367 NKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPN-----RAMEYDALLSINVHSNN 421

Query: 419 VSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
           +++G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S 
Sbjct: 422 ITSGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSG 478

Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGML 524
           PR L+   +G +C   TP+G  CGL+ +L     I+   E  P K L  +      LG+ 
Sbjct: 479 PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKNLCFV------LGVE 532

Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
            +  V  +       V L+G ++G I  +     V + R L+  G K+ + + I Y    
Sbjct: 533 NICLVDSATLHLNYTVHLNGTLIGTI--RFPARFVSQFRHLRRTG-KVSEFISI-YTNSH 588

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEWI 618
           ++       +++ T  GR+ RP++ + AG                           +E++
Sbjct: 589 QRA------VHIATDGGRICRPLIIVTAGKSHVNAEHLKELLEGKLVFDDFLKLGLVEYL 642

Query: 619 GTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
              E+    I +  K+    +T H E+     L  +A LIP P  NQSPRN YQC MGKQ
Sbjct: 643 DVNEENDSFIALYEKDINENVT-HMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 701

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
            +G    N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD+E
Sbjct: 702 AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 761

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           DA++LNKSS +RGF      +     L+   N+  T+ +  G+                 
Sbjct: 762 DALVLNKSSIDRGFGRCETRRKTTTVLKKYPNH--TQDIIGGM----------------- 802

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK-------LNERDPMYS---- 847
           R+       WQ               + LGPDGL  VG +       +N+  P  S    
Sbjct: 803 RVDENGKPIWQ--------------HEPLGPDGLGEVGVQVTSGQIYINKSVPTNSGEGV 848

Query: 848 -YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFA 906
               +++ +     Y   E   ++ V MS    +   +      +  R  R P +GDKF+
Sbjct: 849 LANTQAQYKETPVIYRAPEPSRIDQVMMSVSDNDQALIK-----VLLRQNRRPELGDKFS 903

Query: 907 SRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           SR GQKG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 904 SRHGQKGVCGIIVNHEDMPFNDDGISPDIIMNPHGFPSRMTVG 946



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 980  ILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1039

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1040 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1082

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1083 DVCDKCGLMGY 1093


>gi|118358942|ref|XP_001012712.1| DNA-directed RNA polymerase, beta subunit family protein
           [Tetrahymena thermophila]
 gi|89294479|gb|EAR92467.1| DNA-directed RNA polymerase, beta subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 1141

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 259/982 (26%), Positives = 418/982 (42%), Gaps = 164/982 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEPKVPAGPVGIHFNK-- 128
           HI SF++ ++  L   +      E  +    +  L   K  I  P         H NK  
Sbjct: 29  HIQSFNYFINIKLQQIITSSMNKELRLDTDNSFLLEYTKIYIEPPA--------HDNKTM 80

Query: 129 YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK-EVGRVPIMLKSKRCHL-RNLTPAQ 186
             P EAR + S Y+G   V    +++GK   +  K  +G++PIML S  C+L + L   Q
Sbjct: 81  MLPQEARLSNSSYAGNIYVDCELTFNGKKEDSLRKVNIGKMPIMLGSSHCNLIKALELGQ 140

Query: 187 LIERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIA--IKRNAWKNRG-- 233
           + +  E  ++  GYFI+ G EK+          R+ I   +N  +   +K N    +   
Sbjct: 141 VHKLQECANDPRGYFIIKGVEKVFLIQEQLADNRIFIEEDKNKELVANVKSNTVDTKSIT 200

Query: 234 -LLFSDLGVYIRSVKRDESATNNVLHFVTNG--SARFMFS---------HRKSMCLLGMM 281
            L+  +  +Y++ V         ++ F   G  S + +F          +R ++CL  + 
Sbjct: 201 SLIIKNHKIYVK-VSSFSKPIPLLIFFKAYGVESEQEIFQLIGTEEHLLNRLALCLEDIE 259

Query: 282 QSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRH--LNEVEICDYMLTNCILPHLD----DY 335
           QS     ++TQ  +  +  +  + K   D ++   N V+    ++TN +L H+     +Y
Sbjct: 260 QS----QVYTQQQALEYLSKRLRPKTFQDKKYSSRNPVDEARDIITNVVLCHIPCKNYNY 315

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL------------KK 383
           + + + L  M  +L   +    ++D  D    + +   G  YL+LL            +K
Sbjct: 316 YPRAIFLGLMARRLIEALDDPSKIDKRDYYGNKRMKCAG-WYLELLFEDKFKQFNMMVRK 374

Query: 384 EKSGTSAVLKESDIYAAFRASSIESAMTNFLATG--NVSAGKNSTLQLMQASGFVIMAEN 441
           E S      K        R  SI     + +  G  N  +  N T++  +    V + + 
Sbjct: 375 ELSKEIEKHKNKSYPIKNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDT-VGVTQV 433

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           + R+ Y++    + R  S F++ R  + PR L    WG +CP  TPDG  CGL  +L+  
Sbjct: 434 LARISYIAAIGMMTRMNSQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLM 493

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI--PEQALMVMLDGRIVGYILDQIATS 557
             I+      VL+ I    ++LGM  +          ++  MV L+G+I+G   D    +
Sbjct: 494 AHITIEEKKNVLSTIA---LNLGMEDIGHYSSGEIHEDKNYMVFLNGQIIGMHRD--PEA 548

Query: 558 LVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--- 614
              KLR ++  G KI  ++ I      EK       +YL T  GR+ R ++ +  G    
Sbjct: 549 FAQKLRFMRRRG-KIGTTISIS--TNSEK-----RAVYLDTDDGRLCRLLIVVENGKPLI 600

Query: 615 -----------------------IEWIGTFEQVFMDICITMKEAYP--GITTHRELSKTD 649
                                  IE+I   E+    I I  +E  P    TTH E+    
Sbjct: 601 TNDHLNDLKEKRKSYLDLIRMGLIEYIDVNEEDNCYIAIK-QEDIPNRSKTTHMEIDPLT 659

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L  ++ L+P P  NQ+ RN +QC MGKQ +G        +    LY+L  P +P  +  
Sbjct: 660 LLGVVSGLVPYPHHNQASRNTFQCAMGKQALGIIGSTSMNRVDTILYQLIYPQTPLLKTK 719

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             +    D FP G NA +AV+SY+GYD+EDA +LNKSS +RGF    +FK    E++   
Sbjct: 720 VIEYAGYDKFPAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYETEIQK-L 778

Query: 770 NYYGTETMYSG----VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
              G   +  G     +GS            Y++ ++ V  K      FG      AL+D
Sbjct: 779 KMSGLTELLRGPPKEAEGS------------YKKKQNRVLKK------FG------ALDD 814

Query: 826 KLGPDGLVYVGAKLNERDPMYSYW----------------KESENRYVTCRYSGKEEMCV 869
               DG   VGA +N  D +++ +                  S + Y+    + K +   
Sbjct: 815 ----DGTPIVGASINNGDVLFNKYTPLLTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLA 870

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
            + R+     +G  +         R  R P  GDKF+SR GQKGI  +    ED+PF++ 
Sbjct: 871 RIDRVIRSQQDGNVIIKTIV----RETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSEK 926

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G VPD++ NPHG+PSRMT+G L
Sbjct: 927 GWVPDLIMNPHGYPSRMTVGKL 948



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            I +++G++Y G + + SG+ G  MQ  +F G V YQRL+HMV+DK   +
Sbjct: 980  ILVQNGFSYTGKDVIISGITGEYMQCYVFCGPVFYQRLKHMVADKVHAR 1028


>gi|25144348|ref|NP_498192.2| Protein RPC-2 [Caenorhabditis elegans]
 gi|351060666|emb|CCD68383.1| Protein RPC-2 [Caenorhabditis elegans]
          Length = 1154

 Score =  238 bits (607), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 254/999 (25%), Positives = 412/999 (41%), Gaps = 198/999 (19%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  + E +   +     I  +       L  +   I +P    G + +  +K  P
Sbjct: 45  HLVSFDHFVQEEIRSIMLSNQKITSDA-NPNFYLKYLDIRIGKPSSEEG-LNMTHDKITP 102

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE--VGRVPIMLKSKRCHLRNLTPAQLIE 189
            E R     YS P +V + ++   +    F K+  +GR+PIML+S +C LR+L   +L  
Sbjct: 103 QECRLRDMTYSAPISVDIEYTRGNQR--VFKKDLIIGRMPIMLRSSKCILRDLAEEELAR 160

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
             E P + GGYF+V G EK++ L+      + I + RN+ K       +L   + S   +
Sbjct: 161 VQECPYDPGGYFVVKGSEKVI-LIQEQLSKNRIMVGRNSSK-------ELQCEVLSSTSE 212

Query: 250 ESATNNVLHFVTNGSARFMFSHRK-------SMCLLGM---------------------- 280
             +      +VT    ++   H +       S+    M                      
Sbjct: 213 RKSKT----YVTMKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAF 268

Query: 281 MQSLHEE---GIHTQHDSKVFFGQIFKEKLQYDLRHL-----------NEVEICDYMLTN 326
            Q+L E    G++TQ  +  +     K +       L            E E  D+ L+N
Sbjct: 269 AQTLEESINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVDF-LSN 327

Query: 327 CILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
            ++ H+     ++  K + L  MT +L     G   LD  D    + +   GSL   L +
Sbjct: 328 SMITHIACPDGNFKMKAIYLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLLSLLFE 387

Query: 383 K---------EKSGTSAVLKES----DIYAAFRASSIESAMTNFLATGN--VSAGKNSTL 427
                     ++   +A++K      DI    R   I + + N ++TGN  +   +   L
Sbjct: 388 DVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERL 447

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTP 485
            + Q          ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP
Sbjct: 448 GVTQV---------LSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTP 498

Query: 486 DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQS---IPEQALMVML 542
           +G  CGL+ +L     I+     K + ++   L++ G+  L  V  S    PE  L + L
Sbjct: 499 EGEACGLVKNLALISHITTDSDEKPVLRL---LLNSGVEDLHNVHFSHVNKPENTL-IFL 554

Query: 543 DGRIVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           +G ++G  +D +     V  LR   ++ E +  S  +               +++ +  G
Sbjct: 555 NGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSLTNR-----------SVFISSDGG 603

Query: 602 RMLRP---VMN----LAAGNIEWIGTFEQVFMD-------------------ICITMKEA 635
           R+ RP   V N    L   +++ +   + +F D                   I +  +E 
Sbjct: 604 RLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDDGIVEYLDVNEMNDALIAVYGREI 663

Query: 636 YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
            P  TTH E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +
Sbjct: 664 GPE-TTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIM 722

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           Y L  P  P  +    +  + +  P G N I+AV+SY+GYD+EDA++LNK+S +RG    
Sbjct: 723 YLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRG---- 778

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
                           YG   +Y  V G+  +    +    + RL     D    K  F 
Sbjct: 779 ----------------YGRCLVYKHVKGTAKK----YPNQTFDRLLGPALDPNTRKPIFK 818

Query: 816 RDPANKALEDKLGPDGLVYVGAKL-------NERDPMYS----------------YWKES 852
                      L  +G+V+ GA++       N+  P+ S                  ++ 
Sbjct: 819 --------HKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQV 870

Query: 853 ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
           + + V+  Y        E V ++    E      +   +  R  R P +GDKF+SR GQK
Sbjct: 871 DYKDVSITYKTPTPSYAERVLLTYNEDEA-----HLFKVLLRQTRRPELGDKFSSRHGQK 925

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G+C +    ED+PF D G+VPD++ NPHG+PSRMT+G L
Sbjct: 926 GVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKL 964



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 1001 GYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGR 1060

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              +G + +G    ERD + +Y
Sbjct: 1061 SREGGLRLGEM--ERDCLIAY 1079


>gi|345498326|ref|XP_001607116.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Nasonia vitripennis]
          Length = 1135

 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 249/961 (25%), Positives = 417/961 (43%), Gaps = 143/961 (14%)

Query: 72  HIASFDFMLDEGLDLAVE-------DIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           HI SF++ ++  +   V+       D  P+    Y K L ++I    I E    + P   
Sbjct: 47  HIDSFNYFINVEIKKIVKANEKVLSDADPL---FYVKYLNVSIGTPDIEEGFSVSRPTT- 102

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + +    +        +GR+PIML+S  C L   + 
Sbjct: 103 ------PHECRLRDLNYSAPITVDIEYMRGHQPIIRNNLLIGRMPIMLRSSNCVLSEKSN 156

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRL---LINNR-------RNHPIAIKRNAWKNRGL 234
            +L +  E P + GGYFI+ G EK++ +   ++ NR       +N  +A   +A + R  
Sbjct: 157 FELAKMNECPHDPGGYFIINGQEKVILIQEQMLRNRIILEEDNKNCIVASCNSATQERKT 216

Query: 235 LFSDLG----VYIR-SVKRDESATNNVLHFVTNGSA------RFMFSHRKSMCLLGM-MQ 282
             + +G     Y+R ++ +D+     V+ F   G        + + +    M  +G  ++
Sbjct: 217 KTNVIGRAGKYYLRHNIFQDDIPV--VIIFKAMGIVCDQEIVQLIGTEENFMKKIGASLE 274

Query: 283 SLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI--LPHLD-DYWDKF 339
             H   I  Q+ +  + G   K+K    ++     E+ D + +N +  +P +D ++  K 
Sbjct: 275 ECHALNIVAQNQALKYLGNKRKQKRFTVVKSSITDEMKDVLASNILSHVPVIDFNFKLKA 334

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKS 386
             L+ M  K+         +D  D    + +   GSL    +  L K+         +K+
Sbjct: 335 TYLALMVRKVMIAQTDGKLVDDRDYYGNKRLELAGSLLALMFEDLFKRFNWDLKTIADKN 394

Query: 387 GTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
                  + DI    R  SI + +   +++GN +  +      M+  G   + + ++R+ 
Sbjct: 395 IPKIKAAQFDIVKHMRHDSITNGLAVAISSGNWTIKRFK----MERHG---VTQVLSRLS 447

Query: 447 YMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
           Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+ 
Sbjct: 448 YISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITT 507

Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
            I  + + ++     +LG+  +  +   +   +   MV L+G I+G + +     LV   
Sbjct: 508 EIEEEPIMRLA---FNLGVENVNILGGEEINNKDVYMVFLNGNILGIVKNYY--RLVTVF 562

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------- 609
           RML+  G  +      +Y +   +       + + +  GR+ RP +              
Sbjct: 563 RMLRRKG--LVNQFVSIYPQHQHRC------VQISSDGGRLCRPYIIVEHCQPLVKAEHI 614

Query: 610 -------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
                        L  G IE++   E+    I  +      GIT H E+     L   A 
Sbjct: 615 KLLEQGVRSFEDFLHDGTIEYLDVNEENDSFIAFSESHIKEGIT-HLEIEPFTLLGVCAG 673

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           L+P P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P +P  +    + ++ 
Sbjct: 674 LVPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYNLVYPHAPMVKTKTIELINF 733

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           D  P G NAIVAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    L+   N      
Sbjct: 734 DKLPAGQNAIVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNAKCVLKKYANQTCDRI 793

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLR---HMVSDKWQTKDYFGRDPANKALEDKLGPD--- 830
           M + VD +  +      ++  + +     MVS+K             K + +K  P    
Sbjct: 794 MPASVDATTKKPIWQHDIIDGEGIAAPGEMVSNK-------------KVMVNKSTPSANT 840

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
           G V  G++            ++E +     Y       +E V +SS   +   +      
Sbjct: 841 GPVTTGSQ-----------AQTEYKNANLVYKNPVPAYIEKVMISSNAEDAYLIK----- 884

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
           +  R  R P +GDKF+SR GQKG+  +    ED+PF DSG+ PD++ NPHGFPSRMT+G 
Sbjct: 885 LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDSGICPDMIMNPHGFPSRMTVGK 944

Query: 951 L 951
           L
Sbjct: 945 L 945



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      +  GYNY G +  YSG+ G  +QA I+ G V+YQ+L+HMV 
Sbjct: 960  FHYGTAFGGSKVEDVCEELVSQGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQ 1019

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            DK   +    R    +   +    DG + +G    ERD +  Y
Sbjct: 1020 DKMHARARGPRAVLTRQPTEGRSKDGGLRLGEM--ERDCLIGY 1060


>gi|399216789|emb|CCF73476.1| unnamed protein product [Babesia microti strain RI]
          Length = 1146

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 248/936 (26%), Positives = 384/936 (41%), Gaps = 172/936 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P   R     YS P  V V ++           E+GR+P+MLKS  C L      +L + 
Sbjct: 77  PNICRIRDLTYSAPIYVDVEYTRGSDIIRKQNAEIGRLPVMLKSAICSLEGKDELELQKL 136

Query: 191 GEHPDEWGGYFIVGGHEK-------------------LVRLLINNRRNH---PIAIKRNA 228
           GE P + GGYFI+ G EK                   L++  IN    +    I I+   
Sbjct: 137 GECPHDPGGYFIIKGSEKVTFILWTNIYYFFKLMFSKLIQTFINKSYRYYGFVIVIQEQL 196

Query: 229 WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK-------SMCLLGM- 280
            KNR L+  D+   I +     +A +     V   S +    H         S+  + M 
Sbjct: 197 SKNRILVERDVKHNICATLTSATAESKSRASVVLKSEKIYLRHNSFTDDLPISIIFMAMG 256

Query: 281 MQSLHE------------------------EGIHTQHDSKVFFGQIFKEKL--------- 307
           ++S  E                          I T  D+ +F G   + ++         
Sbjct: 257 IESTQEIAEIIGAGHSYPRSVYLSLSPLIANDIRTIKDALLFIGSRIRSRIMARGFFAPV 316

Query: 308 QYDLRHLNEVEICDY--MLTNCILPHL-------DDYWDKFLCLSHMTCKLFHVVQGMVQ 358
           +  +   + V I +   +L   ILPH+        DY +K  CL+ M  ++ +       
Sbjct: 317 KEKVAKSDTVIIKEAYDILDRVILPHVPMKKSKSRDYSEKITCLALMVRRVLNCAYKDAP 376

Query: 359 LDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTSAVLKES--------DI 397
           LD +D    + +   G L    +  L KK         E+S    +   S        D 
Sbjct: 377 LDDKDHYGNKRLELAGQLVSILFEDLYKKFIFQVKKQVEQSLERYIQSRSSGSDTTYPDT 436

Query: 398 YAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR- 456
           +       I   M + L+TGN +  +      M+ SG   + + ++R+ YM+    + R 
Sbjct: 437 FRNLPHDIITRGMQSSLSTGNWNIKRFK----MERSG---VTQILSRLNYMATIGMMMRI 489

Query: 457 GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP 515
            S F++ R  S PR L    WGFICP  TP+G  CGL+ +L     ++     + L ++ 
Sbjct: 490 NSQFEKGRKVSGPRALSPSQWGFICPCDTPEGESCGLVKNLALATHVTNDENPQYLERL- 548

Query: 516 SVLVSLGMLPLTPVIQS--IPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIP 573
             L SLG+ P   V        +  +V L+G +VG  +   A  L+  +R L+  G KI 
Sbjct: 549 --LYSLGLFPSKYVATRDLFDPRNWLVFLNGLLVG--VHSNAELLMDNIRKLRRAG-KIG 603

Query: 574 KSLEI------VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------LAAGNI 615
           + + I      VY+   + G    P + + +G  ++   +++            L  G +
Sbjct: 604 EFVSIYCDDSSVYIS-SDGGRVCRPLIIVESGKSKLTNEILDQVIAGKLKLNQLLKGGIL 662

Query: 616 EWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
           EWI   E+  + I     E     TTH EL     L  ++ LIP P  NQSPRN YQC M
Sbjct: 663 EWIDVNEENNLLIATKPNEITCK-TTHLELDPFTILGIISGLIPYPHHNQSPRNTYQCGM 721

Query: 676 GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGY 735
           GKQ +G+   N   +    L+ L  P  P            +  P G NAIVAV+SY GY
Sbjct: 722 GKQAIGSVGYNQFSRCDTILHTLVYPQKPLVTTRTVKLTAFEKLPAGQNAIVAVMSYGGY 781

Query: 736 DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVV 795
           ++EDA+++NK+S ERGF      K M +EL+           ++G              +
Sbjct: 782 EIEDAIVINKASVERGFGRCISMKRMSVELKK---------YHTGSSDIAAPTNQLASNI 832

Query: 796 HYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENR 855
           +YQ +                             DG+V VG +L+    + S   + + +
Sbjct: 833 NYQGIES---------------------------DGIVRVGHELSNDQIIVSKITQGQ-K 864

Query: 856 YVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGIC 915
               +Y       ++ V + +  T G  V      +  R  R+P +GDKF+SR GQKG+ 
Sbjct: 865 ITPVKYKQNTSSHLDRV-IVTDTTSGCRVYK----MMLRKFRSPELGDKFSSRHGQKGVV 919

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            +    EDLPF+ +G VPD++ NPHGFPSRMT+G L
Sbjct: 920 GLIANQEDLPFSSNGWVPDLIMNPHGFPSRMTVGKL 955



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I L+ G++  G E +YSG  G  ++  IF G ++YQ+L+HMV DK   +    R    + 
Sbjct: 987  ILLQHGFSPSGKELLYSGFTGEAIETYIFTGPIYYQKLKHMVQDKIHARGRGPRQLLTRQ 1046

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + SY              G   + +E + +SS      
Sbjct: 1047 PTEGRSKDGGLRLGEM--ERDCLISY--------------GTSNLILERLMLSSDVCR-V 1089

Query: 883  SVTPNCAYIGYR 894
             V   C  IGY+
Sbjct: 1090 MVCNKCGLIGYK 1101


>gi|353241879|emb|CCA73664.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
           [Piriformospora indica DSM 11827]
          Length = 528

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 171/522 (32%), Positives = 257/522 (49%), Gaps = 84/522 (16%)

Query: 41  LSAPSLKNLT-DKNFGKPPDKQ--NEFLLTLGAPHIASFDFMLDE-GLD----------- 85
           ++A S + L  ++ F  PP K   N  L  L APHI SF+ + D+ GLD           
Sbjct: 1   MAAHSFETLKREQAFLNPPTKGHVNPTLDRLAAPHIESFNSLFDDSGLDRGDTDGRGLLS 60

Query: 86  LAVEDIAP---------IEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQ 136
           L +++I                 G  L   I + A+  P VP         + YP+EAR+
Sbjct: 61  LGLKEIGEKVVFSGNQSSSGNSRGARLAFWIDQIAVGRPMVPEKDRHSIERRIYPSEARE 120

Query: 137 TRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDE 196
               Y G   V + WS +G      T++ G +PIM++S RC+LR L+ A+LI+R E P+E
Sbjct: 121 RLVSYRGRMTVRICWSVNGGPENNETRDCGLLPIMVRSVRCNLRGLSSAELIKRHEEPEE 180

Query: 197 WGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV 256
           +GGYFI+ G+E+L+R LI  RRNH +A+ R ++ NRG  ++   V IR V+ D+S+  N 
Sbjct: 181 FGGYFIINGNERLIRYLILPRRNHVVALIRPSFVNRGPSYTPYAVQIRGVRADQSSVTNS 240

Query: 257 LHFVTNGSARFMFSHRKS----------MCLLG----------MMQSLHEE--------- 287
           LH+++NGSA F FS RK             L+G          +MQ  H           
Sbjct: 241 LHYLSNGSATFRFSWRKQEYVIPIMLILKALVGASDLEIFEAVIMQDYHNTFLTDRVELL 300

Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
                    ++T      + G+ F+  L      ++  E+  +++   +L HLDD  DKF
Sbjct: 301 LRSFKNHYSLYTGAQCLDYLGEKFRVVLGQP-EDMSNRELGIWLIRKVVLVHLDDPRDKF 359

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-KSGTSAVLKE--SD 396
             L  M  KL+ +V G    D+ DS   QEI+  GSLY  ++K+  +   + V  +   D
Sbjct: 360 RMLIFMLRKLYALVSGQCCPDNPDSPQHQEILLPGSLYGMIIKERLEEALNQVRNQIAQD 419

Query: 397 IYAAFRAS-----------------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
           +     A                   I S M NFLATGN+ +   + L L QA+GF I+A
Sbjct: 420 VRREVAAVDFFDRRYVNKVLQKVSFDIGSKMVNFLATGNLVSP--TGLDLQQAAGFTIVA 477

Query: 440 ENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           E +N  RY+SHFR VHRG++F E++++  R+L  ++WG   P
Sbjct: 478 EKLNWYRYISHFRCVHRGAFFAELKTTTVRKLLPESWGMSGP 519


>gi|209876614|ref|XP_002139749.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
 gi|209555355|gb|EEA05400.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1219

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 257/993 (25%), Positives = 410/993 (41%), Gaps = 199/993 (20%)

Query: 105  LNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE 164
            +  + A +  PK+    V I      P   R     Y+ P  V V +            E
Sbjct: 94   IEFLDARVGMPKLEENMVTIDLT---PMMCRMRDITYAAPIYVDVDYVRGNNVVRKKNVE 150

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLI- 214
            +GR+P+ML+SK C L   TP ++I   E P + GGYF+V G EK++         R+++ 
Sbjct: 151  IGRIPVMLRSKVCILYGKTPLEMINLSECPHDPGGYFVVKGTEKVILMQEQLSKNRIIVE 210

Query: 215  -NNRRNHPIAIKRNAWKNRG---LLFSDLGVYIRSVK-RDESATNNVLHFVTNGSARFMF 269
             +N+ N+   +     +++    +++ +  +Y+R     D+     VL  +   + + +F
Sbjct: 211  LDNKHNYCATVTSTTAESKSRTLVVYKNGKLYLRHNSFTDDIPLCIVLKAMGIETEQELF 270

Query: 270  S--HRKSMCLLGMMQSL---HEEGIHTQHDSKVFFGQIFKEKLQYD-------------- 310
                 KS    G++ SL   H E I TQ  +  F  +  K K++                
Sbjct: 271  QVIGNKSYHYEGIITSLQDVHIEKIITQRQALQFMSKRMKSKVRMSFGFTGGRPNRHNPT 330

Query: 311  -----------------------LRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLS 343
                                   +R +N +E     L   +L H+     D   K L L 
Sbjct: 331  YTEQNRSEEALDRMNTSNADNTLVRQVNGIEDVLETLNRVVLSHVGTIYGDLRPKALILC 390

Query: 344  HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-----------YLQLLKKE-------- 384
             M  ++    +    LD +D    + I   G L           +  L KK+        
Sbjct: 391  LMARRVIDASENQSLLDDKDYYGNKRIELAGQLISILFEDLFKRFASLTKKQIDQTLVRY 450

Query: 385  ---KSGTSAVL--KES------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K  +S V   KE       D +       I   M   L+TGN S  +      M+ S
Sbjct: 451  FQTKDNSSKVTSGKEDTNSNYPDCFRNLPTDIITRGMQTALSTGNWSIKRFR----MERS 506

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   M + ++R  Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 507  G---MTQVLSRYSYISALGIMTRVDSQFEKARKVSGPRALQPSQWGILCPCDTPEGESCG 563

Query: 492  LLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVI-----------------QSI 533
            L+ +L     I+ ++ P  ++     +L SLG+  +                      ++
Sbjct: 564  LVKNLALTTHITTDHNPQYLIG----LLFSLGVQDIASASWFEWKQHSQDGNTSLREHNL 619

Query: 534  PEQALMVMLDGRIVG--YILDQIATSLVPKLR------MLKIVGEKIPKSLEIVYLKRPE 585
               A  + ++G ++G  Y  + +A++L    R       + I       S++I      +
Sbjct: 620  SGNAYFIFINGALLGIHYNPETLASNLRDLRRKGYISQFVSIFCNHSQYSVQIA----TD 675

Query: 586  KGMGLYPGLYLFTGPGRMLRP-VMNLA-----------AGNIEWIGTFEQVFMDICITMK 633
             G    P + +  G  R+ +  + NL             G +EWI   E+  + I +  +
Sbjct: 676  GGRLCRPLIIVDNGKQRIQKEHIENLENKQITFNDLINKGILEWIDVNEENNLLIALK-E 734

Query: 634  EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
            E     TTH E+     L  ++ LIP P+ NQSPRN YQC MGKQ MG   LN   +   
Sbjct: 735  ENITEETTHVEIDPLAILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGVVGLNQFLRCDS 794

Query: 694  KLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
             LY L  P  P  +    + ++ +  P G N+ VA++SYTGYD+EDA+I+NK+S +RGFA
Sbjct: 795  ILYLLVYPQKPLCKTRTIEMINFEQLPAGQNSSVAIMSYTGYDIEDAIIMNKASIDRGFA 854

Query: 754  HGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
               + K   +EL+          + +G+      A+   G        + + D   TK Y
Sbjct: 855  RCFVIKRQTVELQK---------LPNGL------AECVIGP-------NKLLDNSSTKVY 892

Query: 814  FGRDPANKALEDKLGPDGLVYVGAKLNERDPMY---------------SYWKESENRYVT 858
                    +  + L  DG+  VG  + E D +                S    SE R   
Sbjct: 893  -------NSNWNVLEEDGICRVGEMVAEDDIIVNKVSPINTREYVGDPSQVNLSEYRLTP 945

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
             +Y G     ++ V ++   +EG  +      I  R  R P +GDKF+SR GQKG+  + 
Sbjct: 946  IKYKGIAPSYIDRVLLTEN-SEGSHIYK----IITRQTRLPELGDKFSSRHGQKGVVGLI 1000

Query: 919  WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
               ED PF++SG  PD++ NPHGFPSRMT+G L
Sbjct: 1001 VSQEDFPFSESGWCPDLIMNPHGFPSRMTVGKL 1033



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 9/115 (7%)

Query: 741  MILNKSSYERG-FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFG 793
            +I +K+S   G + +G  F    +E      +++G++Y G E + SG+ G  ++  IF G
Sbjct: 1036 LISSKASVLDGNYRYGTAFGGTPVEDAAKCLIQNGFHYSGKEYLTSGITGEAIETYIFVG 1095

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
             + YQ+LRHMV DK   +    R    +   +    DG + +G    ERD + +Y
Sbjct: 1096 PIFYQKLRHMVLDKMHARGRGPRQILTRQPTEGRSKDGGLRLGEM--ERDCLVAY 1148


>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
           [Tribolium castaneum]
 gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
          Length = 1122

 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 253/988 (25%), Positives = 411/988 (41%), Gaps = 199/988 (20%)

Query: 72  HIASFDFMLDEGLDLAVE-------DIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           HI SF++ ++  +   VE       D  P+ +  Y            +  P V  G    
Sbjct: 36  HIDSFNYFINVDIKKIVEANNKLVCDADPLFYVKY--------TNVYVGRPDVDEG---- 83

Query: 125 HFNKYYPT---EARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN 181
            FN   PT   E R     YS P +V + ++   +        +GR+PIML+S  C L N
Sbjct: 84  -FNISKPTTPHECRLRDMTYSAPISVDIEYTRGTQRVSKAGLMIGRMPIMLRSSNCVLTN 142

Query: 182 LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLF-SDLG 240
            +  +L +  E P + GGYF+V G EK+            I I+    KNR ++  S  G
Sbjct: 143 KSEYELAKMNECPLDPGGYFVVKGQEKV------------ILIQEQLSKNRMIVEESKFG 190

Query: 241 VY--IRSVKRDESATNNVL-----HFVTNGS------ARFMF-----SHRKSMC-LLGM- 280
           V   + S   ++ +  NV+     +++ + S         +F     +  K +C L+G+ 
Sbjct: 191 VQCAVTSSTHEKKSRTNVVCKANKYYLGHNSLTDLVPVSIIFKALDVTSDKEICELIGVE 250

Query: 281 --------MQSLHEEGIHTQHDSKVFFGQ--IFKEKLQYDLRHLNEVEICDYMLTNCILP 330
                   ++  H   I+TQ  +    G   + K  +    +    V+    +L   +L 
Sbjct: 251 DISKLTPTLEECHTLKIYTQLGALKHIGSKLVAKRYVTSASKMKTPVDEARDVLATTVLA 310

Query: 331 HLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLK 382
           H+     ++  K + L  M  ++         +D +D    + +   GSL    +  + K
Sbjct: 311 HVPVENYNFRMKAIYLGVMVKRVIEAQSDKKFMDDKDYYGNKRLELAGSLLSLMFEDVFK 370

Query: 383 K---------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
           +         EK+       + D+    R+  I + +   ++TGN +  +      M+  
Sbjct: 371 RFNWELKSIAEKTIPKIRATQFDVVKYMRSDLITNCLVYAISTGNWTIKRFR----MERL 426

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 427 G---VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACG 483

Query: 492 ------LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
                 L+ H+TT+      I     A +  + +S GM   +P       +   V L+G 
Sbjct: 484 LVKNLALMTHITTDVDEYPLIRLANNAGVVDINMSSGMSIHSP-------ETFFVFLNGN 536

Query: 546 IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG-----LYLFTGP 600
           I+G I +     L+   RML+  G      L   Y+        +YP      +Y+ +  
Sbjct: 537 ILGTIRNY--KKLIHTFRMLRRSG------LISGYV-------SIYPNFLHRCIYISSDG 581

Query: 601 GRMLRPVMNLAAGN--------IEW---IGTFEQVFMDICITM--------------KEA 635
           GR+ RP + +  G         IE    I +FE    D  I                ++ 
Sbjct: 582 GRLCRPYIIVERGRPLVTQNHIIELEKGIRSFEDFLHDGLIEFLDVNEENDSFIACYEKD 641

Query: 636 YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
              +TTH E++    L   A L+P P  NQSPRN YQC MGKQ MGT   N + +    L
Sbjct: 642 ITDLTTHLEIATFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQKNRMDTLL 701

Query: 696 YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
           Y L  P +P  +    +  + D  P G NA +AV+SY+GYD+EDA+I+NK+S +RGF   
Sbjct: 702 YSLVYPQAPMVKTKSIELTNFDKLPAGQNATIAVMSYSGYDIEDALIINKASIDRGFGRC 761

Query: 756 CIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG 815
            ++K+    ++     Y  +T         +Q  +     +    +H V D         
Sbjct: 762 LVYKNSKCVMKR----YANQTF------DRIQGPLIDTTTNAPMWKHAVLDM-------- 803

Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCR-----YSG 863
                         DG+V  G  ++ +        P  S    S+   V  +     Y  
Sbjct: 804 --------------DGIVAPGESVDNKQVLVNKSVPTVSAVPGSQTTSVEYKDTPICYRN 849

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
            E   +E V +S+   +   +      I  R  R P +GDKF+SR GQKG+  +    ED
Sbjct: 850 NEPSYIEKVLVSTNEEDTTIIK-----ILLRQTRRPEIGDKFSSRHGQKGVVGLVVEQED 904

Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +PF + G+ PDI+ NPHG+PSRMT+G L
Sbjct: 905 MPFNEYGICPDIIMNPHGYPSRMTVGKL 932



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G+NY G +  YSG+ G  ++A I+ G V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 969  GFNYQGKDFFYSGITGEPLEAYIYSGPVYYQKLKHMVQDKIHARGRGPRAVLTRQPTEGR 1028

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1029 SRDGGLRLGEM--ERDCLIGY 1047


>gi|193599220|ref|XP_001950634.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
           [Acyrthosiphon pisum]
          Length = 1112

 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 262/990 (26%), Positives = 419/990 (42%), Gaps = 182/990 (18%)

Query: 63  EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAG 120
           E+L T G  + HI SF+  +D  L   ++    +  +       L+     +  P+V  G
Sbjct: 14  EYLETRGLYSHHINSFNAFIDSDLKKIIQQNHAVRSDA-DPNFYLHFKNVTVGHPQVDDG 72

Query: 121 PVGIHFN---KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE---VGRVPIMLKS 174
                FN      P E R     Y  P  V + +    K+G  + ++   +GR+PIML+S
Sbjct: 73  -----FNVTRNVTPQECRLRDLTYCAPIYVDIEYV---KSGMKYLRKGFIIGRLPIMLRS 124

Query: 175 KRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGL 234
            RC L   + A+L +  E   + GGYFIV G EK+            I ++    KN+ L
Sbjct: 125 NRCCLYQKSDAELAKMKECIYDSGGYFIVKGTEKV------------ILMQEQPAKNKIL 172

Query: 235 LFSDLG----VYIRSVKRDESATNNV-----LHFVTNGSAR-----FMFSHRKSMC---- 276
           +  D      V + S   D+ +  N+     L +V + +        +F     +C    
Sbjct: 173 VEKDSNGVPTVQVMSSTVDKKSKTNIIFKKNLIYVCHNALEENIPFVIFMKALGVCSDQL 232

Query: 277 ----------LLGMMQSLHEEG----IHTQHDSKVFFGQIFKE----KLQYDLRHLNEVE 318
                     ++  M     EG    I+TQ  +  F G   K+       YD R + EV 
Sbjct: 233 ILQMVGTEFAIMNQMYPCFLEGSKLNIYTQKQALRFIGDRIKKMGFSSEDYDSRVITEVH 292

Query: 319 ICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
             D+ L+  IL H+     +Y  K +  S M  +L   +      DS+D    + +   G
Sbjct: 293 --DF-LSTVILAHIPVTNTNYHMKAIYTSIMVRRLIFSLSNPDLFDSKDYYGNKCLDLPG 349

Query: 375 S----LYLQLLKKEKSGTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSA 421
           S    L+    K+      +V  ++         DI    R  +I +A+   + TGN S 
Sbjct: 350 SFLSLLFDDTFKRFTFELKSVADKNIPKVKATPFDIIKYIRTDTITNALVFAIQTGNWSI 409

Query: 422 GKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFI 479
            +      M+  G   + + + R+ Y+S    + R  S F++ R  S PR L+   +G +
Sbjct: 410 KRFR----MERHG---VTQVLTRLSYLSAIGMMTRVNSQFEKSRKVSGPRSLQPSQFGML 462

Query: 480 CPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP--LTPVIQSIPEQA 537
           CP  TP+G  CGL+ +++    ++    S+    +  + ++LG+ P  L  V     +  
Sbjct: 463 CPSDTPEGEACGLIKNISLLAHVT--TESEDDDAVLQLALNLGVEPVGLYSVDDLHEDYM 520

Query: 538 LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLF 597
            +++ +G I+G     I    V K R  +  G  I      +Y+    K       +Y+ 
Sbjct: 521 YLIIFNGNIIGSTNKCI--DFVDKFRRCRRKG--IFSKFISIYISERHKC------IYIN 570

Query: 598 TGPGRMLRPVMNLAAGN--------------------------IEWIGTFEQVFMDICIT 631
           +G GR+ RP + +  G                           IE+I   E+    I   
Sbjct: 571 SGDGRLCRPYLVVENGQPLLTNAHIDDLKRGYCTFQDFIDQSLIEFIDVDEENNCLIAYN 630

Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
            ++  P  TTH E++    L   A++IP P  NQSPRN YQC MGKQ +GT  LN++++ 
Sbjct: 631 EEKIVPE-TTHMEMAPFSILGICASVIPFPHHNQSPRNTYQCAMGKQAIGTIALNYQHRI 689

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
               Y L     P         ++ D  P G NA +AV+SY+GYD+EDA+ILNK+S +RG
Sbjct: 690 DTLQYNLWYTHIPMVHSKAVPMINYDKLPAGQNATIAVMSYSGYDIEDAIILNKASVDRG 749

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM-------- 803
           F  G  F++    L     +Y  + M S + G ++       +  ++ L +         
Sbjct: 750 FGRGGTFRNSKCFLR----HYPNQMMDS-IQGPIIDNATKKPIYKHRALENDGIAAIGQP 804

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
           V DK  T +     P    +ED  G  G         +  P+Y              Y G
Sbjct: 805 VFDKQVTIN--KATPKTITVEDVGGDRGF--------KETPLY--------------YKG 840

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYI--GYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
            +   V+ V ++S          +C  I   +R  R P +GDKF+SR GQKG+  +    
Sbjct: 841 YDPSYVDKVMITS--------NSDCFLIKENFRQPRRPEIGDKFSSRHGQKGVVGLIVDQ 892

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ED+PF + G+ PD++ NPHGFPSRMT+G L
Sbjct: 893 EDMPFNEVGICPDLIMNPHGFPSRMTVGKL 922



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 769  YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
            YNY G + +Y G+DG  M+A I+ G V YQRL+HMV+DK   +    R    +   +   
Sbjct: 960  YNYLGKDVLYCGIDGRPMEAYIYSGPVFYQRLKHMVADKIHARSRGPRVLLTRQPTEGRS 1019

Query: 829  PDGLVYVGAKLNERDPMYSY 848
             DG + +G    ERD + +Y
Sbjct: 1020 KDGGLRMGEM--ERDCLIAY 1037


>gi|167525657|ref|XP_001747163.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774458|gb|EDQ88087.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1097

 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 238/905 (26%), Positives = 386/905 (42%), Gaps = 156/905 (17%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N   P + R   + Y+G   V + +    +        +GR+PIML+S  C L   + A+
Sbjct: 79  NTVTPMQCRLRSATYAGDIVVDLEYRRGHETLRVENTRIGRMPIMLRSNLCVLNGASHAK 138

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS---DLGVYI 243
             + GE P + GGYF+V G EK+            I I+    KNR ++     DL   +
Sbjct: 139 QAKYGECPHDPGGYFVVSGTEKV------------ILIQEQLSKNRIIVEEFKGDLTASV 186

Query: 244 RSVKRDESAT------NNVLHFVTNG-----------SARFMFSHRKSMCLLGM------ 280
            S   D          N+  + + N             A  + S ++ M L+G       
Sbjct: 187 TSSSADRKTKTTIIFKNDQFYMLVNTLSEAVPLVVVLKAMGVISDQEIMQLIGAEEEAML 246

Query: 281 -----MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-- 333
                ++      I TQ+ +  + G   K    Y      E ++   +L++ +L H+   
Sbjct: 247 VLGPSVERCANLNIFTQNQALAYLGSKIKLLRTYGGARTKE-DMGRDLLSSVVLAHVPCE 305

Query: 334 --DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAV 391
             D+  K + LS M  ++  +  G    D  D +  + +   GSL   L +      +A 
Sbjct: 306 NFDFRAKAVFLSLMVRRVI-ISMGDKMTDDRDYLGNKRLELAGSLMSLLFEDTFKNFNAQ 364

Query: 392 LK-ESDI------YAAFRASSI--ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
           LK ++D+       AAF A++   E  +TN L    +S+G N  L+  +     + +  +
Sbjct: 365 LKRQADVNLSKNRVAAFDATNFMREDIITNSLRNA-ISSG-NWILKRFKMERHGVTSV-L 421

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L    
Sbjct: 422 SRLSFIASLGMMTRITSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALMT 481

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
            ++     + L ++   L  +  L L    +       +V ++G ++G  + +    +V 
Sbjct: 482 HVTNDDEEEPLVKLAYNL-GVESLHLINGEEFGRSSTFLVFINGLMLG--VTRRPRIMVR 538

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG------- 613
             R+L+  G +I   + I   K+       +  +Y+ +  GR  RP + +  G       
Sbjct: 539 NFRLLRRSG-RISPFVSISLNKK-------HRCVYIASDAGRTCRPYIIVENGKSKVRPH 590

Query: 614 NIEWIGTFEQVFMDICITMKEAYPGI------------------TTHRELSKTDFLSNLA 655
           ++E +      F D  I     Y  +                  TTH E+     L   A
Sbjct: 591 HLEELNMGITTFDDFVINGLVEYLDVNEENDSLLALYENNIEADTTHLEIEPFTILGACA 650

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
            LIP P+ NQSPRN YQC MGKQ MG   LN++ +    LY L  P  P  +    + +D
Sbjct: 651 GLIPYPNHNQSPRNTYQCAMGKQAMGVIALNYQQRIDTLLYSLVYPMRPVVKTRTIELID 710

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
            +  P G N IVAV+S++GYD+EDA ++N++S++RG+    ++  M   L+  YN   T+
Sbjct: 711 FEKLPAGQNPIVAVMSFSGYDIEDATVMNRASFDRGYGRCVVYSKMQTSLKK-YNGNLTD 769

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYV 835
            +                                      RD A  A        G+V V
Sbjct: 770 IIRPA----------------------------------PRDEAGNA-------KGIVAV 788

Query: 836 GAKLNERDPMYSYW----KESENRYVT--CRYS---GKEEMCVEVVRMSSGFTEGGSVTP 886
           G  +  RD + +      + +E  Y +   RY    GK+  C +V  M S   E   +  
Sbjct: 789 GQPMYNRDVLVNKQTPIKRGTEIDYASTQVRYKGTVGKDAYCDQV--MVSSNNEDSMLIK 846

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               I  R  R P +GDKF+SR GQKG+C +    ED+PF D+G+ PD + NPHGFPSRM
Sbjct: 847 ----IRVRSTRIPELGDKFSSRHGQKGVCGLIVNQEDMPFNDAGVCPDKIMNPHGFPSRM 902

Query: 947 TIGFL 951
           T+G L
Sbjct: 903 TVGKL 907



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           L+ GYNY+G + + SG+ G  +++ IF G V YQ+L+HMV DK   +
Sbjct: 941 LKHGYNYHGKDYLTSGITGEPLESYIFMGPVFYQKLKHMVMDKMHAR 987


>gi|268323371|emb|CBH36959.1| DNA-directed RNA polymerase subunit B [uncultured archaeon]
          Length = 1131

 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 240/982 (24%), Positives = 398/982 (40%), Gaps = 168/982 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAG-----PVGIHF 126
            + SF++ LDEG+   ++++   E  I G+  +    K  +   K+  G          +
Sbjct: 21  QLDSFNYFLDEGIQRIIDELPYTETSISGEDEEKGKYKLGVKFGKITVGIPKAREADGSY 80

Query: 127 NKYYPTEARQTRSVYSGP--FNVTVAWSWDGKAGGTFTKE----VGRVPIMLKSKRCHLR 180
              +P++AR     YS P   ++ +   ++         E    +G +PIMLKS RC+L 
Sbjct: 81  EDIFPSQARLRNLNYSAPIILDMQLVKKYESGEIEIVRDEEAVAIGELPIMLKSNRCNLS 140

Query: 181 NLTPAQLI---------------ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
            +   + +               E GE P + GGYFI+ G E ++  L +   N      
Sbjct: 141 KVVIQEKLGKDLSEPEYEDWLKNEAGEDPLDPGGYFIINGSEHVIITLEDLAPNRIFVNF 200

Query: 226 RNAWKNRGLL---FSDLGVYIRSVKRDESATNNVL-----------HFVTNGSARFMFSH 271
              + ++G++   FS L    R   R E +   +L            F+T   A  + S 
Sbjct: 201 EEKYGSKGVVSKVFS-LNQGFRVPIRVEISKKGILEVSFPAVGRKIQFMTLIRALGLESD 259

Query: 272 RKSMCLLG--------MMQSLHEEGIHTQHDSKVFFGQIFK--EKLQYDLRHLNEVEICD 321
            + +  +         +++++ E  + TQ ++    G+     +  +Y  R +N      
Sbjct: 260 EEIIKAVSDDPQIVKYVLENIEECDVDTQEEAIEKLGRKIAPTQAREYRERRVN------ 313

Query: 322 YMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL 381
           Y+L    LPHLD    K   +  M    + +  G      +D    + +   G L   L 
Sbjct: 314 YILDRYFLPHLDTKIAKAYFIGRMAESCYELYLGKRGEGDKDHYANKRLKLAGDLVEDLF 373

Query: 382 KKEKSGTSAVLK-----------ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLM 430
           +   +  +  ++           E  I  A R+  +   + + LATGN   G+    QL+
Sbjct: 374 RVSFTKLTRDMRYQLERANMRSRELKIATAIRSDVLTERIVHALATGNWVGGRAGVSQLL 433

Query: 431 QASGFVIMAENINRM-----RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTP 485
           + S ++    ++ R+     R   HF               E R L    WG ICP  TP
Sbjct: 434 ERSNYIATLSHLRRIISPLSRSQPHF---------------EARDLHPTQWGKICPSETP 478

Query: 486 DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
           +G  CGL+ + +   +IS     K    I   L  LG++P    ++   E    V ++G 
Sbjct: 479 EGPNCGLVKNFSQMVEISVGEDEKSFKDI---LYELGVIPPARSLEISAESRTRVFVNGD 535

Query: 546 IVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
            +G+  + +I    V K R      ++I   + I Y +           + + +  GR  
Sbjct: 536 FIGFSTEPEIFVDAVRKKRR----SDEISTQVNIAYYRDQSD-------IIINSDRGRAR 584

Query: 605 RPVMNL--------------------------AAGNIEWIGTFEQ----VFMDICITMKE 634
           RPVM +                          + G IE++   E+    + ++     KE
Sbjct: 585 RPVMVVENKTPLLTESQIEKLRKGEMNFDDLVSVGVIEYLDAEEEENALIALNESDLTKE 644

Query: 635 AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGK 694
              G T H EL  +  L  +A LIP PD N SPRN   C M KQ++G    N++ +   +
Sbjct: 645 GGNGYT-HLELDPSLILGIVAGLIPYPDHNSSPRNTMGCAMLKQSLGLSTANYKTRADTR 703

Query: 695 LYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAH 754
            + L +P  P       D +     P G N +VAV+SY GY+MEDA+ILN+++ +RG   
Sbjct: 704 THLLHSPQKPLVTTRTADLIQHGRRPAGQNFVVAVLSYEGYNMEDALILNQAAIDRGLGR 763

Query: 755 GCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF 814
              F++          Y G E  Y G +      +  F +   + +     D +Q  D  
Sbjct: 764 SHFFRT----------YEGEERRYPGGE------EDIFEIPDVEIVGVRSHDAYQQLDDA 807

Query: 815 GRDPANKALEDKLGPDGLVYVGAK-----LNERDPMYSYWKESENRYVTCRYSGKEEMCV 869
           G    N  +E  + P+  V +G       L E   + S  +  +     C  + +     
Sbjct: 808 G--IINSEVE--VVPND-VLIGKTSPPRFLEETTELLSPLERRDTS--ICTRANERGRVD 860

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
            VV M S      S       +  R Q+ P VGDKFASR GQKG+  +    ED+PFT+ 
Sbjct: 861 SVVLMES------SSNRRLIKVAVRDQKIPEVGDKFASRHGQKGVIGLIARPEDMPFTEG 914

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G++PD++ NPH  PSRMT+G +
Sbjct: 915 GIIPDMIINPHAIPSRMTVGHV 936



 Score = 45.4 bits (106), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + +G++  G E M+ G+ G+ + A +F GVV+YQ+L H+VS K   +
Sbjct: 970  VRAGFSDTGREMMWDGLKGTKIDADVFVGVVYYQKLYHLVSAKMHAR 1016


>gi|401889092|gb|EJT53032.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
            2479]
          Length = 1213

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 229/917 (24%), Positives = 383/917 (41%), Gaps = 154/917 (16%)

Query: 122  VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN 181
            VG    +  P E R T + YSG   V + ++ + K        +G +PIML+S  CHL  
Sbjct: 171  VGSSNTRLTPMECRLTDNTYSGGIYVDIEYTHEDKIRKQQGIHIGSLPIMLRSDLCHLAG 230

Query: 182  LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
                +L   GE P + GGYF+V G EK+            I ++    KNR ++ +D   
Sbjct: 231  KNDLELARMGECPLDPGGYFVVKGTEKV------------ILVQEQLSKNRIIVMTDPKK 278

Query: 242  YIRSVKRDESATNNVLH-FVTNGSARFMFSHRK---------SMCLLGMMQ--------- 282
             + + +   S  + V+  +VT  ++R    H           ++  +G+           
Sbjct: 279  DVTTAEVTSSTHDRVVKTYVTTKASRLYLRHSSFKEPIPIVIALKAMGVTSDKEILQLVC 338

Query: 283  ------------SLHEEG---IHTQHDSKVFFGQIF---KEKLQYDLRH-LNEVEICDYM 323
                        SL E     ++T+ ++  + G      +EK    L H L   ++    
Sbjct: 339  GPDEKYQEAFGMSLEEAARLRVYTRREALEWIGARVSPTQEKEDRSLGHKLTPTDMAMQA 398

Query: 324  LTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQ 379
            L   +L H+     ++  K + L+ M+ ++   +     +D  D +  + +   G L   
Sbjct: 399  LAAMVLGHVPVRDMNFRPKAIYLATMSRRVLAAMLDENMVDDRDYVGNKRLELAGQLLSL 458

Query: 380  LLKKE--------KSGTSAVLKESDIYAAFRASS---------IESAMTNFLATGNVSAG 422
            L +          K     +L++      F AS+         I SA    ++TGN S  
Sbjct: 459  LFEDSFKTFNSDLKKRMDKILEKKTRAGPFDASTLVRTGGGDIITSAFVRSISTGNWSLK 518

Query: 423  KNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFIC 480
            +     + +A     +   ++R+ +++    + R  S F++ R  S PR L+   WG +C
Sbjct: 519  R---FHVERAG----VTHVLSRLSFIAALGMMTRITSQFEKTRKVSGPRALQPSQWGMLC 571

Query: 481  PVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
            P  TP+G  CGL+ +L     I+  +P   L ++ + ++    + L    +   +   +V
Sbjct: 572  PSDTPEGEACGLVKNLALMTHITTDVPEDPLIKL-AFMLGAEDISLATGNELYRDGVHLV 630

Query: 541  MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
             ++G ++G  +  +    V   R L+  G         +Y+   ++       +Y+ +  
Sbjct: 631  QVNGNLIG--VTALPRKFVRTFRKLRRSGRT--SEFVSIYINHHQRV------IYIASDG 680

Query: 601  GRMLRPVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKE 634
            GR+ RP++                           L +G +E++   E+    I     E
Sbjct: 681  GRICRPLIIVENGRPRVTSEHMQLLKAGKVTFDHFLRSGLVEYLDVNEENDSFIACYESE 740

Query: 635  AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGK 694
                 TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    
Sbjct: 741  ITED-TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTL 799

Query: 695  LYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAH 754
            LY +  P  P  +    + +  D  P G NA VAV+SY+GYD+EDA+I+N++S +RGF  
Sbjct: 800  LYLMTYPQQPMVKTKTIELVGYDRLPAGQNATVAVMSYSGYDIEDALIVNRASADRGFGR 859

Query: 755  GCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW-QTKDY 813
              + K   I + S  N  GT                       +RL  +  D+  +T  +
Sbjct: 860  CHVLKKQTIPIRSFPN--GTS----------------------ERLAMLPPDQRPETHSW 895

Query: 814  FGRDPANKALEDKLGPDGLVYVGAKLNERD-PMYSYWKESENRYVTCRYSGKEEMCVEVV 872
              +D         + P  +V  G  L  R+ PM +        +     + K      + 
Sbjct: 896  LDQD-------GLVAPGSVVSQGDVLAARETPMDTRGPGPTVGFKATPVAHKLPEPTNID 948

Query: 873  RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            ++    TE G+       I  R  R P +GDKF+SR GQKG+C +  P +D+PF D G+ 
Sbjct: 949  KVMVTDTEDGN---QLIKILTRQTRRPELGDKFSSRHGQKGVCGLIVPQQDMPFNDQGIC 1005

Query: 933  PDIVFNPHGFPSRMTIG 949
            PDI+ NPHGFPSRMT+G
Sbjct: 1006 PDIIMNPHGFPSRMTVG 1022



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I +++G++Y G +T+ SG+ G  ++  ++FG ++YQ+
Sbjct: 1033 GLMAGKLQYGTAFGGSKVVDMSQILIDAGFSYAGKDTLTSGITGESLETYVYFGPIYYQK 1092

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            L+HMV DK   +    R    +   +    DG + +G    ERD +  Y
Sbjct: 1093 LKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEM--ERDCLIGY 1139


>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
          Length = 1134

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 250/974 (25%), Positives = 406/974 (41%), Gaps = 167/974 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKY-- 129
           HI +F++ ++  +   V+    ++ +       L  +   + +P V  G     FN    
Sbjct: 42  HIDAFNYFINVDIKKIVQANQEVKSDA-DPCFYLKYLNVHVGKPDVEEG-----FNNTKS 95

Query: 130 -YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
             P E R     YS P  V V ++   +        +GR+PIML+S  C L   +  +L 
Sbjct: 96  TTPHECRLRDMTYSAPITVDVEYTRGTQRVVRNGLLIGRMPIMLRSSNCILNGKSDYELS 155

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAW------------KNRGLLF 236
           +  E P + GGYFI+ G EK++ +      N  I    N              K+R +L+
Sbjct: 156 QVNECPMDPGGYFIIRGTEKVILIQEQLSWNKMITEDYNGLIQCQVTSSTHEKKSRTILY 215

Query: 237 SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQ--------SLHEEG 288
           S  G Y   +K +       +  +    A  + S ++ M L+G+ Q        SL E  
Sbjct: 216 SKHGRYY--LKHNSMTEEIPVAIILK--AMGVASDQEIMQLVGIDQETQKRFAPSLLEAA 271

Query: 289 IH---TQHDSKVFFGQ--IFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
            H   TQ  +  + G   I K       ++    +    +L   IL H+     ++  K 
Sbjct: 272 KHKVYTQQRALEYMGSKLIAKRFTTAATKYRTTADEARDLLATTILAHVPVRSFNFQVKA 331

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKS 386
           + ++ M  ++         +D  D    + +   GSL    +  LLK+         +K+
Sbjct: 332 IYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMFEDLLKRFNWELKMIADKN 391

Query: 387 GTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
                  + D+    R + I S +   ++TGN +  +      M+ +G   + + ++R+ 
Sbjct: 392 IPKIKAAQFDVGKHMREALITSGLETAISTGNWTIKRFK----MERAG---VTQVLSRLS 444

Query: 447 YMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTT 498
           Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL      + H+TT
Sbjct: 445 YISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 504

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
                  I     A +  + +  G     P       +  MV ++G I+G  +      L
Sbjct: 505 EVDEEPVIRLAYNAGVEDIRLIGGETINNP-------KVFMVFINGNILGVTI--AYRRL 555

Query: 559 VPKLRMLK---IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN- 614
           V   RM++   ++G  +  S+   + +R          +Y+ T  GR+ RP + + AG  
Sbjct: 556 VEVFRMMRRRGLIGAFV--SIHTSFTQR---------CVYIHTDGGRLCRPYIIVQAGLP 604

Query: 615 -------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
                                    IE++   E+    I    ++  P  TTH E+    
Sbjct: 605 LVLQEHIEQLKLGLRKFDDFLHDGLIEYLDVNEENDSFIAYQERDIDPEKTTHLEIEPFT 664

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y +  P +P  R  
Sbjct: 665 LLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSR 724

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++   
Sbjct: 725 TIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKR-- 782

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
             Y  +T                    + R+   + D    K          A  + L  
Sbjct: 783 --YSNQT--------------------FDRIMGPMKDSLTGKVI--------ARHECLDT 812

Query: 830 DGLVYVGAKLNERDPMYSYWKE----SENRYVTCRYSGKEEMCVEVVRMS-----SGFTE 880
           DG+V  G +L  +  M +  KE      N  +  + SG++ +    V ++       + E
Sbjct: 813 DGIVSPGERLVCKQTMVN--KEMPAVKSNNPIEQKESGQQPIAYSAVPITYKGTEPSYAE 870

Query: 881 GGSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
              V+ N        I  R  R P +GDKF+SR GQKG+  +    EDLPF D G+ PD+
Sbjct: 871 RVLVSTNNEEEFLVKILLRQTRRPEIGDKFSSRHGQKGVTGLIVDQEDLPFNDYGMAPDM 930

Query: 936 VFNPHGFPSRMTIG 949
           V NPHGFPSRMT+G
Sbjct: 931 VMNPHGFPSRMTVG 944



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
             ++G+NY G +  YSG+ G  ++  I+ G V+YQ+L+HMV DK   +    R    +   
Sbjct: 980  FQNGFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPT 1039

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
                 +G + +G    ERD + SY
Sbjct: 1040 QGRSREGGLRLGEM--ERDCLISY 1061


>gi|66356606|ref|XP_625481.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
 gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
          Length = 1287

 Score =  236 bits (603), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 245/999 (24%), Positives = 405/999 (40%), Gaps = 212/999 (21%)

Query: 105  LNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE 164
            +  + A +  PK+    + +      P   R     Y+ P  V V +            E
Sbjct: 161  IEFLDARVGMPKLEENMITVDLT---PMMCRMRDITYAAPIFVDVDYVRGNTVVRKKNVE 217

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLI- 214
            +GR+P+ML+SK C L   T A++++  E P + GGYF+V G EK +         R+++ 
Sbjct: 218  IGRIPVMLRSKVCILHGKTAAEMVKLNECPHDPGGYFVVKGTEKAILMQEQLSKNRIIVE 277

Query: 215  -NNRRNHPIAIKRNAWKNRG---LLFSDLGVYIRSVK-RDESATNNVLHFV---TNGSAR 266
             +N+ N+   +     +++    ++F +  +Y+R     DE     VL  +   T     
Sbjct: 278  LDNKHNYCATVTSTTAESKSRTLVVFKNGKLYLRHNSFSDEIPLCIVLKAMGIETEQEIF 337

Query: 267  FMFSHR--KSMCLLGMMQSLHEEGIHTQHDSKVFFGQ--------IFKEKLQYDLRHLNE 316
            FM  +       ++  +Q +H+EGI TQ  + +F  +         F     +D  +  E
Sbjct: 338  FMIGNEPHHQEGIINSLQEVHQEGIFTQRQALLFMSKKAKSKFKSTFGSSRGFDKSNAEE 397

Query: 317  -------------------VEICDYM--LTNCILPHLDDYWDK------FLCLSHMTCKL 349
                                 I D +  L   +L H+   +        FLCL  M  ++
Sbjct: 398  SAENSGFTEFGGSKSSLCGTSIDDVLETLNRVLLSHIGTIYTDLHPKALFLCL--MAKRV 455

Query: 350  FHVVQGMVQLDSED--------------SIMLQEIMTGGSL------------YLQLLKK 383
                +    LD +D              SI+ +++    S+            Y Q    
Sbjct: 456  LDASEDNSLLDDKDYYGNKRIELAGQLISILFEDLFKRFSVLTKKQIDQTLIRYFQTRDA 515

Query: 384  EKSGTSAVLKESDIYAAFR---ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
             K+GT      S     FR      I   M   L+TGN S  +      M+ SG   M +
Sbjct: 516  SKAGTGRDDSNSTYPDCFRNLPTDIITRGMQTALSTGNWSIKRFR----MERSG---MTQ 568

Query: 441  NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
             + R  Y++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L  
Sbjct: 569  VLTRFSYIASLGIMTRVDSQFEKARKVSGPRALQPSQWGILCPCDTPEGESCGLVKNLAL 628

Query: 499  NCQIS-EYIPSKVLAQIPSVLVSLGMLPL---------TPVIQSIPEQALM--------- 539
               I+ ++ P      + S+L +LG+  +         T   + +  + L          
Sbjct: 629  TTHITTDHCPQ----YLTSLLFTLGVQDISSCSYLDFNTKQSEKLSNEDLKNESSGKNNV 684

Query: 540  -----VMLDGRIVG-YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG 593
                 V ++G ++G +   ++  S +  LR    +G+ +      ++         ++  
Sbjct: 685  KKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVS-----IFCNH------IHSS 733

Query: 594  LYLFTGPGRMLRPVMN--------------------------LAAGNIEWIGTFEQVFMD 627
            + + T  GR+ RP++                           ++ G +EWI   E+  + 
Sbjct: 734  VQIATDGGRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDVNEENNLL 793

Query: 628  ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
            I +   E     TTH E+     L  ++ LIP P+ NQSPRN YQC MGKQ MG+   N 
Sbjct: 794  IALR-DENLTNETTHLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGSVGFNQ 852

Query: 688  RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
              +    LY L  P  P  +    + ++ +  P G N+ VAV+S+ GYD+EDA+++NK+S
Sbjct: 853  FLRCDSVLYLLVYPQKPLCKTRTIEMINFEQLPAGQNSSVAVMSFAGYDIEDAIVMNKAS 912

Query: 748  YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
             +RGFA   + K   IEL+   N      +     GS       F               
Sbjct: 913  VDRGFARCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFS-------------- 958

Query: 808  WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY---------------SYWKES 852
                  F  D         L  DG+  VG +++E D +                S +  S
Sbjct: 959  ------FKNDSI-------LDNDGVCNVGVQVSEDDIIVNKMSPINTREYVGDPSQFDLS 1005

Query: 853  ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
            E +    +Y G     ++ V ++    +G  +      +  R  R P +GDKF+SR GQK
Sbjct: 1006 EYKPSPVKYKGPTSSYIDRVILTEN-ADGNQIYK----VITRQTRRPELGDKFSSRHGQK 1060

Query: 913  GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            G+  +    EDLPF+++G  PD++ NPHGFPSRMT+G L
Sbjct: 1061 GVVGLIISQEDLPFSETGWCPDLIMNPHGFPSRMTVGKL 1099



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +E G++Y G E + SG  G  ++A IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1133 VEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRGPRQILTRQPT 1192

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    DG + +G    ERD + +Y              G   + +E + ++S   E  +V
Sbjct: 1193 EGRSKDGGLRLGEM--ERDCLVAY--------------GASNLLIERLMLNSDVFE-TNV 1235

Query: 885  TPNCAYIGY 893
               C   GY
Sbjct: 1236 CNQCGLFGY 1244


>gi|241614087|ref|XP_002407492.1| RNA polymerase III, putative [Ixodes scapularis]
 gi|215502825|gb|EEC12319.1| RNA polymerase III, putative [Ixodes scapularis]
          Length = 1141

 Score =  236 bits (602), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 243/974 (24%), Positives = 399/974 (40%), Gaps = 166/974 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPI----EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           HI SF+  ++  +   V     I    + + Y K L ++I K  + E  V +        
Sbjct: 50  HIDSFNHFINVEIKEIVRANEKITSDADPQFYLKYLDIHIGKPDVEENCVAS-------K 102

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
              P E R     YS P  V + ++   +        +GR+PIML+S  C L + T  Q+
Sbjct: 103 ATTPHECRLRDMTYSAPITVDIEYTRGTQRVVRGDFPIGRMPIMLRSANCILADKTHFQM 162

Query: 188 IERGEHPDEWGGYFIVGGHEKLV---------RLLINNRR-----------NHPIAIKRN 227
            +  E P + GGYF+V G E+++         R+++   R            H    + N
Sbjct: 163 SQMNECPYDPGGYFVVNGVERVILMQEQLSKNRMIVEEDRKGGLMCQVTSSTHERKSRTN 222

Query: 228 AWKNRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM 280
                G  +        D+ + I        +   ++  +  GSA  + S          
Sbjct: 223 VGTKHGRYYLKHNCFTEDIPIAIVFKGMGLESDQEIVQMI--GSADSILS-----TFAPS 275

Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY--MLTNCILPHLD----D 334
           ++  H   + TQ  +  + G   K +  +      +  + D   +L   +L H+     +
Sbjct: 276 LEECHRSQVFTQTQALRYLGGKLKHRRMFFAGGPRKTPVDDARDILATTVLAHVPVEHYN 335

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK------- 383
           +  K + L+ M  ++         +D  D    + +   GSL    +  L K+       
Sbjct: 336 FRVKAMYLALMIRRVIEAQTNREMIDDRDYYGNKRLELAGSLLSLLFEDLFKRFNTELKL 395

Query: 384 --EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
             +K+       + D+    R   I + + + ++TGN +  +      M+  G   + + 
Sbjct: 396 VADKTIPKVRATQFDVVKYVRQDLITNGLVSSISTGNWTVKRFK----MERIG---VTQV 448

Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           + R+ Y+S    + R  S F++ R  S PR L+   +G +CP  TP+G  CGL+ +L   
Sbjct: 449 LTRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQFGMLCPSDTPEGEACGLVKNLALM 508

Query: 500 CQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVGYILDQ---- 553
             I+  +     A I  +L++LG+  + L    +       +V L+G I+G + +     
Sbjct: 509 THITTDLEE---APIVRLLLNLGVEDVHLLNGEELSDPSVYLVFLNGGIIGVVHNHARLL 565

Query: 554 -----------------IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMG----LYP 592
                            + +S V +   +   G ++ +   +V   RP         L  
Sbjct: 566 RTLRLLRRSGHLSEFVSLHSSRVQRCVNISADGGRMCRPYIVVEGGRPLVTAAHLEDLTR 625

Query: 593 GLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGI-TTHRELSKTDFL 651
           GL  F    R          G +E++   E+   D  I ++E   G  TTH E+     L
Sbjct: 626 GLLFFNDFVR---------RGLVEFLDVNEE--NDSYIALRECDIGPETTHLEIEPFTLL 674

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A LIP P  NQSPRN YQC MGKQ MGT  LN R +    LY L  P  P  +    
Sbjct: 675 GVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIALNQRNRIDSLLYLLVYPHRPMVKTKTI 734

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + +  ++ P G NA VAV+SY+GYD+EDA+++N+SS +RGF    + +     L+   N 
Sbjct: 735 ELIHFEDIPAGQNATVAVMSYSGYDIEDAIVMNRSSIDRGFGRCQVCRHQKCTLKRYANQ 794

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
                M   VD + M+                    W+               + L  DG
Sbjct: 795 SHDRVMGPLVDSTTMKP------------------IWK--------------HEPLDTDG 822

Query: 832 LVYVGAKLNERDPMYSYWKES--------------ENRYVTCRYSGKEEMCVEVVRMSSG 877
           +   G ++  R  + + W  S              E++ V   Y G E + VE V +SS 
Sbjct: 823 IARPGDRIENRQVLVNKWVPSASSVGAQPGQPSPPEHKEVPVAYKGLEPVHVEKVLISSN 882

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             E   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF+D G+ PD++ 
Sbjct: 883 TEEAFLIK-----LLLRQTRRPEIGDKFSSRHGQKGVVGLIAQQEDMPFSDQGVCPDLIM 937

Query: 938 NPHGFPSRMTIGFL 951
           NPHGFPSRMT+G L
Sbjct: 938 NPHGFPSRMTVGKL 951



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  G+NY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   
Sbjct: 985  IRRGFNYRGKDCLTSGITGEPLSAYIYFGPIYYQKLKHMVMDKVHARARGPRAVLTRQPT 1044

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  +
Sbjct: 1045 EGRSRDGGLRLGEM--ERDCLIGH 1066


>gi|392563480|gb|EIW56659.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Trametes versicolor FP-101664 SS1]
          Length = 1143

 Score =  236 bits (601), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 232/906 (25%), Positives = 374/906 (41%), Gaps = 146/906 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + Y  P  VT+ ++            +GR+PIML+S +C L   T AQL   
Sbjct: 107 PHECRLRDTTYGAPILVTIQYTRGKSVVRRANVNIGRLPIMLRSNKCVLTGRTEAQLARM 166

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYFIV G EK++         R+++       +          G L S    
Sbjct: 167 TECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEVDPTKGVVQASCTSSTHGGLKSK--T 224

Query: 242 YIRSVKRDESATNNVLH----FVTNGSARFMFSHRKSMCLLG------------MMQSLH 285
           Y+ + K      +N +H     V    A  + S ++ + L               ++   
Sbjct: 225 YVATKKGKIYLRHNSIHEDVPIVIALKALGIQSDKEILLLTAGNHEAYKSSFAPNLEDAA 284

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
           + G+ T+H +  + G   K   +         E     L   +L H+     D+  K + 
Sbjct: 285 KLGVFTRHQALEWIGSRVKVNRRVMGPRRPAWEEALEALATIVLAHVPVSGLDFRSKAVF 344

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVL 392
           ++ MT ++   +     +D  D +  + +   G L L LL ++         K+    VL
Sbjct: 345 VATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQL-LALLFEDLFKTFNANLKAAIDKVL 403

Query: 393 K------ESDIYAA--FRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
           K      E D +    F+   I S     ++TGN S  +      M+ +G   +   ++R
Sbjct: 404 KKPSRTSEFDAFNTMQFQGDHITSGFVRAISTGNWSLKRFK----MERAG---VTHVLSR 456

Query: 445 MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           + ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I
Sbjct: 457 LSFVSALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 516

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +  +  + + +I + ++ +  + L    +       +V ++G I+G  L +     V   
Sbjct: 517 TTDVDEEPIIRI-AFMLGVEDISLATGTEIYGPHTFVVNVNGTIIG--LTRYPARFVSNF 573

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------- 614
           R L+  G         VY+    +       + + +  GR+ RP++ + +G         
Sbjct: 574 RRLRRAGRF--SEFVSVYINHHHR------TVLIASDGGRICRPMIIVESGRPKVMSEHI 625

Query: 615 ------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
                             +E++   E+    I +  K+  PG TTH E+     L  +A 
Sbjct: 626 AQLKQGQLTFDDFLRKGLVEYLDVNEENDSYIALYEKDIVPG-TTHLEIEPFTLLGAVAG 684

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           LIP P  NQSPRN YQC MGKQ +G    N   +    LY    P  P  +    + +  
Sbjct: 685 LIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGY 744

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    + +     +    N  GT  
Sbjct: 745 DRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPN--GT-- 800

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHM-VSDKWQTKDYFGRDPANKALEDKLGPDGLVYV 835
                               Y RL    V +  Q +  +          D + PDGL  V
Sbjct: 801 --------------------YDRLADAPVDETGQVQKKY----------DIIQPDGLAGV 830

Query: 836 GAK-------LNERDPMYSYWKESENRYVTCRYSG-----KEEMCVEVVRMSSGFTEGGS 883
           G +       +N++ P  +       +  T  Y       K  +  ++ ++    TE   
Sbjct: 831 GERVDPGDVYINKQTPTNANDNSFTGQAATVPYKNAPMTYKSPVAGQIDKVMITDTENDQ 890

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
                  +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+VPD + NPHGFP
Sbjct: 891 ---TLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFP 947

Query: 944 SRMTIG 949
           SRMT+G
Sbjct: 948 SRMTVG 953



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I +E G++Y G + + SG+ G  ++A ++FG ++YQ+
Sbjct: 964  GVLAGKLQYGTAFGGSKVEDMSRILIEKGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQK 1023

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            L+HMV DK   +    R    +   +    +G + +G    ERD +  Y
Sbjct: 1024 LKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEM--ERDCLIGY 1070


>gi|322784943|gb|EFZ11714.1| hypothetical protein SINV_06174 [Solenopsis invicta]
          Length = 1123

 Score =  236 bits (601), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 254/984 (25%), Positives = 418/984 (42%), Gaps = 174/984 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFE----IYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           HI S+++ ++E +   V+    I+ +     Y K L + + +  + +            N
Sbjct: 20  HIDSYNYFINEEIKNIVKANEKIQSDEDPHFYLKYLNIQVGRPKLQD--------SCTLN 71

Query: 128 KYY---PTEARQTRSVYSGPFNVTVAW---SWDGKAGG----TFTKEV-GRVPIMLKSKR 176
           + Y   P E R     YS P  V + +   + D K GG    T+ K V G +PIML+S  
Sbjct: 72  RDYDTTPHECRLRDLNYSAPIEVEIEYVRNNPDNKEGGGKQRTWKKVVIGMMPIMLRSSN 131

Query: 177 CHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLF 236
           C L   + +QL +  E P + GGYFI+ G EK+            I I+    +NR +L 
Sbjct: 132 CVLTKKSESQLAKLNECPHDPGGYFIINGQEKV------------ILIQEQMVRNRIVLE 179

Query: 237 SD----LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR------------KSMCLLGM 280
            D    +     S   D+    NV+      S ++   H             K+M ++  
Sbjct: 180 VDNKDCVVAACNSFTHDKKTKTNVV----GKSGKYYLRHNMFQDDILITIIFKAMGIVSD 235

Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL---------RHLNEV-------------- 317
           ++ +   G   ++  K  F    +E  + DL         ++LN                
Sbjct: 236 LEIMQMVGTQDKYLDK--FAASLEECQREDLNIFSQNQALKYLNSKRKQTRFHVPKSRVA 293

Query: 318 -EICDYMLTNCI--LPHLD-DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
            E+ D + TN +  +P +D ++  K L L+ M  ++ +       +D +D    + +   
Sbjct: 294 DEMKDAIATNILSHVPVIDFNFRPKALYLALMIRRVINAQSDRSLIDDKDYYGNKRLELA 353

Query: 374 GSL----YLQLLKK---------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVS 420
           GSL    +  L K+         +K+         DI    R   I + +   +++GN +
Sbjct: 354 GSLLALMFEDLFKRFNWELKQIADKNIPKIKAAAFDIAKHMRHDLITNGLAFAISSGNWT 413

Query: 421 AGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGF 478
             +      M+  G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG 
Sbjct: 414 IKRFR----MERHG---VTQVLSRLSYISALGMMTRVHSQFEKTRKVSGPRSLQGSQWGM 466

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQ 536
           +CP  TP+G  CGL+ +L     I+  +P K L  +   + +LG+  +  +   +   E 
Sbjct: 467 LCPNDTPEGEACGLVKNLALMAHITTEVPEKPLIDL---MRNLGVEDIYTLAGEELTKEG 523

Query: 537 ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYL 596
              V ++G + G +  Q    LV + R+L+  G     S   +Y +   K       + +
Sbjct: 524 VYTVFVNGIMAGIV--QNHKRLVKQFRLLRRAG--YINSFVSIYTQHRHK------CIQV 573

Query: 597 FTGPGRMLRPVMNLAAG----------NIEW-IGTFEQVFMD---------------ICI 630
            +  GR+ RP + +  G          ++E  I TFE    D               I  
Sbjct: 574 SSDGGRLCRPCIIVKHGKSLVKPKHIKDLERNITTFEDFLYDGLIEYLDVNEENDSLIAC 633

Query: 631 TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ 690
           T  E     TTH E+++   L   A LIP P  NQSPRN YQC MGKQ +G+   N R +
Sbjct: 634 TESEINED-TTHLEIAEFAILGVCAGLIPYPHHNQSPRNTYQCAMGKQAIGSIGENQRTR 692

Query: 691 GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYER 750
               +Y L     P  +    + ++ D  P G NAIVAV+SY+GYD+EDA+I NK+S +R
Sbjct: 693 IDTVMYNLAYSQRPIVKTRAIELINYDKLPAGENAIVAVMSYSGYDIEDALIFNKASIDR 752

Query: 751 GFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR---HMVSDK 807
           G+    ++++    L+   N      M   +D +  +      ++    +     +V +K
Sbjct: 753 GYGRCLVYRNAKCTLKKYANQTQDRIMGPSIDANTKKPLSKHEILDSDGIAAPGELVENK 812

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEM 867
               +     P+     + +GP   V  G          +   ++E R    +Y G    
Sbjct: 813 TVMVNKSVPAPS-----ENIGP---VRSG----------NVQTQTEYRNAEIQYKGLVPA 854

Query: 868 CVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
            VE V +S    +   V      +  R  R P +GDKF+SR GQKG+  +    ED+PF 
Sbjct: 855 YVEKVMISKNAEDAFLVK-----LLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFN 909

Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
           D G+ PDI+ NPHGFPSRMT+G L
Sbjct: 910 DYGMCPDIIMNPHGFPSRMTVGKL 933



 Score = 45.4 bits (106), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY G +  Y+G+ G  +   I+ G V+YQ+L+HMV DK   +
Sbjct: 968  KNGYNYLGKDFFYNGMTGRPLIGYIYSGPVYYQKLKHMVQDKIHAR 1013


>gi|358060336|dbj|GAA93741.1| hypothetical protein E5Q_00387 [Mixia osmundae IAM 14324]
          Length = 1152

 Score =  236 bits (601), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 231/915 (25%), Positives = 379/915 (41%), Gaps = 160/915 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  V V ++   +   +  + +GR+P+ML+S +C L +  P Q+   
Sbjct: 111 PQECRLRDMTYAAPIYVDVIYAKGSRNVVSKKQLIGRIPVMLRSNKCVLWDKDPEQMQSL 170

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLG--------VY 242
            E P + GGYF+V G EK++ +     +N  +        ++G++ S            Y
Sbjct: 171 TECPLDPGGYFVVKGTEKVILVQEQLSKNRVLVENDGRGPSKGIIASVTSSTLERKSKTY 230

Query: 243 IRSVKRDESATNNVLH-----FVTNGSARFMFSHRKSMCLLGMMQSLHEE---------- 287
           +    +     +N LH      +   +   +  H   + + G    L E           
Sbjct: 231 VAEKSKKIVLRHNSLHEDVPIVIALKALGIVGDHEIMLLVCGTSPELRERFAINFEDSTR 290

Query: 288 -GIHTQHDSKVFFGQIFKEKLQYDLRHLNEV-----EICDYMLTNCILPHLD----DYWD 337
            GI+T+  +  + G   K   +      N V     E    +L   +L H+     ++  
Sbjct: 291 LGIYTRTQALEYVGHRVKLSKRVAPGGNNFVRRPVAEEALELLATLVLAHVPVENLNFRP 350

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGT 388
           K + ++ M  ++   +      D  D +  + +   G L L LL ++         K+  
Sbjct: 351 KAIYMALMIRRVLAAMLDPTMTDDRDYVGNKRLELAGQL-LSLLFEDLFKLFNRDFKTNV 409

Query: 389 SAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMAENINR 444
             +LK+      F    + S  T  +  G V A       L    M+ +G   +   ++R
Sbjct: 410 DKMLKKPSRTNEFDGLKVLSMQTGSITDGFVRAIATGNWSLKRFRMERAG---ITHVLSR 466

Query: 445 MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           + Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I
Sbjct: 467 LSYISALGMMTRITSQFEKTRKVSGPRALQASQWGMLCPSDTPEGEACGLVKNLALMTHI 526

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +  +    L ++  VL    +  +T      P    +V L+G ++G  L Q       + 
Sbjct: 527 TTDVEETSLWRLAYVLGLEDVCNVTGTELYAP-GTFVVYLNGVLLG--LTQEPRVFTQRF 583

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM------------NL 610
           R  +  GE I + + I Y+   +        +++ +  GR+ RP++            ++
Sbjct: 584 RAFRRAGE-ISEFVSI-YINTQQA------AIHIASDGGRICRPMIIVDRGRPRVTDAHI 635

Query: 611 AA--------------GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
           AA              G IE++   E+    I +  ++     TTH E+     L  +A 
Sbjct: 636 AALRASMKTFDDFLKEGLIEYLDVNEENDAHIALYERD-IKKFTTHLEIEPFTLLGAVAG 694

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P       + +  
Sbjct: 695 LIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQLARIDTLLYLMVYPQRPLVTTKTIELVKY 754

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           D  P G NA+VAV+S++GYD+EDA+ILN++S +RGF    +F+         Y+ Y    
Sbjct: 755 DQLPAGQNAMVAVMSFSGYDIEDALILNRASVDRGFGRCQVFRK--------YSTY---- 802

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP---ANKALEDKLGPDGLV 833
                            +  Y            T D     P   +++  + K+  DGL 
Sbjct: 803 -----------------IKQYPN---------NTHDRLADPPPPDSDRHRKYKVDADGLP 836

Query: 834 YVGAKLNERD-------------------PMYSYWKESENRYVTCRYSGKEEMCVEVVRM 874
            VG ++ E D                    M S+W+++   Y       +  M   + ++
Sbjct: 837 AVGDRVKEGDIYVNKQTPSNATDNSSTASSMPSHWRDAVMTY-------RANMNGHIDKV 889

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
                E G+       I  R  R P +GDKF+SR GQKG+C +  P ED+PFTD G+ PD
Sbjct: 890 MLSDMENGT---QLVKILMRQTRRPELGDKFSSRHGQKGVCGLIVPQEDMPFTDQGICPD 946

Query: 935 IVFNPHGFPSRMTIG 949
           I+ NPHGFPSRMT+G
Sbjct: 947 IIMNPHGFPSRMTVG 961



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GY+Y G + + SG+ G  +++ +FFG + YQ+L+HMV DK   +    R    +   
Sbjct: 997  IQAGYSYAGKDYLTSGITGQALESYVFFGPIFYQKLKHMVIDKMHARSRGPRATLTRQPT 1056

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    DG + +G    ERD + ++              G   + +E + +SS   E   V
Sbjct: 1057 EGRSRDGGLRLGEM--ERDCLIAH--------------GASHLLLERLMLSSDAFE-VDV 1099

Query: 885  TPNCAYIGY 893
              +C ++GY
Sbjct: 1100 CQSCGFMGY 1108


>gi|402589446|gb|EJW83378.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
          Length = 947

 Score =  236 bits (601), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 249/990 (25%), Positives = 409/990 (41%), Gaps = 186/990 (18%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           HIAS+D+ +   +       D    D  P     Y K L + +         +P+   G 
Sbjct: 31  HIASYDYFVSTEIKKILRANDRITSDANP---SFYLKYLDIRV--------GMPSSEEGF 79

Query: 125 H--FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           +   +K  P E R     YS P +V + ++   +        +G++P+ML+S +C L+N+
Sbjct: 80  NQINDKISPHECRLRDMTYSAPISVDIEYTRGSQRVLRNGLIIGKMPVMLRSSKCVLKNM 139

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
             ++L    E P + GGYFI+ G EK+V L+      + I I RN+ K       +L   
Sbjct: 140 NESELARVQECPYDPGGYFIIRGSEKVV-LIQEQLSKNRIMIGRNSKK-------ELQCE 191

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG-- 300
           + S  ++  +      ++ +   R+   H +    + +       G  + HD     G  
Sbjct: 192 VLSSTQERKSKT----YIASRKQRYYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAVGLE 247

Query: 301 -----------------QIFKEK--LQY-----DLRHL-----------NEVEICDYMLT 325
                            QI  ++  LQY      +R              E E  D+ L+
Sbjct: 248 EKFVAAMAPSIEECASHQIVTQEGALQYIASKVKMRKFGPTASGTSTLPREHEAIDF-LS 306

Query: 326 NCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----Y 377
           N ++ H+     +   K + L  M  +L     G  + D  D    + +   GSL    +
Sbjct: 307 NLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLELAGSLLALLF 366

Query: 378 LQLLKKEKSGTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQ 428
             + K+  S    +   S         DI    R   I +A+ + LATGN +  +     
Sbjct: 367 EDVFKRFNSELKRIADNSLGKTLAAPLDIVKHVRQDLITNALVDALATGNWTIKRFK--- 423

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPD 486
            M+  G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+
Sbjct: 424 -MERQG---VTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPE 479

Query: 487 GTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV-IQSIPEQAL-MVMLDG 544
           G  CGL+ +L     I+     K + ++   L + G+  +  +   +I   A  +V L+G
Sbjct: 480 GESCGLVKNLALISHITTDSDEKPVIRL---LYNAGVEDVKSLHFSAIHSPAYHIVFLNG 536

Query: 545 RIVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
            IVG  +D Q   S +  +R   ++ E +  S                  +Y+ +  GR+
Sbjct: 537 VIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTN-----------AAQRSVYIASDGGRL 585

Query: 604 LRPVMNLAAGN--------------------------IEWIGTFEQVFMDICITMKEAYP 637
            RP + +  G                           IE++   E     I +   +  P
Sbjct: 586 CRPYIIVKNGVPQVTQEHIEELKKGCRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKP 645

Query: 638 GITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
             TTH E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y 
Sbjct: 646 -TTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYL 704

Query: 698 LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
           L  P  P  +    +  + +  P G NAI+AV+SY+GYD+EDA++LNK+S +RG+    +
Sbjct: 705 LVYPQRPLVKTKTIEFCNFEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLV 764

Query: 758 FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH----MVSDKWQTKDY 813
           +K      ++    Y  +T +  + G  ++A     +  +Q L       V    ++K  
Sbjct: 765 YK----HAKATARKYPNQT-FDRLMGPTIEATTRKPIYKHQVLDQEGIVYVGACIRSKQV 819

Query: 814 F------------GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRY 861
                        G   +N       G  G+ Y    +  R+P+ SY +      V   Y
Sbjct: 820 MINKHMPVVSMEAGATVSNNDGTSVGGSHGVEYKDVSVVYRNPIPSYAER-----VLLTY 874

Query: 862 SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
           +  +   ++V+                     R  R P +GDKF+SR GQKG+C +    
Sbjct: 875 NEDDAHLIKVL--------------------LRQTRRPELGDKFSSRHGQKGVCGLIAQQ 914

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ED+PF D G+ PD++ NPHG+PSRMT+G L
Sbjct: 915 EDMPFNDLGMCPDMIMNPHGYPSRMTVGKL 944


>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
           5456]
 gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
           5456]
          Length = 1138

 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 242/985 (24%), Positives = 399/985 (40%), Gaps = 179/985 (18%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++  +++ L   V++   I      +  ++ IV   + EP V       H     P
Sbjct: 29  HIDSYNRFIEKELKEIVKEFGTISTP--RREYEVRIVDVELGEPIVIESDGSEH--PVTP 84

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSK-----RCHLRNLT--- 183
            E R     Y+ P    V    +G         +G +P+ML+SK     RC     +   
Sbjct: 85  MECRIRDLTYAAPIKAKVVIVENGIEREAEEIILGFLPVMLRSKADPLARCMYEGKSWKE 144

Query: 184 -PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--- 239
              +LIE GE P + GGYFI+ G E+++ +  +   N  +  K  A     L  + +   
Sbjct: 145 CEQKLIEAGEDPRDPGGYFIINGSERVIVIQEDQALNRILVGKARAGTASALYTAKVISA 204

Query: 240 --GVYIRSVKRDESATNNVLH-----------FVTNGSARFMFSHRKSMCLLG------- 279
             GV  + +   +   +  LH           FV    A  + S R  +  +        
Sbjct: 205 HAGVRYQVIL--DYHKDGTLHVSMSRALSKIPFVILMRALGLESDRDIVLAVSPDPQIQQ 262

Query: 280 -MMQSLHE-EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----D 333
            ++ SL +   I+T  D+  + G  F+E L         + + + +L   + PH+     
Sbjct: 263 MLIPSLEQARAINTVEDALDYVGSRFREGLAKPREQ--RIRVAERILDTILFPHIGTSPK 320

Query: 334 DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQL-----------LK 382
           D   K L L  M  KL   V G  + D +D    + ++  G L   +           ++
Sbjct: 321 DRIRKALFLGQMAAKLLEYVAGRRKEDDKDHYANKRVLLAGDLIAMVFRIAMRALAYDIR 380

Query: 383 KEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
           ++     A  +   +    R+  I + +   LATGN    +    Q++  + ++ M  ++
Sbjct: 381 QQLEKLRARGRHISLRMIIRSDIITNRLREALATGNWPGQRTGVSQILDRTNWLSMLSHL 440

Query: 443 NRM-----RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
            R+     R   HF               E R +    WG ICP  TP+G  CGL+ +L 
Sbjct: 441 RRVVSQLSRTQPHF---------------EARDVHGTQWGRICPFETPEGPNCGLVKNLA 485

Query: 498 TNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL---------MVMLDGRIVG 548
               +S  +  K    +  +L S+G+     + + + +Q            V L+GR++G
Sbjct: 486 LMAYVSAGVDDK---DVEKLLYSMGVRDAVELFEEVRKQGYYPPEYIKWSKVFLNGRLIG 542

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
           Y  D     L  +LR L+  G+   +    VY  R E        +Y+ T PGR++RPV 
Sbjct: 543 YHPD--GEKLAEELRKLRRSGKLHYEVSVSVY--RTET----INEVYINTDPGRIMRPVF 594

Query: 609 NLAAGN--------------------------IEWIGTFEQVFMDICITMKEAYPGITTH 642
            + +G                           +E++   E+    I +  ++  P   TH
Sbjct: 595 VVESGKLLYRPEHAEKLRKGEWRFSDLVRNGIVEFLDAEEEENTYIALNPEDLTPE-HTH 653

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+         A+ IP  + NQSPRN YQ  M KQ +G    N++ +   + + L  P 
Sbjct: 654 MEIWPAGIFGVTASTIPYAEHNQSPRNTYQAAMAKQALGLYAANFQIRVDTRSHLLHYPE 713

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P  +    + +  ++ P G N +VAV+S+TGY++EDA+I+NKSS +RG A    F+   
Sbjct: 714 KPLVQTRALELMGYNDRPAGQNMVVAVMSFTGYNIEDAVIMNKSSIDRGLARSTFFR--- 770

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
                    Y TE                      +R    +SDK +  +          
Sbjct: 771 --------LYATEE---------------------RRYPGGLSDKIEIPEANVEGSKPPE 801

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---------VTCRYSGKEEMCVEVVR 873
           +  KL  DG++    ++   + +    K S  R+         VT R   K +  V +  
Sbjct: 802 MYKKLDADGIISPEVEVKGGEVLIG--KTSPPRFMEEYREFGTVTVR---KRDTSVTMRH 856

Query: 874 MSSGFTEGGSVTPNCAYIGYRI-------QRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
              G  +   +T N    GY++       QR P +GDKFASR GQKG+  +  P  D+PF
Sbjct: 857 GEKGVVDTVIITENIE--GYKLVKVRVRDQRIPELGDKFASRHGQKGVIGMLIPQYDMPF 914

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           T+ G+ PD++ NPH FPSRMT+G L
Sbjct: 915 TEDGITPDLIINPHAFPSRMTLGQL 939



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 23/131 (17%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F  G  F    IE      L++GY   GTE MY G  G M++  I  G+V+YQ+L HMV+
Sbjct: 954  FVDGTPFAKESIENLRIELLKTGYAPDGTEIMYDGRTGEMIRTPILIGLVYYQKLHHMVA 1013

Query: 806  DKWQTK-----DYFGRDPAN-KALE-----DKLGPDGLVYVGAKLNERDPMYSYWKESEN 854
            DK   +         R P   +A E      ++  D LV  GA +  R+ M     ES +
Sbjct: 1014 DKIHARARGPVQVLTRQPTEGRAREGGLRFGEMERDCLVGHGAAMLLRERML----ESSD 1069

Query: 855  RYV--TCRYSG 863
            RYV   C   G
Sbjct: 1070 RYVLYVCELCG 1080


>gi|343427664|emb|CBQ71191.1| probable DNA-directed RNA polymerase III, 130 KD subunit
           [Sporisorium reilianum SRZ2]
          Length = 1170

 Score =  235 bits (600), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 236/959 (24%), Positives = 401/959 (41%), Gaps = 127/959 (13%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+++ +D  L   ++    I  +I  K   L      + EP+   G          P
Sbjct: 67  HIDSYNYFVDHDLKNIIKANEKITSDIDPK-FYLKYTDITVGEPRRYDGDA--LQRPITP 123

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     YS    V + ++  GK        +GR+P+ML+S +C L N +  +L +  
Sbjct: 124 HECRLRDITYSAHIFVNIEYTRGGKIIRRKNVAIGRIPVMLRSNKCVLANKSEKELAKMS 183

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDES 251
           E P + GGYF+V G EK++ +     +N  I     A   +G + + +       K    
Sbjct: 184 ECPLDPGGYFVVKGTEKVILVQEQLSKNRIIV---EADTKKGTVSASVTSSTHERKSKSY 240

Query: 252 A---------TNNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE----------- 287
                      +N LH          A  + + R+ + L+     +H+E           
Sbjct: 241 VLTKHGKIYLKHNSLHEDIPIAVAFKAMGIQADREILQLVAGHDDIHKELFAINLEEAAR 300

Query: 288 -GIHTQHDSKVFFGQIFKEKLQ-YDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
            GI+T+  +  + G   K   +   +R     E  D +L   I+ H+     ++  K + 
Sbjct: 301 LGIYTRKQALDYIGARAKASRKPLSMRRPLAEEALD-VLATVIMAHVPVERLNFRPKAIY 359

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS----GTSAVLK 393
           ++ M  ++   +Q   ++D  D +  + +   G L    +  L KK  S        VLK
Sbjct: 360 IASMVRRVLMAMQDEKKVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKINIDKVLK 419

Query: 394 ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMAENINRMRYMS 449
           + +    F A +      +++  G V A       L    M+ +G   +   ++R+ +++
Sbjct: 420 KPNRTVEFDAFNQFHFNGDYITAGFVRAISTGNWSLKRFKMERAG---ITHVLSRLSFIA 476

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 477 ALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVE 536

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
            + +A+I   L    +  LT      P+ + +V L+G ++G  + +     V + R L+ 
Sbjct: 537 EEPIARIAFTLGVEDIHLLTGAELYRPD-SYVVYLNGNVLG--VTRFPQRFVHQFRRLRR 593

Query: 568 VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA--------------- 612
            G +I + +  VY     +       +Y+ +  GR+ RP++ + A               
Sbjct: 594 AG-RISEFVS-VYTNNHHQT------VYIASDGGRICRPLIIVDAVTGQPRVTESHMRQL 645

Query: 613 -------------GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIP 659
                        G IE++   E+   +I +  +E  P  TTH E+     L  +A LIP
Sbjct: 646 KSGARRFDDFLSNGLIEYVDVNEENDANIAMYEREIKPQYTTHLEIEPFTLLGAVAGLIP 705

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
            P  NQSPRN Y C M KQ  G    N   +    LY +  P  P  +    + +  D  
Sbjct: 706 YPHHNQSPRNTYHCAMAKQAQGFIGHNQLVRIDTLLYLMLYPQQPMVKSRTVELVGYDKL 765

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P GTNA++AV+S++GYD+EDA++LNK+S +RGF      K     +    N        +
Sbjct: 766 PGGTNAMLAVMSFSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDRLADA 825

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK-----LGPD---- 830
            VD S  + Q  + ++    +  +     Q   Y  +     A ++      +G      
Sbjct: 826 PVDDSTGKRQKRYDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIGASNAAA 885

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
            + Y  A L+ + P+  Y  +     V    +  ++  ++ +                  
Sbjct: 886 SVAYKSAPLSYKPPVSGYVDQ-----VLITDTDSDQTLIKAL------------------ 922

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
              R  R P +GDKF+SR GQKG+  +    ED+PFTD G+ PDI+ NPHGFPSRMT+G
Sbjct: 923 --IRQTRRPELGDKFSSRHGQKGVIGLIVQQEDMPFTDEGINPDIIMNPHGFPSRMTVG 979



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +E GYNY G ET+ SG+ G  ++  ++FG ++YQRL+HMV DK   +    R    +   
Sbjct: 1015 VEHGYNYAGKETLTSGITGQPLECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQPT 1074

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1075 EGRSRDGGLRLGEM--ERDCLIGY 1096


>gi|307178142|gb|EFN66950.1| DNA-directed RNA polymerase III subunit RPC2 [Camponotus
           floridanus]
          Length = 1120

 Score =  235 bits (600), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 224/906 (24%), Positives = 387/906 (42%), Gaps = 142/906 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V +    + +        +GR+P+ML+S  C L N +  +L + 
Sbjct: 82  PHECRLRDLNYSAPIIVDIEHIRNNQRIRNTNMVIGRMPVMLRSSNCVLTNKSHYELAKL 141

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYF++ G EK++         R+++       IA   +    +    S +G 
Sbjct: 142 NECPHDPGGYFVINGQEKVILIQEQMVRNRIIVEEDGKEIIASCNSFTHEKKTKTSIVGK 201

Query: 242 YIRSVKRDESATNNVL--------HFVTNGSARFMFSHRKSMC--LLGMMQSLHEEGIHT 291
             +   R+    +++L          V++     M   ++      +  +++  E GI +
Sbjct: 202 AGKYYIRNNMFQDDILITVVFKAMGIVSDIDIIQMIGEKEKYLDKFIACIENCQELGIFS 261

Query: 292 QHDSKVFFGQIFKE---KLQYDLRHLNEVEICDYMLTNCI--LPHLD-DYWDKFLCLSHM 345
           +  +  +     ++      Y  +     E+ D +  N +  +P +D ++  K L L+ M
Sbjct: 262 EKQALKYLNNKRRQTRSAQSYAAKFSVIDEMKDLLAANVLSHVPVIDFNFRTKALHLALM 321

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTSAVL 392
             ++         +D++D    + +   GSL    +  L K+         +K+      
Sbjct: 322 IRRVIDAQSDRNLIDNKDYYGNKRLELAGSLLALMFEDLFKRFNWELKMIADKNIPKVKA 381

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
              DI    R  +I + +   +++GN +  +      M+  G   + + ++R+ Y+S   
Sbjct: 382 APFDITKYIRKDTITNGLAFAISSGNWTIKRFR----MERHG---VTQVLSRLSYISALG 434

Query: 453 AVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            + R  S F++ R  S PR L    WG +CP  TP+G  CGL+ +L     I+  +P   
Sbjct: 435 MMTRVHSQFEKTRKISGPRALHGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEMPEGP 494

Query: 511 LAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
             ++   + +LG+  +   +  + I +   +V ++G + G I + +   LV + R+L+ +
Sbjct: 495 FIKL---MRNLGVQIIYTCVGGELIKKDIYVVFVNGNMAGIIKESLVLQLVHQFRLLRRM 551

Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV-------------------MN 609
           G  I   + I   +R       +  + +    GR+ RP+                   MN
Sbjct: 552 G-YIDCFVSISVQRR-------HKCVQVSCDGGRLCRPLIIVKDGKPLIEEKHMNYLEMN 603

Query: 610 L-------AAGNIEWIGTFEQVFMDICITMKEA-YPGITTHRELSKTDFLSNLANLIPMP 661
           L        AG IE++   E+   D  I  KE+     TTH E+++   L   A LIP P
Sbjct: 604 LWTFNDFVHAGLIEYLDVNEE--NDSLIACKESEIIAQTTHLEIAEFTILGVCAGLIPYP 661

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           + NQSPRN YQC MGKQ +G    N R +    +Y L  P  P  +    + ++ D  P 
Sbjct: 662 NHNQSPRNTYQCAMGKQAIGAIGYNQRNRIDTLMYNLVYPQRPIVKTRQIELINFDKLPA 721

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G NA+VAV+S++GYD+EDA+ILNK+S +RG+    ++++    +++  N           
Sbjct: 722 GENALVAVMSFSGYDIEDALILNKASIDRGYGRCLVYRNSKCIIKNHPNQV--------- 772

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
                   +  G               Q+ D   + P  K   D L  DG+   G  +  
Sbjct: 773 ------MDVILG---------------QSLDAITKKPIPK--HDILENDGIAAAGVMVEN 809

Query: 842 RDPMYSY----------------WKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
           +  M +                 ++  + R     Y G     +E V +SS       + 
Sbjct: 810 KKVMVNKAVSTRSGNLGPSRSDNFQSQDYRSAEVSYKGSVPAYIEKVMVSSNAENAFLIK 869

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                +  R  R P +GDKF+SR GQKG+  +    EDLPF D G+ PD++ NPHGFPSR
Sbjct: 870 -----LLLRQTRRPEIGDKFSSRHGQKGVVGLIVDQEDLPFNDYGICPDVIMNPHGFPSR 924

Query: 946 MTIGFL 951
           MT+G L
Sbjct: 925 MTVGKL 930



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIEL-ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A I+N   ++     G   + +  EL + GYNY G +  YSG++G  +   +FFG V+YQ
Sbjct: 938  AGIVNGKFHDATAFEGAKVEDLCEELAQHGYNYLGKDLFYSGMNGQPITGYLFFGPVYYQ 997

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            +L+HMV DK   +    +    +   +    DG + +G    ERD +  Y
Sbjct: 998  KLKHMVQDKIHVRAKGPKVILTRQPTEGRSKDGGLRLGEM--ERDCLIGY 1045


>gi|169597943|ref|XP_001792395.1| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
 gi|160707624|gb|EAT91415.2| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score =  235 bits (599), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 248/918 (27%), Positives = 381/918 (41%), Gaps = 168/918 (18%)

Query: 125  HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
            H +   P E R     Y+ P  V + ++           ++GR+PIMLKS +C L     
Sbjct: 406  HRSTVTPNECRLRDMTYAAPIVVDIVYTRGSAKVKRTGIKIGRMPIMLKSNKCVLAAKND 465

Query: 185  AQLIERGEHPDEWGGYFIVGGHEK--LVRLLINNRR-----------------NHPIAIK 225
             ++    E P + GGYFI  G EK  LV+  +N  R                  H    K
Sbjct: 466  REMAVMDECPLDPGGYFITRGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTK 525

Query: 226  RNAWKNRGLLF----------------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
                + +GL+F                  LGV+         +   +L  +    A +  
Sbjct: 526  TYVIQKKGLMFLRHNTLSEEVPIVFVLKALGVH---------SDKEILLMIAGTDAAYQD 576

Query: 270  SHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG---QIFKEKLQYD-LR--HLNEVEICDYM 323
            S   +       ++   EGIHTQ  +  + G   ++ K+ L    +R  HL  +E     
Sbjct: 577  SFAINF------EACAREGIHTQEKALEYIGHRVRLVKKPLGTSRMRNYHLEAIEC---- 626

Query: 324  LTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQ 379
            L N +LPH+     +Y  K L ++ M  ++   +Q    +D  D +  + +   G +   
Sbjct: 627  LANVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLELSGQMLSL 686

Query: 380  LLKKE--------KSGTSAVLKESDIYAAFRASSIESAMTNFLATG--NVSAGKNSTLQL 429
            L +          K     VLK+ +    F A S  S   N +  G     A  N +L+ 
Sbjct: 687  LFEDHFKRFNHDFKLSIDKVLKKQNRAQEFDAFSHFSVHKNHITMGIERAIATGNWSLKR 746

Query: 430  --MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTP 485
              M  +G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +C   TP
Sbjct: 747  FKMDRAGVTHV---LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTP 803

Query: 486  DGTPCGLLNHLTTNCQIS-----------------EYIPSKVLAQIPSVLVSLGMLPLTP 528
            +G  CGL+ +L     I+                 E I S+   +I    V    L  TP
Sbjct: 804  EGEACGLVKNLALMTHITTEDDEDPVRKIIFLLGAEEICSQTGEEIHREGVYSVCLNGTP 863

Query: 529  V-IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE--KIPKSLEIVYLKRPE 585
            + I  IP++ L      R +G I +  +  +      + +  +  +I + + +V  +R +
Sbjct: 864  IAITDIPKRFLNSFRKLRRMGRISEFTSIHINHDFCEVHVATDEGRICRPMIVVENQRSK 923

Query: 586  KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEA-YPGITTHRE 644
                   G YL       +     L  G +E++ T E+   D  I +KE      TTH E
Sbjct: 924  -----VTGRYLKALRKGTMEFEDFLTRGLVEYLDTNEE--NDTNIALKETDINQHTTHLE 976

Query: 645  LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
            +     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P
Sbjct: 977  IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTILYLMVYPQEP 1036

Query: 705  FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
              +    +    D  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF    + K +  +
Sbjct: 1037 MVKTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKVSHQ 1096

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L+S  N  GT                              SD+         DP ++A  
Sbjct: 1097 LKSYAN--GT------------------------------SDRINAGALKVDDPTHQA-- 1122

Query: 825  DKLGPDGLVYVGAKLNERD-------------PMYSYWKESENRYVTCRYSGKEEMCVEV 871
              +G DG+  VGA++N+ D             P  + +K+   +Y     S  +++C+  
Sbjct: 1123 --IGQDGIAQVGARINQGDAFLLKAIPQDTAGPPSTTYKDKPEKYKLPDCSYIDKVCI-- 1178

Query: 872  VRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGL 931
                   TE  + T     I  R  R P +GDKF+SR GQKG   +    ED+PF D G+
Sbjct: 1179 -------TENEAGT-TLIKILNRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGI 1230

Query: 932  VPDIVFNPHGFPSRMTIG 949
             PDI+ NPHGFPSRMT+G
Sbjct: 1231 NPDIIMNPHGFPSRMTVG 1248



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN +  Y   F    +     I +  G++Y G + + SG+ G   Q   FFG ++YQ
Sbjct: 1258 AGVLNGTLEYGTAFGGSRVEDMADILVSKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQ 1317

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
            +L+HMV DK   +    R    +   +    DG + +G    ERD + +Y          
Sbjct: 1318 KLKHMVQDKMHARARGPRAILTRQPTEGRARDGGLRLGEM--ERDCLIAY---------- 1365

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                G  ++ +E + +SS       V   C  +GY
Sbjct: 1366 ----GASQLLLERLMISSD-AHNVDVCEKCGQMGY 1395


>gi|353247551|emb|CCA77052.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
           [Piriformospora indica DSM 11827]
          Length = 268

 Score =  235 bits (599), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 129/258 (50%), Positives = 170/258 (65%), Gaps = 10/258 (3%)

Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
           M NFLATGN+ +   + L L QA+GF I+AE +N  RY+SHFR VHRG++F E++++  R
Sbjct: 1   MVNFLATGNLVS--PTGLDLQQAAGFTIVAEKLNWYRYISHFRCVHRGAFFAELKTTTVR 58

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML-PLTP 528
           +L  ++WGFICPVHTPDG+PCGLLNHL+ +C+I    P K  A +P++L SLGM     P
Sbjct: 59  KLLPESWGFICPVHTPDGSPCGLLNHLSHSCRIITN-PIKA-AHLPTILGSLGMTQAFAP 116

Query: 529 VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKG 587
            +     ++L V LDG++VG+    +A  L   LR+LK  G E +P  LEI ++  P   
Sbjct: 117 SVDG--SKSLCVQLDGKVVGWATPSLAKHLATTLRILKTEGRENVPLDLEIGFV--PVSQ 172

Query: 588 MGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
            G YPGLYLFT   RM+RP   L  G  + IG+FEQV+MDI I  +E  P ITTH EL+ 
Sbjct: 173 GGQYPGLYLFTSRARMMRPARYLPNGRDDSIGSFEQVYMDIAIKPEEIDPTITTHLELAP 232

Query: 648 TDFLSNLANLIPMPDCNQ 665
           T+FLS LANL P  D NQ
Sbjct: 233 TNFLSILANLTPFSDFNQ 250


>gi|302790720|ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
 gi|300155103|gb|EFJ21736.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
          Length = 1386

 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 235/909 (25%), Positives = 377/909 (41%), Gaps = 162/909 (17%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGK-------AGGTFTKEVGRVPIMLKSKRCHLRNLT 183
            P + R     YS P +V + ++  GK         G   + +GR+P+ML+S RC L   +
Sbjct: 349  PQQCRLRDMTYSAPISVDIEYTR-GKDIITRKGKDGQGAQVIGRMPVMLRSSRCILTGKS 407

Query: 184  PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----- 238
             A+L + GE P + GGYF+V G EK+            I I+    KNR ++ SD     
Sbjct: 408  DAELAKLGECPLDPGGYFVVKGTEKV------------ILIQEQLSKNRIIIDSDSTGSV 455

Query: 239  LGVYIRSVKRDESATNNVLH----------------FVTNGSARFMFSHRKSMCLLGM-- 280
                  S    +S TN ++                  V    A  M S ++ + ++G   
Sbjct: 456  TASVTSSTHERKSKTNIIIKHEKIYVKLNVFSDDVPIVVVMKAMGMESDQEIIQMVGTDP 515

Query: 281  ---------MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-NEVEICDYMLTNCILP 330
                     MQ     G++T H +  + G   +   Q+  +   ++V+    +L N  L 
Sbjct: 516  KFAGILAPSMQECASLGVYTTHQALEYLGTKVRVNRQWGSKQTKSKVDEARDILLNVFLA 575

Query: 331  HLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLK 382
            H+     D+  K + ++ M  ++   +     +D  D +  + +   G L    +  L K
Sbjct: 576  HVAVHRYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNKRLELAGQLLALLFEDLFK 635

Query: 383  KE----KSGTSAVLK------ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
            +     KS     L       + D+  + +   + S + N +++GN +  +      M  
Sbjct: 636  RSCSELKSNVDRTLSKMNRASQYDVSKSLKPDMLTSGLENAISSGNWTVKRFR----MDK 691

Query: 433  SGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGL 492
             G   +   ++ +  + H   V   S F++ R           WG +CP  TP+G  CGL
Sbjct: 692  KGVTQVVSRLSYIAALGHMTRV--ASQFEKSRK----------WGMLCPCDTPEGEGCGL 739

Query: 493  LNHLTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVG-Y 549
              +L     I+        A +  +  +LG+  + L    +   + A +VM +G I+G +
Sbjct: 740  TKNLALMTHIT---TDDEEAPLIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNGTILGIH 796

Query: 550  ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
               Q   +L+ KLR    +GE +      +++   ++       +Y+ +  GR+ RPV+ 
Sbjct: 797  RRPQQFATLMRKLRRAGKIGEFVS-----IFVNEKQRC------IYIASDGGRVCRPVVI 845

Query: 610  --------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
                                      L  G +E++   E+    I +  KEA    TTH 
Sbjct: 846  ADHGVSRIKEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNALIALYEKEA-DSTTTHI 904

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            E+     L   A LIP P  NQSPRN YQC MGKQ MG    N   +    LY L  P  
Sbjct: 905  EIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLQRIDTLLYLLVYPQR 964

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P       + ++ D    G NA VAV+SY+GYD+EDA+++NK+S +RGF   CI    F 
Sbjct: 965  PLLTTKSIELVNYDKLGAGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGR-CIVLKKFS 1023

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
             L   Y     + + +        +Q+       Q     V ++   KD F    + K +
Sbjct: 1024 CLVRKYENRTMDRIVAPRQHGHATSQLL-----DQDGIASVGERIYDKDIFVNKESPKDV 1078

Query: 824  EDK-LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK--EEMCVEVVRMSSGFTE 880
            +   L P  L                  +S  R    RY G   E   V+ V +++   E
Sbjct: 1079 KTTFLNPLAL-----------------PDSAYRPTPQRYKGPLGESAIVDKVLLTT--NE 1119

Query: 881  GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
               +   C     R  R P +GDKF+SR GQKG+C      +D PFT+ G+ PD++ NPH
Sbjct: 1120 SQQMVIKCQ---VRHTRRPELGDKFSSRHGQKGVCGTIVEQQDFPFTERGVCPDLIMNPH 1176

Query: 941  GFPSRMTIG 949
            GFPSRMT+G
Sbjct: 1177 GFPSRMTVG 1185



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G  +QA I+ G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1226 VKHGFSYCGKDLIYSGITGCPLQAYIYMGPIYYQKLKHMVLDKMHARAQGPRVVLTRQPT 1285

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    +G + +G    ERD + +Y              G   + +E + +SS   +   V
Sbjct: 1286 EGRSREGGLRLGEM--ERDCLVAY--------------GSSMLILERLMISSDQFQ-VQV 1328

Query: 885  TPNCAYIGY 893
              NC  +GY
Sbjct: 1329 CTNCGLLGY 1337


>gi|344303893|gb|EGW34142.1| DNA-directed RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
          Length = 1155

 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 254/1009 (25%), Positives = 416/1009 (41%), Gaps = 179/1009 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L       +L + D+ P 
Sbjct: 29  KKLTDE-INTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDP- 86

Query: 95  EFEIYGKTLKLNIV-KAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW 153
             E Y K L + +  ++     K+   P         P + R     YS P  V V ++ 
Sbjct: 87  --EFYLKYLDIRVGHRSKTPNDKLVLMP---------PHQCRLRDLTYSAPIFVDVEYTR 135

Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV--- 210
             K       E+GR+PIML+S +C L       +    E P + GGYFIV G EK++   
Sbjct: 136 GRKIIVHTDLEIGRMPIMLRSNKCILDGADDNTMARYDECPLDPGGYFIVNGTEKVILVQ 195

Query: 211 ------RLLI-----------------NNRRNHPIAIKRN--AWKNRGLLFSDLGVYIRS 245
                 R+++                 + R++    I +N   +     +  D+ + I  
Sbjct: 196 EQLSKNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNDKIYLKHNSISEDIPIVIIL 255

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                ++   +L  V      +     + + ++   ++   E + TQ  +  + G+  K 
Sbjct: 256 KAAGITSDLEILQLVCGSDPNY-----QDLFVVNFEEAARLE-VFTQQQALNYVGKRVKT 309

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
             +     L++++     +   I+ HL      + +K L ++ M  ++   +     +D 
Sbjct: 310 IRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFKEKALYIATMARRVIMTMHNPTMVDD 369

Query: 362 EDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATG 417
            D +  + +   G L    +  L KK  S   A + +  +    R S  ++ ++  + + 
Sbjct: 370 RDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKV-LKKPSRTSEFDALLSINIHSN 428

Query: 418 NVSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-S 466
           N++ G N  +           M+ +G   +   ++R+ Y+S    + R  S F++ R  S
Sbjct: 429 NITMGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVS 485

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGM 523
            PR L+   +G +C   TP+G  CGL+ +L     I+   E +P K L  +      LG 
Sbjct: 486 GPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPIKKLCYM------LGC 539

Query: 524 LPLTPVIQSI--PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYL 581
            P+  V  +    E    + ++G +VG    +     V   R L+  G K+   + I   
Sbjct: 540 EPILGVDSATLHDEGNFGIHVNGTLVGTT--RFPGKFVENFRKLRRTG-KVSAFISIHTN 596

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVM-------NLAAGNIEWIGTFEQVFMDICITMKE 634
              +        +++ T  GR+ RP++        + A ++  +   E  F D  +    
Sbjct: 597 THQQ-------AVHIATDGGRICRPLIIVENGKSKVTAEHLLKLKKGEWAFDDFLVHGLV 649

Query: 635 AYPGI---------------------TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            Y  +                     TTH E+     L  +A LIP P  NQSPRN YQC
Sbjct: 650 EYLDVNEENDSLIALYEENINENSVPTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC 709

Query: 674 QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
            MGKQ +G    N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+
Sbjct: 710 AMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYS 769

Query: 734 GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG 793
           GYD+EDA++LNK+S +RGF    + +   I+L+   N+  T+ + SG+        IF  
Sbjct: 770 GYDIEDALVLNKASIDRGFGRCQVVRKNTIQLKRYPNH--TKDILSGMRVDEHGNPIF-- 825

Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
                                            LGPDGL  VGA++ E   +Y+      
Sbjct: 826 -----------------------------PHQALGPDGLGEVGARI-ENGQIYANKFVPT 855

Query: 854 NRYVTCRYSGKEEMCVEVVRMSSGFTEGG----------SVTPN---CAYIGYRIQRNPT 900
           N   +      E   VE  R +  + +G           SV+ N      +  R  R P 
Sbjct: 856 NAGESALGGASEPTNVESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPE 915

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +GDKF+SR GQKG+C +    EDLPF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 916 LGDKFSSRHGQKGVCGIIVQQEDLPFNDMGISPDIIMNPHGFPSRMTVG 964



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 998  ILVDKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1057

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1058 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1100

Query: 883  SVTPNCAYIGY 893
             +   C  +GY
Sbjct: 1101 DICNKCGLMGY 1111


>gi|357610728|gb|EHJ67119.1| hypothetical protein KGM_22531 [Danaus plexippus]
          Length = 1085

 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 230/890 (25%), Positives = 368/890 (41%), Gaps = 136/890 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE--VGRVPIMLKSKRCHLRNLTPAQLI 188
           P E R     YS P  V + +   G     F  +  +GR+P+ML+S  C L N +  +L 
Sbjct: 71  PHECRLRDMTYSAPITVDIEY-IRGNQRVIFKNKQLIGRMPLMLRSSNCVLTNKSDFELA 129

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI------AIK------RNAWKNRGLLF 236
           +  E P + GGYFI+ G EK++ +     RN  I      AI+       +  K R ++ 
Sbjct: 130 QLNECPHDPGGYFIIRGQEKVILIQEQLSRNRMIVDEFKGAIQCQVTSSTHEKKTRTIVI 189

Query: 237 SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSL-----------H 285
              G Y+       +A ++ +       A  + S ++ M L+G   ++           H
Sbjct: 190 VKNGKYVLR----HNALSDDIPICVVFKAMGICSDQEIMQLVGTDDAIAKKMAPCIMDCH 245

Query: 286 EEGIHTQHDSKVFFGQIFKEKL--QYDLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
              + TQ+ +  + G   K K       +    V+    ++   IL H+     +++ K 
Sbjct: 246 NLKVFTQNQALAYIGSKLKVKRFQSATSKFRTPVDEARDLIATTILAHVVVENYNFYVKA 305

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYA 399
           + L+ M  ++         +D  D    + +   GSL   + +             D++ 
Sbjct: 306 IYLAIMVKRVIEAETNKAAIDDPDYYGNKRLELAGSLLALMFE-------------DLFK 352

Query: 400 AF--RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR- 456
            F     SI   +   +               M+  G   + + ++R+ Y+S    + R 
Sbjct: 353 RFNWELKSIADKIIPRVKAAPFDGNWTIKRFKMERHG---VTQVLSRLSYISALGMMTRV 409

Query: 457 GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSK 509
            S F++ R  S PR L+   WG +CP  TP+G  CGL      + H+TT C         
Sbjct: 410 NSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTECSEGPISRLA 469

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
             A +  V +  G        + I   AL MV L+G I+G   +     L+   RM +  
Sbjct: 470 CNAGVEDVRLLGG--------EEINHPALYMVFLNGNILGVTREY--KKLIKIFRMFRRR 519

Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------------- 609
           G  +  +   +Y    ++       +Y+ +  GR+ RP +                    
Sbjct: 520 G--LISAFVSIYPNHNQRT------VYICSDGGRLCRPYIIVEKGLPLVQQHHINELNRG 571

Query: 610 -------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPD 662
                  L  G IE++   E+    I     E  P +TTH E+     L   A L+P P 
Sbjct: 572 IRKFQDFLNDGLIEYLDVNEENDSHIATVETEIDPYVTTHLEIEPFTILGVCAGLVPYPH 631

Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
            NQSPRN YQC MGKQ MGT   N + +    +Y L  P  P  +    +  + D  P G
Sbjct: 632 HNQSPRNTYQCAMGKQAMGTIGYNQKNRIDTLMYNLVYPQCPMVKTRTIELTNFDKLPAG 691

Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
            NA VAV+SY+GYD+EDA+ILN++S +RG+    ++KS    ++   N      +    D
Sbjct: 692 QNATVAVMSYSGYDIEDALILNRASIDRGYGRCLVYKSAKTIMKRYSNQTSDRILGPSRD 751

Query: 783 ---GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
              G +++A              MV ++             + L +K  P   +     +
Sbjct: 752 ANTGKVIKAHEVLDSDGIAAPGEMVENR-------------QVLINKQMPPATL---NPI 795

Query: 840 NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
           N+  P    +K+     V   Y G  E  +E V +SS   +   +      I  R  R P
Sbjct: 796 NQGQPQQIDYKD-----VPITYKGPVESYIEKVMVSSNSEDAFLIK-----ILLRQTRIP 845

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +GDKF+SR GQKG+  +    ED+PF D G+ PD++ NPHGFPSRMT+G
Sbjct: 846 EIGDKFSSRHGQKGVTGLIVQQEDMPFNDRGICPDMIMNPHGFPSRMTVG 895



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 755  GCIFKSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
            G   + +  ELE  GYNY+G +  YSG+ G  ++A I+ G V+YQ+L+HMV DK   +  
Sbjct: 920  GSKVRDVCQELEKHGYNYHGKDIFYSGITGEPLEAYIYSGPVYYQKLKHMVQDKMHARAR 979

Query: 814  FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
              R    +   +    DG + +G    ERD +  Y
Sbjct: 980  GPRAVLTRQPTEGRSRDGGLRLGEM--ERDCLIGY 1012


>gi|237833217|ref|XP_002365906.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            ME49]
 gi|211963570|gb|EEA98765.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            ME49]
          Length = 1332

 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 267/1028 (25%), Positives = 418/1028 (40%), Gaps = 215/1028 (20%)

Query: 72   HIASFDFMLDEGLD---------LAVEDIAP---IEFEIYGKTLKLNIVKAAISEPKVPA 119
            HI S++F +D  L          L   D+ P   IEF        LNI   ++  P+   
Sbjct: 180  HIESYNFFVDTELQNILRAPSNRLVKSDVDPSFFIEF--------LNI---SVGTPRYEE 228

Query: 120  GPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHL 179
            G +     +  P   R     Y+ P  V   +S   +       E+G +P+ML+S+ C L
Sbjct: 229  GMI---LQRLTPRICRTREITYAAPVFVDAEYSKGDEIIRRKHVEIGSIPVMLRSRVCVL 285

Query: 180  RNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAI------ 224
                P  L   GE P + GGYFIV G EK++         R+++     H +        
Sbjct: 286  HGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVETDMKHNVCATVTSAT 345

Query: 225  ----KRNA--WKNRGL------LFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
                 R A   KN  L         DL   I            ++  +  G A    +  
Sbjct: 346  AESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQMIGAGGALADVTGN 405

Query: 273  KSMCLLGM-MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL------------------RH 313
             +   + + +Q  H E + TQ  + ++ G   + K+Q                     R 
Sbjct: 406  TAQEAVSLSLQDCHTENVLTQQQALLWVGSRIRPKMQAKGFFTPVARGALLSERGGAGRS 465

Query: 314  LNEV--EICDYMLTNCILPHLD----DYWDK--FLCLSHMTCKLFHVVQGMVQLDSEDSI 365
               V  E  D +L   +L H++    D+  K  FLCL  M  ++         +D +D  
Sbjct: 466  AKSVVDEAVD-VLHRVVLSHIETTGSDFRAKTRFLCL--MIRRVLDAASDPSLMDDKDYY 522

Query: 366  MLQEIMTGGSLYLQLLKKE--KSGTSAVLKESDIYAAFR--------------------- 402
              + +   G L L LL ++  K   + V K++D YA  R                     
Sbjct: 523  GNKRLELAGQL-LSLLFEDLFKRFCTHVKKQAD-YALSRYHQARGGAGGLGSRKDEVPYP 580

Query: 403  -------ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
                      I   M   L+TGN +  +      M+ SG   +++ ++R+ Y++    + 
Sbjct: 581  DCFRNLPTDIITRGMQTALSTGNWTIKRFR----MERSG---VSQVLSRLSYIATLGMMT 633

Query: 456  R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
            R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     ++         +
Sbjct: 634  RINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTT-------DE 686

Query: 514  IPSVLVSLGMLPLTPVIQSIPEQAL------MVMLDGRIVGYILDQIATSLVPKLRMLKI 567
             P+ + SL          +I  + L      +VML+G ++G  + +    L+  +R+L+ 
Sbjct: 687  DPTPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLG--VHRRPRQLMKNIRLLRR 744

Query: 568  VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN------------- 614
             GE      E V +   E     +  +Y+ +  GR+ RP++ + +G              
Sbjct: 745  HGE----VGEFVSVHVNEA----HKTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLEN 796

Query: 615  -------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                         +EWI   E+  + I +  +E     TTH E+     L  +A LI  P
Sbjct: 797  GEMCFMDLLRSSILEWIDVNEENNLLIALR-EEDITAETTHLEIDPLTLLGVVAGLIAFP 855

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
            + NQSPRN YQC MGKQ MG    N   +    LY L  P  P  +    D +  +  P 
Sbjct: 856  NHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPA 915

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
            G NA VA++S++GYD+EDA++LN+ + +RGF      +   +EL+  +N     T    V
Sbjct: 916  GQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPV 975

Query: 782  D-----GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
                  GS   A        +   R  VS +++            ALED    DG+V VG
Sbjct: 976  AQASGPGSGKAASGLHRKSFFPGGRGAVSRRFE------------ALED----DGVVRVG 1019

Query: 837  AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN------CA- 889
             +L E D +Y +     N     R    + + ++    +  F    +V P+      C  
Sbjct: 1020 -ELLEEDQVYVHKFSPTN----TREHVSDPLQLDNSLYAPSFARYKTVVPSYVERVVCTD 1074

Query: 890  --------YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                     +  R  R P +GDKF+SR GQKG+  +  PAEDLPF +SG  PD++ NPHG
Sbjct: 1075 NSDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHG 1134

Query: 942  FPSRMTIG 949
            FPSRMT+G
Sbjct: 1135 FPSRMTVG 1142



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 24/160 (15%)

Query: 741  MILNKSSYERGFA-HGCIFKSMFIEL------ESGYNYYGTETMYSGVDGSMMQAQIFFG 793
            +I  KS+ + G   +G  F  + +E         G++Y G E + SG+ G  +Q  +F G
Sbjct: 1147 LIAGKSALQVGACQYGTAFGGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAG 1206

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
             ++YQ+L+HMV DK   +    R    +   +    +G + +G    ERD + +Y     
Sbjct: 1207 PIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEGRAKEGGLRLGEM--ERDCLVAY----- 1259

Query: 854  NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                     G   + +E + +SS   E  SV   C  +GY
Sbjct: 1260 ---------GSSALLMERLMLSSDVFE-ASVCSTCGLMGY 1289


>gi|401408519|ref|XP_003883708.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
 gi|325118125|emb|CBZ53676.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
          Length = 1366

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 262/1027 (25%), Positives = 416/1027 (40%), Gaps = 206/1027 (20%)

Query: 72   HIASFDFMLDEGLD---------LAVEDIAP---IEFEIYGKTLKLNIVKAAISEPKVPA 119
            HI S++F +   L          L   DI P   IEF        LNI   ++  P+   
Sbjct: 207  HIESYNFFVTTELQNILRAPSNRLVKSDIDPSFFIEF--------LNI---SVGTPRYEE 255

Query: 120  GPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHL 179
            G +     +  P   R     Y+ P  V   +S   +       E+G +P+ML+S+ C L
Sbjct: 256  GMI---LQRLTPRICRTREITYAAPVFVDAEYSKGDEIIRRKNVEIGSIPVMLRSQVCVL 312

Query: 180  RNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAI------ 224
                PA + + GE P + GGYFIV G EK++         R+++     H +        
Sbjct: 313  HGKDPAAIQKLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVETDMKHNVCATVTSAT 372

Query: 225  ----KRNA--WKNRGL------LFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
                 R A   KN  L         DL   I            ++  +  G++    +  
Sbjct: 373  AESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQMIGAGASLSDVTGN 432

Query: 273  KSMCLLGM-MQSLHEEGIHTQHDSKVFFGQIFKEKLQYD-------------------LR 312
             +   + + +Q  H E + TQ+ + ++ G   + K+Q                      R
Sbjct: 433  TAQEAVSLSLQDCHTENVLTQYQALLWVGSRIRPKMQAKGFFTPVSRGPLLSERSGGGSR 492

Query: 313  HLNEV--EICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQ----LDSEDSIM 366
                V  E  D +L   +L H++   + F   S   C +   V         +D +D   
Sbjct: 493  SAKSVIDEAVD-VLHRVVLSHIETTGNDFRAKSRFLCLMIRRVLDAANDPSLMDDKDYYG 551

Query: 367  LQEIMTGGSLYLQLLKKE--KSGTSAVLKESDIYAAFR---------------------- 402
             + +   G L L LL ++  K   + V K++D YA  R                      
Sbjct: 552  NKRLELAGQL-LSLLFEDLFKRFCTHVKKQAD-YALSRYHQARGGAAGGGSRLKDEVPYP 609

Query: 403  -------ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
                      I   M   L+TGN +  +      M+ SG   +++ ++R+ Y++    + 
Sbjct: 610  DCFRNLPTDIITRGMQTALSTGNWTIKRFR----MERSG---VSQVLSRLSYIATLGMMT 662

Query: 456  R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
            R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     ++         +
Sbjct: 663  RINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTT-------DE 715

Query: 514  IPSVLVSLGMLPLTPVIQSIPEQAL------MVMLDGRIVGYILDQIATSLVPKLRMLKI 567
             P+ + SL          +I  + L      +VML+G ++G  + +    L+  +R+L+ 
Sbjct: 716  DPTPIASLAFCLGVEDADAISGEELHDRGTYLVMLNGSLLG--VHRRPRQLMKNIRLLRR 773

Query: 568  VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN------------- 614
             GE      E V +   E     +  +Y+ +  GR+ RP++ +  G              
Sbjct: 774  HGE----VGEFVSVHVNEA----HKTVYIASDGGRLCRPLIVVDRGRPRLLPEHMAQLEN 825

Query: 615  -------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                         +EWI   E+  + I +  +E     +TH E+     L  +A LI  P
Sbjct: 826  GEMCFMDLLRSSILEWIDVNEENNLLIALR-EEDITAESTHLEIDPLTLLGVVAGLIAFP 884

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
            + NQSPRN YQC MGKQ MG    N   +    LY L  P  P  +    D +  +  P 
Sbjct: 885  NHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPA 944

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET----M 777
            G NA VA++S++GYD+EDA++LN+ + +RGF      +   +EL+  +N     T    +
Sbjct: 945  GQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSVDRTFPPPV 1004

Query: 778  YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA 837
              G       A +  G    +    M S K      F      +ALED    DG+V VG 
Sbjct: 1005 AQGPGQRSRSAALAPGGFPRKVSPAMASGKGAVSRRF------EALED----DGVVRVG- 1053

Query: 838  KLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN------CA-- 889
            +L E D +Y +     N     R    + + ++    +  F    +V P+      C   
Sbjct: 1054 ELLEEDQVYVHKFSPTN----TREHVSDPLQLDNAFYAPSFARYKTVVPSYVERVICTDN 1109

Query: 890  -------YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
                    +  R  R P +GDKF+SR GQKG+  +  PAEDLPF +SG  PD++ NPHGF
Sbjct: 1110 SDGCRTYKVIMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGF 1169

Query: 943  PSRMTIG 949
            PSRMT+G
Sbjct: 1170 PSRMTVG 1176



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 19/145 (13%)

Query: 751  GFAHGCIFKSMFIEL--ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
            G A G +      E+    G++Y G E + SG+ G  +Q  +F G ++YQ+L+HMV DK 
Sbjct: 1196 GTAFGGVSVDTLAEILASHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKI 1255

Query: 809  QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC 868
              +    R    +   +    +G + +G    ERD + +Y              G   + 
Sbjct: 1256 HARGRGPRQLLTRQPTEGRAKEGGLRLGEM--ERDCLVAY--------------GSSALL 1299

Query: 869  VEVVRMSSGFTEGGSVTPNCAYIGY 893
            +E + +SS   E   V   C  +GY
Sbjct: 1300 MERLMLSSDVFE-ACVCATCGLMGY 1323


>gi|221508871|gb|EEE34440.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1324

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 267/1028 (25%), Positives = 418/1028 (40%), Gaps = 215/1028 (20%)

Query: 72   HIASFDFMLDEGLD---------LAVEDIAP---IEFEIYGKTLKLNIVKAAISEPKVPA 119
            HI S++F +D  L          L   D+ P   IEF        LNI   ++  P+   
Sbjct: 172  HIESYNFFVDTELQNILRAPSNRLVKSDVDPSFFIEF--------LNI---SVGTPRYEE 220

Query: 120  GPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHL 179
            G +     +  P   R     Y+ P  V   +S   +       E+G +P+ML+S+ C L
Sbjct: 221  GMI---LQRLTPRICRTREITYAAPVFVDAEYSKGDEIIRRKHVEIGSIPVMLRSRVCVL 277

Query: 180  RNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAI------ 224
                P  L   GE P + GGYFIV G EK++         R+++     H +        
Sbjct: 278  HGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVETDMKHNVCATVTSAT 337

Query: 225  ----KRNA--WKNRGL------LFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
                 R A   KN  L         DL   I            ++  +  G A    +  
Sbjct: 338  AESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQMIGAGGALADVTGN 397

Query: 273  KSMCLLGM-MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL------------------RH 313
             +   + + +Q  H E + TQ  + ++ G   + K+Q                     R 
Sbjct: 398  TAQEAVSLSLQDCHTENVLTQQQALLWVGSRIRPKMQAKGFFTPVARGALLSERGGAGRS 457

Query: 314  LNEV--EICDYMLTNCILPHLD----DYWDK--FLCLSHMTCKLFHVVQGMVQLDSEDSI 365
               V  E  D +L   +L H++    D+  K  FLCL  M  ++         +D +D  
Sbjct: 458  AKSVVDEAVD-VLHRVVLSHIETTGSDFRAKTRFLCL--MIRRVLDAASDPSLMDDKDYY 514

Query: 366  MLQEIMTGGSLYLQLLKKE--KSGTSAVLKESDIYAAFR--------------------- 402
              + +   G L L LL ++  K   + V K++D YA  R                     
Sbjct: 515  GNKRLELAGQL-LSLLFEDLFKRFCTHVKKQAD-YALSRYHQARGGAGGLGSRKDEVPYP 572

Query: 403  -------ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
                      I   M   L+TGN +  +      M+ SG   +++ ++R+ Y++    + 
Sbjct: 573  DCFRNLPTDIITRGMQTALSTGNWTIKRFR----MERSG---VSQVLSRLSYIATLGMMT 625

Query: 456  R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
            R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     ++         +
Sbjct: 626  RINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTT-------DE 678

Query: 514  IPSVLVSLGMLPLTPVIQSIPEQAL------MVMLDGRIVGYILDQIATSLVPKLRMLKI 567
             P+ + SL          +I  + L      +VML+G ++G  + +    L+  +R+L+ 
Sbjct: 679  DPTPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLG--VHRRPRQLMKNIRLLRR 736

Query: 568  VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN------------- 614
             GE      E V +   E     +  +Y+ +  GR+ RP++ + +G              
Sbjct: 737  HGE----VGEFVSVHVNEA----HKTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLEN 788

Query: 615  -------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                         +EWI   E+  + I +  +E     TTH E+     L  +A LI  P
Sbjct: 789  GEMCFMDLLRSSILEWIDVNEENNLLIALR-EEDITAETTHLEIDPLTLLGVVAGLIAFP 847

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
            + NQSPRN YQC MGKQ MG    N   +    LY L  P  P  +    D +  +  P 
Sbjct: 848  NHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPA 907

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
            G NA VA++S++GYD+EDA++LN+ + +RGF      +   +EL+  +N     T    V
Sbjct: 908  GQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPV 967

Query: 782  D-----GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
                  GS   A        +   R  VS +++            ALED    DG+V VG
Sbjct: 968  AQASGPGSGKAASGLHRKSFFPGGRGAVSRRFE------------ALED----DGVVRVG 1011

Query: 837  AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN------CA- 889
             +L E D +Y +     N     R    + + ++    +  F    +V P+      C  
Sbjct: 1012 -ELLEEDQVYVHKFSPTN----TREHVSDPLQLDNSLYAPSFARYKTVVPSYVERVVCTD 1066

Query: 890  --------YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                     +  R  R P +GDKF+SR GQKG+  +  PAEDLPF +SG  PD++ NPHG
Sbjct: 1067 NSDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHG 1126

Query: 942  FPSRMTIG 949
            FPSRMT+G
Sbjct: 1127 FPSRMTVG 1134



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 24/160 (15%)

Query: 741  MILNKSSYERGFA-HGCIFKSMFIEL------ESGYNYYGTETMYSGVDGSMMQAQIFFG 793
            +I  KS+ + G   +G  F  + +E         G++Y G E + SG+ G  +Q  +F G
Sbjct: 1139 LIAGKSALQVGACQYGTAFGGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAG 1198

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
             ++YQ+L+HMV DK   +    R    +   +    +G + +G    ERD + +Y     
Sbjct: 1199 PIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEGRAKEGGLRLGEM--ERDCLVAY----- 1251

Query: 854  NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                     G   + +E + +SS   E  SV   C  +GY
Sbjct: 1252 ---------GSSALLMERLMLSSDVFE-ASVCSTCGLMGY 1281


>gi|221488368|gb|EEE26582.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii
            GT1]
          Length = 1328

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 267/1028 (25%), Positives = 418/1028 (40%), Gaps = 215/1028 (20%)

Query: 72   HIASFDFMLDEGLD---------LAVEDIAP---IEFEIYGKTLKLNIVKAAISEPKVPA 119
            HI S++F +D  L          L   D+ P   IEF        LNI   ++  P+   
Sbjct: 176  HIESYNFFVDTELQNILRAPSNRLVKSDVDPSFFIEF--------LNI---SVGTPRYEE 224

Query: 120  GPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHL 179
            G +     +  P   R     Y+ P  V   +S   +       E+G +P+ML+S+ C L
Sbjct: 225  GMI---LQRLTPRICRTREITYAAPVFVDAEYSKGDEIIRRKHVEIGSIPVMLRSRVCVL 281

Query: 180  RNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAI------ 224
                P  L   GE P + GGYFIV G EK++         R+++     H +        
Sbjct: 282  HGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVETDMKHNVCATVTSAT 341

Query: 225  ----KRNA--WKNRGL------LFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
                 R A   KN  L         DL   I            ++  +  G A    +  
Sbjct: 342  AESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQMIGAGGALADVTGN 401

Query: 273  KSMCLLGM-MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL------------------RH 313
             +   + + +Q  H E + TQ  + ++ G   + K+Q                     R 
Sbjct: 402  TAQEAVSLSLQDCHTENVLTQQQALLWVGSRIRPKMQAKGFFTPVARGALLSERGGAGRS 461

Query: 314  LNEV--EICDYMLTNCILPHLD----DYWDK--FLCLSHMTCKLFHVVQGMVQLDSEDSI 365
               V  E  D +L   +L H++    D+  K  FLCL  M  ++         +D +D  
Sbjct: 462  AKSVVDEAVD-VLHRVVLSHIETTGSDFRAKTRFLCL--MIRRVLDAASDPSLMDDKDYY 518

Query: 366  MLQEIMTGGSLYLQLLKKE--KSGTSAVLKESDIYAAFR--------------------- 402
              + +   G L L LL ++  K   + V K++D YA  R                     
Sbjct: 519  GNKRLELAGQL-LSLLFEDLFKRFCTHVKKQAD-YALSRYHQARGGAGGLGSRKDEVPYP 576

Query: 403  -------ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
                      I   M   L+TGN +  +      M+ SG   +++ ++R+ Y++    + 
Sbjct: 577  DCFRNLPTDIITRGMQTALSTGNWTIKRFR----MERSG---VSQVLSRLSYIATLGMMT 629

Query: 456  R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
            R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     ++         +
Sbjct: 630  RINSQFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTT-------DE 682

Query: 514  IPSVLVSLGMLPLTPVIQSIPEQAL------MVMLDGRIVGYILDQIATSLVPKLRMLKI 567
             P+ + SL          +I  + L      +VML+G ++G  + +    L+  +R+L+ 
Sbjct: 683  DPTPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLG--VHRRPRQLMKNIRLLRR 740

Query: 568  VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN------------- 614
             GE      E V +   E     +  +Y+ +  GR+ RP++ + +G              
Sbjct: 741  HGE----VGEFVSVHVNEA----HKTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLEN 792

Query: 615  -------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                         +EWI   E+  + I +  +E     TTH E+     L  +A LI  P
Sbjct: 793  GEMCFMDLLRSSILEWIDVNEENNLLIALR-EEDITAETTHLEIDPLTLLGVVAGLIAFP 851

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
            + NQSPRN YQC MGKQ MG    N   +    LY L  P  P  +    D +  +  P 
Sbjct: 852  NHNQSPRNTYQCAMGKQAMGAIAYNQFNRCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPA 911

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
            G NA VA++S++GYD+EDA++LN+ + +RGF      +   +EL+  +N     T    V
Sbjct: 912  GQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPV 971

Query: 782  D-----GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
                  GS   A        +   R  VS +++            ALED    DG+V VG
Sbjct: 972  AQASGPGSGKAASGLHRKSFFPGGRGAVSRRFE------------ALED----DGVVRVG 1015

Query: 837  AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN------CA- 889
             +L E D +Y +     N     R    + + ++    +  F    +V P+      C  
Sbjct: 1016 -ELLEEDQVYVHKFSPTN----TREHVSDPLQLDNSLYAPSFARYKTVVPSYVERVVCTD 1070

Query: 890  --------YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                     +  R  R P +GDKF+SR GQKG+  +  PAEDLPF +SG  PD++ NPHG
Sbjct: 1071 NSDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHG 1130

Query: 942  FPSRMTIG 949
            FPSRMT+G
Sbjct: 1131 FPSRMTVG 1138



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 24/160 (15%)

Query: 741  MILNKSSYERGFA-HGCIFKSMFIEL------ESGYNYYGTETMYSGVDGSMMQAQIFFG 793
            +I  KS+ + G   +G  F  + +E         G++Y G E + SG+ G  +Q  +F G
Sbjct: 1143 LIAGKSALQVGACQYGTAFGGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAG 1202

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
             ++YQ+L+HMV DK   +    R    +   +    +G + +G    ERD + +Y     
Sbjct: 1203 PIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEGRAKEGGLRLGEM--ERDCLVAY----- 1255

Query: 854  NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                     G   + +E + +SS   E  SV   C  +GY
Sbjct: 1256 ---------GSSALLMERLMLSSDVFE-ASVCSTCGLMGY 1285


>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
 gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
          Length = 1126

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 254/970 (26%), Positives = 404/970 (41%), Gaps = 166/970 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SF+  L   L   +++   I  EI G  LK+ + K     P +     G    +  P
Sbjct: 25  HLDSFNDFLRNKLQQIIDEQGEIITEIPG--LKIKLGKIRYDRPGIRETDKGPP-KELTP 81

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    +   G      +G +PIMLKS      N+T  +LI+ G
Sbjct: 82  LEARLRNLTYAVPLYLTMIPIENNIEGEPIEVYIGDLPIMLKSIADPTSNMTYDELIKIG 141

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL-FSDLGVYIRSVKRDE 250
           E P + GGYFIV G EK+            I  + +   NR L+ +   G  I  V +  
Sbjct: 142 EDPKDPGGYFIVNGTEKV------------IVAQEDLATNRVLVDYGKSGSNITHVAKIT 189

Query: 251 SATNN-----VLHFVTNGSARFMFSHRK-SMCLLGMMQSL-------------------- 284
           SA        V+  + + S +  F+     +  + MM++L                    
Sbjct: 190 SAAAGYRVQVVIERLKDSSIQVSFATVPGKIPFVIMMRALGFTTDKDIVYAVSLDPEIQN 249

Query: 285 -------HEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----D 333
                      I T  D+  F G     ++    +  N ++  + ++    LPH+    +
Sbjct: 250 ELLPSLEQASSITTVEDALDFIGN----RIAIGQKRENRIQRAEQIIDKYFLPHIGTSPE 305

Query: 334 DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK---------- 383
           D   K   L+    KL  +  G  Q D +D    + +   G L+  L +           
Sbjct: 306 DRKKKGYYLAAAVNKLLELYLGRRQPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLV 365

Query: 384 ---EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
              EK+      +   + A  RA  I   + + LATGN   G+    QL+  + ++ M  
Sbjct: 366 YQLEKAKVRG--RRLSLTALVRADIITERVRHALATGNWVGGRTGVSQLLDRTNWLSM-- 421

Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
                  +SH R V   S  +   + E R L    WG +CP  TP+G   GL+ +L    
Sbjct: 422 -------LSHLRRVV-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLA 473

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM--------VMLDGRIVGYILD 552
           Q+S  I     + I  V+   G++    +I  +  +  +        V L+GR++GY  D
Sbjct: 474 QVSVGINE---SSIEKVIYEQGVISQEELIDRLSAEEDINKYLNWSKVYLNGRLLGYYPD 530

Query: 553 QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA 612
                L  K+R L+  G KI   + + ++            +++    GR+ RP++ +  
Sbjct: 531 --GKELAEKIRELRRSG-KISDEVNVAHIV-----TEYINEVHINCDGGRVRRPLIIVKD 582

Query: 613 G-------NIEWIGTFEQVFMDICITMK----------EAYPGIT--------THRELSK 647
           G       +IE +   E  F D+    K           AY  +         TH E+  
Sbjct: 583 GKPLVSEDDIEKLRKGEITFDDLVKQGKIEFLDAEEEENAYIALNPQDLTKDHTHLEIWP 642

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L   A++IP P+ NQSPRN YQ  M KQ +G    N++ +   + + L  P  P   
Sbjct: 643 PAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQKPLVG 702

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               D +  ++ P G NAI+AV+SYTGY+MEDA+I+NKSS ERG     +++S F  L  
Sbjct: 703 TKILDIIGYNDRPAGNNAILAVMSYTGYNMEDAIIMNKSSVERG-----MYRSTFFRL-- 755

Query: 768 GYNYYGTETMY--SGVDGSMMQAQI----FFGVVHYQRLRH--MVSDKWQTKDYFGRDPA 819
               Y TE +    G +  +M+ +     + G  +Y+ L    +VS + + K        
Sbjct: 756 ----YSTEELKYPGGQEDKIMKPEPGTKGYKGNEYYRLLEDNGIVSPEVEVK-------G 804

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
              L  K+ P   +    +  E  P  S    S    +  R+    EM +  + + +  +
Sbjct: 805 GDVLIGKVSPPRFL---QEFKELSPEQSKRDTS----IVTRHG---EMGIVDLVLVTESS 854

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           EG  +      +  R  R P +GDKFA+R GQKG+  +     D+P+T  G+VPDI+ NP
Sbjct: 855 EGNKLVK----VRVRDLRIPEIGDKFATRHGQKGVIGMLIDQADMPYTVKGVVPDIILNP 910

Query: 940 HGFPSRMTIG 949
           H  PSRMTIG
Sbjct: 911 HALPSRMTIG 920



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ESG    GTE +Y G  G  ++ +I FG+V+YQ+L HMV+DK   +
Sbjct: 958  ESGLLPDGTEVVYDGRTGQKLKGRILFGIVYYQKLHHMVADKMHAR 1003


>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
 gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
          Length = 1142

 Score =  234 bits (597), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 256/1001 (25%), Positives = 420/1001 (41%), Gaps = 178/1001 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVED----IAPIEFE 97
           K LTD       DK N    FL   G    H+ SF++ +D+ L   +E     ++ ++ E
Sbjct: 29  KKLTDA-IDTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDKDLKKIIEANQVILSDVDPE 87

Query: 98  IYGKTLKLNIVKAAI--SEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDG 155
            Y K + + I + +    E  VP            P E R     YS P  V + ++   
Sbjct: 88  FYLKYVDIRIGEKSTGSKEKLVP------------PHECRLRDMTYSAPIYVDIEYTRGR 135

Query: 156 KAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLIN 215
                   E+GR+PIML+S +C L       + +  E P + GGYFIV G EK++ L+  
Sbjct: 136 NIIMHKDVEIGRMPIMLRSNKCILNGADQKVMAKLNECPLDPGGYFIVNGTEKVI-LVQE 194

Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF-------- 267
               + I ++ +  K+          + R  K      N  ++   N  A          
Sbjct: 195 QLSKNRIIVEADEKKSIVQASVTSSTHERKSKTYVVTKNGKIYLKHNSIAEEVPIAIILK 254

Query: 268 ---MFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEKLQYDLR 312
              + S  + M L+    S +++             I TQ  +  + G   K   +  L 
Sbjct: 255 ACGIVSDLEIMQLVCGNDSSYQDIFAINLEEAVKLNISTQQQALEYIGSKVKTIRRQKLS 314

Query: 313 HLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIML 367
            L E +E     +   ++ HL     D+ +K L ++ MT ++   ++    +D  D +  
Sbjct: 315 ILQEGIE----AIATTVIAHLTVEALDFREKALYIAMMTRRVVMAIENPKMVDDRDYVGN 370

Query: 368 QEIMTGGSL----YLQLLKKE----KSGTSAVLKESDIYAAFRA--------SSIESAMT 411
           + +   G L    +  L KK     K+    VLK+ +    + A        ++I S + 
Sbjct: 371 KRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVHSNNITSGLN 430

Query: 412 NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPR 469
             ++TGN S  +      M+ +G   +   ++R+ Y+S    + R  S F++ R  S PR
Sbjct: 431 RAISTGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISSQFEKSRKVSGPR 483

Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPL 526
            L+   +G +C   TP+G  CGL+ +L     I+   E  P K L  +      LG+  +
Sbjct: 484 ALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEDPIKKLCYM------LGVEDI 537

Query: 527 TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEK 586
           T +  +       V L+G ++G    +   + V + R L+  G ++ + + I Y    ++
Sbjct: 538 TLIDSASLHLNYGVHLNGTLIGTT--RFPLNFVSQFRQLRRTG-RVSEFVSI-YTNSHQQ 593

Query: 587 GMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEWIGT 620
                  +++ T  GR+ RP++ ++ G                           +E++  
Sbjct: 594 A------VHIATDGGRICRPLIIVSNGKSHVKAEHLKELLEGKLDFDDFLKLGLVEYLDV 647

Query: 621 FEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
            E+    I +  K+     +TH E+     L  +A LIP P  NQSPRN YQC MGKQ +
Sbjct: 648 NEENDCFIALYEKD-LSNRSTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAI 706

Query: 681 GTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDA 740
           G    N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+GYD+EDA
Sbjct: 707 GAIGYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDA 766

Query: 741 MILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRL 800
           ++LNK+S +RGF      +     L+   N+  T+ +  G+                 R+
Sbjct: 767 LVLNKASIDRGFGRCETRRKTTTVLKRYPNH--TQDIIGGM-----------------RV 807

Query: 801 RHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE----------RDPMYSYWK 850
               +  WQ               + LGPDGL  VG K+N            +   S   
Sbjct: 808 DENNNPIWQ--------------HEALGPDGLGEVGVKVNSGQIYINKSVPTNASDSVLT 853

Query: 851 ESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASR 908
            ++++Y      Y       ++ V MS    +   +      +  R  R P +GDKF+SR
Sbjct: 854 STQSQYKETPVVYRSPVPSHIDQVMMSVSENDQALIK-----VLLRQNRRPELGDKFSSR 908

Query: 909 AGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            GQKG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 909 HGQKGVCGIIVNHEDMPFNDEGISPDIIMNPHGFPSRMTVG 949



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E+GYNY G + +YSGV G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 983  ILVENGYNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1042

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1043 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1085

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1086 DVCHKCGLMGY 1096


>gi|347522774|ref|YP_004780344.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
 gi|343459656|gb|AEM38092.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
          Length = 1168

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 254/996 (25%), Positives = 395/996 (39%), Gaps = 171/996 (17%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPV----- 122
           L   HI S++  L+  L   ++  + I+    G   KL IV   I       GP      
Sbjct: 27  LTKQHIDSYNRFLERDLLEIIKSYSVIDV---GGQYKLEIVLDGIKSGLELLGPPMVREG 83

Query: 123 -GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSK-----R 176
            G       P E R     Y  P  V V    +G         +G +PIML+SK     R
Sbjct: 84  DGSERTDVTPLECRIRDLTYEAPIRVRVRL-IEGVVVDEQEVVLGMLPIMLRSKADPLAR 142

Query: 177 CHLRNLTPAQ----LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
           C        +    LI++GE P + GGYFI+ G E++V +      N  +  K    +  
Sbjct: 143 CFYERGNVKECYELLIQKGEDPRDPGGYFIINGSERVVVIQEEQVVNRVLVDK--GRQQT 200

Query: 233 GLLFSDLGVYIRSVKRDE----SATNNVLHF-VTNGSARFMFS--------HRKSMCLLG 279
           G+ F+   +   +  R +       +  LH  +T    +  F          R    +L 
Sbjct: 201 GVKFTAKVISFHAGLRYQLILDMHKDGTLHVSMTRAITKIPFVILLRALGLERDRDIVLA 260

Query: 280 M-----MQSL------HEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI 328
           +     +Q++          I TQ ++  F G  F+E +         + + ++ L N +
Sbjct: 261 ISTDPEIQNMLYPSLEQARAIATQKEALEFIGARFREGIGKPSEQ--RIRVAEHALDNFL 318

Query: 329 LPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---------- 374
           LPHL    +D   K L L+ M  KL  +  G  Q D +D    + ++  G          
Sbjct: 319 LPHLGTRPEDRLRKALFLADMARKLLELAAGRRQPDDKDHYANKRLLLAGDLIAIVFRTA 378

Query: 375 --SLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
             SLY Q ++ +     A  K        R   I + + + LATGN    +    QL+  
Sbjct: 379 MRSLY-QDIRSQLERAKARGKRISPRTVIRRDIITNKLHDALATGNWPGQRTGVSQLLDR 437

Query: 433 SGFVIMAENINRM-----RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
           + ++ M  ++ R+     R   HF               E R L    WG ICP  TP+G
Sbjct: 438 TNWLSMLSHLRRVVSPLSRSQPHF---------------EARDLHGTHWGRICPFETPEG 482

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQI--------------PSVLVSLGMLPLTPVIQSI 533
             CGL+ +L     IS  +  K + ++                ++ +  +    P    +
Sbjct: 483 PNCGLVKNLALMAYISAGVDEKEVEKVIRENFEIIDAEELLRKLIETEDVSEFLPYYMEV 542

Query: 534 PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG 593
             +   V ++GR++GY  D     L  ++R L+  G K+   + + Y +   +       
Sbjct: 543 TSKYTRVYINGRLIGYYPD--GEKLAQEIRRLRREG-KLHYEVNVAYYRDVNE------- 592

Query: 594 LYLFTGPGRMLRPV-------MNLAAGNIEWIGTFEQVFMDI----------CITMKEAY 636
           LY+ T PGR+LRP+       + L   +IE I   E  F D+              + AY
Sbjct: 593 LYVNTDPGRVLRPLFVVENGKLKLKPEHIEKIKKGEWKFTDLLKHGIVELLDAEEEENAY 652

Query: 637 PGIT--------THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
             +         TH E+         A+ IP  + NQSPRN YQ  M KQ +G    N++
Sbjct: 653 VALNPEDITPEHTHMEIWTPAIFGVTASTIPYAEHNQSPRNTYQAAMAKQALGLYAANFQ 712

Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
            +   + + L  P  P  +    D +  +N P G N +VAV+S+TGY++EDA+I+NKSS 
Sbjct: 713 IRADTRGHLLHYPEKPLVQTRALDIIGFNNRPAGQNMVVAVLSFTGYNIEDAIIMNKSSI 772

Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
           +RG A    F+           Y   E  YSG    ++      G +   + R    D  
Sbjct: 773 DRGLARSTFFRL----------YATEERKYSGGQKDLL------GCIDDPQRRPGCIDIK 816

Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD--------PMYSYWKESENRYVTCR 860
              D   + P       KL  DG+V    ++   +        P +S     E R +   
Sbjct: 817 SIID--AKPPIAYR---KLDIDGIVSPEVEVESGEVLIGKTAPPKFS----EEFREIAVS 867

Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTP-----NCAYIGYRIQRNPTVGDKFASRAGQKGIC 915
              + +  V V     G  +   +T          +  R  R P  GDKFASR GQKG+ 
Sbjct: 868 TERRRDESVSVRHGERGTVDTVFITETNEGFKLVKVRVRDLRIPEFGDKFASRHGQKGVI 927

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
               P  D+PFT+ G+ PD++ NPH FPSRMT+G L
Sbjct: 928 GFLVPQYDMPFTEDGITPDLIINPHAFPSRMTLGQL 963



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 32/47 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ G++  GTE MY G  G M++  +F G+V+YQ+L HMV+DK   +
Sbjct: 997  LKYGFSPDGTEIMYDGRTGEMLRHPVFIGIVYYQKLHHMVADKIHAR 1043


>gi|358378199|gb|EHK15881.1| hypothetical protein TRIVIDRAFT_206553 [Trichoderma virens Gv29-8]
          Length = 1157

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 251/952 (26%), Positives = 404/952 (42%), Gaps = 109/952 (11%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++F ++  +   V     I  ++      L+     +  P+           +  P
Sbjct: 48  HIDSYNFFVETEIKEIVRANRTIRSDV-DSNFWLDFTDIRVDRPRRLDYTDSKSRTEVTP 106

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     Y+ P  V +A+  D +        +GR+PIMLKS +C L     +Q+ +  
Sbjct: 107 MECRLRDMTYAAPIFVDIAYIRDKQKIVRKNVPLGRMPIMLKSCKCRLSGANNSQMEQMN 166

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPI--AIKRNAWKNRGLLFS----DLGVYIRS 245
           E P + GGYFIV G EK++ +     +N  I  A ++N   +  +  S        Y+  
Sbjct: 167 ECPLDPGGYFIVNGTEKVILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTL 226

Query: 246 VKRDESATNNVL----HFVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GI 289
            K   + T+N+L      V    A    S  + M L+      +++            GI
Sbjct: 227 KKDKITLTHNILVEGIPIVIILKALGGLSDYEIMQLVAGSDGRYQDEFLVNFDEAAKAGI 286

Query: 290 HTQHDSKVFFGQIFK---EKLQYDLR-HLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
            TQH +  + G   K    K Q+  +   N VE     L N I+ H+     D++ K + 
Sbjct: 287 FTQHQALEYIGSRVKMGSRKGQFGAQARRNNVEEGLDALANLIIAHVPIEGLDFYPKAIY 346

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLKKEKSGTSAVLK 393
           ++ MT ++    Q    +D  D +  + +   G         L+ + + + K      LK
Sbjct: 347 VAMMTRRVLMASQDPKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKFLK 406

Query: 394 ESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMS 449
           +++      A  + S   N +  G    + +G  S  +  M  +G   +   ++R+ Y+S
Sbjct: 407 KNNRAVPLDAVHMISNHANSIGLGINRAIQSGNWSVKRFNMNRAG---VTHVLSRLSYIS 463

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI- 506
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 464 ALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVD 523

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
            + V+  I ++ V +  +      +   E + ++ ++G    + L +       + R ++
Sbjct: 524 EAPVMRWIFTLDVGVEPIRNFSGAEMHREGSYIIHVNG--TPFALTRYPKRFTHRFRTMR 581

Query: 567 IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN-------------- 609
             G   P     V +         +  +++ T  GR+ RP   V N              
Sbjct: 582 RRGWISP----FVGIHTNSH----FNAIHIATDEGRICRPYIIVKNGKQKLKPEHLRLLQ 633

Query: 610 ---------LAAGNIEWIGTFEQVFMDICITMKEAYPGI-TTHRELSKTDFLSNLANLIP 659
                    L  G +E++   E+   D  IT+ E    + TTH E+     L  +A LIP
Sbjct: 634 MGKVTFDDFLTKGIVEYLDVNEE--NDALITIYEDQVTMSTTHLEIEPFTLLGAVAGLIP 691

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
            P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P         +  D  
Sbjct: 692 FPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKL 751

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+  Y     E +  
Sbjct: 752 PAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQK-YPNGRRERIGD 810

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
            ++      +I  GV+   + +H   D         R  + +A+  K  P  +   G  L
Sbjct: 811 PLN------EIDNGVMRRIK-KHEALDDDGLAIVGQRIHSGEAMVKKETPLDMTTTGIGL 863

Query: 840 NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
            +R P       SE R     Y   +   ++ V +S   TE  +       +  R  R P
Sbjct: 864 -DRGP-------SEYRDTAVSYRIADPAYIDKVMISQ--TEKDTT---VIKVQTRQTRRP 910

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            +GDKF+SR GQKG+  +    ED+PF DSGL PDI+ NPHGFPSRMT+G L
Sbjct: 911 ELGDKFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKL 962



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 25/152 (16%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E GF  G  F+S  +E      ++ G+++ G +   SG+ G  ++A IF G ++YQRL+H
Sbjct: 978  EYGF--GDAFRSHPVEQVSKVLVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKH 1035

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    R    +   +    DG + +G    ERD + +Y              
Sbjct: 1036 MVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY-------------- 1079

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            G  ++ +E + +SS       +   C   GYR
Sbjct: 1080 GASQLLLERLMLSSDGVM-IDICQQCGLFGYR 1110


>gi|346972359|gb|EGY15811.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium dahliae
           VdLs.17]
          Length = 1160

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 249/976 (25%), Positives = 392/976 (40%), Gaps = 155/976 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++F +D  +   V     I  ++   +  L      +  P           ++  P
Sbjct: 48  HIDSYNFFVDHEIKDIVRANRTIRSDV-NSSFWLEFTDIRVESPSRLDFNDARAHSEVTP 106

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     Y  P  V +A+  D          +GR+P+MLKS +C L   +  ++    
Sbjct: 107 MECRLRDMTYGAPIFVDIAYIRDKSKIVRRNVPLGRLPVMLKSAKCRLNGASNKEMALMN 166

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS-DLGVYIRSVKRDE 250
           E P + GGYFI+ G EK++  LI  + +    I     KN  +  S     + R  K + 
Sbjct: 167 ECPLDPGGYFIINGTEKVI--LIQEQLSKNRVIVEADEKNNIITASVTSSTHERKTKTNI 224

Query: 251 SATNNVLHFVTN-----GSARFMFSHRKSMCLLGMMQ------------------SLHEE 287
           +   + +  V N          +      +  L +MQ                     ++
Sbjct: 225 TLKKDRISLVHNVLVEPAPIVIVLKALGGLSDLEIMQLVAGDDGRYQDEFTVNFDEATKQ 284

Query: 288 GIHTQHDSKVFFGQIFK----EKLQYDLR-HLNEVEICDYMLTNCILPHLD----DYWDK 338
           G++TQ  +  + G   K     + Q + +   N +E     L+N I+ H+     D++ K
Sbjct: 285 GVYTQQQALEWIGSRVKMGGRGRFQPNSQARKNNIEEGMDALSNLIIAHIPVEGLDFYPK 344

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSA 390
            + ++ MT ++      M  +D  D +  + +   G L    +  L KK     K+    
Sbjct: 345 AIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQLLSLLFEDLFKKFCGDVKASIDK 404

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR------ 444
           VLK+ +   A  A ++ S   N     N+  G N  +Q      + +   N+NR      
Sbjct: 405 VLKKDNRAVAMDAVTMISNHAN-----NIGQGINRAIQ---TGNWTVKRFNMNRAGVTHV 456

Query: 445 ---MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------L 493
              + Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL      +
Sbjct: 457 LSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALM 516

Query: 494 NHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI--PEQALMVMLDGRIVGYIL 551
            H+TTN +  E +   V        V   + P+     S    E + ++ ++G    + L
Sbjct: 517 THITTNAE-EEPVKRWVFT------VDDNVEPIRNFSGSEMHREGSYIIHING--TPFAL 567

Query: 552 DQIATSLVPKLRMLK-------IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
            +       + R ++        VG  I      V++   E G    P + +  G  ++ 
Sbjct: 568 TKFPKRFTNRFRTMRRRGWISPFVGVHINNHFNAVHIATDE-GRICRPYIIVKNGKPKLK 626

Query: 605 RPVMNL------------AAGNIEWIGTFEQVFMDICITMKEA-YPGITTHRELSKTDFL 651
              + L              G +E++   E+   D  + + E      TTH E+     L
Sbjct: 627 AEHLKLLQLGKATFDDFLTNGVVEYLDVNEE--NDTLVALYETDVNQSTTHMEIEPFTIL 684

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
             +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P       
Sbjct: 685 GAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTI 744

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
             +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+   N 
Sbjct: 745 QLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYSAELQKYPNG 804

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
                                        R  + D  Q ++  G+     A    L PDG
Sbjct: 805 K----------------------------RERIGDP-QYEEMEGKPRRRIAKHAALDPDG 835

Query: 832 LVYVGAKLNERDPMYSYWKE----------------SENRYVTCRYSGKEEMCVEVVRMS 875
           L  VG ++   + M    KE                SE R  +  Y   +   ++ V +S
Sbjct: 836 LAMVGGQVRAGEAMVK--KETPLDTGSTGIGNDRGPSEFRDSSISYRIPDPAYIDKVMIS 893

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
               +   +      +  R  R P +GDKF+SR GQKG+  +    EDLPF+D GLVPDI
Sbjct: 894 QSEKDNMVIK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDI 948

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPHGFPSRMT+G L
Sbjct: 949 IMNPHGFPSRMTVGKL 964



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 17/130 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G+++ G +   SG+ G  ++A IF G ++YQRL+HMV DK  ++    R    +   
Sbjct: 1000 VDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPT 1059

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    +G + +G    ERD + +Y              G  ++ +E + +SS  TE   +
Sbjct: 1060 EGRSREGGLRLGEM--ERDCLIAY--------------GASQLLLERLMISSDGTE-IDI 1102

Query: 885  TPNCAYIGYR 894
               C   GY+
Sbjct: 1103 CQQCGLFGYK 1112


>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
 gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
          Length = 1202

 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 234/904 (25%), Positives = 397/904 (43%), Gaps = 139/904 (15%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L   +P ++ + 
Sbjct: 156  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPGEMYQL 215

Query: 191  GEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRG-LL 235
             E P + GGYFIV G EK++ +   L  NR      P        +    N  K++  ++
Sbjct: 216  HECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYII 275

Query: 236  FSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE-------- 287
                 +Y+R      +  ++ +  V    A  + S ++ + L+  + S+++E        
Sbjct: 276  LKKDRIYLR-----HNVLSDDVPIVIILKAMGIQSDKEMLLLVAGVDSVYQEDFAINFEE 330

Query: 288  ----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
                GI+TQ  +  + G   +I ++   +     N ++     + + I+ H+     ++ 
Sbjct: 331  SIKLGIYTQQQALEYLGSHIKIMRKPNSFGGVRRNYIQEAVEAIASVIISHVQVENMNFR 390

Query: 337  DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGT 388
             K L ++HM  ++         +D  D +  + +   G L    +  L KK     K   
Sbjct: 391  PKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNI 450

Query: 389  SAVLKESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINR 444
              VLK+     AF A S+ +   N +  G    +S G  S  +  M+ +G   +   ++R
Sbjct: 451  DKVLKKPVRTEAFDAFSVVAIHGNHITQGMNRAISTGNWSLKRFRMERAG---VTHVLSR 507

Query: 445  MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHL 496
            + Y+S    + R  S F++ R  S PR L+   +G +CP  TP+G  CGL      + H+
Sbjct: 508  LSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHI 567

Query: 497  TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQI 554
            TTN    E  P + L      + +LG   +  V   +   + A ++ L+G  +   L + 
Sbjct: 568  TTN---DEEEPVRKL------VYALGAEDVQAVGGREFYGQGAYIIFLNGSPIA--LTRR 616

Query: 555  ATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----- 609
                +   R L+ +G ++ + + I Y+   +  M      ++ T  GR+ RP++      
Sbjct: 617  PKFFLNSFRRLRRMG-RVSEFVSI-YINHHQSAM------HIATDDGRICRPLIIVEKQK 668

Query: 610  ---------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKT 648
                                 LA G +E++   E+    I +  +E     TTH E+   
Sbjct: 669  SRVTADHLSQLRSGEMEFDDFLAQGLVEYLDVNEENDSYISVYEREINEN-TTHLEIEPF 727

Query: 649  DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  + 
Sbjct: 728  TILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKT 787

Query: 709  VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
               + +  D  P G +A VAV+SY+GYD+EDA++LNK+S +RGF    +F+     L+S 
Sbjct: 788  RTIELVKYDRLPAGQSATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYSANLKSY 847

Query: 769  YNYYGTETMYSGVD---GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
             N  GT+    G D   G+ ++             +H + D         +  + +   +
Sbjct: 848  SN--GTKDRLLGPDRENGAPIR-------------KHALLDSDGLAAVGEKVSSGEVYIN 892

Query: 826  KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
            K+ P+  +  G   ++     +Y    +       Y   +   ++ V +S+  TEG +  
Sbjct: 893  KVTPENALSSGITGSDAGGPIAYIPSPQT------YKLPDPSYIDKVMIST--TEGEN-- 942

Query: 886  PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                 +  R  R P VGDKF+SR GQKG+  +     D+PFTD G+VPDI+ NPHGFPSR
Sbjct: 943  -QLLKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSR 1001

Query: 946  MTIG 949
            MT+G
Sbjct: 1002 MTVG 1005



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      +  G++Y G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1022 FGYGTPFGGSPVEEMSAILVSKGFSYGGKDYLTSGITGEPLPAYVFTGPIYYQKLKHMVQ 1081

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1082 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1125

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  NC ++GY
Sbjct: 1126 QLLLERLMISSDRHE-VDVCENCGFMGY 1152


>gi|393911066|gb|EJD76149.1| DNA-directed RNA polymerase [Loa loa]
          Length = 1136

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 252/993 (25%), Positives = 410/993 (41%), Gaps = 191/993 (19%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           HIAS+D+ +   +       D    D  P     Y K L + +         +P+   G 
Sbjct: 32  HIASYDYFVSTEIKKILRANDRITSDANP---SFYLKYLDIRV--------GMPSSEEGF 80

Query: 125 H--FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           +   +K  P E R     YS P +V + ++   +        +G++P+ML+S +C L+N+
Sbjct: 81  NQINDKISPHECRLRDMTYSAPISVDIEYTRGSQRVLRNGLVIGKMPVMLRSSKCVLKNM 140

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
             ++L    E P + GGYFI+ G EK+V L+      + I I RN+ K       +L   
Sbjct: 141 NESELAHVQECPYDPGGYFIIRGSEKVV-LIQEQLSKNRIMIGRNSKK-------ELQCE 192

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG-- 300
           I S  ++  +      ++ +   R+   H +    + +       G  + HD     G  
Sbjct: 193 ILSSTQERKSKT----YIASKKQRYYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAVGLE 248

Query: 301 -----------------QIFKEK--LQY-----DLRHL------------NEVEICDYML 324
                            QI  ++  LQY      +R               E E  D+ L
Sbjct: 249 EKFVAAMAPSIEECASHQIVTQEGALQYIASKVKMRKFGPFASGTSSTLPREHEAIDF-L 307

Query: 325 TNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL---- 376
           +N ++ H+     +   K + L  M  +L     G  + D  D    + +   GSL    
Sbjct: 308 SNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVGDTECDDRDFYGNKRLELAGSLLALL 367

Query: 377 YLQLLKKEKSGTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
           +  + K+  S    +   S         DI    R   I +A+ + LATGN +  +    
Sbjct: 368 FEDVFKRFNSELKRIADNSLGKTLAAPLDIVKHMRQDLITNALVDALATGNWTIKRFK-- 425

Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTP 485
             M+  G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP
Sbjct: 426 --MERQG---VTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTP 480

Query: 486 DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL--MVMLD 543
           +G  CGL+ +L     IS          +  +L + G+  +  +  S     +  +V L+
Sbjct: 481 EGESCGLVKNLAL---ISHITTDSDEEPVIRLLYNSGVEDVKSLHFSAIHSPVYHIVFLN 537

Query: 544 GRIVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGR 602
           G IVG  +D Q   S +  +R   ++ E +  S                  +Y+ +  GR
Sbjct: 538 GVIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTN-----------AAQRSVYIASDGGR 586

Query: 603 MLRPVMNLAAG-------NIEWIGTFEQVFMD-------------------ICITMKEAY 636
           + RP + +  G       +IE +    ++F D                   I +   +  
Sbjct: 587 LCRPYIIVKNGVPQVTQEHIEELKKGCRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIK 646

Query: 637 PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
           P  TTH E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y
Sbjct: 647 PN-TTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMY 705

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
            L  P  P  +    +  + +  P G NA++AV+SY+GYD+EDA++LNK+S +RG+    
Sbjct: 706 LLVYPQRPLVKTKTIEFCNFEKLPAGQNAVIAVMSYSGYDIEDALVLNKASLDRGYGRCL 765

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
           ++K      ++    Y  +T +  + G  ++A     +      +H V D+         
Sbjct: 766 VYK----HAKATARKYPNQT-FDRLMGPTVEATTRKPI-----YKHQVLDQ--------- 806

Query: 817 DPANKALEDKLGPDGLVYVGAKLNERDPMYS-----------YWKESENRYVTCRYSGKE 865
                        +G+VYVGA ++ +  M +               S N          E
Sbjct: 807 -------------EGIVYVGACIHSKQVMINKHMPVVSTEAGATTSSNNDGTNVSSHEVE 853

Query: 866 EMCVEVVRMS--SGFTEGGSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
              V VV  +    + E   +T N        +  R  R P +GDKF+SR GQKG+C + 
Sbjct: 854 YKDVSVVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCGLI 913

Query: 919 WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
              ED+PF D G+ PD++ NPHG+PSRMT+G L
Sbjct: 914 AQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKL 946



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G+NY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 983  GFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1042

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD + +Y
Sbjct: 1043 ARDGGLRLGEM--ERDCLIAY 1061


>gi|350638131|gb|EHA26487.1| hypothetical protein ASPNIDRAFT_171679 [Aspergillus niger ATCC 1015]
          Length = 1201

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 269/1030 (26%), Positives = 428/1030 (41%), Gaps = 218/1030 (21%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI S++++++  L   VE  + I  ++   
Sbjct: 66   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDV-DH 123

Query: 102  TLKLNIVKAAISEPKVPAGP----VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            T  +      +  P+    P        ++   P E R   + Y+ P  V   +    + 
Sbjct: 124  TFYIKFTNIYLGFPRRADEPQDARADFTYSTVSPQECRLRDTTYAAPIQVDFEYVRGRQR 183

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                   +GR+P+ML+S +C L N TPA++    E P + GGYFIV G EK+        
Sbjct: 184  VMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVNGTEKV-------- 235

Query: 218  RNHPIAIKRNAWKNRGLLFSD-------LGVYIRSVKRDESA-----------TNNVLH- 258
                I ++    KNR ++ +D         V   S +R   +            +NVL  
Sbjct: 236  ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSE 291

Query: 259  ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIF 303
                V    A  + + ++ + L+  +  +++E            GI+TQ  +  + G   
Sbjct: 292  DIPIVILLKAMGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQQQALDWIGARI 351

Query: 304  K----EKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQ 354
            K    +   Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++     
Sbjct: 352  KINRKQSPSYRRTHVQEAVE----AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKN 407

Query: 355  GMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSI 406
                +D  D +  + +   G L    +  L KK     K     VL + +   AF A S+
Sbjct: 408  DASLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSV 467

Query: 407  ESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
             +  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F+
Sbjct: 468  ITMHSNHITQGMNRAISTGNWSLKRFRMERAG---VTHVLSRLSYIAALGMMTRISSQFE 524

Query: 462  EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI 514
            + R  S PR L+   +G +CP  TP+G  CGL      + H+TTN    E  P      +
Sbjct: 525  KTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTN---DEEGP------V 575

Query: 515  PSVLVSLGMLPLTPVIQSIPEQAL------MVMLDG------RIVGYILDQIATSLVPKL 562
             +++  LG       IQ++  + L       + ++G      R   Y LD        +L
Sbjct: 576  RNLIFMLG----AEDIQTVGGKELYGPGCYTISINGTPTALTRRPKYFLDAFR-----RL 626

Query: 563  RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------- 609
            R +  + E +      +Y+   ++       +++ T  GR+ RP++              
Sbjct: 627  RRMGRISEFVS-----IYINHHQRA------VHVATDDGRICRPLIVVENGKSRVNAQHL 675

Query: 610  -------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
                         LA G +E++   E+    I I  K+     TTH E+     L  +A 
Sbjct: 676  EKLRNGTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITE-TTTHLEIEPFTVLGAVAG 734

Query: 657  LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
            LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    +    
Sbjct: 735  LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKY 794

Query: 717  DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            D  P G NAIVAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S  N  GT+ 
Sbjct: 795  DQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSN--GTK- 851

Query: 777  MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYV 835
                                         D+     Y    P  K AL   L  DGL  V
Sbjct: 852  -----------------------------DRLSGPTYENDAPIRKHAL---LESDGLAAV 879

Query: 836  GAKLNERD----------PMYSYWKESE-NRYVT-----CRYSGKEEMCVEVVRMSSGFT 879
            G ++N  +           M S +  S+  R V+       Y   +   ++ V +S    
Sbjct: 880  GEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVMVSVTEN 939

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            E   V      +  R  R P VGDKF+SR GQKG+  +     D+PFTD+G+ PDI+ NP
Sbjct: 940  ENQLVK-----VLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNP 994

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 995  HGFPSRMTVG 1004



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1038 ILIDNGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1097

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1098 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1140

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1141 DVCEQCGFMGY 1151


>gi|332017159|gb|EGI57958.1| DNA-directed RNA polymerase III subunit RPC2 [Acromyrmex
           echinatior]
          Length = 1113

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 242/972 (24%), Positives = 411/972 (42%), Gaps = 159/972 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+++ ++E +   V+    ++ +       L  +   +  P+V      I      P
Sbjct: 19  HIDSYNYFINEEIKNIVKANEKVQSD-EDPHFYLKYLNIKVGLPEVQESSNSIRTIPTTP 77

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     YS    V V +    +        +G++PIML+S  C L   + ++L +  
Sbjct: 78  HECRLRDLNYSASIIVDVEYIRSNQRIIRHNMVIGKMPIMLRSSNCVLTKKSESELAKMN 137

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSVK 247
           E   + GGYFI+ G EK+            I I+    +NR +L  D    +     S  
Sbjct: 138 ECLYDSGGYFIINGQEKV------------ILIQEQMVRNRIILEEDSKNCIVAACNSFT 185

Query: 248 RDESATNNVL-----HFVTNG------------SARFMFSHRKSMCLLGM---------- 280
            D+    NV+     +++ +              A  + S  + M ++G           
Sbjct: 186 HDKKTKTNVVGKTGKYYIRHNMFQDDILITIIFKAMGIVSDLEIMQMVGTQETYLNKFAA 245

Query: 281 -MQSLHEEGIHTQHDSKVFFGQIFKE-KLQYDLRHLNEVEICDYMLTNCI--LPHLD-DY 335
            ++   E GI +Q+ +  +     K+ +      H+ + E+ D + TN +  +P +D ++
Sbjct: 246 SLEDCQELGIFSQNQALKYLNNKRKQMRFHVPKSHVTD-EMKDVLATNILSHVPVVDFNF 304

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-----EKS 386
             K L L+ M  ++ +       +D +D    + +   GSL    +  L K+     +K 
Sbjct: 305 RPKALYLALMIRRVINAQSDHSLIDDKDYYGNKRLELAGSLLALMFEDLFKRFNWELKKI 364

Query: 387 GTSAVLKES----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
               + K      DI    R   I + +   +++GN +  +      M+  G   + + +
Sbjct: 365 ANKNIPKTKAAAFDIVNHMRHDLITNGLVFAISSGNWTIKRFR----MERHG---VTQVL 417

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L    
Sbjct: 418 SRLSYISALGMMTRVHSQFEKTRKVSGPRSLQGSQWGMLCPNDTPEGEACGLVKNLALMA 477

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGYILDQIATSL 558
            I+  +P +++ ++   +++LG+  +  +   +   E    V ++G +VG +  Q    L
Sbjct: 478 HITTEVPEELIIKL---VLNLGVENIYTLAGEELTSEDIYSVFVNGIMVGIV--QNHKRL 532

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------- 608
           V + R+L+  G     S   +Y +   K       + + +  GR+ RP++          
Sbjct: 533 VRQFRLLRRRG--YINSFVSIYTQHRHKC------IQISSDGGRLCRPLIIVKNAKSLVK 584

Query: 609 ---------NLAA-------GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLS 652
                    N+ +       G IE++   E+    I  T  E     TTH E+++   L 
Sbjct: 585 PKHIENLERNITSFEDFLYDGLIEYLDVNEENDSLIACTESEINEN-TTHLEIAEFTILG 643

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
             A LIP P  NQSPRN YQC MGKQ MG    N R +    +Y L  P +P  +    +
Sbjct: 644 VCAGLIPYPHHNQSPRNTYQCAMGKQAMGIIGYNQRNRIDTVMYNLVYPQTPIVKTRAIE 703

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
            ++ D  P G NAIVAV+SY+GYD+EDA+I NK+S +RG+    ++++    L+   N  
Sbjct: 704 LINYDKLPAGENAIVAVMSYSGYDIEDALIFNKASIDRGYGRCLVYRNAKCILKKYANRT 763

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
               M   +DG+                               + P  K   + L  DG+
Sbjct: 764 QDTIMGPMLDGNT------------------------------KKPITK--HEVLDVDGI 791

Query: 833 VYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR--------MSSGFTEGGSV 884
           V  G  +  +  M +    + +  +    SG  +      R        M   + E   V
Sbjct: 792 VLPGEMVENKTVMVNKSVPTPSENIGPVSSGTIQTQAVEYRNAEIPFKGMVPAYVEKVIV 851

Query: 885 TPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           T N        +  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PDI+ NP
Sbjct: 852 TSNADDCFLTKLLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFNDHGICPDIIMNP 911

Query: 940 HGFPSRMTIGFL 951
           HGFPSRMT+G L
Sbjct: 912 HGFPSRMTVGKL 923



 Score = 46.2 bits (108), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++GYNY G +  Y+G+ G  +   I+ G V+YQ+L+HMV DK   +
Sbjct: 958  KNGYNYLGKDFFYNGMTGKPLIGYIYSGPVYYQKLKHMVQDKMHAR 1003


>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
           IC-167]
 gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
          Length = 1131

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 249/953 (26%), Positives = 411/953 (43%), Gaps = 139/953 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
            I SF+  +D  L   V+     EF I    +K+  +   + +P+    P G+  N  YP
Sbjct: 49  QIDSFNDFVDRKLKEIVQ-----EFNIDLGDVKVKFIDVEVGKPRFKE-PTGVE-NVIYP 101

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  + V    +G+   T T  +G +PIM+KSK C+L  L P  ++++ 
Sbjct: 102 MEARLRNITYAAPMRLKVMLYINGEEY-TETVPLGDLPIMVKSKYCNLYGLKPQAIVKKL 160

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI--KRNAWKNRGLLFSDLGVYIRSVKRD 249
           E P++ GGYFI+ G E++V    +   N PI    +R A +        +G   R+    
Sbjct: 161 EDPNDPGGYFIINGSERVVVSQEDLALNKPIYDYDERGATRIPRAKIISMGPGYRTTVVV 220

Query: 250 ESATNNVLHF-VTNGSARFMFSHRKSMCLLGMMQSLH-----------EEGIHTQHDSKV 297
           E   + V++  +     R  F     M  LG+ +              +  +    +  +
Sbjct: 221 EYHKDGVIYVQIPKIPTRMPFP--VVMRALGLEKDQDIALAVSDNDEIQRELLASFEMAI 278

Query: 298 FFGQIFKEKLQYDLR-----HLNEVEICDYM--LTNCILPHLDDYWDKFLCLSHMTCKLF 350
                  E   Y  R     H  E+ I   +  L    LPHL    D  + LS    +L 
Sbjct: 279 QIAPTVDEARDYIGRRIVLGHPREIRIQRALEYLDKYFLPHLGTTPDDKVRLSK-AIELG 337

Query: 351 HVVQGMVQL-------DSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSA 390
             V G+++L       D +D +  + +   G L  QL +              EK  +  
Sbjct: 338 QAVAGVIELYKGWRQPDDKDHMSNKRVRLVGDLLAQLFRSIFAQFVQDLRNQLEKQYSRG 397

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSH 450
            + E  +    RA  I   + + L+TGN   GK    Q++  + +V           +SH
Sbjct: 398 KIPE--LRTIVRADIISDRLKHALSTGNWVGGKTGVTQMLDRTNYV---------STISH 446

Query: 451 FRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            R V   S  +     E R L    WG +C + TP+G  CGL+ ++     ++  +    
Sbjct: 447 LRRVV-SSLSRTQPHFEARDLHPTQWGRLCAIETPEGQNCGLVKNMALMATVTVGVDE-- 503

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
            A + ++L  +G++ +    ++  + A  V+L+GR++G   D    +LV  +R  +  G+
Sbjct: 504 -ASVEAMLREMGVINVLDARRNEIKGA-NVLLNGRLIGIHRD--PQALVNAIREARRRGD 559

Query: 571 KIPKSLEIVYLKRPEK-------GMGLYPGLYLFTGPGRMLRP-VMNLAAGNIEWIGTFE 622
            I   + + Y+++  +       G    P L +  G  R+ +  +  L +G   W    +
Sbjct: 560 -INGEVNVGYIEKLNEVRVNCDGGRLRRPLLIISNGKLRLTKEHIEKLRSGEWTWDDLVK 618

Query: 623 QVFMDICITMKEAYPGIT------------THRELSKTDFLSNLANLIPMPDCNQSPRNM 670
              ++     +E    +T            TH E+  +  L  +A++IP  + NQSPRN+
Sbjct: 619 NGIVEYLDADEEENAMVTIGDTKDVDLSKYTHMEIIPSIMLGAVAHIIPYSEHNQSPRNI 678

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           Y+  M KQ++G P  N+RY+   + + L  P  P       + +     P G NA++A++
Sbjct: 679 YEAAMAKQSLGFPYSNYRYRIDSRGHLLLYPERPLVTTRGLELIGYSMRPSGQNAVLALV 738

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           S+ GY +EDA+++NK++ ERG     +F+S+F      Y  Y TE M   + G   +  I
Sbjct: 739 SFMGYSIEDAVMINKAAIERG-----MFRSIF------YRSYETEAMRYPM-GENDRITI 786

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK---LNERDP--M 845
               V               +DY G +      ED + P   V+V +K   + +  P   
Sbjct: 787 PPPTV---------------RDYRGAEAYAHLDEDGIVPPE-VFVSSKEVLIGKISPPRF 830

Query: 846 YSYWKESE------NRYVTCRYSGKEEM-CVEVVRMSSGFTEGGSVTPNCAYIGYRIQRN 898
           YS   ES+      +  +T R   K  +  V +   S GF            +  R  R 
Sbjct: 831 YSALAESQLAGEWKDNSITVRRGEKGIVDQVLITESSEGF--------KLIKVKVRELRI 882

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P +GDKFASR GQKG+  +  P ED+PFT++G+ PD+V NPH  PSRMTIG L
Sbjct: 883 PELGDKFASRHGQKGVVGMIVPMEDMPFTENGITPDVVINPHALPSRMTIGQL 935



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 742  ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
            +++ + +E G   G I +SM   +++GY + G ETMYSG+ G+ + A IF GVV+YQ+L 
Sbjct: 950  LVDATPFE-GVPEGTI-RSML--MKAGYRWSGRETMYSGLMGTRLDADIFIGVVYYQKLH 1005

Query: 802  HMVSDKWQTK 811
            HMV+DK   +
Sbjct: 1006 HMVADKIHAR 1015


>gi|299741189|ref|XP_001834288.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298404597|gb|EAU87529.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1149

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 225/889 (25%), Positives = 375/889 (42%), Gaps = 113/889 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  VT+ ++  GK+       +GR+PIML+S +C L   T AQL   
Sbjct: 105 PHECRLRDTTYSAPIIVTIQYTR-GKSIVQRNVNIGRLPIMLRSNKCVLTGKTEAQLARM 163

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN---------------AWKNRGLL 235
            E P + GGYF+V G EK++ +     +N  I    N                 K++  +
Sbjct: 164 TECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVETDNVKGIVQASCTSSTHGGLKSKTYV 223

Query: 236 FSDLG-VYIR--SVKRDESATNNVLHFVTNGSARFMF-----SHRKSMCLLGMMQSLHEE 287
            +  G +Y+R  S+  D      +           +      +          ++   + 
Sbjct: 224 ITKKGRIYLRHNSIHEDVPIVIALKALGIQSDKEILLLTAGNTEEYKTIFSANIEDAAKL 283

Query: 288 GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLS 343
           GI T+H +  + G   K   +         E     L   +L H+     D+  K + ++
Sbjct: 284 GIFTRHQALEYIGARVKVNRKVMGPRRPAWEEALEALATIVLAHVPVQGLDFRAKAIFVA 343

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVLKE 394
            MT ++   +     +D  D +  + +   G L L LL ++         KS    VLK+
Sbjct: 344 TMTRRVLMAMDDESMVDDRDYVGNKRLELAGQL-LALLFEDLFKTYNSNLKSAIDKVLKK 402

Query: 395 SDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMAENINRMRYMSH 450
               + F A +      + L +G V A       L    M+ +G   +   ++R+ ++S 
Sbjct: 403 PSRTSEFDAFNTMQMQGDHLTSGFVRAISTGNWSLKRFKMERAG---VTHVLSRLSFISA 459

Query: 451 FRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
              + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +  
Sbjct: 460 LGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEE 519

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
             + ++ + ++ +  + LT   +     + +V ++G I+G  + +  T  V + R L+  
Sbjct: 520 GPIIRL-AFMLGVEDISLTTGTEIYGPNSYVVYINGTIIG--VTRTPTKFVSQFRKLRRA 576

Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VMNLAAG 613
             +       VY+    +       +++ +  GR+ RP               ++ L  G
Sbjct: 577 --RRFSEFVSVYINHHHRA------VHIASDGGRICRPMIIVEKGRSRVTSDHIVQLKKG 628

Query: 614 NI-----------EWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPD 662
           N+           E++   E+    I +   +  P  TTH E+     L  +A LIP P 
Sbjct: 629 NVTFDDFLRKGLVEYLDVNEENDTFIALHEHDIVP-TTTHLEIEPFTILGAVAGLIPYPH 687

Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
            NQSPRN YQC MGKQ +G    N   +    LY    P  P  +    + +  D  P G
Sbjct: 688 HNQSPRNTYQCAMGKQAIGAIAYNQMNRIDTLLYLSVYPQQPMVKTRTIELIGYDRLPAG 747

Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
            NA VA++SY+GYD+EDA+ILNK+S +RG+    + +     L    N        + +D
Sbjct: 748 QNATVAIMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLLRKYPNGTFDRLADAPLD 807

Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK--LN 840
            +  Q Q  + +V    L                      + +++ P G +YV  +   N
Sbjct: 808 EN-GQIQRRYDIVQADGL--------------------PGVGERVDP-GDIYVNKQSPTN 845

Query: 841 ERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT 900
             D  ++  + +   Y     S K  +C  + ++    T+          +  R  R P 
Sbjct: 846 ATDNTFT-GQAASVPYKNAPLSYKSPVCGMIDKVMISDTDNDQT---LIKVLIRQTRRPE 901

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +GDKF+SR GQKG+C +    EDLPF + G+VPD + NPHGFPSRMT+G
Sbjct: 902 LGDKFSSRHGQKGVCGLIVNQEDLPFNEDGIVPDTIMNPHGFPSRMTVG 950



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 26/163 (15%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG------ 793
             ++  K  Y   F    +     I +E G++Y G + + SG+ G  ++A ++FG      
Sbjct: 961  GVLTGKLQYGTAFGGSKVEDMSRILIEHGFSYGGKDMLTSGITGEPLEAYVYFGPIYYQK 1020

Query: 794  ---VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK 850
                V++Q+L+HMV DK   +    R    +   +    +G + +G    ERD +  Y  
Sbjct: 1021 AILTVYFQKLKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEM--ERDCLIGY-- 1076

Query: 851  ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                        G  ++ +E + +SS   E G+    C  +GY
Sbjct: 1077 ------------GATQLLLERLMISSDKFEVGACQ-ECGLMGY 1106


>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1729

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 239/907 (26%), Positives = 377/907 (41%), Gaps = 182/907 (20%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN---- 216
            +G++P+ML+SK C L N    +L +  E P + GGYF++ G EK++    R+  NN    
Sbjct: 166  LGQIPMMLRSKNCALFNKKDYELEKMNECPYDQGGYFVINGSEKVLIAQERMANNNVYVF 225

Query: 217  RRNHP-----IAIKRNAWKN----RGLLFSDLGVYIRSVKRDESATNNV----------- 256
             R  P     +A  R+A +        L++ +    R   + ESA N +           
Sbjct: 226  HRKPPAKYSYVAEIRSALETGHRPANTLYTKM--LTRGQSKGESAGNRIQCTLPYIKTDI 283

Query: 257  --------LHFVTNGSARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
                    L FV++   R +  H     +   ++ M++   EE +  Q +  V    I K
Sbjct: 284  PIVVVFRALGFVSD---RDVLDHVIYDYQDQEMMEMLRFSLEEALPIQ-EQPVALDFIGK 339

Query: 305  EKLQYDLRHLNEVEICDYMLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLD 360
              L       N +     +L   +LPH+   D+ +  K     ++  +L     G  +LD
Sbjct: 340  RGLVQGATRENRIRYAKEILQKELLPHVGVTDHSETKKAYFFGYIVHRLLQAALGRRELD 399

Query: 361  SED-----SIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESD------IYAAFRASSIESA 409
              D        L   + GG   L   K  K   +++ K+ D      + AAF+A  I   
Sbjct: 400  DRDHYGNKRCDLAGALVGGLFRLLFRKLIKDVKASLQKDVDKRHEFNLLAAFKAKIISDG 459

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSS 466
            +   LATGN    K +       S      + +NR+ Y   +SH R ++     +E + +
Sbjct: 460  LRYSLATGNWGDAKKAHESRAGVS------QVLNRLTYASTLSHLRRLN-SPIGREGKLA 512

Query: 467  EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
            +PRQL+   WG +CP  TP+G  CGL+ +L     IS   P+  + +      +  +   
Sbjct: 513  KPRQLQNTQWGVMCPAETPEGQACGLVKNLALMAYISVGSPALHIIEFLEEWATENLEET 572

Query: 527  TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEK 586
            TP  QSI  Q+  + ++G  VG  +   A  LV  L  L+   +  P+   +  ++  E 
Sbjct: 573  TP--QSIL-QSTKIFVNGCWVG--IHAQANELVRTLAQLRQRTDISPEISIVPDIRERE- 626

Query: 587  GMGLYPGLYLFTGPGRMLRPVMN------------------------------------- 609
                   L +++  GR +RP+                                       
Sbjct: 627  -------LRIYSDAGRAMRPLFVVEDERLSIRREHIDALKQAAQADRAGEHIDNPMRWPE 679

Query: 610  -LAAGNIEWIGTFEQVFMDICITMKE----------AYPGITTHRELSKTDFLSNLANLI 658
             +  G IE+I T E+    I +  ++          AY    TH E++    L   A++I
Sbjct: 680  LITTGVIEYIDTQEEETRMIAMHPEDLDYARREGRGAYCSTHTHCEINPAMILGVCASII 739

Query: 659  PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
            P PD NQSPRN YQ  MGKQ MG    N++ +     + L  P  P       + L  D+
Sbjct: 740  PFPDHNQSPRNCYQSAMGKQAMGVYISNFQVRLDTMSHTLYYPQKPLTTTRSMEYLHFDS 799

Query: 719  FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
             P G NAIVA+  Y+GY+ ED++++N+S+ +RG     +F+S+F      Y  Y  E   
Sbjct: 800  LPAGMNAIVAISVYSGYNQEDSVVMNQSAIDRG-----LFRSLF------YRSYKDEVKP 848

Query: 779  SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK 838
            +G+D          G   +++    +    +   Y           DKL  DGLV  G +
Sbjct: 849  AGLD---------VGDEEFEKPSLEIVAGMRHSSY-----------DKLDADGLVAPGTR 888

Query: 839  L--------------NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +              +E++ +    K    R  +      E   V+ V +S    E G  
Sbjct: 889  VSGDDFIIGKTTPIPDEKNELAQTMKRYRKRDASTALRSTENGIVDTVMLS--VNEDGHR 946

Query: 885  TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                   G RI   P +GDKFASR GQKG C + +  ED+P+   G+ PDI+ NPH  PS
Sbjct: 947  FVKVRVRGIRI---PQIGDKFASRHGQKGTCGITYRQEDMPYNAEGITPDIIINPHAIPS 1003

Query: 945  RMTIGFL 951
            RMTIG L
Sbjct: 1004 RMTIGHL 1010



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E  Y+ YG E +++G  G  M  Q++FG  +YQRL+HMV DK  ++
Sbjct: 1046 EFRYHPYGNEVLFNGHTGKKMNTQVYFGPTYYQRLKHMVDDKIHSR 1091


>gi|383862931|ref|XP_003706936.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Megachile
           rotundata]
          Length = 1132

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 247/971 (25%), Positives = 408/971 (42%), Gaps = 162/971 (16%)

Query: 72  HIASFDFMLDEGLDLAVE-------DIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           HI SF++ ++  +   V+       D  P+ +  Y     LN+    +  P V  G    
Sbjct: 43  HIDSFNYFINTEIKKIVKANEKVLSDADPLFYVKY-----LNV---HVGSPDVEEG---- 90

Query: 125 HFNKYYPT---EARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN 181
            FN   PT   E R     YS P  V + +    +        +GR+PIML+S  C L  
Sbjct: 91  -FNVTRPTTPHECRLRDLNYSAPITVDIEYIRGHQPIIRNNLLIGRMPIMLRSSNCVLTG 149

Query: 182 LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD-LG 240
            +  +L +  E P + GGYF++ G EK+            I I+    +NR +L  D  G
Sbjct: 150 KSHFELAKMNECPHDPGGYFVINGQEKV------------ILIQEQMLRNRIILEEDNKG 197

Query: 241 VYIRSVKRDESATNNVLHFVTNGSARFM--------------------FSHRKSMCLLGM 280
             + S            + +  G   +M                     S ++ M L+G 
Sbjct: 198 CIVASCNSSTHERKTKTNIIGKGGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGT 257

Query: 281 -----------MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI- 328
                      ++  H   +  Q+ +  F     K+K    ++     E+ D + TN + 
Sbjct: 258 EEEFMKKFAPSLEECHVLNVFAQNQALRFLNNKRKQKRFSVIKSSITDEMKDILATNVLS 317

Query: 329 -LPHLD-DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLK 382
            +P +D ++  K   ++ M  K+         +D  D    + +   GSL    +  L K
Sbjct: 318 HVPVVDFNFKMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFK 377

Query: 383 K---------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
           +         +K+       + DI    R   I + +   +++GN +  +      M+  
Sbjct: 378 RFNWELKQIADKNIPKIKAAQFDIVKHMRQDQITNGLAFAISSGNWTIKRFK----MERH 433

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 434 G---VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCG 490

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGY 549
           L+ +L     I+  I  + + ++     +LG+  +  +   +    +  MV L+G I+G 
Sbjct: 491 LVKNLALMTHITTEIDEEPIIRLA---FNLGVENVNILGGEEINNRKVYMVFLNGNILGI 547

Query: 550 ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
           + +     LV   R+L+  G  +      +Y +   +       + + +  GR+ RP + 
Sbjct: 548 VKN--YQRLVNVFRLLRRKG--LINGFVSIYTQHQHRC------IQISSDGGRLCRPYII 597

Query: 610 LAAGN--------------------------IEWIGTFEQVFMDICITMKEAYPG-ITTH 642
           +  G                           IE++   E+   D  I   E++    TTH
Sbjct: 598 VQKGEPLIQAEHIKLLEHGVRCFEDFLNDGLIEYLDVNEE--NDSSIAFNESHINEKTTH 655

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L   A L+P P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P 
Sbjct: 656 LEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQ 715

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
           +P  +    + ++ D  P G NAIVAV+SY+GYD+EDA+ILNK+S +RG+    I+++  
Sbjct: 716 APMVKSRTIELINFDKLPAGQNAIVAVMSYSGYDIEDALILNKASIDRGYGRCLIYRNAK 775

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
             L+     Y  +T Y  + G ++ +     V      +H + D              K 
Sbjct: 776 CTLKR----YANQT-YDRIMGPLIDSNTKKSV-----WKHDIIDSDGIAAPGEMVENRKV 825

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTE 880
           + +K  P   V +G       P+ S   +++  Y  V   + G     VE V +SS   +
Sbjct: 826 MVNKSSPS--VNIG-------PVNSGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSNAED 876

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
              +      +  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++ NPH
Sbjct: 877 AFLIK-----LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDYGICPDMIMNPH 931

Query: 941 GFPSRMTIGFL 951
           GFPSRMT+G L
Sbjct: 932 GFPSRMTVGKL 942



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 8/103 (7%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ GYNY G +  YSG+ G  +QA I+ G V+YQ+L+HMV 
Sbjct: 957  FHYGTAFGGSKVEDVCEELVKHGYNYLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQ 1016

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            DK   +    R    +   +    +G + +G    ERD +  Y
Sbjct: 1017 DKMHARSRGPRAVLTRQPTEGRAKEGGLRLGEM--ERDCLIGY 1057


>gi|452986015|gb|EME85771.1| hypothetical protein MYCFIDRAFT_40745, partial [Pseudocercospora
           fijiensis CIRAD86]
          Length = 1132

 Score =  233 bits (595), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 257/1002 (25%), Positives = 416/1002 (41%), Gaps = 177/1002 (17%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
           K+LTD       DK N    FL   G    H  SFD+ +D  L   ++    I  +   K
Sbjct: 14  KSLTDP-INTAADKWNLLPAFLRVKGLIKQHTDSFDYFVDIELKKILKANEFIFTDDKRK 72

Query: 102 TLKLNIVKAAISEP-KVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
            +K   V   + +P ++     G    +  P E R     Y+ P  + + + +  +AG  
Sbjct: 73  WIKF--VDIRVGKPCRIEDARAGYVQTEVTPNECRLRDMTYAAP--IYLDFIYPRQAGNV 128

Query: 161 FTKEV--GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
               V  GR+P+ML+S +C L+  + +++    E   + GGYFIV G EK+         
Sbjct: 129 RKTNVLIGRLPMMLRSSKCVLKGRSESEMACLNECAVDPGGYFIVRGQEKV--------- 179

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK----- 273
              I ++    KNR ++ S  GV   SV    +A      +V          H       
Sbjct: 180 ---ILVQEQLSKNRVIVESFKGVIQASVT-SHTANVKTKTYVLLKKGHIYLKHNSLSEDI 235

Query: 274 --SMCLLGM-MQSLHE-------------------------EGIHTQHDSKVFFGQIFK- 304
             ++ L  M +QS HE                         EG+ TQ  +  F     K 
Sbjct: 236 PVAVMLRAMGVQSDHEILLLAAGNDAQYQDEFAPNLELAALEGVFTQEQALDFIATRLKP 295

Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLD 360
           ++     +     +     L   I+PH++    ++  K L ++ MT ++   +     +D
Sbjct: 296 DRFASRRQERTPKQQALEKLAGTIIPHVEVEGMNFRPKALYVAFMTRRVLMAMNDPKLVD 355

Query: 361 SEDSIMLQEIMTGG--------SLYLQLLKKEKSGTSAVLKESDIYAAFR--------AS 404
             D +  + +   G         L+   +++ K     +LK+++    F          S
Sbjct: 356 DRDYVGNKRLELAGQMLSLLFEDLFKDCVRQIKGNMDKILKKANPTQEFDPLRLVEQIES 415

Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEM 463
            I S M   ++TGN +  +      M  +G   +   ++R+ Y+S    + R  S F++ 
Sbjct: 416 RITSGMERAISTGNWTLKRFR----MDRAG---VTHVLSRLSYISALGMMTRITSQFEKT 468

Query: 464 RS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           R  S PR L+   +G +C   TP+G  CGL+ +L     I+    +   A +  ++  LG
Sbjct: 469 RKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT---ADDEAPVRKIIYILG 525

Query: 523 MLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVY 580
              +T V   +     A +V ++G      L +     +   R  + +G +I + + I  
Sbjct: 526 AEDVTSVSGTEIYGNGAYIVFINGTPAA--LTRQPKQFLLGFRKFRRMG-RISEFVSIFI 582

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVM--------------------------NLAAGN 614
                     + G+++ T  GR+ RP++                           L+ G 
Sbjct: 583 NHH-------HNGVHIATDEGRVCRPLIVVEKGKSKVTARFLESLRKGAMDFDDALSRGL 635

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           +E++   E+   +I +  K+     TTH E+     L  +A LIP P  NQSPRN YQC 
Sbjct: 636 VEYLDVNEENDSNIAVYEKDINEH-TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCA 694

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ +G    N   +    LY +  P  P       + +  D  P G NA+VAV+SY+G
Sbjct: 695 MGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVTTRTIELVKYDKLPAGQNAVVAVMSYSG 754

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YD+EDA++LNK+S +RGF    IFK + + L++  N Y                      
Sbjct: 755 YDIEDALVLNKASCDRGFGRCQIFKKISMPLKAYGNGY---------------------- 792

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE--S 852
                          T     RDP+N     K+G DGLV VG++L   D MY       +
Sbjct: 793 ---------------TDRLDDRDPSN-TRHRKIGKDGLVEVGSELENGD-MYMLKASPIN 835

Query: 853 ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA-----YIGYRIQRNPTVGDKFAS 907
           +++ +  +      M +        + +   +T N A      I  R  R P +GDKF+S
Sbjct: 836 QSQAIPQKDQKWSPMHMSYKLPDPSYADKVMITANEANTTILKIQTRQTRRPEIGDKFSS 895

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           R GQKG+  +     D+PF+DSG+VPDI+ NPHGFPSRMT+G
Sbjct: 896 RHGQKGVVGLLAEQADMPFSDSGVVPDIIMNPHGFPSRMTVG 937



 Score = 47.0 bits (110), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 17/154 (11%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I ++ G++Y G + + SG+ G  +   +FFG ++YQ+
Sbjct: 948  GVLTGKQEYGTPFGGSKVEDMGSILVKHGFSYSGKDHLTSGITGESLPFYVFFGPIYYQK 1007

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            L+HMV DK  ++    R    +   +     G + +G    ERD + +Y           
Sbjct: 1008 LKHMVQDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEM--ERDCLIAY----------- 1054

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
               G  ++ +E + +SS       V   C  +GY
Sbjct: 1055 ---GASQLLLERLMISSD-AHDVDVCQGCGMMGY 1084


>gi|407926681|gb|EKG19645.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
           phaseolina MS6]
          Length = 1189

 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 240/920 (26%), Positives = 387/920 (42%), Gaps = 167/920 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE----VGRVPIMLKSKRCHLRNLTPAQ 186
           P E R     Y+ P  V V +    K G    K     +GR+PIML+S +CHL   + +Q
Sbjct: 140 PNECRLRDMTYAAPIVVDVEY----KKGNVKVKRKGIHIGRMPIMLRSNKCHLWGKSESQ 195

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNA------------WKNRGL 234
           + + GE   + GGYFI  G EK++ +     +N  I                   K++G 
Sbjct: 196 MGQLGECSIDPGGYFITRGQEKVILVQEQLSKNRVIVESMKGIIQASVISFTVDRKSKGY 255

Query: 235 LF--------------SDLGVYIRSVKRDESATNNVLHFVTNGSARFM--FSHRKSMCLL 278
           +                D+ V I        + + +L  V    + +   F+     C  
Sbjct: 256 VLLKKGLLYLKHNCFTEDIPVVIAFKAMGIQSEHEILLLVAGDDSAYQDEFAVNFEACY- 314

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQ----YDLRHLNEVEICDYMLTNCILPHLD- 333
               +   E I+TQH +  + GQ  ++  +       R+L +  I    L+N ++ H+  
Sbjct: 315 ----NEKNERINTQHQALEYVGQRTRQLRKPIGNRQARNLQQEAI--DALSNMMMSHVPV 368

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------ 384
              ++  K L +++MT ++   +     +D  D +  + +   G +   L +        
Sbjct: 369 VGMNFRPKALYIAYMTRRVLMAIHDPKMVDDRDYVGNKRLELAGQMMALLFEDSFKSFNY 428

Query: 385 --KSGTSAVLKESDIYAAFRAS--------SIESAMTNFLATGNVSAGKNSTLQLMQASG 434
             K+    +LK+ +  A F A         SI + M   +ATGN S  +      M+ +G
Sbjct: 429 QFKAAIDKILKKPNRAAEFDAYDHIQTHGWSITAGMERAIATGNWSLKRFR----MERAG 484

Query: 435 FVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL 492
              +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL
Sbjct: 485 ITHV---LSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGL 541

Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVL--------------------VSLGMLPLTPVIQS 532
           + +L     I+  +P   + +I  +L                    V +   PL   +  
Sbjct: 542 VKNLALMTHITTEVPEDPVKRIVFILGAEDVQSASGTELYSDGAYIVFVNGSPL--ALTR 599

Query: 533 IPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE--KIPKSLEIVYLKRPEKGMGL 590
            P Q L      R +G I + ++  +    R ++I  +  +I + L +V     E+G   
Sbjct: 600 EPRQFLNGFRKFRRMGRISEFVSIHINHHHRAVQIATDEGRICRPLIVV-----ERGKSR 654

Query: 591 YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICI---TMKEAYPGITTHRELSK 647
               YL       +     ++ G +E++   E+   +ICI    +KE +    TH E+  
Sbjct: 655 VSARYLRALQKGTMEFDDFISRGLVEYLDVNEENDSNICIYEKDLKEHH----THLEIEP 710

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 711 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQQPMVK 770

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +  D  P G NA VAV+SY+GYD+EDA+++NK+S +RGF    +FK        
Sbjct: 771 TRTIELIKYDKLPAGQNATVAVMSYSGYDIEDALVINKASCDRGFGRCQVFKK------- 823

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
                 T T+ S  +GS                +  ++   +  D    +P +K + +  
Sbjct: 824 -----ATTTLKSYANGS----------------QDKITGPERNADGTPVNPRHKKVGES- 861

Query: 828 GPDGLVYVGAKLNERDPMY------------------SYWKESENRYVTCRYSGKEEMCV 869
             DG+  VG  L E+D +Y                     + +E R     Y   +   V
Sbjct: 862 --DGIAEVGMLL-EKDDVYLNKFVPVQTNPVGLEEQQRRKQPTEFRPTPMSYKLPDPAYV 918

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + V +    TE  S TP    I  R  R P +GDKF+SR GQKG+  +     D+PF D 
Sbjct: 919 DKVLL----TENESNTP-VIKIQTRQTRRPELGDKFSSRHGQKGVVGIIAEQIDMPFNDQ 973

Query: 930 GLVPDIVFNPHGFPSRMTIG 949
           G+ PDI+ NPHGFPSRMT+G
Sbjct: 974 GICPDIIMNPHGFPSRMTVG 993



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 17/132 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I LE+G++Y G + + SG+ G  + A +FFG ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1027 ILLEAGFSYSGKDMLTSGITGECLPAYVFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1086

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1087 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMLSSDAHE-C 1129

Query: 883  SVTPNCAYIGYR 894
             V   C  +GY+
Sbjct: 1130 DVCERCGMMGYQ 1141


>gi|305663643|ref|YP_003859931.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
           17230]
 gi|304378212|gb|ADM28051.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
           17230]
          Length = 1150

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 247/973 (25%), Positives = 398/973 (40%), Gaps = 166/973 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++  +++ L   + +   IE  I G   K+ I    + EP+V      I+ N   P
Sbjct: 51  HIDSYNAFIEKILGEIIMEEPVIETSIPG--FKVVIKGWRVGEPQVKEIDGSINRN-ITP 107

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     YS P  +T+    +   G      +G +P+M+KS +  L  +T  +LI+ G
Sbjct: 108 MECRHRDITYSVPIYITLVPYENDVPGNPVEVLIGEIPLMVKSSKDPLSKMTSEELIKIG 167

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS------ 245
           E P + GGYFI+ G E+++    +   N  I      +   GL  +     I S      
Sbjct: 168 EDPKDPGGYFIIDGTERIIVAQEDLASNRVIV----DYGQEGLNITHTAKVISSTIGYRV 223

Query: 246 ---VKRDESATNNVLHFVTNGSARFMFSHRK-----------SMCLLGMMQS------LH 285
              + R +  T +V      G   F+   R            ++    ++Q+      + 
Sbjct: 224 PVIMDRHKDGTLHVSFPAVPGKIPFVVLMRALGLERDFDIAIAVSFDPVIQNELLPSFVQ 283

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLC 341
              I T  D+  + G     ++       + +E   Y+L    LPHL    +D   K L 
Sbjct: 284 ASDIATVEDALDYIGS----RIAIGQARESRIERAKYVLDKYFLPHLGSKPEDRLRKALF 339

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-----------YLQLLKKEKSGTSA 390
           L  M CKL   V G   +D +D    + I   G +           +L+ L+ +      
Sbjct: 340 LGQMACKLIEFVLGYRPVDDKDHYANKRIKLAGEMLALLFRVAFKAFLRDLRYQLERAKI 399

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM----- 445
             +  +I    R+  I   + + +ATG    G+    Q++  + ++    ++ R      
Sbjct: 400 KERRLNIALYIRSDVITERIKHAMATGTWIGGRTGVSQILDRTNWISSISHMRRTLSPLS 459

Query: 446 RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
           R   HF A               R L    +G +CP  TP+G  CGL+ +L     IS  
Sbjct: 460 RSQPHFEA---------------RDLHGTQFGRLCPFETPEGPNCGLVKNLALMATISVG 504

Query: 506 IPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL---------MVMLDGRIVGYILDQIAT 556
               ++ +I   L   G +P+  + + +    L          V L+G ++GY  +    
Sbjct: 505 EDEHLVEKI---LYDKGTIPILVLFEKVRNGELSYEDIKTWSKVYLNGTLIGYHPN--GK 559

Query: 557 SLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNI- 615
            LV KLR +K  GE +   + I Y +           +Y+ T  GR+LRP+M +  G + 
Sbjct: 560 ELVEKLRDMKHRGE-LSYEVGIAYYR-----TKYINEVYVNTDSGRILRPLMVVENGKLK 613

Query: 616 ---EWIGTFEQVFMDICITMKEAYPGI---------------------TTHRELSKTDFL 651
              E I   ++  M     +K+ Y  +                     TTH E+     +
Sbjct: 614 ITKEVIDKVKKGMMTFEDLVKKGYIELLDPEEEENALVAINPEDIGKETTHVEIWPPAMM 673

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A+ IP  + NQSPRN YQ  M KQ +G    N+  +   + + L  P  P  +    
Sbjct: 674 GVAASTIPYAEHNQSPRNAYQSAMAKQALGFYMANFILRTDTRAHILHYPQIPLVQTRAL 733

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
             +  ++ P G N +VAV+SYTGY+MEDA+I+NKSS +RG A    F+            
Sbjct: 734 SIIGYNDRPSGQNMVVAVMSYTGYNMEDALIMNKSSVDRGLARSNFFR-----------L 782

Query: 772 YGTETM-YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
           Y TE + Y+G                 Q  R  + D  +   Y G++   K     L  D
Sbjct: 783 YSTEELKYAG----------------GQEDRIEIPDP-KVLGYRGKESYTK-----LDED 820

Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSG-------KEEMCVEVVRMSSGFTEGGS 883
           G+  V  ++   + +    K S  R+V   Y G       +++  V V     G+ +   
Sbjct: 821 GIAKVEVQVKGGEALIG--KTSPPRFVE-EYKGYGILAQRRKDSSVTVRHGEIGWVDAVF 877

Query: 884 VTPNCA---YIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
           +T +      I  R++  R P +GDKFASR GQKG+     P  D+P+T  G+ PD++ N
Sbjct: 878 ITSSLEGHRLIKVRVRDLRIPEIGDKFASRHGQKGVIGALIPQYDMPYTPDGITPDLIIN 937

Query: 939 PHGFPSRMTIGFL 951
           PH  PSRMT+G L
Sbjct: 938 PHALPSRMTLGQL 950



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   GTE MY G  G ++   IF G+V+YQ+L HMVSDK   +
Sbjct: 987  GYPMDGTEPMYDGRTGELIGNPIFIGIVYYQKLHHMVSDKMHAR 1030


>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
          Length = 1134

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 248/976 (25%), Positives = 409/976 (41%), Gaps = 171/976 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKT---LKLNIVKAAISEPKVPAGPVGIHFNK 128
           HI SF++ ++    + +++I     E+         L  +  +I  P V  G     FN 
Sbjct: 42  HIDSFNYFIN----VDIKNIVRANDEVKSDADPCFYLKYLNVSIGMPDVEEG-----FNN 92

Query: 129 Y---YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
                P E R     Y+ P  V + ++   +        +GR+PIML+S  C L   +  
Sbjct: 93  TKSTTPHECRLRDMTYAAPITVDIEYTRGTQRVVRNNLLIGRMPIMLRSSNCVLTGKSEY 152

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRL--------LINNRRNHPIAIKRNAW----KNRG 233
           +L +  E P + GGYF++ G EK++ +        +I    N+ I  +  +     K+R 
Sbjct: 153 ELSQVNECPMDPGGYFVIRGTEKVILIQEQVSWNKMITEDYNNVIQCQVTSSTHEKKSRT 212

Query: 234 LLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM--------MQSLH 285
           +L S  G Y              + F   G A    S ++ M L+G+          SL 
Sbjct: 213 ILLSKHGKYYLKHNSMTEEIPVAIIFKAMGIA----SDQEIMQLVGIDTETQKRFAPSLL 268

Query: 286 E---EGIHTQHDSKVFFGQ--IFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
           E     ++TQ  +  + G   I K       ++    +    +L   IL H+     ++ 
Sbjct: 269 EATNHKVYTQQRALEYMGSKLIAKRFTTAATKYKTTADEARDLLATTILAHVPVPNFNFQ 328

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK--------- 383
            K + ++ M  ++         +D  D    + +   GSL    +  L K+         
Sbjct: 329 VKAIYVALMIRRVMAAEVDKSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKMIA 388

Query: 384 EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           +K+       + D+    RA+ I + +   ++TGN +  +      M+ +G   + + ++
Sbjct: 389 DKNIPKIKAAQFDVVKHMRAALISTGLETAISTGNWTIKRFK----MERAG---VTQVLS 441

Query: 444 RMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ 501
           R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     
Sbjct: 442 RLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTH 501

Query: 502 ISEYIPSKVLAQIP--SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
           I+  +  + + ++   S +  + +L    +      +  MV ++G I+G  +      LV
Sbjct: 502 ITTEVDEEPVIRLAYNSGVEDIRLLGGETINNP---KVFMVFINGNILGVTIG--YKRLV 556

Query: 560 PKLRMLK---IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN---- 609
              RM++   ++G  +  S+   + +R          +Y+ T  GR+ RP   V N    
Sbjct: 557 EVFRMMRRKGLIGSFV--SIHTSFTQR---------CVYIHTDGGRLCRPYIIVQNGRPL 605

Query: 610 -------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                              L  G IE++   E+    I     +  P  TTH E+     
Sbjct: 606 VQQEHIEQLKIGLRKFDDFLHDGLIEYLDVNEENDSFIAYQEVDIDPEKTTHLEVEPFTL 665

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y +  P +P  R   
Sbjct: 666 LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRT 725

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++    
Sbjct: 726 IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKR--- 782

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T                    + R+   + D    K  F  +         L  D
Sbjct: 783 -YSNQT--------------------FDRIMGPMKDSLTNKIIFKHEC--------LDTD 813

Query: 831 GLVYVGAKLNERDPMYSY------------WKESENRYVT-----CRYSGKEEMCVEVVR 873
           G++  G K+  +  M +              KE+  + +T       Y G E   +E V 
Sbjct: 814 GIISPGEKVLSKQTMVNKEMPAVKSTNPIEQKEAGQQPITYSPVPITYKGTEPSYIEKVM 873

Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
           +S+   E   V      I  R  R P +GDKF+SR GQKG+  +    EDLPF D G+ P
Sbjct: 874 VSTNNEEEFLVK-----ILLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDFGMSP 928

Query: 934 DIVFNPHGFPSRMTIG 949
           D+V NPHGFPSRMT+G
Sbjct: 929 DMVMNPHGFPSRMTVG 944



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
             ++G+N+ G +  YSG+ G  ++  I+ G V+YQ+L+HMV DK   +    R    +   
Sbjct: 980  FKNGFNFLGKDIFYSGITGEPLEMYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPT 1039

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
                 +G + +G    ERD + SY
Sbjct: 1040 QGRSREGGLRLGEM--ERDCLISY 1061


>gi|358366889|dbj|GAA83509.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1233

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 270/1030 (26%), Positives = 428/1030 (41%), Gaps = 218/1030 (21%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI S++++++  L   VE  + I  ++   
Sbjct: 98   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDV-DH 155

Query: 102  TLKLNIVKAAISEPKVPAGP----VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            T  +      +  P+    P        ++   P E R   + Y+ P  V   +    + 
Sbjct: 156  TFYIKFTNIYLGFPRRADEPQDARADFTYSTVSPQECRLRDTTYAAPIQVDFEYVRGRQR 215

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                   +GR+P+ML+S +C L N TPA++    E P + GGYFIV G EK+        
Sbjct: 216  VMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVNGTEKV-------- 267

Query: 218  RNHPIAIKRNAWKNRGLLFSD-------LGVYIRSVKRDESA-----------TNNVLH- 258
                I ++    KNR ++ +D         V   S +R   +            +NVL  
Sbjct: 268  ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSE 323

Query: 259  ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIF 303
                V    A  + + ++ + L+  +  +++E            GI+TQ  +  + G   
Sbjct: 324  DIPIVILLKAMGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQQQALDWIGARI 383

Query: 304  K----EKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQ 354
            K    +   Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++     
Sbjct: 384  KINRKQSPSYRRTHVQEAVE----AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKN 439

Query: 355  GMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSI 406
                +D  D +  + +   G L    +  L KK     K     VL + +   AF A S+
Sbjct: 440  DASLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSV 499

Query: 407  ESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
             +  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F+
Sbjct: 500  ITMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHV---LSRLSYIAALGMMTRISSQFE 556

Query: 462  EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI 514
            + R  S PR L+   +G +CP  TP+G  CGL      + H+TTN    E  P      I
Sbjct: 557  KTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTN---DEEGP------I 607

Query: 515  PSVLVSLGMLPLTPVIQSIPEQAL------MVMLDG------RIVGYILDQIATSLVPKL 562
             +++  LG       IQ++  + L       + ++G      R   Y LD        +L
Sbjct: 608  RNLIFMLG----AEDIQTVGGKELYGPGCYTISINGTPTALTRRPKYFLDAFR-----RL 658

Query: 563  RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------- 609
            R +  + E +      +Y+   ++       +++ T  GR+ RP++              
Sbjct: 659  RRMGRISEFVS-----IYINHHQRA------VHVATDDGRICRPLIVVENGKSRVNAQHL 707

Query: 610  -------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
                         LA G +E++   E+    I I  K+     TTH E+     L  +A 
Sbjct: 708  EKLRNGTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITE-TTTHLEIEPFTVLGAVAG 766

Query: 657  LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
            LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    +    
Sbjct: 767  LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKY 826

Query: 717  DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            D  P G NAIVAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S  N  GT+ 
Sbjct: 827  DQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSN--GTK- 883

Query: 777  MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYV 835
                                         D+     Y    P  K AL   L  DGL  V
Sbjct: 884  -----------------------------DRLSGPTYENDAPIRKHAL---LESDGLAAV 911

Query: 836  GAKLNERD----------PMYSYWKESE-NRYVT-----CRYSGKEEMCVEVVRMSSGFT 879
            G ++N  +           M S +  S+  R V+       Y   +   ++ V +S    
Sbjct: 912  GEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVMVSVTEN 971

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            E   V      +  R  R P VGDKF+SR GQKG+  +     D+PFTD+G+ PDI+ NP
Sbjct: 972  ENQLVK-----VLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNP 1026

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 1027 HGFPSRMTVG 1036



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1070 ILIDNGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1129

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1130 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1172

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1173 DVCEQCGFMGY 1183


>gi|391325293|ref|XP_003737173.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Metaseiulus occidentalis]
          Length = 1162

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 255/975 (26%), Positives = 409/975 (41%), Gaps = 156/975 (16%)

Query: 63  EFLLTLGAP--HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAG 120
           EFL T G    HIASFD+ ++  +   +E  A I +        +      I  P +  G
Sbjct: 42  EFLKTKGLVLHHIASFDYFVETEMREILEANA-IVYSEADPNWYMEYTDIRIGTPSIVEG 100

Query: 121 PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR 180
           P  I      P + R     Y  P  V +A+    +       E+GR+PIMLKSK C L 
Sbjct: 101 PGMIAATT--PYQCRLRDMTYFAPIYVDIAYKRGNELVIRNELEIGRMPIMLKSKGCVLH 158

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLG 240
           + TP +L +  E P++ GGYFIV G E++V L+     N+ I I  ++   +G++     
Sbjct: 159 SKTPWELTKLRECPNDHGGYFIVKGVERVV-LMAEQLANNRILIDEDS---KGVI----S 210

Query: 241 VYIRSVKRDESATNNVLH-----------FVTNGSARFMF-----------------SHR 272
             + S   +  +  NV+            FV +     MF                    
Sbjct: 211 CQVTSSTHERKSRTNVIEKNGKFYVKHNSFVDDIPVVVMFRAMGVQNDLRIHQMIGTEEN 270

Query: 273 KSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEIC-DYMLTNCI--L 329
             +  +G M   H+  + TQ  +  F     K ++    +  + ++   + +L++ I  +
Sbjct: 271 IQVAFVGSMVECHKLHVFTQEQALRFLAAKMKSRVFGPQKVEDPLDKAWEAVLSSVINHI 330

Query: 330 PHLDDYWDKFLCLSHMTCKLFHVVQGMVQ---LDSEDSIMLQEIMTGGS----LYLQLLK 382
           P     ++  L   ++   +  ++Q       +D  D    + +   GS    L+  LLK
Sbjct: 331 PAQPPEYNMRLRAHYLGLMVRRIIQAKYDRGFIDDRDYYGNKRVELPGSMISLLFEDLLK 390

Query: 383 KEKSGTSAV---------LKESDIYAAFRASSIESAMTNFLATGN--VSAGKNSTLQLMQ 431
           +  S    +         + + DI    + S+I + + N ++TGN  +      T+ + Q
Sbjct: 391 RVNSELKTIADKQIPMMRVTQFDIVKFMKPSTITTGLINAISTGNWIIRRFNMHTIGVTQ 450

Query: 432 ASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTP 489
                     ++R+ Y+S    + R  S+F++ R  S PR L+   +G +CP  TP+G  
Sbjct: 451 V---------LSRLNYISCLGMMTRVNSHFEKSRKVSGPRSLQPSQFGMLCPSDTPEGEA 501

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM--VMLDGRIV 547
           CGL+     N  +  +I     A +    +SLG+  +  +  +    + +  V  +G I 
Sbjct: 502 CGLVK----NMALLAHITINSSADLTDFFISLGVQDVRLLCGAEFSHSHIYHVFHNGVIK 557

Query: 548 GYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG-----LYLFTGPGR 602
           G I D      + ++R  +  G   P      YL        +YP      +Y+ T  GR
Sbjct: 558 GVIEDH--RRFIEEVRQFRRKGFLSP------YL-------SVYPNHIHRCVYIVTDGGR 602

Query: 603 MLRP----------------------VMN----LAAGNIEWIGTFEQVFMDICITMKEAY 636
             RP                      ++N    L  G +E++   E+    I +  K+  
Sbjct: 603 FCRPFIIVENERPRVTSEHLEDLNSHILNFQDFLDIGLVEFLDVNEENDALIAVYEKDIT 662

Query: 637 PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
              TTH E++    LS  A +IP P  NQSPRN YQC MGKQ MG    N   +     Y
Sbjct: 663 DK-TTHLEIAPFTILSACAGIIPFPHHNQSPRNTYQCAMGKQAMGVIGYNQHMRIDTLQY 721

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
            +  P  P         ++ D  P G N  +AV+SY+GYD+EDA++LNK+S ERGF    
Sbjct: 722 NMVFPQRPLVSTKAIKLINFDRMPAGQNVCLAVMSYSGYDIEDAIVLNKNSMERGFGECR 781

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG- 815
           +  S   +L    N      +   VD S  +  IF                 Q  DY G 
Sbjct: 782 VVTSQKCQLRRYPNMACDRILGPLVDASTRKP-IF---------------DHQCLDYDGI 825

Query: 816 RDPANKALEDKLGPDGLVYVG-AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM 874
             P    ++ ++  +  +  G A L+   P+       E + +  RY G     ++ V M
Sbjct: 826 VMPGETVVKGQVLINRHIPAGTASLDPGQPI-------EYKEMPLRYQGTVPAQIDRV-M 877

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
            S   +G ++      +     R P +GDKF+SR GQKG+  +    ED+PF D G+VPD
Sbjct: 878 VSVNADGETLFK----VVMSQTRKPEIGDKFSSRHGQKGVVGLIVGQEDMPFDDQGVVPD 933

Query: 935 IVFNPHGFPSRMTIG 949
           I+ NPHGFPSRMT+G
Sbjct: 934 IIMNPHGFPSRMTVG 948



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 27/155 (17%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
            +G+++ G + +  GV+G  MQA I+ G  +YQRL+HMV DK   +    R    +   + 
Sbjct: 992  NGFHFQGKDILTCGVNGQPMQAYIYRGTCYYQRLKHMVQDKMHARARGPRAVLTRQPTEG 1051

Query: 827  LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
               DG + +G    ERD +  +              G   +  E +  SS  TE   +  
Sbjct: 1052 RSRDGGLRLGEM--ERDCLIGH--------------GAAMLLRERLMFSSDATE-VDICN 1094

Query: 887  NCAYIGYRIQRNPTVGDKFASRA-GQKGICSVKWP 920
             C  IG+          K+  R    + +C+VK P
Sbjct: 1095 VCGLIGFL---------KWCQRCKSSQAMCTVKMP 1120


>gi|134055102|emb|CAK43742.1| unnamed protein product [Aspergillus niger]
          Length = 1225

 Score =  233 bits (594), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 269/1030 (26%), Positives = 428/1030 (41%), Gaps = 218/1030 (21%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI S++++++  L   VE  + I  ++   
Sbjct: 90   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDV-DH 147

Query: 102  TLKLNIVKAAISEPKVPAGP----VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            T  +      +  P+    P        ++   P E R   + Y+ P  V   +    + 
Sbjct: 148  TFYIKFTNIYLGFPRRADEPQDARADFTYSTVSPQECRLRDTTYAAPIQVDFEYVRGRQR 207

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                   +GR+P+ML+S +C L N TPA++    E P + GGYFIV G EK+        
Sbjct: 208  VMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVNGTEKV-------- 259

Query: 218  RNHPIAIKRNAWKNRGLLFSD-------LGVYIRSVKRDESA-----------TNNVLH- 258
                I ++    KNR ++ +D         V   S +R   +            +NVL  
Sbjct: 260  ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSE 315

Query: 259  ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIF 303
                V    A  + + ++ + L+  +  +++E            GI+TQ  +  + G   
Sbjct: 316  DIPIVILLKAMGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQQQALDWIGARI 375

Query: 304  K----EKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQ 354
            K    +   Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++     
Sbjct: 376  KINRKQSPSYRRTHVQEAVE----AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKN 431

Query: 355  GMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSI 406
                +D  D +  + +   G L    +  L KK     K     VL + +   AF A S+
Sbjct: 432  DASLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSV 491

Query: 407  ESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
             +  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F+
Sbjct: 492  ITMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHV---LSRLSYIAALGMMTRISSQFE 548

Query: 462  EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI 514
            + R  S PR L+   +G +CP  TP+G  CGL      + H+TTN    E  P      +
Sbjct: 549  KTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTN---DEEGP------V 599

Query: 515  PSVLVSLGMLPLTPVIQSIPEQAL------MVMLDG------RIVGYILDQIATSLVPKL 562
             +++  LG       IQ++  + L       + ++G      R   Y LD        +L
Sbjct: 600  RNLIFMLG----AEDIQTVGGKELYGPGCYTISINGTPTALTRRPKYFLDAFR-----RL 650

Query: 563  RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------- 609
            R +  + E +      +Y+   ++       +++ T  GR+ RP++              
Sbjct: 651  RRMGRISEFVS-----IYINHHQRA------VHVATDDGRICRPLIVVENGKSRVNAQHL 699

Query: 610  -------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
                         LA G +E++   E+    I I  K+     TTH E+     L  +A 
Sbjct: 700  EKLRNGTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITE-TTTHLEIEPFTVLGAVAG 758

Query: 657  LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
            LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    +    
Sbjct: 759  LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKY 818

Query: 717  DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            D  P G NAIVAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S  N  GT+ 
Sbjct: 819  DQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSN--GTK- 875

Query: 777  MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYV 835
                                         D+     Y    P  K AL   L  DGL  V
Sbjct: 876  -----------------------------DRLSGPTYENDAPIRKHAL---LESDGLAAV 903

Query: 836  GAKLNERD----------PMYSYWKESE-NRYVT-----CRYSGKEEMCVEVVRMSSGFT 879
            G ++N  +           M S +  S+  R V+       Y   +   ++ V +S    
Sbjct: 904  GEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVMVSVTEN 963

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            E   V      +  R  R P VGDKF+SR GQKG+  +     D+PFTD+G+ PDI+ NP
Sbjct: 964  ENQLVK-----VLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNP 1018

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 1019 HGFPSRMTVG 1028



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1062 ILIDNGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1121

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1122 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1164

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1165 DVCEQCGFMGY 1175


>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
 gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
          Length = 1142

 Score =  233 bits (593), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 261/1007 (25%), Positives = 420/1007 (41%), Gaps = 190/1007 (18%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD+      DK N    FL   G    H+ SF++ +D  L        L + D+ P 
Sbjct: 29  KKLTDE-ISTAEDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLRKIIKANQLILSDVDP- 86

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYY---PTEARQTRSVYSGPFNVTVAW 151
             E Y K + + + + +             + +K Y   P E R     YS P  V + +
Sbjct: 87  --EFYLKYVDIRVGQRS-------------NGSKDYLTPPHECRLRDMTYSAPIYVDIEY 131

Query: 152 SWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVR 211
           +           E+GR+P+ML+S +C L     A + +  E P + GGYFIV G EK++ 
Sbjct: 132 TRGRNIIMHKDVEIGRMPVMLRSNKCILHESDEAMMAKLNECPLDPGGYFIVNGTEKVIL 191

Query: 212 LLINNRRNHPIAIKRNAWKNRGLLFSDL--GVYIRSVKRDESATNNVLHFVTNGSARFM- 268
           +     +N  I     A + + ++ + +    + R  K      N  ++   N  A  + 
Sbjct: 192 VQEQLSKNRIIV---EADEKKAIVQASVTSSTHERKSKTYVVTKNEKIYLKHNSIAEDIP 248

Query: 269 ----------FSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFKEK 306
                      S  + M L+    S +++             ++TQ  +  + G   K  
Sbjct: 249 IVVVLKACGIVSDLEVMQLVCGNDSSYQDIFAINLEEAAKLNLYTQQQALEYIGSKVKTV 308

Query: 307 LQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            +  L  L E +E     +   ++ HL     D+ +K L ++ MT ++   +     +D 
Sbjct: 309 RRQKLSVLQEGIE----AIATTVIAHLTVEALDFREKALYIAIMTRRVVMAIYNPKMVDD 364

Query: 362 EDSIMLQEIMTGGSL----YLQLLKKE----KSGTSAVLKESDIYAAFRA--------SS 405
            D +  + +   G L    +  L KK     K+    VLK+ +    + A        ++
Sbjct: 365 RDYVGNKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINVHSNN 424

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMR 464
           I S +   ++TGN S  +      M+ +G   +   ++R+ Y+S    + R  S F++ R
Sbjct: 425 ITSGLNRAISTGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISSQFEKSR 477

Query: 465 S-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVS 520
             S PR L+   +G +C   TP+G  CGL+ +L     I+   E  P K L  +      
Sbjct: 478 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYL------ 531

Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVY 580
           LG+  ++ +  +       V L+G ++G    +  T  +   R L+    K+   + I Y
Sbjct: 532 LGVEDISLLDSASLHLNYGVHLNGTLIGTT--KYPTKFITHFRNLR-RSSKVSAFISI-Y 587

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------------------------- 614
               +K       +++ T  GR+ RP++ ++ G                           
Sbjct: 588 ANSHQK------AVHIATDGGRICRPLIIVSDGQSRVKADHLKKLLDGELVFDDFLKLGL 641

Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
           +E++   E+    I +  K+    I TH E+     L  +A LIP P  NQSPRN YQC 
Sbjct: 642 VEYLDVNEENDSFIALYEKDIDQNI-THMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCA 700

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQ +G    N   +    LY +  P  P  +    + +D D  P G NA VAV+SY+G
Sbjct: 701 MGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSG 760

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YD+EDA++LNKSS +RGF      +     L+   N+  T+ +  G+             
Sbjct: 761 YDIEDALVLNKSSIDRGFGRCETRRKNTTVLKRYPNH--TQDIIGGM------------- 805

Query: 795 VHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL-------NERDPMYS 847
               R+       WQ K               LGPDGL  VG KL       N+  P  S
Sbjct: 806 ----RVDENGEPIWQHK--------------CLGPDGLGEVGMKLDSGQIYINKSIPTNS 847

Query: 848 -----YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
                   +S+ +     Y   E   ++ V MS    +   +      +  R  R P +G
Sbjct: 848 GDGVLTNTQSQYKETPVIYRAPEPSHIDQVMMSVSDNDQALIK-----VLLRQNRRPELG 902

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           DKF+SR GQKG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 903 DKFSSRHGQKGVCGIIVKQEDMPFNDQGICPDIIMNPHGFPSRMTVG 949



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 983  ILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1042

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1043 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1085

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1086 DVCNKCGLMGY 1096


>gi|317025401|ref|XP_001388998.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus niger CBS
            513.88]
          Length = 1226

 Score =  232 bits (592), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 269/1030 (26%), Positives = 428/1030 (41%), Gaps = 218/1030 (21%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI S++++++  L   VE  + I  ++   
Sbjct: 91   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSTIRSDV-DH 148

Query: 102  TLKLNIVKAAISEPKVPAGP----VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            T  +      +  P+    P        ++   P E R   + Y+ P  V   +    + 
Sbjct: 149  TFYIKFTNIYLGFPRRADEPQDARADFTYSTVSPQECRLRDTTYAAPIQVDFEYVRGRQR 208

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                   +GR+P+ML+S +C L N TPA++    E P + GGYFIV G EK+        
Sbjct: 209  VMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVNGTEKV-------- 260

Query: 218  RNHPIAIKRNAWKNRGLLFSD-------LGVYIRSVKRDESA-----------TNNVLH- 258
                I ++    KNR ++ +D         V   S +R   +            +NVL  
Sbjct: 261  ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSE 316

Query: 259  ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIF 303
                V    A  + + ++ + L+  +  +++E            GI+TQ  +  + G   
Sbjct: 317  DIPIVILLKAMGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQQQALDWIGARI 376

Query: 304  K----EKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQ 354
            K    +   Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++     
Sbjct: 377  KINRKQSPSYRRTHVQEAVE----AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKN 432

Query: 355  GMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSI 406
                +D  D +  + +   G L    +  L KK     K     VL + +   AF A S+
Sbjct: 433  DASLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAYSV 492

Query: 407  ESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
             +  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F+
Sbjct: 493  ITMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHV---LSRLSYIAALGMMTRISSQFE 549

Query: 462  EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI 514
            + R  S PR L+   +G +CP  TP+G  CGL      + H+TTN    E  P      +
Sbjct: 550  KTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTN---DEEGP------V 600

Query: 515  PSVLVSLGMLPLTPVIQSIPEQAL------MVMLDG------RIVGYILDQIATSLVPKL 562
             +++  LG       IQ++  + L       + ++G      R   Y LD        +L
Sbjct: 601  RNLIFMLG----AEDIQTVGGKELYGPGCYTISINGTPTALTRRPKYFLDAFR-----RL 651

Query: 563  RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------- 609
            R +  + E +      +Y+   ++       +++ T  GR+ RP++              
Sbjct: 652  RRMGRISEFVS-----IYINHHQRA------VHVATDDGRICRPLIVVENGKSRVNAQHL 700

Query: 610  -------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
                         LA G +E++   E+    I I  K+     TTH E+     L  +A 
Sbjct: 701  EKLRNGTMQFDDFLAQGLVEYLDVNEENDSLISIYEKDITE-TTTHLEIEPFTVLGAVAG 759

Query: 657  LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
            LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    +    
Sbjct: 760  LIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKY 819

Query: 717  DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            D  P G NAIVAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S  N  GT+ 
Sbjct: 820  DQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSN--GTK- 876

Query: 777  MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYV 835
                                         D+     Y    P  K AL   L  DGL  V
Sbjct: 877  -----------------------------DRLSGPTYENDAPIRKHAL---LESDGLAAV 904

Query: 836  GAKLNERD----------PMYSYWKESE-NRYVT-----CRYSGKEEMCVEVVRMSSGFT 879
            G ++N  +           M S +  S+  R V+       Y   +   ++ V +S    
Sbjct: 905  GEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVMVSVTEN 964

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            E   V      +  R  R P VGDKF+SR GQKG+  +     D+PFTD+G+ PDI+ NP
Sbjct: 965  ENQLVK-----VLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNP 1019

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 1020 HGFPSRMTVG 1029



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1063 ILIDNGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1122

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1123 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1165

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1166 DVCEQCGFMGY 1176


>gi|395507733|ref|XP_003758175.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Sarcophilus
           harrisii]
          Length = 529

 Score =  232 bits (592), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/395 (34%), Positives = 201/395 (50%), Gaps = 38/395 (9%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LT+ ++G P ++Q   L  L   HI SF++ + EGL  AV+ I P+EF 
Sbjct: 8   RNLPSGPSLKHLTEPSYGAPREQQLPALQELTRAHIESFNYAMREGLSHAVQAIPPLEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   IV A +S P VP G +     K YP E R  RS Y G     ++WS +G  
Sbjct: 68  FKDERITFAIVDAVVSPPMVPKGSICKEL-KVYPAECRGRRSTYRGKLTADISWSVNGIP 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G +PIM+KSK C+L NL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQSLGYIPIMVKSKLCNLNNLPPKALIEHHEEAEEMGGYFIINGIEKIIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM-- 275
           RN PIA+ R  WK RG  ++  G+ +  V+ + +A N  LH++ NGS    F + K +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTHYGISMHCVRDEHTAINMNLHYLENGSVMVNFIYHKELFF 246

Query: 276 ----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFGQ 301
                                             C+  M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFVLKALVGFSDYQIFQELIKGREENSFFRNCVSQMLRIVMEEGCLTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
            F+ KL     + NE +  +++L  C+  HL    +KF  L  MT KLF   +     ++
Sbjct: 307 RFRVKLTLPDWYSNE-QAAEFLLNQCVCIHLKSNEEKFYVLCLMTRKLFTFAKEECMEEN 365

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESD 396
            DS+M QE++T G L L  LK+E   T  ++ E+ 
Sbjct: 366 PDSLMNQEVLTPGRLILMFLKEEDDETYGIISETS 400


>gi|322710723|gb|EFZ02297.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
           anisopliae ARSEF 23]
          Length = 1157

 Score =  232 bits (592), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 258/968 (26%), Positives = 407/968 (42%), Gaps = 141/968 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++F +++ +   V     I  ++      L      +  P+           +  P
Sbjct: 48  HIDSYNFFVEQEIKDIVRANRTIRSDV-DSNFWLEFTDIRVDRPRRQDHNDAKSRTEVTP 106

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     Y+ P  V +A+  D +        +GR+P+MLKS RC L     AQ+    
Sbjct: 107 MECRLRDMTYAAPIVVDIAYIRDKQRIIRRNVPLGRMPVMLKSSRCRLSGANNAQMEAMN 166

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPI--AIKRNAWKNRGLLFS----DLGVYIRS 245
           E P + GGYF++ G EK++ +     +N  I  A ++N   +  +  S        Y+ +
Sbjct: 167 ECPLDPGGYFVINGTEKVILIQEQLSKNRVIVEADEKNNIISASVTSSTHERKSKTYV-T 225

Query: 246 VKRDESA-TNNVL----HFVTNGSARFMFSHRKSMCLLGMMQSLHEE------------G 288
           +K+D    T+NVL      V    A    S  + M L+      +++            G
Sbjct: 226 LKKDRIVMTHNVLVEGIPIVIILKALGGLSDYEIMQLVAGSDGRYQDEFVINFDEATRAG 285

Query: 289 IHTQHDSKVFFGQIFK---EKLQY--DLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
           + TQH +  + G   K    K  +   +R  N  E  D  L N I+ H+     D++ K 
Sbjct: 286 VFTQHQALEYIGARVKMGSRKAMFGPQVRRNNVEEGLD-ALANLIIAHVPIEGLDFYPKA 344

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLKKEKSGTSAV 391
           + ++ MT ++    Q    +D  D +  + +   G         L+ + + + K      
Sbjct: 345 IYVAMMTRRVLMASQDSKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKF 404

Query: 392 LKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMAENI 442
           LK+++      A  + S   N     N+  G N  +Q          M  +G   +   +
Sbjct: 405 LKKNNRAVPLDAVHMISNHAN-----NIGMGINRAIQTGNWSVKRFNMNRAG---VTHVL 456

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L    
Sbjct: 457 SRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMT 516

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSL 558
            I+  +    + +    L   G+ P+      +   E + ++ ++G    + L +     
Sbjct: 517 HITTNVDEAPVKRWIFTL-DTGVEPIRNFSGAEMHREGSWVIHVNG--TPFALTRYPKRF 573

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN------ 609
             + R ++  G   P     V +         +  +++ T  GR+ RP   V N      
Sbjct: 574 ASRFRTMRRRGWISP----FVSINLNSH----FNAVHIATDEGRICRPYIIVKNGKQKLR 625

Query: 610 -----------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDFL 651
                            L  G +E++   E+   D  IT+ E      TTH E+     L
Sbjct: 626 HEHLKLLHLGKVTFDDFLTKGIVEYLDVNEE--QDALITLYENQITQSTTHLEIEPFTLL 683

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPF-----F 706
             +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P       
Sbjct: 684 GAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTI 743

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           + VHYD L     P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+
Sbjct: 744 QLVHYDKL-----PAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQ 798

Query: 767 SGYNYYGTETM---YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
             Y     E +    + V+G   + +     V Y+ L     D   T  Y  R  + + +
Sbjct: 799 K-YPNGRRERIGDPVNQVNGGTTRRE-----VKYEALD---DDGLATVGY--RVKSGEVM 847

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
             K  P  L   G  L +R P       SE R     Y   +   ++ V +S   TE  +
Sbjct: 848 VKKETPLDLTTTGIGL-DRGP-------SEYRDSAISYRIPDPAYIDKVMISQ--TEKDT 897

Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
                  +  R  R P +GDKF+SR GQKG+  +    ED+PF D+GL PDI+ NPHGFP
Sbjct: 898 T---VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADNGLCPDIIMNPHGFP 954

Query: 944 SRMTIGFL 951
           SRMT+G L
Sbjct: 955 SRMTVGKL 962



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 19/131 (14%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L+ G+++ G +   SG+ G  ++A IF G ++YQRL+HMV DK  ++    R    +   
Sbjct: 998  LDYGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPT 1057

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS-GFTEGGS 883
            +    DG + +G    ERD + +Y              G  ++ +E + +SS G T    
Sbjct: 1058 EGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMLSSDGVTL--D 1099

Query: 884  VTPNCAYIGYR 894
            +   C   GY+
Sbjct: 1100 ICQQCGLFGYK 1110


>gi|405953099|gb|EKC20822.1| DNA-directed RNA polymerase III subunit RPC2 [Crassostrea gigas]
          Length = 1060

 Score =  232 bits (591), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 255/989 (25%), Positives = 409/989 (41%), Gaps = 198/989 (20%)

Query: 34  MILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLG--APHIASFDFMLD-------EGL 84
           M +++  L+AP +K + +K    P      FL   G    HI SF+F ++       +  
Sbjct: 8   MRMDKEKLAAP-IKTIEEKWKLLPA-----FLKVKGLVKQHIDSFNFFINVEIKNIMKAN 61

Query: 85  DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGP 144
           D  + D  P     Y K L + +    + E      P+        P E R     YS P
Sbjct: 62  DKILSDADP---NFYMKYLNIYVGMPDVEEGFNITKPIS-------PHECRLRDMTYSAP 111

Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
             V + ++   +        +GR+PIML+S  C L   +PA++ +  E P + GGYFI  
Sbjct: 112 ITVDIEYTRGNQRIVRNNLPIGRMPIMLRSSNCVLNGKSPAEMAKLNECPMDPGGYFITR 171

Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLH------ 258
           G EK+            I I+    KNR ++ +D G   RS+   E +  +  H      
Sbjct: 172 GTEKV------------ILIQEQLSKNRMIVDTDTGRN-RSI---ECSVTSSTHERKSKT 215

Query: 259 FVTNGSARFMFSHR------------KSM---CLLGMMQSL-HEEGIHTQ--------HD 294
           +V+    +F   H             K+M   C   ++Q +  EE I T         H 
Sbjct: 216 YVSTKHEKFYLRHNTFTEDIPVAIAFKAMGMECDQEIVQMIGSEEEILTSVAPCLEECHR 275

Query: 295 SKV--FFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-WDKFLCLSHMTCKLFH 351
           ++   + GQ  +++  +      +V+     L + +L H+    W+  L  +++   +  
Sbjct: 276 AQALKYIGQRVRQRRVWGGSKKTKVDEAREALHDIVLAHVPVVEWNFKLKAAYLALMVRR 335

Query: 352 VVQG---MVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLK---------ES 395
           V+      V+ D  D    + +   G L    +  L KK  S    +           + 
Sbjct: 336 VILAKGEQVKGDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKRIADMTIPKPRAAQF 395

Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
           DI    R   I + + N ++TGN S  +      M+ +G   + + ++R+ ++S    + 
Sbjct: 396 DIIKHMRQDQITNGLVNAISTGNWSIKRFK----MERAG---VTQVLSRLSFISALGMMT 448

Query: 456 RGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP 515
           R              + + A G +            L+ H+TT+           + + P
Sbjct: 449 R--------------ISSQACGLV--------KNLALMTHITTD-----------MEEDP 475

Query: 516 SVLVSLGM----LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK 571
            + ++  M    + L    +    +  +V L+G I+G I D     LV   R+++  G  
Sbjct: 476 IIRLAFNMGVEDIQLLSGEEMTSSRVYLVFLNGNILGVIRDH--KKLVRTFRLMRRSG-- 531

Query: 572 IPKSLEIVYLKRP----EKGMGLYPGLYL--FTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
                   Y+  P    +KG  L    ++   T   R       L  G +E++   E+  
Sbjct: 532 --------YISEPYIIVQKGQPLVKQRHIEELTQGFRSFDDF--LKEGLVEYLDVNEE-- 579

Query: 626 MDICITMKEAYPGIT---THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
            D  I++ E+  GIT   TH E+     L   A LIP P  NQSPRN YQC MGKQ MGT
Sbjct: 580 NDCMISLYES--GITRETTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 637

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
              N R +    +Y L  P +P  +    + +  D  P G NA VAV+S++GYD+EDA++
Sbjct: 638 IGYNQRNRIDTLMYLLCYPQAPLVKSKTIELIHFDKLPAGQNATVAVMSFSGYDIEDALV 697

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           LNK+S +RGF    +++     L+   N    + M   VD S           H    +H
Sbjct: 698 LNKASLDRGFGRCLVYRKQACTLKRYTNQSFDKVMGPMVDAS----------THKPIWKH 747

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
                                 + L  DG+   G ++  R  + + W  +       +Y 
Sbjct: 748 ----------------------EALDSDGICSPGERMENRQVLVNKWMPTVTMNPIQQYK 785

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAE 922
           G E   +E V +SS   E   +      I  R  R P +GDKF+SR GQKG+C +  P E
Sbjct: 786 GAEACYIEKVLISSNPEEAFLIK-----ILQRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 840

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PFTD G+ PDI+ NPHG+PSRMT+G L
Sbjct: 841 DMPFTDLGICPDIIMNPHGYPSRMTVGKL 869



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           ++ G+NY G + + SG+ G  ++A IFFG ++YQ+L+HMV DK   +    R    +   
Sbjct: 903 VKHGFNYLGKDFVTSGITGEPLEAYIFFGPIYYQKLKHMVLDKMHARAKGPRAVLTRQPT 962

Query: 825 DKLGPDGLVYVGAKLNERDPMYSY 848
           +    DG + +G    ERD +  Y
Sbjct: 963 EGRSRDGGLRLGEM--ERDCLIGY 984


>gi|449544049|gb|EMD35023.1| hypothetical protein CERSUDRAFT_116535 [Ceriporiopsis subvermispora
           B]
          Length = 1145

 Score =  232 bits (591), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 235/904 (25%), Positives = 369/904 (40%), Gaps = 142/904 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  VT+ ++            +GR+PIML+S +C L   T AQL   
Sbjct: 109 PHECRLRDTTYSAPILVTIQYTRGKTVVRRQNVNIGRIPIMLRSNKCVLTGRTEAQLARM 168

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYFIV G EK++         R+++       I          G L S    
Sbjct: 169 TECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEIDPTKGIVQASCTSSTHGGLKSK--T 226

Query: 242 YIRSVKRDESATNNVLH----FVTNGSARFMFSHRKSMCLLG------------MMQSLH 285
           Y+ + K      +N +H     V    A  + S ++ + L               ++   
Sbjct: 227 YVATKKGKIYLRHNSIHEDVPIVIALKALGIQSDKEILLLTAGNHEAYKSAFSPNLEEAA 286

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
           + G++T+H +  + G   K   +         E     L   +L H+     D+  K + 
Sbjct: 287 KLGVYTRHQALEYIGSRVKVNRKVVGPRRPAWEEALEALATIVLAHVPVHGLDFRSKAIF 346

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVL 392
           ++ MT ++   +     +D  D +  + +   G L L LL ++         KS    VL
Sbjct: 347 VATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQL-LALLFEDLFKTFNANLKSAIDKVL 405

Query: 393 K------ESDIYAA--FRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
           K      E D +    F+   I S     ++TGN S  +      M  +G   +   ++R
Sbjct: 406 KKPSRTSEFDAFNTMQFQGDHITSGFVRAISTGNWSLKRFK----MDRAG---VTHVLSR 458

Query: 445 MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHL 496
           + ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL      + H+
Sbjct: 459 LSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 518

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIAT 556
           TT+ +    I    +  +  + V+ G     P          +V ++G I+G  L +   
Sbjct: 519 TTDVEEEPIIRIAFMLGVEDISVATGTEIYGP-------NTFVVNVNGTIIG--LTRYPA 569

Query: 557 SLVPKLRMLKIVGE-----------------------KIPKSLEIVYLKRP----EKGMG 589
             V   R L+  G                        +I + + IV   RP    +  + 
Sbjct: 570 RFVTNFRKLRRAGRFSEFVSAYINHHHRTVLIASDGGRICRPMIIVENGRPRVTSDHTLQ 629

Query: 590 LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
           L  GL  F            L  G +E++   E+    I +  ++  P  TTH E+    
Sbjct: 630 LKKGLLTFDD---------FLRKGLVEYLDVNEENDSYIALYERDIVPA-TTHLEIEPFT 679

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY    P  P  +  
Sbjct: 680 LLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTK 739

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + +  D  P G NA VAV+SY+GYD+EDA+I NK+S +RG+    + +     +    
Sbjct: 740 TIELIGYDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRCQVLRKNTTLIRKYP 799

Query: 770 NYYGT-ETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF--GRDPANKALEDK 826
           N  GT + +         Q Q  + ++    L   V ++    D +   + P N      
Sbjct: 800 N--GTFDRLADAPADDNGQIQKKYDIIQLDGLAG-VGERVDPGDVYINKQTPTNANDNSF 856

Query: 827 LGPDGLV-YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
            G    V Y  A +  + P+  Y  +     V    +  ++  ++V+             
Sbjct: 857 TGQAATVPYKNAPMTYKSPVAGYIDK-----VMITDTENDQTLIKVL------------- 898

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                   R  R P +GDKF+SR GQKG+C +    ED+PF D G+VPD + NPHGFPSR
Sbjct: 899 -------IRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSR 951

Query: 946 MTIG 949
           MT+G
Sbjct: 952 MTVG 955



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I +E+G++Y G + + SG+ G  M+A ++FG ++YQ+
Sbjct: 966  GVLAGKLQYGTAFGGSKVEDMSRILIENGFSYSGKDMLTSGITGEPMEAYVYFGPIYYQK 1025

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            L+HMV DK   +    R    +   +    +G + +G    ERD +  Y           
Sbjct: 1026 LKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEM--ERDCLIGY----------- 1072

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
               G  ++ +E + +SS   E  +    C  +GY
Sbjct: 1073 ---GATQLLLERLMISSDKFEVNACE-ECGLLGY 1102


>gi|340720183|ref|XP_003398521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Bombus terrestris]
          Length = 1128

 Score =  232 bits (591), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 233/915 (25%), Positives = 380/915 (41%), Gaps = 165/915 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + +    +        +GR+PIML+S  C L   +  +L + 
Sbjct: 95  PHECRLRDLNYSAPITVDIEYIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELSKM 154

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD-LGVYIRSVKRD 249
            E P + GGYFIV G EK+            I I+    +NR +L  D  G  + S    
Sbjct: 155 NECPHDPGGYFIVNGQEKV------------ILIQEQMLRNRIILEEDSKGCIVASCNSS 202

Query: 250 ESATNNVLHFVTNGSARFM--------------------FSHRKSMCLLGM--------- 280
                   + V  G   +M                     S ++ M L+G          
Sbjct: 203 THERKTKTNIVGKGGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFA 262

Query: 281 --MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI--LPHLD-DY 335
             ++  H   +  Q+ +  F     K+K    ++     E+ D + TN +  +P +D ++
Sbjct: 263 PTLEECHVLNVFAQNQALRFLSNKRKQKRYSVIKSSVTDEMKDILATNILSHVPVIDFNF 322

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-------- 383
             K   ++ M  K+         +D  D    + +   GSL    +  L K+        
Sbjct: 323 KMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQI 382

Query: 384 -EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
            +K+       + DI    R   I + +   +++GN +  +      M+  G   + + +
Sbjct: 383 ADKNIPKIKAAQFDIVKHMRQDQITNGLAFAISSGNWTIKRFK----MERHG---VTQVL 435

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L    
Sbjct: 436 SRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMT 495

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSL 558
            I+  I  + + ++     +LG+  +  +   +   ++  MV L+G I+G + +     L
Sbjct: 496 HITTEIDEEPIVRLA---FNLGVENVNILGGEEINNKKVYMVFLNGNILGIVKN--YQRL 550

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN---- 614
           V   R+L+  G  +      ++ +   +       + + +  GR+ RP + +  GN    
Sbjct: 551 VNVFRLLRRKG--LINGFVSIHTQHQHR------CIQISSDGGRLCRPYIIVQNGNPLIQ 602

Query: 615 ----------------------IEWIGTFEQVFMDICITMKEAYPG-ITTHRELSKTDFL 651
                                 IE++   E+   D  I   E++    TTH E+     L
Sbjct: 603 ENHIKLLEQGIRSFEDFLQEGLIEYLDVNEE--NDSSIAFNESHINEKTTHLEIEPFTLL 660

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A L+P P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P +P  +    
Sbjct: 661 GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTI 720

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + ++ D  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF    I+++    L+     
Sbjct: 721 ELINFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGFGRCLIYRNAKCTLKR---- 776

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
           Y  +T Y  + G ++                         D   + P  K   D +  DG
Sbjct: 777 YANQT-YDRIMGPLI-------------------------DSNTKKPVWK--HDIIDSDG 808

Query: 832 LVYVGAKLNERDPMY---------------SYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           +   G  +  R  M                +   ++E + V   + G     VE V +SS
Sbjct: 809 IAAPGEMVENRKVMVNKSSPAANIGPVNAGNVQTQTEYKDVPVVFKGPVPAYVEKVMISS 868

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              +   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++
Sbjct: 869 NAEDAFLIK-----LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDYGICPDMI 923

Query: 937 FNPHGFPSRMTIGFL 951
            NPHGFPSRMT+G L
Sbjct: 924 MNPHGFPSRMTVGKL 938



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ GYNY G +  YSG+ G  +QA I+ G V+YQ+L+HMV DK   +    R    +   
Sbjct: 972  VKHGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARSRGPRAVLTRQPT 1031

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    +G + +G    ERD +  Y
Sbjct: 1032 EGRAKEGGLRLGEM--ERDCLIGY 1053


>gi|358396944|gb|EHK46319.1| hypothetical protein TRIATDRAFT_132468 [Trichoderma atroviride IMI
           206040]
          Length = 1157

 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 250/954 (26%), Positives = 407/954 (42%), Gaps = 113/954 (11%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++F ++  +   V     I  ++      L      +  P+          N+  P
Sbjct: 48  HIDSYNFFVEHEIKEIVRANRTIRSDV-DSNFWLEFTDIRVDRPRRLDYNDSKSRNEVTP 106

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     Y+ P  V +A+  D +        +GR+P+MLKS +C L     +++ +  
Sbjct: 107 MECRLRDMTYAAPIFVDIAYIRDKQKIVRKNVPLGRMPVMLKSCKCRLSGANNSEMEKMN 166

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPI--AIKRNAWKNRGLLFS----DLGVYIRS 245
           E P + GGYFIV G EK++ +     +N  I  A ++N   +  +  S        Y+ +
Sbjct: 167 ECPLDPGGYFIVNGTEKVILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYV-T 225

Query: 246 VKRDESA-TNNVL----HFVTNGSARFMFSHRKSMCLLGMMQSLHEE------------G 288
           +K+D+   T+N+L      V    A    S  + M L+      +++            G
Sbjct: 226 LKKDKIVLTHNILVEGIPIVIILKALGGLSDYEIMQLVAGSDGRYQDEFLVNFDEAAKAG 285

Query: 289 IHTQHDSKVFFGQIFK---EKLQYDLR-HLNEVEICDYMLTNCILPHLD----DYWDKFL 340
           I TQH +  + G   K    + Q+  +   N VE     L N I+ H+     D++ K +
Sbjct: 286 IFTQHQALEYIGSRVKMGSRRGQFGAQARRNNVEEGLDALANLIIAHVPIEGLDFYPKAI 345

Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLKKEKSGTSAVL 392
            ++ MT ++    Q    +D  D +  + +   G         L+ + + + K      L
Sbjct: 346 YVAMMTRRVLMASQDNKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKFL 405

Query: 393 KESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYM 448
           K+++      A  + S   N +  G    + +G  S  +  M  +G   +   ++R+ Y+
Sbjct: 406 KKNNRAVPLDAVHMISNHANSIGLGINRAIQSGNWSVKRFNMNRAG---VTHVLSRLSYI 462

Query: 449 SHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
           S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +
Sbjct: 463 SALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNV 522

Query: 507 PSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
               + +    L  +G+ P+      +   E + ++ ++G    + L +       + R 
Sbjct: 523 EEDPVKRWIFTL-DVGVEPIRNFSGAEMHREGSYIIHVNG--TPFALTRYPKRFTHRFRT 579

Query: 565 LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN------------ 609
           ++  G   P     V +         +  +++ T  GR+ RP   V N            
Sbjct: 580 MRRRGWISP----FVGIHTNSH----FNAIHIATDEGRICRPYIIVKNGKQKLKPEHLRL 631

Query: 610 -----------LAAGNIEWIGTFEQVFMDICITMKEAYPGI-TTHRELSKTDFLSNLANL 657
                      L  G +E++   E+   D  IT+ E    + TTH E+     L  +A L
Sbjct: 632 LQMGKVTFDDFLTKGIVEYLDVNEE--NDALITIYEDQVTMSTTHLEIEPFTLLGAVAGL 689

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           IP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P         +  D
Sbjct: 690 IPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYD 749

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+  Y     E +
Sbjct: 750 KLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQK-YPNGRRERV 808

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA 837
              V+      ++  GV+   + +H   D         R  + +A+  K  P  +   G 
Sbjct: 809 GDPVN------EVENGVMRRIK-KHEALDADGLAIVGQRIHSGEAMVKKETPLDMTTTGI 861

Query: 838 KLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQR 897
            L +R P       SE R     Y   +   ++ V +S   TE  +       +  R  R
Sbjct: 862 GL-DRGP-------SEYRDTAVSYRIADPAYIDKVMISQ--TEKDTT---VIKVQTRQTR 908

Query: 898 NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            P +GDKF+SR GQKG+  +    ED+PF DSGL PDI+ NPHGFPSRMT+G L
Sbjct: 909 RPELGDKFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKL 962



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 23/151 (15%)

Query: 750  RGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            + +  G  F+S  ++      +++G+++ G +   SG+ G  ++A IF G ++YQRL+HM
Sbjct: 977  KDYGFGDAFRSHPVQQVSEVLVDNGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHM 1036

Query: 804  VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
            V DK  ++    R    +   +    DG + +G    ERD + +Y              G
Sbjct: 1037 VQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------G 1080

Query: 864  KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
              ++ +E + +SS  T    +   C   GY+
Sbjct: 1081 ASQLLLERLMLSSDGTM-IDICQQCGLFGYK 1110


>gi|449447799|ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Cucumis sativus]
          Length = 1158

 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 259/985 (26%), Positives = 412/985 (41%), Gaps = 172/985 (17%)

Query: 63  EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAG 120
           EFL   G    H+ SF++ ++  +   V+    IE      ++ L  +   I EP V   
Sbjct: 47  EFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESST-DPSIYLRFLDVRIGEPSVTVN 105

Query: 121 PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE----VGRVPIMLKSKR 176
            V    N   P   R +   Y+ P  V + +  +  A     ++    +GR+PIML+S+ 
Sbjct: 106 AVSETIN---PHMCRLSDLTYAAPILVDIEYIEESHAQKAPREKKDVVIGRMPIMLRSRC 162

Query: 177 CHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLINNRR----NHPIA 223
           C L     A+L   GE P + GGYFI+ G EK+V         R++I+  +    N  + 
Sbjct: 163 CVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVLIQEQLSKNRIIIDTDKKGNINASVT 222

Query: 224 IKRNAWKNRGLL-------------FSDLGVYIRSVKR--DESATNNVLHFVTNGSARFM 268
               A K++ ++             F+   + I  V +     +   V+  V        
Sbjct: 223 SSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMVVLKAMGMESIQEVVQMVGRDP---- 278

Query: 269 FSHRKSMCLLGMMQSLHEEGIHTQH------DSKVFFGQIFKEKLQYDLRHLNEVEICDY 322
              R    LL  ++   +E I+TQ       ++KV   Q      + + R L  +   D 
Sbjct: 279 ---RYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFASAPPEKEGRALGILR--DV 333

Query: 323 MLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
            L N  + + +++  K + ++ M  ++   +     +D +D +  + +   G L + LL 
Sbjct: 334 FLANVPV-YKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGNKRLELSGQL-ISLLF 391

Query: 383 KE--KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQ 431
           ++  K+  S V K  D      + S     +  L +  +S G   TL           M 
Sbjct: 392 EDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTLSTGNWDVKRFRMH 451

Query: 432 ASGFVIMAENINRMRYMSHFRAVHRGS-YFQEMRS-SEPRQLRTDAWGFICPVHTPDGTP 489
             G   M++ + R+ ++S    V R S  F++ R  S PR L+   WG +CP  TP+G  
Sbjct: 452 RKG---MSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEA 508

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIV 547
           CGL+ +L     ++     +    + S+   LG+  L L    +     + +V+ +GRI+
Sbjct: 509 CGLVKNLALMTHVTT---DQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIFNGRIL 565

Query: 548 GYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           G    +        +RML+  G    K  E V +   EK       +Y+ +  GR+ RP+
Sbjct: 566 GK--HRRPQYFATGMRMLRRAG----KIGEFVSVFVNEKQH----CVYIASDGGRVCRPL 615

Query: 608 MN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
           +                           L  G IE++   E+    I +   EA P  TT
Sbjct: 616 VIADKGVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPE-TT 674

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+     L  +A LIP P  NQSPRN YQC MGKQ MG    N   +    LY L  P
Sbjct: 675 HIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYP 734

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P       + +  D    G NA VAV+SY+GYD+EDA+++NKSS +RGF    +FK  
Sbjct: 735 QRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKK- 793

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW----QTKDYFGRD 817
                           YS V+               Q+  +  +D+     + +D+ G  
Sbjct: 794 ----------------YSSVN---------------QKYENNTADRIVRPNRNEDFTGN- 821

Query: 818 PANKALEDKLGPDGLVYVGAKL-------NERDPMYSYWKE----SENRYVTCR--YSGK 864
              + L+D    DGL   G  +       N++ P+           +N Y  CR  + G 
Sbjct: 822 --MQILDD----DGLAAPGEIIRPNDIYVNKQSPIIMKGSPLPGIPDNAYRPCRQIFKGS 875

Query: 865 EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
           E     V R++    +   +   C     R  R P +GDKF+SR GQKG+C      ED 
Sbjct: 876 EGEPTVVDRVALSTDKNDCL---CIKFLIRQTRRPELGDKFSSRHGQKGVCGTIVQQEDF 932

Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIG 949
           PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 933 PFSERGICPDLIMNPHGFPSRMTVG 957



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G  +QA IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 998  IKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1057

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    +G + VG    ERD + +Y
Sbjct: 1058 EGRARNGGLRVGEM--ERDCLIAY 1079


>gi|342879891|gb|EGU81124.1| hypothetical protein FOXB_08398 [Fusarium oxysporum Fo5176]
          Length = 1150

 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 245/917 (26%), Positives = 375/917 (40%), Gaps = 156/917 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  V + +  D +        +GR+P+MLKS +C L      Q+ E 
Sbjct: 91  PMECRLRDMTYAAPIFVDIQYIRDKQRIVRKNVPLGRMPVMLKSSKCRLAGANNTQMEEM 150

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E P + GGYFI+GG EK+            I I+    KNR ++ +D    I S     
Sbjct: 151 NECPLDPGGYFIIGGTEKV------------ILIQEQLSKNRIIVEADEKNNIISASVTS 198

Query: 251 SA-TNNVLHFVTNGSARFMFSHR------------KSMCLLGMMQSLH------------ 285
           S        +VT    R + +H             K++  L  M+ +             
Sbjct: 199 STHERKSKTYVTLKKDRILLTHNVLVEGIPIVIILKALGGLSDMEIMQLVAGSDGRYQDE 258

Query: 286 ---------EEGIHTQHDSKVFFGQIFKEKLQY-----DLRHLNEVEICDYMLTNCILPH 331
                    + G+ TQH +  + G   K   +       +R  N VE     L N ++ H
Sbjct: 259 FLVNFDEATKAGVFTQHQALEYIGAKVKMGSRRGTFGPQVRR-NHVEEGLDALANLVIAH 317

Query: 332 LD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--K 385
           +     D++ K + ++ MT ++         +D  D +  + +   G L L LL ++  K
Sbjct: 318 VPIEGLDFYPKAIYVAQMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQL-LSLLFEDLFK 376

Query: 386 SGTSAVLKESDIY--AAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASG 434
             TS V    D +     RA  +++         N+  G N  +Q          M  +G
Sbjct: 377 QFTSGVKMSIDKFLKKNNRAVPLDAVHMISNHANNIGYGINRAIQTGNWTVKRFNMNRAG 436

Query: 435 FVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL 492
              +   ++R+ Y++    + R  S F++ R  S PR L+   WG +C   TP+G  CGL
Sbjct: 437 ---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGL 493

Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYI 550
           + +L     I+  +  + + +    L   G+ P+      +   E + ++ ++G    + 
Sbjct: 494 VKNLALMTHITTNVDEEPVKRWIFTL-DAGVEPIRNFSGAEMHREGSYIIHING--TPFA 550

Query: 551 LDQIATSLVPKLRMLK-------IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           L +       K R ++        VG  I      V++   E G    P + +  G  ++
Sbjct: 551 LTRYPKRFAQKFRTMRRRGWISPFVGININTHFNAVHIATDE-GRICRPYIIVKNGKQKL 609

Query: 604 ----LRPVMN--------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDF 650
               LR +          L  G +E++   E+   D  IT+ E      TTH E+     
Sbjct: 610 KPEHLRLLQMGKATFDDFLNRGIVEYLDVNEE--NDALITIYEDQVTQSTTHLEIEPFTV 667

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P      
Sbjct: 668 LGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKT 727

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
              +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+   N
Sbjct: 728 IQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYPN 787

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                                         R  + D     D  G+     A  + L  D
Sbjct: 788 GR----------------------------RERIGDPENEGD--GKIKRRIAKHEALDDD 817

Query: 831 GLVYVGAKLNERDPMYSYWKES----------------ENRYVTCRYSGKEEMCVEVVRM 874
           GL  VG K+N  + M    KE+                E R  +  Y   +   ++ V +
Sbjct: 818 GLAIVGYKVNSGEAMVK--KETPLDQTSTGIGLDRGPAEFRDSSVSYRIADPAYIDKVMI 875

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
           S   TE  +       +  R  R P +GDKF+SR GQKG+  +    EDLPF+DSGL PD
Sbjct: 876 SQ--TEKDTT---VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDSGLSPD 930

Query: 935 IVFNPHGFPSRMTIGFL 951
           I+ NPHGFPSRMT+G L
Sbjct: 931 IIMNPHGFPSRMTVGKL 947



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 23/149 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            +  G  F+S  +E      ++ G+++ G +   SG+ G  ++A +F G ++YQRL+HMV 
Sbjct: 964  YGFGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLKHMVQ 1023

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1024 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GAS 1067

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            ++ +E + +SS  TE   +   C   GY+
Sbjct: 1068 QLLLERLMISSDGTE-IDICQQCGLFGYK 1095


>gi|449300576|gb|EMC96588.1| hypothetical protein BAUCODRAFT_33950 [Baudoinia compniacensis UAMH
            10762]
          Length = 1214

 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 240/922 (26%), Positives = 381/922 (41%), Gaps = 174/922 (18%)

Query: 125  HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
            H +   P E R     Y+ P  V   WS          K +GR+P+ML+S +C L   + 
Sbjct: 176  HESPVTPNECRLRDMTYAAPIFVDYVWSSSTGLRRKTNKMIGRMPMMLRSSKCVLSGRSE 235

Query: 185  AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
            A +    E   + GGYFIV G EK+            I ++    KNR ++ S  G+   
Sbjct: 236  ADMGMLNECSIDPGGYFIVRGQEKV------------ILVQEQLSKNRVIVESAKGIIQA 283

Query: 245  SVKRDESATNNVLHFVTNGSARFMFSHRK-------SMCLLGM-MQSLHE---------- 286
            SV    +A      +V       +  H         ++ L  M +QS HE          
Sbjct: 284  SVT-SHTANVKTKTYVLLKKGLLVLKHNSLTEDIPVAIVLRAMGVQSDHEILLLAAGNDA 342

Query: 287  ---------------EGIHTQHDSKVFFGQIFKEK----LQYDLRHLNEVEICDYMLTNC 327
                           EG+ TQ  +  +    FK               + +  D  L   
Sbjct: 343  TYQDEFAPNLEQAALEGVFTQEQALDYIASRFKPDRFPTFAGKASKSPKQQALD-KLAGT 401

Query: 328  ILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------S 375
            I+PH++    ++  K L ++ MT ++   +     +D  D +  + +   G         
Sbjct: 402  IIPHVEVEGLNFRPKALYIAFMTRRVLMAMHDPKLVDDRDYVGNKRLELAGQMLALLFED 461

Query: 376  LYLQLLKKEKSGTSAVLKESDIYAAF--------RASSIESAMTNFLATGNVSAGKNSTL 427
            L+ ++ K+ K     +LK+ +    F          S I + +   ++TGN +  +    
Sbjct: 462  LFKEVTKQIKLSMDKILKKHNPTQEFDPERLIDLSESRITTGLERAISTGNWALKRFR-- 519

Query: 428  QLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTP 485
              M  +G   +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP
Sbjct: 520  --MDRAGVTHV---LSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTP 574

Query: 486  DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLD 543
            +G  CGL+ +L     I+    S   A I  +  SLG   +T     +     A ++ ++
Sbjct: 575  EGEACGLVKNLALMTHITT---SDDEAPIRRMAFSLGAEDVTSASGTEVYSAGAYIIFVN 631

Query: 544  GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
            G  V   L +     +   R  + +G +I + + I Y+         + G+++ T  GR+
Sbjct: 632  GTPVA--LTRQPKQFLVAFRKFRRMG-RISEFVSI-YINH------HHNGVHIATDEGRI 681

Query: 604  LRPVM--------------------------NLAAGNIEWIGTFEQVFMDICITMKEAYP 637
             RP++                           L+ G +E++   E+   +I +  ++   
Sbjct: 682  CRPLIVVENGKSKVNARFLDSLRKGTMGFDDALSRGIVEYLDVNEENDSNIAV-YEDGIT 740

Query: 638  GITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
              TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY 
Sbjct: 741  QHTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYL 800

Query: 698  LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
            +  P  P       + +  D  P G NAIVAV+SY+GYD+EDA++LNK+S +RGF    +
Sbjct: 801  MVYPQKPMVSTRAIELVKYDKLPAGQNAIVAVMSYSGYDIEDALVLNKASCDRGFGRCQV 860

Query: 758  FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            FK + ++L++    YG                                    T    GRD
Sbjct: 861  FKKINVQLKT----YGN---------------------------------GATDRVTGRD 883

Query: 818  PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK----EEMCVEVV- 872
             AN     KLG DG++  G +L   D  Y   ++   + V+   S +    E M  ++  
Sbjct: 884  DANPK-HVKLGKDGIIEAGMQLAAGD-TYMLKEKPLQQSVSVAASAQIWAPEHMSYKLPD 941

Query: 873  -----RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
                 ++  G TE          I  R  R P VGDKF+SR GQKG+  +     D+PF+
Sbjct: 942  PCYADKVMVGTTESNHT---IFKIQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFS 998

Query: 928  DSGLVPDIVFNPHGFPSRMTIG 949
            DSG+ PDI+ NPHGFPSRMT+G
Sbjct: 999  DSGITPDIIMNPHGFPSRMTVG 1020



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 19/151 (12%)

Query: 745  KSSYERGFAHG-CIFKSMFIEL-ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            K + E G A G    + M  EL   G++Y G + + SG+ G  + A +FFG ++YQ+L+H
Sbjct: 1034 KGTQEYGTAFGGSKVEEMGNELIRQGFSYSGKDCVTSGITGESLPAYVFFGPIYYQKLKH 1093

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK   +    R    +   +     G + +G    ERD + +Y              
Sbjct: 1094 MVQDKMHARSTGPRAILTRQPTEGRSRAGGLRLGEM--ERDCLIAY-------------- 1137

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            G  ++ +E + +SS   E   V   C  +GY
Sbjct: 1138 GASQLLLERLMLSSDAHE-VDVCETCGMMGY 1167


>gi|388858433|emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
           hordei]
          Length = 1169

 Score =  232 bits (591), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 235/958 (24%), Positives = 399/958 (41%), Gaps = 125/958 (13%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+++ +D  L   ++    I  +I  K   L      + EP+   G          P
Sbjct: 66  HIESYNYFVDHDLKNIIKANEKITSDIDPK-FYLKYTDITVGEPRRYDGDA--LQRPITP 122

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     YS    V + ++  GK        +GR+P+ML+S +C L N +  +L +  
Sbjct: 123 QECRLRDITYSAHIFVNIEYTRGGKIIRRKNVAIGRIPVMLRSNKCVLSNKSEKELAKMS 182

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR--- 248
           E P + GGYF+V G EK++ L+      + I ++ +  K           + R  K    
Sbjct: 183 ECPLDPGGYFVVKGTEKVI-LVQEQLSKNRIIVEADTKKGSVSASVTSSTHERKSKSYVL 241

Query: 249 ----DESATNNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------G 288
                    +N LH          A  + + R+ + L+     +++E            G
Sbjct: 242 TKHGKIFLKHNSLHEDIPIAVAFKAMGIQADREILQLVVGHDDIYKELFAINLEEAARLG 301

Query: 289 IHTQHDSKVFFGQIFKEKLQ-YDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLS 343
           I+T+  +  + G   K   +   +R     E  D +L   I+ H+     ++  K + ++
Sbjct: 302 IYTRKQALDYIGARAKASRKPLSMRRPLSEEALD-VLATVIMAHVPVERLNFRPKAIYIA 360

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS----GTSAVLKES 395
            M  ++   +Q   ++D  D +  + +   G L    +  L KK  S        VLK+ 
Sbjct: 361 SMVRRVLVAMQDEKKVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKINIDKVLKKP 420

Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMAENINRMRYMSHF 451
           +    F A +      +++  G V A       L    M+ +G   +   ++R+ Y++  
Sbjct: 421 NRTVEFDAFNQFHFNGDYITAGFVRAISTGNWSLKRFKMERAG---ITHVLSRLSYIAAL 477

Query: 452 RAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
             + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +  +
Sbjct: 478 GMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEE 537

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
            +A++   L    +  LT      P+ + +V L+G ++G  + +     V + R L+  G
Sbjct: 538 PIAKLAFTLGVEDVHLLTGAELYRPD-SYIVYLNGNVLG--VTRFPQRFVMQFRRLRRAG 594

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP-----------------VMNLAA 612
             I + + I            +  +Y+ +  GR+ RP                 +  L A
Sbjct: 595 H-ISEFVSIYTNSH-------HQTVYIASDGGRICRPLIIVDPVTGQPRVTDSHIQQLKA 646

Query: 613 GN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
           G            +E++   E+   +I +  ++  P  TTH E+     L  +A LIP P
Sbjct: 647 GIRCFNDFLHNGLLEYLDVNEENDSNIALYERDIKPRYTTHLEIEPFTILGAVAGLIPYP 706

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
             NQSPR  YQC MGKQ +     N   +    LY +  P  P  +    D +  D  P 
Sbjct: 707 HHNQSPRLTYQCAMGKQAVSAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIDLIGYDKLPA 766

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G NA+VAV+S++GYD+EDA++LNK+S +RGF      K     L    N        + V
Sbjct: 767 GQNAMVAVMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSSTILRKYPNGTHDRLADAPV 826

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF--GRDPANKALEDKL--------GPDG 831
           D S  + Q  + ++    +   V ++ +  D F   + P N                   
Sbjct: 827 DESTGKRQKRYDILEADGIAG-VGERVEQGDVFVNKQTPVNANDNSSAAIMIGASNAAAS 885

Query: 832 LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
           + Y  A L+ + P+  Y     ++ +       + +   ++R +                
Sbjct: 886 VAYKSAPLSYKPPVSGYV----DQVLITDTDSDQTLIKALIRQT---------------- 925

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
                R P +GDKF+SR GQKG+C +    ED+PF+D G+ PDI+ NPHGFPSRMT+G
Sbjct: 926 -----RRPELGDKFSSRHGQKGVCGLIVNQEDMPFSDQGINPDIIMNPHGFPSRMTVG 978



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ GYNY G ET+ SG+ G  ++  ++FG ++YQRL+HMV DK   +    R    + 
Sbjct: 1012 ILVDHGYNYGGKETLTSGITGQPLECYVYFGPIYYQRLKHMVQDKMHARARGPRAVLTRQ 1071

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG + +G    ERD +  Y
Sbjct: 1072 PTEGRSRDGGLRLGEM--ERDCLIGY 1095


>gi|322696543|gb|EFY88334.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
           acridum CQMa 102]
          Length = 1157

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 255/966 (26%), Positives = 406/966 (42%), Gaps = 137/966 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++F +++ +   V     I  ++      L      +  P+          ++  P
Sbjct: 48  HIDSYNFFVEQEIKDIVRANRTIRSDV-DSNFWLEFTDIRVDRPRRQDHNDAKSRSEVTP 106

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     Y+ P  V +A+  D +        +GR+P+MLKS RC L     AQ+    
Sbjct: 107 MECRLRDMTYAAPIVVDIAYIRDKQRIIRRNVPLGRMPVMLKSSRCRLSGANNAQMEAMN 166

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPI--AIKRNAWKNRGLLFS----DLGVYIRS 245
           E P + GGYF++ G EK++ +     +N  I  A ++N   +  +  S        Y+ +
Sbjct: 167 ECPLDPGGYFVINGTEKVILIQEQLSKNRVIVEADEKNNIISASVTSSTHERKSKTYV-T 225

Query: 246 VKRDESA-TNNVL----HFVTNGSARFMFSHRKSMCLLGMMQSLHEE------------G 288
           +K+D    T+NVL      V    A    S  + M L+      +++            G
Sbjct: 226 LKKDRIVMTHNVLVEGIPIVIILKALGGLSDYEIMQLVAGSDGRYQDEFVINFDEATRAG 285

Query: 289 IHTQHDSKVFFGQIFK---EKLQY--DLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
           + TQH +  + G   K    K  +   +R  N  E  D  L N I+ H+     D++ K 
Sbjct: 286 VFTQHQALEYIGARVKMGSRKAMFGPQVRRNNVEEGLD-ALANLIIAHVPIEGLDFYPKA 344

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLKKEKSGTSAV 391
           + ++ MT ++    Q    +D  D +  + +   G         L+ + + + K      
Sbjct: 345 IYVAMMTRRVLMASQDSKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKF 404

Query: 392 LKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMAENI 442
           LK+++      A  + S   N     N+  G N  +Q          M  +G   +   +
Sbjct: 405 LKKNNRAVPLDAVHMISNHAN-----NIGMGINRAIQTGNWSVKRFNMNRAG---VTHVL 456

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L    
Sbjct: 457 SRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMT 516

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSL 558
            I+  +    + +    L   G+ P+      +   E + ++ ++G    + L +     
Sbjct: 517 HITTNVDEAPVKRWIFTL-DTGVEPIRNFSGAEMHREGSWVIHVNG--TPFALTRYPKRF 573

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN------ 609
             + R ++  G   P     V +         +  +++ T  GR+ RP   V N      
Sbjct: 574 ASRFRAMRRRGWISP----FVSINLNSH----FNAVHIATDEGRICRPYIIVKNGKQKLK 625

Query: 610 -----------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDFL 651
                            L  G +E++   E+   D  +T+ E      TTH E+     L
Sbjct: 626 DEHLKLLHLGKVTFDDFLTRGIVEYLDVNEE--QDALVTIYENQITQSTTHLEIEPFTLL 683

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPF-----F 706
             +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P       
Sbjct: 684 GAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTI 743

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           + VHYD L     P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+
Sbjct: 744 QLVHYDKL-----PAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQ 798

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHY-QRLRHMVSDKWQTKDYFGRDPANKALED 825
             Y     E +   V+      Q+  G     ++   +  D   T  Y  R  + + +  
Sbjct: 799 K-YPNGRRERIGDPVN------QVNGGTTRREEKYEALDDDGLATVGY--RVKSGEVMVK 849

Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
           K  P  L   G  L +R P       SE R     Y   +   ++ V +S   TE  +  
Sbjct: 850 KETPLDLTTTGIGL-DRGP-------SEYRDSAISYRIPDPAYIDKVMISQ--TEKDTT- 898

Query: 886 PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                +  R  R P +GDKF+SR GQKG+  +    ED+PF D+GL PDI+ NPHGFPSR
Sbjct: 899 --VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADNGLCPDIIMNPHGFPSR 956

Query: 946 MTIGFL 951
           MT+G L
Sbjct: 957 MTVGKL 962



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 19/131 (14%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L+ G+++ G +   SG+ G  ++A IF G ++YQRL+HMV DK  ++    R    +   
Sbjct: 998  LDYGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPT 1057

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS-GFTEGGS 883
            +    DG + +G    ERD + +Y              G  ++ +E + +SS G T    
Sbjct: 1058 EGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMLSSDGVTL--D 1099

Query: 884  VTPNCAYIGYR 894
            +   C   GY+
Sbjct: 1100 ICQQCGLFGYK 1110


>gi|361131372|gb|EHL03070.1| putative DNA-directed RNA polymerase III subunit RPC2 [Glarea
           lozoyensis 74030]
          Length = 1184

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 234/924 (25%), Positives = 381/924 (41%), Gaps = 165/924 (17%)

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
            N+  P E R     Y+ P  VT  ++   +        +GR+PIMLKS  C L      
Sbjct: 131 LNEITPNECRLRDMTYAAPIRVTFRYTKGKQMTRRSHIPIGRMPIMLKSATCRLAGKNDR 190

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           Q+ +  E   + GGYFIV G EK+            I ++    KNR ++ +D    I S
Sbjct: 191 QMAQMNECALDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVEADPKKGITS 238

Query: 246 VKRDESA-TNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQH----------- 293
                S        +VT    R    H      + ++  L   GI + H           
Sbjct: 239 ASVTSSTHERKSKSYVTMKKDRIWLQHNILTEPVPIVIVLKAMGIQSDHEMMFLVAGEDE 298

Query: 294 DSKVFFGQIFKEKL-------QYDLRHL-------------------NEVEICDYMLTNC 327
           D +  F  +F+E         Q  L +L                   N ++     L N 
Sbjct: 299 DYQDEFAVMFEEAAKAGVFSQQQALEYLGARVKMGSKPRVGGAPPRRNHIQDALEALANI 358

Query: 328 ILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQ 379
           I+ H+     D+  K L +  M  ++   V+    +D  D +  + +   G L    +  
Sbjct: 359 IITHVPVVGLDFRPKALYICFMVRRVLMAVKDPKLVDDRDYVGNKRLELAGQLLSLLFED 418

Query: 380 LLKK----EKSGTSAVLKESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQ 431
           L KK     K     VL + +  + F A +   +  N++  G    +S G  S  +  M+
Sbjct: 419 LFKKFNTDLKMNIDKVLSKKNRTSEFDAFNHMQSHGNYITLGMNRAISTGNWSVKRFKME 478

Query: 432 ASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTP 489
            +G   +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +CP  TP+G  
Sbjct: 479 RAG---VTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEA 535

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ-ALMVMLDGRIVG 548
           CGL+ +L     I+ Y   + + ++   L +  +L ++   Q I  + A ++ ++G  + 
Sbjct: 536 CGLVKNLALMTHITTYDDEEPIKKLVFFLGAEDILSVSG--QEIHGKGAYVIFVNGTPLA 593

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
             +     + +   R  +  G     +   +Y+    K       +++ T  GR+ RP++
Sbjct: 594 LTVQ--PKTFLTSFRNFRRQGRV--SAFVSIYINHHTKA------VHIATDEGRICRPLI 643

Query: 609 N--------------------------LAAGNIEWIGTFEQVFMDICITMKEAY--PGIT 640
                                      L  G +E++   E+    I +T  +A    GIT
Sbjct: 644 VVENNKPKVTKKSLEALRSGKMDFDDFLYRGMVEYVDVNEENDTLIALTEHDALTTAGIT 703

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
            H E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  
Sbjct: 704 -HLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVY 762

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
           P  P  +    + +  D  P G NA VAV+S++GYD+EDA++LNK+S +RGF    +F+ 
Sbjct: 763 PQQPMVKSRTIELIKYDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRK 822

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
                      Y T+                     +++  +   D+   K    RDP+ 
Sbjct: 823 -----------YATQ---------------------FRKYPNRTQDRIGDKQMDERDPSK 850

Query: 821 KALEDK-LGPDGLVYVGAK-------LNERDPMY-------SYWKESENRYVTCRYSGKE 865
            + +   LG DG+  VG +       LN+  P+        S    +E++     Y   +
Sbjct: 851 PSKKHAILGSDGMALVGEQVNSGETYLNKEVPINTGGNGIGSDVGTNEHKPAPMTYRLPD 910

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              ++ + +S    E   +      +  R  R P +GDKF+SR GQKG+  +    ED+P
Sbjct: 911 PSYIDKIMISQTENETMVIK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMP 965

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIG 949
           F DSG+ PDI+ NPHGFPSRMT+G
Sbjct: 966 FADSGVTPDIIMNPHGFPSRMTVG 989



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN S  Y   F    +     I +++G++Y G + + SG+ G  + A IFFG ++YQ
Sbjct: 999  AGVLNGSLEYGTAFGGSNVDDMGDILIKNGFSYSGKDFVTSGITGESLPAYIFFGPIYYQ 1058

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            +L+HMV DK  ++    R    +   +    DG + +G    ERD + +Y
Sbjct: 1059 KLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY 1106


>gi|260945433|ref|XP_002617014.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
           lusitaniae ATCC 42720]
 gi|238848868|gb|EEQ38332.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
           lusitaniae ATCC 42720]
          Length = 1159

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 259/1019 (25%), Positives = 420/1019 (41%), Gaps = 195/1019 (19%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGL-------DLAVEDIAPI 94
           K LTD       DK N    FL   G    H+ SF++ +D  L       +L + D+ P 
Sbjct: 29  KKLTDP-ISTAKDKWNLLPAFLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDP- 86

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
             + Y K L + +   + S P       G       P E R     YS P  V V ++  
Sbjct: 87  --QFYLKYLDIRVGHKSSSAP-------GTKEVIMAPHECRLRDLTYSAPIYVDVEYTRG 137

Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---- 210
            K       E+GR+PIML+S +C L  +   Q+    E P + GGYFIV G EK++    
Sbjct: 138 RKIIMHKDLEIGRMPIMLRSNKCVLDGIDEHQMAVFEECPIDPGGYFIVNGTEKVILIQE 197

Query: 211 -----RLLI-----------------NNRRNHPIAIKRNA--WKNRGLLFSDLGVYIRSV 246
                R+++                 + R++    I +N   +     +  D+ + +   
Sbjct: 198 QLSKNRIIVEADEKKAIVQASVTSSTHERKSKTYVISKNEKIYLKHNSIAEDVPIVVVLK 257

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK 306
                +   +L  V   ++++     + +  +   ++   E I TQ  + ++ G+  K  
Sbjct: 258 AAGIVSDMEILQLVCGANSQY-----QDLFAINFEEAAKLE-IFTQQQALLYIGKRVKTV 311

Query: 307 LQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
            +     L++++     +   ++ HL     ++ +K L ++ M  K+   +     +D  
Sbjct: 312 RRAGAPKLSQLQEGIEAIATTVIAHLTVSDLNFREKALYIAIMARKVLMTMHNPSMVDDR 371

Query: 363 DSIMLQEIMTGGSL----YLQLLKKE----KSGTSAVLKESDIYAAFRA--------SSI 406
           D +  + +   G L    +  L KK     K+    +LK+    + F A        ++I
Sbjct: 372 DYVGNKRLELAGQLMSLLFEDLFKKFNTDFKANIDKILKKPSRTSEFDALLSINIHSNNI 431

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS 465
              M   ++TGN S  +      M+ +G   +   ++R+ Y+S    + R  S F++ R 
Sbjct: 432 TMGMNRAISTGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISSQFEKSRK 484

Query: 466 -SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSL 521
            S PR L+   +G +C   TP+G  CGL+ +L     I+   E  P K L  I      L
Sbjct: 485 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCFI------L 538

Query: 522 GMLPLTPVIQSI--PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIV 579
           G   +  +  +    E    V L+G +VG    +     V   R L+  G K+ + + I 
Sbjct: 539 GCEDIYSIDSATIYTEGNYGVFLNGTMVGTT--RFPVKFVKDFRRLRRSG-KVSEFISIF 595

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVM-----------------NLAAGN-------- 614
                         +++ T  GR+ RP++                  L +G+        
Sbjct: 596 TNSHQ-------AAVHIATDGGRVCRPLIIVDEVTGQPRVEAHHLKKLLSGDWVFDDFLK 648

Query: 615 ---IEWIGTFEQVFMDICITMKEAY--PGIT-THRELSKTDFLSNLANLIPMPDCNQSPR 668
              +E++   E+    I +  K+    P +  TH E+     L  +A LIP P  NQSPR
Sbjct: 649 YGLVEYLDVNEENDSLIALYEKDMAENPHLRFTHLEIEPFTVLGAVAGLIPYPHHNQSPR 708

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           N YQC MGKQ +G    N   +    LY +  P  P  +    + ++ D  P G NA VA
Sbjct: 709 NTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKSKTIELIEYDKLPAGQNATVA 768

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           V+SY+GYD+EDA++LNKSS +RGF    + +   I L+   N+  T+ + +G+       
Sbjct: 769 VMSYSGYDIEDALVLNKSSIDRGFGRCQVVRKNTIVLKRYPNH--TKDIVAGMRVDENGD 826

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            IF                                 + LGPDGL  VG ++ E   +Y+ 
Sbjct: 827 PIF-------------------------------AHNALGPDGLGEVGMRI-ENGQVYAN 854

Query: 849 WKESEN------------------RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
            +   N                  R     Y G E   V+ V MS    +   +      
Sbjct: 855 KQVPTNAGESVLGDHNQPQSAESHRETPAYYRGPEPSYVDQVMMSVSDNDQALIK----- 909

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 910 VLLRQTRRPELGDKFSSRHGQKGVCGIIVQHEDMPFNDMGISPDIIMNPHGFPSRMTVG 968



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1002 ILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQ 1061

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1062 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1104

Query: 883  SVTPNCAYIGY 893
             V  NC  +GY
Sbjct: 1105 DVCNNCGLMGY 1115


>gi|125808948|ref|XP_001360931.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
 gi|54636103|gb|EAL25506.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
          Length = 1137

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 232/912 (25%), Positives = 382/912 (41%), Gaps = 164/912 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSSPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM-MQSLHEEG--------- 288
            G Y     +  S T+++   V    A  + S ++ M  +G+  +S +  G         
Sbjct: 227 HGRYYL---KHNSMTDDI-PIVVIFKALGIVSDQEIMAHIGIDTKSQNRFGASLLEAFNL 282

Query: 289 -IHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCL 342
            + TQ  +  + G ++  ++ Q         E  D +LT  IL H+     ++  K + +
Sbjct: 283 KVFTQQRALDYMGSKLVVKRFQSATTKTPAEEARDLLLTT-ILAHVPVDNFNFQMKAIYV 341

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           S M  ++          D  D    + +   GSL    +  L K+         +K+   
Sbjct: 342 SMMVRRVMSAELDKTLFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELKMIADKNIPK 401

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S
Sbjct: 402 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 454

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 455 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVE 514

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSL 558
            + +           +L     ++ I E            +V ++G ++G  L+     L
Sbjct: 515 ERPVM----------ILAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHL 562

Query: 559 VPKLRMLKIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN-------- 609
           V  LR ++  G      S+   Y +R          +Y+ T  GR+ RP +         
Sbjct: 563 VRNLRYMRRKGRMGSFVSVHTSYTQR---------CIYIHTDGGRLCRPYIIVEKRRPRV 613

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
                             L  G IE++   E+    I    +    G TTH E+     L
Sbjct: 614 KQFHLDELERGVRKFDDFLLDGLIEYLDVNEENDSFIAWNEEHIEEG-TTHLEIEPFTLL 672

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +    
Sbjct: 673 GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTI 732

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           +  + D  P G NA VAV+S++GYD+EDA+ILNK+S +RG+    ++K+    ++     
Sbjct: 733 ELTNFDKLPAGQNATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR---- 788

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
           Y  +T                    + R+   V D    K  F          D L  DG
Sbjct: 789 YANQT--------------------FDRIMGPVKDALTNKVIFK--------HDVLDTDG 820

Query: 832 LVYVGAK-LNER-------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
           +V  G + LN++             +P+     +     V   Y G E   VE V +S+ 
Sbjct: 821 IVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVPYTAVPISYKGPEPSYVERVMVSAN 880

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             E   +      I  R  R P +GDKF+SR GQKG+  +    ED+P+ DSG+ PD++ 
Sbjct: 881 SEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPYNDSGICPDMIM 935

Query: 938 NPHGFPSRMTIG 949
           NPHGFPSRMT+G
Sbjct: 936 NPHGFPSRMTVG 947



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 764  ELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ELE  G+NY G +  YSG+ G+ +QA I+ G V+YQ+L+HMV DK   +
Sbjct: 981  ELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQKLKHMVQDKMHAR 1029


>gi|340517820|gb|EGR48063.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1158

 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 252/960 (26%), Positives = 406/960 (42%), Gaps = 121/960 (12%)

Query: 70  APHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKY 129
           A HI S++F ++  +   V     I  ++      L      +  P+           + 
Sbjct: 47  ARHIDSYNFFVEHEIKEIVRANRTIRSDV-DSNFWLEFTDIRVDRPRRLDYNDSKSRTEV 105

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
            P E R     Y+ P  V +A+  D +        +GR+P+MLKS +C L     +Q+ +
Sbjct: 106 TPMECRLRDMTYAAPIFVDIAYIRDKQKIVRKNVPLGRMPVMLKSCKCRLSGANNSQMEQ 165

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI--AIKRNAWKNRGLLFS----DLGVYI 243
             E P + GGYFIV G EK++ +     +N  I  A ++N   +  +  S        Y+
Sbjct: 166 MNECPLDPGGYFIVNGTEKVILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYV 225

Query: 244 RSVKRDESA-TNNVL----HFVTNGSARFMFSHRKSMCLLGMMQSLHEE----------- 287
            ++K+D+   T+N+L      V    A    S  + M L+      +++           
Sbjct: 226 -TLKKDKIVLTHNILVEGVPIVIVLKALGGLSDYEIMQLVAGSDGRYQDEFLVNFDEAAK 284

Query: 288 -GIHTQHDSKVFFGQIFK---EKLQYDLR-HLNEVEICDYMLTNCILPHLD----DYWDK 338
            GI TQ  +  + G   K   +K Q+  +   N VE     L N I+ H+     D++ K
Sbjct: 285 AGIFTQQQALEYIGSRVKMGSKKGQFGAQARRNNVEEGLDALANLIIAHVPIEGLDFYPK 344

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLKKEKSGTSA 390
            + ++ MT ++    Q    +D  D +  + +   G         L+ + + + K     
Sbjct: 345 AIYVAMMTRRVLMASQDPKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMSEVKMSIDK 404

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR------ 444
            LK+++      A  + S   N +  G   A        +Q+  + +   N+NR      
Sbjct: 405 FLKKNNRAVPLDAVHMISNHANSIGLGINRA--------IQSGNWTVKRFNMNRAGVTHV 456

Query: 445 ---MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
              + Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L   
Sbjct: 457 LSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALM 516

Query: 500 CQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
             I+  +  + V+  I ++ V +  +      +   E + ++ ++G    + L +     
Sbjct: 517 THITTNVDEAPVMRWIFTLDVGVEPIRNFSGAEMHREGSYIIHVNG--TPFALTRYPKRF 574

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN------ 609
             + R ++  G   P     V +         +  +++ T  GR+ RP   V N      
Sbjct: 575 THRFRTMRRRGWISP----FVGIHTNSH----FNAIHIATDEGRICRPYIIVKNGKQKLK 626

Query: 610 -----------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI-TTHRELSKTDFL 651
                            L  G +E++   E+   D  IT+ E    + TTH E+     L
Sbjct: 627 PEHLRLLQLGKVTFDDFLTKGIVEYLDVNEE--NDALITIYEDQVTMSTTHLEIEPFTLL 684

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
             +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P       
Sbjct: 685 GAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLVYPQRPMVITKTI 744

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
             +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+  Y  
Sbjct: 745 QLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQK-YPN 803

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
              E +   V+      +I  GV+   + +H   D         R  + +A+  K  P  
Sbjct: 804 GRRERIGDPVN------EIENGVMRRIK-KHEALDADGLAVVGQRIHSGEAMVKKETPLD 856

Query: 832 LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
           +   G  L +R P       SE R     Y   +   ++ V +S   TE  +       +
Sbjct: 857 MTTTGIGL-DRGP-------SEYRDTAVSYRIADPAYIDKVMISQ--TEKDTT---VIKV 903

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             R  R P +GDKF+SR GQKG+  +    ED+PF DSGL PDI+ NPHGFPSRMT+G L
Sbjct: 904 QTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKL 963



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 25/152 (16%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E GF  G  F+S  +E      ++ G+++ G +   SG+ G  ++A IF G ++YQRL+H
Sbjct: 979  EYGF--GDAFRSHPVEQVSKVLVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKH 1036

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    R    +   +    DG + +G    ERD + +Y              
Sbjct: 1037 MVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY-------------- 1080

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            G  ++ +E + +SS       +   C   GYR
Sbjct: 1081 GASQLLLERLMLSSDGVM-IDICQQCGLFGYR 1111


>gi|171689286|ref|XP_001909583.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944605|emb|CAP70716.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1160

 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 243/922 (26%), Positives = 384/922 (41%), Gaps = 167/922 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + Y+ P  V +A+  +G        ++ R+P+MLKS +C+L     A++ E 
Sbjct: 110 PMECRLRDATYAAPVVVDIAYPKNGVRNIRKNVQLCRIPVMLKSSKCYLNGANNARMEEL 169

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAW--------------------- 229
            E P + GGYFIVGG EK++ +     +N  I  K +                       
Sbjct: 170 NECPLDPGGYFIVGGTEKVILIQEQLSKNRVIVEKDDKGGVQASVTSSTHERKSKTYVVL 229

Query: 230 -KNRGLLFSDL---GVYIRSVKRDESATNN--VLHFVTNGSARFMFSHRKSMCLLGMMQS 283
            K+R LL  ++    + I  V +     ++  ++  V  G +R+          L   + 
Sbjct: 230 KKDRILLTHNILVEAIPIVIVLKALGGLSDYDIMELVAGGDSRYQDD------FLINFED 283

Query: 284 LHEEGIHTQHDSKVFFGQIFK--------EKLQYDLRHLNEVEICDYMLTNCILPHLD-- 333
             + G++TQ  +  + G   K         K     R  N +E     L+N I+ H+   
Sbjct: 284 AAKAGVYTQQQALEYVGARVKMGGPKKPSPKFSAGPRR-NPIEEGLDALSNLIVAHVTVK 342

Query: 334 --DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAV 391
             D++ K + ++ M  ++   V     +D  D +  + +   G L   L +    G    
Sbjct: 343 DLDFYPKTIYIAMMVRRILMAVHNPELVDDRDFVGNKRLELAGQLLSLLFEDLLKGFIGQ 402

Query: 392 LKESDIYAAFRASSIESAMTNFLATGN----VSAGKNSTLQL---------MQASGFVIM 438
           LK +++   F+  +  SA       G+    ++ G N  +Q          M  +G   +
Sbjct: 403 LK-ANMEHFFKRPNRTSAYDPIGPIGSYGTMITQGLNRAIQSGNWTVKRFGMNRAG---V 458

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y++    + R  S F++ R  S PR L+   WG +C   TP+G  CGL+ +L
Sbjct: 459 THVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNL 518

Query: 497 TTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA 555
                I+ E    KV   + +++  + ++      +   E A ++ ++G      LD  A
Sbjct: 519 ALMTHITTEAGEEKVKKCVSTLIEGIRLIEECSGTEMHEENAFIIHVNGTPYALTLD--A 576

Query: 556 TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN--- 609
            +   + +  +  G  +  +   ++             +++ T  GR+ RP   V N   
Sbjct: 577 AAFTKRFKQFRRRG--VLSAFIGIHTSHAT------ASIHIATDEGRICRPYIIVENGKS 628

Query: 610 -LAAGNIEWI----GTFEQVFM-------------DICITMKEA-YPGITTHRELSKTDF 650
            L A +++ +     TFE                 D  I + E+     TTH E+     
Sbjct: 629 MLEAAHLDLLRHKKATFEDFLKKGVLEYLDVNEENDALIAVHESDINDQTTHLEIEPFTI 688

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L  +A LIP P  NQSPRN YQC MGKQ +G    N + +     Y L  P  P      
Sbjct: 689 LGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGFIAYNQQNRIDTLHYTLVYPQRPMVITKT 748

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
              +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +FK    EL    N
Sbjct: 749 IQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKYTTELLQYPN 808

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG---RDPANKALEDK- 826
                                                 + KD  G   RD   KA +   
Sbjct: 809 --------------------------------------RNKDRLGGVQRDEDGKAKDRHA 830

Query: 827 -LGPDGLVYVGAKLNERDPMYSYWKES----------ENRYVT------CRYSGKEEMCV 869
            L  DGL   G K+ + D M    KE+          E+R +T        Y  K+   V
Sbjct: 831 VLDNDGLATPGMKMKDGDIM--IMKETPVDQTSTNIGEDRKITEFRPCPISYKIKDPAIV 888

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + V +++   E G  TP    +  R  R P +GDKF+SR GQKG+  +    EDLPF+D 
Sbjct: 889 DKVVITT--KESG--TP-LLKVRTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPFSDK 943

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           GL PDI+ NPHGFPSRMT+G L
Sbjct: 944 GLTPDIIMNPHGFPSRMTVGKL 965



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 23/151 (15%)

Query: 750  RGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            R +  G  F+S  +E      +E G+++ G +   SG+ G   +A +F G + YQRL+HM
Sbjct: 980  REYGFGDAFRSHPVEEMGKVLIEHGFSWEGKDYFTSGITGEPHEAYLFNGPIFYQRLKHM 1039

Query: 804  VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
            V+DK  ++    R    +   +    DG + +G    ERD + +Y              G
Sbjct: 1040 VADKMHSRSRGPRAVLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------G 1083

Query: 864  KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
              ++ +E +  SS  T+   V   C  +GY+
Sbjct: 1084 ASQLLLERLMYSSDVTK-VDVCERCGLMGYK 1113


>gi|225464023|ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
           vinifera]
          Length = 1142

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 261/1015 (25%), Positives = 407/1015 (40%), Gaps = 198/1015 (19%)

Query: 52  KNFGKPPDKQN--------EFLLTLG--APHIASFDFMLDEGLDLAVED----IAPIEFE 97
           K+F   P KQ         EFL   G    H+ SF++ +   +   V      ++ ++  
Sbjct: 8   KHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPS 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
           IY     L      I EP +    +    N   P   R +   Y+ P  V + +      
Sbjct: 68  IY-----LRFKDVRIGEPSITVDGISEKLN---PHTCRLSDMTYAAPILVNIEYITGSHV 119

Query: 158 GGTFTKE----VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV--- 210
             T  ++    +GR+PIML+S  C L     A+L   GE P + GGYF+V G EK++   
Sbjct: 120 QKTRVEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQ 179

Query: 211 ------RLLINNRRNHPIAI------------------KRNAWKNRGLLFSDLGVYIRSV 246
                 R++I+  +   I                    K   W       S + + I   
Sbjct: 180 EQLSKNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMK 239

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE- 305
                +   V+  V           R S  LL  M+     GI+TQ  +  F  +  K+ 
Sbjct: 240 AMGMESDQEVVQMVGRNP-------RYSALLLPSMEECASHGIYTQQQALEFLERKVKKL 292

Query: 306 -----KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                 L+ + R +  +   D  + N  +   +++  K L ++ M  ++   +     +D
Sbjct: 293 PFYNPSLEKEGRGMAILR--DTFIANVPVRQ-NNFRPKCLYVAVMLRRMMDAILNKDAMD 349

Query: 361 SEDSIMLQEIMTGGSLYLQLLKKE--KSGTSAVLKESDIYAA--FRASSIE-SAMTNFLA 415
            +D +  + +   G L + LL ++  K+  S V K  D   A   R+S  + S    F+ 
Sbjct: 350 DKDYVGNKRLELSGQL-ISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIV 408

Query: 416 TGNVSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHRGS-YFQEMRS 465
             +++ G   TL           M   G   M++ + R+ Y+     + + S  F++ R 
Sbjct: 409 RDSITVGLERTLSTGNWDVKRFRMHRKG---MSQVVARLSYIGSLGHMTKISPQFEKSRK 465

Query: 466 -SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQIPSVL 518
            S PR L+   WG +CP  TP+G  CGL      + H+TT+ + S  I         S+ 
Sbjct: 466 VSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLI---------SLC 516

Query: 519 VSLGM--LPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATSLVPKLRMLKIVGEKIPKS 575
            SLG+  L L    +     + +++ +G I+G +   Q   + + KLR    +GE +   
Sbjct: 517 YSLGVEDLELLSGEELHTPNSFLIIFNGLILGKHRRPQRFANALRKLRRAGKIGEFVS-- 574

Query: 576 LEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-----------IEWIGTFEQV 624
              V++   +        +Y+ +  GR+ RPV+    G            I+ + TF+  
Sbjct: 575 ---VFVNEKQHC------VYIASDGGRVCRPVVIADKGKSRIKEHHMKELIDGVRTFDDF 625

Query: 625 FMD---------------ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
             D               I +   +A P  TTH E+     L   A LIP P  NQSPRN
Sbjct: 626 LRDGLIEYLDVNEENNALIALYEADAKPE-TTHIEIEPFTILGVCAGLIPFPHHNQSPRN 684

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
            YQC MGKQ MG    N   +    LY L  P  P       + +  D    G NA VAV
Sbjct: 685 TYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 744

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
           +SY+GYD+EDA+++NKSS +RGF    + K                  +S V+       
Sbjct: 745 MSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK-----------------FSAVN------- 780

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD------ 843
                   QR  +  SD+       G D     + D    DGL   G  +   D      
Sbjct: 781 --------QRYENNASDRIVRPLKVGHDAERMQILDD---DGLAAPGEIIKPNDIYINKE 829

Query: 844 -------PMYSYWKESENRYVTCR--YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
                  P+ S     ++ Y   R  + G E     V R++    +  ++   C     R
Sbjct: 830 SPIITKGPLISPVGLPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSNL---CIKFLIR 886

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             R P VGDKF+SR GQKG+C      ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 887 HTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVG 941



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G  +QA IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 982  VKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1041

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    +G + VG    ERD + +Y
Sbjct: 1042 EGRARNGGLRVGEM--ERDCLIAY 1063


>gi|145341844|ref|XP_001416013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576236|gb|ABO94305.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1146

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 242/989 (24%), Positives = 406/989 (41%), Gaps = 187/989 (18%)

Query: 72  HIASFDFMLDEGLDLAVEDIA------PIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIH 125
           HI SF+++++E +   +   A        +   Y K   +++ + ++ E  V        
Sbjct: 38  HIDSFNYLVNEEIKKIIHAKANERVTCDSDPNFYLKYTNIHVGRPSVEEDYV-------- 89

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGK------AGGTFTKEVGRVPIMLKSKRCHL 179
             +  P + R     Y+ P  V V ++   +        G     +GR+P+ML+S RC L
Sbjct: 90  VEEITPQQCRLRDMTYAAPITVDVEYTRGKEIVTRQAKNGVGGVVIGRIPLMLRSSRCVL 149

Query: 180 RNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD- 238
                 +L   GE P + GGYFIV G EK+            I I+    KNR ++  D 
Sbjct: 150 TGKNEDELARLGECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIIEVDA 197

Query: 239 ---LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDS 295
              +G  + S   +  +  N++  V +G  +F   H      + +M  L   G+ +  ++
Sbjct: 198 KGEIGASVTSSTHERKSKTNIV--VKHG--KFYLRHNTFADDIPIMIVLKAMGLESDQEA 253

Query: 296 ----------KVFFGQIFKE-------KLQYDLRHL-NEVEICDYMLTN----------- 326
                      +  G   +E         Q  L +  N+V +    +TN           
Sbjct: 254 VQMIGSEPAYAMLLGPTLQECQAAGVFTTQQALEYCANKVRVVKTHMTNRPGVRNFGRSR 313

Query: 327 ----------CILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMT 372
                      +L H+     D+  K   +S M  ++ + +    Q+D +D    + +  
Sbjct: 314 VDEARDILAGVVLAHVPVTSYDFRQKCAYISIMVRRILNAMLDPTQIDDKDYYGNKRLEL 373

Query: 373 GGSL--------YLQLLKKEKSGTSAVLKES------DIYAAFRASSIESAMTNFLATGN 418
            G L        + +L    K    AVL ++      DI    R  ++ + + + +++GN
Sbjct: 374 AGQLIALLFEDCFKRLNADLKRQADAVLSKANRATQFDILKCIRQDTLSNGLEHAISSGN 433

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAW 476
            +  +      M+  G   + + ++R+ ++S    + R  S F++ R  S PR L+   W
Sbjct: 434 WTVKRFR----MERKG---VTQVLSRLSFISALGMMTRITSQFEKTRKVSGPRALQPSQW 486

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLT--PVIQ 531
           G +CP  TP+G  CGL+ +L     ++   E  P + LA       +LG+ PLT     +
Sbjct: 487 GMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLRRLAH------ALGVEPLTWLNAGE 540

Query: 532 SIPEQALMVMLDGRIVG-YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL 590
                   V+++G ++G +   +  +    KLR    +GE +      VY          
Sbjct: 541 MHSPSGAHVLMNGSLLGVHAQPEAFSHAFRKLRRAGRIGEFVS-----VYTADG------ 589

Query: 591 YPGLYLFTGPGRMLRPVMNLAAGN--------------------------IEWIGTFEQV 624
              +Y+ +  GR+ RP++ +  G                           +E++   E+ 
Sbjct: 590 --CVYISSDGGRVCRPLIIIERGEPLLTQEHLDELKDGHRTFNDFLREGLVEYLDVNEEN 647

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
              I +   E     TTH E+     L   A +IP P  NQSPRN YQC MGKQ MG   
Sbjct: 648 NSYIALYEDEVNDE-TTHLEIEPFTLLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIA 706

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
            N   +    +Y L  P  P  +    + +  D    G NA +AV+SY+GYD+EDA+++N
Sbjct: 707 FNQLNRMDTLMYLLVYPQKPIVKTKTIELIGYDRLGAGQNATIAVMSYSGYDIEDAIVMN 766

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           ++S +RGF    + +    +++     Y   TM   V                Q  RH +
Sbjct: 767 RASLDRGFGRCTVLRKYSAQVKK----YSNRTMDRIVGPKDDHRA-------NQNSRHHL 815

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK--LNERDPMYSYWKESENRYVT--CR 860
            D          D    A+  ++ P G +YV  +  +N RDPM +     +  Y +    
Sbjct: 816 LD----------DDGIAAVGGRIKP-GDIYVNKQTPVNTRDPMANPHAMPDTMYRSNPLS 864

Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
           Y G       V ++    T+ G           R  R P VGDKF+SR GQKG+C +   
Sbjct: 865 YKGPAGESAIVDKVLLTMTDEGQFNIKTL---VRQTRRPEVGDKFSSRHGQKGVCGIILD 921

Query: 921 AEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 922 QEDFPFSERGITPDLIMNPHGFPSRMTVG 950



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 32/196 (16%)

Query: 714  LDMDNFPMGTNAIVAVISYTGYDMEDAMILNK--------SSYERG-FAHGCIFKSMFIE 764
            LD ++FP     I   +    +     M + K        +  E G F  G  F    +E
Sbjct: 920  LDQEDFPFSERGITPDLIMNPHGFPSRMTVGKMIELLGGKAGLESGRFHDGTAFGGDTVE 979

Query: 765  ------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
                  +ESGY+Y G + ++ G+ G  ++  +F G V+YQ+L+HMV DK   +    R  
Sbjct: 980  AIQQTLVESGYSYKGKDMLHCGITGEALEVNVFMGPVYYQKLKHMVQDKMHARARGPRVV 1039

Query: 819  ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
              +   +    DG + +G    ERD +  Y              G  ++ +E + +SS  
Sbjct: 1040 LTRQPTEGRARDGGLRLGEM--ERDCLIGY--------------GASQLILERLMISSDQ 1083

Query: 879  TEGGSVTPNCAYIGYR 894
             E   V   C  +G++
Sbjct: 1084 FE-AQVCTKCGLLGFQ 1098


>gi|336468399|gb|EGO56562.1| hypothetical protein NEUTE1DRAFT_83883 [Neurospora tetrasperma FGSC
           2508]
 gi|350289345|gb|EGZ70570.1| putative DNA-directed RNA polymerase III second-largest chain
           [Neurospora tetrasperma FGSC 2509]
          Length = 1155

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 239/925 (25%), Positives = 376/925 (40%), Gaps = 167/925 (18%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N   P E R     Y+ P  V +A++ D          + R+P+MLKS +C+L   T AQ
Sbjct: 103 NPVTPMECRLRDLTYAAPVEVDIAYTRDKNVIVRKNIPLCRIPVMLKSAKCYLNGATNAQ 162

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS--------D 238
           +    E P + GGYF++GG EK++  LI  + +    I     K  G++ S         
Sbjct: 163 MEVFNECPLDPGGYFVIGGTEKVI--LIQEQLSKNRIIVEADEKTGGVMASVTSSTHERK 220

Query: 239 LGVYIRSVKRDES-----------------------ATNNVLHFVTNGSARFMFSHRKSM 275
              Y+  +K+D                         + N+++  V  G AR+        
Sbjct: 221 SKTYV-VLKKDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDIIELVCGGDARYQDD----- 274

Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFK-----EKLQYDLRHLNEVEICDYMLTNCILP 330
             L         G++TQ  +  + G   K      K     R  +  E  D  L N ++ 
Sbjct: 275 -FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEEGLD-ALANLVIA 332

Query: 331 HLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLK 382
           H+     D++ K + ++ M  ++    Q    +D  D +  + +   G L    +  L K
Sbjct: 333 HVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFK 392

Query: 383 KEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAEN 441
           K  S     +   + +     +S        +A G+ +S G N  +Q   +  + +   N
Sbjct: 393 KFISDVKYNI--DNFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQ---SGNWTVKRFN 447

Query: 442 INR---------MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPC 490
           +NR         + Y++    + R  S F++ R  S PR L+   WG +C   TP+G  C
Sbjct: 448 MNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEAC 507

Query: 491 GLLNHLTTNCQISEYIPSK-VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
           GL+ +L     I+  +P + V   I +   S+G +      +   + + ++ L+G    +
Sbjct: 508 GLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNG--TPF 565

Query: 550 ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP--- 606
            + +       + R L+  G   P     V +   E     +  +++ T  GR+ RP   
Sbjct: 566 AVTREPKRFAARFRTLRRRGWVSP----FVSIHINEH----FSAVHIATDEGRICRPYII 617

Query: 607 VMN-----------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTH 642
           V N                       L +G +E++   E+   D  + ++E      TTH
Sbjct: 618 VKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEE--NDTLVALQEDQITNSTTH 675

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P 
Sbjct: 676 MEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQ 735

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P         +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+   
Sbjct: 736 RPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYT 795

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            EL+ GY    T      V G M                         KD   +     A
Sbjct: 796 AELQ-GY----TNGRRDRVGGIM-------------------------KDEDDKPIVKHA 825

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKES----------------ENRYVTCRYSGKEE 866
           +   L  DGL  VG+K+     M    KE+                + R  +  Y   + 
Sbjct: 826 I---LDADGLAQVGSKVESGQTMIK--KETPLDQISTGIAGDRGSDDYRDASTNYRISDP 880

Query: 867 MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             ++ V +S    E   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF
Sbjct: 881 AIIDKVMISVNERENKLIK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPF 935

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           +D GL PDI+ NPHGFPSRMT+G L
Sbjct: 936 SDKGLRPDIIMNPHGFPSRMTVGKL 960



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 23/152 (15%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E+ +  G  F+S  +E      ++ G+++ G +   SG+ G  M+A I+ G + YQRL+H
Sbjct: 974  EKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKH 1033

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    R    +   +    DG + +G    ERD + +Y              
Sbjct: 1034 MVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY-------------- 1077

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            G  ++ +E + +SS  TE   V   C   GY+
Sbjct: 1078 GASQLLLERLMISSDGTE-LDVCQECGLFGYK 1108


>gi|85083820|ref|XP_957195.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
           crassa OR74A]
 gi|7800864|emb|CAB91222.1| probable DNA-directed RNA polymerase III second-largest chain
           [Neurospora crassa]
 gi|28918282|gb|EAA27959.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
           crassa OR74A]
          Length = 1155

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 239/925 (25%), Positives = 376/925 (40%), Gaps = 167/925 (18%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N   P E R     Y+ P  V +A++ D          + R+P+MLKS +C+L   T AQ
Sbjct: 103 NPVTPMECRLRDLTYAAPVEVDIAYTRDKNVIVRKNIPLCRIPVMLKSAKCYLNGATNAQ 162

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS--------D 238
           +    E P + GGYF++GG EK++  LI  + +    I     K  G++ S         
Sbjct: 163 MEVFNECPLDPGGYFVIGGTEKVI--LIQEQLSKNRIIVEADEKTGGVMASVTSSTHERK 220

Query: 239 LGVYIRSVKRDES-----------------------ATNNVLHFVTNGSARFMFSHRKSM 275
              Y+  +K+D                         + N+++  V  G AR+        
Sbjct: 221 SKTYV-VLKKDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDIIELVCGGDARYQDD----- 274

Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFK-----EKLQYDLRHLNEVEICDYMLTNCILP 330
             L         G++TQ  +  + G   K      K     R  +  E  D  L N ++ 
Sbjct: 275 -FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEEGLD-ALANLVIA 332

Query: 331 HLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLK 382
           H+     D++ K + ++ M  ++    Q    +D  D +  + +   G L    +  L K
Sbjct: 333 HVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFK 392

Query: 383 KEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAEN 441
           K  S     +   + +     +S        +A G+ +S G N  +Q   +  + +   N
Sbjct: 393 KFISDVKYNI--DNFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQ---SGNWTVKRFN 447

Query: 442 INR---------MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPC 490
           +NR         + Y++    + R  S F++ R  S PR L+   WG +C   TP+G  C
Sbjct: 448 MNRAGITHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEAC 507

Query: 491 GLLNHLTTNCQISEYIPSK-VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
           GL+ +L     I+  +P + V   I +   S+G +      +   + + ++ L+G    +
Sbjct: 508 GLVKNLALMTHITTNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNG--TPF 565

Query: 550 ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP--- 606
            + +       + R L+  G   P     V +   E     +  +++ T  GR+ RP   
Sbjct: 566 AVTREPKRFAARFRTLRRRGWVSP----FVSIHINEH----FSAVHIATDEGRICRPYII 617

Query: 607 VMN-----------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTH 642
           V N                       L +G +E++   E+   D  + ++E      TTH
Sbjct: 618 VKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEE--NDTLVALQEDQITNSTTH 675

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P 
Sbjct: 676 MEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQ 735

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P         +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+   
Sbjct: 736 RPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYT 795

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            EL+ GY    T      V G M                         KD   +     A
Sbjct: 796 AELQ-GY----TNGRRDRVGGIM-------------------------KDEDDKPIVKHA 825

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKES----------------ENRYVTCRYSGKEE 866
           +   L  DGL  VG+K+     M    KE+                + R  +  Y   + 
Sbjct: 826 I---LDADGLAQVGSKVESGQTMIK--KETPLDQISTGIAGDRGSDDYRDASTNYRISDP 880

Query: 867 MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             ++ V +S    E   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF
Sbjct: 881 AIIDKVMISVNERENKLIK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPF 935

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           +D GL PDI+ NPHGFPSRMT+G L
Sbjct: 936 SDKGLRPDIIMNPHGFPSRMTVGKL 960



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 23/152 (15%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E+ +  G  F+S  +E      ++ G+++ G +   SG+ G  M+A I+ G + YQRL+H
Sbjct: 974  EKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKH 1033

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    R    +   +    DG + +G    ERD + +Y              
Sbjct: 1034 MVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY-------------- 1077

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            G  ++ +E + +SS  TE   V   C   GY+
Sbjct: 1078 GASQLLLERLMISSDGTE-LDVCQECGLFGYK 1108


>gi|380017785|ref|XP_003692825.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Apis
           florea]
          Length = 1134

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 241/962 (25%), Positives = 403/962 (41%), Gaps = 144/962 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNK-YY 130
           HI SF++ ++    + ++ I     ++      L  VK       +P    G +  +   
Sbjct: 45  HIDSFNYFIN----VEIKKIVKANEKVLSDADPLFYVKYLNVHVGLPDVEEGFNVTRSTT 100

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + +    +        +GR+PIML+S  C L   +  +L + 
Sbjct: 101 PHECRLRDLNYSAPITVDIEYIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELAKM 160

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    +NR +L  D    +     SV
Sbjct: 161 NECPHDPGGYFIVNGQEKV------------ILIQEQMLRNRIILEEDSKGCIVASCNSV 208

Query: 247 KRDESATNNVL---------HFVTNGS--------ARFMFSHRKSMCLLGM--------- 280
             +     N++         H +            A  + S ++ M L+G          
Sbjct: 209 THERKTKTNIVGRAGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFA 268

Query: 281 --MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI--LPHLD-DY 335
             ++  H   +  Q+ +  F     K+K    ++     E+ D + TN +  +P +D ++
Sbjct: 269 PSLEECHVLNVFAQNQALRFLSNKRKQKRYSVIKSSITDEMKDALATNILSHVPVIDFNF 328

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-------- 383
             K   ++ M  K+         +D  D    + +   GSL    +  L K+        
Sbjct: 329 KMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQI 388

Query: 384 -EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
            +K+       + DI    R   I + +   +++GN +  +      M+  G   + + +
Sbjct: 389 ADKNIPKIKAAQFDIVKHMRQDQITNGLAFAISSGNWTIKRFK----MERHG---VTQVL 441

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L    
Sbjct: 442 SRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMT 501

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSL 558
            I+  I  + + ++     +LG+  +  +   +   +   MV L+G I+G + +     L
Sbjct: 502 HITTEIDEEPIIRLA---FNLGVENVNILGGEEINNKNVYMVFLNGNILGIVKN--YQRL 556

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN------ 609
           V   R+L+  G  +      +Y +   +       + + +  GR+ RP   V N      
Sbjct: 557 VNVFRLLRRKG--LINGFVSIYTQHQHR------CIQISSDGGRLCRPYIIVQNGDPLVQ 608

Query: 610 -----------------LAAGNIEWIGTFEQVFMDICITMKEAYPG-ITTHRELSKTDFL 651
                            L  G IE++   E+   D  I   E++    TTH E+     L
Sbjct: 609 EEHIKLLEQGIRSFEDFLQDGLIEYLDVNEE--NDSSIAFNESHINEKTTHLEIEPFTLL 666

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A L+P P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P +P  +    
Sbjct: 667 GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTI 726

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + ++ D  P G NA +AV+SY+GYD+EDA+ILNK+S +RGF    ++++    L+   N 
Sbjct: 727 ELINFDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLVYRNAKCTLKRYANQ 786

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
                M   +DG+  ++            +H + D              K + +K  P  
Sbjct: 787 TYDRIMGPLIDGNTKKSV----------WKHEIIDSDGIAAPGEMVENRKVMVNKSSPAA 836

Query: 832 LVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
            +          P+ S   +++  Y  V   + G     +E V +SS   +   +     
Sbjct: 837 NI---------GPVNSGNVQTQTEYKDVPVVFKGPVPAYIEKVMISSNAEDAFLIK---- 883

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++ NPHGFPSRMT+G
Sbjct: 884 -LLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVG 942

Query: 950 FL 951
            L
Sbjct: 943 KL 944



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G+NY G +  YSG+ G  +QA I+ G V+YQ+L+HMV 
Sbjct: 959  FHYGTAFGGSKVEDVCSELVKHGFNYLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQ 1018

Query: 806  DKWQTK 811
            DK   +
Sbjct: 1019 DKMHAR 1024


>gi|66517310|ref|XP_625037.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
           [Apis mellifera]
          Length = 1134

 Score =  231 bits (588), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 243/962 (25%), Positives = 405/962 (42%), Gaps = 144/962 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNK-YY 130
           HI SF++ ++    + ++ I     ++      L  VK       +P    G +  +   
Sbjct: 45  HIDSFNYFIN----VEIKKIVKANEKVLSDADPLFYVKYLNVHVGLPDVEEGFNVTRSTT 100

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + +    +        +GR+PIML+S  C L   +  +L + 
Sbjct: 101 PHECRLRDLNYSAPITVDIEYIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELAKM 160

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    +NR +L  D    +     SV
Sbjct: 161 NECPHDPGGYFIVNGQEKV------------ILIQEQMLRNRIILEEDSKGCIVASCNSV 208

Query: 247 KRDESATNNVL---------HFVTNGS--------ARFMFSHRKSMCLLGM--------- 280
             +     N++         H +            A  + S ++ M L+G          
Sbjct: 209 THERKTKTNIVGRAGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFA 268

Query: 281 --MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI--LPHLD-DY 335
             ++  H   +  Q+ +  F     K+K    ++     E+ D + TN +  +P +D ++
Sbjct: 269 PSLEECHVLNVFAQNQALRFLSNKRKQKRFSVIKSSITDEMKDALATNILSHVPVIDFNF 328

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-------- 383
             K   ++ M  K+         +D  D    + +   GSL    +  L K+        
Sbjct: 329 KMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQI 388

Query: 384 -EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
            +K+       + DI    R   I + +   +++GN +  +      M+  G   + + +
Sbjct: 389 ADKNIPKIKAAQFDIVKHMRQDQITNGLAFAISSGNWTIKRFK----MERHG---VTQVL 441

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L    
Sbjct: 442 SRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMT 501

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSL 558
            I+  I  + + ++     +LG+  +  +   +   +   MV L+G I+G + +     L
Sbjct: 502 HITTEIDEEPIIRLA---FNLGVENVNILGGEEINNKNVYMVFLNGNILGIVKN--YQRL 556

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN------ 609
           V   R+L+  G  +      +Y +   +       + + +  GR+ RP   V N      
Sbjct: 557 VNVFRLLRRKG--LINGFVSIYTQHQHR------CIQISSDGGRLCRPYIIVQNGDPLVQ 608

Query: 610 -----------------LAAGNIEWIGTFEQVFMDICITMKEAYPG-ITTHRELSKTDFL 651
                            L  G IE++   E+   D  I   E++    TTH E+     L
Sbjct: 609 EEHVKLLEQGIRSFEDFLQDGLIEYLDVNEE--NDSSIAFNESHINEKTTHLEIEPFTLL 666

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A L+P P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P +P  +    
Sbjct: 667 GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTI 726

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + ++ D  P G NA +AV+SY+GYD+EDA+ILNK+S +RGF    ++++    L+     
Sbjct: 727 ELINFDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLVYRNAKCTLKR---- 782

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
           Y  +T Y  + G ++ A     V      +H + D              K + +K  P  
Sbjct: 783 YANQT-YDRIMGPLIDANTKKSV-----WKHEIIDSDGIAAPGEMVENRKVMVNKSSPAA 836

Query: 832 LVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
            +          P+ S   +++  Y  V   + G     +E V +SS   +   +     
Sbjct: 837 NI---------GPVNSGNVQTQTEYKDVPVVFKGPVPAYIEKVMISSNAEDAFLIK---- 883

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            +  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++ NPHGFPSRMT+G
Sbjct: 884 -LLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVG 942

Query: 950 FL 951
            L
Sbjct: 943 KL 944



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G+NY G +  YSG+ G  +QA I+ G V+YQ+L+HMV 
Sbjct: 959  FHYGTAFGGSKVEDVCAELVKHGFNYLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQ 1018

Query: 806  DKWQTK 811
            DK   +
Sbjct: 1019 DKMHAR 1024


>gi|195123595|ref|XP_002006289.1| GI20961 [Drosophila mojavensis]
 gi|193911357|gb|EDW10224.1| GI20961 [Drosophila mojavensis]
          Length = 1136

 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 235/905 (25%), Positives = 385/905 (42%), Gaps = 151/905 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P +V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPISVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM-MQSLHEEG--------- 288
            G Y     +  S T+++   V    A  + S ++ M  +G+  +S +  G         
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIMAHIGLDARSQNRFGASLLEAFNL 282

Query: 289 -IHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCL 342
            I TQ  +  + G ++  ++ Q         E  + +LT  IL H+     ++  K + +
Sbjct: 283 KIFTQQRALDYMGSKLVVKRFQSATTKTPSEEARELLLTT-ILAHVPVDNFNFQMKAIYV 341

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           S M  ++          D  D    + +   GSL    +  L K+         +K+   
Sbjct: 342 SLMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELKMIADKNIPK 401

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S
Sbjct: 402 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 454

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI- 506
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 455 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVD 514

Query: 507 --PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRM 564
             P   LA    V   +  +   P+         +V ++G ++G  ++Q    LV  LR 
Sbjct: 515 ERPVMTLAYNAGV-EDIREVSGNPINNP---HVFLVFINGNVLGLTINQ--RHLVRNLRY 568

Query: 565 LKIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----------- 609
           ++  G      S+   Y +R          +++ T  GR+ RP   V N           
Sbjct: 569 MRRKGRMGSFVSIHTSYTQR---------CIFIHTDGGRLCRPYIIVENQRPLVQQRHLD 619

Query: 610 ------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANL 657
                       L  G IE++   E+    I    ++  P  TTH E+     L   A L
Sbjct: 620 ELMRGVRKFDDFLHDGLIEYLDVNEENDSFIAWNEEQLEPH-TTHLEIEPFTLLGVCAGL 678

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           +P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +    +  + D
Sbjct: 679 VPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFD 738

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++     Y  +T 
Sbjct: 739 KLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR----YANQT- 793

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA 837
                              + R+   V D    K  F          D L  DG+V  G 
Sbjct: 794 -------------------FDRIMGPVKDALTNKVIFK--------HDVLDTDGIVAPGE 826

Query: 838 KLNERDPMYS-----------YWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
           ++  +  M +              +S+  Y  V   Y G E   +E V +S+   E   +
Sbjct: 827 QVQNKQIMINKEMPAVTSINPLEGQSQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLI 886

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 I  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++ NPHGFPS
Sbjct: 887 K-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPS 941

Query: 945 RMTIG 949
           RMT+G
Sbjct: 942 RMTVG 946



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF---KSMFIELE---SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F   K+  ++ E    G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 960  EGKFHYGTAFGGSKAADVQAELVRHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKH 1019

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1020 MVQDKMHAR 1028


>gi|195153847|ref|XP_002017835.1| GL17093 [Drosophila persimilis]
 gi|194113631|gb|EDW35674.1| GL17093 [Drosophila persimilis]
          Length = 1137

 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 226/924 (24%), Positives = 375/924 (40%), Gaps = 188/924 (20%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSSPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E P + GGYF+V G EK++           +  ++ +W    +L  D    ++      
Sbjct: 167 NECPLDPGGYFVVRGQEKVI-----------LIQEQLSWNK--MLTEDFNGVVQCQVTSS 213

Query: 251 SATNNVLHFVTNGSARFMFSHR------------KSMCLLGMMQSLHEEGIHTQHDSKVF 298
           +        V +   R+   H             K++ ++   + +   GI T+  ++  
Sbjct: 214 THEKKSRTLVLSKHGRYYLKHNSMTDDIPIVVIFKALGIVSDQEIMAHIGIDTKSQNR-- 271

Query: 299 FGQIFKEKLQYDLRHLNEVEICDYM------------------------LTNCILPHLD- 333
           FG    E   ++L+   +    DYM                        L   IL H+  
Sbjct: 272 FGASLLEA--FNLKVFTQQRALDYMGSKLVVKRFQSATTKTPAEEARELLLTTILAHVPV 329

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK--- 383
              ++  K + +S M  ++          D  D    + +   GSL    +  L K+   
Sbjct: 330 DNFNFQMKAIYVSMMVRRVMSAELDKTLFDDRDYYGNKRLELAGSLISLMFEDLFKRMNW 389

Query: 384 ------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
                 +K+       + D+    RA+ I + + + +++GN +  +      M+ +G   
Sbjct: 390 ELKMIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG--- 442

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 443 VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 502

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRI 546
           L     I+  +  + +           +L     ++ I E            +V ++G +
Sbjct: 503 LALMTHITTEVEERPVM----------ILAFNAGVEDIREVSGNPINNPNVFLVFINGNV 552

Query: 547 VGYILDQIATSLVPKLRMLKIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
           +G  L+     LV  LR ++  G      S+   Y +R          +Y+ T  GR+ R
Sbjct: 553 LGLTLNH--KHLVRNLRYMRRKGRMGSFVSVHTSYTQR---------CIYIHTDGGRLCR 601

Query: 606 PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
           P +                           L  G IE++   E+    I    +    G 
Sbjct: 602 PYIIVEKRRPRVKQFHLDELERGVRKFDDFLLDGLIEYLDVNEENDSFIAWNEEHIEEG- 660

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
           TTH E+     L   A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y L 
Sbjct: 661 TTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLV 720

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
            P +P  +    +  + D  P G NA VAV+S++GYD+EDA+ILNK+S +RG+    ++K
Sbjct: 721 YPQAPMVKTKTIELTNFDKLPAGQNATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYK 780

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
           +    ++     Y  +T                    + R+   V D    K  F  D  
Sbjct: 781 NSKCTVKR----YANQT--------------------FDRIMGPVKDALTNKVIFKHDV- 815

Query: 820 NKALEDKLGPDGLVYVGAK-LNER-------------DPMYSYWKESENRYVTCRYSGKE 865
                  L  DG+V  G + LN++             +P+     +     V   Y G E
Sbjct: 816 -------LDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVPYTAVPISYKGPE 868

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              VE V +S+   E   +      I  R  R P +GDKF+SR GQKG+  +    ED+P
Sbjct: 869 PSYVERVMVSANSEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMP 923

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIG 949
           + DSG+ PD++ NPHGFPSRMT+G
Sbjct: 924 YNDSGICPDMIMNPHGFPSRMTVG 947



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 764  ELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ELE  G+NY G +  YSG+ G+ +QA I+ G V+YQ+L+HMV DK   +
Sbjct: 981  ELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQKLKHMVQDKMHAR 1029


>gi|350420099|ref|XP_003492398.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Bombus impatiens]
          Length = 1130

 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 232/915 (25%), Positives = 379/915 (41%), Gaps = 165/915 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + +    +        +GR+PIML+S  C L   +  +L + 
Sbjct: 97  PHECRLRDLNYSAPITVDIEYIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELSKM 156

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD-LGVYIRSVKRD 249
            E P + GGYFIV G EK+            I I+    +NR +L  D  G  + S    
Sbjct: 157 NECPHDPGGYFIVNGQEKV------------ILIQEQMLRNRIILEEDSKGCIVASCNSS 204

Query: 250 ESATNNVLHFVTNGSARFM--------------------FSHRKSMCLLGM--------- 280
                   + V      +M                     S ++ M L+G          
Sbjct: 205 THERKTKTNIVGKAGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFA 264

Query: 281 --MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCI--LPHLD-DY 335
             ++  H   +  Q+ +  F     K+K    ++     E+ D + TN +  +P +D ++
Sbjct: 265 PTLEECHVLNVFAQNQALRFLSNKRKQKRYSVIKASVTDEMKDILATNILSHVPVIDFNF 324

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-------- 383
             K   ++ M  K+         +D  D    + +   GSL    +  L K+        
Sbjct: 325 KMKATYIALMIRKVMKAQSDGKLIDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKQI 384

Query: 384 -EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENI 442
            +K+       + DI    R   I + +   +++GN +  +      M+  G   + + +
Sbjct: 385 ADKNIPKIKAAQFDIVKHMRQDQITNGLAFAISSGNWTIKRFK----MERHG---VTQVL 437

Query: 443 NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           +R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L    
Sbjct: 438 SRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMT 497

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSL 558
            I+  I  + + ++     +LG+  +  +   +   ++  MV L+G I+G + +     L
Sbjct: 498 HITTEIDEEPIVRLA---FNLGVENVNILGGEEINNKKVYMVFLNGNILGIVKN--YQRL 552

Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN---- 614
           V   R+L+  G  +      ++ +   +       + + +  GR+ RP + +  GN    
Sbjct: 553 VNVFRLLRRKG--LINGFVSIHTQHQHR------CIQISSDGGRLCRPYIIVQNGNPLIQ 604

Query: 615 ----------------------IEWIGTFEQVFMDICITMKEAYPG-ITTHRELSKTDFL 651
                                 IE++   E+   D  I   E++    TTH E+     L
Sbjct: 605 EKHIKLLEQGIRSFEDFLQEGLIEYLDVNEE--NDSSIAFNESHINEKTTHLEIEPFTLL 662

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A L+P P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P +P  +    
Sbjct: 663 GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTI 722

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + ++ D  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF    I+++    L+     
Sbjct: 723 ELINFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGFGRCLIYRNAKCTLKR---- 778

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
           Y  +T Y  + G ++                         D   + P  K   D +  DG
Sbjct: 779 YANQT-YDRIMGPLI-------------------------DSNTKKPVWK--HDIIDSDG 810

Query: 832 LVYVGAKLNERDPMY---------------SYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           +   G  +  R  M                +   ++E + V   + G     VE V +SS
Sbjct: 811 IAAPGEMVENRKVMVNKSSPAANIGPVNAGNVQTQTEYKDVPVVFKGPVPAYVEKVMISS 870

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              +   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++
Sbjct: 871 NAEDAFLIK-----LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDYGICPDMI 925

Query: 937 FNPHGFPSRMTIGFL 951
            NPHGFPSRMT+G L
Sbjct: 926 MNPHGFPSRMTVGKL 940



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ GYNY G +  YSG+ G  +QA I+ G V+YQ+L+HMV DK   +    R    +   
Sbjct: 974  VKHGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPT 1033

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    +G + +G    ERD +  Y
Sbjct: 1034 EGRAKEGGLRLGEM--ERDCLIGY 1055


>gi|119497281|ref|XP_001265400.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
 gi|119413562|gb|EAW23503.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
          Length = 1200

 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 270/1027 (26%), Positives = 427/1027 (41%), Gaps = 214/1027 (20%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI S+++ ++  L   VE  + I  +I   
Sbjct: 67   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDI-DH 124

Query: 102  TLKLNIVKAAISEPKVPAGPVGIHFN----KYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            T  +      +  P     P  +  +       P E R   + Y+ P  V   +    + 
Sbjct: 125  TFYIKFTDIYVGSPCRADEPQDVTPDATPSDVSPHECRLRDTTYAAPILVNFEYIRGRQR 184

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                   +GR+PIML+S +C L N TP+++    E P + GGYFIV G EK+        
Sbjct: 185  VTRKGVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKV-------- 236

Query: 218  RNHPIAIKRNAWKNRGLLFSD-------LGVYIRSVKRDESA-----------TNNVLH- 258
                I ++    KNR ++ +D         V   S +R   +            +NVL  
Sbjct: 237  ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDKLYVKHNVLSE 292

Query: 259  ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFG--- 300
                V    A  + + ++ + L+  + SL+++            GI+TQ  +  + G   
Sbjct: 293  DIPIVILLRAMGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARI 352

Query: 301  QIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQG 355
            +I +++  Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++      
Sbjct: 353  KINRKQSSYRRTHIQEAVE----AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKND 408

Query: 356  MVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSIE 407
               +D  D +  + +   G L    +  L KK     K     VL + +    F A ++ 
Sbjct: 409  PSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVM 468

Query: 408  SAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQE 462
            S  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F++
Sbjct: 469  SMHSNHITQGMNRAISTGNWSLKRFRMERAG---VTHVLSRLSYIAALGMMTRISSQFEK 525

Query: 463  MRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQIP 515
             R  S PR L+   +G +CP  TP+G  CGL      + H+TTN    E  P K L  + 
Sbjct: 526  TRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTN---DEEGPIKNLVFML 582

Query: 516  SV--LVSLGMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
                +++LG   L TP   +I      + L  R   Y L+        +LR +  + E +
Sbjct: 583  GAEDIMALGGKQLYTPGSYTISINGTPIALTRR-PKYFLNAFR-----RLRRMGRISEFV 636

Query: 573  PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----------------------- 609
                  +Y+   +        +++ T  GR+ RP++                        
Sbjct: 637  S-----IYINHHQ------CAVHIATDDGRICRPLIVVENGRSLVTARHLDKLRDGTMQF 685

Query: 610  ---LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
               LA G +E++   E+    I +  K+     TTH E+     L  +A LIP P  NQS
Sbjct: 686  DDFLAQGLVEYLDVNEENDSLIALYEKD-ITDTTTHLEIEPFTVLGAVAGLIPYPHHNQS 744

Query: 667  PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
            PRN YQC MGKQ +G    N   +    LY +  P  P  +    + +  D  P G NA+
Sbjct: 745  PRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELVKYDQLPAGQNAM 804

Query: 727  VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
            VAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S  N  GT+           
Sbjct: 805  VAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSN--GTK----------- 851

Query: 787  QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAKLNERDPM 845
                               D+     Y    P  K AL   L  DGL  VG ++N  +  
Sbjct: 852  -------------------DRLNPPTYENGAPIRKHAL---LEADGLAAVGEQVNAGE-- 887

Query: 846  YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP------NCAYIG---YRIQ 896
                       V    S  E+  +  +   +G     + TP      + AYI    Y +Q
Sbjct: 888  -----------VYINKSTPEQSNLSGIGSDAGRPVQYTPTPMTYKLHDPAYIDKVMYSVQ 936

Query: 897  RN--------------PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
             N              P VGDKF+SR GQKG+  +     D+PFTD+G+ PDI+ NPHGF
Sbjct: 937  ENENQLVKVLVRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDAGINPDIIMNPHGF 996

Query: 943  PSRMTIG 949
            PSRMT+G
Sbjct: 997  PSRMTVG 1003



 Score = 48.5 bits (114), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1037 ILIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1096

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1097 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1139

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1140 DVCEQCGFMGY 1150


>gi|71026390|ref|XP_762870.1| DNA-directed RNA polymerase III subunit [Theileria parva strain
            Muguga]
 gi|68349822|gb|EAN30587.1| DNA-directed RNA polymerase III subunit, putative [Theileria parva]
          Length = 1244

 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 242/1001 (24%), Positives = 424/1001 (42%), Gaps = 235/1001 (23%)

Query: 125  HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK----EVGRVPIMLKSKRCHLR 180
            H  K  P   R     YS P  VT+ +  D     TFT+    E+GR+P+ML+S  C L 
Sbjct: 103  HVFKLTPQLCRIRDFTYSAPILVTIDYFRDY----TFTRKENLEIGRIPVMLRSCICFLS 158

Query: 181  -----------------NLTPAQLIERGEHPD---------------------EWGGYFI 202
                             N +   +    + PD                     + GGYFI
Sbjct: 159  SDSESNSDHDSSGLPEYNSSKKSMKNNFDIPDGLSKEDRESFYKSYMLDECPYDPGGYFI 218

Query: 203  VGGHEKLVRL---LINNRRNHPIAIKRNAW----------KNR-GLLFSDLGVYIR--SV 246
            + G EK++ +   L  +R    + +K+N            K+R  +++ +  +Y+R  S 
Sbjct: 219  IKGVEKVILMQEQLSKSRIIVEMDVKKNICATVTSATAESKSRTAVVYKNSQLYLRINSF 278

Query: 247  KRDE-----------SATNNVLHFVTNGSARFMFSHR---------KSMCLLGMMQSLHE 286
              D               + ++  ++N    F  S+            +  +  +  L+ 
Sbjct: 279  TDDVPLCIVLKAMGIETDHEIIQLISNSPTTFKNSNNLTTPSSNLPNGLDYITFLNDLYN 338

Query: 287  EGIHTQHDSKVFFGQIFKEKL-----------------QYDLRHLNEVEICDYMLTNCIL 329
            E I+++ D+ ++ G+  + ++                 Q  L   +++ +   +L++  +
Sbjct: 339  EDINSRLDALMYIGKKIRPRVLGKGFFSSNKDRAPKSKQMILEDTHDI-LSRVLLSHIPM 397

Query: 330  PHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLL 381
                D+  K   LS M  ++ +VV  +  LD +D    + +   G +        Y + L
Sbjct: 398  KDCRDFSGKIKTLSLMAHRVLNVVNNVEPLDDKDHYGNKRLELAGQMISILFEDFYKKFL 457

Query: 382  KKEKSGTSAVLKE----------------SDIYAAFRASSIESAMTNFLATGNVSAGKNS 425
               K    ++L +                 DI+       I + M N +ATGN +  +  
Sbjct: 458  SNMKKSIESILVKYLEANPNPAKGENSNFPDIFGLMPTDIITNGMQNAIATGNWNIKRFR 517

Query: 426  TLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVH 483
                M+ SG   +++ ++R+ Y+S    + +  S F++ R  S PR L+   +G +CP  
Sbjct: 518  ----MEKSG---VSQVLSRLSYISSIGMMTKTDSQFEKGRKVSGPRALQPSQFGILCPCD 570

Query: 484  TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--------QSIPE 535
            TP+G  CGL+ +L+    ++  +P+ VL    ++L +LG+ P+  +         +   E
Sbjct: 571  TPEGESCGLVKNLSLMTHVTSDVPTPVLE---TLLFTLGVEPIDTLSSHDMFNPWKGTSE 627

Query: 536  Q------ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMG 589
            +      A +V+L+G ++G  + + A  LV  +  L+  G  +      VY    +    
Sbjct: 628  KCDNLLNARLVLLNGILLG--IHRNAKFLVNSIIKLRRRG--LINMFVSVYENSQQNQ-- 681

Query: 590  LYPGLYLFTGPGRMLRPVMNLAA--------------------------GNIEWIGTFEQ 623
                +++ +  GR+ RP++ +                            G +EWI   E+
Sbjct: 682  ----VHISSDGGRLCRPLIVVQNSVPRLTDELVQQLVENKIKMEYLFNNGILEWIDVNEE 737

Query: 624  VFMDICITMKEA-YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
               ++ I M+E     +TTH E+S    L  +A LIP P+ NQSPRN YQC MGKQ++G+
Sbjct: 738  --NNLLIVMREKDITNLTTHLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGS 795

Query: 683  PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
               N   +    ++ +     P         ++ D  P G NAIVAV+SY GY++EDA+I
Sbjct: 796  IGYNQFQRCDTVVHLMNYTQQPLVTTKTIQLVNFDKLPAGQNAIVAVMSYQGYEIEDAII 855

Query: 743  LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            LNK+S +RGFA     + +  E+ S     G  T  +G + S                  
Sbjct: 856  LNKASIDRGFARCYTLRRLTCEITS-----GNATSLNGFNPS------------------ 892

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK-----------LNERDPMYSYWKE 851
                K Q KD    +     + +++ P G V +  K           +N +    +    
Sbjct: 893  ----KSQNKDSDSNNEFVIGVGEQVSP-GQVLISTKAPPTDFTTNGSMNGKGTDKNQKTG 947

Query: 852  SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY-IGYRIQRNPTVGDKFASRAG 910
            ++++Y+  +Y+     C++ V ++  +        N  Y I  R  R P +GDKF+SR G
Sbjct: 948  NDDKYIVNKYNLNTGGCIDRVILTENYNG------NKMYKIMVRQSRPPEIGDKFSSRHG 1001

Query: 911  QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            QKG+  +    ED+PFT+SG+VPD++ NPHGFPSRMT+G L
Sbjct: 1002 QKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKL 1042



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G++  G E +YSG+ G+ +   IF G ++YQRL+HMV+DK   +    R P  + 
Sbjct: 1089 ILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPRQPITRQ 1148

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G   + VE + +SS      
Sbjct: 1149 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GSSNLLVERLMLSSDVF-NI 1191

Query: 883  SVTPNCAYIGY 893
             V  +C ++GY
Sbjct: 1192 EVCSSCGFMGY 1202


>gi|225678942|gb|EEH17226.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1232

 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 242/928 (26%), Positives = 389/928 (41%), Gaps = 187/928 (20%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N + A++   
Sbjct: 201  PNECRLRDMTYASPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLL 260

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E P + GGYFIV G EK+            I ++    KNR ++ +DL   I       
Sbjct: 261  QECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDLKKEIVQASVTS 308

Query: 251  SATNN--------------VLHFVTNGSARFMF--------SHRKSMCLLGMMQSLHEE- 287
            S+                 V H V N     +         S ++ + L+  + S ++E 
Sbjct: 309  SSNERKSKSYIILKKERIYVRHNVLNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQED 368

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                       GI+TQH +  + G   +I ++   + +   N V+     +++ I+ H+ 
Sbjct: 369  FAINFEEAVKLGIYTQHQALEYIGSRIKINRKPNNFGVIRRNYVQEAIEAISSVIISHVV 428

Query: 334  ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-- 383
                ++  K L ++HM  ++         +D  D +  + +   G L    +  L KK  
Sbjct: 429  VENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFQ 488

Query: 384  --EKSGTSAVLKES------DIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K     VLK+       D Y   A   + I   M   ++TGN S  +      M+ +
Sbjct: 489  FDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMNRAISTGNWSLKRFR----MERA 544

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 545  G---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 601

Query: 492  L------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
            L      + H+TTN +  E +   + A     + ++G   L        + A +V L+G 
Sbjct: 602  LVKNLALMTHITTNDE-EEPVRKLIFALGAEDVQTVGGRELHG------QGAYIVFLNGS 654

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
             +   L +     +   R L+  G ++ + +  V++   ++       +++ T  GR+ R
Sbjct: 655  PIA--LTRRPKFFLHSFRRLRRTG-RVSEFIS-VFINHHQRA------VHIATDDGRICR 704

Query: 606  PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            P++                           LA G +E++   E+   +I +   +     
Sbjct: 705  PLIIVEDGKSKVQAHHLRALRSGSMEFDDFLAHGLVEYLDCNEENDSNIAVYEDDIVDS- 763

Query: 640  TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY + 
Sbjct: 764  TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMV 823

Query: 700  TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
             P  P  +    + +  D  P G  A VAV+SY+GYD+EDA++LNK S +RGF    +F+
Sbjct: 824  YPQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFR 883

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
                 L+S  N  GT+                              DK +  D     P 
Sbjct: 884  KYSTNLKSYSN--GTK------------------------------DKLKGPDRENGLPV 911

Query: 820  NK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---VTCRYSGK----------- 864
             K AL D    DGL  VG K+N  + +Y      EN     +T   +G+           
Sbjct: 912  RKHALLDN---DGLAAVGEKVNHGE-VYINKVTPENALSSGITGSDAGRPITYIPSPQTY 967

Query: 865  ---EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
               +   ++ V +SS   E   +      +  R  R P VGDKF+SR GQKG+  +    
Sbjct: 968  KLPDPSYIDKVMISSTEAENQLIK-----VQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQ 1022

Query: 922  EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             D+PF+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 1023 ADMPFSDLGIVPDIIMNPHGFPSRMTVG 1050



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 17/147 (11%)

Query: 747  SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
            SY   F    + +   + ++ G++Y G + + SG+ G  + A +F G ++YQ+L+HMV D
Sbjct: 1068 SYGTAFGGSPVEEMSAVLVKHGFSYGGKDCLTSGITGESLPAYVFMGPIYYQKLKHMVQD 1127

Query: 807  KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEE 866
            K  ++    R    +   +    DG + +G    ERD + +Y              G  +
Sbjct: 1128 KMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQ 1171

Query: 867  MCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            + +E + +SS   E   V  +C ++GY
Sbjct: 1172 LLLERLMISSDQYE-VDVCESCGFMGY 1197


>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1208

 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 243/970 (25%), Positives = 424/970 (43%), Gaps = 155/970 (15%)

Query: 72   HIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEPKVPAGPVGIHF-NKY 129
            HI S+++ ++  +   VE  + I  ++ +   +K   +  A        G  G+ F +  
Sbjct: 105  HIDSYNYFVEVQMKKIVESSSTIRSDVDHNFYIKFTDIYVASPRRADEQGDGGLDFESTI 164

Query: 130  YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
             P E R   + Y+ P  V   +    +        +GR+P+ML+S +C L N TPAQ+  
Sbjct: 165  TPQECRLRDTTYAAPILVDFEYVRGRQRVIRRAVPIGRIPMMLRSSKCVLSNKTPAQMSV 224

Query: 190  RGEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRGLL 235
              E P + GGYF+V G EK++ +   L  NR      P        +    N  K++  +
Sbjct: 225  LNECPLDPGGYFVVNGTEKVILVQEQLSKNRIIVETDPKKDIVQASVTSSSNERKSKSYI 284

Query: 236  FSDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEG------ 288
             S  G +Y++      +  N  +  V    A  + + ++ M ++    +L+++       
Sbjct: 285  VSKKGRLYVK-----HNVLNEDIPIVILLKAMGIHTDKEMMQMVTGDDALYQDDFAINFE 339

Query: 289  ------IHTQHDSKVFFG---QIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
                  ++TQ  +  + G   +I +++  Y   H+ E VE     + + I+ H++    +
Sbjct: 340  EAINVDVYTQQQALDWIGCRIKINRKQAAYRKTHVQEAVE----AIASVIISHIEVKDMN 395

Query: 335  YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS----LYLQLLKK----EKS 386
            +  K + ++HM  ++         +D  D +  + +   G     L+  L KK     K 
Sbjct: 396  FRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLELAGQMLALLFEDLFKKFCFDIKM 455

Query: 387  GTSAVLKESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENI 442
                VL + +    F A +I +   N +  G    +S G  S  +  M+ +G   +   +
Sbjct: 456  NIDKVLNKRNRAEQFDAWTIVTMHGNHITQGMNRAISTGNWSLKRFRMERAGVTHV---L 512

Query: 443  NRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG------LLN 494
            +R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG      L+ 
Sbjct: 513  SRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMT 572

Query: 495  HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILD 552
            H+TTN    E  P      + +++  LG+  ++ V   Q     A  + ++G   G  L 
Sbjct: 573  HITTN---DEEGP------VRNLIFMLGVEDISSVGGQQLYARGAYTISINGTPTG--LT 621

Query: 553  QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN--- 609
            +   S +   R L+ +G ++ + + I Y+   ++       +++ T  GR+ RP++    
Sbjct: 622  RRPKSFLNAFRRLRRMG-RVSEFVSI-YINHHQR------AVHVATDDGRICRPLIVVEN 673

Query: 610  -----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
                                   LA G +E++   E+    I I  K+      TH E+ 
Sbjct: 674  GKSLVGAQHLEKLRDGKMEFDDFLAQGLVEYLDVNEENDSYIAIYEKD-ITNTHTHLEIE 732

Query: 647  KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
                L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  
Sbjct: 733  PFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVYPQKPMV 792

Query: 707  RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
            +    +    D  P G NA VAV+SY+GYD+EDA++LNK S +RGF    +F+     L+
Sbjct: 793  KSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTTLK 852

Query: 767  SGYNYYGTETMYSGV--DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            S Y     +++ +    +G+ ++            +  MV++    + Y  +      ++
Sbjct: 853  S-YPNGAKDSLRAPTFENGAPIRKHALLESDGLAAVGEMVNN---GETYINK--VTPRVQ 906

Query: 825  DKL---GPD--GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
            + L   GPD  G   + A +N + P  SY     ++ +     G+ ++   + R +    
Sbjct: 907  NSLGFSGPDIGGGDVLEAPMNYKLPDPSYI----DKVLVSATEGETQLIKVLTRQT---- 958

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
                             R P VGDKF+SR GQKG+  +     D+PF+D G+ PDI+ NP
Sbjct: 959  -----------------RRPEVGDKFSSRHGQKGVVGIIADQADMPFSDQGINPDIIMNP 1001

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 1002 HGFPSRMTVG 1011



 Score = 43.5 bits (101), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++         + 
Sbjct: 1045 ILIDKGFSYGGKDYLTSGITGEPLPFYVFTGPIYYQKLKHMVQDKMHSRAKGPTATLTRQ 1104

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    +G + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1105 PTEGRSRNGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-V 1147

Query: 883  SVTPNCAYIGY 893
             +   C ++GY
Sbjct: 1148 DICEKCGFMGY 1158


>gi|261194511|ref|XP_002623660.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239588198|gb|EEQ70841.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1204

 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 243/928 (26%), Positives = 394/928 (42%), Gaps = 187/928 (20%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N + A++   
Sbjct: 158  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLL 217

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E P + GGYFIV G EK+            I ++    KNR ++ +DL   I       
Sbjct: 218  HECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDLKKEIVQASVTS 265

Query: 251  SAT------------------NNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE- 287
            S+                   +NVL+     V    A  + S ++ + L+  + S ++E 
Sbjct: 266  SSNERKSKSYIIMKKDRIYMRHNVLNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQED 325

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                       GI+TQH +  + G   +I ++   + +   N V+     +++ I+ H+ 
Sbjct: 326  FSINFEEAVKLGIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVV 385

Query: 334  ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-- 383
                ++  K L ++HM  ++         +D  D +  + +   G L    +  L KK  
Sbjct: 386  VENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQ 445

Query: 384  --EKSGTSAVLKES------DIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K     VLK+       D Y   A   + I   M   ++TGN S  +      M+ +
Sbjct: 446  FDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMNRAISTGNWSLKRFR----MERA 501

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 502  G---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 558

Query: 492  L------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
            L      + H+TTN +  E +   + A     + ++G   L        + A ++ L+G 
Sbjct: 559  LVKNLALMTHITTNDE-EEPVRKLIFALGAEDVQTVGGRELHG------QGAYIIFLNGS 611

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
             +   L +     +   R L+  G ++ + +  V++   +        +++ T  GR+ R
Sbjct: 612  PIA--LTRRPKFFLNSFRRLRRTG-RVSEFIS-VFINHHQNA------VHIATDDGRICR 661

Query: 606  PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            P++                           LA G +E++   E+    I +  +E     
Sbjct: 662  PLIVVEDGKSKVTKSHLWALRSGSMEFDDFLAHGLVEYLDCNEENDSYIAV-YEEDITDS 720

Query: 640  TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY + 
Sbjct: 721  TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMV 780

Query: 700  TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
             P  P  +    + +  D  P G +A VAV+SY+GYD+EDA++LNKSS +RGF    +F+
Sbjct: 781  YPQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFR 840

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
                 L+S  N  GT+                              DK +  D     P 
Sbjct: 841  KYSTNLKSYSN--GTK------------------------------DKLKGPDRENGLPI 868

Query: 820  NK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---VTCRYSGK----------- 864
             K AL D    DGL  VG K+N+ + +Y      EN     +T   +G+           
Sbjct: 869  RKHALLDS---DGLAAVGEKVNQGE-VYINKVTPENALSSGITGSDAGRPIAYIPSPQTY 924

Query: 865  ---EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
               +   ++ V +S+   E   +      +  R  R P VGDKF+SR GQKG+  +    
Sbjct: 925  KLPDPSYIDKVMISATEAENQLIK-----VQTRQTRVPEVGDKFSSRHGQKGVVGIIAEY 979

Query: 922  EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             D+PF+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 980  ADMPFSDLGIVPDIIMNPHGFPSRMTVG 1007



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1024 FGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQ 1083

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1084 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1127

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  +C ++GY
Sbjct: 1128 QLLLERLMISSDRHE-VDVCESCGFMGY 1154


>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1205

 Score =  229 bits (585), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 264/1026 (25%), Positives = 425/1026 (41%), Gaps = 209/1026 (20%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI S+++ ++  L   V+  A I  ++   
Sbjct: 69   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDV-DP 126

Query: 102  TLKLNIVKAAISEPKVPAGPVGIHFNK---YYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
               +      +  P+        +FN      P E R     Y+ P  V   +    +  
Sbjct: 127  NFYIRFHDIYLGTPRRADEEQDSNFNAASTITPNECRLRDMTYASPILVDFEYVRGRQRV 186

Query: 159  GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
                  +GR+P+ML+S +C L N + A++    E P + GGYFIV G EK+         
Sbjct: 187  KRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGTEKV--------- 237

Query: 219  NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNN--------------VLHFVTNGS 264
               I ++    KNR ++ +DL   I       S+                 V H V N  
Sbjct: 238  ---ILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYIILKKERIYVRHNVLNED 294

Query: 265  ARFMF--------SHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFG---Q 301
               +         S ++ + L+  + S ++E            GI+TQH +  + G   +
Sbjct: 295  VPIVILLKAMGIQSDKEMLLLVAGIDSTYQEDFAINFEEAVKLGIYTQHQALEYIGSRIK 354

Query: 302  IFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMV 357
            I ++   + +   N V+     +++ I+ H+     ++  K L ++HM  ++        
Sbjct: 355  INRKPNNFGVIRRNYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPS 414

Query: 358  QLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKES------DIYA--AF 401
             +D  D +  + +   G L    +  L KK     K     VLK+       D Y   A 
Sbjct: 415  LVDDRDYVGNKRLELAGQLLSLLFEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAI 474

Query: 402  RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYF 460
              + I   M   ++TGN S  +      M+ +G   +   ++R+ Y++    + R  S F
Sbjct: 475  HGNHITQGMNRAISTGNWSLKRFR----MERAG---VTHVLSRLSYIAALGMMTRISSQF 527

Query: 461  QEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQ 513
            ++ R  S PR L+   +G +CP  TP+G  CGL      + H+TTN    E  P + L  
Sbjct: 528  EKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTN---DEEEPVRKL-- 582

Query: 514  IPSVLVSLGMLPLTPVIQSIPEQAL------MVMLDGRIVGYILDQIATSLVPKLRMLKI 567
                + +LG       +Q++  + L      +V L+G  +   L +     +   R L+ 
Sbjct: 583  ----IFALG----AEDVQTVGGRELHGQGTYIVFLNGSPIA--LTRRPKFFLHSFRRLRR 632

Query: 568  VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------------ 609
             G ++ + +  V++   ++       +++ T  GR+ RP++                   
Sbjct: 633  TG-RVSEFIS-VFINHHQRA------VHIATDDGRICRPLIIVEDGKSRVQARHLRALRS 684

Query: 610  --------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                    LA G +E++   E+   +I +   +     TTH E+     L  +A LIP P
Sbjct: 685  GSMEFDDFLAHGLVEYLDCNEENDSNIAVYENDIVDS-TTHLEIEPFTILGAVAGLIPYP 743

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
              NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    + +  D  P 
Sbjct: 744  HHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIELIKYDRLPA 803

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
            G  A VAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S  N  GT+      
Sbjct: 804  GQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYSTNLKSYSN--GTK------ 855

Query: 782  DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAKLN 840
                                    DK +  D     P  K AL D    DGL  VG K+N
Sbjct: 856  ------------------------DKLKGPDRENGLPVRKHALLDN---DGLAAVGEKVN 888

Query: 841  ERDPMYSYWKESENRY---VTCRYSGK--------------EEMCVEVVRMSSGFTEGGS 883
            + + +Y      EN     +T   +G+              +   ++ V +SS   E   
Sbjct: 889  QGE-VYINKVTPENALSSGITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAENQL 947

Query: 884  VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
            +      +  R  R P VGDKF+SR GQKG+  +     D+PF+D G+VPDI+ NPHGFP
Sbjct: 948  IK-----VQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFSDLGIVPDIIMNPHGFP 1002

Query: 944  SRMTIG 949
            SRMT+G
Sbjct: 1003 SRMTVG 1008



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 17/147 (11%)

Query: 747  SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
            SY   F    + +   I ++ G++Y G + + SG+ G  + A +F G ++YQ+L+HMV D
Sbjct: 1026 SYGTAFGGSPVEEMSAILVKHGFSYGGKDCLTSGITGESLPAYVFMGPIYYQKLKHMVQD 1085

Query: 807  KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEE 866
            K  ++    R    +   +    DG + +G    ERD + +Y              G  +
Sbjct: 1086 KMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQ 1129

Query: 867  MCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            + +E + +SS   E   V  +C ++GY
Sbjct: 1130 LLLERLMISSDQYE-VDVCESCGFMGY 1155


>gi|70990294|ref|XP_749996.1| DNA-directed RNA polymerase III, beta subunit [Aspergillus fumigatus
            Af293]
 gi|66847628|gb|EAL87958.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus Af293]
 gi|159130477|gb|EDP55590.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus A1163]
          Length = 1200

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 263/1018 (25%), Positives = 426/1018 (41%), Gaps = 196/1018 (19%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI S+++ ++  L   VE  + I  +I   
Sbjct: 67   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDI-DH 124

Query: 102  TLKLNIVKAAISEPKVPAGPVGIHFN----KYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            T  +      +  P     P  +  +       P E R   + Y+ P  V   +    + 
Sbjct: 125  TFYIKFTDIYVGSPCRADEPQDVTPDATPSDVSPHECRLRDTTYAAPILVNFEYIRGRQR 184

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                   +GR+PIML+S +C L N TP+++    E P + GGYFIV G EK+        
Sbjct: 185  VTRKGVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKV-------- 236

Query: 218  RNHPIAIKRNAWKNRGLLFSD-------LGVYIRSVKRDESA-----------TNNVLH- 258
                I ++    KNR ++ +D         V   S +R   +            +NVL  
Sbjct: 237  ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDKLYVKHNVLSE 292

Query: 259  ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFG--- 300
                V    A  + + ++ + L+  + SL+++            GI+TQ  +  + G   
Sbjct: 293  DIPIVILLRAMGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDWIGARI 352

Query: 301  QIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQG 355
            +I +++  Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++      
Sbjct: 353  KINRKQSSYRRTHIQEAVE----AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKND 408

Query: 356  MVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSIE 407
               +D  D +  + +   G L    +  L KK     K     VL + +    F A ++ 
Sbjct: 409  PSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTVM 468

Query: 408  SAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQE 462
            S  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F++
Sbjct: 469  SMHSNHITQGMNRAISTGNWSLKRFRMERAG---VTHVLSRLSYIAALGMMTRISSQFEK 525

Query: 463  MRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL 521
             R  S PR L+   +G +CP  TP+G  CGL+ +L     I+       +  +  +L + 
Sbjct: 526  TRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPIKNLVFMLGAE 585

Query: 522  GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYL 581
             ++ L      IP  +  + ++G  +   L +     +   R L+ +G +I + + I Y+
Sbjct: 586  DIMALGGKQLYIP-GSYTISINGTPIA--LTRRPKYFLNAFRRLRRMG-RISEFVSI-YI 640

Query: 582  KRPEKGMGLYPGLYLFTGPGRMLRPVMN--------------------------LAAGNI 615
               +        +++ T  GR+ RP++                           LA G +
Sbjct: 641  NHHQ------CAVHIATDDGRICRPLIVVENGRSLVKDHHLEKLRDGTMQFDDFLAQGLV 694

Query: 616  EWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
            E++   E+    I +  K+     TTH E+     L  +A LIP P  NQSPRN YQC M
Sbjct: 695  EYLDVNEENDSLIALYEKD-ITDTTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM 753

Query: 676  GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGY 735
            GKQ +G    N   +    LY +  P  P  +    + +  D  P G NA+VAV+SY+GY
Sbjct: 754  GKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELVKYDQLPAGQNAMVAVMSYSGY 813

Query: 736  DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVV 795
            D+EDA++LNK S +RGF    +F+     L+S  N  GT+                    
Sbjct: 814  DIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSN--GTK-------------------- 851

Query: 796  HYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN 854
                      D+     Y    P  K AL   L  DGL  VG ++N  +           
Sbjct: 852  ----------DRLNPPTYENGAPIRKHAL---LEADGLAAVGEQVNAGE----------- 887

Query: 855  RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP------NCAYIG---YRIQRN------- 898
              V    S  E+  +  +   +G     + TP      + AYI    Y +Q N       
Sbjct: 888  --VYINKSTPEQSNLSGIGSDAGRPVQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKV 945

Query: 899  -------PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
                   P VGDKF+SR GQKG+  +     D+PFTDSG+ PDI+ NPHGFPSRMT+G
Sbjct: 946  LVRQTRRPEVGDKFSSRHGQKGVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVG 1003



 Score = 48.1 bits (113), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    +   
Sbjct: 1039 IDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPT 1098

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    DG + +G    ERD + +Y              G  ++ +E + +SS   E   V
Sbjct: 1099 EGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-IDV 1141

Query: 885  TPNCAYIGY 893
               C ++GY
Sbjct: 1142 CEQCGFMGY 1150


>gi|226287945|gb|EEH43458.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1209

 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 242/928 (26%), Positives = 389/928 (41%), Gaps = 187/928 (20%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N + A++   
Sbjct: 201  PNECRLRDMTYASPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLL 260

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E P + GGYFIV G EK+            I ++    KNR ++ +DL   I       
Sbjct: 261  QECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDLKKEIVQASVTS 308

Query: 251  SATNN--------------VLHFVTNGSARFMF--------SHRKSMCLLGMMQSLHEE- 287
            S+                 V H V N     +         S ++ + L+  + S ++E 
Sbjct: 309  SSNERKSKSYIILKKERIYVRHNVLNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQED 368

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                       GI+TQH +  + G   +I ++   + +   N V+     +++ I+ H+ 
Sbjct: 369  FAINFEEAVKLGIYTQHQALEYIGSRIKINRKPNNFGVIRRNYVQEAIEAISSVIISHVV 428

Query: 334  ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-- 383
                ++  K L ++HM  ++         +D  D +  + +   G L    +  L KK  
Sbjct: 429  VENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFQ 488

Query: 384  --EKSGTSAVLKES------DIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K     VLK+       D Y   A   + I   M   ++TGN S  +      M+ +
Sbjct: 489  FDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMNRAISTGNWSLKRFR----MERA 544

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 545  G---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 601

Query: 492  L------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
            L      + H+TTN +  E +   + A     + ++G   L        + A +V L+G 
Sbjct: 602  LVKNLALMTHITTNDE-EEPVRKLIFALGAEDVQTVGGRELHG------QGAYIVFLNGS 654

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
             +   L +     +   R L+  G ++ + +  V++   ++       +++ T  GR+ R
Sbjct: 655  PIA--LTRRPKFFLHSFRRLRRTG-RVSEFIS-VFINHHQRA------VHIATDDGRICR 704

Query: 606  PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            P++                           LA G +E++   E+   +I +   +     
Sbjct: 705  PLIIVEDGKSKVQAHHLRALRSGSMEFDDFLAHGLVEYLDCNEENDSNIAVYEDDIVDS- 763

Query: 640  TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY + 
Sbjct: 764  TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMV 823

Query: 700  TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
             P  P  +    + +  D  P G  A VAV+SY+GYD+EDA++LNK S +RGF    +F+
Sbjct: 824  YPQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFR 883

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
                 L+S  N  GT+                              DK +  D     P 
Sbjct: 884  KYSTNLKSYSN--GTK------------------------------DKLKGPDRENGLPV 911

Query: 820  NK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---VTCRYSGK----------- 864
             K AL D    DGL  VG K+N  + +Y      EN     +T   +G+           
Sbjct: 912  RKHALLDN---DGLAAVGEKVNHGE-VYINKVTPENALSSGITGSDAGRPITYIPSPQTY 967

Query: 865  ---EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
               +   ++ V +SS   E   +      +  R  R P VGDKF+SR GQKG+  +    
Sbjct: 968  KLPDPSYIDKVMISSTEAENQLIK-----VQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQ 1022

Query: 922  EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             D+PF+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 1023 ADMPFSDLGIVPDIIMNPHGFPSRMTVG 1050


>gi|239613518|gb|EEQ90505.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357033|gb|EGE85890.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1228

 Score =  229 bits (584), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 243/928 (26%), Positives = 394/928 (42%), Gaps = 187/928 (20%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N + A++   
Sbjct: 182  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLL 241

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E P + GGYFIV G EK+            I ++    KNR ++ +DL   I       
Sbjct: 242  HECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDLKKEIVQASVTS 289

Query: 251  SAT------------------NNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE- 287
            S+                   +NVL+     V    A  + S ++ + L+  + S ++E 
Sbjct: 290  SSNERKSKSYIIMKKDRIYMRHNVLNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQED 349

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                       GI+TQH +  + G   +I ++   + +   N V+     +++ I+ H+ 
Sbjct: 350  FSINFEEAVKLGIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVV 409

Query: 334  ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-- 383
                ++  K L ++HM  ++         +D  D +  + +   G L    +  L KK  
Sbjct: 410  VENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQ 469

Query: 384  --EKSGTSAVLKES------DIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K     VLK+       D Y   A   + I   M   ++TGN S  +      M+ +
Sbjct: 470  FDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMNRAISTGNWSLKRFR----MERA 525

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 526  G---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 582

Query: 492  L------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
            L      + H+TTN +  E +   + A     + ++G   L        + A ++ L+G 
Sbjct: 583  LVKNLALMTHITTNDE-EEPVRKLIFALGAEDVQTVGGRELHG------QGAYIIFLNGS 635

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
             +   L +     +   R L+  G ++ + +  V++   +        +++ T  GR+ R
Sbjct: 636  PIA--LTRRPKFFLNSFRRLRRTG-RVSEFIS-VFINHHQNA------VHIATDDGRICR 685

Query: 606  PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            P++                           LA G +E++   E+    I +  +E     
Sbjct: 686  PLIVVEDGKSKVTKSHLWALRSGSMEFDDFLAHGLVEYLDCNEENDSYIAV-YEEDITDS 744

Query: 640  TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY + 
Sbjct: 745  TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMV 804

Query: 700  TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
             P  P  +    + +  D  P G +A VAV+SY+GYD+EDA++LNKSS +RGF    +F+
Sbjct: 805  YPQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFR 864

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
                 L+S  N  GT+                              DK +  D     P 
Sbjct: 865  KYSTNLKSYSN--GTK------------------------------DKLKGPDRENGLPI 892

Query: 820  NK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---VTCRYSGK----------- 864
             K AL D    DGL  VG K+N+ + +Y      EN     +T   +G+           
Sbjct: 893  RKHALLDS---DGLAAVGEKVNQGE-VYINKVTPENALSSGITGSDAGRPIAYIPSPQTY 948

Query: 865  ---EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
               +   ++ V +S+   E   +      +  R  R P VGDKF+SR GQKG+  +    
Sbjct: 949  KLPDPSYIDKVMISATEAENQLIK-----VQTRQTRVPEVGDKFSSRHGQKGVVGIIAEY 1003

Query: 922  EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             D+PF+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 1004 ADMPFSDLGIVPDIIMNPHGFPSRMTVG 1031



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1048 FGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQ 1107

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1108 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1151

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  +C ++GY
Sbjct: 1152 QLLLERLMISSDRHE-VDVCESCGFMGY 1178


>gi|367035314|ref|XP_003666939.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
           42464]
 gi|347014212|gb|AEO61694.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
           42464]
          Length = 1155

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 238/923 (25%), Positives = 376/923 (40%), Gaps = 162/923 (17%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           ++  P E R     Y+ P  V + +S D K        + R+P+MLKS +C L   T AQ
Sbjct: 102 DEVTPMECRLRDMTYAAPVVVDIVYSRDRKKIVRKDIPLCRIPVMLKSAKCCLSGATNAQ 161

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRL---LINNR-------------------------R 218
           +    E P + GGYFI+ G EK++ +   L  NR                         +
Sbjct: 162 MEIMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKTGGVSASVTSSTHERKSK 221

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
            + I  K     N  +L   + + I        +   ++  V  G AR+          L
Sbjct: 222 TYVILKKDRIVLNHNVLVEPIPIVIVLKALGGLSDYEIMELVAGGDARYQDD------FL 275

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-----NEVEICDYMLTNCILPHLD 333
                  + G+ TQ  +  + G   K       R +     + VE     L N ++ H++
Sbjct: 276 INFDEATKAGVFTQQQALEYVGSRVKMGGPKKGRSMAAPRRSPVEEGLDALANVVVAHVE 335

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----- 384
               D++ K + ++ M  ++         +D  D +  + +   G L L LL ++     
Sbjct: 336 IQDLDFYPKAIYIAMMVRRVLMASHDPKLVDDRDFVGNKRLELAGQL-LSLLFEDMFKMF 394

Query: 385 ----KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFV 436
               K       K+ +  +A+      S+   ++  G   A ++    +    M  +G  
Sbjct: 395 VGSLKGNMEYFFKKPNRTSAYDPVGPISSQGQYITQGLNRAIQSGNWNVKRFNMNRAG-- 452

Query: 437 IMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL-- 492
            +   ++R+ Y++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL  
Sbjct: 453 -VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVK 511

Query: 493 ----LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
               + H+TTN +  E + + + + IP V   + M   T + +     + ++ L+G    
Sbjct: 512 NLALMTHITTNAE-EEPVKNWIFSLIPGV-EPIRMFTGTEMHRP---GSYIIHLNG--TP 564

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
           + L +       + + ++  G   P     V +   E     +  +++ T  GR+ RP +
Sbjct: 565 FALTRHPKQFAARFKTMRRRGHISP----FVGIHINEH----FSAIHIATDEGRICRPYI 616

Query: 609 NLAAGN--------------------------IEWIGTFEQVFMDICITMKEAYPGITTH 642
            +  G                           IE++   E+    I I  +E     TTH
Sbjct: 617 IVKDGKPRLKKEHLRLLQLGKATFDDFLKNSVIEYLDVNEENDALIAIR-EEDVNQSTTH 675

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P 
Sbjct: 676 MEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQ 735

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P         +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+   
Sbjct: 736 RPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYT 795

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            EL+   N  G +    G+                             KD  GR  A  A
Sbjct: 796 AELQQYPN--GRKDRLGGIQ----------------------------KDEEGRTIAKHA 825

Query: 823 LEDKLGPDGLVYVGAKLNERDPMY--------------SYWKESENRYVTCRYSGKEEMC 868
             DK   DGL  VG +++  + M               S     E R     Y   +   
Sbjct: 826 CLDK---DGLAVVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDEFRPAPINYRIPDPAY 882

Query: 869 VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
           ++ V +S+  TE  +       +  R  R P +GDKF+SR GQKG+  +    ED+PF+D
Sbjct: 883 IDKVMVSN--TEKNTA---IIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSD 937

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
           SGLVPDI+ NPHGFPSRMT+G L
Sbjct: 938 SGLVPDIIMNPHGFPSRMTVGKL 960



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 23/151 (15%)

Query: 750  RGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            R +  G  F+S  +E      +E G+++ G +   SG+ G   +A +F G ++YQRL+HM
Sbjct: 975  RDYGFGDAFRSHPVEEMGRVLIEHGFSWEGKDYFTSGITGEPHEAYLFNGPIYYQRLKHM 1034

Query: 804  VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
            V DK  ++    R    +   +    DG + +G    ERD + +Y              G
Sbjct: 1035 VQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------G 1078

Query: 864  KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
              ++ +E + +SS  T+   +   C  +GY+
Sbjct: 1079 ASQLLLERLMISSDGTQ-VDICERCGLLGYK 1108


>gi|224132576|ref|XP_002321356.1| predicted protein [Populus trichocarpa]
 gi|222868352|gb|EEF05483.1| predicted protein [Populus trichocarpa]
          Length = 1141

 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 255/1015 (25%), Positives = 417/1015 (41%), Gaps = 183/1015 (18%)

Query: 35  ILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLG--APHIASFDFMLDEGLDLAVEDIA 92
           ++++   +A  +K+  DK F   P    EFL   G    H+ SF++ ++ G+   V    
Sbjct: 3   LIDKQKHAAAPVKSAVDK-FQLLP----EFLKGRGLVKQHLDSFNYFINIGIKKIVRAND 57

Query: 93  PIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAW- 151
            I       +L L      I +P +    +     +  P   R + + Y+ P  V + + 
Sbjct: 58  RI-VSTVDPSLYLRFTDVKIGKPSMVVDAIS---EQITPHMCRLSDTTYAAPILVNIEYI 113

Query: 152 -SWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
               G+       +V  GR+PIML+S  C L     A+L   GE P + GGYF+V G EK
Sbjct: 114 SGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEK 173

Query: 209 LV---------RLLINNRR----NHPIAIKRNAWKNRGLLFSD-----LGVYIRSVKRDE 250
           ++         R++I+N +    N  +     A K++ ++  +     L +   + K   
Sbjct: 174 VILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPI 233

Query: 251 SATNNVLHFVTNGSARFMFSH--RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK---- 304
                 +   ++     M     R S  LL  ++     G++TQ  +  +   + K    
Sbjct: 234 MVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEAMVKRSTY 293

Query: 305 -----EKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
                EK    L  L +V I +  +        +++  K + ++ M  ++   +     +
Sbjct: 294 SSSSTEKENRALAILRDVFIANVPVRK------NNFRPKCIYVAVMLRRMMEALLNKDAM 347

Query: 360 DSEDSIMLQEIMTGGSLYLQLLKK---------EKSGTSAVLKES-----DIYAAFRASS 405
           D +D +  + +   G L   L +          +K+  + ++K++     D        S
Sbjct: 348 DDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVRDS 407

Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS-YFQEMR 464
           I + +   L+TGN    +      M   G   + + + R+ YM+    + R S  F++ R
Sbjct: 408 ITNGLERALSTGNWDVKRFR----MNRKG---VTQVLVRLSYMASLGHMTRISPQFEKSR 460

Query: 465 S-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQIPSV 517
             S PR L+   WG +CP  TP+G  CGL      + H+TT+ + S  I       +  +
Sbjct: 461 KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDL 520

Query: 518 LVSLGMLPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATSLVPKLRMLKIVGEKIPKSL 576
            +  G    TP        + +V+ +G I+G +   Q   + + KLR    +GE +    
Sbjct: 521 ELLSGEELHTP-------NSFLVIFNGLILGKHRRPQQFANAMRKLRRAGKIGEFVS--- 570

Query: 577 EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN--------------------------L 610
             V++   ++       +Y+ +  GR+ RP++                           L
Sbjct: 571 --VFVNEKQRA------VYIASDGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFL 622

Query: 611 AAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
             G IE++   E+    I +   EA P  TTH E+     L  +A LIP P  NQSPRN 
Sbjct: 623 HEGLIEYLDVNEENNALIALYEWEATPE-TTHIEIEPFTILGVVAGLIPYPHHNQSPRNT 681

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQC MGKQ MG    N   +    LY L  P  P       + +  D    G NA VAV+
Sbjct: 682 YQCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 741

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           SY+GYD+EDA+++NK+S +RGF    + K           Y  T   Y            
Sbjct: 742 SYSGYDIEDAIVMNKASLDRGFGRCIVLK----------KYTCTNQKYEN---------- 781

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL-----------VYVGAK- 838
                                D   R   N+  E  L  DGL           +Y+  + 
Sbjct: 782 ------------------GASDRILRPRKNEERERVLDDDGLAAPGEIIRHGDIYINKES 823

Query: 839 -LNERDPMYSYWKESENRYVTCR--YSGKE-EMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            +  R P+ S    ++ +Y  C   + G E E CV V R++    +  ++   C     R
Sbjct: 824 PIETRGPLKSAAALADVKYRPCAQIFKGTEGESCV-VDRVALCSDKNNNL---CIKYKIR 879

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             R P VGDKF+SR GQKG+C      ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 880 HTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVG 934



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G  +QA IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 981  VKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1040

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            D    +G + VG    E+D + +Y
Sbjct: 1041 DGRARNGGLRVGEM--EKDCLVAY 1062


>gi|194883820|ref|XP_001975995.1| GG20240 [Drosophila erecta]
 gi|190659182|gb|EDV56395.1| GG20240 [Drosophila erecta]
          Length = 1137

 Score =  229 bits (583), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 233/913 (25%), Positives = 383/913 (41%), Gaps = 166/913 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLL---INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++         ++L    N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM-----------MQSLHEE 287
            G Y     +  S T+++   V    A  + S ++   L+G+           +   +  
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLLDAYNL 282

Query: 288 GIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY--WDKFLCL 342
            + TQ  +  + G ++  ++ Q         E  + +LT  IL H+  D++    K + +
Sbjct: 283 KVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTT-ILAHVPVDNFNLQMKAIYV 341

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           S M  ++          D  D    + +   GSL    +  L K+         +K+   
Sbjct: 342 SLMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK 401

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S
Sbjct: 402 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 454

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 455 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVE 514

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSL 558
            +     P ++V+         ++ I E            +V ++G ++G  L+     L
Sbjct: 515 ER-----PVMIVAF-----NAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHL 562

Query: 559 VPKLRMLKIVGEKIPK-SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----- 609
           V  LR ++  G      S+   Y +R          +Y+ T  GR+ RP   V N     
Sbjct: 563 VRNLRYMRRKGRMGSYVSVHTSYTQR---------CIYIHTDGGRLCRPYVIVENRRPLV 613

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDF 650
                             L  G IE++   E+   D  I   E      TTH E+     
Sbjct: 614 KQHHLDELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEDQIEDRTTHLEIEPFTL 671

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +   
Sbjct: 672 LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKT 731

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++    
Sbjct: 732 IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR--- 788

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T                    + R+   + D    K  F          D L  D
Sbjct: 789 -YANQT--------------------FDRIMGPMKDALTNKVIFK--------HDVLDTD 819

Query: 831 GLVYVGAKLNER--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           G+V  G ++  +              +P+     +     V   Y G E   VE V +S+
Sbjct: 820 GIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYVERVMVSA 879

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              E   +      I  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++
Sbjct: 880 NAEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMI 934

Query: 937 FNPHGFPSRMTIG 949
            NPHGFPSRMT+G
Sbjct: 935 MNPHGFPSRMTVG 947



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF-----KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F     + +  ELE  G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 961  EGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGAPLEAYIYSGPVYYQKLKH 1020

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1021 MVQDKMHAR 1029


>gi|156098891|ref|XP_001615461.1| DNA-directed RNA polymerase, beta subunit [Plasmodium vivax Sal-1]
 gi|148804335|gb|EDL45734.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            vivax]
          Length = 1562

 Score =  229 bits (583), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 132/318 (41%), Positives = 174/318 (54%), Gaps = 18/318 (5%)

Query: 634  EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
            E  P    + EL +T FLS L +L P  D NQSPRN+YQCQM KQTMG   LN  Y    
Sbjct: 976  EQMPQKFEYMELKETSFLSFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFTN 1035

Query: 694  KLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
            K+YR+ TP  P      Y+   +DNFP GTNA+VA+++YTGYDMEDA+I+NKSS ERG  
Sbjct: 1036 KIYRMITPQFPLVVTRDYELYGVDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIF 1095

Query: 754  HGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
               I+K+  I+LE     +G      G +     + +              S+     ++
Sbjct: 1096 RTHIYKTEIIDLEKN---HGRGEFTLGNNVRYTNSSVGSNANGANGNNSGKSNLKFQYEH 1152

Query: 814  FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
             G+          L  DGL  V  K+ E +P+YSY  ++    V  ++ G  E  V+ V 
Sbjct: 1153 MGK---------MLNKDGLPRVQQKIVELNPLYSYINKANELTVYEKFKGHGEYYVDCV- 1202

Query: 874  MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
                 T   S     A +  R  R P VGDKFASR GQKG+ S  +P ED+PF++SG+VP
Sbjct: 1203 -----TNYKSTRNQIAIVRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSESGIVP 1257

Query: 934  DIVFNPHGFPSRMTIGFL 951
            D++FNPHG PSRMTIG L
Sbjct: 1258 DVIFNPHGIPSRMTIGML 1275



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 127/229 (55%), Gaps = 14/229 (6%)

Query: 413 FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLR 472
           F  TGN+++     +   Q SG+VI A+ IN +R++++FRA+HRG +FQ+++   PR+L 
Sbjct: 584 FFKTGNIAS---ENIGYQQKSGWVIGADEINSLRFITNFRAIHRGCFFQDVKVLSPRKLL 640

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTT-----NCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
            ++WGFICPVHTPDG+PCGLLNHL+      N   +E     +   +  + V++ +   +
Sbjct: 641 GESWGFICPVHTPDGSPCGLLNHLSQFSYVHNSASNESHKLNIKLYLKKIGVNVNLDDTS 700

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEI-VYLKRPE 585
            +     +Q + +++D   + YI +Q  + +V KL+  K      +    EI  YL  P 
Sbjct: 701 GIPTIYEDQTIPIVVDSVPITYISEQDFSRVVYKLKYAKNHNLYSLKAYFEINAYLNEPL 760

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKE 634
               L   + + T PGR++RP+ NL    IE+I    Q ++ I I  ++
Sbjct: 761 ----LMNSIIINTFPGRLIRPLFNLKMKCIEYISPSYQPYVAIAINYED 805



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L  GY+YYGTE +YSG+ G  +QA IFFGV++YQRLRHM  DK Q +
Sbjct: 1381 LNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVR 1427



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 115/293 (39%), Gaps = 47/293 (16%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
           YP   + +   Y G   + +    + +   T T   G +P+M+ S  C+L +L    L +
Sbjct: 170 YPYLCKLSARTYEGEITLKINKKTNDEIIST-TVSAGYIPVMVLSNLCNLSSLNKKMLPQ 228

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
           +GE     GG+F+V GH K++R +I+ + N  I +      +   L +D  VY+  +   
Sbjct: 229 KGEDESLLGGFFVVSGHLKVIRYVIHPKYN-TILLNEENKVHMNCLLNDNSVYVNFLSCP 287

Query: 250 ESATNNVLHFVTNGSARFMFS----------------HRKSMCLLGMMQSLHEEGIHT-- 291
           +        F T G AR+  S                 +KS     M   +  E      
Sbjct: 288 K------FDFFTYG-ARYQNSVMAVPLHVILLLLSPIKKKSYLFNKMKMGIKNENAVKYI 340

Query: 292 -QHDSKVFFGQIFKEK---LQYDLRHLNEVE-----ICDY-----------MLTNCILPH 331
            Q+   +F      EK    +Y+L++L         I  Y           +L   ILPH
Sbjct: 341 EQYIQSIFIKNGLNEKEVFEKYNLKYLGSSSYFRKGIFRYSIVSDEKKGRSILKYVILPH 400

Query: 332 LDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE 384
           +  Y +KF  +  M   L +    ++   ++DS+    + T   L   LLK++
Sbjct: 401 IQSYSEKFETVCMMFKTLIYSKFKLIARINKDSLENHAVTTCSHLLSNLLKEQ 453


>gi|195333588|ref|XP_002033472.1| GM21328 [Drosophila sechellia]
 gi|195582601|ref|XP_002081115.1| GD10835 [Drosophila simulans]
 gi|194125442|gb|EDW47485.1| GM21328 [Drosophila sechellia]
 gi|194193124|gb|EDX06700.1| GD10835 [Drosophila simulans]
          Length = 1137

 Score =  229 bits (583), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 233/913 (25%), Positives = 381/913 (41%), Gaps = 166/913 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM---MQSLHEEGIHTQHDS 295
            G Y     +  S T+++   V    A  + S ++   L+G+    Q+     +   ++ 
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIQSLIGLDSKSQNRFGASLIDAYNL 282

Query: 296 KVFFGQ---------IFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY--WDKFLCL 342
           KVF  Q         +  ++ Q         E  + +LT  IL H+  D++    K + +
Sbjct: 283 KVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTT-ILAHVPVDNFNLQMKAIYV 341

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           S M  ++          D  D    + +   GSL    +  L K+         +K+   
Sbjct: 342 SMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK 401

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S
Sbjct: 402 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 454

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 455 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVE 514

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSL 558
            +     P ++V+         ++ I E            +V ++G ++G  L+     L
Sbjct: 515 ER-----PVMIVAF-----NAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHL 562

Query: 559 VPKLRMLKIVGEKIPK-SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----- 609
           V  LR ++  G      S+   Y +R          +Y+ T  GR+ RP   V N     
Sbjct: 563 VRNLRYMRRKGRMGSYVSVHTSYTQR---------CIYIHTDGGRLCRPYVIVENRRPLV 613

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDF 650
                             L  G IE++   E+   D  I   E      TTH E+     
Sbjct: 614 KQHHLDELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEDQIEDRTTHLEIEPFTL 671

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +   
Sbjct: 672 LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKT 731

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++    
Sbjct: 732 IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR--- 788

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T                    + R+   + D    K  F          D L  D
Sbjct: 789 -YANQT--------------------FDRIMGPMKDALTNKVIFK--------HDVLDTD 819

Query: 831 GLVYVGAKLNER--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           G+V  G ++  +              +P+     +     V   Y G E   +E V +S+
Sbjct: 820 GIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSA 879

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              E   +      I  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++
Sbjct: 880 NAEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMI 934

Query: 937 FNPHGFPSRMTIG 949
            NPHGFPSRMT+G
Sbjct: 935 MNPHGFPSRMTVG 947



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF-----KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F     + +  ELE  G+NY G +  YSG+ GS ++A I+ G V+YQ+L+H
Sbjct: 961  EGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGSPLEAYIYSGPVYYQKLKH 1020

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1021 MVQDKMHAR 1029


>gi|453088008|gb|EMF16049.1| DNA-directed RNA polymerase III subunit RPC2 [Mycosphaerella
            populorum SO2202]
          Length = 1204

 Score =  229 bits (583), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 243/973 (24%), Positives = 402/973 (41%), Gaps = 171/973 (17%)

Query: 72   HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEP-KVPAGPVGIHFNKYY 130
            H  SFD+ +D  +   V+  + I  ++  +   +      I +P ++     G    +  
Sbjct: 113  HTDSFDYFIDVEMKKIVQANSMIHSQVKAEKW-IRFTDIRIGKPSRIEDARAGYVQTEVT 171

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPAQLI 188
            P E R     YS P  + V + +  ++G     +V  GRVP+ML+S +C L   + +++ 
Sbjct: 172  PNECRLRDMTYSAP--IYVDFVYPRQSGNVRKTDVLIGRVPMMLRSSKCVLHGRSESEMS 229

Query: 189  ERGEHPDEWGGYFIVGGHEKLV---------RLLINNRR--------NHPIAIKRNAWK- 230
               E   + GGYFIV G EK++         R+++ + +        +H   IK   +  
Sbjct: 230  FLNECAVDPGGYFIVRGQEKVILVQEQLSKNRVIVESFKGVIQASVTSHTANIKTKTYVL 289

Query: 231  -NRGLLF-------SDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQ 282
              +G L+        D+ V I        + + +L       A++      ++ L  +  
Sbjct: 290  VKKGHLYLKHNSLVEDVPVAIIMRAMGVQSDHEILLLAAGNDAQYQDEFAPNLELAAL-- 347

Query: 283  SLHEEGIHTQHDSKVFFGQIFK------EKLQYDLRHLNEVEICDYMLTNCILPHLD--- 333
                EG+ TQ  +  F     K      +  ++       +E     L   I+PH++   
Sbjct: 348  ----EGVFTQEQALDFIAARLKPDRFINKHKEFKTPKQQALE----KLAGTIIPHVEVEG 399

Query: 334  -DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLKKE 384
             ++  K L ++HMT ++   +     +D  D +  + +   G         L+   +++ 
Sbjct: 400  LNFRPKALYIAHMTRRVLMAINDPKLVDDRDYVGNKRLELAGQMLSLLFEDLFKDSIRQI 459

Query: 385  KSGTSAVLKESDIYAAFR--------ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
            +     +L++ +  + F          S I S M   ++TGN +  +      M  +G  
Sbjct: 460  QMTMDKMLQKHNPTSEFDPVRIVEQIESRITSGMERAISTGNWTLKRFR----MDRAG-- 513

Query: 437  IMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
             +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ 
Sbjct: 514  -VTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVK 572

Query: 495  HLTTNCQIS-----------------EYIPSKVLAQIPSVLVSLGMLPLTPV-IQSIPEQ 536
            +L     I+                 E + S    +I      +  +  TP  +   P+Q
Sbjct: 573  NLALMTHITTADDEGPVRKMMYVLGAEDVTSASGTEIYGAGAYIIFINGTPAALTRQPKQ 632

Query: 537  ALMVMLDGRIVGYILD-------------QIATSLVPKLRMLKIVGEKIPKSLEIVYLKR 583
             L+     R +G I +              IAT      R + IV EK    +   +L+ 
Sbjct: 633  FLLGFRKFRRMGRISEFVSIFINHHHNGVHIATDEGRVCRPM-IVVEKAKSKVTARFLES 691

Query: 584  PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
              KG   +                  L+ G +E++   E+   +I +  K+      TH 
Sbjct: 692  LRKGTMTFDDA---------------LSRGIVEYLDVNEENDSNIAVYEKDINDS-HTHL 735

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 736  EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYPQK 795

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P       + +  D  P G NA+VAV+SY+GYD+EDA++LNK+S +RGF    +FK + +
Sbjct: 796  PMVTTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKVSM 855

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
             L+S  N Y                                     T     RDP N A 
Sbjct: 856  PLKSYQNGY-------------------------------------TDRLADRDP-NNAR 877

Query: 824  EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG--FTEG 881
              K+G DGLV VG++L+  D  Y   +   N+  T   S +      +   +    + + 
Sbjct: 878  HRKIGKDGLVEVGSELDNGD-TYMLKEAPINQVQTIPNSQQRWSPAHMSYKTPDPCYADK 936

Query: 882  GSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              +T N        I  R  R P +GDKF+SR GQKG+  +     D+PF+D G+VPDI+
Sbjct: 937  VVITANDRNDTILKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQADMPFSDQGVVPDII 996

Query: 937  FNPHGFPSRMTIG 949
             NPHGFPSRMT+G
Sbjct: 997  MNPHGFPSRMTVG 1009



 Score = 47.8 bits (112), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 38/72 (52%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     + ++ G++Y G + + SG+ G  +   +FFG ++YQ+
Sbjct: 1020 GVLAGKQEYGTAFGGSKVEDMGAVLIKHGFSYSGKDCLTSGITGESLPFYVFFGPIYYQK 1079

Query: 800  LRHMVSDKWQTK 811
            L+HMV DK   +
Sbjct: 1080 LKHMVQDKMHAR 1091


>gi|242808107|ref|XP_002485094.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218715719|gb|EED15141.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1212

 Score =  229 bits (583), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 242/906 (26%), Positives = 398/906 (43%), Gaps = 141/906 (15%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK-EVGRVPIMLKSKRCHLRNLTPAQLIE 189
            P E R     Y+ P  V   +   GK   T  +  +GR+PIML+S +C L N  P +L  
Sbjct: 168  PNECRLRDMTYAAPIFVDFTYKR-GKDNVTQRRVPIGRMPIMLRSSKCVLSNKKPNELHL 226

Query: 190  RGEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPI-----AIKRNAWKNRG-L 234
              E P + GGYFIV G EK++         R+++       I         N  K++  +
Sbjct: 227  LNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYI 286

Query: 235  LFSDLGVYIRSVKRDESATNNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE--- 287
            +     +Y+R         +NVL      V    A  + S ++ M L+  +  +++E   
Sbjct: 287  ILKKDRLYLR---------HNVLSEDVPLVIVLKAMGVHSDKEMMLLVAGIDDVYQEDFA 337

Query: 288  ---------GIHTQHDSKVFFG---QIFKEKLQ-YDLRHLNEVEICDYMLTNCILPHLD- 333
                      + TQ  +  + G   +I + K+  Y   H+ E       +++ ++ H++ 
Sbjct: 338  INFEEAIKQNVFTQQQALDWIGSKIKINRGKVGGYKKTHIEE---AIEAISSVVISHVEV 394

Query: 334  ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK--- 383
               D+  K + +++M  ++         +D  D +  + +   G L    +  L KK   
Sbjct: 395  TNMDFRPKAIYVANMARRVLMAKHDPSMVDDRDYVGNKRLELAGQLLALLFEDLFKKFCF 454

Query: 384  -EKSGTSAVL--KESDIY-----AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGF 435
              K   + VL  +  +I+      A   + I   M   ++TGN S  +      M+ +G 
Sbjct: 455  DIKMNITKVLGKRRREIFDAMSVVALHGNHITHGMNRAISTGNWSLKRFR----MERAG- 509

Query: 436  VIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL- 492
              +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CGL 
Sbjct: 510  --VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLV 567

Query: 493  -----LNHLTTNCQ---ISEYI-----------PSKVLAQIPSVLVSLGMLPLTPVIQSI 533
                 + H+TTN +   +S+ +             K +  + + ++S+   P+   +   
Sbjct: 568  KNLALMTHITTNDEEGPVSKLVFMLGAEDITTLSGKEIYGLGAYIISMNGTPIA--MTRR 625

Query: 534  PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE--KIPKSLEIVYLKRPEKGMGLY 591
            P+  L      R +G + + ++  +    R + I  +  +I + L +V     E G  L 
Sbjct: 626  PKHFLNSFRRLRRMGRVSEFVSIYINHHQRAVHIATDDGRICRPLIVV-----ENGKPLV 680

Query: 592  PGLYLFTGPGRMLRPVMN----LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
               +L    G++    M     LA G +E++   E+   +I I  K+    ITTH E+  
Sbjct: 681  NSRHL----GKLRDGSMQFDDFLAQGLVEYLDVNEENDSNIAIYEKDVV-DITTHLEIEP 735

Query: 648  TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
               L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 736  FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVK 795

Query: 708  PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
                + +  D+ P G NA VAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S
Sbjct: 796  TRTIELIKYDHLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANLKS 855

Query: 768  GYNYYGTETMYSGVDGSMMQAQIF-FGVVHYQRLRHMVSDKWQTKDYFGRD-PANKALED 825
              N  G+E    G +       I    ++    L  +     Q + Y  ++ PA      
Sbjct: 856  YPN--GSEDRLRGPEIGENNVPIAKHALLDSDGLAAVGEVVSQGQVYINKEVPAAAFSAG 913

Query: 826  KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT 885
              G D       +  + +P    +K  +  Y+       +++ V V       TEG S  
Sbjct: 914  ITGSD-----AGRPTDYNPAPMTYKLPDPSYI-------DKVMVSV-------TEGES-- 952

Query: 886  PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSR 945
                 +  R  R P VGDKF+SR GQKG+  +     D+PFTD G+VPDI+ NPHGFPSR
Sbjct: 953  -KIYKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSR 1011

Query: 946  MTIGFL 951
            MT+G L
Sbjct: 1012 MTVGKL 1017



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 17/147 (11%)

Query: 748  YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            Y   F    + +   I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK
Sbjct: 1034 YGTAFGGSPVEEMSAILVDKGFSYGGKDYLTSGITGDPLPFYVFTGPIYYQKLKHMVQDK 1093

Query: 808  WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEM 867
              ++    R    +   +    DG + +G    ERD + +Y              G  ++
Sbjct: 1094 MHSRSTGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQL 1137

Query: 868  CVEVVRMSSGFTEGGSVTPNCAYIGYR 894
             +E + +SS   E   +   C ++GY+
Sbjct: 1138 LLERLMLSSDKHE-VDICEKCGFMGYQ 1163


>gi|390596427|gb|EIN05829.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1143

 Score =  229 bits (583), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 228/896 (25%), Positives = 369/896 (41%), Gaps = 126/896 (14%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  VT+ ++            +GR+PIML+S +C L     AQL   
Sbjct: 107 PHECRLRDTTYSAPILVTIQYTRGKSVVRRPNVSIGRIPIMLRSNKCVLTGRNEAQLARM 166

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYF+V G EK++         R+++       +          G L S    
Sbjct: 167 LECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVETDPVKDVVQASCTSSTHGGLKSK--T 224

Query: 242 YIRSVKRDESATNNVLHF---VTNGSARFMFSHRKSMCLLGM-------------MQSLH 285
           Y+ + K      +N +H    +        F   K + LL               ++   
Sbjct: 225 YVATKKGKIYLRHNSIHEDVPIVIALKALGFQADKEILLLTAGNSEVYKSAFSPNLEEAA 284

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
           + G+ T+H +  + G   K   +         E     L   +L H+     D+  K + 
Sbjct: 285 KLGVFTRHQALEYIGSRVKVNRRVIGPRRPAWEEAMEALATIVLAHVPVNGLDFRPKAIF 344

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVL 392
           ++ MT ++   +     +D  D +  + +   G L L LL ++         KS    VL
Sbjct: 345 VATMTRRVLMAMADEKMVDDRDYVGNKRLELAGQL-LALLFEDLFKTFNSNLKSAIDKVL 403

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMAENINRMRYM 448
           K+      F A +    M + + +G V A       L    M+ +G   +   ++R+ ++
Sbjct: 404 KKPSRTNEFDAWNTMQFMGDHITSGFVRAISTGNWSLKRFKMERAG---VTHVLSRLSFI 460

Query: 449 SHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
           S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +
Sbjct: 461 SALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDV 520

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
             + + +I + L+ +  + L    +       +V ++G I+G  L +     V   R L+
Sbjct: 521 EEEPIIRI-AYLLGVEDICLASGAEVYGPHTFVVHVNGTIIG--LTRYPARFVSNFRKLR 577

Query: 567 IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----------------- 609
             G         +Y+         +  +++ T  GR+ RP++                  
Sbjct: 578 RAGRF--SEFVSIYVNHH------HSTVHIATDGGRICRPMIIVENQRPRVTSDHILLLK 629

Query: 610 ---------LAAGNIEWIGTFEQVFMDICITMKEA-YPGITTHRELSKTDFLSNLANLIP 659
                    L  G +E++   E+   D  I + EA     TTH E+     L  +A LIP
Sbjct: 630 KGQVNFDDFLKKGLVEYLDVNEE--NDSYIALYEANIVSSTTHLEIEPFTILGAVAGLIP 687

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
            P  NQSPRN YQC MGKQ +G    N   +    LY    P  P  +    + +  D  
Sbjct: 688 YPHHNQSPRNTYQCAMGKQAIGAIGFNQLNRIETLLYLHCYPQQPMVKTKTIELIGYDKL 747

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    + +      ++    Y   T   
Sbjct: 748 PAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKN----QTLIRKYPNGTFDR 803

Query: 780 GVDGSMMQ---AQIFFGVVHYQRLRHMVSDKWQTKDYF--GRDPANKALEDKLGPDGLV- 833
             D  + +    Q  + ++    L   V ++    D +   + P N      +G    V 
Sbjct: 804 LADAPVDENGGVQKKYDIIQMDGLAG-VGERVDPGDVYINKQTPTNANDNAFVGQAASVP 862

Query: 834 YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
           Y  A +  + P+  Y  +     V    +  E+  ++V+                     
Sbjct: 863 YKNAPMTYKSPVSGYIDK-----VMITDTENEQTLIKVL--------------------M 897

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           R  R P +GDKF+SR GQKG+C +    ED+PF D G+VPD + NPHGFPSRMT+G
Sbjct: 898 RQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDSIMNPHGFPSRMTVG 953



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 17/149 (11%)

Query: 745  KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            K  Y   F    +     I +E+G+NY G + + SG+ G  M+A ++FG ++YQ+L+HMV
Sbjct: 969  KLQYGTAFGGSKVEDMSRILIENGFNYAGKDMLTSGITGEQMEAYVYFGPIYYQKLKHMV 1028

Query: 805  SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGK 864
             DK   +    R    +   +    +G + +G    ERD +  Y              G 
Sbjct: 1029 MDKMHARARGPRATLTRQPTEGRSREGGLRLGEM--ERDCLIGY--------------GA 1072

Query: 865  EEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
             ++ +E + +SS   E  +    C  +GY
Sbjct: 1073 TQLLLERLMISSDKFEVNACA-ECGLMGY 1100


>gi|17647877|ref|NP_523706.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|78099797|sp|P25167.2|RPC2_DROME RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
           Short=RNA polymerase III subunit C2; AltName:
           Full=DNA-directed RNA polymerase III 128 kDa
           polypeptide; Short=C128
 gi|7303535|gb|AAF58590.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|220943532|gb|ACL84309.1| RpIII128-PA [synthetic construct]
          Length = 1137

 Score =  229 bits (583), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 234/913 (25%), Positives = 383/913 (41%), Gaps = 166/913 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLL---INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++         ++L    N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM---MQSLHEEGIHTQHDS 295
            G Y     +  S T+++   V    A  + S ++   L+G+    Q+     +   ++ 
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNL 282

Query: 296 KVFFGQ---------IFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY--WDKFLCL 342
           KVF  Q         +  ++ Q         E  + +LT  IL H+  D++    K + +
Sbjct: 283 KVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTT-ILAHVPVDNFNLQMKAIYV 341

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           S M  ++          D  D    + +   GSL    +  L K+         +K+   
Sbjct: 342 SMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK 401

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S
Sbjct: 402 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 454

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 455 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVE 514

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSL 558
            +     P ++V+         ++ I E            +V ++G ++G  L+     L
Sbjct: 515 ER-----PVMIVAF-----NAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHL 562

Query: 559 VPKLRMLKIVGEKIPK-SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----- 609
           V  LR ++  G      S+   Y +R          +Y+ T  GR+ RP   V N     
Sbjct: 563 VRNLRYMRRKGRMGSYVSVHTSYTQR---------CIYIHTDGGRLCRPYVIVENRRPLV 613

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDF 650
                             L  G IE++   E+   D  I   E      TTH E+     
Sbjct: 614 KQHHLDELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEDQIEDRTTHLEIEPFTL 671

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +   
Sbjct: 672 LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKT 731

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++    
Sbjct: 732 IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR--- 788

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T                    + R+   + D    K  F          D L  D
Sbjct: 789 -YANQT--------------------FDRIMGPMKDALTNKVIFK--------HDVLDTD 819

Query: 831 GLVYVGAKLNER--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           G+V  G ++  +              +P+     +     V   Y G E   +E V +S+
Sbjct: 820 GIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSA 879

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              E   +      I  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++
Sbjct: 880 NAEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMI 934

Query: 937 FNPHGFPSRMTIG 949
            NPHGFPSRMT+G
Sbjct: 935 MNPHGFPSRMTVG 947



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF-----KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F     + +  ELE  G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 961  EGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKH 1020

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1021 MVQDKMHAR 1029


>gi|19074837|ref|NP_586343.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
           [Encephalitozoon cuniculi GB-M1]
 gi|19069562|emb|CAD25947.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
           [Encephalitozoon cuniculi GB-M1]
          Length = 1110

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 252/988 (25%), Positives = 410/988 (41%), Gaps = 197/988 (19%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+D+ +D  +   V     ++ +I   T  L  +   ++ P V    V  +    +P
Sbjct: 23  HIESYDYFVDHEIKALVRANQIVDSDI-DHTFYLKYLDIRVAMPSVEENMVNYNV---FP 78

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA------ 185
            E R     YS    V + +  + +        +G++P+ML+S RCHLR  T        
Sbjct: 79  IECRLRDITYSANIYVDIEYVRNRQIIVKRDVCIGKMPVMLRSSRCHLRRETKGPMEGRK 138

Query: 186 ----QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
               ++ E  E P + GGYFIV G E++V L+      + I I+      +GL  S    
Sbjct: 139 TKDRRIRESQECPLDVGGYFIVRGIERVV-LIQEQLSKNRIIIESGP---KGLFASVTSS 194

Query: 242 YIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL----LGMMQSLH------------ 285
                 +    T +  +++ N     MFS    + +    LG++Q               
Sbjct: 195 TDEHKSKTSVTTRDDCYYLKNS----MFSEEVPVVIMMKALGLVQDREVAECVGKEYFEI 250

Query: 286 ---------EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD--- 333
                     +GI T+  + ++     K K +      N +E    +L+  +LP++    
Sbjct: 251 MVPSFGECMSKGIFTREQALLYISSYIKLKPED-----NRIEEVLTVLSEKVLPNVQIEG 305

Query: 334 -DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--------- 383
            D   K + ++ M  +L      +++ D +D +  +     G L   L +          
Sbjct: 306 CDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFEL 365

Query: 384 EKSGTSAVLKESD-------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
           +KS    + K S         +   +A+ I S +   ++TGN +  +      M+ SG  
Sbjct: 366 KKSIDKILSKRSRAQEFDALTFLNLQANMITSTLARAISTGNWNLKRFR----MERSG-- 419

Query: 437 IMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
            +   ++R  Y+S    + +  S+F++ R  S PR L T +WG +CPV TP+G  CGL+ 
Sbjct: 420 -VTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVK 478

Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM--VMLDGRIVG---- 548
           +L    +I+    +K    I   +  LG++ +  V      Q  M  V L+G I+G    
Sbjct: 479 NLALLAEITTNSDTK---PILDTVYKLGVVDINSVYTREIHQKDMFSVFLNGDIIGITNR 535

Query: 549 --YILDQIA----TSLVPKL---------RMLKIVGE--KIPKSLEIVYLKRPEKGM--- 588
             ++++Q        LV K          R++ I  +  ++ + L I+   R  + +   
Sbjct: 536 ADFLVEQFKLHRRKGLVGKFVSIYKVTVERVIHIASDNGRVCRPLIIIDKNRINQTIISN 595

Query: 589 ---------------GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMK 633
                           +  G  LF    +       L  G IE++   E+   D  + +K
Sbjct: 596 QMDECLKALNISEKVAIESGKSLFDCYLKYKSFTDLLEEGFIEYLDVNEE--NDCLVALK 653

Query: 634 -EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
            E     TTH E+S+   L  +A L+P P  NQSPRN YQC MGKQ +G   LN + +  
Sbjct: 654 PEDIGEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFD 713

Query: 693 GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
             + +L     P       D ++ +  P G NA+VAV+SY+GYD+EDA++LNK+S ERG 
Sbjct: 714 SVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGL 773

Query: 753 AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
               ++K+             T T+       M                          D
Sbjct: 774 FRVEVYKT-------------TTTLLKKHSNGM-------------------------SD 795

Query: 813 YFGRDPANKAL-EDKLGP------DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
               +P    L ED LG       DG VYV    N+  P+   +K          ++GK 
Sbjct: 796 VLWPNPKESVLDEDGLGKPGKMVRDGTVYV----NKMSPVDGTYK----------FTGK- 840

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYI----GYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
                V R    + +   +T +   +      R  R P +GDKF+SR GQKG+  +    
Sbjct: 841 -----VHRGDPAYIDKILITKSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQ 895

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           ED+PF D G+VPDI+ NPHGFPSRMT+G
Sbjct: 896 EDMPFNDQGIVPDIIMNPHGFPSRMTVG 923



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 719  FP--MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            FP  M    IV +IS     +E   IL+ ++    F    + ++  + ++ G++Y G + 
Sbjct: 916  FPSRMTVGKIVELISGKAGVLE-GQILDSTA----FKENSVEQTCELLIKHGFSYSGKDC 970

Query: 777  MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
              SG  G+ + A IFFG V YQRL+HMV+DK   +    R    +   +    DG + +G
Sbjct: 971  FTSGTTGAPLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLG 1030

Query: 837  AKLNERDPMYSYWKES 852
                ERD +  Y   S
Sbjct: 1031 EM--ERDCLIGYGASS 1044


>gi|195485554|ref|XP_002091138.1| GE12399 [Drosophila yakuba]
 gi|194177239|gb|EDW90850.1| GE12399 [Drosophila yakuba]
          Length = 1137

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 234/913 (25%), Positives = 381/913 (41%), Gaps = 166/913 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM---MQSLHEEGIHTQHDS 295
            G Y     +  S T+++   V    A  + S ++   L+G+    Q+     +   ++ 
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLLDAYNL 282

Query: 296 KVFFGQ---------IFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY--WDKFLCL 342
           KVF  Q         +  ++ Q         E  + +LT  IL H+  D++    K + +
Sbjct: 283 KVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTT-ILAHVPVDNFNLQMKAIYV 341

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           S M  ++          D  D    + +   GSL    +  L K+         +K+   
Sbjct: 342 SLMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK 401

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S
Sbjct: 402 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 454

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 455 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVE 514

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSL 558
            +     P ++V+         ++ I E            +V ++G ++G  L+     L
Sbjct: 515 ER-----PVMIVAF-----NAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHL 562

Query: 559 VPKLRMLKIVGEKIPK-SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----- 609
           V  LR ++  G      S+   Y +R          +Y+ T  GR+ RP   V N     
Sbjct: 563 VRNLRYMRRKGRMGSYVSVHTSYTQR---------CIYIHTDGGRLCRPYVIVENRRPLV 613

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDF 650
                             L  G IE++   E+   D  I   E      TTH E+     
Sbjct: 614 KQHHLNELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEDQIEDRTTHLEIEPFTL 671

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +   
Sbjct: 672 LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKT 731

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++    
Sbjct: 732 IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR--- 788

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T                    + R+   + D    K  F          D L  D
Sbjct: 789 -YANQT--------------------FDRIMGPMKDALTNKVIFK--------HDVLDTD 819

Query: 831 GLVYVGAKLNER--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           G+V  G ++  +              +P+     +     V   Y G E   VE V +S+
Sbjct: 820 GIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYVERVMVSA 879

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              E   +      I  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++
Sbjct: 880 NSEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMI 934

Query: 937 FNPHGFPSRMTIG 949
            NPHGFPSRMT+G
Sbjct: 935 MNPHGFPSRMTVG 947



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF-----KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F     + +  ELE  G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 961  EGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKH 1020

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1021 MVQDKMHAR 1029


>gi|195024375|ref|XP_001985862.1| GH20856 [Drosophila grimshawi]
 gi|193901862|gb|EDW00729.1| GH20856 [Drosophila grimshawi]
          Length = 1137

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 225/902 (24%), Positives = 375/902 (41%), Gaps = 144/902 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P +V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPISVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM-MQSLHEEG--------- 288
            G Y     +  S T+++   V    A  + S ++ M  +G+  +S +  G         
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIMTHIGLDARSQNRFGASLLEAFNL 282

Query: 289 -IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLS 343
            + TQ  +  + G     K      +    E    +L   IL H+     ++  K + +S
Sbjct: 283 KVFTQQRALDYMGSKLVVKRFQSATNKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVS 342

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTSA 390
            M  ++          D  D    + +   GSL    +  L K+         +K+    
Sbjct: 343 LMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLMSLMFEDLFKRMNWELKMIADKNIPKV 402

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSH 450
              + D+    RA+ I   + + +++GN +  +      M+ +G   + + ++R+ Y+S 
Sbjct: 403 KAAQFDVVKHMRAAQITVGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYISA 455

Query: 451 FRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
              + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +  
Sbjct: 456 LGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDE 515

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
           + +  +        +  ++    + P    +V ++G ++G  ++Q    LV  LR ++  
Sbjct: 516 RPVMTLAYNAGVEDIREVSGNPMNNP-HVFLVFINGNVLGLTINQ--KHLVRNLRYMRRK 572

Query: 569 GEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------------ 609
           G      S+   Y +R          +++ T  GR+ RP +                   
Sbjct: 573 GRMGSFVSIHTSYTQR---------CIFIHTDGGRLCRPYIIVDNMRPLVEQRHLDELLR 623

Query: 610 --------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                   L  G IE++   E+    I    +   P +TTH E+     L   A L+P P
Sbjct: 624 GIRKFDDFLHDGLIEYLDVNEENDSFIAWNEEHIEP-LTTHLEIEPFTLLGVCAGLVPYP 682

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
             NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +    +  + D  P 
Sbjct: 683 HHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFDKLPA 742

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++     Y  +T     
Sbjct: 743 GQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR----YANQT----- 793

Query: 782 DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
                          + R+   V D    K  F          D L  DG+V  G  +  
Sbjct: 794 ---------------FDRIMGPVKDALTNKVIFK--------HDVLDTDGIVAPGEMVQN 830

Query: 842 R--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
           +              +P+     +     V   Y G E   +E V +S+   E   +   
Sbjct: 831 KQIMINKEMPAVTSINPLEGQSPQVPYTAVPISYKGPEPSYIERVMVSANSEEDFLIK-- 888

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
              I  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++ NPHGFPSRMT
Sbjct: 889 ---ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDYGICPDMIMNPHGFPSRMT 945

Query: 948 IG 949
           +G
Sbjct: 946 VG 947



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF---KSMFIELE---SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F   K+  ++ E    G+NY G +  YSG+ G  ++A I+ G V+YQ+L+H
Sbjct: 961  EGKFHYGTAFGGSKAADVQAELVRHGFNYMGKDFFYSGITGGPLEAYIYSGPVYYQKLKH 1020

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1021 MVQDKMHAR 1029


>gi|121703239|ref|XP_001269884.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
 gi|119398027|gb|EAW08458.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
          Length = 1246

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 262/1020 (25%), Positives = 422/1020 (41%), Gaps = 200/1020 (19%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI S+++ ++  L   VE  + I  +I   
Sbjct: 113  KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYFIEVQLKKIVESSSTIRSDI-DH 170

Query: 102  TLKLNIVKAAISEPKVPAGPVGIHFNKY----YPTEARQTRSVYSGPFNVTVAWSWDGKA 157
               +      +  P     P     + +     P E R   + Y+ P  V   +    + 
Sbjct: 171  NFYIKFTDIYVGSPCRADEPQDASLDAFPSSVSPHECRLRDTTYAAPILVDFEYIRGRQR 230

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV------- 210
                   +GR+PIML+S +C L N TP+++    E P + GGYFIV G EK++       
Sbjct: 231  VIRRGVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQLS 290

Query: 211  --RLLINNRRNHPI-----AIKRNAWKNRG-LLFSDLGVYIRSVKRDESATNNVLHFVTN 262
              R+++       I         N  K++  ++     +Y++      +  N  +  V  
Sbjct: 291  KNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDKLYVK-----HNVLNEDIPIVIL 345

Query: 263  GSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFG---QIFKEKL 307
              A  + + ++ + L+  + SL+++            GI+TQ  +  + G   +I ++++
Sbjct: 346  LRAMGIHTEQEMLLLVAGVDSLYQDDFAINFEDSIKLGIYTQQQALDWIGARIKINRKQM 405

Query: 308  QYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSE 362
             Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++         +D  
Sbjct: 406  SYRRTHIQEAVE----AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDPSLVDDR 461

Query: 363  DSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSIESAMTNFL 414
            D +  + +   G L    +  L KK     K     VL + +   AF A S+ S   N +
Sbjct: 462  DYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEAFDAWSVMSMHGNHI 521

Query: 415  ATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEP 468
              G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F++ R  S P
Sbjct: 522  TQGMNRAISTGNWSLKRFRMERAG---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGP 578

Query: 469  RQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI---PSVLV 519
            R L+   +G +CP  TP+G  CGL      + H+TTN    E  P K L  +     +L 
Sbjct: 579  RALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTN---DEEGPIKNLVFMLGAEDILA 635

Query: 520  SLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIV 579
              G    TP   +I      + L  R   ++      +   +LR +  + E +      +
Sbjct: 636  LGGKQLYTPGSYTISINGTPIALTRRPKFFL------NAFRRLRRMGRISEFVS-----I 684

Query: 580  YLKRPEKGMGLYPGLYLFTGPGRMLRPVMN--------------------------LAAG 613
            Y+   +        +++ T  GR+ RP++                           LA G
Sbjct: 685  YINHHQ------CAVHIATDDGRICRPLIVVENGKSLVTGEHLEKLRDGTMQFDDFLAQG 738

Query: 614  NIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
             +E++   E+    I I  ++     TTH E+     L  +A LIP P  NQSPRN YQC
Sbjct: 739  LVEYLDVNEENDSLIAI-YEDRITDTTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC 797

Query: 674  QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
             MGKQ +G    N   +    LY +  P  P  +    +    D  P G NA+VAV+SY+
Sbjct: 798  AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAMVAVMSYS 857

Query: 734  GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG 793
            GYD+EDA++LNK S +RGF    +F+     L+S  N  GT+                  
Sbjct: 858  GYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSN--GTK------------------ 897

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKES 852
                        D+     Y    P  K AL   L  DGL  VG ++N  +         
Sbjct: 898  ------------DRLNPPTYENGAPIRKHAL---LESDGLAAVGEQVNAGE--------- 933

Query: 853  ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP------NCAYIG---YRIQRN----- 898
                V    S  ++  +  +   +G     + TP      + AYI    Y +Q N     
Sbjct: 934  ----VYINKSTPDQSHMSGIGSDAGRPIQYTPTPMTYKLHDPAYIDKVMYSVQENENQLV 989

Query: 899  ---------PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
                     P VGDKF+SR GQKG+  +     D+PFTD G+ PDI+ NPHGFPSRMT+G
Sbjct: 990  KVLVRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDLGINPDIIMNPHGFPSRMTVG 1049



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 17/126 (13%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G+NY G E + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    +   +  
Sbjct: 1088 GFNYGGKEYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGR 1147

Query: 828  GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
              DG + +G    ERD + +Y              G  ++ +E + +SS   E   V   
Sbjct: 1148 SRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-IDVCEQ 1190

Query: 888  CAYIGY 893
            C ++GY
Sbjct: 1191 CGFMGY 1196


>gi|346323848|gb|EGX93446.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Cordyceps
           militaris CM01]
          Length = 1164

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 243/926 (26%), Positives = 380/926 (41%), Gaps = 174/926 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  V + +  D +        +GR+P+ML+S +C L     +++ + 
Sbjct: 113 PMECRLRDMTYAAPILVDIVYIRDKQKIIRRNVSLGRMPVMLRSSKCRLSGANNSEMEKM 172

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E P + GGYFI+ G EK++  LI  + +    I  +  KNR +  S       S    +
Sbjct: 173 NECPLDPGGYFIINGTEKVI--LIQEQLSKNRVIVESDEKNRIISAS----VTSSTHERK 226

Query: 251 SATNNVLHFVTNGSARFMFSHR---------------------KSMCLLGMMQSLHEE-- 287
           S TN     VT    R +  H                      + M L+      +++  
Sbjct: 227 SKTN-----VTLKKDRIVLVHNVLVEGIPIVIVLKALGGLTDYEIMQLVAGADGRYQDEF 281

Query: 288 ----------GIHTQHDSKVFFGQIFK---EKLQY--DLRHLNEVEICDYMLTNCILPHL 332
                     G+ TQH +  + G   K    + Q+   +R  N  E  D  L N I+ H+
Sbjct: 282 LINFDEATKAGVFTQHQALEYIGSRVKMGSRRGQFGPQVRRNNVEEGLD-ALANLIIAHV 340

Query: 333 D----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--KS 386
                D++ K + ++ MT K+    Q    +D  D +  + +   G L L LL ++  K 
Sbjct: 341 PIEGLDFYPKAIYVAMMTRKVLMAAQDSKLVDDRDFVGNKRLELAGQL-LSLLFEDLFKR 399

Query: 387 GTSAVLKESDIYAAFRASSIESAMTNFLA--TGNVSAGKNSTLQL---------MQASGF 435
            T  V    D +      ++     N ++    N+  G N  +Q          M  +G 
Sbjct: 400 FTVEVKMSIDKFLKKNNRAVPLDAVNMISNHANNIGMGINRAIQTGNWSVKRFNMNRAG- 458

Query: 436 VIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLL 493
             +   ++R+ Y++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+
Sbjct: 459 --VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLV 516

Query: 494 NHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYIL 551
            +L     I+  +    + +    L  +G+ P+      +   E + ++ ++G    + L
Sbjct: 517 KNLALMTHITTNVDEDPVKRWVFTL-DVGVEPIRNFSGAEMHREGSYIIHING--TPFAL 573

Query: 552 DQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VM 608
            +       K R ++  G   P     + L         +  +++    GR+ RP   V 
Sbjct: 574 TRYPKRFCSKFRTMRRRGWISPFVSISINLH--------FNAVHIAADEGRICRPYIIVK 625

Query: 609 N-----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI-TTHRE 644
           N                       L  G +E++   E+   D  +T+ E    + TTH E
Sbjct: 626 NGVQKLKPEHLRLLQLGSVTFDDFLRNGVVEYLDVNEE--QDALVTIYEDKITMSTTHLE 683

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P
Sbjct: 684 IEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRP 743

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
                    ++ D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    E
Sbjct: 744 MVISKTIQLVNYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTE 803

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           L+   N                           +R+   V++     D   R   +KAL+
Sbjct: 804 LQKYPNG------------------------RRERIGDPVNEG--DGDQRRRSEKHKALD 837

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS- 883
           D    DGL  VG ++     M    KE+     T          + + R SS F +    
Sbjct: 838 D----DGLAMVGCRVFSGQSMIK--KETPLDMTTT--------GIGLDRGSSDFRDSAVN 883

Query: 884 -VTPNCAYIG-----------------YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              P+ AYI                   R  R P +GDKF+SR GQKG+  +    ED+P
Sbjct: 884 YRIPDPAYIDKVMISHTEKDTTVVKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDHEDMP 943

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F D+GL PDI+ NPHGFPSRMT+G L
Sbjct: 944 FADNGLTPDIIMNPHGFPSRMTVGKL 969



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            +  G  F+S  +E      L+ G+++ G +   SG+ G  ++A IF G ++YQRL+HMV 
Sbjct: 986  YGFGDAFRSHPVEEMSQVLLDHGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQ 1045

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            DK  ++    R    +   +    DG + +G    ERD + +Y
Sbjct: 1046 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY 1086


>gi|400597534|gb|EJP65264.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
          Length = 1157

 Score =  228 bits (582), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 240/921 (26%), Positives = 381/921 (41%), Gaps = 164/921 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  V + +  D +        +GR+P+ML+S +C L     A++ + 
Sbjct: 106 PMECRLRDMSYAAPILVDIVYIRDKQKIIRRNVSLGRMPVMLRSSKCRLSGANNAEMEKM 165

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS-DLGVYIRSVKRD 249
            E P + GGYFI+ G EK++  LI  + +    I     KNR +  S     + R  K +
Sbjct: 166 NECPLDPGGYFIINGTEKVI--LIQEQLSKNRVIVEADEKNRIISASVTSSTHERKSKTN 223

Query: 250 ESATNNVLHFVTNG-----------SARFMFSHRKSMCLLGMMQSLHEE----------- 287
            +   + +  V N             A    S  + M L+      +++           
Sbjct: 224 VTLKKDRIVLVHNVLVEGIPIVIVLKALGGLSDYEIMQLVAGADGRYQDEFLINFDEATK 283

Query: 288 -GIHTQHDSKVFFGQIFK---EKLQY--DLRHLNEVEICDYMLTNCILPHLD----DYWD 337
            G+ TQH +  + G   K    + Q+   +R  N  E  D  L N I+ H+     D++ 
Sbjct: 284 AGVFTQHQALEYIGTRVKMGSRRGQFGPQVRRNNVEEGLD-ALANLIIAHVPIEGLDFYP 342

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQLLKKEKSGTS 389
           K + ++ MT K+    Q    +D  D +  + +   G         L+ + + + K    
Sbjct: 343 KAIYVAMMTRKVLMAAQDSKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMVEVKMSID 402

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMAE 440
             LK+++      A ++ S   N     N+  G N  +Q          M  +G   +  
Sbjct: 403 KFLKKNNRAVPLDAVNMISNHAN-----NIGMGINRAIQTGNWSVKRFNMNRAG---VTH 454

Query: 441 NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
            ++R+ Y++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L  
Sbjct: 455 VLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLAL 514

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIAT 556
              I+  +  + + +    L  +G+ P+      +   E + ++ ++G    + L +   
Sbjct: 515 MTHITTNVDEEPVKRWVFTL-DVGVEPIRNFSGAEMHREGSYIIHING--TPFALTRYPK 571

Query: 557 SLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN---- 609
               + R ++  G   P     + L         +  +++ T  GR+ RP   V N    
Sbjct: 572 RFCSRFRTMRRRGWISPFVSISINLH--------FNAVHIATDEGRICRPYIIVKNGFQK 623

Query: 610 -------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI-TTHRELSKTD 649
                              L  G +E++   E+   D  +T+ E    + TTH E+    
Sbjct: 624 LKPEHLRLLQLGKVTFDDFLRNGVVEYLDVNEE--QDALVTIYEDKITMGTTHLEIEPFT 681

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P     
Sbjct: 682 ILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISK 741

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
               ++ D  P G NA V V+SY+GYD+EDA++LNK S +RGF    +F+    EL+   
Sbjct: 742 TIQLVNYDKLPAGQNATVVVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYTTELQKYP 801

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
           N                           +R+   V++     D   R   +KAL+D    
Sbjct: 802 NG------------------------RRERIGDPVNEG--DGDQRKRTEKHKALDD---- 831

Query: 830 DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS--VTPN 887
           DGL  VG ++     M    KE+     T          + + R SS F +       P+
Sbjct: 832 DGLAMVGGRVFSGQSMIK--KETPLDLTTT--------GIGLDRGSSDFRDSAVNYRIPD 881

Query: 888 CAYIG-----------------YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSG 930
            AYI                   R  R P +GDKF+SR GQKG+  +    ED+PF D+G
Sbjct: 882 PAYIDKVMISHTEKDTTVVKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEHEDMPFADNG 941

Query: 931 LVPDIVFNPHGFPSRMTIGFL 951
           L PDI+ NPHGFPSRMT+G L
Sbjct: 942 LTPDIIMNPHGFPSRMTVGKL 962



 Score = 48.5 bits (114), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            +  G  F+S  +E      L+ G+++ G +   SG+ G  ++A IF G ++YQRL+HMV 
Sbjct: 979  YGFGDAFRSHPLEEMSQVLLDHGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQ 1038

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
            DK  ++    R    +   +    DG + +G    ERD + +Y
Sbjct: 1039 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY 1079


>gi|194753345|ref|XP_001958974.1| GF12287 [Drosophila ananassae]
 gi|190620272|gb|EDV35796.1| GF12287 [Drosophila ananassae]
          Length = 1137

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 232/912 (25%), Positives = 373/912 (40%), Gaps = 164/912 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVISK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQ--------SLHEE--- 287
            G Y     +  S T+++   V    A  + S ++ M  +G+          SL E    
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIMAHIGIDSKSQNRFGASLLEAFNL 282

Query: 288 GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLS 343
            + TQ  +  + G     K           E    +L   IL H+     ++  K + +S
Sbjct: 283 KVFTQQRALDYMGSKLVVKRFQSATTKTPAEEARELLLTTILAHVPVDNFNFQMKAIYVS 342

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTSA 390
            M  ++          D  D    + +   GSL    +  L K+         +K+    
Sbjct: 343 MMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELKTIADKNIPKV 402

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSH 450
              + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S 
Sbjct: 403 KAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYISA 455

Query: 451 FRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
              + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +  
Sbjct: 456 LGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEE 515

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSLV 559
           K       V+V    L     ++ I E            +V ++G ++G  L+     LV
Sbjct: 516 K------PVMV----LAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--RHLV 563

Query: 560 PKLRMLKIVGEKIPK-SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN--------- 609
             LR ++  G      S+   Y +R          +Y+ T  GR+ RP +          
Sbjct: 564 KNLRYMRRKGRMGSYVSVHTSYTQR---------CIYIHTDGGRLCRPYIIVEKCRPLVK 614

Query: 610 -----------------LAAGNIEWIGTFEQVFMDICITMKEAY-PGITTHRELSKTDFL 651
                            L  G IE++   E+   D  I   E +    TTH E+     L
Sbjct: 615 QHHLDELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEEHIEERTTHLEIEPFTLL 672

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +    
Sbjct: 673 GVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSKTI 732

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++     
Sbjct: 733 ELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR---- 788

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
           Y  +T                    + R+   V D    K  F          D L  DG
Sbjct: 789 YANQT--------------------FDRIMGPVKDALTNKVIFK--------HDVLDTDG 820

Query: 832 LVYVGAKLNER--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
           +V  G  +  +              +P+     +     V   Y G E   +E V +S+ 
Sbjct: 821 IVAPGEMVQNKQIMINKEMPAVTSMNPLDGQSPQVPYTAVPISYKGPEPSYIERVMVSAN 880

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             E   +      I  R  R P +GDKF+SR GQKG+  +    ED+P+ D G+ PD++ 
Sbjct: 881 AEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPYNDLGICPDMIM 935

Query: 938 NPHGFPSRMTIG 949
           NPHGFPSRMT+G
Sbjct: 936 NPHGFPSRMTVG 947



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF-----KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F     + +  ELE  G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 961  EGKFHYGTAFGGSKVQDIQAELERHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKH 1020

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1021 MVQDKMHAR 1029


>gi|380094948|emb|CCC07450.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1150

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 236/912 (25%), Positives = 373/912 (40%), Gaps = 167/912 (18%)

Query: 140 VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
            Y+ P  V +A++ D          + R+P+MLKS +C+L   T AQ+    E P + GG
Sbjct: 111 TYAAPVEVDIAYTRDKSVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGG 170

Query: 200 YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS--------DLGVYIRSVKRDES 251
           YF++GG EK++  LI  + +    I     K  G++ S            Y+  +K+D  
Sbjct: 171 YFVIGGTEKVI--LIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKTYV-VLKKDRI 227

Query: 252 -----------------------ATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEG 288
                                  + N+++  V  G AR+          L         G
Sbjct: 228 VLQHNTLSEPIPIVIVLKAFGGLSDNDIIELVCGGDARYQDD------FLINFDEAGRAG 281

Query: 289 IHTQHDSKVFFGQIFK-----EKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
           ++TQ  +  + G   K      K     R  +  E  D  L N ++ H+     D++ K 
Sbjct: 282 VYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEEGLD-ALANLVIAHVTVEGLDFYPKA 340

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES 395
           + ++ M  ++    Q    +D  D +  + +   G L    +  L KK  S     +   
Sbjct: 341 VYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNI--D 398

Query: 396 DIYAAFRASSIESAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINR---------M 445
           + +     +S        +A G+ +S G N  +Q   +  + +   N+NR         +
Sbjct: 399 NFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQ---SGNWTVKRFNMNRAGITHVLSRL 455

Query: 446 RYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            Y++    + R  S F++ R  S PR L+   WG +C   TP+G  CGL+ +L     I+
Sbjct: 456 SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 515

Query: 504 EYIPSK-VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
             +P + V   I +   S+G +      +   + + ++ L+G    + + +       + 
Sbjct: 516 TNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNG--TPFAVTREPKRFAARF 573

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN---------- 609
           R L+  G   P     V +   E     +  +++ T  GR+ RP   V N          
Sbjct: 574 RTLRRRGWVSP----FVSIHINEH----FSAVHIATDEGRICRPYIIVKNGKSMLKAEHL 625

Query: 610 -------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDFLSNLA 655
                        L +G +E++   E+   D  + ++E      TTH E+     L  +A
Sbjct: 626 KMLQLGQATFDTFLTSGVVEYLDVNEE--NDTLVALQEDQITNSTTHMEIEPFTILGAVA 683

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
            LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P         + 
Sbjct: 684 GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 743

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
            D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+ GY    T 
Sbjct: 744 YDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQ-GY----TN 798

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYV 835
                V G M                         KD   +  A  A+   L  DGL  V
Sbjct: 799 GRRDRVGGIM-------------------------KDEDDKPIAKHAI---LDADGLAQV 830

Query: 836 GAKLNERDPMYSYWKES----------------ENRYVTCRYSGKEEMCVEVVRMSSGFT 879
           G+K+     M    KE+                + R  +  Y   +   ++ V +S    
Sbjct: 831 GSKVESGQTMIK--KETPLDQISTGIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNER 888

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           E   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF+D GL PDI+ NP
Sbjct: 889 ENKLIK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNP 943

Query: 940 HGFPSRMTIGFL 951
           HGFPSRMT+G L
Sbjct: 944 HGFPSRMTVGKL 955



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 23/152 (15%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E+ +  G  F+S  +E      ++ G+++ G +   SG+ G  M+A I+ G + YQRL+H
Sbjct: 969  EKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKH 1028

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    R    +   +    DG + +G    ERD + +Y              
Sbjct: 1029 MVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY-------------- 1072

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            G  ++ +E + +SS  TE   V   C   GY+
Sbjct: 1073 GASQLLLERLMISSDGTE-LDVCQECGLFGYK 1103


>gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster]
          Length = 1146

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 233/913 (25%), Positives = 381/913 (41%), Gaps = 166/913 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 116 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKL 175

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 176 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 235

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM---MQSLHEEGIHTQHDS 295
            G Y     +  S T+++   V    A  + S ++   L+G+    Q+     +   ++ 
Sbjct: 236 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNL 291

Query: 296 KVFFGQ---------IFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY--WDKFLCL 342
           KVF  Q         +  ++ Q         E  + +LT  IL H+  D++    K + +
Sbjct: 292 KVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTT-ILAHVPVDNFNLQMKAIYV 350

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           S M  ++          D  D    + +   GSL    +  L K+         +K+   
Sbjct: 351 SMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK 410

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S
Sbjct: 411 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 463

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  + 
Sbjct: 464 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVE 523

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSL 558
            +     P ++V+         ++ I E            +V ++G ++G  L+     L
Sbjct: 524 ER-----PVMIVAF-----NAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHL 571

Query: 559 VPKLRMLKIVGEKIPK-SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----- 609
           V  LR ++  G      S+   Y +R          +Y+ T  GR+ RP   V N     
Sbjct: 572 VRNLRYMRRKGRMGSYVSVHTSYTQR---------CIYIHTDGGRLCRPYVIVENRRPLV 622

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDF 650
                             L  G IE++   E+   D  I   E      TTH E+     
Sbjct: 623 KQHHLDELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEDQIEDRTTHLEIEPFTL 680

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A L+P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +   
Sbjct: 681 LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKT 740

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++    
Sbjct: 741 IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR--- 797

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T                    + R+   + D    K  F  D         L  D
Sbjct: 798 -YANQT--------------------FDRIMGPMKDALTNKVIFKHDV--------LDTD 828

Query: 831 GLVYVGAKLNER--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           G+V  G ++  +              +P+     +     V   Y G E   +E V +S+
Sbjct: 829 GIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSA 888

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              E   +      I  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++
Sbjct: 889 NAEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMI 943

Query: 937 FNPHGFPSRMTIG 949
            NPHGFPSRMT+G
Sbjct: 944 MNPHGFPSRMTVG 956



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF-----KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F     + +  ELE  G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 970  EGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKH 1029

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1030 MVQDKMHAR 1038


>gi|255569145|ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
           communis]
 gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
           communis]
          Length = 1139

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 251/1010 (24%), Positives = 423/1010 (41%), Gaps = 179/1010 (17%)

Query: 31  VLKMILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLG--APHIASFDFMLDEGLDLAV 88
           +++ ++++  L+AP +K+  DK F   P    EFL   G    H+ SF++ ++ G+   V
Sbjct: 17  LVEQLIDKQKLTAP-IKSAVDK-FQLLP----EFLKVRGLVKQHLDSFNYFVNIGIKKIV 70

Query: 89  ED----IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGP 144
                 ++ ++  IY   L+   V+        P+  +     +  P   R +   Y+ P
Sbjct: 71  RANDRIVSTVDPGIY---LRFKDVRIG-----TPSDIMDGVSEQLSPHMCRLSDKTYAAP 122

Query: 145 FNVTVAWSWDGKAGGTFTKE----VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGY 200
             V V + +      T  ++    +GR+PIML+S+ C L     A+L   GE P + GGY
Sbjct: 123 ILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGY 182

Query: 201 FIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFV 260
           F++ G EK+            I I+    KNR ++ +D    I +     +        +
Sbjct: 183 FVIKGTEKV------------ILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTII 230

Query: 261 TNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQ------------------- 301
                +      + +  + +M  +   G+ +  +     G+                   
Sbjct: 231 QMEKEKMYLCLNQFVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLS 290

Query: 302 IFKEKLQYDLRHLNEVE------ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQG 355
           I+ +  Q  L +L+  E      + D  L N +  H +++  K L ++ M  ++   +  
Sbjct: 291 IYTQ--QKALEYLDGKENRALTILRDVFLAN-VPVHKNNFRPKCLYVAVMLRRMMEAMLN 347

Query: 356 MVQLDSEDSIMLQEIMTGGSLYLQLLKKE--KSGTSAVLKESDIYAAFRASSIESAMTNF 413
              +D +D +  + +   G L + LL ++  K+  + V +  D     +  S    +  +
Sbjct: 348 KDAMDDKDYVGNKRLELSGQL-ISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQY 406

Query: 414 LATGNVSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHRGS-YFQEM 463
           +   N++ G   TL           M   G   M + + R+ Y++    + R S  F++ 
Sbjct: 407 IVRDNITNGLERTLSTGNFDVKRFKMHRKG---MTQVLVRLSYIASLGMMTRVSPQFEKS 463

Query: 464 RS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQIPS 516
           R  S PR L+   WG +CP  TP+G  CGL      + H+TT+ +    I       +  
Sbjct: 464 RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVED 523

Query: 517 VLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATSLVPKLRMLKIVGEKIPKS 575
           + +  G    TP        + +V+ +G I+G +   Q   + + KLR    +GE +   
Sbjct: 524 LELLSGEELHTP-------NSFLVIFNGLILGKHRRPQYFVNSMRKLRRAGKIGEFVS-- 574

Query: 576 LEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN-------------------------- 609
              V++   ++       +YL +  GR+ RP++                           
Sbjct: 575 ---VFVNEKQRA------VYLASDGGRVCRPLVIADRGVSRIKEHHMKELRDGVRTFDDF 625

Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
           L  G IE++   E+    + +   EA P  TTH E+     L   A LIP P  NQSPRN
Sbjct: 626 LRDGLIEYLDVNEENNALVALYEGEATPE-TTHIEIEPFTILGVCAGLIPFPHHNQSPRN 684

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
            YQC MGKQ MG    N  ++    LY L  P  P       + +  D    G NA VAV
Sbjct: 685 TYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 744

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
           +SY+GYD+EDA+++NK+S +RGF   CI    +  +   Y    ++ +    D ++ + +
Sbjct: 745 MSYSGYDIEDAIVMNKASLDRGFGR-CIVMKKYPAIRQKYENGASDRILRP-DRTVERER 802

Query: 790 IFFGVVHYQRLRH-----MVSDKWQTK----DYFGRDPANKALED-KLGPDGLVYVGAKL 839
               V+ Y  L         SD +  K    D  G   ++ ALE+ K  P  L Y G + 
Sbjct: 803 ----VLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENIKYRPSPLSYKGPE- 857

Query: 840 NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNP 899
               P+      S +R           +C++V+                     R  R P
Sbjct: 858 -GESPVIDRVALSSDR--------NNNLCIKVM--------------------IRHTRRP 888

Query: 900 TVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            VGDKF+SR GQKG+C      ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 889 EVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVG 938



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G++Y G + +YSG+ G  +QA IF G ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 982  GFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGR 1041

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              +G + VG    ERD + +Y
Sbjct: 1042 ARNGGLRVGEM--ERDCLIAY 1060


>gi|9759599|dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 258/1020 (25%), Positives = 418/1020 (40%), Gaps = 161/1020 (15%)

Query: 27  LVFKVLKMILNQNTLSAPSLKNLTDKNFGKPPDKQN--------EFLLTLG--APHIASF 76
           L+ K+  M L+Q  L   +  +  DK     P K          EFL   G    H+ SF
Sbjct: 15  LIAKLRAMGLDQEDLDLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSF 74

Query: 77  DFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQ 136
           ++ ++ G+   V+  + I   +   ++ L   K  + EP +       + N   P   R 
Sbjct: 75  NYFINVGIHKIVKANSRITSTV-DPSIYLRFKKVRVGEPSIINVNTVENIN---PHMCRL 130

Query: 137 TRSVYSGPFNVTVAWSWDGKAGGTFTKE----VGRVPIMLKSKRCHLRNLTPAQLIERGE 192
               Y+ P  V + +          + +    +GR+PIML+S RC L      +L   GE
Sbjct: 131 ADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGE 190

Query: 193 HPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR-SVKRDES 251
            P + GGYFI+ G EK+            + I+    KNR ++ SD    I  SV     
Sbjct: 191 CPLDPGGYFIIKGTEKV------------LLIQEQLSKNRIIIDSDKKGNINASVTSSTE 238

Query: 252 ATNNVLHFVTNGSARFMFSHR-----------KSM--------------------CLLGM 280
            T +           ++F HR           K+M                     LL  
Sbjct: 239 MTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPS 298

Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQY------DLRHLNEVEICDYMLTNCILPHLDD 334
           ++    EG++TQ  +  +     K K+ Y      D R L+ +   D  L +  +P  ++
Sbjct: 299 IEECVSEGVNTQKQALDYLEAKVK-KISYGTPPEKDGRALSILR--DLFLAHVPVPD-NN 354

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--KSGTSAVL 392
           +  K   +  M  ++   +     +D +D +  + +   G L + LL ++  K+  S  +
Sbjct: 355 FRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQL-ISLLFEDLFKTMLSEAI 413

Query: 393 KESD--IYAAFRASSIE-SAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMAE 440
           K  D  +    RAS  + S   N  +  ++S G   TL           M   G   M +
Sbjct: 414 KNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKG---MTQ 470

Query: 441 NINRMRYMSHFRAVHRGS-YFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
            + R+ ++     + + S  F++ R  S PR L+   WG +CP  TP+G  CGL+ +L  
Sbjct: 471 VLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLAL 530

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATS 557
              ++       L  +   L    +  L+      P+ + +V+L+G I+G +   Q   +
Sbjct: 531 MTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPD-SFLVILNGLILGKHSRPQYFAN 589

Query: 558 LVPKLRMLKIVGEKIP----KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN---- 609
            + +LR    +GE +     +    VY+   + G    P +    G  R+ +  M     
Sbjct: 590 SLRRLRRAGKIGEFVSVFTNEKQHCVYVA-SDVGRVCRPLVIADKGISRVKQHHMKELQD 648

Query: 610 --------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMP 661
                   +  G IE++   E+    +C+   EA    TTH E+     L  +A LIP P
Sbjct: 649 GVRTFDDFIRDGLIEYLDVNEENNALVCLR-AEAAKADTTHIEIEPFTILGVVAGLIPYP 707

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
             NQSPRN YQC MGKQ MG    N   +    LY L  P  P       + +  D    
Sbjct: 708 HHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGA 767

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY--- 778
           G NA VAV+S++GYD+EDA+++NKSS +RGF   CI     + +   Y+    + +    
Sbjct: 768 GQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGR-CIVMKKIVAMSQKYDNCTADRILIPQ 826

Query: 779 -SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA 837
            +G D   MQ               +  D   T     R P +  +  ++  D +    +
Sbjct: 827 RTGPDAEKMQI--------------LDDDGLATPGEIIR-PNDIYINKQVPVDTVTKFTS 871

Query: 838 KLNERD--PMYSYWKESE------NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCA 889
            L++    P   Y+K  E      +R   C    K ++C++ +                 
Sbjct: 872 ALSDSQYRPAREYFKGPEGETQVVDRVALCS-DKKGQLCIKYI----------------- 913

Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
               R  R P +GDKF+SR GQKG+C +    ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 914 ---IRHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVG 970



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +E G++Y G + +YSG+ G  ++A IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1011 VEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPT 1070

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    +G + VG    ERD + +Y
Sbjct: 1071 EGKSKNGGLRVGEM--ERDCLIAY 1092


>gi|347835281|emb|CCD49853.1| similar to DNA-directed rna polymerase III subunit [Botryotinia
            fuckeliana]
          Length = 1213

 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 249/998 (24%), Positives = 412/998 (41%), Gaps = 155/998 (15%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI SF++ ++  +   V+    +  E+  K
Sbjct: 77   KSLTDP-ISTAKDKWNLVPAFLKVKGLVKQHIDSFNYFVEHEIKDIVKANKRVTSEVDPK 135

Query: 102  TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
               L      + EP+          N+  P E R     Y+ P  V + +          
Sbjct: 136  -FWLEYTDIRVGEPERMDYDDRKPQNEITPNECRLRDMTYAAPIRVDIKYMRGRTIVARK 194

Query: 162  TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
               +GR+PIMLKS +C L      Q+    E   + GGYF+V G EK++ +     +N  
Sbjct: 195  NIAIGRMPIMLKSSKCRLAGKNDRQMAHMNECALDPGGYFVVNGTEKVILVQEQLSKNRV 254

Query: 222  IAIKRNAWKNRGLLFSDL---------GVYIRSVKRDESATNNVLH-----FVTNGSARF 267
            I     A   +G++ + +           Y+   K   S  +N+L       +   +   
Sbjct: 255  II---EADPKKGIVSASVTSSTHERKSKSYVMLKKERISLQHNILTEALPIVIVLKAMGI 311

Query: 268  MFSHRKSMCLLGMMQSLHEE-----------GIHTQHDSKVFFGQIFKEKLQYDL----- 311
               H   + + G  +   +E           G+HTQH +  + G   K   +        
Sbjct: 312  QSDHELLLLVAGSDERYQDEFSVNFEEATKLGVHTQHQALEYIGSRVKMGSRARAPGGGP 371

Query: 312  RHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIML 367
            R  + V      L N I+ H+     D+  K L +  M  ++   +     +D  D +  
Sbjct: 372  RSRSYVNDALEALANIIITHVPVVGLDFRPKALYICFMVRRVLMAMVNPTLVDDRDYVGN 431

Query: 368  QEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSIESAMTNFLATG-- 417
            + +   G L    +  L KK     K     VLK+ +    F A +   +  N++  G  
Sbjct: 432  KRLELAGQLLSLLFEDLFKKFNTDLKMNIDKVLKKPNRGMEFDAYNHMQSHGNYITIGMN 491

Query: 418  -NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRT 473
              +S G  S  +  M+ +G   +   ++R+ Y+S    + R  S F++ R  S PR L+ 
Sbjct: 492  RAISTGNWSLKRFKMERAGVTHV---LSRLSYISALGMMTRISSQFEKTRKVSGPRALQP 548

Query: 474  DAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI 533
              +G +C   TP+G  CGL+ +L     I+ Y   + + ++  VL +  ++ ++   + I
Sbjct: 549  SQFGMLCTSDTPEGEACGLVKNLALMTHITTYDDEEPVKKLTFVLGAEDIVSMSG--KEI 606

Query: 534  PEQ-ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYP 592
             E+ A ++ ++G  +   L +     +   R  + +G +I + + I              
Sbjct: 607  YEKGAYVIFVNGTPLA--LTRQPKKFLNSFRKFRRMG-RISEYISIFINHHST------- 656

Query: 593  GLYLFTGPGRMLRPVMN--------------------------LAAGNIEWIGTFEQVFM 626
             +++ T  GR+ RP++                           L  G +E++   E+   
Sbjct: 657  SVHIATDEGRICRPLIIVENQKPKVTKRHLEELRKGTMDFDDFLYKGLLEYVDCNEE--N 714

Query: 627  DICITMKEAYPG-ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
            D  I ++E Y    TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    
Sbjct: 715  DSNIAIRENYINEATTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAY 774

Query: 686  NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
            N   +    LY +  P  P  +    + +  D  P G NA VAV+S++GYD+EDA++LNK
Sbjct: 775  NQFSRIDTLLYLMVYPQQPMVKTRTIELIKYDKLPAGQNATVAVMSFSGYDIEDALVLNK 834

Query: 746  SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            +S +RGF    +F+    +L+   N                            R +  ++
Sbjct: 835  ASCDRGFGRCQVFRKYSTQLKKYPN----------------------------RSQDRIA 866

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK-------LNERDP-------MYSYWKE 851
            D+       G +    A    LG DG+  VG +       LN+  P       M + +  
Sbjct: 867  DR-----VIGENGKPIAKHRILGTDGIALVGERINAGEVYLNKESPSNPNSTGMGNDFNL 921

Query: 852  SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
            ++ +     Y   +   ++ V +S    E G +      +  R  R P +GDKF+SR GQ
Sbjct: 922  NDMKPAPMGYKLHDHAYIDKVMLSQTENESGVLK-----VQTRQTRRPELGDKFSSRHGQ 976

Query: 912  KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            KG+  +    ED+PF DSG+ PDI+ NPHGFPSRMT+G
Sbjct: 977  KGVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVG 1014



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G++Y G + + SG+ G  + A +FFG ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1048 ILIDNGFSYSGKDFVTSGITGESLPAYVFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQ 1107

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   +  
Sbjct: 1108 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMLSSDAHQ-V 1150

Query: 883  SVTPNCAYIGY 893
             +   C  +GY
Sbjct: 1151 DICETCGLMGY 1161


>gi|312086795|ref|XP_003145218.1| RNA polymerase III 128kD subunit-PA [Loa loa]
          Length = 1040

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 231/914 (25%), Positives = 382/914 (41%), Gaps = 169/914 (18%)

Query: 141 YSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGY 200
           YS P +V + ++   +        +G++P+ML+S +C L+N+  ++L    E P + GGY
Sbjct: 3   YSAPISVDIEYTRGSQRVLRNGLVIGKMPVMLRSSKCVLKNMNESELAHVQECPYDPGGY 62

Query: 201 FIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFV 260
           FI+ G EK+V L+      + I I RN+ K       +L   I S  ++  +      ++
Sbjct: 63  FIIRGSEKVV-LIQEQLSKNRIMIGRNSKK-------ELQCEILSSTQERKSKT----YI 110

Query: 261 TNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG-------------------Q 301
            +   R+   H +    + +       G  + HD     G                   Q
Sbjct: 111 ASKKQRYYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAVGLEEKFVAAMAPSIEECASHQ 170

Query: 302 IFKEK--LQY-----DLRHL------------NEVEICDYMLTNCILPHL----DDYWDK 338
           I  ++  LQY      +R               E E  D+ L+N ++ H+     +   K
Sbjct: 171 IVTQEGALQYIASKVKMRKFGPFASGTSSTLPREHEAIDF-LSNLMIAHVPCPDGNMKMK 229

Query: 339 FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKE 394
            + L  M  +L     G  + D  D    + +   GSL    +  + K+  S    +   
Sbjct: 230 AIYLGLMIRRLMQAEVGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADN 289

Query: 395 S---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM 445
           S         DI    R   I +A+ + LATGN +  +      M+  G   + + ++R+
Sbjct: 290 SLGKTLAAPLDIVKHMRQDLITNALVDALATGNWTIKRFK----MERQG---VTQVLSRL 342

Query: 446 RYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     IS
Sbjct: 343 SYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLAL---IS 399

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL--MVMLDGRIVGYILD-QIATSLVP 560
                     +  +L + G+  +  +  S     +  +V L+G IVG  +D Q   S + 
Sbjct: 400 HITTDSDEEPVIRLLYNSGVEDVKSLHFSAIHSPVYHIVFLNGVIVGLTIDPQRIVSTIR 459

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG------- 613
            +R   ++ E +  S                  +Y+ +  GR+ RP + +  G       
Sbjct: 460 AVRRHGLLNEFVSVSTN-----------AAQRSVYIASDGGRLCRPYIIVKNGVPQVTQE 508

Query: 614 NIEWIGTFEQVFMD-------------------ICITMKEAYPGITTHRELSKTDFLSNL 654
           +IE +    ++F D                   I +   +  P  TTH E+     L   
Sbjct: 509 HIEELKKGCRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKPN-TTHLEIEPFTLLGVC 567

Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
           A LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y L  P  P  +    +  
Sbjct: 568 AGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFC 627

Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
           + +  P G NA++AV+SY+GYD+EDA++LNK+S +RG+    ++K          N    
Sbjct: 628 NFEKLPAGQNAVIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFD 687

Query: 775 ETMYSGVDGSM-----------MQAQIFFGV-VHYQRL---RHM--VSDKWQTKDYFGRD 817
             M   V+ +             +  ++ G  +H +++   +HM  VS +         D
Sbjct: 688 RLMGPTVEATTRKPIYKHQVLDQEGIVYVGACIHSKQVMINKHMPVVSTEAGATTSSNND 747

Query: 818 PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
             N +  +      + Y    +  R+P+ SY +      V   Y+  +   ++V+     
Sbjct: 748 GTNVSSHE------VEYKDVSVVYRNPVPSYAER-----VLLTYNEDDAHLIKVL----- 791

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
                           R  R P +GDKF+SR GQKG+C +    ED+PF D G+ PD++ 
Sbjct: 792 ---------------LRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMCPDMIM 836

Query: 938 NPHGFPSRMTIGFL 951
           NPHG+PSRMT+G L
Sbjct: 837 NPHGYPSRMTVGKL 850



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           G+NY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 887 GFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 946

Query: 828 GPDGLVYVGAKLNERDPMYSY 848
             DG + +G    ERD + +Y
Sbjct: 947 ARDGGLRLGEM--ERDCLIAY 965


>gi|408388464|gb|EKJ68148.1| hypothetical protein FPSE_11615 [Fusarium pseudograminearum CS3096]
          Length = 1157

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 247/975 (25%), Positives = 393/975 (40%), Gaps = 155/975 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++F ++  +   V     I  E+      L      + +P+           +  P
Sbjct: 48  HIDSYNFFVEHEIKDIVRANRTIRSEV-DSNFWLEFTDIRVDKPRRQDWQDAKSHTEVTP 106

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     Y+ P +V + +  D +        +GR+P+MLKS  C L      ++ E  
Sbjct: 107 MECRLRDMTYAAPISVDIQYIRDKQRIVRKNVPLGRMPVMLKSSICRLGGANNTKMEEMN 166

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDES 251
           E P + GGYFI+GG EK+            I I+    KNR ++ +D    I S     S
Sbjct: 167 ECPLDPGGYFIIGGTEKV------------ILIQEQLSKNRIIVEADEKNNIISASVTSS 214

Query: 252 A-TNNVLHFVTNGSARFMFSHR------------KSMCLLGMMQSLH------------- 285
                   +VT    R + +H             K++  L  M+ +              
Sbjct: 215 THERKSKTYVTLKKDRILLTHNVLVEGIPIVIILKALGGLSDMEIMQLVAGSDGRYQDEF 274

Query: 286 --------EEGIHTQHDSKVFFGQIFKEKLQYDL----RHLNEVEICDYMLTNCILPHLD 333
                   + G+ TQH +  + G   K   +  +       N VE     L N ++ H+ 
Sbjct: 275 LVNFDEATKVGVFTQHQALEYIGTRVKMAPRRGIFGPQVRRNHVEEGLDALANLVIAHVP 334

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--KSG 387
               D++ K + ++ MT ++         +D  D +  + +   G L L LL ++  K  
Sbjct: 335 IEGLDFYPKAIYVAMMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQL-LSLLFEDLFKQF 393

Query: 388 TSAVLKESDIYAAFRASSIESAMTNFLA--TGNVSAGKNSTLQL---------MQASGFV 436
           T+ V    D +      ++     N ++    N+  G N  +Q          M  +G  
Sbjct: 394 TTNVRMSIDKFLKKNNRAVPLDAVNMISNHANNIGYGINRAIQTGNWNVKRFNMNRAG-- 451

Query: 437 IMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
            +   ++R+ Y++    + R  S F++ R  S PR L+   WG +C   TP+G  CGL+ 
Sbjct: 452 -VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVK 510

Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILD 552
           +L     I+  +  + + +    L   G+ P+      +   E + ++ ++G    + L 
Sbjct: 511 NLALMTHITTNVDEEPVKRWIFTL-DAGVEPIRNFSGAEMHREGSYIIHVNG--TPFALT 567

Query: 553 QIATSLVPKLRMLK-------IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM-- 603
           +       K R ++        VG  I      V++   E G    P + +  G  ++  
Sbjct: 568 RYPKRFAQKFRTMRRRGWISPFVGININTHFNAVHIATDE-GRICRPYIIVKNGKQKLKP 626

Query: 604 --LRPVMN--------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDFLS 652
             LR +          L  G +E++   E+   D  IT+ E      TTH E+     L 
Sbjct: 627 EHLRLLQMGKATFDDFLNRGIVEYLDVNEE--NDALITIYEHQVTQSTTHLEIEPFTVLG 684

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
            +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P        
Sbjct: 685 AVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQ 744

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
            +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+   N  
Sbjct: 745 LIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYTTELQKYPNGR 804

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
                                       R  + D     +  G++       + L  DGL
Sbjct: 805 ----------------------------RERIGDPEMEGE--GKNKRRITKHEALDDDGL 834

Query: 833 VYVGAKLNERDPMYSYWKES----------------ENRYVTCRYSGKEEMCVEVVRMSS 876
             VG K++  + M    KE+                E R  +  Y   +   ++ V +S 
Sbjct: 835 AIVGYKVHSGEAMVK--KETPLDQTSTGIGLDRGPGEFRDSSVSYRIADPAYIDKVMISQ 892

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
             TE  +       +  R  R P +GDKF+SR GQKG+  +    EDLPF+DSGL PDI+
Sbjct: 893 --TEKDTT---VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDSGLSPDII 947

Query: 937 FNPHGFPSRMTIGFL 951
            NPHGFPSRMT+G L
Sbjct: 948 MNPHGFPSRMTVGKL 962



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 23/149 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            +  G  F+S  +E      ++ G+++ G +   SG+ G  ++A +F G ++YQRL+HMV 
Sbjct: 979  YGFGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLKHMVQ 1038

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1039 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GAS 1082

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            ++ +E + +SS  TE   +   C   GY+
Sbjct: 1083 QLLLERLMISSDGTE-IDICQQCGLFGYK 1110


>gi|261333952|emb|CBH16946.1| RNA polymerase I second largest subunit,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1545

 Score =  228 bits (580), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 72/591 (12%)

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
            +   L TGN +  +       Q +G+ +M E++N  R       VHRG    EMRSS+ R
Sbjct: 762  LNRLLLTGNFALDREEDFYSPQTAGWAVMTEHLNFYRSFEQLMCVHRGKSIAEMRSSDVR 821

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLV----SLGMLP 525
            +   +A+GFIC VH+PDG  CG+LNHL+ +  +S   P    +Q   +L      L  + 
Sbjct: 822  RYPCEAYGFICMVHSPDGEDCGVLNHLSISTVLSAS-PRVGSSQYKILLAFIEEELKNVR 880

Query: 526  LTPVIQSIPEQ---ALMVMLDGRIVGYILDQIATS----LVPK--LRMLKIVG------- 569
             T  + S  +Q    + V L+GR++GY+    A S    L  K  LR   +VG       
Sbjct: 881  NTTSLISCVDQLVGTVPVWLEGRLLGYLSPNEALSASKALTQKKALRSRGVVGVTGIVRR 940

Query: 570  EKIPK--SLEIVYLKRPEKGMGLYP-GLYLFTGPGRMLRPVMNLAAGN--------IEWI 618
            + I    ++E+VY+    K     P GLY+F   GR++RPV+ + + +        + ++
Sbjct: 941  DSISSLNTMEVVYIPPGSKD----PMGLYIFYQYGRLMRPVLQIESPSRGGDLPFPVVYL 996

Query: 619  GTFEQVFMDICITMKEAYPGITTHR------ELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
            GT+EQ + DI     + + G    R      E +  + LS  ++ IP  + N SPRN++Q
Sbjct: 997  GTWEQSWRDIAAVPSDLFDGFDQLRRKYEFMEQNGFNILSFTSSTIPFFEHNCSPRNLFQ 1056

Query: 673  CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
            C + KQT GT      ++   KL+R+  P     R +  D   +D+  +G NA+VA+++Y
Sbjct: 1057 CGLSKQTAGTQLQTQAWRRDAKLFRMYYPQRYISRTLPMDYFGLDDVSLGVNAVVAILAY 1116

Query: 733  TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV-DGSMMQAQIF 791
            TGYD++DAMILN ++ + G  +  +  +  ++     +       ++ + DG     ++ 
Sbjct: 1117 TGYDLDDAMILNSTAKQFGMLNAGVTVAKIVKASGKGDSNDVFVFHNCLPDGQPFTPELD 1176

Query: 792  FGVVHYQRLRHMVSDKWQTKD---YFGRDPANK--ALEDKLGPDGLVYVGAKLNER-DPM 845
                     RH +  K    +   YF  D  +K  +L D       VY  AK  E  DP+
Sbjct: 1177 ---------RHGLPKKRAVPNATAYFSFDTDHKYPSLRDS----SAVYCCAKRFEYIDPL 1223

Query: 846  YSYWKESENRYVTCRY----SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
             +       R+   ++     G++     V+ ++    +     P    + +RI R P +
Sbjct: 1224 TNEKTYEYTRHQITKWRHFDKGEDAWVHSVIPLTYDGPD-----PTSVLVLFRIPRPPVI 1278

Query: 902  GDKFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            GDKF+SR GQKG   +   + DLPF T  G+ PDI+ NPH FPSRMT+G +
Sbjct: 1279 GDKFSSRHGQKGTLPLDIRSHDLPFSTRDGITPDIIINPHAFPSRMTVGMV 1329



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYN YG E +  G+ G  ++A++  G+  YQRLRHMVSDKWQ +
Sbjct: 1371 GYNRYGREKLIDGITGEEIEAEVLVGISGYQRLRHMVSDKWQAR 1414



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERG-EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
           +G +P M+   RC LR +       R  E   E GGYF++ G E+++R LI  R N P+ 
Sbjct: 401 LGELPEMVLGARCALRGVNQRLDHFRALEEQKEVGGYFVLRGGERILRNLILQRCNVPLN 460

Query: 224 IKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
           I+R  +      FS   V IR  +       N  ++ T G   F F+ R
Sbjct: 461 IERERFATVDSFFSPRAVIIRCKRPSGLTVQNYFYYATKGEVIFTFARR 509


>gi|430811324|emb|CCJ31247.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1167

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 245/933 (26%), Positives = 390/933 (41%), Gaps = 188/933 (20%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N   P E R     YS P  V + ++   +       ++GR+PIML+S +C L N T  Q
Sbjct: 122 NSIAPHECRLRDLTYSAPIMVDIEYTRGKQVVRRKGVQIGRLPIMLRSNKCILFNKTETQ 181

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           +I   E P + GGYFIV G EK++ +     +N  I     A   +GL+ + +   I S 
Sbjct: 182 IIRMNECPLDPGGYFIVKGTEKVILVQEQLSKNRIIV---EAEPKKGLVQASV---ISST 235

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR------------KSMCLLGMMQSLH--------- 285
              +S T     +V   +A+    H             K+M      + L          
Sbjct: 236 HERKSKT-----YVLTKNAKIYLKHNSIAEDVPIVLIFKAMGFQSDQEILELIAGSDPNY 290

Query: 286 --------EE----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILP 330
                   EE     I+TQ  +  + G   +I ++  +   R     E  + +L   +L 
Sbjct: 291 QDMFAINIEECAKLKIYTQQQALEYLGARVKISRKNSELSQRRPPSEEALE-VLAAIVLA 349

Query: 331 HLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-- 384
           H+     ++  K +  + MT ++   ++    +D  D +  + +   G L L LL ++  
Sbjct: 350 HIPVENLNFRPKIIYFAIMTRRVLMAIKNPKMVDDRDYVGNKRLELAGQL-LSLLFEDLF 408

Query: 385 -------KSGTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQL 429
                  K     VLK+ +    F A          I S M   ++TGN S  +      
Sbjct: 409 KTFNRNLKLNIDKVLKKPNRTQEFDAYNQISIHGDHITSGMIRAISTGNWSLKRFK---- 464

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDG 487
           M+ +G   +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +CP  TP+G
Sbjct: 465 MERAG---VTHVLSRLSYISALGMMTRISSQFEKTRKISGPRALQPSQFGMLCPSDTPEG 521

Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVL-VSLGMLPLTPVIQSIPEQALMVMLDGRI 546
             CGL+ +L     I+     + + ++  VL      + L    +       ++ L+G I
Sbjct: 522 ESCGLIKNLALMTHITTDNDEEPIEKLAFVLGTEEKDISLITGHELYAPGTYVIYLNGII 581

Query: 547 VGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           +G  + +  T  V   R L+  G+ I + + I            Y  +++ +  GR+ RP
Sbjct: 582 LG--ITRFPTIFVSNFRKLRRKGQ-ISEFISIHINHH-------YSSVHIASDGGRICRP 631

Query: 607 VMNLAAG-------NIEWIGTFEQVFMDICI----------TMKEAYPGI--------TT 641
           ++ +  G       ++E +   +  F D                ++Y  I        TT
Sbjct: 632 LIIVENGKSKVTSQHLEALKAGKMTFDDFLKRGLVEYLDVNEENDSYISIYENKISESTT 691

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P
Sbjct: 692 HLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAWNQLLRIDSLLYLMIYP 751

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P  +    D +  D  P G NAI+AV+S++GYD+EDA+ILNK+S +RGF    + +  
Sbjct: 752 QQPLVKTKTIDLIGYDKLPAGQNAIIAVMSFSGYDIEDALILNKASIDRGFGRCQVIRK- 810

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRL----RHMVSDKWQTKDYFGRD 817
                     Y T T+    +GS            Y RL    R+     W+        
Sbjct: 811 ----------YAT-TIKRYANGS------------YDRLEGPSRNEGDVAWKY------- 840

Query: 818 PANKALEDKLGPDGLVYVGAK-------LNERDPMYS--------------YWKESENRY 856
              +ALE+    DGL  VG K       +N++ P  +               WK S    
Sbjct: 841 ---EALEE----DGLAGVGEKIESGQIYINKQIPTNANDNTIATRIQQHELSWKAS---- 889

Query: 857 VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
               Y   E   ++ + +++  T+       C     R  R P +GDKF+SR GQKG+C 
Sbjct: 890 -PMIYKSFEPGYIDKIMLTT--TDSDQTLIKCL---VRQTRRPELGDKFSSRHGQKGVCG 943

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +    ED+PF  +G+ PDI+ NPHGFPSRMT+G
Sbjct: 944 LIVQQEDMPFDQNGITPDIIMNPHGFPSRMTVG 976



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 17/132 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E+GY+Y G + + SG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1010 ILIENGYSYSGKDELTSGITGESLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAILTRQ 1069

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   +  
Sbjct: 1070 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMLSSDAFK-V 1112

Query: 883  SVTPNCAYIGYR 894
             +   C  IGY+
Sbjct: 1113 DICEACGLIGYK 1124


>gi|409075839|gb|EKM76215.1| hypothetical protein AGABI1DRAFT_122788 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 1142

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 231/908 (25%), Positives = 372/908 (40%), Gaps = 145/908 (15%)

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
           K  P E R   + YS P  VT+ ++  GK        +GR+PIML+S +C L   T AQL
Sbjct: 103 KVTPHECRLRDTTYSAPIIVTIQYTR-GKNIVQRNVNIGRLPIMLRSNKCVLTGRTEAQL 161

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD--LGVYIRS 245
               E P + GGYF+V G EK+            I ++    KNR ++ +D   GV   S
Sbjct: 162 ARMSECPLDPGGYFVVKGTEKV------------ILVQEQLSKNRIIVETDNVKGVVQAS 209

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFF-----G 300
                        +V     R    H      L ++ +L   G+  Q D ++        
Sbjct: 210 CTSSTHGGLKSKTYVATKKGRIYLRHNSIHEDLPIVIALKALGV--QSDKEILLLTAGNT 267

Query: 301 QIFKEKLQYDLRHLNEVEI------CDYM------------------------LTNCILP 330
           + +K     +L    ++ I       +Y+                        L   +L 
Sbjct: 268 EAYKIAFSANLEDAAKLGIFTRQQALEYIGTRVKVNRRVVGPRRPAWEEALEALATIVLA 327

Query: 331 HLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-- 384
           H+     D   K + ++ MT ++   +     +D  D +  + +   G L L LL ++  
Sbjct: 328 HVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDYVGNKRLELAGQL-LALLFEDLF 386

Query: 385 -------KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQAS 433
                  KS    VLK+      F A +      + L  G V A       L    M+ +
Sbjct: 387 KTYNSNLKSAIDKVLKKPSRTTEFDAYNTMQFQGDHLTAGFVRAISTGNWSLKRFKMERA 446

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   +   ++R+ ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 447 G---VTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACG 503

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           L+ +L     I+  +  + + Q+ + ++ +  + L    +       +V ++G I+G I 
Sbjct: 504 LVKNLALMTHITTDVEEEPIIQL-AFMLGVEDIRLATGTEIYGPNTFVVNVNGTIIGLIR 562

Query: 552 DQIA-TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN- 609
             +   S   KLR  +   E +      +Y+    +       +++ +  GR+ RP++  
Sbjct: 563 HPMRFVSQFRKLRRARRFSEFVS-----IYVNHHHR------TVHIASDGGRICRPMIIV 611

Query: 610 -------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
                                    L  G +E++   E+    I +   +  P  TTH E
Sbjct: 612 EHGRSKVTPEHATYLKDGTATFDDFLRKGVVEYLDVNEENDTYIALYESDITPH-TTHLE 670

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY    P  P
Sbjct: 671 IEPFTLLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQP 730

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             +    + +  D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    + +     
Sbjct: 731 MVKTKTIELIGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATL 790

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF--GRDPANKA 822
           +    N        + VD + M A+  + ++    L   V ++    D +   + P N +
Sbjct: 791 IRKYPNGTYDRLADAPVDENGMTAK-RYDIIQPDGLAG-VGERVDPGDIYVNKQSPTNAS 848

Query: 823 LEDKLGPDGLV-YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
                G    V Y    L  + P+  Y  +     V    +  E+  ++V+         
Sbjct: 849 DNSFTGQAASVPYKNTPLTYKSPVAGYIDK-----VMVTDTENEQTLIKVL--------- 894

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                       R  R P +GDKF+SR GQKG+C +    ED+PF D G+ PD + NPHG
Sbjct: 895 -----------IRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHG 943

Query: 942 FPSRMTIG 949
           FPSRMT+G
Sbjct: 944 FPSRMTVG 951



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I +E+G++Y G + + SG+ G  ++A ++FG ++YQ+
Sbjct: 962  GVLTGKLQYGTAFGGSKVEDMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQK 1021

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            L+HMV DK   +    R    +   +    +G + +G    ERD +  Y           
Sbjct: 1022 LKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEM--ERDCLIGY----------- 1068

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
               G  ++ +E + +SS   E  +    C  +GY
Sbjct: 1069 ---GATQLLLERLMISSDIFEVNACQ-ECGLMGY 1098


>gi|336272055|ref|XP_003350785.1| hypothetical protein SMAC_02456 [Sordaria macrospora k-hell]
          Length = 1117

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 236/912 (25%), Positives = 373/912 (40%), Gaps = 167/912 (18%)

Query: 140 VYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGG 199
            Y+ P  V +A++ D          + R+P+MLKS +C+L   T AQ+    E P + GG
Sbjct: 111 TYAAPVEVDIAYTRDKSVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGG 170

Query: 200 YFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFS--------DLGVYIRSVKRDES 251
           YF++GG EK++  LI  + +    I     K  G++ S            Y+  +K+D  
Sbjct: 171 YFVIGGTEKVI--LIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKTYV-VLKKDRI 227

Query: 252 -----------------------ATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEG 288
                                  + N+++  V  G AR+          L         G
Sbjct: 228 VLQHNTLSEPIPIVIVLKAFGGLSDNDIIELVCGGDARYQDD------FLINFDEAGRAG 281

Query: 289 IHTQHDSKVFFGQIFK-----EKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKF 339
           ++TQ  +  + G   K      K     R  +  E  D  L N ++ H+     D++ K 
Sbjct: 282 VYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEEGLD-ALANLVIAHVTVEGLDFYPKA 340

Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES 395
           + ++ M  ++    Q    +D  D +  + +   G L    +  L KK  S     +   
Sbjct: 341 VYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNI--D 398

Query: 396 DIYAAFRASSIESAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINR---------M 445
           + +     +S        +A G+ +S G N  +Q   +  + +   N+NR         +
Sbjct: 399 NFFKKPNRTSTYDPHGAIMANGHYISHGLNRAIQ---SGNWTVKRFNMNRAGITHVLSRL 455

Query: 446 RYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            Y++    + R  S F++ R  S PR L+   WG +C   TP+G  CGL+ +L     I+
Sbjct: 456 SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 515

Query: 504 EYIPSK-VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
             +P + V   I +   S+G +      +   + + ++ L+G    + + +       + 
Sbjct: 516 TNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNG--TPFAVTREPKRFAARF 573

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN---------- 609
           R L+  G   P     V +   E     +  +++ T  GR+ RP   V N          
Sbjct: 574 RTLRRRGWVSP----FVSIHINEH----FSAVHIATDEGRICRPYIIVKNGKSMLKAEHL 625

Query: 610 -------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDFLSNLA 655
                        L +G +E++   E+   D  + ++E      TTH E+     L  +A
Sbjct: 626 KMLQLGQATFDTFLTSGVVEYLDVNEE--NDTLVALQEDQITNSTTHMEIEPFTILGAVA 683

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
            LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P         + 
Sbjct: 684 GLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIH 743

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
            D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+ GY    T 
Sbjct: 744 YDKLPAGQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQ-GY----TN 798

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYV 835
                V G M                         KD   +  A  A+   L  DGL  V
Sbjct: 799 GRRDRVGGIM-------------------------KDEDDKPIAKHAI---LDADGLAQV 830

Query: 836 GAKLNERDPMYSYWKES----------------ENRYVTCRYSGKEEMCVEVVRMSSGFT 879
           G+K+     M    KE+                + R  +  Y   +   ++ V +S    
Sbjct: 831 GSKVESGQTMIK--KETPLDQISTGIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNER 888

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           E   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF+D GL PDI+ NP
Sbjct: 889 ENKLIK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSDKGLRPDIIMNP 943

Query: 940 HGFPSRMTIGFL 951
           HGFPSRMT+G L
Sbjct: 944 HGFPSRMTVGKL 955



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 23/152 (15%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E+ +  G  F+S  +E      ++ G+++ G +   SG+ G  M+A I+ G + YQRL+H
Sbjct: 969  EKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRLKH 1028

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    R    +   +    DG + +G    ERD + +Y              
Sbjct: 1029 MVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY-------------- 1072

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            G  ++ +E + +SS  TE   V   C   GY+
Sbjct: 1073 GASQLLLERLMISSDGTE-LDVCQECGLFGYK 1103


>gi|340376544|ref|XP_003386792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Amphimedon
           queenslandica]
          Length = 1131

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 244/960 (25%), Positives = 411/960 (42%), Gaps = 139/960 (14%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           H+ SF++ +   +       DL + D  P     Y K L + +    + E       +  
Sbjct: 42  HLDSFNYFVSTDIKKIVRANDLVISDFDP---SFYLKYLDIYVGTPLVEESLNVCTQIT- 97

Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
                 P E R     YS P  V + ++   +        +G++PIML+S  C L N   
Sbjct: 98  ------PQECRLRDMTYSAPVTVDIEYTRGTQRVRRKGFSIGQLPIMLRSANCVLSNKNQ 151

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LG 240
            +L +  E P + GGYF+V G EK+            I I+    KNR ++  D    +G
Sbjct: 152 EELAKLKECPIDPGGYFVVRGTEKV------------ILIQEQLSKNRIIVDYDKKGNIG 199

Query: 241 VYIRSVKRDESATNNVLH-----FVTNGS------------ARFMFSHRKSMCLLGMMQS 283
             + S   D  +  N++      ++ + S            A  + S ++ + ++G   S
Sbjct: 200 CSVTSSTHDRKSKTNLIFKGNQFYLKHNSFTDDIPVVLVFKAMNIISDQEIVQMIGCEDS 259

Query: 284 LH-------EE----GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL 332
           +        EE     ++TQ  +    G   ++++    R  ++ E    +L++ +L H+
Sbjct: 260 VLSVFAPSLEECAMLNVYTQKKALEVVGAKTRKRMYGKPR--SKAEEAHDVLSHYVLAHI 317

Query: 333 ----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE 384
               +D+  K   LS M  ++  +     ++D  D    + +   G L    +  L K+ 
Sbjct: 318 PVESNDFKIKASFLSLMIRRVI-LATAKDEVDDRDYYGNKRLELAGPLLSLLFEDLFKRY 376

Query: 385 KSGTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGF 435
            S    ++  +         D+    + S I   +   L+TGN +  +      M+  G 
Sbjct: 377 NSELKKIIDRTLAKKRTQPFDVVCHMKNSIITQGIETALSTGNWTLRRFK----MERGG- 431

Query: 436 VIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLL 493
             + + ++RM +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+
Sbjct: 432 --VTQVLSRMSFIACLGHMTRITSQFEKTRKISGPRSLQPSQWGMVCPSDTPEGEACGLV 489

Query: 494 NHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGYIL 551
            +L     I+  +       I  +  +LG+  +  +   +    ++ +V+L+G IVG + 
Sbjct: 490 KNLALISHITTDVDE---GPIRRLAFNLGVEDIRYLSGEELSSNESYLVLLNGNIVGVV- 545

Query: 552 DQIATSLVPKLRMLKIVGEKIP-KSLEIVYLKR-----PEKGMGLYPGLYLFTGPGRMLR 605
            +   S V   R+L+  G      S+   +  R      + G    P + +  G  R+  
Sbjct: 546 -RYYASFVRYFRLLRRNGRMNEFVSISTNHHNRTVSISSDSGRVCRPYIIVINGVPRVTS 604

Query: 606 PVMN-----------LAAGNIEWIGTFEQVFMDICITMKEA-YPGITTHRELSKTDFLSN 653
             ++           LA G IE++   E+   D  I + E+     TTH E+     L  
Sbjct: 605 HHIDLISKGMEFEDFLAKGLIEYLDVNEE--NDSMIALYESDINSSTTHLEIEPFTILGV 662

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
            A LIP P  NQSPRN YQC MGKQ +GT   N + +    L  +  P +P  +    D 
Sbjct: 663 CAGLIPYPHHNQSPRNTYQCAMGKQAIGTIAYNQQNRIDTLLNIMIYPQAPIVKTRTIDL 722

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
           +  D  P G NA+VA++ Y+GYD+EDA+ILN++S +RG A   + +     L+   N   
Sbjct: 723 IKFDKLPAGFNAVVAIMCYSGYDIEDALILNRASLDRGLARSLVCRKQTCSLKRYSNMTF 782

Query: 774 TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLV 833
            + +  G    M   +  +        +H   D+        R  + + L +KL P    
Sbjct: 783 DKIL--GPSREMDTGKPIW--------KHTPLDEDGIVGVAERVSSGQVLINKLVPQ--- 829

Query: 834 YVGAKLNERDPMYSYWKESENRYVTC--RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
            V   L       +    ++N Y +C   Y G  ++    V +++   E   +      I
Sbjct: 830 -VTQSLCPGG-GGAAAGGADNNYKSCPVSYRGPTDVYANNVLITNNNEESYLIKILLESI 887

Query: 892 GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
                R P +GDKF+SR GQKG+C +  P ED+PFTD GL PDI+ NPHGFPSRMT+G L
Sbjct: 888 -----RIPEIGDKFSSRHGQKGVCGLIVPQEDMPFTDQGLCPDIIMNPHGFPSRMTVGKL 942



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            + +G+NY G + + SG+ G  ++A I+ G+V+YQRL+HMV DK   +    R    +   
Sbjct: 976  ISNGFNYVGKDILTSGITGEPLEAYIYTGIVYYQRLKHMVLDKMHARSRGPRVILTRQPT 1035

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD + SY
Sbjct: 1036 EGRSRDGGLRLGEM--ERDCLISY 1057


>gi|19913065|emb|CAD26832.1| RNA polymerase I second largest subunit [Trypanosoma brucei brucei]
          Length = 1596

 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 72/591 (12%)

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
            +   L TGN +  +       Q +G+ +M E++N  R       VHRG    EMRSS+ R
Sbjct: 813  LNRLLLTGNFALDREEDFYSPQTAGWAVMTEHLNFYRSFEQLMCVHRGKSIAEMRSSDVR 872

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLV----SLGMLP 525
            +   +A+GFIC VH+PDG  CG+LNHL+ +  +S   P    +Q   +L      L  + 
Sbjct: 873  RYPCEAYGFICMVHSPDGEDCGVLNHLSISTVLSAS-PRVGSSQYKILLAFIEEELKNVR 931

Query: 526  LTPVIQSIPEQ---ALMVMLDGRIVGYILDQIATS----LVPK--LRMLKIVG------- 569
             T  + S  +Q    + V L+GR++GY+    A S    L  K  LR   +VG       
Sbjct: 932  NTTSLISCVDQLVGTVPVWLEGRLLGYLSPNEALSASKALTQKKALRSRGVVGVTGIVRR 991

Query: 570  EKIPK--SLEIVYLKRPEKGMGLYP-GLYLFTGPGRMLRPVMNLAAGN--------IEWI 618
            + I    ++E+VY+    K     P GLY+F   GR++RPV+ + + +        + ++
Sbjct: 992  DSISSLNTMEVVYIPPGSKD----PMGLYIFYQYGRLMRPVLQIESPSRGGDLPFPVVYL 1047

Query: 619  GTFEQVFMDICITMKEAYPGITTHR------ELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
            GT+EQ + DI     + + G    R      E +  + LS  ++ IP  + N SPRN++Q
Sbjct: 1048 GTWEQSWRDIAAVPSDLFDGFDQLRRKYEFMEQNGFNILSFTSSTIPFFEHNCSPRNLFQ 1107

Query: 673  CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
            C + KQT GT      ++   KL+R+  P     R +  D   +D+  +G NA+VA+++Y
Sbjct: 1108 CGLSKQTAGTQLQTQAWRRDAKLFRMYYPQRYISRTLPMDYFGLDDVSLGVNAVVAILAY 1167

Query: 733  TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV-DGSMMQAQIF 791
            TGYD++DAMILN ++ + G  +  +  +  ++     +       ++ + DG     ++ 
Sbjct: 1168 TGYDLDDAMILNSTAKQFGMLNAGVTVAKIVKASGKGDSNDVFVFHNCLPDGQPFTPELD 1227

Query: 792  FGVVHYQRLRHMVSDKWQTKD---YFGRDPANK--ALEDKLGPDGLVYVGAKLNER-DPM 845
                     RH +  K    +   YF  D  +K  +L D       VY  AK  E  DP+
Sbjct: 1228 ---------RHGLPKKRAVPNATAYFSFDTDHKYPSLRDS----SAVYCCAKRFEYIDPL 1274

Query: 846  YSYWKESENRYVTCRY----SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
             +       R+   ++     G++     V+ ++    +     P    + +RI R P +
Sbjct: 1275 TNEKTYEYTRHQITKWRHFDKGEDAWVHSVIPLTYDGPD-----PTSVLVLFRIPRPPVI 1329

Query: 902  GDKFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            GDKF+SR GQKG   +   + DLPF T  G+ PDI+ NPH FPSRMT+G +
Sbjct: 1330 GDKFSSRHGQKGTLPLDIRSHDLPFSTRDGITPDIIINPHAFPSRMTVGMV 1380



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYN YG E +  G+ G  ++A++  G+  YQRLRHMVSDKWQ +
Sbjct: 1422 GYNRYGREKLIDGITGEEIEAEVLVGISGYQRLRHMVSDKWQAR 1465



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERG-EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
           +G +P M+   RC LR +       R  E   E GGYF++ G E+++R LI  R N P+ 
Sbjct: 452 LGELPEMVLGARCALRGVNQRLDHFRALEEQKEVGGYFVLRGGERILRNLILQRCNVPLN 511

Query: 224 IKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
           I+R  +      FS   V IR  +       N  ++ T G   F F+ R
Sbjct: 512 IERERFATVDSFFSPRAVIIRCKRPSGLTVQNYFYYATKGEVIFTFARR 560


>gi|396477501|ref|XP_003840283.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
            maculans JN3]
 gi|312216855|emb|CBX96804.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
            maculans JN3]
          Length = 1257

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 241/929 (25%), Positives = 375/929 (40%), Gaps = 190/929 (20%)

Query: 125  HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
            H +   P E R     Y+ P  V + ++            +GR+PIMLKS +C L   + 
Sbjct: 220  HRSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIRIGRMPIMLKSSKCVLAGKSD 279

Query: 185  AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
             ++    E P + GGYFI  G EK++  L+  + N          KNR ++ S  G+   
Sbjct: 280  REMAVMEECPLDPGGYFITRGQEKVI--LVQEQLN----------KNRVIVESAKGIMQA 327

Query: 245  SVKRDESATNNVLHFVTNGSARFM--------------------FSHRKSMCLLGMMQSL 284
            SV           + +      F+                     S ++ + ++    S 
Sbjct: 328  SVTSSTHERRTKTYVIQKKGLMFLRHNTLSEEVPIVFALKALGVHSDKEILLMVAGDDSA 387

Query: 285  HE------------EGIHTQHDSKVFFG---QIFKEKLQYD-LR--HLNEVEICDYMLTN 326
            ++            E IHTQ  +  + G   ++ K+ L    +R  HL  +E     L+N
Sbjct: 388  YQDNFAINFEACAREKIHTQEKALEYIGHRVRLVKKPLGASRMRNYHLEAIEC----LSN 443

Query: 327  CILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
             +LPH+     +Y  K L ++ M  ++   +Q    +D  D +  + +   G +   L +
Sbjct: 444  VVLPHVPVEGTNYRPKALYIALMARRVLMAMQDPKLVDDRDYVGNKRLELSGQMLSLLFE 503

Query: 383  KE--------KSGTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNST 426
                      K     VLK+ +    F A        S I   +   +ATGN S  +   
Sbjct: 504  DHFKRFNHDFKLSIDKVLKKQNRAQEFDAFTHFSVHKSQITMGIERAIATGNWSLKRFK- 562

Query: 427  LQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHT 484
               M  +G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +C   T
Sbjct: 563  ---MDRAGVTHV---LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDT 616

Query: 485  PDGTPCGLLNHLTTNCQIS-----------------EYIPSKVLAQIPSVLVSLGMLPLT 527
            P+G  CGL+ +L     I+                 E I S+   +I S  +    L  T
Sbjct: 617  PEGEACGLVKNLALMTHITTEDDEEPVRKIIFLLGAEDICSQTGEEIHSEGIYSVCLNGT 676

Query: 528  PV-IQSIPEQALMVMLDGRIVGYILD-------------QIATSLVPKLRMLKIVGEKIP 573
            P+ +   P++ L      R +G I +              +AT      R + IV E   
Sbjct: 677  PIAVTDTPKRFLNSFRKLRRMGRISEFTSIHINHDFCEVHVATDEGRICRPM-IVVENQH 735

Query: 574  KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMK 633
              +   YLK   KG   +                  L  G +E++ T E+   +I +  +
Sbjct: 736  SKVTSRYLKALRKGTMEFEDF---------------LTRGLVEYLDTNEENDTNIALK-E 779

Query: 634  EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
            E     TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +   
Sbjct: 780  EDINQHTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDT 839

Query: 694  KLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
             LY +  P  P  +    +    D  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF 
Sbjct: 840  LLYLMVYPQQPMVKTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFG 899

Query: 754  HGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
               + K     L++  N  GT                              SD+      
Sbjct: 900  RCQVLKKHVTPLKTYAN--GT------------------------------SDRINAGAL 927

Query: 814  FGRDPANKALEDKLGPDGLVYVGAKLNERD-------------PMYSYWKESENRYVTCR 860
               +P+++A    +G DG+  VGA++   D             P  + +K+   +Y    
Sbjct: 928  NSENPSHQA----IGLDGIAQVGARIEAGDAFLLKSIPQDTAGPASNIYKDKPEKYKMPD 983

Query: 861  YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
             S  ++ C+         TE  + T     +  R  R P +GDKF+SR GQKG   +   
Sbjct: 984  CSYVDKACI---------TENEAGTTLIKLL-MRQTRRPELGDKFSSRHGQKGTTGLIVQ 1033

Query: 921  AEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 1034 QEDMPFNDQGINPDIIMNPHGFPSRMTVG 1062



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +E+G++Y G + + SG+ G   Q   FFG ++YQ+L+HMV DK  ++    R    +   
Sbjct: 1098 VENGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPT 1157

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    DG + +G    ERD + +Y              G  ++ +E + +SS       V
Sbjct: 1158 EGRARDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMISSD-AHDVDV 1200

Query: 885  TPNCAYIGY 893
               C  +GY
Sbjct: 1201 CEKCGQMGY 1209


>gi|124804526|ref|XP_001348029.1| DNA-directed RNA polymerase 1, subunit 2, putative [Plasmodium
            falciparum 3D7]
 gi|23496284|gb|AAN35942.1| DNA-directed RNA polymerase 1, subunit 2, putative [Plasmodium
            falciparum 3D7]
          Length = 1517

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 138/328 (42%), Positives = 182/328 (55%), Gaps = 37/328 (11%)

Query: 627  DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
            +I I M E  P    + EL +T FLS LA+L P  D NQSPRN+YQCQM KQTMG   LN
Sbjct: 917  NINIDMYEQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLN 976

Query: 687  WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
              Y    K+YR+ TP  P      Y+   +DNFP GTNA+VA+++YTGYDMEDA+I+NK+
Sbjct: 977  NVYTFTNKIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKA 1036

Query: 747  SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
            S +RG     I+K+ FI+L+              V  S   +   FG      +R++ ++
Sbjct: 1037 SADRGIFRTHIYKTEFIDLQK-------------VGES---SNFVFG----NNIRYLNNN 1076

Query: 807  KWQTKDYFGRDPANKALEDK---LGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
            K   K+         A E+K   L  DGL  V  K+ E  P+YSY  +         +  
Sbjct: 1077 KNNNKNL--------AYENKGKFLNKDGLPCVQQKITEGSPLYSYINKGNELTTYESFRN 1128

Query: 864  KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
              E  V+ V +      G + +   A +  R  R P VGDKFASR GQKG+ S  +P ED
Sbjct: 1129 HGEYFVDFVSI------GKNNSNQVAVVKLRSTRQPQVGDKFASRHGQKGVVSRLFPQED 1182

Query: 924  LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            +PF +SG+VPDI+FNPHG PSRMTIG L
Sbjct: 1183 MPFAESGIVPDIIFNPHGIPSRMTIGML 1210



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 140/257 (54%), Gaps = 14/257 (5%)

Query: 404 SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEM 463
           S+  SA+  F  TGN+S+     L   Q SG+VI A+ IN +R +++FRA+HRG++FQ++
Sbjct: 546 SNTSSAILFFFKTGNISS---ENLHYQQKSGWVIAADEINNLRLITNFRAIHRGTFFQDV 602

Query: 464 RSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA-QIPSVLVSLG 522
           +   PR+L  ++WGFICPVHTPDGTPCGLLNHL   C I     ++     I   L  +G
Sbjct: 603 KVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLYLKKIG 662

Query: 523 M---LPLTPVIQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKS-LE 577
           +   L  T  I +I  ++ + +++D   + YI ++     V KL+  K       KS  E
Sbjct: 663 INVNLDDTSGIHTIYDDENIPIIVDSIPITYIGEKDFNRTVYKLKYAKNNNLFNLKSYFE 722

Query: 578 I-VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY 636
           I  YL  P     +   + + T PGR++RP++NL   +IE+I    Q ++ + I  ++  
Sbjct: 723 INAYLNEPL----IMNSIIINTFPGRLIRPLLNLKTKDIEFISPSYQPYISVAINNEDVK 778

Query: 637 PGITTHRELSKTDFLSN 653
                 + L K + + N
Sbjct: 779 KNNLARKLLKKKEQVVN 795



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 152/376 (40%), Gaps = 66/376 (17%)

Query: 62  NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKL--------NIVKAAIS 113
           N F   L   HI  F+  ++  +    E+I  +EF        L          VK  +S
Sbjct: 65  NIFTKFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSESVKFFVS 124

Query: 114 EPKVPAGPVGIHFNKY---YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPI 170
           + ++    +     +Y   YP   + +   Y G   + +   +  +   T T   G +PI
Sbjct: 125 DIQIKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQYKDEIAST-TICAGHIPI 183

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
           M+ S  C+L NL   +L ++GE     GG+F+V G  K++R +I     HP   K N   
Sbjct: 184 MIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVIRYVI-----HP---KYNTL- 234

Query: 231 NRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC------LLGMMQSL 284
              LL +D  ++I  +  D +   N L    N S  + F  + ++C      LL ++  +
Sbjct: 235 ---LLNADNKIHINCLLNDNTVVINFLTLTRNNSYVYGFRFQNAVCSLPFHLLLMILSPI 291

Query: 285 HEE---------GIHTQHDSK--------VFFGQIFKEK---LQYDLRHLNEVE-----I 319
            ++         G+  ++  K        +F    F EK    +Y+L +L  +      I
Sbjct: 292 KKKSYIFNKIKLGVENENAIKYIELFINSIFLKDTFNEKELFEKYNLSYLGRIAYLRRGI 351

Query: 320 CDY-----------MLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQ 368
             Y           +L  CILPH+ +  +KF  +  M  KL +    ++   ++DS+   
Sbjct: 352 FKYNLNCYEKKAKDILKYCILPHIKNNSEKFETMCFMFKKLIYSNFKLITPINKDSLENH 411

Query: 369 EIMTGGSLYLQLLKKE 384
            + T  +L   LLK +
Sbjct: 412 AVTTCSNLLANLLKDQ 427



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 35/47 (74%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L  GY+YYGTE +YSG+ G  +QA IF GV++YQRLRHM  DK Q +
Sbjct: 1336 LNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVR 1382


>gi|71754481|ref|XP_828155.1| RNA polymerase I second largest subunit [Trypanosoma brucei TREU927]
 gi|70833541|gb|EAN79043.1| RNA polymerase I second largest subunit [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
          Length = 1596

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 177/591 (29%), Positives = 285/591 (48%), Gaps = 72/591 (12%)

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
            +   L TGN +  +       Q +G+ +M E++N  R       VHRG    EMRSS+ R
Sbjct: 813  LNRLLLTGNFALDREEDFYSPQTAGWAVMTEHLNFYRSFEQLMCVHRGKSIAEMRSSDVR 872

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLV----SLGMLP 525
            +   +A+GFIC VH+PDG  CG+LNHL+ +  +S   P    +Q   +L      L  + 
Sbjct: 873  RYPCEAYGFICMVHSPDGEDCGVLNHLSISTVLSAS-PRVGSSQYKILLAFIEEELKNVR 931

Query: 526  LTPVIQSIPEQ---ALMVMLDGRIVGYILDQIATS----LVPK--LRMLKIVG------- 569
             T  + S  +Q    + V L+GR++GY+    A S    L  K  LR   +VG       
Sbjct: 932  NTTSLISCVDQLVGTVPVWLEGRLLGYLSPNEALSASKALTQKKALRSRGVVGVTGIVRR 991

Query: 570  EKIPK--SLEIVYLKRPEKGMGLYP-GLYLFTGPGRMLRPVMNLAAGN--------IEWI 618
            + I    ++E+VY+    K     P GLY+F   GR++RPV+ + + +        + ++
Sbjct: 992  DSISSLNTMEVVYIPPGSKD----PMGLYIFYQYGRLMRPVLQIESPSRGGDLPFPVVYL 1047

Query: 619  GTFEQVFMDICITMKEAYPGITTHR------ELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
            GT+EQ + DI     + + G    R      E +  + LS  ++ IP  + N SPRN++Q
Sbjct: 1048 GTWEQSWRDIAAVPSDLFDGFDQLRRKYEFMEQNGFNILSFTSSTIPFFEHNCSPRNLFQ 1107

Query: 673  CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
            C + KQT GT      ++   KL+R+  P     R +  D   +D+  +G NA+VA+++Y
Sbjct: 1108 CGLSKQTAGTQLQTQAWRRDAKLFRMYYPQRYISRTLPMDYFGLDDVSLGVNAVVAILAY 1167

Query: 733  TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV-DGSMMQAQIF 791
            TGYD++DAMILN ++ + G  +  +  +  ++     +       ++ + DG     ++ 
Sbjct: 1168 TGYDLDDAMILNSTAKQFGMLNAGVTVAKIVKASGKGDSNDVFVFHNCLPDGQPFTPELD 1227

Query: 792  FGVVHYQRLRHMVSDKWQTKD---YFGRDPANK--ALEDKLGPDGLVYVGAKLNER-DPM 845
                     RH +  K    +   YF  D  +K  +L D       VY  AK  E  DP+
Sbjct: 1228 ---------RHGLPKKRAVPNATAYFSFDTDHKYPSLRDS----SAVYCCAKRFEYIDPL 1274

Query: 846  YSYWKESENRYVTCRY----SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
             +       R+   ++     G++     V+ ++    +     P    + +RI R P +
Sbjct: 1275 TNEKTYEYTRHQITKWRHFDKGEDAWVHSVIPLTYDGPD-----PTSVLVLFRIPRPPVI 1329

Query: 902  GDKFASRAGQKGICSVKWPAEDLPF-TDSGLVPDIVFNPHGFPSRMTIGFL 951
            GDKF+SR GQKG   +   + DLPF T  G+ PDI+ NPH FPSRMT+G +
Sbjct: 1330 GDKFSSRHGQKGTLPLDIRSHDLPFSTRDGITPDIIINPHAFPSRMTVGMV 1380



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GYN YG E +  G+ G  ++A++  G+  YQRLRHMVSDKWQ +
Sbjct: 1422 GYNRYGREKLIDGITGEEIEAEVLVGISGYQRLRHMVSDKWQAR 1465



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERG-EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
           +G +P M+   RC LR +       R  E   E GGYF++ G E+++R LI  R N P+ 
Sbjct: 452 LGELPEMVLGARCALRGVNQRLDHFRALEEQKEVGGYFVLRGGERILRNLILQRCNVPLN 511

Query: 224 IKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
           I+R  +      FS   V IR  +       N  ++ T G   F F+ R
Sbjct: 512 IERERFATVDSFFSPRAVIIRCKRPSGLTVQNYFYYATKGEVIFTFARR 560


>gi|451845872|gb|EMD59183.1| hypothetical protein COCSADRAFT_175739 [Cochliobolus sativus ND90Pr]
          Length = 1215

 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 245/930 (26%), Positives = 372/930 (40%), Gaps = 192/930 (20%)

Query: 125  HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
            H +   P E R     Y+ P  V + ++           ++GR+PIMLKS +C L     
Sbjct: 178  HHSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLAGKND 237

Query: 185  AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
             ++    E P + GGYFI  G EK++  L+  + N          KNR ++ S  G+   
Sbjct: 238  REMAVMEECPLDPGGYFITRGQEKVI--LVQEQLN----------KNRVIVESAKGIMQA 285

Query: 245  SVKRDESATNNVLHFVTNGSARFMFSHRKS--------MCLLGM---------------- 280
            SV           + +      ++  +  S        M  LG+                
Sbjct: 286  SVTSSTHERRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVHSDKEILLMIAGEDSA 345

Query: 281  --------MQSLHEEGIHTQHDSKVFFG---QIFKEKLQYDLR---HLNEVEICDYMLTN 326
                     ++   E IHTQ  +  + G   ++ K+ L        HL  +E     L+N
Sbjct: 346  YQDNFAINFEACAREQIHTQERALEYIGHRVRLVKKPLGTSRNRNYHLEAIEC----LSN 401

Query: 327  CILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
             +LPH+     +Y  K L ++ M  ++   +Q    +D  D +  + +   G +   L +
Sbjct: 402  VVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLELSGQMLSLLFE 461

Query: 383  KE--------KSGTSAVLK------ESDIYAAF--RASSIESAMTNFLATGNVSAGKNST 426
                      K     VLK      E D ++ F    + I   +   +ATGN S  +   
Sbjct: 462  DHFKRFNHDFKLSIDKVLKKQVRAQEFDAFSHFSVHKNHITMGVERAIATGNWSLKRFK- 520

Query: 427  LQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHT 484
               M+ +G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +C   T
Sbjct: 521  ---MERAGVTHV---LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDT 574

Query: 485  PDGTPCGLLNHLTTNCQIS-----------------EYIPSKVLAQIPSVLVSLGMLPLT 527
            P+G  CGL+ +L     I+                 E I S+   +I +  V    L  T
Sbjct: 575  PEGEACGLVKNLALMTHITTEDDDDPVRKIVFMLGAEDICSQTGEEIHAEGVYSVCLNGT 634

Query: 528  PV-IQSIPEQALMVMLDGRIVGYILD-------------QIATSLVPKLRMLKIVGEKIP 573
            P+ +   P++ L      R +G I +              +AT      R + IV  +  
Sbjct: 635  PIAVTDTPKRFLNSFRKLRRMGRISEFTSIHIDHDHCEVHVATDEGRICRPMIIVENQHS 694

Query: 574  KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMK 633
            K +   YLK   KG   +                  L  G +E++ T E+   D  I +K
Sbjct: 695  K-VTSRYLKALRKGTMEFEDF---------------LTRGLVEYLDTNEE--NDTNIALK 736

Query: 634  EAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
            E+     TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +  
Sbjct: 737  ESEINQHTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRID 796

Query: 693  GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
              LY +  P  P  +    +    D  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF
Sbjct: 797  TLLYLMVYPQQPMVKTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGF 856

Query: 753  AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
                +FK     L++    Y   T            +I  G +      H          
Sbjct: 857  GRCQVFKKHVTPLKT----YANNT----------SDRINAGALDVANSNHQA-------- 894

Query: 813  YFGRDPANKALEDKLGPDGLVYVGAKLNERD-------------PMYSYWKESENRYVTC 859
                          +G DG+  VGA+L   D             P  + +K+   RY   
Sbjct: 895  --------------IGQDGIAQVGARLEAGDAFLLKSIPQDTAGPASNLYKDKPERYKLP 940

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
              S  ++ C+         TE  S T     +  R  R P +GDKF+SR GQKG   +  
Sbjct: 941  DCSYIDKACI---------TENESGTTLIKLL-MRQTRRPELGDKFSSRHGQKGTTGLIV 990

Query: 920  PAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
              ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 991  QQEDMPFNDQGICPDIIMNPHGFPSRMTVG 1020



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 18/155 (11%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN +  Y   F    +     I +E G++Y G + + SG+ G   Q   FFG ++YQ
Sbjct: 1030 AGVLNGTLEYGTAFGGSTVEDMSQILVEKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQ 1089

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
            +L+HMV DK  ++    R    +   +    DG + +G    ERD + +Y          
Sbjct: 1090 KLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEM--ERDCLIAY---------- 1137

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                G  ++ +E + +SS       V   C  +GY
Sbjct: 1138 ----GASQLLLERLMISSD-AHNVDVCEKCGQMGY 1167


>gi|46107920|ref|XP_381019.1| hypothetical protein FG00843.1 [Gibberella zeae PH-1]
          Length = 1157

 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 247/975 (25%), Positives = 392/975 (40%), Gaps = 155/975 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++F ++  +   V     I  E+      L      + +P+           +  P
Sbjct: 48  HIDSYNFFVEHEIKDIVRANRTIRSEV-DSNFWLEFTDIRVDKPRRQDWQDAKSHTEVTP 106

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     Y+ P +V + +  D +        +GR+P+MLKS  C L      ++ E  
Sbjct: 107 MECRLRDMTYAAPISVDIQYIRDKQRIVRKNVPLGRMPVMLKSSICRLGGANNTKMEEMN 166

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDES 251
           E P + GGYFI+GG EK+            I I+    KNR ++ +D    I S     S
Sbjct: 167 ECPLDPGGYFIIGGTEKV------------ILIQEQLSKNRIIVEADEKNNIISASVTSS 214

Query: 252 A-TNNVLHFVTNGSARFMFSHR------------KSMCLLGMMQSLH------------- 285
                   +VT    R + +H             K++  L  M+ +              
Sbjct: 215 THERKSKTYVTLKKDRILLTHNVLVEGIPIVIILKALGGLSDMEIMQLVAGSDGRYQDEF 274

Query: 286 --------EEGIHTQHDSKVFFGQIFKEKLQYDL----RHLNEVEICDYMLTNCILPHLD 333
                   + G+ TQH +  + G   K   +  +       N VE     L N ++ H+ 
Sbjct: 275 LVNFDEATKVGVFTQHQALEYIGTRVKMAPRRGIFGPQVRRNHVEEGLDALANLVIAHVP 334

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--KSG 387
               D++ K + ++ MT ++         +D  D +  + +   G L L LL ++  K  
Sbjct: 335 IEGLDFYPKAIYVAMMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQL-LSLLFEDLFKQF 393

Query: 388 TSAVLKESDIYAAFRASSIESAMTNFLA--TGNVSAGKNSTLQL---------MQASGFV 436
           T+ V    D +      ++     N ++    N+  G N  +Q          M  +G  
Sbjct: 394 TTNVRMSIDKFLKKNNRAVPLDAVNMISNHANNIGYGINRAIQTGNWNVKRFNMNRAG-- 451

Query: 437 IMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
            +   ++R+ Y++    + R  S F++ R  S PR L+   WG +C   TP+G  CGL+ 
Sbjct: 452 -VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVK 510

Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILD 552
           +L     I+  +  + + +    L   G+ P+      +   E + ++ ++G    + L 
Sbjct: 511 NLALMTHITTNVDEEPVKRWIFTL-DAGVEPIRNFSGAEMHREGSYIIHVNG--TPFALT 567

Query: 553 QIATSLVPKLRMLK-------IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM-- 603
           +       K R ++        VG  I      V++   E G    P + +  G  ++  
Sbjct: 568 RYPKRFAQKFRTMRRRGWISPFVGININTHFNAVHIATDE-GRICRPYIIVKNGKQKLKP 626

Query: 604 --LRPVMN--------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDFLS 652
             LR +          L  G +E++   E+   D  IT+ E      TTH E+     L 
Sbjct: 627 EHLRLLQMGKATFDDFLNRGIVEYLDVNEE--NDALITIYEHQVTQSTTHLEIEPFTVLG 684

Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
            +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P        
Sbjct: 685 AVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVISKTIQ 744

Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
            +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL+   N  
Sbjct: 745 LIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYTTELQKYPNGR 804

Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
                                       R  + D     +  G+        + L  DGL
Sbjct: 805 ----------------------------RERIGDPEMEGE--GKSKRRITKHEALDDDGL 834

Query: 833 VYVGAKLNERDPMYSYWKES----------------ENRYVTCRYSGKEEMCVEVVRMSS 876
             VG K++  + M    KE+                E R  +  Y   +   ++ V +S 
Sbjct: 835 AIVGYKVHSGEAMVK--KETPLDQTSTGIGLDRGPGEFRDSSVSYRIADPAYIDKVMISQ 892

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
             TE  +       +  R  R P +GDKF+SR GQKG+  +    EDLPF+DSGL PDI+
Sbjct: 893 --TEKDTT---VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDSGLSPDII 947

Query: 937 FNPHGFPSRMTIGFL 951
            NPHGFPSRMT+G L
Sbjct: 948 MNPHGFPSRMTVGKL 962



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 23/149 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            +  G  F+S  +E      ++ G+++ G +   SG+ G  ++A +F G ++YQRL+HMV 
Sbjct: 979  YGFGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLKHMVQ 1038

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1039 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GAS 1082

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            ++ +E + +SS  TE   +   C   GY+
Sbjct: 1083 QLLLERLMISSDGTE-IDICQQCGLFGYK 1110


>gi|302927105|ref|XP_003054428.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735369|gb|EEU48715.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1156

 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 248/988 (25%), Positives = 405/988 (40%), Gaps = 182/988 (18%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S++F +++ +   V     I  ++      L      +  P+              P
Sbjct: 48  HIDSYNFFVEQEIKDIVRANRTIRSDV-DSNFWLEFTDIRVDRPRRQDWQDAKSHTDVTP 106

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            E R     Y+ P  V + +  D +        +GR+P+MLKS +C L   T  Q+ E  
Sbjct: 107 MECRLRDMTYAAPILVDIQYIRDKQRIVRKNVPLGRMPVMLKSSKCRLGGATNTQMEEMN 166

Query: 192 EHPDEWGGYFIVGGHEKLV---------RLLIN-NRRNHPIAIKRNAW------------ 229
           E P + GGYFI+GG EK++         R+++  + +N+ I+    +             
Sbjct: 167 ECPLDPGGYFIIGGTEKVILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTL 226

Query: 230 -KNRGLLFSDL---GVYIRSVKRDESATNN--VLHFVTNGSARFMFSHRKSMCLLGMMQS 283
            K+R LL  ++   G+ I  V +     ++  ++  V     R+          L     
Sbjct: 227 KKDRILLTHNVLVEGIPIVIVLKALGGKSDMEIMELVAGSDGRYQDE------FLVNFDE 280

Query: 284 LHEEGIHTQHDSKVFFGQIFK---EKLQYDLR-HLNEVEICDYMLTNCILPHLD----DY 335
             + GI TQH +  + G   K    + Q+  +   N VE     L N ++ H+     D+
Sbjct: 281 ATKAGIFTQHQALEYIGARVKMGSRRGQFGPQVRRNHVEEGLDALANLVIAHVPIEELDF 340

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------- 384
           + K + ++ MT K+         +D  D +  + +   G L L LL ++           
Sbjct: 341 YPKAIYVAMMTRKVLMAAHNPKLVDDRDFVGNKRLELAGQL-LSLLFEDLFKRFTVEVKM 399

Query: 385 ------KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
                 K    AV  ++    +  A++I   +   + TGN S  + +    M  +G   +
Sbjct: 400 SIDKFLKKNNRAVPLDAVHMISNHANTIGIGINRAIQTGNWSVKRFN----MNRAG---V 452

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
              ++R+ Y++    + R  S F++ R  S PR L+   WG +C   TP+G  CGL+ +L
Sbjct: 453 THVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNL 512

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE-QALMVMLDGRIVGYI----- 550
                I+  +    + +         +L +   +++I +    M+  +G  V ++     
Sbjct: 513 ALMTHITTNVEEGPVKET--------ILTIDKEVEAIEKFSGSMMHREGSYVIHVNGTPF 564

Query: 551 -LDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL---YPGLYLFTGPGRMLRP 606
            L +       + R L+  G              P  G+ +   +  +++ T  GR+ RP
Sbjct: 565 ALTRNPKRFAQRFRTLRRRGGI-----------SPFVGININTHFNAIHIATDEGRICRP 613

Query: 607 ---VMN-----------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGI 639
              V N                       L  G +E++   E+   D  IT+ E      
Sbjct: 614 YIIVKNGQQKLKPEHLRLLQLGKVTFDDFLRQGVVEYLDVNEE--NDALITIYEDQVTQS 671

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
           TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L 
Sbjct: 672 TTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLV 731

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
            P  P         +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+
Sbjct: 732 YPQRPMVISKTIQLIGYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFR 791

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
               EL+   N                           +R+    +++ + K    R   
Sbjct: 792 KYTTELQKYPNG------------------------RRERIGDPQNEEGKVKQ---RIKK 824

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKE----------------SENRYVTCRYSG 863
           ++ L+D    DGL  VG +++  + M    KE                SE R  +  Y  
Sbjct: 825 HEGLDD----DGLAIVGYRIHNGEAMIK--KETPLDQTTTGIGMDRGPSEYRDSSVSYRI 878

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
            +   ++ V +S   TE  +       +  R  R P +GDKF+SR GQKG+  +    ED
Sbjct: 879 ADPAYIDKVMVSQ--TEKDTT---VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQED 933

Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           LPF+D GL PDI+ NPHGFPSRMT+G L
Sbjct: 934 LPFSDKGLTPDIIMNPHGFPSRMTVGKL 961



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 23/149 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            +  G  F+S  +E      ++ G+++ G +   SGV G  ++A IF G ++YQRL+HMV 
Sbjct: 978  YGFGDAFRSHPLEEMSKVLVDHGFSWEGKDYFTSGVTGEPLEAYIFNGPIYYQRLKHMVQ 1037

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    +    +   +    +G + +G    ERD + +Y              G  
Sbjct: 1038 DKMHSRSRGPKAILTRQPTEGRSREGGLRLGEM--ERDCLIAY--------------GAS 1081

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            ++ +E + +SS  TE   +   C   GY+
Sbjct: 1082 QLLLERLMISSDGTE-IDICQQCGLFGYK 1109


>gi|451995160|gb|EMD87629.1| hypothetical protein COCHEDRAFT_1206799 [Cochliobolus heterostrophus
            C5]
          Length = 1215

 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 245/930 (26%), Positives = 375/930 (40%), Gaps = 192/930 (20%)

Query: 125  HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
            H +   P E R     Y+ P  V + ++           ++GR+PIMLKS +C L     
Sbjct: 178  HRSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLAGKND 237

Query: 185  AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
             ++    E P + GGYFI  G EK++  L+  + N          KNR ++ S  G+   
Sbjct: 238  REMAVMEECPLDPGGYFITRGQEKVI--LVQEQLN----------KNRVIVESAKGIMQA 285

Query: 245  SVKRDESATNNVLHFVTNGSARFMFSHRKS--------MCLLGM---------------- 280
            SV           + +      ++  +  S        M  LG+                
Sbjct: 286  SVTSSTHERRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVHSDKEILLMIAGEDSA 345

Query: 281  --------MQSLHEEGIHTQHDSKVFFG---QIFKEKLQYDLR---HLNEVEICDYMLTN 326
                     ++   E IHTQ  +  + G   ++ K+ L        HL  +E     L+N
Sbjct: 346  YQDNFAINFEACAREQIHTQERALEYIGHRVRLVKKPLGTSRNRNYHLEAIEC----LSN 401

Query: 327  CILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
             +LPH+     +Y  K L ++ M  ++   +Q    +D  D +  + +   G +   L +
Sbjct: 402  VVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNKRLELSGQMLSLLFE 461

Query: 383  KE--------KSGTSAVLK------ESDIYAAF--RASSIESAMTNFLATGNVSAGKNST 426
                      K     VLK      E D ++ F    + I   +   +ATGN S  +   
Sbjct: 462  DHFKRFNHDFKLSIDKVLKKQVRAQEFDAFSHFSVHKNHITMGVERAIATGNWSLKRFK- 520

Query: 427  LQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHT 484
               M+ +G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +C   T
Sbjct: 521  ---MERAGVTHV---LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDT 574

Query: 485  PDGTPCGLLNHLTTNCQIS-----------------EYIPSKVLAQIPSVLVSLGMLPLT 527
            P+G  CGL+ +L     I+                 E I S+   +I +  V    L  T
Sbjct: 575  PEGEACGLVKNLALMTHITTEDDDDPVRKIVFMLGAEDICSQTGEEIHAEGVYSVCLNGT 634

Query: 528  PV-IQSIPEQALMVMLDGRIVGYILD-------------QIATSLVPKLRMLKIVGEKIP 573
            P+ +   P++ L      R +G I +              IAT      R + IV  +  
Sbjct: 635  PIAVTDTPKRFLNSFRKLRRMGRISEFTSIHIDHDHCEVHIATDEGRICRPMIIVENQHS 694

Query: 574  KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMK 633
            K +   YLK   +G   +                  L  G +E++ T E+   D  I ++
Sbjct: 695  K-VTSRYLKALRRGTMEFEDF---------------LTRGLVEYLDTNEE--NDTNIALR 736

Query: 634  EA-YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
            E+     TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +  
Sbjct: 737  ESDINEHTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRID 796

Query: 693  GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
              LY +  P  P  +    +    D  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF
Sbjct: 797  TLLYLMVYPQQPMVKTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGF 856

Query: 753  AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
                +FK     L++    Y   T                            SD+     
Sbjct: 857  GRCQVFKKHVTPLKT----YANNT----------------------------SDRINAGA 884

Query: 813  YFGRDPANKALEDKLGPDGLVYVGAKLNERD-------------PMYSYWKESENRYVTC 859
                +P ++A    +G DG+  VGA+L   D             P  + +K+   RY   
Sbjct: 885  LDVANPNHQA----IGQDGIAQVGARLEAGDAFLLKSIPQDTAGPASNLYKDKPERYKLP 940

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
              S  ++ C+         TE  S T     +  R  R P +GDKF+SR GQKG   +  
Sbjct: 941  DCSYIDKACI---------TENESGTTLIKLL-MRQTRRPELGDKFSSRHGQKGTTGLIV 990

Query: 920  PAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
              ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 991  QQEDMPFNDQGICPDIIMNPHGFPSRMTVG 1020



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 18/155 (11%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN +  Y   F    +     I +E G++Y G + + SG+ G   Q   FFG ++YQ
Sbjct: 1030 AGVLNGTLEYGTAFGGSTVEDMSQILVEKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQ 1089

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
            +L+HMV DK  ++    R    +   +    DG + +G    ERD + +Y          
Sbjct: 1090 KLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEM--ERDCLIAY---------- 1137

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                G  ++ +E + +SS       V   C  +GY
Sbjct: 1138 ----GASQLLLERLMISSD-AHNVDVCEKCGQMGY 1167


>gi|212537851|ref|XP_002149081.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
 gi|210068823|gb|EEA22914.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
          Length = 1212

 Score =  226 bits (576), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 242/907 (26%), Positives = 393/907 (43%), Gaps = 143/907 (15%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +             +GR+PIML+S +C L N  P ++   
Sbjct: 168  PNECRLRDMTYAAPIFVDFTYKRGKDKVTQRRVPIGRMPIMLRSSKCVLSNKKPNEMHLL 227

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD-------LGVYI 243
             E P + GGYFIV G EK+            I ++    KNR ++ +D         V  
Sbjct: 228  NECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRIIVETDPKKEIVQASVTS 275

Query: 244  RSVKRDESA-----------TNNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE- 287
             S +R   +            +NVL      V    A  + S ++ M L+  +  +++E 
Sbjct: 276  SSNERKSKSYIILKKDRLYLKHNVLSEDVPLVIVLKAMGVHSDKEMMLLVAGVDDVYQED 335

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQ-YDLRHLNEVEICDYMLTNCILPHL 332
                        + TQ  +  + G   +I + K+  Y   H+ E       +++ I+ H+
Sbjct: 336  FAINFEEAIKQNVFTQQQALDWIGSKIKINRGKIGGYKKTHIEE---AIEAISSVIISHV 392

Query: 333  D----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK- 383
            +    D+  K + +++M  ++         +D  D +  + +   G L    +  L KK 
Sbjct: 393  EVTDMDFRPKAIYVANMARRVLMAKHDSDMVDDRDYVGNKRLELAGQLLALLFEDLFKKF 452

Query: 384  ---EKSGTSAVL--KESDIYAA-----FRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
                K   + VL  +  +I+ A        + I   M   ++TGN S  +      M+ +
Sbjct: 453  QFDIKMNITKVLGKRRREIFDAMSVVTLHGNHITHGMNRAISTGNWSLKRFR----MERA 508

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 509  G---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 565

Query: 492  L------LNHLTTNCQ---ISEYI-----------PSKVLAQIPSVLVSLGMLPLTPVIQ 531
            L      + H+TTN +   +S+ +             K +  + + ++S+   P+   + 
Sbjct: 566  LVKNLALMTHITTNDEEGPVSKLVFMLGAEDITTLSGKEIYGLGAYIISMNGTPIA--LT 623

Query: 532  SIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE--KIPKSLEIVYLKRPEKGMG 589
              P+  L      R +G I + ++  +    R + I  +  +I + L +V     E G  
Sbjct: 624  RRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVHIATDDGRICRPLIVV-----ENGKP 678

Query: 590  LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTD 649
            L    +L       ++    LA G +E++   E+   +I I  K+    ITTH E+    
Sbjct: 679  LVKASHLEKLRDGSMQFDDFLAQGLVEYLDVNEENDSNIAIYEKDVI-DITTHLEIEPFT 737

Query: 650  FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
             L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +  
Sbjct: 738  ILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVKTR 797

Query: 710  HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
              + +  D  P G NA VAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S  
Sbjct: 798  TIELIKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANLKSYP 857

Query: 770  NYYGTETMYSG----VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD-PANKALE 824
            N  G+E    G     +G+ +             +  +VS   Q + Y  ++ PA     
Sbjct: 858  N--GSEDRLRGPELDEEGAPITKHALLDTDGLAAVGAVVS---QGQVYINKEVPAAAFSA 912

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
               G D    VG +  + +P    +K  +  Y+       +++ V V       TEG S 
Sbjct: 913  GITGSD----VG-RPPDYNPAPMTYKLPDPSYI-------DKVMVSV-------TEGES- 952

Query: 885  TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                  +  R  R P VGDKF+SR GQKG+  +     D+PF D G+VPDI+ NPHGFPS
Sbjct: 953  --KIYKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFNDQGIVPDIIMNPHGFPS 1010

Query: 945  RMTIGFL 951
            RMT+G L
Sbjct: 1011 RMTVGKL 1017



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 17/147 (11%)

Query: 748  YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            Y   F    + +   I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK
Sbjct: 1034 YGTAFGGSPVEQMSAILVDKGFSYGGKDYLTSGITGEPLPFYVFMGPIYYQKLKHMVQDK 1093

Query: 808  WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEM 867
              ++    R    +   +    DG + +G    ERD + +Y              G  ++
Sbjct: 1094 MHSRSTGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQL 1137

Query: 868  CVEVVRMSSGFTEGGSVTPNCAYIGYR 894
             +E + +SS   E   +   C ++GY+
Sbjct: 1138 LLERLMLSSDKHE-VDICEKCGFMGYQ 1163


>gi|221056432|ref|XP_002259354.1| dna-directed rna polymerase, beta subunit [Plasmodium knowlesi strain
            H]
 gi|193809425|emb|CAQ40127.1| dna-directed rna polymerase, beta subunit,putative [Plasmodium
            knowlesi strain H]
          Length = 1539

 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 136/339 (40%), Positives = 182/339 (53%), Gaps = 30/339 (8%)

Query: 617  WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
            +  + E V +DI   M E +     + EL +T FLS L +L P  D NQSPRN+YQCQM 
Sbjct: 940  YTDSDENVNLDIYEQMPEKF----EYMELKETSFLSFLGSLTPFSDHNQSPRNIYQCQML 995

Query: 677  KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
            KQTMG   LN  Y    K+YR+ TP  P      Y+   +DNFP GTNA+VA+++YTGYD
Sbjct: 996  KQTMGIQSLNMMYTFTNKIYRMITPQYPLVVTRDYELYGVDNFPSGTNAVVAILAYTGYD 1055

Query: 737  MEDAMILNKSSYERGFAHGCIFKSMFIELESGYN----YYGTETMYSGVDGSMMQAQIFF 792
            MEDA+I+NKSS ERG     I+K++ I+L+  +       G    Y+  +          
Sbjct: 1056 MEDALIINKSSAERGIFRTHIYKTIIIDLKKNHGAGDFALGNNVRYTNKNAGTNATSANS 1115

Query: 793  GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES 852
                   L      K+Q  ++ G+          L  DGL  V  K+ E +P+YSY  ++
Sbjct: 1116 TSTAKNNL------KFQY-EHMGK---------FLNKDGLPRVQQKMVELNPLYSYVNKA 1159

Query: 853  ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
                V  ++    E  V+ V      T   S       I  R  R P VGDKFASR GQK
Sbjct: 1160 SELTVYEKFKEHGEYYVDCV------TNYKSTKNQIGIIRLRTTRPPLVGDKFASRHGQK 1213

Query: 913  GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            G+ S  +P ED+PF++SG+VPD++FNPHG PSRMTIG L
Sbjct: 1214 GVVSRLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGML 1252



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 14/226 (6%)

Query: 413 FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLR 472
           F  TGN+S+     +   Q SG+VI A+ IN +R++++FRA+HRG +FQE++   PR+L 
Sbjct: 573 FFKTGNISS---ENIGYQQRSGWVIGADEINSLRFITNFRAIHRGCFFQEVKVLSPRKLL 629

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTT-----NCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
            +AWGFICPVHTPDG+PCGLLNHL+      N   +E     +   +  + V++ +   +
Sbjct: 630 GEAWGFICPVHTPDGSPCGLLNHLSQFSYVHNSASNESHKLNIKLYLKKIGVNVNLDDTS 689

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEI-VYLKRPE 585
            +     +Q + +++D   + YI +Q    +V KL+  K      +    EI  YL  P 
Sbjct: 690 GIPTIYEDQTIPILVDSVPITYISEQDFNRVVYKLKYAKNHNLYNLKAYFEINAYLNEPL 749

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
               L   + + T PGR++RP+ NL    IE+I    Q ++ I I 
Sbjct: 750 ----LMDSIIINTFPGRLIRPLFNLKMKCIEYISPAYQPYVAIAIN 791



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L  GY+YYGTE +YSG+ G  +QA IFFGV++YQRLRHM  DK Q +
Sbjct: 1358 LNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVR 1404



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 51/295 (17%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
           YP   + +   Y G   + +    + +   T T   G +P+M+ S  C+L +L+   L +
Sbjct: 159 YPYLCKLSARTYEGEITLKINRKTNDEIIST-TVSAGTIPVMVLSNLCNLSSLSKKMLPQ 217

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
           +GE     GG+F++ GH K++R +I+ + N  I +      +   L +D  VY+  +   
Sbjct: 218 KGEDESLLGGFFVISGHLKVIRYVIHPKYN-TILLNDENKVHMNCLLNDNSVYVNFLSCP 276

Query: 250 ESATNNVLHFVTNGSARFMFS----------------HRKSMCLLGMMQSLHEEGIHT-- 291
           +        F T G AR+  S                 +KS     M   +  E      
Sbjct: 277 K------FDFFTYG-ARYQNSLMVVPLHIILLLLSPIKKKSYLFNKMKMGIKNENAVKYI 329

Query: 292 -QHDSKVFFGQIFKEK---LQYDLRHLNEVE-----ICDY-----------MLTNCILPH 331
            Q+   +F      EK    +Y+L++L         I  Y           +L   ILPH
Sbjct: 330 EQYIQSIFMKNGLNEKEVFEKYNLKYLGNSSYFRRGIFRYNVAPGERKGKIILRYAILPH 389

Query: 332 LDDYWDKF--LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE 384
           +  Y +KF  +C+   T  +F   + M +++ +DS+    + T   L   LLK++
Sbjct: 390 IQSYSEKFETICMMFKTL-IFSKFKLMAKIN-KDSLENHAVTTCSHLLSNLLKEQ 442


>gi|159471568|ref|XP_001693928.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
           reinhardtii]
 gi|158277095|gb|EDP02864.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
           reinhardtii]
          Length = 1161

 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 244/975 (25%), Positives = 410/975 (42%), Gaps = 159/975 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFE----IYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           H+ SF+++L+  L   V     +  +     Y K   + +   ++ E  V  G       
Sbjct: 48  HLDSFNYLLNSELRKIVAANEKVTCDTDPNFYLKYTNIYVGGPSVDEDMVQVGTT----- 102

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKA-------GGTFTKEVGRVPIMLKSKRCHLR 180
              P + R   + YS P  V + ++  GK        GG     +GR+P+ML+  RC L 
Sbjct: 103 ---PQQCRLRDATYSAPITVDIEYTR-GKEIVVKRGRGGVGAVSIGRMPLMLRCDRCVLY 158

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLIN-NRRNHPIAIKRNAWK 230
           N   AQL + GE P + GGYFIV G EK++         R++I+ +  N  +A   ++  
Sbjct: 159 NKNEAQLAQLGECPLDPGGYFIVRGTEKVILIQEQLSKNRIIIDTDSHNEVMASVTSSTH 218

Query: 231 NR----GLLFSDLGVYIR-SVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM----M 281
            R     ++FS   +Y++ +  +D+     VL  +   S +       +  L  +    +
Sbjct: 219 ERKSKTNIVFSKGKIYLKHNAFQDDVNIFVVLKAMGCESDQEAVQAVGAAALAALLVPSV 278

Query: 282 QSLHEEGIHTQHDSKVFFGQIFKEKLQY----DLRHLNEVEICDYMLTNCILPHLD---- 333
           Q     G+ TQ  +  + G   K   ++      R  ++V+    +L + +L H+     
Sbjct: 279 QEAKGLGVFTQMQALDYLGGKLKASPKFGGGDQKRRKSKVDEARDVLAHVVLCHVPVPRY 338

Query: 334 DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI-MTGG-------SLYLQLLKKEK 385
            +  K   ++ M  ++ + V     +D  D    + + + GG        L+ +L    K
Sbjct: 339 QFAQKIAYVAVMVRRMLYAVLDPACIDDRDYYGNKRLELAGGLLSLLFEDLFKRLNSDIK 398

Query: 386 SGTSAVLKES------DIYAAFRASSIESAMTNFLATGN-----VSAGKNSTLQLMQASG 434
               AVL ++      D+  A R  +I   + + L++GN         +    Q++    
Sbjct: 399 RQADAVLSKANRATQFDVAKAIRTDTITYGLESALSSGNWIIRRFRMERKGVTQVLSRLS 458

Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLL 493
           F+     + RM            S F++ R  S PR L    WG +CP  TP+G  CGL+
Sbjct: 459 FIAAMGMMTRMT-----------SQFEKTRKVSGPRALHPSQWGMLCPADTPEGESCGLV 507

Query: 494 NHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGYIL 551
            +L     ++       L ++   LV LG  P+T +   +       +V L+G +VG  +
Sbjct: 508 KNLALMTHVTTDEEEGPLIRL---LVMLGTEPITAIAPAEMHGHGGALVFLNGTLVG--V 562

Query: 552 DQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN-- 609
            +    LV + R L+  G       E V++             Y+    GR+ RP++   
Sbjct: 563 HRRPHRLVREARELRRAGH----LGEFVHVHLQGDA------CYISCDGGRVCRPLIICD 612

Query: 610 ---------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
                                      LA G +E++   E+    I +  K+    +TTH
Sbjct: 613 AGVPRVRQEHITKLRSGERCEWGFPDFLARGLLEYLDVNEENVSLIALYEKDCNK-LTTH 671

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     +  ++ LIP P  NQSPRN YQC MGKQ MG    N   +    LY L  P 
Sbjct: 672 LEIEPFTIMGVVSGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQMSRMDSLLYLLVYPQ 731

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P       + +  D    G NA VAV+SY+GYD+EDA+++NK S +RGF    + K   
Sbjct: 732 RPLLTSRTIELVGFDKLGAGQNASVAVMSYSGYDIEDAIVMNKYSLDRGFGRCIVLKKYG 791

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
             L   Y    ++ + + +     +A               V+ +++  D  G       
Sbjct: 792 ASLRK-YANRASDRIVAPLPLPGQKA---------------VAPRFRLLDRDG----IAC 831

Query: 823 LEDKLGPDGLVYVGAKL--NERDPM------YSYWKESENRYVTCRYSGKEEMCVEVVRM 874
           + D + P G VY+  +   N RDP+       ++++ S   + +      E   V+ V++
Sbjct: 832 VGDYILP-GDVYINMQRPSNTRDPLPAANMPDAFYRPSPMSWKSTPAMAGERCIVDKVQI 890

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
           ++      S+      +  R  R P +GDKF+SR GQKG+       ED PF++ G+ PD
Sbjct: 891 TANDESHYSIK-----VLIRHTRRPELGDKFSSRHGQKGVVGNIVRQEDFPFSERGVCPD 945

Query: 935 IVFNPHGFPSRMTIG 949
           ++ NPHGFPSRMT+G
Sbjct: 946 LIMNPHGFPSRMTVG 960



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G++Y G + + SG+ G  ++A IF G V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 1004 GFSYSGKDFLTSGITGEPLEAYIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGR 1063

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD + +Y
Sbjct: 1064 SRDGGLRLGEM--ERDCLIAY 1082


>gi|403222729|dbj|BAM40860.1| DNA-directed RNA polymerase III [Theileria orientalis strain
            Shintoku]
          Length = 1220

 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 251/1022 (24%), Positives = 439/1022 (42%), Gaps = 201/1022 (19%)

Query: 68   LGAPHIASFD-FMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHF 126
            +   HI S+D F+L E  D+       +          +  V   +  P +    + I  
Sbjct: 47   IARQHINSYDNFVLREIKDIMRAPSNKVIRTELDPNFFIEFVDIRVGRPCIEENMIPIML 106

Query: 127  NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
                P   R     YS P  V V +    +       E+GR+P+ML+S  C L      +
Sbjct: 107  T---PQMCRIRDLTYSAPIYVDVDYVRGQEYIRKNNLEIGRIPVMLRSCICALSENVSLK 163

Query: 187  LIERGEHPDEWGGYFIVGGHEKLV---------RLLI--NNRRNHPIAI--------KRN 227
             ++  E P + GGYFI+ G EK++         R+++  +N++N    +         R 
Sbjct: 164  SLK--ECPYDPGGYFIIKGVEKVILMQEQLSKSRIIVEMDNKKNICATVTSATAESKSRT 221

Query: 228  A--WKNRGL------LFSDLGVYIRSVKRDESATNNVLHFVTNGSARF---------MFS 270
            A  +KN  L      L  D+ + I            +   ++N S              +
Sbjct: 222  AVTYKNSQLYVKHNSLTDDVPLCIILKAMGVETDQEIAQLISNSSENNPNRDETMSGTQN 281

Query: 271  HRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKL-----------------QYDLRH 313
            +  +   +  +  L++E I+++ D+ +F G+  + ++                 Q  +  
Sbjct: 282  YNNTDDYVIFLNDLYKENINSRLDAILFTGKKIRPRIIAKGFYTSNKERPPKTTQMMIEE 341

Query: 314  LNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED---------- 363
             +++ +C  +L++  +    D+  K   LS M  ++ +VV  +  LD +D          
Sbjct: 342  THDL-LCRVLLSHIPMRDSTDFSGKIKTLSLMAHRVLNVVNNVEPLDDKDHYGNKRLELA 400

Query: 364  ----SIMLQEIMTGGSLYLQ----------LLKKEKSGTSAVLKESDIYAAFRASSIESA 409
                SI+ +++      +L+          +  K  S   + +   DI        +   
Sbjct: 401  GQMISILFEDLYKKFLFHLKKQIEQTLERYIASKTNSHRDSAIPYPDILRNLPTDILTRG 460

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SE 467
            MT  ++TGN +  +      M+ SG   +++ ++R+ Y+S    + R  S F++ R  S 
Sbjct: 461  MTTAISTGNWNIKRFR----MERSG---VSQVLSRLSYISSIGMMTRTNSQFEKGRKVSG 513

Query: 468  PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
            PR L+   +G ICP  TP+G  CGL+ +L+    ++  +PS +L    ++L +LG+ P+ 
Sbjct: 514  PRALQPSQFGLICPCDTPEGESCGLVKNLSLMTHVTSDVPSSILE---TLLFTLGVEPID 570

Query: 528  PV--------IQSIPEQA-----------LMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
             V        + +  E+A            +++   + V  ++D I      KLR   ++
Sbjct: 571  TVSSYDLFHSLNTGTEEAKDEDFRLVLLNGVLLGVHKKVKLLVDGII-----KLRRKGLI 625

Query: 569  GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG--------------- 613
               +      VY    +K       +++ +  GR+ RP++ +  G               
Sbjct: 626  NMFVS-----VYENYQQK------QIHVSSDGGRLCRPLIVVQNGKPKLTDEILQKLLLN 674

Query: 614  --NIEWI---GTFEQVFM----DICITMKEA-YPGITTHRELSKTDFLSNLANLIPMPDC 663
              NI+++   G  E + +    ++ I M+E     +TTH E+S    L  +A LIP P+ 
Sbjct: 675  KINIDYLFNNGILEWIDVNEENNLLIVMREKDINHMTTHLEISPMSILGVVAGLIPFPNH 734

Query: 664  NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
            NQSPRN YQC MGKQ++G+   N  ++    ++ +     P         ++ D  P G 
Sbjct: 735  NQSPRNTYQCAMGKQSIGSIGYNQLHRCDTIVHLMNYTQVPLVTTKTIQLVNFDKLPAGQ 794

Query: 724  NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
            NAIVAV+SY GY++EDA+ILN++S +RGF+     K++  E+ +      +    SG +G
Sbjct: 795  NAIVAVMSYQGYEIEDAIILNRASIDRGFSRCFTLKNISCEITNATPNDSSGYHNSGREG 854

Query: 784  SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP-ANK----ALEDKLGPDGLVYVGAK 838
                                         +  +DP ANK     + +++ P G V +  +
Sbjct: 855  -----------------------------FKDKDPNANKEYVIGVGERVLP-GQVLISTR 884

Query: 839  LNERDPMYSYWKESENRYVTCRYSGKEE----MCVEVVRMSSGFTE----GGSVTPNCAY 890
             N RD   SY   + ++Y      GKE+    M  +    +SG  +      S   N  Y
Sbjct: 885  DN-RDFAASYGNVNADKYDKSSAGGKEDRAKYMSFKYNLNASGHIDRIILTESSNGNRLY 943

Query: 891  -IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             +  R  R P +GDKF+SR GQKG+  +    ED+PFT+SG+VPD+V NPHGFPSRMT+G
Sbjct: 944  KVIVRQSRPPEIGDKFSSRHGQKGVVGLIAEPEDMPFTESGMVPDLVMNPHGFPSRMTVG 1003

Query: 950  FL 951
             L
Sbjct: 1004 KL 1005



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++  G E +YSG+ G+++   IFFG ++YQRL+HMV DK   +    R    + 
Sbjct: 1065 ILIKKGFHPKGKEVLYSGITGNLINTLIFFGPIYYQRLKHMVMDKIHARSRGPRQMLTRQ 1124

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G   + +E + +SS      
Sbjct: 1125 PTEGRSKDGGLRLGEM--ERDCLIAY--------------GASNLLIERLMLSSDVY-NI 1167

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1168 QVCNCCGFMGY 1178


>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
          Length = 1171

 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 248/921 (26%), Positives = 381/921 (41%), Gaps = 153/921 (16%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPAQLI 188
           +P EAR     YS P  V V    D        KE +G VPIML+S+ C L + T  +L 
Sbjct: 102 FPHEARLRNLTYSAPLYVDV--DMDPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELT 159

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNA-----WKNRGLLFSDLGV-- 241
           E  E   + GGYFI+ G EK++        NH    ++NA     W        + GV  
Sbjct: 160 ELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKNAASKYSWVCETRSHVEHGVRP 219

Query: 242 --------YIRSVKRDESATNNV-------------------LHFVTNGSARFMFSHRKS 274
                   Y +S  +     N +                   L FV +   R +  H   
Sbjct: 220 TSTMYVQMYQKSGGKSAITGNQIRAVIPYIRQDIPVVIIFRALGFVAD---REILEH--- 273

Query: 275 MC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNC 327
           +C       L+   +S  EE    Q + +V    I +     ++   + +     +L   
Sbjct: 274 ICYDFSDAELMERFKSSLEEAFVIQ-EQEVALDFIGRRGSAINVSKADRIRYAQDILQKE 332

Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI-MTG---GSLYLQ 379
           +LPH+  +D+ +  K   L ++  KL     G +  D  D    + + + G   G L+  
Sbjct: 333 MLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRI 392

Query: 380 LLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
           L KK      + L       K+ ++  A R+ +I + +   LATGN    K+++      
Sbjct: 393 LFKKLTKDVKSFLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGMQKSAS-----K 447

Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
           +G   +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG ICP  TP+G  
Sbjct: 448 AG---VSQVLNRLTYASSLSHLRRLNT-PLGREGKQAQPRQLHNTHWGMICPAETPEGQA 503

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGY 549
            GL+ +L     IS   P   + +      +  +  + P  Q IP  +  + ++G  VG 
Sbjct: 504 VGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKP--QIIP-HSTKIFVNGNWVG- 559

Query: 550 ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP--- 606
            + +    L+  LR L+   +   +   I  L   E        L ++T  GR+ RP   
Sbjct: 560 -VHREPNELIRTLRSLRRCVDIDAEVSVIRDLMNKE--------LRIYTDAGRVCRPLFI 610

Query: 607 --------------------VMN------LAAGNIEWIGTFEQVFMDICITMKEAYPG-- 638
                               + N      L  G +E I T E+    I +  K+   G  
Sbjct: 611 VEDNQLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGTGSQ 670

Query: 639 ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
           I TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  C N+R +       L
Sbjct: 671 IHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYCSNFRARMDTMANVL 730

Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
             P  P       + L     P G NAIV + SYTGY+ ED++I+N+S+ +RGF     F
Sbjct: 731 NYPQKPLVTTRAMEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGF-----F 785

Query: 759 KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           +S F      Y  Y  +       G             +++         +   Y     
Sbjct: 786 RSTF------YRCYIDQERNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSYH---- 835

Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMY---SYWKESENRYVTCRYSGKEEMCVEVVRMS 875
                  KL  DGLV  G +++  D +    S   +SE+  +  R+  K +    +    
Sbjct: 836 -------KLDNDGLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQRHQ-KRDASTALRSHE 887

Query: 876 SGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSG 930
           +G  +   +T N        + +R  R P +GDKFASR GQKG   + +  ED+PFT  G
Sbjct: 888 NGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEG 947

Query: 931 LVPDIVFNPHGFPSRMTIGFL 951
           + PDIV NPH  PSRMT+G L
Sbjct: 948 ITPDIVVNPHAIPSRMTVGHL 968



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY  +G E MYSG  G  + AQIF G   YQRL+HMV DK  ++
Sbjct: 1005 GYQKHGNEVMYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSR 1048


>gi|403334977|gb|EJY66659.1| RNA polymerase III [Oxytricha trifallax]
          Length = 1146

 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 229/902 (25%), Positives = 382/902 (42%), Gaps = 137/902 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+P+ML +  C L  ++  +L   
Sbjct: 108 PHECRIRDLTYSAPIYVEIEYTKGDRIYLKNEVLIGRMPMMLGASNCWLNGMSHERLASI 167

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLI--NNRRNHPIAIKRNAWKNRGLL---- 235
            E P +  GYFI+ G EK++         R++I  ++++N    +  + ++ +       
Sbjct: 168 KECPYDPRGYFIIKGVEKVLLIQEQMSKNRIIIELDSKQNVCAQVTSSTYERKSRTTIVH 227

Query: 236 -----------FSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSL 284
                      F+D    + + K     T+  +  +    A++         L G+  SL
Sbjct: 228 KNDKFYLKHNTFTDDIPVVVAFKAMGMETDQEIAQIIGTEAKY---------LDGLALSL 278

Query: 285 HEEG---IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-----DYW 336
            E     I +Q  +  F     K    +  R   ++E    +LTN +L H+       Y+
Sbjct: 279 QEASQLNILSQAQALEFIANKVKSLKSFQGRPKTKLEEARDILTNVVLAHIPMSAHLPYF 338

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-----EKSG 387
            K   L  M  ++   V    +LD +D    + +   G L    +  L KK     +K  
Sbjct: 339 AKCRYLGMMIRRIIEAVHDPSKLDDKDYYGNKRLELSGQLISLLFEDLFKKFQFDLKKQI 398

Query: 388 TSAVLKES----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
              ++K+     D     +  +I   +   +++GN S  +    ++ + S    + + ++
Sbjct: 399 DIMLVKQKKEKFDALTCIKPDTITQGLEMSISSGNWSLKR---FKMERKS----VTQVLS 451

Query: 444 RMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ 501
           R+ Y++    + R  S F++ R  S PR L+   WG ICP  TP+G  CGL+ +L     
Sbjct: 452 RLSYIAALGMMARINSQFEKTRKISGPRALQPSHWGIICPSDTPEGESCGLVKNLALTTH 511

Query: 502 ISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
           ++   P K L +I    + LGM    L    +   +   +V L+G+ +G +  +     V
Sbjct: 512 VTTDSPEKPLLRI---CIDLGMEDAALLGGDELYSKNHFLVFLNGQPIGVV--KQPHKFV 566

Query: 560 PKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN----- 614
              R L+  G    +    VY+   +  + +       +  GR++RP++ +  G      
Sbjct: 567 RNFRFLRKRGR--VQEFVSVYMSEQQNTINIA------SDAGRLVRPLIVIERGRPKLQQ 618

Query: 615 ---------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSN 653
                                +E++   E+    I +  + A     TH E+     L  
Sbjct: 619 SQIQDLILGLRDFNDFLREGLLEYLDVNEENNALIALN-ENALTQAHTHMEIDPLTILGC 677

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
           +A LIP P  NQSPRN YQC MGKQ +G+  LN   +    L+ L  P  P  +    + 
Sbjct: 678 VAGLIPYPHHNQSPRNTYQCAMGKQAIGSIGLNQLNRVDTLLFLLTHPQKPLVKTKTIEI 737

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
           ++ +  P G NA VA++SY+GYD+EDA++LNK+S +RGFA     +    +++  Y+   
Sbjct: 738 INFEELPAGQNASVAIMSYSGYDIEDAVVLNKASLDRGFARAMYIRRYQTDIKK-YSNGA 796

Query: 774 TETMYSGVDGSMMQAQIFFGVVHYQRLRHM--VSDKWQTKDYFGRDPANKALEDKLGPDG 831
           T+ +  GV     Q + F    H      M  V +  Q  D F         E++ G   
Sbjct: 797 TDIILPGV-SQKDQKRAFNKKFHALDEDGMARVGESLQNGDVFINKYTPVMGENQTG--- 852

Query: 832 LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI 891
                  LNE D     +K          Y G     V+ V M+S        TP   + 
Sbjct: 853 ------YLNEIDLTTLEYKSQAQ-----SYKGANPAYVDRVIMTS--------TPENPFF 893

Query: 892 GYRIQRN---PTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMT 947
              I R    P +GDKF+SR GQKG+  +  P EDLPF++ +G  PD++ NPHGFPSRMT
Sbjct: 894 IKMITRQSRVPEIGDKFSSRHGQKGVVGLIVPQEDLPFSERNGWCPDLIMNPHGFPSRMT 953

Query: 948 IG 949
           +G
Sbjct: 954 VG 955



 Score = 47.4 bits (111), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 32/179 (17%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F    +E      ++ GY++ G + + SG+ G ++   +F G ++YQRL+H
Sbjct: 969  EGEFKYGTAFSGDPVEEMGKLLIKHGYSFDGKDVLMSGITGEVLPCFVFSGPIYYQRLKH 1028

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    +    +   +    +G + +G    ERD +  Y              
Sbjct: 1029 MVQDKMHSRARGPKSVLTRQPTEGRSREGGLRLGEM--ERDCLIGY-------------- 1072

Query: 863  GKEEMCVEVVRMSSG-FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
            G   + +E + +SS  F     +   C ++GY        G           +CSVK P
Sbjct: 1073 GAANLIMERLMISSDQFVV--YICNRCGFLGYE-------GHCVYCNPHHDNVCSVKMP 1122


>gi|116199389|ref|XP_001225506.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
 gi|88179129|gb|EAQ86597.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
          Length = 1155

 Score =  226 bits (575), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 236/922 (25%), Positives = 372/922 (40%), Gaps = 168/922 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  V + +S D K        + R+P+MLKS +C L     AQ+   
Sbjct: 106 PMECRLRDMTYAAPVVVDITYSRDRKRIVRKDIPLCRIPVMLKSAKCCLSGANNAQMEIM 165

Query: 191 GEHPDEWGGYFIVGGHEKLVRL---LINNR-------------------------RNHPI 222
            E P + GGYFI+ G EK++ +   L  NR                         + + I
Sbjct: 166 NECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKTGGVSASVTSSTHERKSKTYVI 225

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQ 282
             K     N  +L   + + I        +   ++  V  G AR+          L   +
Sbjct: 226 LKKDRIVLNHNVLVEPIPIVIVLKALGGLSDYEIMEVVAGGDARYQDD------FLINFE 279

Query: 283 SLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-----NEVEICDYMLTNCILPHLD---- 333
              + G+ TQ  +  + G   K       R +     + VE     L N I+ H+     
Sbjct: 280 EAAKAGVFTQQQALEYVGSRVKMGGPKKGRSMAAPRRSPVEEGLDALANIIIAHVTIKDL 339

Query: 334 DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--------- 384
           D++ K + +S M  ++         +D  D +  + +   G L L LL ++         
Sbjct: 340 DFYPKSIYISMMVRRVLMAAHNPRLVDDRDFVGNKRLELAGQL-LSLLFEDMFKMFVGGL 398

Query: 385 KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMAE 440
           K       K+ +  +A+      S+   ++  G   A ++    +    M  +G   +  
Sbjct: 399 KGNMEYFFKKPNRTSAYDPVGPISSQGQYITQGLNRAIQSGNWNVKRFNMNRAG---VTH 455

Query: 441 NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------ 492
            ++R+ Y++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL      
Sbjct: 456 VLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLAL 515

Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ--ALMVMLDGRIVGYI 550
           + H+TTN +  E + + +   IP      G+ P+     S   +  + M+ L+G    + 
Sbjct: 516 MTHITTNAE-EEPVKNWIFGLIP------GVEPIRMYTGSEMHKRGSYMIHLNG--TPFA 566

Query: 551 LDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL 610
           + +       + +  +  G   P     + +   E     +  +++ T  GR+ RP + +
Sbjct: 567 ITKHPKEFASRFKTTRRRGHISP----FIGIHINEH----FSAIHIATDEGRICRPYIIV 618

Query: 611 AAGN--------------------------IEWIGTFEQVFMDICITMKEA-YPGITTHR 643
             G                           IE++   E+   D  I ++E      TTH 
Sbjct: 619 KDGKPKLKKEHLRLLQLGKATFDDFLKRSVIEYLDVNEE--NDALIAIREDDVNHSTTHM 676

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  
Sbjct: 677 EIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQR 736

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P         +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    
Sbjct: 737 PMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTA 796

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
           EL+   N  G +    G+                             KD  G   A  A 
Sbjct: 797 ELQQYPN--GRKDRLGGIQ----------------------------KDEAGNTIAKHAC 826

Query: 824 EDKLGPDGLVYVGAKLNERDPMY--------------SYWKESENRYVTCRYSGKEEMCV 869
            DK   DGL  VG +++  + M               S     + R     Y   +   +
Sbjct: 827 LDK---DGLAVVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDDFRPAATNYRIADPAYI 883

Query: 870 EVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
           + V +S+  TE  +   +   +  R  R P +GDKF+SR GQKG+  +    ED+PF+DS
Sbjct: 884 DKVMISN--TEKNT---SIVKVQTRQTRRPELGDKFSSRHGQKGVVGIIADQEDMPFSDS 938

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           GLVPDI+ NPHGFPSRMT+G L
Sbjct: 939 GLVPDIIMNPHGFPSRMTVGKL 960



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 23/152 (15%)

Query: 749  ERGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            ER +  G  F+S  +E      +E G+++ G +   SG+ G   +A +F G ++YQRL+H
Sbjct: 974  ERDYGFGDAFRSHPVEEMGKVLVEHGFSWEGKDYFTSGITGEPHEAYLFNGPIYYQRLKH 1033

Query: 803  MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYS 862
            MV DK  ++    R    +   +    DG + +G    ERD + +Y              
Sbjct: 1034 MVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY-------------- 1077

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            G  ++ +E + +SS  T+   +   C  +GY+
Sbjct: 1078 GASQLLLERLMISSDGTQ-VDICELCGLLGYK 1108


>gi|85001437|ref|XP_955436.1| DNA-directed RNA polymerase iii [Theileria annulata strain Ankara]
 gi|65303582|emb|CAI75960.1| DNA-directed RNA polymerase iii, putative [Theileria annulata]
          Length = 1244

 Score =  226 bits (575), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 263/1053 (24%), Positives = 446/1053 (42%), Gaps = 234/1053 (22%)

Query: 72   HIASFD-FMLDEGLDLAVEDI--AP----IEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
            HI S++ F+L E     ++DI  AP    +  E+Y  +L L  V   I +P         
Sbjct: 51   HINSYNNFVLHE-----IKDIINAPSNKVLRTELY-PSLSLEFVDIKIGKPFFTDH--SK 102

Query: 125  HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK----EVGRVPIMLKSKRCHLR 180
            H  K  P   R     YS P  VT+ +  D     TFT+    E+GR+P+ML+S  C L 
Sbjct: 103  HVFKLTPQLCRIRDFTYSAPILVTIDYFRDY----TFTRKENLEIGRIPVMLRSCICFLS 158

Query: 181  NLT---------------------------PAQLIERG-----------EHPDEWGGYFI 202
            + +                           P  L +             E P + GGYFI
Sbjct: 159  SDSESQSDEDSLGSSEYNHPKKSTKNNFDIPDGLSKEDRESFYKSYMLDECPYDPGGYFI 218

Query: 203  VGGHEKLVRL---LINNRRNHPIAIKRNAW----------KNR-GLLFSDLGVYIR--SV 246
            + G EK++ +   L  +R    + +K+N            K+R  +++ +  +Y+R  S 
Sbjct: 219  IKGVEKVILMQEQLSKSRIIVEMDVKKNICATVTSATAESKSRTAVVYKNSQLYLRINSF 278

Query: 247  KRDE-----------SATNNVLHFVTNGSARFMFSHRKSMCL--------LGMMQSLHEE 287
              D               + ++  ++N S  F  S + +           +  +  L+ E
Sbjct: 279  TDDVPLCIVFKAMGIETDHEIIQLISNSSTNFKKSKKSNQSSNLPNGFDYITFLNDLYNE 338

Query: 288  GIHTQHDSKVFFGQIFKEKL--------QYDLRHLNE---VEICDYMLTNCILPHL---- 332
             I+T+ D+ ++ G+  + ++          D    ++   +E    +L+  +L H+    
Sbjct: 339  NINTRLDALMYIGKKIRPRILGKGFFSSNKDRAPKSKQMIIEDTHDILSRVLLSHIPMRD 398

Query: 333  -DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS----LYLQLLKK---- 383
              D+  K   LS M  ++ +VV  +  LD +D    + +   G     L+    KK    
Sbjct: 399  CRDFSGKIKTLSLMAHRVLNVVNNVEPLDDKDHYGNKRLELAGQMISILFEDFYKKFLNN 458

Query: 384  -EKSGTSAVLK--ES-------------DIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
             +KS  S ++K  ES             DI+       I + M N +ATGN +  +    
Sbjct: 459  MKKSIESIIVKYLESNPNPTKGENSNFPDIFGLMPTDIITNGMQNAIATGNWNIKRFR-- 516

Query: 428  QLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTP 485
              M+ +G   +++ ++R+ Y+S    + +  S F++ R  S PR L+   +G +CP  TP
Sbjct: 517  --MEKTG---VSQVLSRLSYISSIGMMTKTDSQFEKGRKVSGPRALQPSQFGILCPCDTP 571

Query: 486  DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL--------------TPVIQ 531
            +G  CGL+ +L+    ++  +P+ VL    ++L +LG+ P+              T    
Sbjct: 572  EGESCGLVKNLSLMTHVTSDVPTPVLE---TLLFTLGVEPIDTLSSHDMFNPWKGTSGKS 628

Query: 532  SIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLY 591
                 + +V+L+G ++G  + + A  L+  +  L+  G  +      VY    +      
Sbjct: 629  DNRRNSRLVLLNGILLG--IHRNANFLISSIIKLRRKG--LINMFVSVYENSQQNQ---- 680

Query: 592  PGLYLFTGPGRMLRPVMNLAA--------------------------GNIEWIGTFEQVF 625
              +++ +  GR+ RP++ +                            G +EWI   E+  
Sbjct: 681  --VHISSDGGRLCRPLIVVQNSVPKLTDELVQQLVENKIKIDYLFNNGILEWIDVNEE-- 736

Query: 626  MDICITMKEA-YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
             ++ I M+E     +TTH E+S    L  +A LIP P+ NQSPRN YQC MGKQ++G+  
Sbjct: 737  NNLLIVMRERDITNLTTHLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIG 796

Query: 685  LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
             N   +    ++ +     P         ++ D  P G NAIVAV+SY GY++EDA+ILN
Sbjct: 797  YNQLQRCDTVVHLMNYTQQPLVTTKTIQLVNFDKLPAGQNAIVAVMSYQGYEIEDAIILN 856

Query: 745  KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            K+S +RGFA     + +  E+  G       T  +G + +  Q +               
Sbjct: 857  KASIDRGFARCYTLRRLTCEITPG-----NATSINGYNPNKSQNK--------------- 896

Query: 805  SDKWQTKDYF-----GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
             D   T +Y         P    +  K  P      G+   +          +E++Y+  
Sbjct: 897  -DSDSTNEYVIGVGEPVKPGQVLISTKAPPTDFTTNGSMNGKNGESNQSSGTNEDKYIVN 955

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY-IGYRIQRNPTVGDKFASRAGQKGICSVK 918
            +Y       ++ + ++  F        N  Y I  R  R P +GDKF+SR GQKG+  + 
Sbjct: 956  KYDLNTGGYIDRLILTENFNG------NTMYKIMVRQSRPPEIGDKFSSRHGQKGVVGLI 1009

Query: 919  WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
               ED+PFT+SG+VPD++ NPHGFPSRMT+G L
Sbjct: 1010 AEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKL 1042



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +++G++  G E +YSG+ G+ +   IF G ++YQRL+HMV+DK   +    R P  + 
Sbjct: 1089 ILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPRQPITRQ 1148

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G   + +E + +SS      
Sbjct: 1149 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GSSNLLIERLMLSSDVF-NI 1191

Query: 883  SVTPNCAYIGY 893
             +  +C ++GY
Sbjct: 1192 EICTSCGFMGY 1202


>gi|47156951|gb|AAT12334.1| DNA-directed RNA polymerase III subunit 2 130KDa subunit
           [Antonospora locustae]
          Length = 1014

 Score =  226 bits (575), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 235/901 (26%), Positives = 375/901 (41%), Gaps = 164/901 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL-----TPA 185
           P E R     Y G   V + ++   K        +G+VPIML+S  CHL        T  
Sbjct: 8   PEECRLRDLTYCGNIYVDIEYTKHRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDDCETVR 67

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
           +     E P + GGYFIV G E+++ +     +N  IA       N+G  F+ +      
Sbjct: 68  ETYGHRECPLDMGGYFIVKGVERVILIQEQLSKNRIIA----DIDNKGCKFTSVTSSTHD 123

Query: 246 VKRDESAT---------NNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHE------ 286
            K   S           NNV       V    A  M S  +    +G   +L E      
Sbjct: 124 KKSKTSIILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQEGALLEMLEPSL 183

Query: 287 -----EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWD 337
                 G+HTQ  +  F  ++ + +     ++++ ++    +L   +LP++     D   
Sbjct: 184 EHALQTGVHTQLQALDFISKLTRPR-----QNVSRIDEARTILYEVVLPNIPNDGIDMRR 238

Query: 338 KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKKEKSGTS 389
           K + ++ M   L      M+ +D  D +  +     G+L        +L+   + K    
Sbjct: 239 KAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELAGNLLSILFEDTFLRFNSELKKSID 298

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMAENINRM 445
            VL +S       A +  +   N ++   V A       +    M+ +G   + + ++R+
Sbjct: 299 KVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTVRRFRMERAG---VTQVLSRL 355

Query: 446 RYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            Y++   ++ +  S F++ R  S PR L T +WG +CP  TP+G  CGL+ +L    +I+
Sbjct: 356 SYIAMIGSMAKIQSQFEKTRKISGPRSLHTSSWGMLCPADTPEGESCGLVKNLAILAEIT 415

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSLVPK 561
             +P    + +  +L  LG+        I    + + ++ L+G IVG   +    +LV K
Sbjct: 416 TDVPQ---SDVEQLLFQLGVRDFRTCSGIDFYSKHSYLIFLNGTIVGICYNN--NTLVRK 470

Query: 562 LRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------N 614
              ++  G  +      VY K  EK       + + T  GR+ RP++ +  G       +
Sbjct: 471 FVEMRRRG--VVSQFVSVY-KNDEKRT-----ISIATDGGRICRPLIIVENGRQMLEHED 522

Query: 615 IEWI-------------GTFEQVFMDIC------ITMKEA-YPGITTHRELSKTDFLSNL 654
           +E +             G  E  F+D+       I ++E+     TTH E+ +   L  +
Sbjct: 523 LELLRRRYKNPDDLFKEGKVE--FLDVNEENNTKIALRESNICRSTTHLEICEYSILGCV 580

Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
           A LIP P  NQSPRN YQC MGKQ MG   LN   +    L  L  P  P       D +
Sbjct: 581 AGLIPYPHHNQSPRNTYQCAMGKQAMGFVALNQYRRFDTLLNLLVYPQKPLVSTKITDIV 640

Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
           + +  P G N +VAV++Y GYD+EDA+I+NK + +RGF    +++S    L+   N    
Sbjct: 641 NFEKLPAGQNGMVAVMAYAGYDIEDALIINKGALDRGFGRCEVYRSYKHSLKRYSN---- 696

Query: 775 ETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVY 834
             M   + GS     +                         R P  +        DG  +
Sbjct: 697 -GMCDRISGSKHSDGV-------------------------RGPGERVF------DGDFF 724

Query: 835 VGAKLNERDPMYSYWKESENRYVTCRYSGK------EEMCVEVVRMSSGFTEGGSVTPNC 888
           V             +KES       ++SG+        +  +V+   SG  E   +   C
Sbjct: 725 V-------------YKESPTEDADFKFSGELYKNLSPSVVDKVIVARSG--EDQFMVKTC 769

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
                R  R P VGDKF+SR GQKG+  +  P  DLPF++ G VPDI+ NPHGFPSRMT+
Sbjct: 770 ----LRQVRQPEVGDKFSSRHGQKGVIGLVVPETDLPFSEDGQVPDIIMNPHGFPSRMTV 825

Query: 949 G 949
           G
Sbjct: 826 G 826



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
           I ++ GY+Y G +T  +G+ G + +  +FFG V+YQRL+HMV+DK   +    R    + 
Sbjct: 860 ILIKHGYSYCGKDTFTNGITGDVYEGYVFFGPVYYQRLKHMVADKMHARSRGPRAMLTRQ 919

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSY 848
             +    +G + +G    ERD +  Y
Sbjct: 920 PTEGKSREGGLRLGEM--ERDCLIGY 943


>gi|428184687|gb|EKX53541.1| hypothetical protein GUITHDRAFT_64211 [Guillardia theta CCMP2712]
          Length = 1155

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 232/925 (25%), Positives = 383/925 (41%), Gaps = 161/925 (17%)

Query: 121 PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE--------VGRVPIML 172
           P G++     P + R     Y     V + ++ D +AGG   KE        +GR+PIML
Sbjct: 108 PAGVN-EGITPQQCRLRDMTYYAQILVDIEYTRD-QAGGGGKKERVRKDNHPIGRMPIML 165

Query: 173 KSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
           +   C L   +  ++   GE P + GGYF+V G EK+            I I+    KNR
Sbjct: 166 RCSHCVLNGKSETEMSAMGECPLDPGGYFVVRGTEKV------------ILIQEQLSKNR 213

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQ 292
            ++  D      +     +A       +T  + RF   H      + ++ +L   G+ + 
Sbjct: 214 IIIERDAKGQPSASVTSSTAKTKTKTNITIKNGRFQLKHNSFTDSIPIVIALKAMGLTSD 273

Query: 293 HDSKVFFGQ--IFKEKLQYDLRHLNEVEIC---------DYMLTNCILP----------- 330
            +     G   +F + L   L      E+C         DY + N I P           
Sbjct: 274 QEIIQLVGSEALFADDLAASL------EVCATEIRPQALDY-IGNKIKPTKFARRQQSTK 326

Query: 331 ------------------HLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSED--------- 363
                                D+  K + +  M  ++   +     +D +D         
Sbjct: 327 AEEAREKLATVVVSHVPVVKYDFRAKAIYICLMLRRIIQAMHDETVMDDKDYYGNKRLEL 386

Query: 364 -----SIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
                S++ +++    +  +Q + +++    +     D+      + I SA+ N ++TGN
Sbjct: 387 AGQTMSLLFEDVFKSFNSDVQKIAQKQLEKPSRTTTFDVLKYLPPTKITSALVNAISTGN 446

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAW 476
            +  +      M+  G   + + ++R+ Y++    + R  S F++ R  S PR L+   W
Sbjct: 447 WNLRRFG----MERQG---VTQVLSRLSYIAALGMITRVQSQFEKTRKVSGPRALQPSQW 499

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSI 533
           G +CP  TP+G  CGL+ +L+    ++   + +P ++L     V   LG+L      ++ 
Sbjct: 500 GMLCPADTPEGESCGLVKNLSLMTHVTTDDDELPIELLCYDLGV-EDLGILSGE---EAT 555

Query: 534 PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG 593
                +V L+G ++G  L +   + V  LR ++  G ++ + + I    R          
Sbjct: 556 LGNVYLVFLNGLLLG--LHRAPKNFVQLLRAMRRRG-RLGEFVSIYSNARQRT------- 605

Query: 594 LYLFTGPGRMLRPVMN--------------------------LAAGNIEWIGTFEQVFMD 627
           +++    GR+ RP++                           L  G IE++   E+   D
Sbjct: 606 VHISCDGGRVCRPLIIVKNGRSFVTDQHIKEVLSNCRTFSDFLKEGLIEYLDVNEE--ND 663

Query: 628 ICITMKEAYPG-ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
             I + E   G  TTH E+     +   A LIP P  NQSPRN YQC MGKQ +G    N
Sbjct: 664 SLIALYEHGIGPKTTHLEIDPLTVMGACAGLIPNPHHNQSPRNTYQCAMGKQAIGAIAYN 723

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
              +    LY L  P  P  +    + ++    P G NA VAV+SYTGYD+EDA++LN+S
Sbjct: 724 QLQRIDTLLYLLVYPQRPLAQTKTIEFINFHRIPAGQNATVAVMSYTGYDIEDAVVLNRS 783

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           + +RGF    + K     L+   N       Y    G+   A           LR    D
Sbjct: 784 AVDRGFGRTIVLKKSTTSLKRYSNAAEDRITYPQSGGNERLA-----------LRTANLD 832

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEE 866
           +        +    + L +K+ P  +  V   +N  D +    +E   +     Y  K +
Sbjct: 833 RDGIVGVGSKVSQGQILVNKMVPKDISTV---INNPDEL----REDAFKSAPLVYKDKAD 885

Query: 867 MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             V+ V ++S   E   V      +  R  R P +GDKF+SR GQKG+  +  P ED+PF
Sbjct: 886 GYVDQVLLTSNHDEHFLVK-----VLMRTTRRPELGDKFSSRHGQKGVTGIIIPQEDMPF 940

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           T+ GL PD++ NPHGFPSRMT+G L
Sbjct: 941 TEEGLCPDLIMNPHGFPSRMTVGKL 965



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GY++ G E + SG+ G  + A IFFG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 1004 GYHFGGKELLTSGITGEPVPAYIFFGPIYYQKLKHMVQDKMHARHKGPRTVLTRQPTEGR 1063

Query: 828  GPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
              DG + +G    ERD + SY              G   + +E + +SS   +   V   
Sbjct: 1064 SKDGGLRLGEM--ERDCLVSY--------------GSSALLLERLMISSDEFQ-CHVCKK 1106

Query: 888  CAYIGY 893
            C  IGY
Sbjct: 1107 CGLIGY 1112


>gi|426193713|gb|EKV43646.1| hypothetical protein AGABI2DRAFT_188003 [Agaricus bisporus var.
           bisporus H97]
          Length = 1142

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 233/908 (25%), Positives = 368/908 (40%), Gaps = 145/908 (15%)

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
           K  P E R   + YS P  VT+ ++  GK        +GR+PIML+S +C L   T AQL
Sbjct: 103 KVTPHECRLRDTTYSAPIIVTIQYTR-GKNIVQRNVNIGRLPIMLRSNKCVLTGRTEAQL 161

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD--LGVYIRS 245
               E P + GGYF+V G EK+            I ++    KNR ++ +D   GV   S
Sbjct: 162 ARMSECPLDPGGYFVVKGTEKV------------ILVQEQLSKNRIIVETDNVKGVVQAS 209

Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFF-----G 300
                        +V     R    H      L ++ +L   G+  Q D ++        
Sbjct: 210 CTSSTHGGLKSKTYVATKKGRIYLRHNSIHEDLPIVIALKALGV--QSDKEILLLTAGNT 267

Query: 301 QIFKEKLQYDLRHLNEVEI------CDYM------------------------LTNCILP 330
           + +K     +L    ++ I       +Y+                        L   +L 
Sbjct: 268 EAYKIAFSANLEDAAKLGIFTRQQALEYIGTRVKVNRRVVGPRRPAWEEALEALATIVLA 327

Query: 331 HLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-- 384
           H+     D   K + ++ MT ++   +     +D  D +  + +   G L L LL ++  
Sbjct: 328 HVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDYVGNKRLELAGQL-LALLFEDLF 386

Query: 385 -------KSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQAS 433
                  KS    VLK+      F A +      + L  G V A       L    M+ +
Sbjct: 387 KTYNSNLKSAIDKVLKKPSRTTEFDAYNTMQFQGDHLTAGFVRAISTGNWSLKRFKMERA 446

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   +   ++R+ ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CG
Sbjct: 447 G---VTHVLSRLSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACG 503

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL 551
           L+ +L     I+  +  + + Q+ + ++ +  + L    +       +V ++G I+G  L
Sbjct: 504 LVKNLALMTHITTDVEEEPIIQL-AFMLGVEDIRLATGTEIYGPNTFVVNVNGTIIG--L 560

Query: 552 DQIATSLVPKLRMLKIV-----------------------GEKIPKSLEIVYLKR----P 584
            +     V + R L+                         G +I + + IV   R    P
Sbjct: 561 TRHPMRFVSQFRKLRRARRFSEFVSIYVNHHHRTVHIASDGGRICRPMIIVEHGRSKVTP 620

Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
           E    L  G   F            L  G +E++   E+    I +   +  P  TTH E
Sbjct: 621 EHATHLKDGTATFDD---------FLRKGVVEYLDVNEENDTYIALYESDITPH-TTHLE 670

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY    P  P
Sbjct: 671 IEPFTLLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQP 730

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
             +    + +  D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    + +     
Sbjct: 731 MVKTKTIELIGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATL 790

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF--GRDPANKA 822
           +    N        + +D + M A+  + ++    L   V ++    D +   + P N +
Sbjct: 791 IRKYPNGTYDRLADAPIDENGMTAK-RYDIIQPDGLAG-VGERVDPGDIYVNKQSPTNAS 848

Query: 823 LEDKLGPDGLV-YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
                G    V Y    L  + P+  Y  +     V    +  E+  ++V+         
Sbjct: 849 DNSFTGQAASVPYKNTPLTYKSPVAGYIDK-----VMVTDTENEQTLIKVL--------- 894

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                       R  R P +GDKF+SR GQKG+C +    ED+PF D G+ PD + NPHG
Sbjct: 895 -----------IRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHG 943

Query: 942 FPSRMTIG 949
           FPSRMT+G
Sbjct: 944 FPSRMTVG 951



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +     I +E+G++Y G + + SG+ G  ++A ++FG ++YQ+
Sbjct: 962  GVLTGKLQYGTAFGGSKVEDMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQK 1021

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            L+HMV DK   +    R    +   +    +G + +G    ERD +  Y           
Sbjct: 1022 LKHMVMDKMHARARGPRATLTRQPTEGRSREGGLRLGEM--ERDCLIGY----------- 1068

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
               G  ++ +E + +SS   E  +    C  +GY
Sbjct: 1069 ---GATQLLLERLMISSDIFEVNACQ-ECGLMGY 1098


>gi|330934625|ref|XP_003304626.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
 gi|311318641|gb|EFQ87258.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
          Length = 1214

 Score =  225 bits (574), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 238/930 (25%), Positives = 378/930 (40%), Gaps = 192/930 (20%)

Query: 125  HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
            H +   P E R     Y+ P  V + ++           ++GR+PIMLKS +C L + + 
Sbjct: 177  HRSTITPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLADKSD 236

Query: 185  AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR 244
             ++    E P + GGYFI  G EK++  L+  + N          KNR ++ S  G+   
Sbjct: 237  REMAVMDECPLDPGGYFITRGQEKVI--LVQEQLN----------KNRVIVESAKGIMQA 284

Query: 245  SVKRDESATNNVLHFVTNGSARFM--------------------FSHRKSMCLLGMMQSL 284
            SV           + +      ++                     S ++ + ++    S 
Sbjct: 285  SVTSSTHERRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVASDKEILVMIAGEDSA 344

Query: 285  HEEGIHTQHDS----KVFFGQIFKEKLQYDLR--------------HLNEVEICDYMLTN 326
            +++   T  ++    K+F  +   E + + +R              HL  +E     L+N
Sbjct: 345  YQDNFSTNFEACAKEKIFTQERALEYIGHRVRLVKKPLGTSRNRNYHLEAIEC----LSN 400

Query: 327  CILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
             +LPH+     +Y  K L ++ M  ++   +Q    +D  D +  + +   G +   L +
Sbjct: 401  VVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSGQMLSLLFE 460

Query: 383  KE--------KSGTSAVLK------ESDIYAAFRA--SSIESAMTNFLATGNVSAGKNST 426
                      K     VLK      E D ++ F    + I   +   +ATGN S  +   
Sbjct: 461  DHFKRFNHDFKLSIDKVLKKPIRAQEFDAFSHFSVHKNHITMGVERAIATGNWSLKRFK- 519

Query: 427  LQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHT 484
               M  +G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +C   T
Sbjct: 520  ---MDRAGVTHV---LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDT 573

Query: 485  PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT----------------- 527
            P+G  CGL+ +L     I+       + +I  +L +  +  LT                 
Sbjct: 574  PEGEACGLVKNLALMTHITTEDDDDPVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGT 633

Query: 528  PV-IQSIPEQALMVMLDGRIVGYILD-------------QIATSLVPKLRMLKIVGEKIP 573
            P+ I   P+Q L      R +G + +              IAT      R + IV  +  
Sbjct: 634  PIAITDRPKQFLNSFRQLRRMGRVSEFTSIHIDHDHCEVHIATDEGRICRPMIIVENQRS 693

Query: 574  KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMK 633
            K +   YLK   KG   +                  L  G +E++ T E+   D  I +K
Sbjct: 694  K-VTSRYLKALRKGTLDFEDF---------------LTRGLVEYLDTNEE--NDTNIALK 735

Query: 634  EA-YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
            E      TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +  
Sbjct: 736  ETDINQHTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRID 795

Query: 693  GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
              LY +  P  P  +    +    D  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF
Sbjct: 796  TLLYLMVYPQQPMVKTRTIELTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGF 855

Query: 753  AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
                + K    +L++  N  GT              +I  G +                 
Sbjct: 856  GRCQVMKKHVTQLKTYAN--GTSD------------RINAGAL----------------- 884

Query: 813  YFGRDPANKALEDKLGPDGLVYVGAKLNERD-------------PMYSYWKESENRYVTC 859
                D  NK+ +  +G DG+  VGA++   D             P  + +K+   +Y   
Sbjct: 885  ----DTDNKSHQ-AIGKDGIAQVGARIEAGDAYLLKSIPLDTAGPATNTYKDKPEKYKNP 939

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
             +S  ++ C  V    +G T           + +R  R P +GDKF+SR GQKG   +  
Sbjct: 940  DFSYIDKAC--VTENEAGVT--------LIKLLFRQTRRPELGDKFSSRHGQKGTTGLIV 989

Query: 920  PAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
              ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 990  QQEDMPFNDQGICPDIIMNPHGFPSRMTVG 1019



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 18/155 (11%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN +  Y   F    +     I ++ G++Y G + + SG+ G   Q   FFG ++YQ
Sbjct: 1029 AGVLNGTLEYGTAFGGSTVEDMSKILVDKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQ 1088

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
            +L+HMV DK  ++    R    +   +    DG + +G    ERD + +Y          
Sbjct: 1089 KLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEM--ERDCLIAY---------- 1136

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                G  ++ +E + +SS       V   C  +GY
Sbjct: 1137 ----GASQLLLERLMLSSD-AHTVDVCEKCGQMGY 1166


>gi|389583887|dbj|GAB66621.1| DNA-directed RNA polymerase beta subunit [Plasmodium cynomolgi strain
            B]
          Length = 1566

 Score =  225 bits (574), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 131/318 (41%), Positives = 173/318 (54%), Gaps = 18/318 (5%)

Query: 634  EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
            E  P    + EL +T FLS L +L P  D NQSPRN+YQCQM KQTMG   LN  Y    
Sbjct: 971  EQMPQKFEYMELKETSFLSFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFSN 1030

Query: 694  KLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
            K+YR+ TP  P      Y+   MDNFP GTNA+VA+++YTGYDMEDA+I+NKSS ERG  
Sbjct: 1031 KVYRMITPQYPLVVTRDYELYGMDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIF 1090

Query: 754  HGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
               I+K+  I+LE     +G      G +     +                ++     ++
Sbjct: 1091 RTHIYKTEIIDLEKN---HGRGEFILGNNVRYTNSNGGTNTNSTNSNTTGKTNIKLQYEH 1147

Query: 814  FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
             G+          L  DGL  V  K+ E +P+Y+Y  ++    V  ++ G  E  V+ V 
Sbjct: 1148 MGK---------MLNKDGLPRVQQKIVELNPLYAYINKANELTVYEKFKGIGEHYVDCV- 1197

Query: 874  MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
                 T   S     A +  R  R P VGDKFASR GQKG+ S  +P ED+PF++SG+VP
Sbjct: 1198 -----TNYKSTRNQIAIVRLRTTRPPLVGDKFASRHGQKGVVSRLFPQEDMPFSESGIVP 1252

Query: 934  DIVFNPHGFPSRMTIGFL 951
            D++FNPHG PSRMTIG L
Sbjct: 1253 DVIFNPHGIPSRMTIGML 1270



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 14/246 (5%)

Query: 413 FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLR 472
           F  TGN+++     +   Q SG+VI A+ IN +R++++FRA+HRG +FQE++   PR+L 
Sbjct: 573 FFKTGNIAS---ENIGYQQKSGWVIGADEINSLRFVTNFRAIHRGCFFQEIKVLSPRKLL 629

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLT----TNCQIS-EYIPSKVLAQIPSVLVSLGMLPLT 527
            +AWGFICPVHTPDG+PCGLLNHL+     +C  S E     +   +  + V++ +   +
Sbjct: 630 GEAWGFICPVHTPDGSPCGLLNHLSQFSYVHCSASNESHKLNIKLYLKKIGVNVNLDDTS 689

Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEI-VYLKRPE 585
            +     +Q + +++D   + YI +Q    +V KL+  K      +    EI  Y+  P 
Sbjct: 690 GISTIYEDQTIPIVVDSVPITYISEQDFNRVVFKLKYAKNHNLYNLKAYFEINAYMNEPL 749

Query: 586 KGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHREL 645
               L   + + T PGR++RPV NL    IE+I    Q ++ I I  ++        R L
Sbjct: 750 ----LMNSIIINTFPGRLIRPVFNLKMKCIEFISPSYQPYVAIAINYEDIKKNNLARRVL 805

Query: 646 SKTDFL 651
           S  + L
Sbjct: 806 SMKERL 811



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 35/47 (74%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L  GY+YYGTE +YSG+ G  + A IFFGV++YQRLRHM  DK Q +
Sbjct: 1385 LNKGYDYYGTELLYSGIYGVPLHAHIFFGVIYYQRLRHMAYDKAQVR 1431



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 114/293 (38%), Gaps = 47/293 (16%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
           YP   + +   Y G   + +    + +   T T   G +P+M+ S  C+L +L    L +
Sbjct: 159 YPYLCKISTRTYEGEITLKINKKTNDEIIST-TVSAGHIPVMVLSNLCNLSSLNKKMLPQ 217

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
           +GE     GG+F++ G+ K++R +I+ + N  I +      +   L +D  VY+  +   
Sbjct: 218 KGEDESLLGGFFVISGNLKVIRYVIHPKYN-TILLNEENKVHMNCLLNDNSVYVNFL--- 273

Query: 250 ESATNNVLHFVTNGSARFMFS----------------HRKSMCLLGMMQSLHEEGIHT-- 291
              T     F T G AR+  S                 +KS     M   +  E      
Sbjct: 274 ---TCPKFDFFTYG-ARYQNSVMSVPLHVILLLLSPIKKKSYLFNKMKMGIKNENAVKYI 329

Query: 292 -QHDSKVFFGQIFKEK---LQYDLRHL----------------NEVEICDYMLTNCILPH 331
            Q+   +F      EK    +Y+L++L                ++ +    +L   ILPH
Sbjct: 330 EQYIQSIFIKNELNEKEVFEKYNLKYLGNSSYFRSGVFRYTLYSDEKKGKKILKYVILPH 389

Query: 332 LDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE 384
           +  Y +KF  +  M   L      +V   ++DS+    + T   L   LLK +
Sbjct: 390 IQSYSEKFETICMMFRTLIFSKFKLVARINKDSLENHAVTTCSHLLSNLLKDQ 442


>gi|225554621|gb|EEH02917.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
            G186AR]
          Length = 1227

 Score =  225 bits (574), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 242/928 (26%), Positives = 390/928 (42%), Gaps = 187/928 (20%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N + A++   
Sbjct: 181  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLL 240

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E P + GGYFIV G EK+            I ++    KNR ++ +DL   I       
Sbjct: 241  QECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDLKKEIVQASVTS 288

Query: 251  SAT------------------NNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE- 287
            S+                   +NVL      V    A  + S ++ + L+  + S  +E 
Sbjct: 289  SSNERKSKSYIILKKDRIYMRHNVLSEDVPIVILLKAMGIQSDKEMLLLVAGIDSTFQED 348

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                       GI+TQH +  + G   +I ++   + +   N V+     +++ I+ H+ 
Sbjct: 349  FAINFEESVKLGIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVV 408

Query: 334  ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-- 383
                ++  K L ++HM  ++         +D  D +  + +   G L    +  L KK  
Sbjct: 409  VENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQ 468

Query: 384  --EKSGTSAVLKES------DIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K     VLK+       D Y   A   + I   M   ++TGN S  +      M+ +
Sbjct: 469  FDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMNRAISTGNWSLKRFR----MERA 524

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 525  G---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 581

Query: 492  L------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
            L      + H+TTN +  E +   + A     + ++G   L        + A ++ L+G 
Sbjct: 582  LVKNLALMTHITTNDE-EEPVRKLIFALGAEDVQTVGGRELHG------QGAYIIFLNGS 634

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
             +   L +     +   R L+  G ++ + +  V++   +        +++ T  GR+ R
Sbjct: 635  PIA--LTRRPKFFLNSFRRLRRTG-RVSEFIS-VFINHHQNA------VHVATDDGRICR 684

Query: 606  PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            P++                           LA G +E++   E+    I +  +E     
Sbjct: 685  PLIIVEDGKSKVTNRHLRLLRNGTMEFDDFLAHGLVEYLDCNEENDSYIAV-YEEDITQS 743

Query: 640  TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY + 
Sbjct: 744  TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMV 803

Query: 700  TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
             P  P  +    + +  D  P G +A VAV+SY+GYD+EDA++LNK S +RGF    +F+
Sbjct: 804  YPQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFR 863

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
                 L+S  N  GT+                              DK +  D     P 
Sbjct: 864  KYSTNLKSYSN--GTK------------------------------DKLKGPDRENGVPI 891

Query: 820  NK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---VTCRYSGK----------- 864
             K AL D    DGL  VG K+N  + +Y      EN     +T   +G+           
Sbjct: 892  RKHALLDN---DGLAAVGEKVNHGE-VYINKVTPENALSSGITGSDAGRPIAYIPSPQTY 947

Query: 865  ---EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
               +   ++ V +S+   E   +      +  R  R P VGDKF+SR GQKG+  +    
Sbjct: 948  KLPDPSYIDKVMISATEAENQLIK-----VQTRQTRVPEVGDKFSSRHGQKGVVGIIAEH 1002

Query: 922  EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             D+PF+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 1003 ADMPFSDLGIVPDIIMNPHGFPSRMTVG 1030



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1047 FGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQ 1106

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1107 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1150

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  NC ++GY
Sbjct: 1151 QLLLERLMISSDRHE-VDVCENCGFMGY 1177


>gi|409043140|gb|EKM52623.1| hypothetical protein PHACADRAFT_100019 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 1141

 Score =  225 bits (574), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 224/893 (25%), Positives = 366/893 (40%), Gaps = 120/893 (13%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P   T+ ++            +GR+PIML+S +C L   T  QL   
Sbjct: 104 PHECRLRDTTYSAPILATIQYTRGKNVVRRPNVNIGRLPIMLRSNKCVLSGRTEIQLARM 163

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYF+V G EK++         R+++       +          G L S    
Sbjct: 164 SECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVEVDPVKGVVQASCTSSTHGGLKSK--T 221

Query: 242 YIRSVKRDESATNNVLHF---VTNGSARFMFSHRKSMCLLGM-------------MQSLH 285
           Y+ + K      +N +H    +        F   K + LL               ++   
Sbjct: 222 YVATKKGKIYLRHNSIHEDVPIVIALKALGFQSDKEILLLTAGNNEAYKSAFSPNLEEAA 281

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
           + G+ T+H +  + G   K   +         E    +L   +L H+     D+  K + 
Sbjct: 282 KSGVFTKHQALEYIGSRVKVNRKVIGPRRPAWEEALEVLATIVLAHVPVVNMDFRGKAIF 341

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVL 392
           ++ MT ++   +     +D  D +  + +   G L L LL ++         KS    VL
Sbjct: 342 VATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQL-LALLFEDLFKTFNTNLKSAIDKVL 400

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL----MQASGFVIMAENINRMRYM 448
           K+    + F A +    M + +  G V A       L    M+ +G   +   ++R+ ++
Sbjct: 401 KKPSRTSEFDAFNTMQFMGDHITAGFVRAISTGNWSLKRFKMERAG---VTHVLSRLSFI 457

Query: 449 SHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
           S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +
Sbjct: 458 SALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDV 517

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
             + + ++  +L    +   T      P    +V ++G I+G  L +     V   R L+
Sbjct: 518 DEEPIVRLAYMLGVEDISTATGTEIYGP-HTYVVNVNGSIIG--LTRYPGRFVHNFRKLR 574

Query: 567 IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----------------- 609
             G         VY+    +       + + +  GR+ RP++                  
Sbjct: 575 RAGRL--SEFVSVYINHHHRT------VLIASDGGRICRPMIIADRGRPRVTTEHILLLK 626

Query: 610 ---------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPM 660
                    L  G +E++   E+    I +   +  P  TTH E+     L  +A LIP 
Sbjct: 627 EGKMTFDDFLKQGLVEYLDVNEENDSYIALYESDIVP-TTTHLEIEPFTILGAVAGLIPY 685

Query: 661 PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP 720
           P  NQSPRN YQC MGKQ +G    N + +    LY    P  P  +    + +  D  P
Sbjct: 686 PHHNQSPRNTYQCAMGKQAIGAIGYNQQSRIDTLLYLSVYPQQPMVKTKTIELIGYDRLP 745

Query: 721 MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG 780
            G NA VAV+SY+GYD+EDA+I NK+S +RG+    + +     +    N        + 
Sbjct: 746 AGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRVQVLRKNATLIRKYPNGTYDRLADAP 805

Query: 781 VD-GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF--GRDPANKALEDKLGPDGLV-YVG 836
           VD GS +Q +  + ++    L   V ++    D +   + P N       G    V Y  
Sbjct: 806 VDEGSQIQKK--YDIIQADGLAG-VGERVDPGDVYINKQTPTNANDNTFTGQAATVPYKN 862

Query: 837 AKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
           + +  + P+  Y  +     V    +  ++  ++V+                     R  
Sbjct: 863 SPMTYKSPVAGYIDK-----VMVTDTENDQTLIKVL--------------------IRQT 897

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           R P +GDKF+SR GQKG+C +    ED+PF D G+VPD + NPHGFPSRMT+G
Sbjct: 898 RRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGIVPDTIMNPHGFPSRMTVG 950



 Score = 45.8 bits (107), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ- 798
             ++  K  Y   F    +     I +E+G++Y G + + SG+ G  M+A ++FG ++YQ 
Sbjct: 961  GVLAGKLQYGTAFGGSKVEDMSRILVENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQV 1020

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
             L HMV DK   +    R    +   +    +G + +G    ERD +  Y
Sbjct: 1021 SLSHMVVDKMHARARGPRATLTRQPTEGRSREGGLRLGEM--ERDCLIGY 1068


>gi|449328562|gb|AGE94839.1| DNA-directed RNA polymerase III subunit 2 130kDa subunit
           [Encephalitozoon cuniculi]
          Length = 1110

 Score =  225 bits (573), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 251/988 (25%), Positives = 409/988 (41%), Gaps = 197/988 (19%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+D+ +D  +   V     ++ +I   T  L  +   ++ P V    V  +    +P
Sbjct: 23  HIESYDYFVDHEIKALVRANQIVDSDI-DHTFYLKYLDIRVAMPSVEENMVNYNV---FP 78

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA------ 185
            E R     YS    V + +  + +        +G++P+ML+S RCHLR  T        
Sbjct: 79  IECRLRDITYSANIYVDIEYVRNRQIIVKRDVCIGKMPVMLRSSRCHLRRETKGPMEGRK 138

Query: 186 ----QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
               ++ E  E P + GGYFIV G E++V L+      + I I+      +GL  S    
Sbjct: 139 TKDRRIRESQECPLDVGGYFIVRGIERVV-LIQEQLSKNRIIIESGP---KGLFASVTSS 194

Query: 242 YIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL----LGMMQSLH------------ 285
                 +    T +  +++ N     MFS    + +    LG++Q               
Sbjct: 195 TDEHKSKTSVTTRDDCYYLKNS----MFSEEVPVVIMMKALGLVQDREVAECVGKEYFEI 250

Query: 286 ---------EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD--- 333
                     + I T+  + ++     K K +      N +E    +L+  +LP++    
Sbjct: 251 MAPSFGECMSKEIFTREQALLYISSYIKLKPED-----NRIEEVLTVLSEKVLPNVQIEG 305

Query: 334 -DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK--------- 383
            D   K + ++ M  +L      +++ D +D +  +     G L   L +          
Sbjct: 306 CDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFEL 365

Query: 384 EKSGTSAVLKESD-------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
           +KS    + K S         +   +A+ I S +   ++TGN +  +      M+ SG  
Sbjct: 366 KKSIDKILSKRSRAQEFDALTFLNLQANMITSTLARAISTGNWNLKRFR----MERSG-- 419

Query: 437 IMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
            +   ++R  Y+S    + +  S+F++ R  S PR L T +WG +CPV TP+G  CGL+ 
Sbjct: 420 -VTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVK 478

Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM--VMLDGRIVG---- 548
           +L    +I+    +K    I   +  LG++ +  V      Q  M  V L+G I+G    
Sbjct: 479 NLALLAEITTNSDTK---PILDTVYKLGVVDINSVYTREIHQKDMFSVFLNGDIIGITNR 535

Query: 549 --YILDQIA----TSLVPKL---------RMLKIVGE--KIPKSLEIVYLKRPEKGM--- 588
             ++++Q        LV K          R++ I  +  ++ + L I+   R  + +   
Sbjct: 536 ADFLVEQFKLHRRKGLVGKFVSIYKVTVERVIHIASDNGRVCRPLIIIDKNRINQTIISN 595

Query: 589 ---------------GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMK 633
                           +  G  LF    +       L  G IE++   E+   D  + +K
Sbjct: 596 QMDECLKALNISEKVAIESGKSLFDCYLKYKSFTDLLEEGFIEYLDVNEE--NDCLVALK 653

Query: 634 -EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
            E     TTH E+S+   L  +A L+P P  NQSPRN YQC MGKQ +G   LN + +  
Sbjct: 654 PEDIGEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFD 713

Query: 693 GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
             + +L     P       D ++ +  P G NA+VAV+SY+GYD+EDA++LNK+S ERG 
Sbjct: 714 SVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGL 773

Query: 753 AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
               ++K+             T T+       M                          D
Sbjct: 774 FRVEVYKT-------------TTTLLKKHSNGM-------------------------SD 795

Query: 813 YFGRDPANKAL-EDKLGP------DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
               +P    L ED LG       DG VYV    N+  P+   +K          ++GK 
Sbjct: 796 VLWPNPKESVLDEDGLGKPGKMVRDGTVYV----NKMSPVDGTYK----------FTGK- 840

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYI----GYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
                V R    + +   +T +   +      R  R P +GDKF+SR GQKG+  +    
Sbjct: 841 -----VHRGDPAYIDKILITKSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQ 895

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           ED+PF D G+VPDI+ NPHGFPSRMT+G
Sbjct: 896 EDMPFNDQGIVPDIIMNPHGFPSRMTVG 923



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 9/136 (6%)

Query: 719  FP--MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            FP  M    IV +IS     +E   IL+ ++    F    + ++  + ++ G++Y G + 
Sbjct: 916  FPSRMTVGKIVELISGKAGVLE-GQILDSTA----FKENSVEQTCELLIKHGFSYSGKDC 970

Query: 777  MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
              SG  G+ + A IFFG V YQRL+HMV+DK   +    R    +   +    DG + +G
Sbjct: 971  FTSGTTGAPLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLG 1030

Query: 837  AKLNERDPMYSYWKES 852
                ERD +  Y   S
Sbjct: 1031 EM--ERDCLIGYGASS 1044


>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
            hordei]
          Length = 1241

 Score =  225 bits (573), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 247/970 (25%), Positives = 390/970 (40%), Gaps = 202/970 (20%)

Query: 128  KYYPTEARQTRSVYSGPFNVTVAW----------------SWDGKAGGTFTKE----VGR 167
            + +P EAR     YS    V V                  +W  + G T  +E    +G+
Sbjct: 138  QLFPQEARFRNLTYSASLFVDVTQKVLVQSEDEVDLNGDPAWIPEYGKTDVEEEQIFIGK 197

Query: 168  VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH------- 220
            VPIMLKS  C L+ L         E P + GGYF++ G EK++        NH       
Sbjct: 198  VPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYFVINGSEKVLIAQERMAANHVYVFSKA 257

Query: 221  ---PI---AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV---LHFVTNG-------- 263
               P+   A  R+A +  G   S + V + S  ++++A N +   L ++ N         
Sbjct: 258  PPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNKEKTANNTIRATLPYIRNDIPIVIVFR 317

Query: 264  -----SARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL 311
                   R +  H   +C       +L M++   EE    Q D  V    I +      L
Sbjct: 318  ALGIVPDREVLQH---ICYDFNDTPMLEMLKPCIEEAFVIQ-DRDVALDFIGRRGTTTGL 373

Query: 312  RHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIML 367
                       +L   +LPH+         K     +M  +L        ++D  D    
Sbjct: 374  SRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGK 433

Query: 368  QEIMTGG----SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLAT 416
            + I  GG    +L+  L +K        L       +E  I AA ++S+I + +   LAT
Sbjct: 434  KRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLAT 493

Query: 417  GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPRQLRTD 474
            GN    K +    MQA   V  ++ +NR  + S    + R +    ++ + ++PRQL   
Sbjct: 494  GNWGDQKKA----MQAKAGV--SQVLNRFAFASTLSHLRRTNTPIGRDGKIAKPRQLHNT 547

Query: 475  AWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIP 534
             WG +CP  TP+G  CGL+ +L+    ++   PS   A I   L   G+  L   +Q   
Sbjct: 548  HWGMVCPAETPEGQACGLVKNLSLMATVTVGTPS---APIVEFLEEFGLDSLVD-MQLAH 603

Query: 535  EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGL 594
             +A  + ++G  +G   D     LV  LR L+   + I   + +V   R  +       L
Sbjct: 604  AKATKIFVNGVWMGTHDD--PAQLVDTLRDLR-RKDDISHEVSVVRDIRERE-------L 653

Query: 595  YLFTGPGRMLRPV-------MNL---------------------------AAGNIEWIGT 620
             ++T   R+LRPV       M L                             G IE++  
Sbjct: 654  RIYTDASRVLRPVFIVNPHDMTLLIKKRHVEMIGQTIPQTGEEFRWTHLIQEGVIEYLDA 713

Query: 621  FEQVFMDICITMKE------------------------------AYPGITTHRELSKTDF 650
             E+  + IC++  +                                P   TH E+     
Sbjct: 714  EEEESVLICMSTTDLEQSREYKARNGQINLNSADPSARLKSVHTIAPDTWTHCEIHPAMV 773

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            L   A+++P PD NQSPRN+YQ  MGKQ +G P  N+  +     + L  P  P      
Sbjct: 774  LGICASIVPFPDHNQSPRNVYQSAMGKQAIGIPISNFISRADSMNHILYYPQKPLGTTRS 833

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
             + L     P G NAIVA++ Y+GY+ ED++I+N+SS +RG     +F+S++      Y 
Sbjct: 834  MEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRG-----LFRSLY------YR 882

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
             Y  E    GV    MQ + F      ++     + + +   Y           DK+  D
Sbjct: 883  GYMAEEKKVGV----MQLEEF------EKPHRDTTIRMKHGTY-----------DKIDAD 921

Query: 831  GLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
            GL   G +++  D +         +SE   +  +   K++  + +    +G  +   +T 
Sbjct: 922  GLCAPGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTT 981

Query: 887  NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
            N     ++  R++  R P  GDKFASR GQKG   + +  ED+PF+  G+ PDI+ NPH 
Sbjct: 982  NSHGNKFVKVRVRNSRVPQTGDKFASRHGQKGTIGITYRQEDMPFSTEGVTPDIIINPHA 1041

Query: 942  FPSRMTIGFL 951
             PSRMTIG L
Sbjct: 1042 IPSRMTIGHL 1051



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY G  G  +QAQ++ G  +YQRL+HMV DK  ++
Sbjct: 1088 GYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSR 1131


>gi|195381659|ref|XP_002049565.1| GJ20682 [Drosophila virilis]
 gi|194144362|gb|EDW60758.1| GJ20682 [Drosophila virilis]
          Length = 1137

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 230/905 (25%), Positives = 376/905 (41%), Gaps = 150/905 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P +V + ++   +        +GR+P+ML+   C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPISVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKL 166

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM-MQSLHEEG--------- 288
            G Y     +  S T+++   V    A  + S ++ M  +G+  +S +  G         
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIMSHIGLDARSQNRFGASLLEAFNL 282

Query: 289 -IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLS 343
            + TQ  +  + G     K      +    E    +L   IL H+     ++  K + +S
Sbjct: 283 KVFTQQRALDYMGSKLVVKRFQSATNKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVS 342

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTSA 390
            M  ++          D  D    + +   GSL    +  L K+         +K+    
Sbjct: 343 LMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELKMIADKNIPKV 402

Query: 391 VLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSH 450
              + D+    RA+ I   + + +++GN +  +      M+ +G   + + ++R+ Y+S 
Sbjct: 403 KAAQFDVVKHMRAAQITVGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYISA 455

Query: 451 FRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI-- 506
              + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +  
Sbjct: 456 LGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDE 515

Query: 507 -PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
            P   LA    V   +  +   P+         +V ++G ++G  ++     LV  LR +
Sbjct: 516 RPVMTLAYNAGV-EDIREVSGNPINNP---HVFLVFINGNVLGLTINH--RHLVHNLRYM 569

Query: 566 KIVGEKIP-KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN--------------- 609
           +  G      S+   Y +R          +++ T  GR+ RP +                
Sbjct: 570 RRKGRMGSFVSIHTSYTQR---------CIFIHTDGGRLCRPYIIVEKSRPLVQQRHLDE 620

Query: 610 -----------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLI 658
                      L  G IE++   E+    I    +   P  TTH E+     L   A L+
Sbjct: 621 LLRGVRKFDDFLHDGLIEYLDVNEENDSFIAWNEEHIEPH-TTHLEIEPFTLLGVCAGLV 679

Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
           P P  NQSPRN YQC MGKQ MG    N + +    +Y L  P +P  +    +  + D 
Sbjct: 680 PYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFDK 739

Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
            P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++     Y  +T  
Sbjct: 740 LPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR----YANQT-- 793

Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK 838
                             + R+   V D    K  F          D L  DG+V  G +
Sbjct: 794 ------------------FDRIMGPVKDALTNKVIFK--------HDVLDTDGIVAPGEQ 827

Query: 839 -LNER-------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            LN++             +P+     +     V   Y G E   +E V +S+   E   +
Sbjct: 828 VLNKQIMINKEMPAVTSINPLEGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLI 887

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 I  R  R P +GDKF+SR GQKG+  +    ED+PF D G+ PD++ NPHGFPS
Sbjct: 888 K-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDFGICPDMIMNPHGFPS 942

Query: 945 RMTIG 949
           RMT+G
Sbjct: 943 RMTVG 947



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF---KSMFIELE---SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F   K+  ++ E    G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 961  EGKFHYGTAFGGSKAADVQAELVRHGFNYMGKDLFYSGITGAPLEAYIYSGPVYYQKLKH 1020

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1021 MVQDKMHAR 1029


>gi|388581064|gb|EIM21375.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Wallemia sebi CBS 633.66]
          Length = 1152

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 228/916 (24%), Positives = 375/916 (40%), Gaps = 164/916 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P EAR     YS P  ++V ++   +        +GR+P+ML+S +C L       L   
Sbjct: 113 PHEARLRDMTYSAPIRISVEYTRGKQIVRRRGIPIGRLPVMLRSNKCILSGKDEETLARY 172

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E P + GGYF+V G EK+            I ++    KNR ++ +D    +++     
Sbjct: 173 RECPLDPGGYFVVKGTEKV------------ILVQEQLSKNRMIIETDPKKNVQASVTSS 220

Query: 251 SATNNVLHFVTNGSARFMFSHR------------KSMCLLGMMQSLHEEGIHTQHDSKVF 298
           +       +V   + +    H             K+M +    + L     H     +VF
Sbjct: 221 THERKSKSYVATKNGKIYLRHNSIGDDVPIVVALKAMGVTSDKEILQLVAGHDDEYKEVF 280

Query: 299 FGQI---FKEKLQYDLRHLNEV---------------------EICDYMLTNCILPHLD- 333
           +  I    +  +  +++ L  +                     E     L+  +L H+  
Sbjct: 281 YINIEEALRMGIHTEMQALEWIGARSKSARRAVGPAHQKRPVWEDAIETLSTIVLAHVPV 340

Query: 334 ---DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK--- 383
              ++  K + ++ M  ++   +     LD  D +  + +   G L    +  L KK   
Sbjct: 341 ENLNFRPKAIYVAVMVRRVLMAMVDEKMLDDRDYVGNKRLELAGQLLSLLFEDLFKKFNH 400

Query: 384 -EKSGTSAVLKESDIYAAFRASS--------IESAMTNFLATGNVSAGKNSTLQLMQASG 434
             K     VLK+ +    F A +        I S     ++TGN S  +      M+ +G
Sbjct: 401 DLKLNIDKVLKKPNRTTEFDAYTQLLYGGDHITSGFVRAISTGNWSLKRFK----MERAG 456

Query: 435 FVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL 492
              +   ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL
Sbjct: 457 ---VTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGL 513

Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD 552
           + +L     I+  +  + +  I  +L    +  LT   +       +V L+G ++G    
Sbjct: 514 VKNLALMTHITTDVEEEPIVNICYMLGVEDVCLLTGT-ELYRRDTYIVSLNGNLIGVTRH 572

Query: 553 QIA-TSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM--- 608
            +   +   KLR    + E +      VY+      + +       +  GR+ RP++   
Sbjct: 573 PLKFVTQFRKLRRNGFINEFVS-----VYINHHHNSVNIS------SDGGRICRPMIIVE 621

Query: 609 ------------NLAAGNIEWIGTFEQVFMDICITMKE--AYPGIT--------THRELS 646
                        L AG I++     Q  ++     +E  AY  I+        TH E+ 
Sbjct: 622 NSFSKVTSEHIKMLKAGKIDFDAFLTQGLVEYLDVNEENDAYIAISENDITETSTHLEIE 681

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L   A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  
Sbjct: 682 PFTLLGACAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMV 741

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +    + +  D  P G NA+VAV+SY+GYD+EDA+ILNK+S +RGF    + +     + 
Sbjct: 742 KTKTIELIGYDKLPAGQNAMVAVMSYSGYDIEDALILNKASLDRGFGRCQVMRKYSTMIR 801

Query: 767 SGYNYYGTETMYS----GVDGSMMQAQIFFGVVHYQRLR----HMVSDKWQTKDYF--GR 816
              N  GT    +    G+DG + +         YQ L         ++  T D     +
Sbjct: 802 KYPN--GTHDRLADAPIGLDGVIPKK--------YQALEPDGIAGAGERVDTNDVIVNKQ 851

Query: 817 DPANKALEDKLGP---DGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
            P+N AL++ + P   D   Y  A ++ + P+  +  +     V    +  E+  V+ + 
Sbjct: 852 SPSN-ALDNSINPGQADSSTYKNAPMSYKSPVPGFVDQ-----VLITDTESEQTLVKAL- 904

Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
                               R  R P +GDKF+SR GQKG+C +  P  D+PF D G+ P
Sbjct: 905 -------------------LRQTRRPELGDKFSSRHGQKGVCGLIVPQADMPFNDRGITP 945

Query: 934 DIVFNPHGFPSRMTIG 949
           D++ NPHGFPSRMT+G
Sbjct: 946 DVIMNPHGFPSRMTVG 961



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +++GY+Y G ETM SG+ G       + G ++YQ+L+HMV DK   +    R    +   
Sbjct: 997  IDNGYSYAGKETMTSGITGECHTFYTYLGPIYYQKLKHMVLDKMHARARGPRAVLTRQPT 1056

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD +  Y
Sbjct: 1057 EGRSRDGGLRLGEM--ERDALLGY 1078


>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
            CBS 127.97]
          Length = 1210

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 251/970 (25%), Positives = 413/970 (42%), Gaps = 152/970 (15%)

Query: 72   HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPK-VPAGPVGIHFNKYY 130
            HI S+++ ++  L   V+  A I  +I  K   +      +  P+       GI  +   
Sbjct: 104  HIDSYNYFVEVQLKKIVQSSAEIRSDIDPK-FYIKFHDIYLGTPRRTDEEQSGIKIDSTI 162

Query: 131  -PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
             P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N +  ++  
Sbjct: 163  TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222

Query: 190  RGEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRGLL 235
              E P + GGYFIV G EK++ +   L  NR      P        +    +  K++  +
Sbjct: 223  LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYI 282

Query: 236  FSDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------- 287
                G +Y+R      +  N+ +  V    A  + S ++ + L+  +   ++E       
Sbjct: 283  IMKKGRIYLR-----HNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFE 337

Query: 288  -----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DY 335
                  I+TQ  +  + G   +I ++   +     N V      +++ I+ H+     ++
Sbjct: 338  EAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNF 397

Query: 336  WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSG 387
              K L ++HM  ++         +D  D +  + +   G L    +  L KK     K  
Sbjct: 398  RPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMN 457

Query: 388  TSAVLKES------DIY--AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
               VLK+       D Y   A   + I   M   +ATGN S  +      M+ +G   + 
Sbjct: 458  IDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIATGNWSLKRFR----MERAG---VT 510

Query: 440  ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL----- 492
              ++R+ Y++    + R  S F++ R  S PR L+   +G +C   TP+G  CGL     
Sbjct: 511  HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 570

Query: 493  -LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGY 549
             + H+TTN    E  P + L  I      LG   +  V   +   + A +V ++G  +  
Sbjct: 571  LMTHITTN---DEEEPVQKLVFI------LGAEDIQTVGGRECFGQGAYIVFMNGSPIA- 620

Query: 550  ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
             L +     +   R L+ +G +I + +  V++   +K       +++ T  GR+ RP++ 
Sbjct: 621  -LTRRPKYFLNAFRRLRRMG-RISEFVS-VFINHNQKC------VHISTDDGRICRPLII 671

Query: 610  --------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
                                      L+ G +E++   E+   +I +  +E     TTH 
Sbjct: 672  VEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHL 730

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 731  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 790

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  +    +  + D  P G NA+VAV+SY+GYD+EDA++LNK S +RGF    +F+    
Sbjct: 791  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 850

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
             L+S  N  GT+    G       +    G++    L  +       + Y  ++  + AL
Sbjct: 851  NLKSHSN--GTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNAL 908

Query: 824  EDKL-GPDG---LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
               + G D    + Y       + P YSY                    ++ V +S+  T
Sbjct: 909  SSGITGSDAGLPVKYNPTPQTYKLPDYSY--------------------IDKVMIST--T 946

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            EG S       +  R  R P VGDKF+SR GQKG+  +     D+PFTD+GLVPDI+ NP
Sbjct: 947  EGES---QLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNP 1003

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 1004 HGFPSRMTVG 1013



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV 
Sbjct: 1030 FGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQ 1089

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1090 DKMHSRARGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1133

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  +C ++GY
Sbjct: 1134 QLLLERLMISSDRHE-VDVCESCGFMGY 1160


>gi|345568411|gb|EGX51305.1| hypothetical protein AOL_s00054g375 [Arthrobotrys oligospora ATCC
           24927]
          Length = 1166

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 232/909 (25%), Positives = 388/909 (42%), Gaps = 152/909 (16%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  V + +             +GR+PIML+S +C L N +  ++   
Sbjct: 124 PNECRLRDMTYAAPVFVDIQYVRGKAVIARNGVNIGRLPIMLRSNKCVLTNKSEHEMAVL 183

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK----------------NRGL 234
            E P + GGYFI+ G EK++ L+      + I ++ +  K                N  +
Sbjct: 184 KECPLDPGGYFIINGTEKVI-LVQEQLSKNRIIVEADTKKQIVQASVTSSTHERKSNTYV 242

Query: 235 LFSDLGVYIR--SVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE----- 287
           L     +Y+R  SV  D       +  V    A  + S  + + ++    S++++     
Sbjct: 243 LSKKGAIYLRHNSVSED-------VPIVLVLKALGIQSDHEILLMVAGTDSVYQDTFSVN 295

Query: 288 -------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
                  G+ TQ  +  +FG   +   +      +        L   +L H+     ++ 
Sbjct: 296 FEECSKLGVFTQQQALDYFGARVRTSRKILTTRKSYAHEALEALATIVLAHVPVKNLNFR 355

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSG 387
            K L ++ MT ++   +     +D  D +  + +   G L L LL ++         K  
Sbjct: 356 PKALYIAVMTRRILMAMANPQLVDDRDYVGNKRLELAGQL-LSLLFEDLFKRFNGELKMN 414

Query: 388 TSAVLKESDIYAAFRASSIESA--------MTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
              +LK+ +    F A +I S         M   ++TGN S  +      M+ +G   + 
Sbjct: 415 IDKILKKPNRTEEFDAYNILSGHGHTITQGMNRAISTGNWSLKRFK----MERAG---VT 467

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
             ++R+ Y+S    + R  S F++ R  S PR L+   +G +CP  TP+G  CGL+ +L 
Sbjct: 468 HVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 527

Query: 498 TNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
               I+     + + ++  VL +  +L ++      P  A ++ ++G   G  + +    
Sbjct: 528 LMTHITTDDDEEHVIRLAMVLGAEDVLAVSGQELYAP-GAYVIFMNGTPFG--ITRYPAR 584

Query: 558 LVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM--------- 608
            + + R ++ +G KI + + I       +G     G+++ T  GR+ RP++         
Sbjct: 585 FLTRFRKMRRMG-KISEFVSIFI--NHHQG-----GVHIATDGGRICRPLIIVENKKSKV 636

Query: 609 ------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
                 +L AG            +E++   E+    I I   E     TTH E+     L
Sbjct: 637 TLRHIKSLKAGKMTFEDFLKKGLVEYVDVNEENDAHIAIYEHEISAS-TTHLEIEPFTIL 695

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
             +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    
Sbjct: 696 GAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTI 755

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + +  D  P G NA+VAV+SY+GYD+EDA++LNKSS +RGF    + +     L+   N 
Sbjct: 756 ELIKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVLRKYVTTLKKHPN- 814

Query: 772 YGTETM------YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD-PANKALE 824
              +TM       S  +G+ ++      ++    L  +     Q + Y  +  P + A  
Sbjct: 815 ---QTMDRIGDRKSDEEGNPIKKH---RIIEGDGLAAVGERIEQGESYILKQVPTHTANN 868

Query: 825 DKLGPDGLV--YVGAKLNER--DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
              GP   +  Y  A +N +  DP Y      +   ++C  S  E+  ++V+        
Sbjct: 869 PAEGPQNRLGDYKDAAMNYKLTDPAY-----IDKVMISC--SESEQTIIKVLT------- 914

Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
                        R  R P +GDKF+SR GQKG+C +    ED+PF D G  PDI+ NPH
Sbjct: 915 -------------RQTRRPELGDKFSSRHGQKGVCGIIVQQEDMPFNDFGTCPDIIMNPH 961

Query: 941 GFPSRMTIG 949
           GFPSRMT+G
Sbjct: 962 GFPSRMTVG 970



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 17/146 (11%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +  G+NY G + + SG+ G  +QA IFFG ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1004 ILISHGFNYSGKDFVTSGITGESLQAYIFFGPIYYQKLKHMVQDKMHSRARGPRAVLTRQ 1063

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1064 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMLSSDVHE-I 1106

Query: 883  SVTPNCAYIGYRIQRNPTVGDKFASR 908
             +  NC  +GY          KF +R
Sbjct: 1107 DLCENCGLMGYSSWCTTCESSKFVTR 1132


>gi|70952223|ref|XP_745294.1| DNA-directed RNA polymerase, beta subunit [Plasmodium chabaudi
            chabaudi]
 gi|56525572|emb|CAH82099.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            chabaudi chabaudi]
          Length = 1218

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/335 (40%), Positives = 182/335 (54%), Gaps = 37/335 (11%)

Query: 617  WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
            +I + E + +DI     E  P    + EL +T FLS LA+L P  D NQSPRN+YQCQM 
Sbjct: 892  YIDSDENLNLDIY----EQIPQKFEYMELKQTSFLSFLASLTPFSDHNQSPRNIYQCQML 947

Query: 677  KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
            KQTMG   LN  Y    K+YR+ TP  P      Y+   +DNFP GTNA+VA+++YTGYD
Sbjct: 948  KQTMGIQSLNMFYTFTNKIYRMITPQFPLVVTRDYELYGIDNFPSGTNAVVAILAYTGYD 1007

Query: 737  MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
            MEDA+I+NK+S +RG     I+K+  I+L            Y   D       +    + 
Sbjct: 1008 MEDALIINKASSDRGMFRTHIYKTEIIDL------------YKKTDSPDF---VLGNNIR 1052

Query: 797  YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY 856
            Y    + +S K   +++ G+          L  DGL  V  K+ E +P+YSY  + +N  
Sbjct: 1053 YT--TNSLSSKNNMREHKGK---------FLNKDGLPCVNQKMVENNPLYSYINK-KNEL 1100

Query: 857  VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
             T       +  V+ V      +   S     A I  R  R P VGDKFASR GQKG+ S
Sbjct: 1101 TTYEIFNYGDYYVDCV------SNSQSSNNQVAIIRLRTTRPPLVGDKFASRHGQKGVVS 1154

Query: 917  VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
              +P ED+PF++SG+VPD++FNPHG PSRMTIG L
Sbjct: 1155 RLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGML 1189



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 145/267 (54%), Gaps = 21/267 (7%)

Query: 400 AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSY 459
           AF A+S   +++    TGN+++     +   Q SG+ I+A+ IN +R +++FRA+HRGS+
Sbjct: 544 AFTAASF--SVSYLFKTGNITSDH---IHYQQRSGWAILADEINNLRLLTNFRAIHRGSF 598

Query: 460 FQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC---QISEYIPSKVLAQIPS 516
           FQ+++   PR+L  ++WGFICPVHTPDG+PCGLLNHL+  C    ++   P K    I  
Sbjct: 599 FQDVKVLSPRKLLGESWGFICPVHTPDGSPCGLLNHLSQYCCIYNVASNEPHKF--NIKM 656

Query: 517 VLVSLGM---LPLTPVIQSIPE-QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
            L  +G+   L  T  I +I E Q + +++D   + YI +      V KL+  K      
Sbjct: 657 YLKKIGININLDETSGIHTIYENQTIPIIVDSVPITYISENDFKRTVYKLKYAKNHNLYN 716

Query: 573 PKS-LEIV-YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICI 630
            KS  EI+ +L  P     +   + + T  GR++RP++NL    IE+I  + Q ++ I +
Sbjct: 717 LKSHFEIIAHLNEP----SMMDSIIINTCTGRIIRPLLNLKMKCIEFIPGY-QPYVSIAV 771

Query: 631 TMKEAYPGITTHRELSKTDFLSNLANL 657
              +        + L K + + NL ++
Sbjct: 772 NYDDIIKNNLARKILKKKENIVNLNSI 798



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 129/313 (41%), Gaps = 37/313 (11%)

Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFT 162
           +K  I    I  P + +    I  +  YP   + +   Y G   + +   +  +   T T
Sbjct: 115 VKFYISDIKIKSPVIKSDSGNIRND--YPYLCKLSCKTYEGEVLMVINKQYKNEIVQT-T 171

Query: 163 KEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
              G +PIM+ S  C+L+NL   +L ++GE     GG+FI+ G+ K++R +I  + N  +
Sbjct: 172 VSTGYIPIMVLSDLCNLKNLNKKELTQKGEDESLLGGFFIISGNLKIIRYVICPKYNTIL 231

Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQ 282
             + N      LL SD  V+I S+   ++     L     GS   M  H   +CL  + +
Sbjct: 232 LNEENKVHINCLL-SDNSVFINSLVYSKNYEYGYLSRFQ-GSFIHMPFHVLILCLSPIKK 289

Query: 283 SLH-----EEGIHTQHDSK--------VFFGQIFKEK---LQYDLRHL------------ 314
             +     + GI  ++  K        +F      EK    +Y+L+++            
Sbjct: 290 KNYIYNKIKLGIKNENAIKYIENYINSIFLKNNINEKEVFEKYNLKYIGKYANVSRTIFR 349

Query: 315 ----NEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI 370
               N  +    ++  C+LPHL    +KF  +  M  +L      ++   ++DS+    +
Sbjct: 350 YYEGNNYKKGKSIIKYCVLPHLQSNSEKFETVCLMFKQLVLSKFKLINTVNKDSLEYHSV 409

Query: 371 MTGGSLYLQLLKK 383
            T   L   +LK+
Sbjct: 410 TTCSGLLSNILKE 422


>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
            str. Silveira]
          Length = 1197

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 233/901 (25%), Positives = 387/901 (42%), Gaps = 133/901 (14%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L   +P ++   
Sbjct: 151  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPREMYLL 210

Query: 191  GEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRG-LL 235
             E P + GGYFIV G EK++ +   L  NR      P        +    N  K++  ++
Sbjct: 211  HECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYVI 270

Query: 236  FSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE-------- 287
                 +Y+R      +  ++ +  V    A  + S ++ + L+  + S+++E        
Sbjct: 271  LKKDRIYLR-----HNVLSDDIPVVILLKAMGIQSDKEMLLLVAGVDSVYQEDFAINFEE 325

Query: 288  ----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
                GI+TQ  +  + G   +I ++   +     N ++     + + I+ H+     ++ 
Sbjct: 326  SIKLGIYTQQQALEYLGSHIKITRKPNGFGGGRRNYIQEAVEAIASVIISHVQVENMNFR 385

Query: 337  DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGT 388
             K L ++HM  ++         +D  D +  + +   G L    +  L KK     K   
Sbjct: 386  PKALYVAHMARRVLMAKHDSSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNI 445

Query: 389  SAVLKESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINR 444
              VLK+     AF A S+ +   N +  G    +S G  S  +  M+ +G   +   ++R
Sbjct: 446  DKVLKKPVRTEAFDAFSVVAIHGNHITQGMNRAISTGNWSLKRFRMERAG---VTHVLSR 502

Query: 445  MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHL 496
            + Y+S    + R  S F++ R  S PR L+   +G +CP  TP+G  CGL      + H+
Sbjct: 503  LSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHI 562

Query: 497  TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQI 554
            TTN    E  P + L      + +LG   +  V   +   + A ++ L+G  +   L + 
Sbjct: 563  TTN---DEEEPVRKL------VFALGAEDVQAVGGREFYGQGAYIIFLNGSPIA--LTRR 611

Query: 555  ATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----- 609
                +   R L+ +G         VY+   +        +++ T  GR+ RP++      
Sbjct: 612  PKHFLNSFRRLRRMGR--VSEFVSVYINHHQSA------VHIATDDGRICRPLIIVENQK 663

Query: 610  ---------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKT 648
                                 LA G +E++   E+    I +   E     TTH E+   
Sbjct: 664  SKVTDLHLGMLRNGTMEFDDFLAQGLVEYLDVNEENDSYIAVYENEINEN-TTHLEIEPF 722

Query: 649  DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  + 
Sbjct: 723  TILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKT 782

Query: 709  VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
               + +  D  P G +A VAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S 
Sbjct: 783  RTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSY 842

Query: 769  YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
             N  GT+    G D    Q  +          +H + D         +  + +   +K  
Sbjct: 843  SN--GTKDRLLGPD---RQDGVPI-------RKHALLDNDGLAAVGEKVSSGEVYINKAT 890

Query: 829  PDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            P+  +  G   ++     +Y    +       Y   +   ++ V +S+  TEG +     
Sbjct: 891  PENALSSGITGSDAGGPIAYIPSPQT------YKLPDPSYIDKVMIST--TEGEN---QL 939

Query: 889  AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
              +  R  R P VGDKF+SR GQKG+  +     D+PFTD G+VPDI+ NPHGFPSRMT+
Sbjct: 940  LKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTV 999

Query: 949  G 949
            G
Sbjct: 1000 G 1000



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      +  G+NY G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1017 FGYGTAFGGSPVEEMSAILISKGFNYGGKDYLTSGITGEALPAYVFTGPIYYQKLKHMVQ 1076

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1077 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1120

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  NC ++GY
Sbjct: 1121 QLLLERLMISSDRHE-VDVCENCGFMGY 1147


>gi|341038522|gb|EGS23514.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
           var. thermophilum DSM 1495]
          Length = 1157

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 244/928 (26%), Positives = 368/928 (39%), Gaps = 172/928 (18%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           ++  P E R     Y+ P  V + +S D K        + R+P+MLKS +C L   T AQ
Sbjct: 104 DEVTPMECRLRDMTYAAPVVVDIVYSRDRKRIVRKDIPLCRIPVMLKSSKCVLSKATNAQ 163

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRL---LINNR-------------------------R 218
           +    E P + GGYFI+ G EK++ +   L  NR                         +
Sbjct: 164 MEIMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKTGGVQASVTSSTHERKSK 223

Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
            + I  K     N  +L   + + I        +   +L  V  G A +          L
Sbjct: 224 TYVILKKDRIVLNHNVLVEPIPIVIVLKALGGLSDYQILELVAGGDALYQDD------FL 277

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNE-----VEICDYMLTNCILPHLD 333
                    G+ TQ  +  + G   K       R  N      VE     LTN I+ H+ 
Sbjct: 278 VNFDEATRAGVFTQQQALEYIGLRVKMGGSKKGRSPNAPRRSPVEEGLDALTNLIIAHIT 337

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTS 389
               D++ K + ++ M  ++         +D  D +  +     G L   L + +     
Sbjct: 338 IEDLDFYPKAIYIAMMVRRVLMAAHNPKLIDDRDFVGNKRFELAGQLLSLLFEDQFKMFI 397

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQ----LMQASGFVIMAENINR- 444
           A LK +  Y  F+  +  SA   +   G +S+      Q     +Q+  + +   N+NR 
Sbjct: 398 ASLKGNMEYF-FKKPNRTSA---YDPVGPISSQGQYITQGLNRAIQSGNWTVRRFNMNRA 453

Query: 445 --------MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL-- 492
                   + Y+S    + R  S F++ R  S PR L    WG +C   TP+G  CGL  
Sbjct: 454 GVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALHPSQWGMLCTSDTPEGEACGLVK 513

Query: 493 ----LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ--ALMVMLDGRI 546
               + H+TTN    E +   +   +P      G+ P+     S   +  + ++ L+G  
Sbjct: 514 NLALMTHITTNAD-EEPVKDCIFDLVP------GVEPIRVFTGSEMHRPGSYIIHLNG-- 564

Query: 547 VGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
             + L +       + R L+  G   P     V +   E     +  +++ T  GR+ RP
Sbjct: 565 TPFALTRHPKQFAARFRTLRRRGHISP----FVSIHTNEH----FSAIHIATDEGRICRP 616

Query: 607 VMNLAAGN--------------------------IEWIGTFEQVFMDICITMKE-AYPGI 639
            + +  G                           +E++   E+   D  I M E      
Sbjct: 617 YIIVKDGKSRLKPEHLRLLQLGKASFDDFLRLGVVEYLDVNEE--NDALIAMNEDEITRA 674

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
           TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L 
Sbjct: 675 TTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLV 734

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
            P  P         +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+
Sbjct: 735 YPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFR 794

Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
               EL+   N  G +    G                              KD  GR  A
Sbjct: 795 KYTAELQQYAN--GRKDRLGG----------------------------PQKDEEGRTIA 824

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKES--------------ENRYVTC--RYSG 863
             A  D+   DGL  VG ++   + M    KE+               + YV     Y  
Sbjct: 825 KHACLDR---DGLAIVGYQIRSGETM--IMKETPVDVTSTGIGGDRGSDAYVPAPVNYRI 879

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
            +   ++ V +S+  TE  +       +  R  R P +GDKF+SR GQKG+  +    ED
Sbjct: 880 NDPAYIDKVMVSN--TEKNTA---IIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQED 934

Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +PF+DSG+VPDI+ NPHGFPSRMT+G L
Sbjct: 935 MPFSDSGIVPDIIMNPHGFPSRMTVGKL 962



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 23/149 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            +  G  F+S  +E      +E G+++ G +   SG+ G+  +A +F G ++YQRL+HMV 
Sbjct: 979  YGFGDAFRSHPVEEMGRVLIEHGFSWEGKDYFTSGITGNPHEAYLFNGPIYYQRLKHMVQ 1038

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1039 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GAS 1082

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            ++ +E + +SS  T+   V   C   GY+
Sbjct: 1083 QLLLERLMISSDATQ-VDVCEACGLFGYK 1110


>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
          Length = 1210

 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 251/970 (25%), Positives = 414/970 (42%), Gaps = 152/970 (15%)

Query: 72   HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-TLKLNIVKAAISEPKVPAGPVGIHFNKYY 130
            HI S+++ ++  L   V+  A I  +I  K  +K + +       +      GI  +   
Sbjct: 104  HIDSYNYFVEVQLKKIVQSSAEIRSDIDPKFYIKFHDIYLGTPR-RTDEEQSGIKIDSTI 162

Query: 131  -PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
             P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N +  ++  
Sbjct: 163  TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222

Query: 190  RGEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRGLL 235
              E P + GGYFIV G EK++ +   L  NR      P        +    +  K++  +
Sbjct: 223  LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYI 282

Query: 236  FSDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------- 287
                G +Y+R      +  N+ +  V    A  + S ++ + L+  +   ++E       
Sbjct: 283  IMKKGRIYLR-----HNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFE 337

Query: 288  -----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DY 335
                  I+TQ  +  + G   +I ++   +     N V      +++ I+ H+     ++
Sbjct: 338  EAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNF 397

Query: 336  WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSG 387
              K L ++HM  ++         +D  D +  + +   G L    +  L KK     K  
Sbjct: 398  RPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMN 457

Query: 388  TSAVLKES------DIY--AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
               VLK+       D Y   A   + I   M   +ATGN S  +      M+ +G   + 
Sbjct: 458  IDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIATGNWSLKRFR----MERAG---VT 510

Query: 440  ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL----- 492
              ++R+ Y++    + R  S F++ R  S PR L+   +G +C   TP+G  CGL     
Sbjct: 511  HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 570

Query: 493  -LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGY 549
             + H+TTN    E  P + L  I      LG   +  V   +   + A +V ++G  +  
Sbjct: 571  LMTHITTN---DEEEPVQKLVFI------LGAEDIQTVGGRECFGQGAYIVFMNGSPIA- 620

Query: 550  ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
             L +     +   R L+ +G +I + +  V++   +K       +++ T  GR+ RP++ 
Sbjct: 621  -LTRRPKYFLNAFRRLRRMG-RISEFVS-VFINHNQKC------VHISTDDGRICRPLII 671

Query: 610  --------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
                                      L+ G +E++   E+   +I +  +E     TTH 
Sbjct: 672  VEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHL 730

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 731  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 790

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  +    +  + D  P G NA+VAV+SY+GYD+EDA++LNK S +RGF    +F+    
Sbjct: 791  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 850

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
             L+S  N  GT+    G       +    G++    L  +       + Y  ++  + AL
Sbjct: 851  NLKSYSN--GTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNAL 908

Query: 824  EDKL-GPDG---LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
               + G D    + Y       + P YSY                    ++ V +S+  T
Sbjct: 909  SSGITGSDAGLPVKYNPTPQTYKLPDYSY--------------------IDKVMIST--T 946

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            EG S       +  R  R P VGDKF+SR GQKG+  +     D+PFTD+GLVPDI+ NP
Sbjct: 947  EGES---QLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNP 1003

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 1004 HGFPSRMTVG 1013



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV 
Sbjct: 1030 FGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQ 1089

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1090 DKMHSRARGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1133

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  +C ++GY
Sbjct: 1134 QLLLERLMISSDRHE-VDVCESCGFMGY 1160


>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
 gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
          Length = 1196

 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 249/970 (25%), Positives = 414/970 (42%), Gaps = 152/970 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPK-VPAGPVGIHFNKYY 130
           HI S+++ ++  L   V+  A I  +I  K   +      +  P+       GI  +   
Sbjct: 90  HIDSYNYFVEVQLKKIVQSSAEIRSDIDPK-FYIKFHDIYLGTPRRTDEEQSGIKVDSTI 148

Query: 131 -PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N +  ++  
Sbjct: 149 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 208

Query: 190 RGEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRGLL 235
             E P + GGYFIV G EK++ +   L  NR      P        +    +  K++  +
Sbjct: 209 LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYI 268

Query: 236 FSDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------- 287
               G +Y+R      +  N+ +  V    A  + S ++ + L+  +   ++E       
Sbjct: 269 IMKKGRIYLR-----HNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFE 323

Query: 288 -----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DY 335
                 I+TQ  +  + G   +I ++   +     N V      +++ I+ H+     ++
Sbjct: 324 EAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNF 383

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSG 387
             K L ++HM  ++         +D  D +  + +   G L    +  L KK     K  
Sbjct: 384 RPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMN 443

Query: 388 TSAVLKES------DIY--AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
              VLK+       D Y   A   + I   M   +ATGN S  +      M+ +G   + 
Sbjct: 444 IDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIATGNWSLKRFR----MERAG---VT 496

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL----- 492
             ++R+ Y++    + R  S F++ R  S PR L+   +G +C   TP+G  CGL     
Sbjct: 497 HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 556

Query: 493 -LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGY 549
            + H+TTN    E  P      +  ++ +LG   +  V   +   + A +V ++G  +  
Sbjct: 557 LMTHITTN---DEEEP------VQKLVFTLGAEDIQTVGGRECFGQGAYIVFMNGSPIA- 606

Query: 550 ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
            L +     +   R L+ +G +I + +  V++   +K       +++ T  GR+ RP++ 
Sbjct: 607 -LTRRPKYFLNAFRRLRRMG-RISEFVS-VFINHNQKC------VHVSTDDGRICRPLII 657

Query: 610 --------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
                                     L+ G +E++   E+   +I +  +E     TTH 
Sbjct: 658 VEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHL 716

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 717 EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 776

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  +    +  + D  P G NA+VAV+SY+GYD+EDA++LNK S +RGF    +F+    
Sbjct: 777 PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 836

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            L+S  N  GT+    G       +    G++    L  +       + Y  ++  + AL
Sbjct: 837 NLKSYSN--GTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNAL 894

Query: 824 EDKL-GPDG---LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
              + G D    + Y       + P YSY                    ++ V +S+  T
Sbjct: 895 SSGITGSDAGLPVKYNPTPQTYKLPDYSY--------------------IDKVMIST--T 932

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           EG S       +  R  R P VGDKF+SR GQKG+  +     D+PFTD+GLVPDI+ NP
Sbjct: 933 EGES---QLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNP 989

Query: 940 HGFPSRMTIG 949
           HGFPSRMT+G
Sbjct: 990 HGFPSRMTVG 999



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV 
Sbjct: 1016 FGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQ 1075

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1076 DKMHSRARGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1119

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  +C ++GY
Sbjct: 1120 QLLLERLMISSDRHE-VDVCESCGFMGY 1146


>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
 gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
          Length = 1196

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 249/970 (25%), Positives = 414/970 (42%), Gaps = 152/970 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPK-VPAGPVGIHFNKYY 130
           HI S+++ ++  L   V+  A I  +I  K   +      +  P+       GI  +   
Sbjct: 90  HIDSYNYFVEVQLKKIVQSSAEIRSDIDPK-FYIKFHDIYLGTPRRTDEEQSGIKVDSTI 148

Query: 131 -PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N +  ++  
Sbjct: 149 TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 208

Query: 190 RGEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRGLL 235
             E P + GGYFIV G EK++ +   L  NR      P        +    +  K++  +
Sbjct: 209 LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYI 268

Query: 236 FSDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------- 287
               G +Y+R      +  N+ +  V    A  + S ++ + L+  +   ++E       
Sbjct: 269 IMKKGRIYLR-----HNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFE 323

Query: 288 -----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DY 335
                 I+TQ  +  + G   +I ++   +     N V      +++ I+ H+     ++
Sbjct: 324 EAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNF 383

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSG 387
             K L ++HM  ++         +D  D +  + +   G L    +  L KK     K  
Sbjct: 384 RPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMN 443

Query: 388 TSAVLKES------DIY--AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
              VLK+       D Y   A   + I   M   +ATGN S  +      M+ +G   + 
Sbjct: 444 IDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIATGNWSLKRFR----MERAG---VT 496

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL----- 492
             ++R+ Y++    + R  S F++ R  S PR L+   +G +C   TP+G  CGL     
Sbjct: 497 HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 556

Query: 493 -LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGY 549
            + H+TTN    E  P      +  ++ +LG   +  V   +   + A +V ++G  +  
Sbjct: 557 LMTHITTN---DEEEP------VQKLVFTLGAEDIQTVGGRECFGQGAYIVFMNGSPIA- 606

Query: 550 ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
            L +     +   R L+ +G +I + +  V++   +K       +++ T  GR+ RP++ 
Sbjct: 607 -LTRRPKYFLNAFRRLRRMG-RISEFVS-VFINHNQKC------VHVSTDDGRICRPLII 657

Query: 610 --------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
                                     L+ G +E++   E+   +I +  +E     TTH 
Sbjct: 658 VEKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHL 716

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 717 EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 776

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  +    +  + D  P G NA+VAV+SY+GYD+EDA++LNK S +RGF    +F+    
Sbjct: 777 PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 836

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            L+S  N  GT+    G       +    G++    L  +       + Y  ++  + AL
Sbjct: 837 NLKSYSN--GTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNAL 894

Query: 824 EDKL-GPDG---LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
              + G D    + Y       + P YSY                    ++ V +S+  T
Sbjct: 895 SSGITGSDAGLPVKYNPTPQTYKLPDYSY--------------------IDKVMIST--T 932

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           EG S       +  R  R P VGDKF+SR GQKG+  +     D+PFTD+GLVPDI+ NP
Sbjct: 933 EGES---QLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNP 989

Query: 940 HGFPSRMTIG 949
           HGFPSRMT+G
Sbjct: 990 HGFPSRMTVG 999



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV 
Sbjct: 1016 FGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQ 1075

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1076 DKMHSRARGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1119

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  +C ++GY
Sbjct: 1120 QLLLERLMISSDRHE-VDVCESCGFMGY 1146


>gi|119182523|ref|XP_001242390.1| hypothetical protein CIMG_06286 [Coccidioides immitis RS]
 gi|392865284|gb|EAS31067.2| DNA-directed RNA polymerase III polypeptide [Coccidioides immitis RS]
          Length = 1233

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 233/901 (25%), Positives = 387/901 (42%), Gaps = 133/901 (14%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L   +P ++   
Sbjct: 187  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPREMYLL 246

Query: 191  GEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRG-LL 235
             E P + GGYFIV G EK++ +   L  NR      P        +    N  K++  ++
Sbjct: 247  HECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYVI 306

Query: 236  FSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE-------- 287
                 +Y+R      +  ++ +  V    A  + S ++ + L+  + S+++E        
Sbjct: 307  LKKDRIYLR-----HNVLSDDIPVVILLKAMGIQSDKEMLLLVAGVDSVYQEDFAINFEE 361

Query: 288  ----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
                GI+TQ  +  + G   +I ++   +     N ++     + + I+ H+     ++ 
Sbjct: 362  SIKLGIYTQQQALEYLGSHIKITRKPNGFGGGRRNYIQEAVEAIASVIISHVQVENMNFR 421

Query: 337  DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGT 388
             K L ++HM  ++         +D  D +  + +   G L    +  L KK     K   
Sbjct: 422  PKALYVAHMARRVLMAKHDSSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNI 481

Query: 389  SAVLKESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINR 444
              VLK+     AF A S+ +   N +  G    +S G  S  +  M+ +G   +   ++R
Sbjct: 482  DKVLKKPVRTEAFDAFSVVAIHGNHITQGMNRAISTGNWSLKRFRMERAGVTHV---LSR 538

Query: 445  MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHL 496
            + Y+S    + R  S F++ R  S PR L+   +G +CP  TP+G  CGL      + H+
Sbjct: 539  LSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHI 598

Query: 497  TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQI 554
            TTN    E  P + L      + +LG   +  V   +   + A ++ L+G  +   L + 
Sbjct: 599  TTN---DEEEPVRKL------VFALGAEDVQAVGGREFYGQGAYIIFLNGSPIA--LTRR 647

Query: 555  ATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----- 609
                +   R L+ +G         VY+   +        +++ T  GR+ RP++      
Sbjct: 648  PKHFLNSFRRLRRMGRV--SEFVSVYINHHQSA------VHIATDDGRICRPLIIVENQK 699

Query: 610  ---------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKT 648
                                 LA G +E++   E+    I +   E     TTH E+   
Sbjct: 700  SKVTDLHLGMLRNGTMEFDDFLAQGLVEYLDVNEENDSYIAVYENEINEN-TTHLEIEPF 758

Query: 649  DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  + 
Sbjct: 759  TILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKT 818

Query: 709  VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
               + +  D  P G +A VAV+SY+GYD+EDA++LNK S +RGF    +F+     L+S 
Sbjct: 819  RTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSY 878

Query: 769  YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
             N  GT+    G D    Q  +          +H + D         +  + +   +K  
Sbjct: 879  SN--GTKDRLLGPD---RQDGVPI-------RKHALLDNDGLAAVGEKVSSGEVYINKAT 926

Query: 829  PDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            P+  +  G   ++     +Y    +       Y   +   ++ V +S+  TEG +     
Sbjct: 927  PENALSSGITGSDAGGPIAYIPSPQT------YKLPDPSYIDKVMIST--TEGEN---QL 975

Query: 889  AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
              +  R  R P VGDKF+SR GQKG+  +     D+PFTD G+VPDI+ NPHGFPSRMT+
Sbjct: 976  LKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTV 1035

Query: 949  G 949
            G
Sbjct: 1036 G 1036



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      +  G+NY G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1053 FGYGTAFGGSPVEEMSAILISKGFNYGGKDYLTSGITGEALPAYVFTGPIYYQKLKHMVQ 1112

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1113 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1156

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  NC ++GY
Sbjct: 1157 QLLLERLMISSDRHE-VDVCENCGFMGY 1183


>gi|237843771|ref|XP_002371183.1| DNA-directed RNA polymerase I subunit RPA2, putative [Toxoplasma
           gondii ME49]
 gi|211968847|gb|EEB04043.1| DNA-directed RNA polymerase I subunit RPA2, putative [Toxoplasma
           gondii ME49]
          Length = 1388

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 191/687 (27%), Positives = 303/687 (44%), Gaps = 141/687 (20%)

Query: 71  PHIASFDFMLDEGLDLAVEDIAPIEFE------------IYGKT--LKLNIVKAAISEP- 115
           PH+ SFD  L+  L   V+D+  +  +             Y  T  +KL I   +I  P 
Sbjct: 62  PHVRSFDSFLEVYLQEMVKDLPVVYVDPSYDPDKHEANPFYSPTDYIKLAISSVSIGAPV 121

Query: 116 -------KVPAGPVGIHFNKYY-PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV-- 165
                  ++  G  G   ++   P   R+    Y  P  V+   S D + G    KEV  
Sbjct: 122 RFDAAGARLQPGVGGSGDDQLLLPKHCREAHITYGAPLKVSFVRS-DRRDGAALKKEVVV 180

Query: 166 GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
           G  P+M++SK C  R ++PA+L   GE  D+ GGYFI+ G+E+++R ++  R N PIA+K
Sbjct: 181 GMAPLMVRSKLCSTRGMSPAELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALK 240

Query: 226 RNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNG--SARFMFSHRKSMC------- 276
           R A+ NR    +   V +RS + D ++T+N+L    +G  + R + + ++  C       
Sbjct: 241 RPAFANRDAFCTPYAVLLRSQRYDGTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLR 300

Query: 277 ------LLGMMQSLHEEGI---------------------HTQHDSKVF-------FGQI 302
                  L  +++   EG                       T  DS V         G +
Sbjct: 301 CLAGNLSLAQLKAKLLEGCWDDAADATARSQLVEELWGQEATFADSDVLENRPLHQLGLL 360

Query: 303 FKEKLQYDLRHLNEVEIC-DYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
           F + + + LR  +  E    Y++ + +LPHL  + +KF     M  KL  + QG +  +S
Sbjct: 361 FWKAVHWLLRPGSSYEAAGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAES 420

Query: 362 EDSIMLQEIMTGGSL-------------------YLQ---LLKKEKSGTSAVL---KESD 396
            DS   QE++  G +                   YLQ   +LK   +  +A +   K  D
Sbjct: 421 LDSFAYQEVVLPGQILASVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFD 480

Query: 397 IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
           +        I   ++ F+ATGN+   + + L L Q SG+ + A+ +N  R++SHFRAVHR
Sbjct: 481 LATDRCCPEIAQKLSYFMATGNI---RTTQLDLQQLSGWTVTADRLNVHRFLSHFRAVHR 537

Query: 457 GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ--------------- 501
           G +F  M+++  R+L  + WGF+CPVHTPDG PCGLL HLT +                 
Sbjct: 538 GQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIR 597

Query: 502 --------------ISEYIPSKVLAQI-----PSVLVSLGMLPLTPVIQSIPEQALMVML 542
                          S   PS V A       P+V    G++  T    + P     +++
Sbjct: 598 LFLHKHGVCVDLEGTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFP-----LVV 652

Query: 543 DGRIVGYILDQIATSLVPKLRMLKIV-GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           DG +V  +  +     +   R LK    E   +  E+V    P  G G    +++FT PG
Sbjct: 653 DGAVVCRLDRKDFAFWLETFRDLKSREAEDFKQHWEVVGF--PHNG-GNLESIFIFTFPG 709

Query: 602 RMLRPVMNLAAGNIEWIGTFEQVFMDI 628
           R++RPV ++ +G IE+IG   Q +  I
Sbjct: 710 RLVRPVRHIESGRIEYIGPLMQPWAAI 736



 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 169/326 (51%), Gaps = 58/326 (17%)

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            EL  + FLS  A+L P    NQSPRN+YQCQM KQTMGTP  +  ++   K YRL TP  
Sbjct: 834  ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 893

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  R   Y   D D++P G NA+VAV+ YTG+DMEDAMILNK S ERG  HGC++KS  I
Sbjct: 894  PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 953

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            +        G  + Y+            FG V+    +H+ +                  
Sbjct: 954  DAAPASARAGAASQYT------------FGNVNEFGRKHIAT------------------ 983

Query: 824  EDKLGPDGLVYVGAKLNE-----------------RDPMYSYWKESENRYVT-CRYSGKE 865
               L  DG   +GAK+ +                  + +   +K+ E  YV    +    
Sbjct: 984  ---LDGDGFPAIGAKIEKGNTYCRVQTSSSSSSFASNGIQHAYKDGETAYVDGVTFISPP 1040

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
            +   E  R++    +G       A +  R  R P +GDKFASR GQKGI S+ WP ED+P
Sbjct: 1041 DAAHE--RLAKSGLKGCR-----ASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMP 1093

Query: 926  FTDSGLVPDIVFNPHGFPSRMTIGFL 951
            FT+SGLVPDI+FNPHGFPSRMTIG L
Sbjct: 1094 FTESGLVPDILFNPHGFPSRMTIGML 1119



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + +GY YYGTE +YSGV G  + A IF G+++YQRLRHMV+DK Q +
Sbjct: 1195 MRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVR 1241


>gi|320593507|gb|EFX05916.1| DNA-directed RNA polymerase beta [Grosmannia clavigera kw1407]
          Length = 1165

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 246/926 (26%), Positives = 376/926 (40%), Gaps = 158/926 (17%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
           N+  P E R     Y+ P  V +A++ D K        +GR+P+MLKS +C L   T +Q
Sbjct: 102 NEVTPMECRLRDMTYAAPIVVDIAYTRDKKRIIRRNITLGRMPVMLKSSKCCLSGATNSQ 161

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL------- 239
           +    E P + GGYFIV G EK++  LI  + +    I  +  KN G++ + +       
Sbjct: 162 MEVMNECPLDPGGYFIVNGTEKVI--LIQEQLSKNRVIVESEEKN-GVISASVTSSTHER 218

Query: 240 --GVYIRSVKRDESATNNVL----------------------HFVTNGSARFM------F 269
               Y+   K   +  +NVL                        V     R+       F
Sbjct: 219 KSKTYVTLKKERIALQHNVLVDNIPIVIVLKAFGGLTDYEIMQLVAGSDGRYQDDFAINF 278

Query: 270 SHRKSMCLLGMMQSLHEEGIHTQHDSK---VFFGQIFKEKLQYDLRHLNEVEICDYMLTN 326
                M +    Q+L   G   +  ++      G     +        N VE     L N
Sbjct: 279 DEAAKMGVFTQQQALEYVGARVKMGTRNGGGPGGGPGGMRPMGPPTKRNNVEEGLDALAN 338

Query: 327 CILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YL 378
            I+ H+     D++ K + ++ M  ++   +     +D  D +  + +   G L    + 
Sbjct: 339 IIIAHVPIDGLDFFPKAVYVAMMARRVLMAMHNPQLVDDRDFVGNKRLELAGQLLSLLFE 398

Query: 379 QLLKKEKS----GTSAVLKESDIYAAFRASSIESAMTNFLATGN-VSAGKNSTLQL---- 429
            L KK +S          K+     AF        +T+  ATG+ +S G N  +Q     
Sbjct: 399 DLFKKFQSDLRFNIDKFFKKPHQGVAF------DPLTSISATGHHISQGMNRAIQTGNWS 452

Query: 430 -----MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPV 482
                M   G   +   ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP 
Sbjct: 453 VKRFGMNRGG---VTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS 509

Query: 483 HTPDGTPCGLLNHLTTNCQISEYIPS-KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVM 541
            TP+G  CGL+ +L     I+ ++    V A + S+  S+   PL     +   +A   +
Sbjct: 510 DTPEGEACGLVKNLALMTHITTHVEEGPVRAWVFSLDDSVE--PLRNFSGAEMHRAGWYV 567

Query: 542 LDGRIVGYILDQIATSLVPKLRMLK-------IVGEKIPKSLEIVYLKRPEKGMGLYPGL 594
           +      Y L         + R ++        V   I      V++   E G    P +
Sbjct: 568 VHVNGTPYALTPNPRRFCARFRTMRRRGWISPFVSININSHFASVHIATDE-GRICRPYI 626

Query: 595 YLFTGPGRM----LRPVMN--------LAAGNIEWIGTFEQVFMDICITMKEA-YPGITT 641
            +  G  R+    LR +          L  G IE++   E+   D  + + EA     +T
Sbjct: 627 IVKNGQSRLRAEHLRLLQQGRVTFDDFLRRGVIEYLDVNEE--QDALVALYEADCTAAST 684

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N  ++    LY L  P
Sbjct: 685 HMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFHRIDTLLYTLVYP 744

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P       + +  D  P G NA V V+SY+GYD+EDA++LNK+S +RG+    +F+  
Sbjct: 745 QRPMVATKTIELVHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGYGRCQVFRKY 804

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
             E++   N  G      G +                            +D  G   +  
Sbjct: 805 VAEMQRFPN--GRTERVGGPE----------------------------RDKDGEKISKH 834

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKES----------------ENRYVTCRYSGKE 865
           A  D    DGL  VG ++   D M    KES                E R  +  Y   +
Sbjct: 835 AAIDN---DGLAAVGWRVQHGDVMIK--KESPVDLTTTGIGADRGSNEYRDSSLTYRIND 889

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              V+ V +S   TE  ++      +  R  R P +GDKF+SR GQKG+  +    ED+P
Sbjct: 890 PSYVDKVMVSQ--TEKDTL---IFKVQTRQTRRPEIGDKFSSRHGQKGVVGIIVEQEDMP 944

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F DSGLVPDI+ NPHG+PSRMT+G L
Sbjct: 945 FADSGLVPDIIMNPHGYPSRMTVGKL 970



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 23/151 (15%)

Query: 750  RGFAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            R + +G  F+S  +E      +  G+++ G +   SG  G  M+A IF G ++YQRL+HM
Sbjct: 985  RDYGYGDAFRSHPVEAMGEELVRHGFSWAGKDCFTSGTTGEPMEAHIFNGPIYYQRLKHM 1044

Query: 804  VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSG 863
            V DK  ++    R    +   +    DG + +G    ERD + +Y              G
Sbjct: 1045 VQDKMHSRAKGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------G 1088

Query: 864  KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
              ++ +E +  SS  T    +  +C   GY+
Sbjct: 1089 ASQLLLERLMFSSDATS-LDLCQHCGLFGYK 1118


>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
 gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
          Length = 1210

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 249/970 (25%), Positives = 414/970 (42%), Gaps = 152/970 (15%)

Query: 72   HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPK-VPAGPVGIHFNKYY 130
            HI S+++ ++  L   V+  A I  +I  K   +      +  P+       GI  +   
Sbjct: 104  HIDSYNYFVEVQLKKIVQSSAEIRSDIDPK-FYIKFHDIYLGAPRRTDEEQSGIKIDSTI 162

Query: 131  -PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
             P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N +  ++  
Sbjct: 163  TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222

Query: 190  RGEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRGLL 235
              E P + GGYFIV G EK++ +   L  NR      P        +    +  K++  +
Sbjct: 223  LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYI 282

Query: 236  FSDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------- 287
                G +Y+R      +  N+ +  V    A  + S ++ + L+  +   ++E       
Sbjct: 283  IMKKGRIYLR-----HNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFE 337

Query: 288  -----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DY 335
                  I+TQ  +  + G   +I ++   +     N V      +++ I+ H+     ++
Sbjct: 338  EAVKLNIYTQQQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNF 397

Query: 336  WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSG 387
              K L ++HM  ++         +D  D +  + +   G L    +  L KK     K  
Sbjct: 398  RPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMN 457

Query: 388  TSAVLKES------DIY--AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
               VLK+       D Y   A   + I   M   +ATGN S  +      M+ +G   + 
Sbjct: 458  IDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIATGNWSLKRFR----MERAG---VT 510

Query: 440  ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL----- 492
              ++R+ Y++    + R  S F++ R  S PR L+   +G +C   TP+G  CGL     
Sbjct: 511  HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 570

Query: 493  -LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGY 549
             + H+TTN    E  P      +  ++ +LG   +  V   +   + A +V ++G  +  
Sbjct: 571  LMTHITTN---DEEEP------VQKLVFTLGAEDIQTVGGRECFGQGAYIVFMNGSPIA- 620

Query: 550  ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
             L +     +   R L+ +G +I + +  V++   +K       +++ T  GR+ RP++ 
Sbjct: 621  -LTRRPKYFLNAFRRLRRMG-RISEFVS-VFINHNQKC------VHVSTDDGRICRPLII 671

Query: 610  --------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
                                      L+ G +E++   E+   +I +  +E     TTH 
Sbjct: 672  VEKKRSRVTARHLSALRNGTMDFDDFLSHGLVEYVDVNEENDANIAVYEREIDAN-TTHL 730

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 731  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 790

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  +    +  + D  P G NA+VAV+SY+GYD+EDA++LNK S +RGF    +F+    
Sbjct: 791  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 850

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
             L+S  N  GT+    G       +    G++    L  +       + Y  ++  + AL
Sbjct: 851  NLKSYSN--GTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNAL 908

Query: 824  EDKL-GPDG---LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
               + G D    + Y       + P YSY                    ++ V +S+  T
Sbjct: 909  SSGITGSDAGLPVKYNPTPQTYKLPDYSY--------------------IDKVMIST--T 946

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            EG S       +  R  R P VGDKF+SR GQKG+  +     D+PFTD+GLVPDI+ NP
Sbjct: 947  EGES---QLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNP 1003

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 1004 HGFPSRMTVG 1013



 Score = 47.8 bits (112), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      +  G++Y G + + SG+ G  +   +F G ++YQ+L+HMV 
Sbjct: 1030 FGYGTPFGGSPVEEMSAILVNHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQ 1089

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1090 DKMHSRARGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1133

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  +C ++GY
Sbjct: 1134 QLLLERLMISSDRHE-VDVCESCGFMGY 1160


>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
           subunit RPB2-like [Oryzias latipes]
          Length = 1120

 Score =  224 bits (571), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 244/904 (26%), Positives = 369/904 (40%), Gaps = 169/904 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVG-------GHEKLVR----------------------LLINN 216
            L E  E P + GGYFI+          EK+                        L  ++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLEXSS 229

Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK---RDESATNNVLHFVTNGSARFMFSHR- 272
           R    I +   A   +G+  S +G  I S     R E     V   +   S R +  H  
Sbjct: 230 RPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHII 289

Query: 273 ---KSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCIL 329
                  ++ M++   +E    Q +  V    I     +  +     ++    +L   +L
Sbjct: 290 YDFDDPEMMEMVKPSLDEAFVIQ-EQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEML 348

Query: 330 PHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEK 385
           PH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L   L +   
Sbjct: 349 PHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFR--- 405

Query: 386 SGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
                +LKE  IYA              A +   I   +   LATGN    K +     Q
Sbjct: 406 GMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKA----HQ 461

Query: 432 ASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
           A   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG +CP  TP+G 
Sbjct: 462 ARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 518

Query: 489 PCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
             GL+ +L     IS    PS +L      L    M  L  +  +    A  + ++G  V
Sbjct: 519 AVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWV 574

Query: 548 GYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
           G   D     L+  LR L+       + ++I+  +                         
Sbjct: 575 GIHKD--PEQLMNTLRKLR-------RQMDIIVSEDL----------------------- 602

Query: 608 MNLAAGNIEWIGTFEQVFMDICITMKE------AYPGITTHRELSKTDFLSNLANLIPMP 661
             +A+G +E+I T E+  + + +T  +      AY    TH E+  +  L   A++IP P
Sbjct: 603 --VASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFP 660

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           D NQSPRN YQ  MGKQ MG    N+  +     + L  P  P       + L     P 
Sbjct: 661 DHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPA 720

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G N+IVA+ SYTGY+ ED++I+N+S+ +RGF     F+S+F      Y  Y  +    G 
Sbjct: 721 GINSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGF 769

Query: 782 DGSMMQAQIFFGVVHY--QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
           D    Q +IF        Q +RH                   A+ DKL  DGL+  G ++
Sbjct: 770 D----QEEIFEKPTRETCQGMRH-------------------AIYDKLDDDGLIAPGVRV 806

Query: 840 NERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------ 887
           +  D +          + E      RY+ ++  C   +R S +G  +   VT N      
Sbjct: 807 SGEDVIIGKTVTLPENDDELDSTNKRYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKF 864

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
           C  I  R  R P +GDKFASR GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMT
Sbjct: 865 CK-IRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMT 923

Query: 948 IGFL 951
           +G L
Sbjct: 924 VGHL 927



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 963  EYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSR 1008


>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
 gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
          Length = 1205

 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 241/941 (25%), Positives = 379/941 (40%), Gaps = 178/941 (18%)

Query: 127  NKYYPTEARQTRSVYSGPFNVTVAWSWDGKA--------GGTFTKE-VGRVPIMLKSKRC 177
            N  +P  AR     YS P  V V      K            FTK  +G+VPIML+S  C
Sbjct: 127  NTLFPKAARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIMLRSSYC 186

Query: 178  HLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR---NAWK---- 230
             L NL+   L E GE P + GGYFIV G EK++        NH    K+   N +     
Sbjct: 187  SLYNLSEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSSNHVYVFKKRQPNKYAYVAE 246

Query: 231  ----NRGLLFSDLGVYIRSVKRDES----------------------ATNNVLHFVTNGS 264
                + G   +  G+++R + R  S                           L FV +  
Sbjct: 247  VRSISEGQNKAPSGMFVRMLSRSNSKGAYGQYIRATLPYIRTEIPIIVVFRALGFVADKD 306

Query: 265  --ARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY 322
              A   +    +  +  +  SL E  +    + +V    I K            ++    
Sbjct: 307  ILAHICYDFADTQMMELLRPSLEEAFV--IQNQQVALDYIGKRGSTVGFTREKRIKYAKE 364

Query: 323  MLTNCILPHLD--DYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI-MTG---G 374
            +L   +LPH+   +Y +  K     ++  +L   V G    D  D    + + + G   G
Sbjct: 365  ILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLLG 424

Query: 375  SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
             L+  L +K      + +       K+ ++  A +A +I S +   LATGN         
Sbjct: 425  GLFRMLFRKLTRDVRSYVQKCVDGGKDVNLQFAIKAKTITSGLKYSLATGNWG------- 477

Query: 428  QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
            Q   A     +++ +NR+ +   +SH R ++     +E + ++PRQL    WG +CP  T
Sbjct: 478  QANAAGTRAGVSQVLNRLTFASTLSHLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAET 536

Query: 485  PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
            P+G  CGL+ +L     I+    +  + +      +     ++P +  IP Q+  + ++G
Sbjct: 537  PEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAV--IP-QSTKIFVNG 593

Query: 545  RIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
              VG  + +    LV  LR L+    ++  + E+  ++           L L+T  GR  
Sbjct: 594  CWVG--IHRNPDLLVRTLRQLR---RQVDVNTEVGVVRNIN-----LKELRLYTDYGRCS 643

Query: 605  RPVMNL------------------------------AAGNIEWIGTFEQVFMDICITMK- 633
            RP+  +                              A G IE++ T E+    I +T+  
Sbjct: 644  RPLFIVDKKRLRIKKNDIIALQMRESSEDSGWHDLVAKGFIEYVDTEEEETTMIAMTIND 703

Query: 634  ---------EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
                     EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG   
Sbjct: 704  LTNSRVNPDEAYAETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 763

Query: 685  LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
             N++++     Y L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N
Sbjct: 764  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMN 823

Query: 745  KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            +SS +RG     +F+S+F      +  Y  E    G                        
Sbjct: 824  QSSIDRG-----LFRSLF------FRSYRDEEKKMGT----------------------- 849

Query: 805  SDKWQTKDYFGRDPANKALE------DKLGPDGLVYVGAKLNERDPMYSYW---KESENR 855
                  K+ FGR      +       DKL  DG    G +++  D +        + E +
Sbjct: 850  ----LVKEDFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTTPISQDEAQ 905

Query: 856  YVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAG 910
              + RY+ K+     +    +G  +   +T N        I  R  R P +GDKF+SR G
Sbjct: 906  GQSARYTRKDH-STSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHG 964

Query: 911  QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            QKG   + +  ED+P++  G+ PDI+ NPH  PSRMTIG L
Sbjct: 965  QKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQL 1005



 Score = 48.5 bits (114), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G E MY+G  G ++ A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1042 GYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1091


>gi|221504639|gb|EEE30312.1| DNA-directed RNA polymerase I, beta subunit, putative [Toxoplasma
           gondii VEG]
          Length = 1388

 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 193/687 (28%), Positives = 304/687 (44%), Gaps = 141/687 (20%)

Query: 71  PHIASFDFMLDEGLDLAVEDIA---------PIEFEI---YGKT--LKLNIVKAAISEP- 115
           PH+ SFD  L+  L   V+D+          P + E    Y  T  +KL I   +I  P 
Sbjct: 62  PHVRSFDSFLEVYLQEMVKDLPVVYVDPSYDPDKHEANPYYSPTDYIKLAISSVSIGAPV 121

Query: 116 -------KVPAGPVGIHFNKYY-PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV-- 165
                  ++  G  G   ++   P   R+    Y  P  V+   S D + G    KEV  
Sbjct: 122 RFDAAGARLQPGVGGSGDDQLLLPKHCREAHITYGAPLKVSFVRS-DRRDGAALKKEVVV 180

Query: 166 GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
           G  P+M++SK C  R ++PA+L   GE  D+ GGYFI+ G+E+++R ++  R N PIA+K
Sbjct: 181 GMAPLMVRSKLCSTRGMSPAELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALK 240

Query: 226 RNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNG--SARFMFSHRKSMC------- 276
           R A+ NR    +   V +RS + D ++T+N+L    +G  + R + + ++  C       
Sbjct: 241 RPAFANRDAFCTPYAVLLRSQRYDGTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLR 300

Query: 277 ------LLGMMQSLHEEGI---------------------HTQHDSKVF-------FGQI 302
                  L  +++   EG                       T  DS V         G +
Sbjct: 301 CLAGNLSLAQLKAKLLEGCWDDAADATARSQLVEELWGQEATFADSDVLENRPLHQLGLL 360

Query: 303 FKEKLQYDLRHLNEVEIC-DYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
           F + + + LR  +  E    Y++ + +LPHL  + +KF     M  KL  + QG +  +S
Sbjct: 361 FWKAVHWLLRPGSSYEAAGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAES 420

Query: 362 EDSIMLQEIMTGGSL-------------------YLQ---LLKKEKSGTSAVL---KESD 396
            DS   QE++  G +                   YLQ   +LK   +  +A +   K  D
Sbjct: 421 LDSFAYQEVVLPGQILASVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFD 480

Query: 397 IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
           +        I   ++ F+ATGN+   + + L L Q SG+ + A+ +N  R++SHFRAVHR
Sbjct: 481 LATDRCCPEIAQKLSYFMATGNI---RTTQLDLQQLSGWTVTADRLNVHRFLSHFRAVHR 537

Query: 457 GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ--------------- 501
           G +F  M+++  R+L  + WGF+CPVHTPDG PCGLL HLT +                 
Sbjct: 538 GQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIR 597

Query: 502 --------------ISEYIPSKVLAQI-----PSVLVSLGMLPLTPVIQSIPEQALMVML 542
                          S   PS V A       P+V    G++  T    + P     +++
Sbjct: 598 LFLHKHGVCVDLEGTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFP-----LVV 652

Query: 543 DGRIVGYILDQIATSLVPKLRMLKIV-GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           DG +V  +  +     +   R LK    E   +  E+V    P  G G    +++FT PG
Sbjct: 653 DGAVVCRLDRKDFAFWLETFRDLKSREAEDFKQHWEVVGF--PHNG-GNLESIFIFTFPG 709

Query: 602 RMLRPVMNLAAGNIEWIGTFEQVFMDI 628
           R++RPV ++ +G IE+IG   Q +  I
Sbjct: 710 RLVRPVRHIESGRIEYIGPLMQPWAAI 736



 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 169/326 (51%), Gaps = 58/326 (17%)

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            EL  + FLS  A+L P    NQSPRN+YQCQM KQTMGTP  +  ++   K YRL TP  
Sbjct: 834  ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 893

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  R   Y   D D++P G NA+VAV+ YTG+DMEDAMILNK S ERG  HGC++KS  I
Sbjct: 894  PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 953

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            +        G  + Y+            FG V+    +H+ +                  
Sbjct: 954  DAAPASARAGAASQYT------------FGNVNEFGRKHIAT------------------ 983

Query: 824  EDKLGPDGLVYVGAKLNE-----------------RDPMYSYWKESENRYVT-CRYSGKE 865
               L  DG   +GAK+ +                  + +   +K+ E  YV    +    
Sbjct: 984  ---LDGDGFPAIGAKIEKGNTYCRVQTSSSSSSFASNGIQHAYKDGETAYVDGVTFISPP 1040

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
            +   E  R++    +G       A +  R  R P +GDKFASR GQKGI S+ WP ED+P
Sbjct: 1041 DAAHE--RLAKSGLKGCR-----ASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMP 1093

Query: 926  FTDSGLVPDIVFNPHGFPSRMTIGFL 951
            FT+SGLVPDI+FNPHGFPSRMTIG L
Sbjct: 1094 FTESGLVPDILFNPHGFPSRMTIGML 1119



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + +GY YYGTE +YSGV G  + A IF G+++YQRLRHMV+DK Q +
Sbjct: 1195 MRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVR 1241


>gi|221481595|gb|EEE19977.1| DNA-directed RNA polymerase I, beta subunit, putative [Toxoplasma
           gondii GT1]
          Length = 1385

 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 193/687 (28%), Positives = 304/687 (44%), Gaps = 141/687 (20%)

Query: 71  PHIASFDFMLDEGLDLAVEDIA---------PIEFEI---YGKT--LKLNIVKAAISEP- 115
           PH+ SFD  L+  L   V+D+          P + E    Y  T  +KL I   +I  P 
Sbjct: 62  PHVRSFDSFLEVYLQEMVKDLPVVYVDPSYDPDKHEANPYYSPTDYIKLAISSVSIGAPV 121

Query: 116 -------KVPAGPVGIHFNKYY-PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV-- 165
                  ++  G  G   ++   P   R+    Y  P  V+   S D + G    KEV  
Sbjct: 122 RFDAAGARLQPGVGGSGDDQLLLPKHCREAHITYGAPLKVSFVRS-DRRDGAALKKEVVV 180

Query: 166 GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
           G  P+M++SK C  R ++PA+L   GE  D+ GGYFI+ G+E+++R ++  R N PIA+K
Sbjct: 181 GMAPLMVRSKLCSTRGMSPAELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALK 240

Query: 226 RNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNG--SARFMFSHRKSMC------- 276
           R A+ NR    +   V +RS + D ++T+N+L    +G  + R + + ++  C       
Sbjct: 241 RPAFANRDAFCTPYAVLLRSQRYDGTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLR 300

Query: 277 ------LLGMMQSLHEEGI---------------------HTQHDSKVF-------FGQI 302
                  L  +++   EG                       T  DS V         G +
Sbjct: 301 CLAGNLSLAQLKAKLLEGCWDDAADATARSQLVEELWGQEATFADSDVLENRPLHQLGLL 360

Query: 303 FKEKLQYDLRHLNEVEIC-DYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
           F + + + LR  +  E    Y++ + +LPHL  + +KF     M  KL  + QG +  +S
Sbjct: 361 FWKAVHWLLRPGSSYEAAGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAES 420

Query: 362 EDSIMLQEIMTGGSL-------------------YLQ---LLKKEKSGTSAVL---KESD 396
            DS   QE++  G +                   YLQ   +LK   +  +A +   K  D
Sbjct: 421 LDSFAYQEVVLPGQILASVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFD 480

Query: 397 IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
           +        I   ++ F+ATGN+   + + L L Q SG+ + A+ +N  R++SHFRAVHR
Sbjct: 481 LATDRCCPEIAQKLSYFMATGNI---RTTQLDLQQLSGWTVTADRLNVHRFLSHFRAVHR 537

Query: 457 GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ--------------- 501
           G +F  M+++  R+L  + WGF+CPVHTPDG PCGLL HLT +                 
Sbjct: 538 GQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIR 597

Query: 502 --------------ISEYIPSKVLAQI-----PSVLVSLGMLPLTPVIQSIPEQALMVML 542
                          S   PS V A       P+V    G++  T    + P     +++
Sbjct: 598 LFLHKHGVCVDLEGTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFP-----LVV 652

Query: 543 DGRIVGYILDQIATSLVPKLRMLKIV-GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           DG +V  +  +     +   R LK    E   +  E+V    P  G G    +++FT PG
Sbjct: 653 DGAVVCRLDRKDFAFWLETFRDLKSREAEDFKQHWEVVGF--PHNG-GNLESIFIFTFPG 709

Query: 602 RMLRPVMNLAAGNIEWIGTFEQVFMDI 628
           R++RPV ++ +G IE+IG   Q +  I
Sbjct: 710 RLVRPVRHIESGRIEYIGPLMQPWAAI 736



 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 169/326 (51%), Gaps = 58/326 (17%)

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            EL  + FLS  A+L P    NQSPRN+YQCQM KQTMGTP  +  ++   K YRL TP  
Sbjct: 831  ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 890

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  R   Y   D D++P G NA+VAV+ YTG+DMEDAMILNK S ERG  HGC++KS  I
Sbjct: 891  PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 950

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            +        G  + Y+            FG V+    +H+ +                  
Sbjct: 951  DAAPASARAGAASQYT------------FGNVNEFGRKHIAT------------------ 980

Query: 824  EDKLGPDGLVYVGAKLNE-----------------RDPMYSYWKESENRYVT-CRYSGKE 865
               L  DG   +GAK+ +                  + +   +K+ E  YV    +    
Sbjct: 981  ---LDGDGFPAIGAKIEKGNTYCRVQTSSSSSSFASNGIQHAYKDGETAYVDGVTFISPP 1037

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
            +   E  R++    +G       A +  R  R P +GDKFASR GQKGI S+ WP ED+P
Sbjct: 1038 DAAHE--RLAKSGLKGCR-----ASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMP 1090

Query: 926  FTDSGLVPDIVFNPHGFPSRMTIGFL 951
            FT+SGLVPDI+FNPHGFPSRMTIG L
Sbjct: 1091 FTESGLVPDILFNPHGFPSRMTIGML 1116



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + +GY YYGTE +YSGV G  + A IF G+++YQRLRHMV+DK Q +
Sbjct: 1192 MRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVR 1238


>gi|401398077|ref|XP_003880213.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
 gi|325114622|emb|CBZ50178.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
          Length = 1365

 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 183/658 (27%), Positives = 294/658 (44%), Gaps = 131/658 (19%)

Query: 84  LDLAVEDIA---PIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSV 140
           + LA+  ++   P+ F+  G   KL   + A ++                P   R+    
Sbjct: 107 IKLAISSVSLGTPVRFDTAGAAPKLGESRDACAD------------QLLLPRHCREAHIT 154

Query: 141 YSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWG 198
           Y  P  V    S + + G    K+V  G  P+M++SK C  R ++P +L   GE  D+ G
Sbjct: 155 YGAPLKVAFVRS-NNRDGSAVRKDVVVGMAPLMVRSKLCSTRGMSPEELQRAGEDVDDGG 213

Query: 199 GYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLH 258
           GYFI+ G+E+++R ++  R N PIA+KR A+ NR    +   V +RS + D ++T+N+L 
Sbjct: 214 GYFIINGNERVIRFVVQQRTNFPIALKRPAFANRDAFCTPYAVLLRSQRYDGTSTSNILL 273

Query: 259 FVTNG--SARFMFSHRKSMC----------------------LLGMMQSLHEEGIHTQ-- 292
              +G  + R + + ++  C                      L G      E    +Q  
Sbjct: 274 DTEDGRCTYRILLNRQEHFCSFFLLLRCLAGNLSLAQLKAKLLEGCWSDAAEATDRSQLV 333

Query: 293 ----------HDSKVF-------FGQIFKEKLQYDLRHLNEVEIC-DYMLTNCILPHLDD 334
                      DS V         G IF + + + LR  +  E    Y++ + +LPHLD+
Sbjct: 334 EQIWGQEPTFADSDVLENRPLHQLGLIFWKGVSWLLRPGSSYEAAGTYVIRHFVLPHLDN 393

Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------------------ 376
           + +KF     M  KL  + QG +  +S DS   QE++  G +                  
Sbjct: 394 WSEKFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLPGQILSSVLKDALFSCLAKIRL 453

Query: 377 -YLQLLKKEKSG----TSAVLKES--DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL 429
            YLQ ++  K+     TSA+      D+        I   ++ F+ATGN+   + + L L
Sbjct: 454 HYLQEIRMLKNSGNDPTSAIYSNKFFDLATDRCCPEIAQKLSYFMATGNI---RTTQLDL 510

Query: 430 MQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
            Q SG+ + A+ +N  R++SHFRAVHRG +F  M+++  R+L  + WGF+CPVHTPDG P
Sbjct: 511 QQLSGWTVTADRLNVHRFLSHFRAVHRGQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAP 570

Query: 490 CGLLNHLTTNCQISEYIPS-KVLAQIPSVLVSLGM---------LPLT------------ 527
           CGLL HLT +       P  + +A I   L   G+         LP +            
Sbjct: 571 CGLLLHLTQSAAPVALPPDRRAIASIRLFLHKQGVCVDLEGISGLPPSDLGASVRHASRP 630

Query: 528 PVIQSIP-----EQALM----------VMLDGRIVGYILDQIATSLVPKLRMLKI-VGEK 571
           P +Q  P     E+ L+          +++DG +V  +  +     + K R LK    E 
Sbjct: 631 PALQVGPGGGRKEETLVAAASSCGTFPLVVDGTVVCRLDRKDFACWLEKFRDLKSREAED 690

Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
             +  E+V    P  G G    +++FT PGR++RPV ++ +G IE+IG   Q +  I 
Sbjct: 691 FKQHWEVVGF--PHSG-GNLESIFIFTFPGRLVRPVRHIKSGRIEYIGPLMQPWAAIA 745



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/315 (42%), Positives = 169/315 (53%), Gaps = 36/315 (11%)

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            EL  + FLS  A+L P    NQSPRN+YQCQM KQTMGTP  +  Y+   K YRL TP  
Sbjct: 835  ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSVPYRHDNKAYRLITPQR 894

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  R   Y   D D++P G NA+VAV+ YTG+DMEDAMILNK S ERG  HGC++K+  +
Sbjct: 895  PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKTKVV 954

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
            +        G  + Y+           F  V  + R  +   D     D F   PA  A 
Sbjct: 955  DAAPASARAGAASQYT-----------FSNVNEFGRKHNATLD----ADGF---PAIGAK 996

Query: 824  EDKLGPDGLVYVGAKLNERDPMYS------YWKESENRYVT-CRYSGKEEMCVEVVRMSS 876
             DK    G  Y   + +     ++       +K+ E  YV    Y    +   E  R++ 
Sbjct: 997  IDK----GSTYCRVQTSSSSSSFANNGIQHAYKDGETAYVDGVTYISPPDSAHE--RLAK 1050

Query: 877  GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
               +G       A +  R  R P +GDKFASR GQKGI S+ WP ED+PFT+SGLVPDI+
Sbjct: 1051 LGLKGCR-----ASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLVPDIL 1105

Query: 937  FNPHGFPSRMTIGFL 951
            FNPHGFPSRMTIG L
Sbjct: 1106 FNPHGFPSRMTIGML 1120



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + +GY YYGTE +YSGV G  + A IF G+++YQRLRHMV+DK Q +
Sbjct: 1196 MRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVR 1242


>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
 gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
          Length = 1210

 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 237/909 (26%), Positives = 391/909 (43%), Gaps = 149/909 (16%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N +  ++   
Sbjct: 164  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYTL 223

Query: 191  GEHPDEWGGYFIVGGHEKLVRL---LINNR---RNHP--------IAIKRNAWKNRGLLF 236
             E P + GGYFIV G EK++ +   L  NR      P        +    +  K++  + 
Sbjct: 224  HECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYII 283

Query: 237  SDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE-------- 287
               G +Y+R      +  N+ +  V    A  + S ++ + L+  +   ++E        
Sbjct: 284  MKKGRIYLR-----HNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFEE 338

Query: 288  ----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
                 I+TQ  +  + G   +I ++   +     N V      +++ I+ H+     ++ 
Sbjct: 339  AVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFR 398

Query: 337  DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGT 388
             K L ++HM  ++         +D  D +  + +   G L    +  L KK     K   
Sbjct: 399  PKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNI 458

Query: 389  SAVLKES------DIY--AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
              VLK+       D Y   A   + I   M   +ATGN S  +      M+ +G   +  
Sbjct: 459  DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIATGNWSLKRFR----MERAG---VTH 511

Query: 441  NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------ 492
             ++R+ Y++    + R  S F++ R  S PR L+   +G +C   TP+G  CGL      
Sbjct: 512  VLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLAL 571

Query: 493  LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYI 550
            + H+TTN    E  P      +  ++ +LG   +  V   +   + A +V ++G  +   
Sbjct: 572  MTHITTN---DEEEP------VQKLVFTLGAEDIQTVGGRECFGQGAYIVFMNGSPIA-- 620

Query: 551  LDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN- 609
            L +     +   R L+ +G +I + +  V++   +K       +++ T  GR+ RP++  
Sbjct: 621  LTRRPKYFLNAFRRLRRMG-RISEFVS-VFINHNQKC------VHVSTDDGRICRPLIIV 672

Query: 610  -------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
                                     L+ G +E++   E+   +I +  +E     TTH E
Sbjct: 673  EKKRSRVTARHLSALRNGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHLE 731

Query: 645  LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
            +     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P
Sbjct: 732  IEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQKP 791

Query: 705  FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
              +    +  + D  P G NA+VAV+SY+GYD+EDA++LNK S +RGF    +F+     
Sbjct: 792  MVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSAN 851

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L+S  N  GT+    G       +    G++    L  +       + Y  ++  + AL 
Sbjct: 852  LKSYSN--GTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNALS 909

Query: 825  DKL-GPDG---LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
              + G D    + Y       + P YSY                    ++ V +S+  TE
Sbjct: 910  SGITGSDAGLPVKYNPTPQTYKLPDYSY--------------------IDKVMIST--TE 947

Query: 881  GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
            G S       +  R  R P VGDKF+SR GQKG+  +     D+PFTD+GLVPDI+ NPH
Sbjct: 948  GES---QLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPH 1004

Query: 941  GFPSRMTIG 949
            GFPSRMT+G
Sbjct: 1005 GFPSRMTVG 1013



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV 
Sbjct: 1030 FGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQ 1089

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1090 DKMHSRARGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1133

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  +C ++GY
Sbjct: 1134 QLLLERLMISSDRHE-VDVCESCGFMGY 1160


>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
           infestans T30-4]
 gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
           infestans T30-4]
          Length = 1202

 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 247/932 (26%), Positives = 385/932 (41%), Gaps = 159/932 (17%)

Query: 130 YPTEARQTRSVYSGPFNV-TVAWSWDGKAGGTFTKE--------------VGRVPIMLKS 174
           +P EAR     YS P  V  V   +   + G    E              +G VPIML+S
Sbjct: 117 FPHEARLRNLTYSAPLYVDVVCQKYQAPSSGPANLEDMEPYDQVETPKEFIGMVPIMLRS 176

Query: 175 KRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNA-----W 229
           + C L + T  +L E  E   + GGYFI+ G EK++        NH    ++NA     W
Sbjct: 177 QYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKNAASKYSW 236

Query: 230 KNRGLLFSDLGV------YIRSVKR---DESATNN---------------VLHFVTNG-- 263
                   + GV      Y++  ++     + T N               V+ F   G  
Sbjct: 237 VCETRSHVEHGVRPTSTMYVQMYQKGGGKSAITGNQIRAVIPYIRQDIPVVIIFRALGFV 296

Query: 264 SARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNE 316
           + R +  H   +C       L+   +S  EE    Q + +V    I +     ++   + 
Sbjct: 297 ADREILEH---ICYDFSDAELMERFKSSLEEAFVIQ-EQEVALDFIGRRGSAINVSKADR 352

Query: 317 VEICDYMLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI-M 371
           +     +L   +LPH+  +D+ +  K   L ++  KL     G +  D  D    + + +
Sbjct: 353 IRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDL 412

Query: 372 TG---GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSA 421
            G   G L+  L KK      + L       K+ ++  A R+ +I + +   LATGN   
Sbjct: 413 AGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGM 472

Query: 422 GKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
            K+++      +G   +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG 
Sbjct: 473 QKSAS-----KAG---VSQVLNRLTYASSLSHLRRLNT-PLGREGKQAQPRQLHNTHWGM 523

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL 538
           ICP  TP+G   GL+ +L     IS   P   + +      +  +  + P  Q IP  + 
Sbjct: 524 ICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKP--QIIP-HST 580

Query: 539 MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT 598
            + ++G  VG  + +    L+  LR L+   +   +   I  L   E        L ++T
Sbjct: 581 KIFVNGNWVG--VHREPNELIRTLRSLRRCVDIDAEVSVIRDLMNKE--------LRIYT 630

Query: 599 GPGRMLRP-----------------------VMN------LAAGNIEWIGTFEQVFMDIC 629
             GR+ RP                       + N      L  G +E I T E+    I 
Sbjct: 631 DAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIA 690

Query: 630 ITMKEAYPG--ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           +  K+   G  I TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  C N+
Sbjct: 691 MEPKDVGTGSQIHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYCSNF 750

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
           R +       L  P  P       + L     P G NAIV + SYTGY+ ED++I+N+S+
Sbjct: 751 RARMDTMANVLNYPQKPLVTTRAMEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSA 810

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            +RGF     F+S F      Y  Y  +       G             +++        
Sbjct: 811 IDRGF-----FRSTF------YRCYIDQERNKSPHGGPGGGAGGANCEEFEKPSRENCLG 859

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY---SYWKESENRYVTCRYSGK 864
            +   Y            KL  DGLV  G +++  D +    S   +SE+  +  R+  K
Sbjct: 860 LRHGSYH-----------KLDNDGLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQRHQ-K 907

Query: 865 EEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
            +    +    +G  +   +T N        + +R  R P +GDKFASR GQKG   + +
Sbjct: 908 RDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGTIGMTY 967

Query: 920 PAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             ED+PFT  G+ PDIV NPH  PSRMT+G L
Sbjct: 968 RQEDMPFTVEGITPDIVVNPHAIPSRMTVGHL 999



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY  +G E MYSG  G  + AQIF G   YQRL+HMV DK  ++
Sbjct: 1036 GYQKHGNEVMYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSR 1079


>gi|392587347|gb|EIW76681.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
           [Coniophora puteana RWD-64-598 SS2]
          Length = 1143

 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 229/902 (25%), Positives = 376/902 (41%), Gaps = 138/902 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  VT+ ++            +GR+PIML+S +C L   + AQL   
Sbjct: 107 PHECRLRDITYSAPILVTIQYTRGKNVVKRPNVNIGRLPIMLRSSKCILTGKSEAQLARM 166

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYF+V G EK++         R+++       +          G L S    
Sbjct: 167 TECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVETDPVKGVVQSSCTSSTHGGLKSK--T 224

Query: 242 YIRSVKRDESATNNVLH----FVTNGSARFMFSHRKSMCL---------LGMMQSLHEE- 287
           Y+ + K      +N +H     V    A  + S ++ + L         L    +L +  
Sbjct: 225 YVATKKGKIYLRHNSIHEDVPIVIALKALGIQSDKEILLLTAGNTEAYKLAFSANLEDAA 284

Query: 288 --GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
             G+ T+H +  + G   K   +         E     L   +L H+     D+  K + 
Sbjct: 285 RLGVFTRHQALEWIGTRVKVNRKVVGPRRPAWEEALEALATIVLAHVPVNGLDFRPKAIF 344

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVL 392
           ++ MT ++   +     +D  D +  + +   G L L LL ++         KS    VL
Sbjct: 345 VATMTRRVLMCMDDEKMVDDRDYVGNKRLELAGQL-LALLFEDLFKTFNTNLKSAIDKVL 403

Query: 393 K------ESDIYAA--FRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
           K      E D +    F+   I S     ++TGN S  +      M+ +G   +   ++R
Sbjct: 404 KKPSRTNEFDAFNTMQFQGDHITSGFVRAISTGNWSLKRFK----MERAG---VTHVLSR 456

Query: 445 MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           + ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I
Sbjct: 457 LSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 516

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +  +  + + +I + ++ +  + L    +       +V ++G I+G  L +  T  V   
Sbjct: 517 TTDVEEEPIIRI-AYMLGVEDISLASGTEIYGPHTFVVNVNGTIIG--LTRYPTRFVTNF 573

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG-----LYLFTGPGRMLRPVMNLAAGN--- 614
           R L+  G             R  + +G+Y       +++ +  GR+ RP++ +  G    
Sbjct: 574 RRLRRAG-------------RFSEFVGVYVNHHHRTVHIASDGGRICRPMIIVEDGRPRV 620

Query: 615 -----------------------IEWIGTFEQVFMDICITMKEA-YPGITTHRELSKTDF 650
                                  +E++   E+   D  I + E+     TTH E+     
Sbjct: 621 NSGHISLLKQGHLSFDDFLRQGLVEYLDVNEE--NDSYIALYESDIVATTTHLEIEPFTI 678

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY    P  P  +   
Sbjct: 679 LGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKT 738

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + +  D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    + +     +    N
Sbjct: 739 IELIGYDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPN 798

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF--GRDPANKALEDKLG 828
                   + +D +  Q Q  + ++    L   V ++    D +   + P N       G
Sbjct: 799 GTFDRLADAPLDDN-GQIQKKYDIIQLDGLAG-VGERVDPGDVYVNKQTPTNANDNTFTG 856

Query: 829 PDGLV-YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
               V Y  A L+ + P+  Y  +     +    +  ++  ++V+               
Sbjct: 857 QAAAVPYKNAPLSYKSPVAGYIDK-----LMVSDTENDQTLIKVL--------------- 896

Query: 888 CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
                 R  R P +GDKF+SR GQKG+C +    ED+PF D G+ PD + NPHGFPSRMT
Sbjct: 897 -----IRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMT 951

Query: 948 IG 949
           +G
Sbjct: 952 VG 953



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 745  KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            K  Y   F    +     I +E G++Y G + + SG+ G +++A ++FG ++YQ+L+HMV
Sbjct: 969  KLQYGTAFGGSKVEDMSRILIEHGFSYAGKDMLTSGITGELLEAYVYFGPIYYQKLKHMV 1028

Query: 805  SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
             DK   +    R    +   +    +G + +G    ERD +  Y
Sbjct: 1029 MDKMHARARGPRATLTRQPTEGRSREGGLRLGEM--ERDCLIGY 1070


>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
 gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
          Length = 1211

 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 247/970 (25%), Positives = 413/970 (42%), Gaps = 152/970 (15%)

Query: 72   HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPK-VPAGPVGIHFNKYY 130
            HI S+++ ++  L   V+  A I  +I  K   +      +  P+       GI  +   
Sbjct: 105  HIDSYNYFVEVQLKKIVQSSAEIRSDIDPK-FYIKFHDIYLGTPRRTDEEQSGIKVDSTI 163

Query: 131  -PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
             P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N +  ++  
Sbjct: 164  TPNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 223

Query: 190  RGEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPI-----AIKRNAWKNRGLL 235
              E P + GGYFIV G EK++         R+++       I         +  K++  +
Sbjct: 224  LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDSKKEIVQASVTSSSHERKSKSYI 283

Query: 236  FSDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE------- 287
                G +Y+R      +  N+ +  V    A  + S ++ + L+  +   ++E       
Sbjct: 284  IMKKGRIYLR-----HNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDLEYQEDFAINFE 338

Query: 288  -----GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DY 335
                 GI TQ  +  + G   +I ++   +     N V      +++ I+ H+     ++
Sbjct: 339  EAIKLGIFTQQQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNF 398

Query: 336  WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSG 387
              K L +++M  ++         +D  D +  + +   G L    +  L KK     K  
Sbjct: 399  RPKALYVTYMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMN 458

Query: 388  TSAVLKES------DIY--AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
               VLK+       D Y   A   + I   M   +ATGN S  +      M+ +G   + 
Sbjct: 459  IDKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIATGNWSLKRFR----MERAG---VT 511

Query: 440  ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL----- 492
              ++R+ Y++    + R  S F++ R  S PR L+   +G +C   TP+G  CGL     
Sbjct: 512  HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 571

Query: 493  -LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGY 549
             + H+TTN    E  P      +  ++ +LG   +  V   +   + A +V ++G  +  
Sbjct: 572  LMTHITTN---DEEEP------VQKLVFTLGAEDIQTVGGRECFGQGAYIVFMNGSPIA- 621

Query: 550  ILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN 609
             L +     +   R L+ +G +I + +  V++   +K       +++ T  GR+ RP++ 
Sbjct: 622  -LTRRPKYFLNAFRRLRRMG-RISEFVS-VFINHNQKS------VHVSTDDGRICRPLII 672

Query: 610  --------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
                                      L+ G +E++   E+   +I +  +E     TTH 
Sbjct: 673  VEKKRSKVTARHLSALRSGTMDFDDFLSNGLVEYVDVNEENDANIAVYEREIDAN-TTHL 731

Query: 644  ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
            E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 732  EIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVYPQK 791

Query: 704  PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
            P  +    +  + D  P G NA+VAV+SY+GYD+EDA++LNK S +RGF    +F+    
Sbjct: 792  PMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 851

Query: 764  ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
             L+S  N  GT+    G       +    G++    L  +       + Y  ++  + AL
Sbjct: 852  NLKSYSN--GTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVYINKETPDNAL 909

Query: 824  EDKL-GPDG---LVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
               + G D    + Y       + P YSY                    ++ V +S+  T
Sbjct: 910  SSGITGSDAGLPVKYNPTPQTYKLPDYSY--------------------IDKVMIST--T 947

Query: 880  EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            EG S       +  R  R P VGDKF+SR GQKG+  +     D+PFTD+GLVPDI+ NP
Sbjct: 948  EGES---QLIKVQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNP 1004

Query: 940  HGFPSRMTIG 949
            HGFPSRMT+G
Sbjct: 1005 HGFPSRMTVG 1014



 Score = 48.1 bits (113), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV 
Sbjct: 1031 FGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYYQKLKHMVQ 1090

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1091 DKMHSRARGPRATLTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1134

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V   C ++GY
Sbjct: 1135 QLLLERLMISSDRHE-VDVCEGCGFMGY 1161


>gi|195431078|ref|XP_002063575.1| GK21338 [Drosophila willistoni]
 gi|194159660|gb|EDW74561.1| GK21338 [Drosophila willistoni]
          Length = 999

 Score =  223 bits (568), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 227/873 (26%), Positives = 370/873 (42%), Gaps = 154/873 (17%)

Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL----------- 213
           +GR+P+ML+S  C L   T  +L +  E P + GGYF+V G EK++ +            
Sbjct: 3   IGRMPLMLRSSNCVLSGKTEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTE 62

Query: 214 -INNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
             N      +    +  K+R L+ S  G Y     +  S T+++   V    A  + S +
Sbjct: 63  DFNGVVQCQVTSSTHEKKSRTLVLSKHGRYYL---KHNSMTDDI-PIVVIFKALGIVSDQ 118

Query: 273 KSMCLLGM-MQSLHEEG----------IHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEIC 320
           + M  +G+  QS +  G          I TQ  +  + G ++  ++ Q         E  
Sbjct: 119 EIMSHIGVDPQSQNRFGASLLEAFNLKIFTQQRALDYMGSKLVVKRFQSATTKTPPEEAR 178

Query: 321 DYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL 376
           D ++T  IL H+     ++  K + ++ M  ++          D  D    + +   GSL
Sbjct: 179 DLLMTT-ILAHVPVDNFNFQMKAIYVALMVRRVMAAELDKTLFDDRDYYGNKRLELAGSL 237

Query: 377 ----YLQLLKK---------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGK 423
               +  L K+         +K+       + D+    RA+ I + + + +++GN +  +
Sbjct: 238 ISLMFEDLFKRMNWELKMIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKR 297

Query: 424 NSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICP 481
                 M+  G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP
Sbjct: 298 FK----MERGG---VTQVLSRLSYISALGMMTRVNSQFEKSRKVSGPRSLQPSQWGMLCP 350

Query: 482 VHTPDGTPCGLLNHLTTNCQISEYI---PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL 538
             TP+G  CGL+ +L     I+  +   P  +LA    V   +  +   P+         
Sbjct: 351 SDTPEGEACGLVKNLALMTHITTEVDEHPVMILAYNAGV-EDIREVSGNPINNP---HVF 406

Query: 539 MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPK--SLEIVYLKRPEKGMGLYPGLYL 596
           +V ++G ++G  L+     LV  +R ++  G +I    S+   Y +R          +++
Sbjct: 407 LVFINGNVLGLTLNH--KHLVKNMRYMRRKG-RIGSFVSIHTSYSQR---------CVFV 454

Query: 597 FTGPGRMLRPVMN--------------------------LAAGNIEWIGTFEQVFMDICI 630
            T  GR+ RP +                           L  G IE++   E+    I  
Sbjct: 455 HTDGGRLCRPYIIVEKCRPLVKQHHLDELQRGIRKFDDFLLDGLIEYLDVNEENDSFIAC 514

Query: 631 TMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ 690
             +   P  TTH E+     L   A L+P P  NQSPRN YQC MGKQ MG    N + +
Sbjct: 515 YEENINP-TTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNR 573

Query: 691 GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYER 750
               +Y L  P +P  +    +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +R
Sbjct: 574 IDSLMYNLVYPQAPMVKSKTIELTNFDKVPAGQNATVAVMSYSGYDIEDALILNKASIDR 633

Query: 751 GFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQT 810
           G+    ++K+    ++     Y  +T                    + R+   V D    
Sbjct: 634 GYGRCLVYKNSKCTVKR----YANQT--------------------FDRIMGPVKDALTN 669

Query: 811 KDYFGRDPANKALEDKLGPDGLVYVGAKLNER--------------DPMYSYWKESENRY 856
           K  F          D L  DG+V  G ++  +              +P+     +     
Sbjct: 670 KVIFK--------HDVLDTDGIVSPGEQVQNKQIMINKEMPAVTSINPLEGQSPQVPYTA 721

Query: 857 VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
           V   Y G E   VE V +S+   E   +      I  R  R P +GDKF+SR GQKG+  
Sbjct: 722 VPISYKGSEPSYVERVMVSANAEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTG 776

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +    ED+PF D G+ PD++ NPHGFPSRMT+G
Sbjct: 777 LIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVG 809



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 31/44 (70%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+HMV DK   +
Sbjct: 848 GFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHAR 891


>gi|336374505|gb|EGO02842.1| hypothetical protein SERLA73DRAFT_84701 [Serpula lacrymans var.
           lacrymans S7.3]
 gi|336387393|gb|EGO28538.1| hypothetical protein SERLADRAFT_359856 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 1162

 Score =  223 bits (567), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 225/901 (24%), Positives = 371/901 (41%), Gaps = 136/901 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  VT+ ++            +GR+PIML+S +C L     AQL   
Sbjct: 107 PHECRLRDITYSAPVVVTIQYTRGKSVVRRPNVNIGRLPIMLRSNKCILTGKNEAQLARM 166

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIAIKRNAWKNRGLLFSDLGV 241
            E P + GGYF+V G EK++         R+++       +          G L S    
Sbjct: 167 TECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVETDSVKGVVQASCTSSTHGGLKSK--T 224

Query: 242 YIRSVKRDESATNNVLH----FVTNGSARFMFSHRKSMCLLG------------MMQSLH 285
           Y+ + K      +N +H     V    A  + + ++ + L               ++   
Sbjct: 225 YVATKKGKIYLRHNSIHEDVPIVIALKALGIQADKEILLLTAGNTEAYKSAFSANLEEAA 284

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLC 341
           + G+ T H +  + G   K   +         E     L   +L H+     D   K + 
Sbjct: 285 KLGVFTHHQALEWIGTRVKVNRKVVGPRRPAWEEALEALATIVLAHVPVKGLDLRSKAIF 344

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVL 392
           ++ MT ++   +     +D  D +  + +   G L L LL ++         KS    VL
Sbjct: 345 VATMTRRVLMAMDDEKMVDDRDYVGNKRLELAGQL-LALLFEDLFKTFNSNLKSSIDKVL 403

Query: 393 K------ESDIYAA--FRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
           K      E D +    F+   I S     ++TGN S  +      M+ +G   +   ++R
Sbjct: 404 KKPSRTNEFDAFNTMQFQGDHITSGFIRAISTGNWSLKRFK----MERAG---VTHVLSR 456

Query: 445 MRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI 502
           + ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I
Sbjct: 457 LSFISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 516

Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
           +  +  + + ++ + ++ +  + L    +       +V ++G IVG  L +  T  V   
Sbjct: 517 TTDVEEEPIVRL-AFMLGVEDISLATGTEIYGPHTFVVNVNGTIVG--LTRYPTRFVSNF 573

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLY-----PGLYLFTGPGRMLRPVMNLAAGN--- 614
           R L+  G             R  + +G+Y       +++ +  GR+ RP++ + +G    
Sbjct: 574 RRLRRAG-------------RLSEFVGVYINHHHHAVHIASDGGRICRPMIIVESGRPRV 620

Query: 615 -----------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
                                  +E++   E+    I +   +  P  TTH E+     L
Sbjct: 621 TSDHIMLLKKGVATFDDFLRKGLVEYLDVNEENDSYIALYESDIVP-TTTHLEIEPFTLL 679

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
             +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY    P  P  +    
Sbjct: 680 GAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTI 739

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + +  D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    + +     +    N 
Sbjct: 740 ELIGYDRLPAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNG 799

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF--GRDPANKALEDKLGP 829
                  + +D +  Q Q  + +V    L   V ++    D +   + P N       G 
Sbjct: 800 TFDRLADAPLDEN-GQIQKKYDIVQLDGLAG-VGERVDPGDVYINKQTPTNANDNSFTGQ 857

Query: 830 DGLV-YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
              V Y  + +  + P+  Y  +     V    +  ++  ++V+                
Sbjct: 858 AAAVPYKNSPMTYKSPVAGYIDK-----VLVSDTENDQTLIKVL---------------- 896

Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
                R  R P +GDKF+SR GQKG+C +    ED+PF D G+ PD + NPHGFPSRMT+
Sbjct: 897 ----IRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTV 952

Query: 949 G 949
           G
Sbjct: 953 G 953



 Score = 44.7 bits (104), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 745  KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            K  Y   F    +     I +E G+NY G + + SG+ G  M+A ++FG ++YQ+L  +V
Sbjct: 969  KLQYGTAFGGSKVEDMSRILIEKGFNYAGKDMLTSGITGEPMEAYVYFGPIYYQKLSEIV 1028


>gi|323447819|gb|EGB03728.1| hypothetical protein AURANDRAFT_39265 [Aureococcus anophagefferens]
          Length = 1222

 Score =  223 bits (567), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 251/1031 (24%), Positives = 411/1031 (39%), Gaps = 222/1031 (21%)

Query: 65  LLTLGAPHIASFDFMLDEGLD--LAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPV 122
            L L   HIASFD+ ++  +   +A E    +  E+      L+     +  P +     
Sbjct: 25  FLRLMNQHIASFDYFIETEIKKVVAAEPNHTVRSEV-DPNFYLSYTDVYVGVPSIEED-- 81

Query: 123 GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
                   P E R     YS P  V V +    +   T    +GR+PIML+S +C L N 
Sbjct: 82  AFTSTAATPFECRLRDCTYSAPIFVDVRYRRGPQIVTTKRVPIGRIPIMLRSSQCVLHNK 141

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLI----------------NNR 217
           + +QL    E P + GGYF+V G EK++         R++I                + R
Sbjct: 142 SWSQLEALKECPHDPGGYFVVKGVEKVILMQEQLSKNRMIIELDAKGFVCATITSSTHER 201

Query: 218 RNH-PIAIKRNAWKNR-----GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSH 271
           ++   I +K     +R       L  D+ V +        +   +   V++   +     
Sbjct: 202 KSRCSIVVKPTTHGHRVYLKHNTLGDDIPVVVILKAMGMESDQEIAELVSSADLKI---- 257

Query: 272 RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEK-------------LQYDLRHLNEVE 318
             +   +  M+      + TQ  +  + GQ  + K             L +  R ++  +
Sbjct: 258 --ADIFVNSMEEPCAAHVKTQKQALEYVGQAIRAKQKAQSVDGSRSQYLPHSRRPVSIED 315

Query: 319 ICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
               +L + +L H+     D+  K   + H+T ++         LD +D    + +   G
Sbjct: 316 EAREVLAHVVLSHVPVEDYDFVAKRTYIGHVTRRVLAASLDNSLLDDKDYYGNKRLELAG 375

Query: 375 SLYLQLLKKE---------KSGTSAVLKESDIYAAF--------RASSIESAMTNFLATG 417
            L L LL ++         K     VL++ +  A F        R  +I     + ++TG
Sbjct: 376 QL-LSLLFEDLFKRFNADLKRSADLVLQKQNRTAVFDIVKSTVWRTDTISQGFVHAISTG 434

Query: 418 NVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMR-SSEPRQLRTDA 475
           N    +      M  +G   + + ++R+ Y+S    + R  S F++ R +S PR L+   
Sbjct: 435 NWVLKRFK----MDRAG---VTQVLSRLSYVSAIGMMTRVNSQFEKTRKTSGPRALQLSQ 487

Query: 476 WGFICPVHTPDGTPCG------LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV 529
           WG +CP  TP+G  CG      LL H+TT+ ++ +   S            LG+  L  +
Sbjct: 488 WGMLCPADTPEGETCGLVKNLALLAHVTTDAEVEKTKRS---------CFDLGVEQLGYL 538

Query: 530 ----IQSIPEQALMVMLDGRIVGYIL--DQIATSLVPKLRMLKIVGEKIPKSLEIVYLKR 583
               + S P  A +V L+G ++G      ++A  L   +R  K +GE +      VY   
Sbjct: 539 NGAELNSHP-GAYLVFLNGLVIGACRRPHKLARGL-RCMRRSKRIGEFVS-----VYTH- 590

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAG------------------------------ 613
                 ++  +Y+    GR+ RP++    G                              
Sbjct: 591 -----TVHRAIYVACDGGRVCRPLIIATHGHSRLTAAQLATAFAKTYPNSNSQSKNDGDP 645

Query: 614 -------NIEWIGTFEQV-------FMD--------ICITMKEAYPGITTHRELSKTDFL 651
                  + + +GT + +       ++D        I +  +E  P  T H E+     L
Sbjct: 646 NRLQSHASTQSVGTLDHLTTVGIIEYVDVNEENNCFIALDERELTPRHT-HVEIDPVTIL 704

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
             ++ L+  P  NQSPRN YQC MGKQ MG+   N   +    LY L  P  P  +    
Sbjct: 705 GIVSGLVAFPHHNQSPRNTYQCAMGKQAMGSVATNQYERMDSLLYSLVYPQKPMVKSRVL 764

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           D +  D  P G NA +AV+SY+GYD+EDA++LN++S +RGF    + K   + +    N 
Sbjct: 765 DLVHFDALPGGCNATLAVMSYSGYDIEDAIVLNRASLDRGFMRCLVIKRHQVSIRRYANG 824

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
               T         +Q  +F         R+   D                       DG
Sbjct: 825 ACDRTTGPPSIELFLQGYVF---------RYSALDN----------------------DG 853

Query: 832 LVYVGAKLNERDPMYSYWKESENR-------------YVTCRYSGKEEMCVEVVRMSSGF 878
           +  VG KL+++  M +     E+R             +V   Y       V+ V +++  
Sbjct: 854 ICRVGEKLHDQSIMINREMPVEDRDELTPALPGRVSAFVVLHYKSPAPSVVDRVLLTANE 913

Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
           T+   V      +  R  R P VGDKFASR GQKG+C      ED+PF+D+G+ PD++ N
Sbjct: 914 TDQFLVK-----VMVRQCRRPEVGDKFASRHGQKGVCGAIVSQEDMPFSDTGVCPDVIMN 968

Query: 939 PHGFPSRMTIG 949
           PHGFPSRMT+G
Sbjct: 969 PHGFPSRMTVG 979



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 2/100 (2%)

Query: 749  ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
            E+  +  C  ++    L+ G++Y G + +YSG+ G  ++  +F G V YQ+L+HMV DK 
Sbjct: 1004 EKTGSADCASEASCTLLKHGFSYIGKDMLYSGISGEPLRVYVFMGPVFYQKLKHMVMDKM 1063

Query: 809  QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    R    +   +    DG + +G    ERD + SY
Sbjct: 1064 HARARGPRAQLTRQPTEGRSRDGGLRLGEM--ERDCLISY 1101


>gi|325094900|gb|EGC48210.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
          Length = 1227

 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 242/928 (26%), Positives = 389/928 (41%), Gaps = 187/928 (20%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N + A++   
Sbjct: 181  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLL 240

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E P + GGYFIV G EK+            I ++    KNR ++ +DL   I       
Sbjct: 241  QECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDLKKEIVQASVTS 288

Query: 251  SAT------------------NNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE- 287
            S+                   +NVL      V    A  + S ++ + L+  + S  +E 
Sbjct: 289  SSNERKSKSYIILKKDRIYMRHNVLSEDVPIVILLKAMGIQSDKEMLLLVAGIDSTFQED 348

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                       GI TQH +  + G   +I ++   + +   N V+     +++ I+ H+ 
Sbjct: 349  FAINFEESVKLGICTQHQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVV 408

Query: 334  ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-- 383
                ++  K L ++HM  ++         +D  D +  + +   G L    +  L KK  
Sbjct: 409  VENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQ 468

Query: 384  --EKSGTSAVLKES------DIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K     VLK+       D Y   A   + I   M   ++TGN S  +      M+ +
Sbjct: 469  FDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMNRAISTGNWSLKRFR----MERA 524

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 525  G---VTHVLSRLSYIAALGMLTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 581

Query: 492  L------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
            L      + H+TTN +  E +   + A     + ++G   L        + A ++ L+G 
Sbjct: 582  LVKNLALMTHITTNDE-EEPVRKLIFALGAEDVQTVGGRELHG------QGAYIIFLNGS 634

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
             +   L +     +   R L+  G ++ + +  V++   +        +++ T  GR+ R
Sbjct: 635  PIA--LTRRPKFFLNSFRRLRRTG-RVSEFIS-VFINHHQNA------VHVATDDGRICR 684

Query: 606  PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            P++                           LA G +E++   E+    I +  +E     
Sbjct: 685  PLIIVEDGKSKVTNRHLRLLRNGTMEFDDFLAHGLVEYLDCNEENDSYIAV-YEEDITQS 743

Query: 640  TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY + 
Sbjct: 744  TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMV 803

Query: 700  TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
             P  P  +    + +  D  P G +A VAV+SY+GYD+EDA++LNK S +RGF    +F+
Sbjct: 804  YPQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFR 863

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
                 L+S  N  GT+                              DK +  D     P 
Sbjct: 864  KYSTNLKSYSN--GTK------------------------------DKLKGPDRENGVPI 891

Query: 820  NK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---VTCRYSGK----------- 864
             K AL D    DGL  VG K+N  + +Y      EN     +T   +G+           
Sbjct: 892  RKHALLDN---DGLAAVGEKVNYGE-VYINKVTPENALSSGITGSDAGRPIAYIPSPQTY 947

Query: 865  ---EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
               +   ++ V +S+   E   +      +  R  R P VGDKF+SR GQKG+  +    
Sbjct: 948  KLPDPSYIDKVMISATEAENQLIK-----VQTRQTRVPEVGDKFSSRHGQKGVVGIIAEH 1002

Query: 922  EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             D+PF+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 1003 ADMPFSDLGIVPDIIMNPHGFPSRMTVG 1030



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1047 FGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQ 1106

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1107 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1150

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  NC ++GY
Sbjct: 1151 QLLLERLMISSDRHE-VDVCENCGFMGY 1177


>gi|240276965|gb|EER40475.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
          Length = 1227

 Score =  222 bits (566), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 241/928 (25%), Positives = 389/928 (41%), Gaps = 187/928 (20%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N + A++   
Sbjct: 181  PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLL 240

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E P + GGYFIV G EK+            I ++    KNR ++ +DL   I       
Sbjct: 241  QECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDLKKEIVQASVTS 288

Query: 251  SAT------------------NNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE- 287
            S+                   +NVL      V    A  + S ++ + L+  + S  +E 
Sbjct: 289  SSNERKSKSYIILKKDRIYMRHNVLSEDVPIVILLKAMGIQSDKEMLLLVAGIDSTFQED 348

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                        I+TQH +  + G   +I ++   + +   N V+     +++ I+ H+ 
Sbjct: 349  FAINFEESVKLSIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVV 408

Query: 334  ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-- 383
                ++  K L ++HM  ++         +D  D +  + +   G L    +  L KK  
Sbjct: 409  VENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQ 468

Query: 384  --EKSGTSAVLKES------DIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K     VLK+       D Y   A   + I   M   ++TGN S  +      M+ +
Sbjct: 469  FDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMNRAISTGNWSLKRFR----MERA 524

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 525  G---VTHVLSRLSYIAALGMLTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 581

Query: 492  L------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGR 545
            L      + H+TTN +  E +   + A     + ++G   L        + A ++ L+G 
Sbjct: 582  LVKNLALMTHITTNDE-EEPVRKLIFALGAEDVQTVGGRELHG------QGAYIIFLNGS 634

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
             +   L +     +   R L+  G ++ + +  V++   +        +++ T  GR+ R
Sbjct: 635  PIA--LTRRPKFFLNSFRRLRRTG-RVSEFIS-VFINHHQNA------VHVATDDGRICR 684

Query: 606  PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            P++                           LA G +E++   E+    I +  +E     
Sbjct: 685  PLIIVEDGKSKVTNRHLRLLRNGTMEFDDFLAHGLVEYLDCNEENDSYIAV-YEEDITQS 743

Query: 640  TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY + 
Sbjct: 744  TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMV 803

Query: 700  TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
             P  P  +    + +  D  P G +A VAV+SY+GYD+EDA++LNK S +RGF    +F+
Sbjct: 804  YPQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFR 863

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
                 L+S  N  GT+                              DK +  D     P 
Sbjct: 864  KYSTNLKSYSN--GTK------------------------------DKLKGPDRENGVPI 891

Query: 820  NK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---VTCRYSGK----------- 864
             K AL D    DGL  VG K+N  + +Y      EN     +T   +G+           
Sbjct: 892  RKHALLDN---DGLAAVGEKVNYGE-VYINKVTPENALSSGITGSDAGRPIAYIPSPQTY 947

Query: 865  ---EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
               +   ++ V +S+   E   +      +  R  R P VGDKF+SR GQKG+  +    
Sbjct: 948  KLPDPSYIDKVMISATEAENQLIK-----VQTRQTRVPEVGDKFSSRHGQKGVVGIIAEH 1002

Query: 922  EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             D+PF+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 1003 ADMPFSDLGIVPDIIMNPHGFPSRMTVG 1030



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1047 FGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQ 1106

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1107 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1150

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  NC ++GY
Sbjct: 1151 QLLLERLMISSDRHE-VDVCENCGFMGY 1177


>gi|156059482|ref|XP_001595664.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980]
 gi|154701540|gb|EDO01279.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1230

 Score =  222 bits (565), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 256/1023 (25%), Positives = 415/1023 (40%), Gaps = 189/1023 (18%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
            K+LTD       DK N    FL   G    HI SF++ ++  +   V+    +  E+  K
Sbjct: 78   KSLTDP-ISTAKDKWNLVPAFLKVKGLVKQHIDSFNYFVEHEIKDIVKANKRVTSEVDPK 136

Query: 102  TLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
               L      + EP+          N+  P E R     Y+ P  V + +          
Sbjct: 137  -FWLEYTDIRVGEPERMDYDDRKPQNEITPNECRLRDMTYAAPIRVDIKYMRGRTIVARK 195

Query: 162  TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
               +GR+PIMLKS +C L      Q+    E   + GGYF+V G EK+            
Sbjct: 196  NIAIGRMPIMLKSSKCRLNGKNDRQMAHMNECALDPGGYFVVNGTEKV------------ 243

Query: 222  IAIKRNAWKNRGLLFSD--LGVYIRSVKRDESATNNVLHFVTNGSA-------------- 265
            I ++    KNR ++ +D   G+   SV R +  +   +  +T  S+              
Sbjct: 244  ILVQEQLSKNRVIIEADPKKGIVSASVTRSDCISRTSVSLLTLNSSTHERKSKSYVMLKK 303

Query: 266  -RFMFSHRK-------SMCLLGM-MQSLHEE-------------------------GIHT 291
             R    H          + L  M +QS HE                          G+HT
Sbjct: 304  ERISLQHNILQEALPIVIVLKAMGIQSDHELLLLVAGSDERYQDEFSVNFEEATKLGVHT 363

Query: 292  QHDSKVFFGQIFKEKLQYDL-----RHLNEVEICDYMLTNCILPHLD----DYWDKFLCL 342
            QH +  + G   K   +        +  N +      L N I+ H+     D+  K L +
Sbjct: 364  QHQALEYIGARVKMGSRARAPGGGPQRRNYIGDALEALANIIITHVPVVGLDFRPKALYI 423

Query: 343  SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKE 394
              M  ++   +     +D  D +  + +   G L    +  L KK     K     VLK+
Sbjct: 424  CFMVRRVLMAMVNPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLKMNIDKVLKK 483

Query: 395  SDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSH 450
             +    F A +   +  N++  G    +S G  S  +  M+ +G   +   ++R+ Y+S 
Sbjct: 484  PNRGMEFDAYNHMQSHGNYITIGMNRAISTGNWSLKRFKMERAGVTHV---LSRLSYISA 540

Query: 451  FRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS 508
               + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L     I+ Y   
Sbjct: 541  LGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTYDDE 600

Query: 509  KVLAQIPSVLVSLGMLPLTPVIQSIPEQ-ALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
            + + ++  VL +  ++ ++   + I E+ A ++ ++G  +   L +     +   R  + 
Sbjct: 601  EPVKKLTFVLGAEDIVSMSG--KEIYEKGAYVIFVNGTPLA--LTRQPKKFLNSFRKFRR 656

Query: 568  VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------------ 609
            +G +I + + I               +++ T  GR+ RP++                   
Sbjct: 657  MG-RISEYISIFINHHST-------SVHIATDEGRICRPLIIVENQKPKVTKRHLEELRK 708

Query: 610  --------LAAGNIEWIGTFEQVFMDICITMKEAYPG-ITTHRELSKTDFLSNLANLIPM 660
                    L  G +E++   E+   D  I ++E Y    TTH E+     L  +A LIP 
Sbjct: 709  GTMDFDDFLYKGLLEYVDCNEE--NDSNIAIRENYINEATTHLEIEPFTVLGAVAGLIPY 766

Query: 661  PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP 720
            P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    + +  D  P
Sbjct: 767  PHHNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELIKYDKLP 826

Query: 721  MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG 780
             G NA VAV+S++GYD+EDA++LNK+S +RGF    +F+    +L+   N          
Sbjct: 827  AGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYSTQLKKYPN---------- 876

Query: 781  VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK-- 838
                              R +  ++D+       G +    A    LG DG+  VG +  
Sbjct: 877  ------------------RSQDRIADRQ-----VGENGKPIAKHRILGVDGIAMVGERIN 913

Query: 839  -----LNERDP-------MYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
                 LN+  P       M + +  ++ +     Y   +   ++ V +S   TE  S   
Sbjct: 914  AGETYLNKESPSNPNSSGMGNDYGSNDMKPAPMGYKLHDYAYIDKVMLSQ--TENESTV- 970

Query: 887  NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
                +  R  R P +GDKF+SR GQKG+  +    ED+PF DSG+ PDI+ NPHGFPSRM
Sbjct: 971  --LKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRM 1028

Query: 947  TIG 949
            T+G
Sbjct: 1029 TVG 1031



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + + SG+ G  + A +FFG ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1065 ILIDKGFSYSGKDFVTSGITGESLPAYVFFGPIYYQKLKHMVQDKMHSRSRGPRAILTRQ 1124

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1125 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMLSSDAHE-V 1167

Query: 883  SVTPNCAYIGY 893
             +   C  +GY
Sbjct: 1168 DICETCGLMGY 1178


>gi|294883259|ref|XP_002770385.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239873951|gb|EER02692.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 299

 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/303 (42%), Positives = 171/303 (56%), Gaps = 24/303 (7%)

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI--PSKVLAQIPSVLVS 520
           M+++  R+L  + WGF+CPVHTPDGTPCGLLNHL   CQ    I  P  V+  +   L S
Sbjct: 1   MKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLAAPCQPVVRIASPEGVIPGLEEELAS 60

Query: 521 LGMLPLTPVIQSIPE----QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE--KIPK 574
           LG+  +     S       +   V LDGR++G +      ++  +LR LKI  +   +P 
Sbjct: 61  LGVQLVRSSKTSTANYGAGENAYVTLDGRVLGKVARSRLEAVAEELRRLKIDKDCPGVPA 120

Query: 575 SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT--- 631
            LEIV  + P      + GL+LFTGP RM+RPV +LA GN E +G  EQVF+ I  T   
Sbjct: 121 DLEIVACQTPAS----FEGLWLFTGPCRMVRPVRDLATGNEELVGPMEQVFLKIAATRED 176

Query: 632 ---------MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
                    + E  P   TH ELS    LS +A L P  + NQSPRNMYQCQM KQTM  
Sbjct: 177 LEASTKTSSVPENIPMKYTHIELSPISMLSVIAGLTPFSNHNQSPRNMYQCQMLKQTMAI 236

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
           P LN  Y+   K+Y++  P  P  R       + D  P GTNAIVAVI+++G+DMEDA+I
Sbjct: 237 PYLNHPYRTDNKVYKITYPQFPMVRTTVLSEANFDVKPAGTNAIVAVIAHSGFDMEDALI 296

Query: 743 LNK 745
           ++K
Sbjct: 297 ISK 299


>gi|164657975|ref|XP_001730113.1| hypothetical protein MGL_2495 [Malassezia globosa CBS 7966]
 gi|159104008|gb|EDP42899.1| hypothetical protein MGL_2495 [Malassezia globosa CBS 7966]
          Length = 517

 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/278 (44%), Positives = 160/278 (57%), Gaps = 24/278 (8%)

Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
           MGKQTMGTP      +   KLYRLQT  +P  RP  ++   MD+FP GTNAIVAVISYTG
Sbjct: 1   MGKQTMGTPSGAIARRTDNKLYRLQTGQTPIVRPSLHNKYAMDDFPNGTNAIVAVISYTG 60

Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
           YDMEDAMILNKS++ERGF +G ++KS  I L             S   G      + FG 
Sbjct: 61  YDMEDAMILNKSAHERGFGYGSVYKSEVIHLRD-MMGGAGSGSGSSRGGRAGALPVHFG- 118

Query: 795 VHYQRLRHMVSDKWQTKDYFGRD-PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
                              FG D  A+ A  ++L  DGL +VG  +    P+Y+ + E+ 
Sbjct: 119 -------------------FGPDIRADDARREQLDADGLPFVGTFMTRGTPLYACFNEAT 159

Query: 854 NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKG 913
            R +  RY G E   V+ VR+    ++ G        I +RI R+P +GDKF+SR GQKG
Sbjct: 160 GRTIVKRYKGDEAAYVDTVRVIG--SDAGDTECQHVQIMFRIPRSPVIGDKFSSRHGQKG 217

Query: 914 ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +CS KWPA D+PF++SG+ PD++ NPH FPSRMTIG L
Sbjct: 218 VCSQKWPAVDMPFSESGMQPDVIINPHAFPSRMTIGML 255



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           +GYNY G E MYSG+ G  ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 295 AGYNYMGNEPMYSGITGQELRADIYLGVVYYQRLRHMVNDKFQVR 339


>gi|198423468|ref|XP_002121670.1| PREDICTED: similar to polymerase (RNA) III (DNA directed)
           polypeptide B [Ciona intestinalis]
          Length = 1141

 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 229/916 (25%), Positives = 387/916 (42%), Gaps = 159/916 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS    V + ++   +        +GR+PIML+S  C L      +L + 
Sbjct: 100 PHECRLRDMTYSASITVDIEYTRGQQRIIRKALPIGRMPIMLRSSNCVLTGKNGVELAKM 159

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYF+  G EK+            I I+    KNR ++  D        + S 
Sbjct: 160 NECPYDPGGYFVCKGVEKV------------ILIQEQMSKNRMIVERDRKGFCSCSVHSS 207

Query: 247 KRDESATNNVL----HFVTNGSAR-------FMF------SHRKSMCLLGM--------- 280
             ++    NVL    HF    +A         +F      S +  M L+G          
Sbjct: 208 THEKKTRVNVLQKKGHFYLQQNALNEDMPICVIFKAMGVESEQSIMQLIGTEENVMSMFS 267

Query: 281 --MQSLHEEGIHTQ-HDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD---- 333
             ++  H+  + TQ   SK   G+I +++  +     ++ +     L   +L H+     
Sbjct: 268 PSLEDCHKLEVFTQLQASKYISGKIRRQRPVWGAARQSKTDETRDWLNTTLLAHIPVTDW 327

Query: 334 DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTS 389
           +Y  K + L+ M  ++     G +++D  D    + +   G L    +  L K+  S   
Sbjct: 328 NYHAKAVYLALMIRRIILTQLGYLEVDDRDYYGNKRMELAGGLISLLFEDLFKRFNSELK 387

Query: 390 AVLK---------ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
            +           + D+    R   I +++   +++GN    +      M+  G   + +
Sbjct: 388 KIADLTIPKPRAAQFDVVRHMRQDLITTSLVIAISSGNWIVKRFK----MERKG---VTQ 440

Query: 441 NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
            + R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L  
Sbjct: 441 VLTRLSYISALGMMTRIASQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLAL 500

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI-QSIPEQ-ALMVMLDGRIVGYILDQIAT 556
              I+  +  +  A++   L +LG+  +  +  + I  Q + +V L+G ++G + D +  
Sbjct: 501 MTHITVDVEEEPTARL---LFNLGVEDVYMLSGEEIHSQLSYIVFLNGLVLGVVRDPV-- 555

Query: 557 SLVPKLRMLK-------IVGEKIPKSLEIVY-------LKRP----EKGMGLYPGLYLFT 598
            LV  LR+++        +     ++   VY       L RP     KG  L    ++  
Sbjct: 556 HLVTTLRLMRRHGYLNDFISVSTNRAHRTVYVSSDGGRLCRPYIIVSKGKPLVTSHHI-E 614

Query: 599 GPGRMLRPVMN-LAAGNIEWIGTFEQVFMDICITMKEAY-PGITTHRELSKTDFLSNLAN 656
              R LR   + L +G +E++   E+   D  + + E+Y    +TH E+     L   A 
Sbjct: 615 ELKRGLRSFEDFLRSGLVEYLDVSEE--NDCFVALDESYITHKSTHLEIEPFTLLGVCAG 672

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y L  P +P  +    + ++ 
Sbjct: 673 LIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQQRIDTLMYLLVYPQAPLVKSRTIELINF 732

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           +  P G NAI+AV+SY+GYD+EDA++LN++S +RG+    ++++    L+     Y  +T
Sbjct: 733 EKLPAGQNAIIAVMSYSGYDIEDALVLNRASVDRGYGRCLVYRNQKCILKR----YANQT 788

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
            +  V G  + A+                          R+P  +     L  DG++  G
Sbjct: 789 -FDKVMGPALNAET-------------------------REPIWR--HQGLDADGIIMPG 820

Query: 837 AKLNERDPMYSYW---------------------KESENRYVTCRYSGKEEMCVEVVRMS 875
            K+  +  +                           +  +     Y G     +E V +S
Sbjct: 821 VKVESKQKIMCXLYXXXXXXXXXXXXXXXXXLQGPSTSYQETPISYRGPVGSTIEKVMVS 880

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
           S   E   +      I  R  R P +GDKF+SR GQKG+  +     D+PF   G+ PD+
Sbjct: 881 SNNEESSLIK-----ILLRQTRRPELGDKFSSRHGQKGVTGLIVQQADMPFNQDGICPDV 935

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPHG+PSRMT+G L
Sbjct: 936 IMNPHGYPSRMTVGKL 951



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
            ++GYNY G + + SG+ G   +A I+ G V+YQ+L+HMV DK   +    R    +   +
Sbjct: 986  DNGYNYVGKDCLTSGITGESFEAYIYQGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTE 1045

Query: 826  KLGPDGLVYVGAKLNERDPMYSY 848
                DG + +G    ERD +  Y
Sbjct: 1046 GRSHDGGLRLGEM--ERDCLIGY 1066


>gi|156087649|ref|XP_001611231.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
 gi|154798485|gb|EDO07663.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
          Length = 1171

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 233/942 (24%), Positives = 391/942 (41%), Gaps = 200/942 (21%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR-------NLT 183
           P   R     YS P  V V + ++G+   +   E+GR+P+ML+S  C L        N+ 
Sbjct: 114 PQLCRMRDITYSAPMYVDVEY-YNGEGVASKRVEIGRLPVMLRSCVCALSGGMRANGNVD 172

Query: 184 PAQLIER-GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN----------- 231
             +L  R GE P + GGYFI+ G EK++ L+        + ++ +  KN           
Sbjct: 173 NFELSSRLGECPYDPGGYFIIKGVEKVI-LMQEQLSKCRVIVETDVKKNICATVTSATAE 231

Query: 232 ----RGLLFSDLGVYIR-----------------SVKRDESATNNVLHFVTNGSARFMFS 270
                 +++ +  +Y+R                  V  DE     +   +    AR    
Sbjct: 232 SKSRTAVVYKNQKLYVRHNSFTDDVPLCIILKAMGVTTDEE----IAQLIGTAGAREYLP 287

Query: 271 HRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK-----------EKLQYDLRHLNEVEI 319
                 L   ++ L+ EGI+T+ D+ ++ G+  +            K +    + N +E 
Sbjct: 288 TGGDYIL--SIEDLYNEGINTRMDALLYVGRKVRPRPLAKGFFTSSKERLPKTNQNLIED 345

Query: 320 CDYMLTNCILPHL-----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
              +LT  +L H+      D+  K   L  M  ++  V  G   +D +D    + +   G
Sbjct: 346 THDILTRVLLSHIPMRNCRDFSGKIKSLCLMARRVLSVASGKEPMDDKDHYGNKRLELAG 405

Query: 375 SL-----------YLQLLKKEKSGT-------------SAVLKESDIYAAFRASSIESAM 410
            L           +L  LKK+   T                 K  D   +     I   M
Sbjct: 406 QLISILFEDLFKAFLGQLKKQIDATLTRHYEIVSNCHGGEQAKYPDCLVSLPTDIITRGM 465

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEP 468
              ++TGN +  +      ++ SG   +++ ++R+ Y+S    + +  S F++ R  S+P
Sbjct: 466 QATISTGNWNIKRFR----IERSG---VSQILSRLSYISCLGMMTKTNSQFEKGRKVSKP 518

Query: 469 RQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           R L+    G ICP  TP+G  CGL      +NH+TT+  I   +          +L  LG
Sbjct: 519 RALQPSQLGLICPCDTPEGESCGLVKNLSLMNHVTTDGDIERLV---------ELLYWLG 569

Query: 523 MLPLTPVIQSI---PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIV 579
           +     +        ++ + V L+G I+G  + Q    L+  +  L+  G KI   + + 
Sbjct: 570 VESADALSARDCFDDDRNVTVFLNGIIIG--VHQNGKQLIKDVVALRRRG-KISAFVSVF 626

Query: 580 --YLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL--------------------------A 611
             Y +R          +++ +  GR+ RP++ +                          A
Sbjct: 627 ENYQQRE---------VHISSDGGRLCRPLIVVENGKPLLTPKVLSQLVEGQIPLSKLFA 677

Query: 612 AGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMY 671
           +G +EWI   E+    I +   +  P  TTH E+S    L  +A LIP P+ NQSPRN Y
Sbjct: 678 SGVLEWIDVNEENNTLIVMRESDITPK-TTHLEISPMSMLGVVAGLIPFPNHNQSPRNTY 736

Query: 672 QCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
           QC MGKQ++G+   N   +    L+ +  P  P         ++ D  P G N IVAV+S
Sbjct: 737 QCAMGKQSIGSIGYNQLNRCDTILHLMVYPQRPLVTTKAIQLVNFDKLPAGQNVIVAVMS 796

Query: 732 YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
           Y GY++EDA+++NK+S ERGF+     + + +E+E                         
Sbjct: 797 YQGYEIEDAVVINKASSERGFSRCYSLRRVTVEIEK------------------------ 832

Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE 851
             + H       ++++ Q          N    D L  D ++ VG K+ + D +     +
Sbjct: 833 --LNHAAERPGGLNNRPQI--------TNVTPVDDLTGDSVIGVGQKVKKDDTLLKKLTQ 882

Query: 852 SEN---RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY-IGYRIQRNPTVGDKFAS 907
           +     +    +Y   +   V+ V   +   E      +  Y I  R  R P +GDK++S
Sbjct: 883 TSTGQIKVTDIKYQFNQPAYVDRVMCITTIAE------SVMYKIMLRQVRLPEIGDKYSS 936

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           R GQKG+  +    E+LPF++ G VPD++ NPHGFPSRMT+G
Sbjct: 937 RHGQKGVVGLIESQENLPFSEHGWVPDLIMNPHGFPSRMTVG 978



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++  G E +YSG+ G  ++  IF G ++YQ+L+HMVSDK   +    R    +   
Sbjct: 1014 IKKGFHPAGKEILYSGITGEPLETLIFTGPMYYQKLKHMVSDKIHARAVGPRQSLTRQPT 1073

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    DG + +G    ERD + +Y              G   + VE + +SS   +   V
Sbjct: 1074 EGRSKDGGLRLGEM--ERDCLIAY--------------GASGLLVERLMLSSDVFQ-MDV 1116

Query: 885  TPNCAYIGY 893
               C +IGY
Sbjct: 1117 CHQCGFIGY 1125


>gi|315426560|dbj|BAJ48190.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
           subterraneum]
 gi|343485294|dbj|BAJ50948.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
           subterraneum]
          Length = 1117

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 237/965 (24%), Positives = 393/965 (40%), Gaps = 155/965 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEP--KVPAGPVGIHFNKY 129
           H+ SF++ +  GL   V  ++  E +    T+ +   +  I  P  +    P   +    
Sbjct: 27  HLRSFNYFVKTGLQQLVNSMSDYEIKTKHGTVVVKFGQVTIDIPTKREIDAP---NPQPL 83

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPAQLI 188
           YP EAR     Y  P  + ++  +DGK         VG +P+M+KS  C L  +T  +L+
Sbjct: 84  YPWEARLRNLTYEAPIYIKMSIYFDGKPIAPPENVWVGNIPVMVKSDICPLSKMTHDELL 143

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNA----WKNRGLLFSDLGVYIR 244
             GE P + GGYFI+ G E+++  + +   N  I  K+        +  +L +  G  +R
Sbjct: 144 AHGEDPQDPGGYFIINGSERVIVGIEDLAPNRIIVTKKEGDSKPQYSAVILSAAHGRQVR 203

Query: 245 ---SVKRDESATNNVLHFVTNGSARFMFSH---RKSMCLLGMMQSLHE------------ 286
              S ++D               A  M       K   +  ++  L E            
Sbjct: 204 VEVSYRKDSPVKVYFSRIYKGVPAIIMLRALGLTKDQEIANLISPLKEVQELLEPSFREA 263

Query: 287 EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMT 346
           EG+ T   +  + G         + R     +I D M    +         K + L  M 
Sbjct: 264 EGVETVEQALDYIGSRIAFGYAEEYRLEKAEQIVDTMFMLHLGTTKAARMKKAVHLCEMI 323

Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSL--------YLQLLKKEKSGTSAVL---KES 395
            ++     G+ + D  D    + +    +L        +++LL+  +     ++   +  
Sbjct: 324 GRVLETSLGLREPDDRDHYANKRLKLESALLTELYRMAFVKLLRDLRYQLERIIPTRQPI 383

Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
            I    R   +   + + +ATGN   G+    QL+  +         N +  +SH R V 
Sbjct: 384 SISTYVRHGIVSEFVKHAMATGNWPGGRVGVTQLLNRT---------NYLATLSHLRRVQ 434

Query: 456 ----RGS-YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
               RG  +F      E R L    WG +CP  TP+G+  GL+ +L  + ++S     K 
Sbjct: 435 SPLSRGQPHF------EARDLHGTHWGRLCPCETPEGSNAGLVKNLALSAEVSFQANKK- 487

Query: 511 LAQIPSVLVSLGMLPLTPVI-QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK--- 566
             ++   L  L ++PL  +I +  P   + V +DG + GY  + +   LV +LR L+   
Sbjct: 488 --ELLDRLFQLNVIPLNEIIAKRRPPPNVKVFVDGVLEGYHSNGVM--LVNELRRLRREG 543

Query: 567 IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NIEWIG 619
           I+ + I  +L            G    + + T  GR+ RP++ +  G       ++E I 
Sbjct: 544 IISQNINVALYT---------YGHVQEVVINTDEGRIRRPLIVVQNGQPLLQRQHVELIK 594

Query: 620 TFEQVFMDICI----------TMKEAYPGIT--------THRELSKTDFLSNLANLIPMP 661
                F D+              + AY  I+        TH E+S    L   A+LIP  
Sbjct: 595 RKTSKFRDLVSLGIIEYLDAEEEENAYVAISPDKVTNEHTHLEISSFAMLGVTASLIPYA 654

Query: 662 DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           + NQSPRN+Y+  M KQ +G    N+  +   + + L  P  P       D + +D  P+
Sbjct: 655 EHNQSPRNVYEAAMAKQALGVFASNYALRTDSRSHLLVYPQRPIVTTRTADLIGIDKRPL 714

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
           G N +VA+++  GY+MEDA++LN+SS ERG   G        E+E+     G    +   
Sbjct: 715 GQNMVVAILTGKGYNMEDAVVLNRSSVERGL--GLSLSWRIYEVEARQTPGGQRDKFGIP 772

Query: 782 DGSMM--QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL 839
           + S+   + + F+ V+      H+ SD        G     + LE+              
Sbjct: 773 EPSVRGYRGEQFYRVLDKDGFAHIESDVSGGTVIVGMMSPPRFLEE-------------- 818

Query: 840 NERDPMYS-YWKES------------ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
            +R P     W++S            EN ++T    G   + V+    S+ FTE      
Sbjct: 819 YQRVPTREMVWRDSSETVQPSETGNVENIFITINAEGN--LLVKAKVRSTCFTE------ 870

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
                         +GDKF+SR GQKG+  +  P ED+P+T  G+VPD++ NPH FPSRM
Sbjct: 871 --------------IGDKFSSRHGQKGVVGMLIPQEDMPYTKDGIVPDLLINPHAFPSRM 916

Query: 947 TIGFL 951
           TIG L
Sbjct: 917 TIGQL 921



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 755  GCIFKSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G   + +  ELE+ G+   G E +Y+G  G +++A++F GVV+YQRL H+V DK   +
Sbjct: 944  GKSLEELRAELEALGFKSSGRELLYNGATGKILEAEVFIGVVYYQRLHHLVRDKIHAR 1001


>gi|193787264|dbj|BAG52470.1| unnamed protein product [Homo sapiens]
          Length = 838

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 178/589 (30%), Positives = 269/589 (45%), Gaps = 79/589 (13%)

Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
           D+    R   I + M N ++TGN S  +      M   G   + + ++R+ Y+S    + 
Sbjct: 106 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMT 158

Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
           R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +    + +
Sbjct: 159 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVK 218

Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG---E 570
           + S L    +  L     S P    +V L+G I+G I D     LV   R+++  G   E
Sbjct: 219 LASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLVNTFRLMRRAGYINE 275

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAAGN- 614
            +  S  +               +Y+ +  GR+ RP +                LA G  
Sbjct: 276 FVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYR 324

Query: 615 ----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
                     +E++   E+   +I +  +      TTH E+     L   A LIP P  N
Sbjct: 325 NFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHN 383

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +    + ++ +  P G N
Sbjct: 384 QSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQN 443

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
           A VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+     Y  +T +  V G 
Sbjct: 444 ATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGP 498

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDP 844
           M+ A     +  ++ L           D  G     + +E+K     LV        + P
Sbjct: 499 MLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---QVLVNKSMPTVTQIP 544

Query: 845 MYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
           +       + +Y  V   Y G  +  +E V +SS   +   +      +  R  R P +G
Sbjct: 545 LEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIG 599

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 600 DKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 648



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 685 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 744

Query: 828 GPDGLVYVGAKLNERDPMYSY 848
             DG + +G    ERD +  Y
Sbjct: 745 SRDGGLRLGEM--ERDCLIGY 763


>gi|148689460|gb|EDL21407.1| polymerase (RNA) III (DNA directed) polypeptide B [Mus musculus]
          Length = 1102

 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 233/880 (26%), Positives = 371/880 (42%), Gaps = 158/880 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 140 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 199

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 200 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 247

Query: 247 KRDESATNNVLHFVTNGSARFMFSHR---KSMCLLGMMQSLHEEG-------IHTQHDSK 296
             ++ +  N+   V  G  RF   H    + + ++ + +++  E        I T+    
Sbjct: 248 THEKKSRTNMA--VKQG--RFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVM 303

Query: 297 VFFG---------QIFKEKLQYDLRHLNEVEICDY---MLTNCILPHLDDYWDKFLCLSH 344
             FG         QIF    Q  ++  N    C Y   M+   IL   D+  D      +
Sbjct: 304 AAFGPSLEECQKAQIFT---QMQVKEFNFRAKCIYTAVMVRRVILAQGDNKVDD---RDY 357

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTG-GSLYLQLLKKEKSGTSAVLKESDIYAAFRA 403
              K   +   ++ L  ED  + ++  +    +  Q++ K+++       + D+    R 
Sbjct: 358 YGNKRLELAGQLLSLLFED--LFKKFNSEMKKIADQVIPKQRAA------QFDVVKHMRQ 409

Query: 404 SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQE 462
             I + M N ++TGN S  +      M   G   + + ++R+ Y+S    + R  S F++
Sbjct: 410 DQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMTRISSQFEK 462

Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
            R +                       CGL+ +L     I+  +    + ++   L    
Sbjct: 463 TRKA-----------------------CGLVKNLALMTHITTDMEDGPIIKLAGNLGVED 499

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG---EKIPKSLEIV 579
           +  L     S P    +V L+G I+G I D     LV   R+++  G   E +  S  + 
Sbjct: 500 VNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLVSTFRLMRRAGYINEFVSISTNLT 556

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAAGN---------- 614
                         +Y+ +  GR+ RP +                LA G           
Sbjct: 557 DR-----------CVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHES 605

Query: 615 -IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            +E++   E+   +I +  +      TTH E+     L   A LIP P  NQSPRN YQC
Sbjct: 606 LVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC 664

Query: 674 QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
            MGKQ MGT   N R +    +Y L  P  P  +    + +D +  P G NA VAV+SY+
Sbjct: 665 AMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYS 724

Query: 734 GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG 793
           GYD+EDA++LNK+S +RGF    ++K+    L+     Y  +T +  V G M+ A     
Sbjct: 725 GYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGPMLDAATRKP 779

Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
           +  ++ L           D  G     + +E+K     LV        + P+       +
Sbjct: 780 IWRHEIL-----------DADGICSPGEKVENK---QVLVNKSMPTVTQIPLEGSNVPQQ 825

Query: 854 NRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
            +Y  V   Y G  +  +E V +SS   +   +      +  R  R P +GDKF+SR GQ
Sbjct: 826 PQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRHGQ 880

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+ +L
Sbjct: 881 KGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVSYL 920



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 949  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1008

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1009 SRDGGLRLGEM--ERDCLIGY 1027


>gi|303391303|ref|XP_003073881.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303303030|gb|ADM12521.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 1110

 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 254/995 (25%), Positives = 407/995 (40%), Gaps = 211/995 (21%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+D+ +D  +   V     ++ +I   T  L  +   +  P +    V       +P
Sbjct: 23  HIESYDYFVDHEIKALVRANQIVDSDI-DHTFYLKYLDIRVGMPSIEENMVNYDV---FP 78

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR---------NL 182
            E R     YS    V + +  + +        +G++P+ML+S RCHLR         N 
Sbjct: 79  IECRLRDMTYSANIYVDIEYVRNRQIIVKRDICIGKMPVMLRSSRCHLRKEAKGIIESNK 138

Query: 183 TPAQLI-ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD--- 238
           T  + I E  E P + GGYFI+ G E++            I I+    KNR ++ S    
Sbjct: 139 TRDRKIRESQECPLDVGGYFIIRGIERV------------ILIQEQLSKNRIIIESGPKG 186

Query: 239 -LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK----SMCLLGMMQSLH-EEGIHTQ 292
                  S    +S T+  +          MF+       +M  LG+ Q     E I  +
Sbjct: 187 LFASVTSSTDEHKSKTSVTIKDDCYYLKSSMFNEEIPAIIAMKALGLTQDKEIAECIGKE 246

Query: 293 HDSKVF--FGQ-IFKEKLQYDLRHL------------NEVEICDYMLTNCILPHLD---- 333
           +   +   FG+ I KE    D   L            N +E    +L+  +LP++     
Sbjct: 247 YFEIIVPSFGECISKEVFTKDQALLYMSNYIKLKPEDNRIEEVLTILSEKVLPNVQTEGC 306

Query: 334 DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK---------E 384
           +   K + ++ M  +L      +++ D +D +  +     G L   L +          +
Sbjct: 307 NLRKKGIYIALMIRRLVQTKLNILKEDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELK 366

Query: 385 KSGTSAVLKESD-------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
           KS    + K S         +   +A+ I S ++  ++TGN +  +      M+ SG   
Sbjct: 367 KSIDKILSKRSRAQEFDALTFLNLQANMITSTLSRAISTGNWNLKRFR----MERSG--- 419

Query: 438 MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           +   ++R  Y+S    + +  S+F++ R  S PR L T +WG +CPV TP+G  CGL+ +
Sbjct: 420 VTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKN 479

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM--VMLDGRIVGYILDQ 553
           L    +I+    ++    +  ++  LG++ +  V      Q  M  V L+G IVG  +  
Sbjct: 480 LALLAEITTNSDTR---PVLDLMFRLGVVDINSVYTREIHQKDMFSVFLNGDIVG--ITN 534

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
            A  L+ + R+ +  G  I K + I Y    EK       +++ +  GR+ RP++ +  G
Sbjct: 535 KAGFLIEQFRLNRRKG-LIGKFVSI-YRVPAEKV------IHVASDNGRVCRPLVVIDKG 586

Query: 614 NIEWIGTFEQV--------------------FMDICITMK-------------------- 633
            I  +    QV                    F D  +  K                    
Sbjct: 587 RINQMIISNQVDKYLEALNISEKIEMGSERSFFDCYLKYKSFSDLLEEGFVEYLDVNEEN 646

Query: 634 --------EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
                   E     TTH E+S+   L  +A L+P P  NQSPRN YQC MGKQ +G   L
Sbjct: 647 DCLVALRPEDIVEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHISL 706

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N + +    + +L     P       D ++ +  P G NA+VAV+SY+GYD+EDA++LNK
Sbjct: 707 NVKKRFDPVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVLNK 766

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           +S ERG     ++K++   L+   N                                   
Sbjct: 767 TSIERGLFRVEVYKTITTLLKKHSN----------------------------------- 791

Query: 806 DKWQTKDYFGRDPANKALED-------KLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
                 D  G +P    L+D       K+  DG VYV    N+  P+   +K        
Sbjct: 792 ---GLSDILGPNPKESVLDDDGLGKPGKMIRDGTVYV----NKMSPVEGVYK-------- 836

Query: 859 CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI----GYRIQRNPTVGDKFASRAGQKGI 914
             ++GK      V R    + +   +T +   I      R  R P +GDKF+SR GQKG+
Sbjct: 837 --FTGK------VHRGDPAYIDKVLITKSQDQILIKTMLRQTRPPEIGDKFSSRHGQKGV 888

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             +    ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 889 VGLIVGQEDMPFNDQGISPDIIMNPHGFPSRMTVG 923



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 17/144 (11%)

Query: 751  GFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQT 810
             F    + ++  +  + G++Y G +   SG  G+ + A IFFG V YQRL+HMV+DK   
Sbjct: 945  AFKENSVEQTCELLAKHGFSYSGKDCFTSGTTGAPLTAYIFFGPVFYQRLKHMVADKIHM 1004

Query: 811  KDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVE 870
            +    R    +   +    DG + +G    ERD +  Y              G   + +E
Sbjct: 1005 RARGPRAILTRQPTEGRSKDGGLKLGEM--ERDCLIGY--------------GASSLIIE 1048

Query: 871  VVRMSSGFTEGGSVTPNCAYIGYR 894
             + +SS   E     P C  + ++
Sbjct: 1049 RLMISSDMFEAYVCKP-CGVLAFK 1071


>gi|79529842|ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
 gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
          Length = 1161

 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 259/1012 (25%), Positives = 416/1012 (41%), Gaps = 166/1012 (16%)

Query: 36  LNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLG--APHIASFDFMLDEGLDLAVEDIAP 93
           +++  LSAP +K+  DK F   P    EFL   G    H+ SF++ ++ G+   V+  + 
Sbjct: 17  IDKEKLSAP-IKSTADK-FQLVP----EFLKVRGLVKQHLDSFNYFINVGIHKIVKANSR 70

Query: 94  IEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW 153
           I   +   ++ L   K  + EP +       + N   P   R     Y+ P  V + +  
Sbjct: 71  ITSTV-DPSIYLRFKKVRVGEPSIINVNTVENIN---PHMCRLADMTYAAPIFVNIEYVH 126

Query: 154 DGKAGGTFTKE----VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
                   + +    +GR+PIML+S RC L      +L   GE P + GGYFI+ G EK+
Sbjct: 127 GSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKV 186

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIR-SVKRDESATNNVLHFVTNGSARFM 268
                       + I+    KNR ++ SD    I  SV      T +           ++
Sbjct: 187 ------------LLIQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYL 234

Query: 269 FSHR-----------KSM--------------------CLLGMMQSLHEEGIHTQHDSKV 297
           F HR           K+M                     LL  ++    EG++TQ  +  
Sbjct: 235 FLHRFVKKIPIIIVLKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALD 294

Query: 298 FFGQIFKEKLQY------DLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFH 351
           +     K K+ Y      D R L+ +   D  L +  +P  +++  K   +  M  ++  
Sbjct: 295 YLEAKVK-KISYGTPPEKDGRALSILR--DLFLAHVPVPD-NNFRQKCFYVGVMLRRMIE 350

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--KSGTSAVLKESD--IYAAFRASSIE 407
            +     +D +D +  + +   G L + LL ++  K+  S  +K  D  +    RAS  +
Sbjct: 351 AMLNKDAMDDKDYVGNKRLELSGQL-ISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFD 409

Query: 408 -SAMTNFLATGNVSAGKNSTLQL---------MQASGFVIMAENINRMRYMSHFRAVHRG 457
            S   N  +  ++S G   TL           M   G   M + + R+ ++     + + 
Sbjct: 410 FSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMHRKG---MTQVLTRLSFIGSMGFITKI 466

Query: 458 S-YFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP 515
           S  F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     ++       L  + 
Sbjct: 467 SPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMC 526

Query: 516 SVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATSLVPKLRMLKIVGEKIP- 573
             L    +  L+      P+ + +V+L+G I+G +   Q   + + +LR    +GE +  
Sbjct: 527 YKLGVTDLEVLSAEELHTPD-SFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSV 585

Query: 574 ---KSLEIVYLK-------RP----EKGMG---------LYPGLYLFTGPGR-MLRPVMN 609
              +    VY+        RP    +KG+          L  G+  F    R  L   ++
Sbjct: 586 FTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLD 645

Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRN 669
           +   N   I  +E           EA    TTH E+     L  +A LIP P  NQSPRN
Sbjct: 646 VNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRN 705

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
            YQC MGKQ MG    N   +    LY L  P  P       + +  D    G NA VAV
Sbjct: 706 TYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 765

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY----SGVDGSM 785
           +S++GYD+EDA+++NKSS +RGF   CI     + +   Y+    + +     +G D   
Sbjct: 766 MSFSGYDIEDAIVMNKSSLDRGFGR-CIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEK 824

Query: 786 MQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD-- 843
           MQ               +  D   T     R P +  +  ++  D +    + L++    
Sbjct: 825 MQI--------------LDDDGLATPGEIIR-PNDIYINKQVPVDTVTKFTSALSDSQYR 869

Query: 844 PMYSYWKESE------NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQR 897
           P   Y+K  E      +R   C    K ++C++ +                     R  R
Sbjct: 870 PAREYFKGPEGETQVVDRVALCS-DKKGQLCIKYI--------------------IRHTR 908

Query: 898 NPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
            P +GDKF+SR GQKG+C +    ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 909 RPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVG 960



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +E G++Y G + +YSG+ G  ++A IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1001 VEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPT 1060

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    +G + VG    ERD + +Y
Sbjct: 1061 EGKSKNGGLRVGEM--ERDCLIAY 1082


>gi|82594366|ref|XP_725394.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
            17XNL]
 gi|23480386|gb|EAA16959.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii yoelii]
          Length = 1470

 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 183/347 (52%), Gaps = 61/347 (17%)

Query: 617  WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
            +I + E + +DI     E  P    + EL +T FLS LA+L P  D NQSPRN+YQCQM 
Sbjct: 908  YIDSDENLNIDIY----EQIPQKFEYMELKQTSFLSFLASLTPFSDHNQSPRNIYQCQML 963

Query: 677  KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
            KQTMG   LN  Y    K+YR+ TP  P      Y+   +DNFP GTNA+VA+++YTGYD
Sbjct: 964  KQTMGIQSLNMFYTFTNKIYRIITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYD 1023

Query: 737  MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
            MEDA+I+NK+S +RG     I+K+  I+L      Y          G+ ++  I      
Sbjct: 1024 MEDALIINKASSDRGMFRTHIYKTEVIDL------YKKTNSPDFALGNNVRYTI------ 1071

Query: 797  YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY-------- 848
                 + +  K   ++Y GR          L  DGL  +  K+ E +P+YSY        
Sbjct: 1072 -----NSLPTKNNPREYKGR---------FLNKDGLPCINQKILENNPLYSYINKKNELT 1117

Query: 849  ----WKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
                +K   + YV C  + +    V ++R+                   R  R P VGDK
Sbjct: 1118 TYEVFKTHGDYYVDCVSNSQSNNQVAIIRL-------------------RTTRPPLVGDK 1158

Query: 905  FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            FASR GQKG+ S  +P ED+PF++SG+VPD++FNPHG PSRMTIG L
Sbjct: 1159 FASRHGQKGVVSRLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGML 1205



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/317 (30%), Positives = 165/317 (52%), Gaps = 25/317 (7%)

Query: 358 QLDSEDSIMLQEIMTGGSLYLQLL-KKEKSGTSA------VLKESDIYAA-FRASSIES- 408
           +L SE+  M+ +  +  +L L  + +KEK  T+       +  +S ++    R   + S 
Sbjct: 512 ELTSENDNMISKRDSTKNLRLMFMNEKEKLFTNVDGYLREIFSDSRLFIENTRTFGVASF 571

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP 468
           A++    TGN+S+     +   Q SG+VI+A+ IN +R +++FRA+HRGS+FQ+++   P
Sbjct: 572 AISYLFKTGNISS---DYIHYQQKSGWVILADEINNLRLLTNFRAIHRGSFFQDVKVLSP 628

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC---QISEYIPSKVLAQIPSVLVSLGM-- 523
           R+L  ++WGFICPVHTPDG+PCGLLNHL+  C    ++   P K    I   L  +G+  
Sbjct: 629 RKLLGESWGFICPVHTPDGSPCGLLNHLSQYCCIHNVASNEPHKF--NIKMYLKKIGINV 686

Query: 524 -LPLTPVIQSIPE-QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKS-LEIVY 580
            L  T  I ++ E Q + +++D   + YI +      V KL+  K       KS  EI+ 
Sbjct: 687 NLDETSGIHTVYENQTIPIIVDSVPITYISENDFKRTVYKLKYAKNHNLYNLKSHFEIIA 746

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
               +    L   + + T  GR++RP++NL    IE+I    Q ++ I +   +      
Sbjct: 747 HLNEQ---SLMDSITIHTCTGRIIRPILNLKMKCIEFISPGYQPYVSIAVNYDDILKNNL 803

Query: 641 THRELSKTDFLSNLANL 657
             + L K + + NL ++
Sbjct: 804 ARKILKKKENMVNLNSI 820



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L  GY+YYGTE +YSG+ G  +QA IFFGV++YQRLRHM  DK Q +
Sbjct: 1289 LNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVR 1335



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 121/296 (40%), Gaps = 55/296 (18%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
           YP   +   S Y G   V +   +  +   T T   G +PIM+ S  C+L+NL   +L++
Sbjct: 162 YPYLCKLACSTYEGEVLVVINKQYKNEIVRT-TVSTGFIPIMVLSDLCNLKNLNKKELVQ 220

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
           +GE     GG+FIV GH K++R +        I  K NA     LL  +  V+I  +  D
Sbjct: 221 KGEDESILGGFFIVSGHLKIIRYV--------ICPKYNAI----LLNEENKVHINCLLSD 268

Query: 250 ESATNNVLHFVTNGSARFMFSHRKS----------MCLLGMMQSLH-----EEGIHTQHD 294
            S   N L ++ N    ++   + S          +CL  + +  +     + GI  ++ 
Sbjct: 269 NSVFINSLSYLNNYEYEYLSRFQGSFIRIAFNVLILCLSPIKKKSYIYNKIKLGIKNENA 328

Query: 295 SK--------VFFGQIFKEKL---QYDLRHL----------------NEVEICDYMLTNC 327
            K        +F      EK    +Y+L++L                N  +    ++  C
Sbjct: 329 IKYIENYINSIFLKNDINEKEVFDKYNLKYLGKYANTSRTIFRYYDGNNYKKGKNVVKYC 388

Query: 328 ILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK 383
           +LPHL    +KF  +  M  +L      ++   ++DS+    + T   L   +LK+
Sbjct: 389 VLPHLQSNSEKFETICLMFKQLVLSKFKLINTVNKDSLEYHSVTTCSGLLSNILKE 444


>gi|10963|emb|CAA41631.1| DNA-directed RNA polymerase [Drosophila melanogaster]
          Length = 1135

 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 234/913 (25%), Positives = 381/913 (41%), Gaps = 168/913 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R   + YS P  V + ++   +        +GR+P+ML+S  C L   +  +L + 
Sbjct: 107 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRSN-CALTGKSEFELSKL 165

Query: 191 GEHPDEWGGYFIVGGHEKLVRLL------------INNRRNHPIAIKRNAWKNRGLLFSD 238
            E P + GGYF+V G EK++ +              N      +    +  K+R L+ S 
Sbjct: 166 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 225

Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM---MQSLHEEGIHTQHDS 295
            G Y     +  S T+++   V    A  + S ++   L+G+    Q+     +   ++ 
Sbjct: 226 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNL 281

Query: 296 KVFFGQ---------IFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY--WDKFLCL 342
           KVF  Q         +  ++ Q         E  + +LT  IL H+  D++    K + +
Sbjct: 282 KVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTT-ILAHVPVDNFNLQMKAIYV 340

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
           S M  ++          D  D    + +   GSL    +  L K+         +K+   
Sbjct: 341 SMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK 400

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
               + D+    RA+ I + + + +++GN +  +      M+ +G   + + ++R+ Y+S
Sbjct: 401 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 453

Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
               + R  S F++ R  S PR L+   WG +CP +TP+G  CGL+ +L     I+  + 
Sbjct: 454 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSYTPEGEACGLVKNLALMTHITTEVE 513

Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSL 558
            +     P ++V+         ++ I E            +V ++G ++G  L+     L
Sbjct: 514 ER-----PVMIVAF-----NAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHL 561

Query: 559 VPKLRMLKIVGEKIPK-SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----- 609
           V  LR ++  G      S+   Y +R          +Y+ T  GR+ RP   V N     
Sbjct: 562 VRNLRYMRRKGRMGSYVSVHTSYTQR---------CIYIHTDGGRLCRPYVIVENRRPLV 612

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDF 650
                             L  G IE++   E+   D  I   E      TTH E+     
Sbjct: 613 KQHHLDELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEDQIEDRTTHLEIETFTL 670

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A L+P P  NQSPRN YQC MGKQ MG    N   +    +Y L  P +P  +   
Sbjct: 671 LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNHNNRIDSLMYNLVYPHAPMVKSKT 730

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            +  + D  P G NA VAV+SY+GYD+EDA+ILNK+S +RG+    ++K+    ++    
Sbjct: 731 IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR--- 787

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T                    + R+   + D    K  F          D L  D
Sbjct: 788 -YANQT--------------------FDRIMGPMKDALTNKVIFK--------HDVLDTD 818

Query: 831 GLVYVGAKLNER--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
           G+V  G ++  +              +P+     +     V   Y G E   +E V +S+
Sbjct: 819 GIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSA 878

Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
              E   +      I  R  R P  GDKF+SR GQKG+  +    ED+PF D G+ PD++
Sbjct: 879 NAEEDFLIK-----ILLRQTRIPR-GDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMI 932

Query: 937 FNPHGFPSRMTIG 949
            NPHGFPSRMT+G
Sbjct: 933 MNPHGFPSRMTVG 945



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 749  ERGFAHGCIF-----KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            E  F +G  F     + +  ELE  G+NY G +  YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 959  EGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKH 1018

Query: 803  MVSDKWQTK 811
            MV DK   +
Sbjct: 1019 MVQDKMHAR 1027


>gi|224587859|gb|ACN58727.1| DNA-directed RNA polymerase III subunit RPC2 [Salmo salar]
          Length = 814

 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 182/605 (30%), Positives = 274/605 (45%), Gaps = 83/605 (13%)

Query: 379 QLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
           Q++ K+++       + DI    R   I + M N ++TGN S  +      M   G   +
Sbjct: 71  QIIPKQRAA------QFDIVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---V 117

Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
            + ++R+ ++S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L
Sbjct: 118 TQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 177

Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIAT 556
                I+  +    + ++   L    +  L     S P    +V L+G I+G I D    
Sbjct: 178 ALMTHITTDMEDGPIVKLAFNLGVEDVNLLCGEELSYPS-VFLVFLNGNILGVIRDH--Q 234

Query: 557 SLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
            LV   R+++  G   E +  S  +               +Y+ +  GR+ RP + +  G
Sbjct: 235 RLVYTFRLMRRAGFINEFVSISTNLTDR-----------CVYVSSDGGRLCRPYIIVKKG 283

Query: 614 -------NIEWIGTFEQVFMDICITMKEAYPGI------------------TTHRELSKT 648
                  +IE +    + F D        Y  +                  TTH E+   
Sbjct: 284 QPMVKNKHIEELTQGYRTFEDFLHESLVEYLDVNEENDCQIALYEHMINKDTTHLEIEPF 343

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
             L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  + 
Sbjct: 344 TLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLGYPQKPMVKT 403

Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
              + +D +  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF    ++K+    L   
Sbjct: 404 RTIELIDFEKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNAKCTLRR- 462

Query: 769 YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
              Y  +T +  V G M+ A     +      RH + D        G     + +E+K  
Sbjct: 463 ---YTNQT-FDKVMGPMLDAATRKPI-----WRHSILDAD------GICCPGEKVENK-- 505

Query: 829 PDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
              LV        + P+    +  + +Y  V   Y G  +  +E V +SS   +   +  
Sbjct: 506 -QVLVNKSMPTVTQTPLEGSAQPGQPQYRDVPVSYKGSTDSYIEKVMISSNADDAFLIK- 563

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               I  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHG+PSRM
Sbjct: 564 ----ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRM 619

Query: 947 TIGFL 951
           T+G L
Sbjct: 620 TVGKL 624



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 661 GYNYQGKDYVTSGITGEPIEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 720

Query: 828 GPDGLVYVGAKLNERDPMYSY 848
             DG + +G    ERD +  Y
Sbjct: 721 SRDGGLRLGEM--ERDCLIGY 739


>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
          Length = 952

 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 244/942 (25%), Positives = 386/942 (40%), Gaps = 184/942 (19%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSW--DGKAGGTFTKE-------VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V+      G  G   T+        +G+VPIML+S  C L 
Sbjct: 6   FPKAARLRNLTYSAPLYVDVSMRVIKKGHDGEELTEPQDLQKVFIGKVPIMLRSSYCTLY 65

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR---NAW-------- 229
             +   L E GE P + GGYFI+ G EK++        NH    K+   N +        
Sbjct: 66  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 125

Query: 230 ----KNR--GLLFSDL-----------GVYIRSVK---RDESATNNVLHFVTNGSARFMF 269
               +NR    +F  +           G YIR+     R E     V   +   + + + 
Sbjct: 126 MAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 185

Query: 270 SHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY 322
            H   +C       ++ +++   EE    Q + +V    I K      +     ++    
Sbjct: 186 EH---ICYDFSDTQMMELLRPSLEEAFVIQ-NQQVALDYIGKRGATVGVTREKRIKYAKE 241

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI-MTG---G 374
           +L   +LPH+  ++Y +  K     ++  +L     G    D  D    + + + G   G
Sbjct: 242 ILQKEMLPHVGVEEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLG 301

Query: 375 SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
            L+  L +K      A +       K+ ++  A +A +I S +   LATGN         
Sbjct: 302 GLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG------- 354

Query: 428 QLMQASGFVIMAENINRMRYMS---HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
           Q   A     +++ +NR+ Y S   H R ++     +E + ++PRQL    WG +CP  T
Sbjct: 355 QANAAGTRAGVSQVLNRLTYASTLPHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAET 413

Query: 485 PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
           P+G  CGL+ +L     I+    +  + +      +     ++PV+  IP QA  + ++G
Sbjct: 414 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPVV--IP-QATKIFVNG 470

Query: 545 RIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
             VG   D     ++ K          +   + +V   R ++       L ++T  GR  
Sbjct: 471 CWVGIHRD---PDMLVKTLRRLRRRVDVNTEVGVVRDIRLKE-------LRIYTDYGRCS 520

Query: 605 RPVMNL-------------------------------AAGNIEWIGTFEQVFMDICITM- 632
           RP+  +                               A G IE+I T E+    I +T+ 
Sbjct: 521 RPLFIVEKQRLLIKKKDIHALQLREGGPDDVGWHDLVAKGFIEYIDTEEEETTMISMTIN 580

Query: 633 ---------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
                    +EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  
Sbjct: 581 DLVQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 640

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
             N++++     Y L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+
Sbjct: 641 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 700

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           N+SS +RGF     F+S+F      +  Y  E    G                       
Sbjct: 701 NQSSIDRGF-----FRSLF------FRSYRDEEKKMGT---------------------- 727

Query: 804 VSDKWQTKDYFGR-DPANK-----ALEDKLGPDGLVYVGAKLNERDPMYSYW---KESEN 854
                  K+ FGR D AN         DKL  DGL   G +++  D +        + + 
Sbjct: 728 -----LVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDA 782

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRA 909
           +    RYS + +  + +    +G  +   +T N     ++  R++  R P +GDKF+SR 
Sbjct: 783 QGQASRYS-RRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRH 841

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG   + +  ED+P+T  G+ PDI+ NPH  PSRMTIG L
Sbjct: 842 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 883


>gi|29788820|gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonica Group]
          Length = 1174

 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 264/1015 (26%), Positives = 422/1015 (41%), Gaps = 183/1015 (18%)

Query: 40  TLSAPSLKNLTDKNFGKPPDK---QNEFLLTLG--APHIASFDFMLDEGLDLAVEDIAPI 94
           +L +P+ ++L      KP DK      FL   G    HI SF++ + +G+   V+    I
Sbjct: 37  SLPSPTYRSLA-APVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRI 95

Query: 95  EFEIYGKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGP----FNVTV 149
           E        L+ N V+       VP+  V     K  P   R T   YS P       TV
Sbjct: 96  EARNNPSIFLRYNSVRVG-----VPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTV 150

Query: 150 AWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
              ++ K    F   +G +PIML+S  C L     A+L   GE P + GGYFIV G EK+
Sbjct: 151 GKQYELKRKPNFI--IGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKV 208

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
                       I I+    KNR ++ +D      S  R  ++  +  H + + +  FM 
Sbjct: 209 ------------ILIQEQLSKNRIIIDTD------SKGRVIASVTSSTHEIKSKTVIFME 250

Query: 270 SHR---------KSMCLLGMMQSLHEE---------GIHTQHDSKVF-------FGQIF- 303
             +         K + ++ +M+++  E         G   ++   ++       F +I+ 
Sbjct: 251 KEKIYLQLNQFTKPIPIIVVMKAMGMESDQEVAQMVGRDPRYGDLLYPSIQECAFERIYT 310

Query: 304 -KEKLQY-DLRHL-----NEVE-ICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFH 351
            K+ LQY D + +     N+ E     +L +  + H+     ++  K +  + M  ++  
Sbjct: 311 QKQALQYMDDKVMYPGAGNQKEGRSKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMD 370

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES---------DIY 398
            +      D +D +  + +   G L    +  L K   S    ++ ++         D+ 
Sbjct: 371 AILNADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLS 430

Query: 399 AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
              + + I   +   ++TGN    +      M   G   +++ ++R+ YM+    + R +
Sbjct: 431 LHIKENIITHGLERAISTGNWDIKRFR----MHRKG---VSQVLSRLSYMASLGYMTRIT 483

Query: 459 -YFQEMR-SSEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKV 510
             F++ R +S PR L+   WG +CP  TP+G  CGL      L H+TT+    E  P   
Sbjct: 484 PQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTD---QEEGP--- 537

Query: 511 LAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATSLVPKLRMLKI 567
              + ++  SLG+  L L    +     + +VM +G I+G +   Q   + + KLR   I
Sbjct: 538 ---LMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILGKHRQPQRFANAMRKLRRSGI 594

Query: 568 VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------------ 609
           +GE +      +++   +        +++ +  GR+ RP++                   
Sbjct: 595 IGEFVS-----IFVNEKQHC------IHIASDGGRVCRPLIIADKGIPRVKEHHMKQLRD 643

Query: 610 --------LAAGNIEWIGTFEQVFMDICITMKEAYPGIT----THRELSKTDFLSNLANL 657
                   L  G IE++   E+    I +   E    +     TH E+     L  +A L
Sbjct: 644 GIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEPLTILGVVAGL 703

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           IP P  NQSPRN YQC MGKQ MG    N  ++    LY L     P       + +  D
Sbjct: 704 IPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVGYD 763

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
               G NA VAV+SY+GYD+EDA+++NKSS +RGF      K   +  E     Y    +
Sbjct: 764 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDRIV 823

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP---ANKALEDKLGPDGLVY 834
               D          G +  Q +R +  D +       R+     NK        D    
Sbjct: 824 KPQRDKD--------GALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDS--- 872

Query: 835 VGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            GA L +RD     +K+S   Y   +    E   V+ V + S   E   +   C     R
Sbjct: 873 -GAHLTDRD-----YKDSPAVY---KGVDGETTVVDRVMLCSDTDE--KLIIKCI---IR 918

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             R P VGDKF+SR GQKG+C      ED PF++ G+ PD++ NPHGFPSRMTIG
Sbjct: 919 HTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIG 973



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G   QA +F G ++YQ+L+HMV DK   +    R    +   
Sbjct: 1014 VKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPT 1073

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD + +Y
Sbjct: 1074 EGRSRDGGLRLGEM--ERDCLIAY 1095


>gi|378727686|gb|EHY54145.1| DNA-directed RNA polymerase III subunit C2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1225

 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 230/908 (25%), Positives = 377/908 (41%), Gaps = 146/908 (16%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V + ++    A       +GR+PIML+S RC L N + A++   
Sbjct: 172  PNECRLRDMTYAAPILVDIRYTKSKVAYRRKGMPIGRLPIMLRSSRCVLANKSEAEMCAM 231

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD--LGVYIRSVKR 248
             E P + GGYFIV G EK+            I ++    KNR ++ +D    +   SV  
Sbjct: 232  DECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRIIVEADPKKELITASVTS 279

Query: 249  DESATNNVLHFVTNGSARFM----FSHRKSMCLL-----------------GMMQSLHEE 287
               A  +  + V      +M     +    +C+L                 G   +L ++
Sbjct: 280  STHARKSKSYIVLKKDMLYMRHNILNEDVPICVLLKAMGVTSDMDMMAIVAGTDSTLQDD 339

Query: 288  -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                       GIHTQ  +  + G   +I ++   +     N V+     ++N  + H+ 
Sbjct: 340  FAINFEETIKLGIHTQQQALDYLGARIKITRKPTPFGQSRRNYVQEALEAVSNVFIAHVP 399

Query: 334  ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE- 384
                ++  K + ++HM  ++    Q    +D  D +  + +   G L    +  L KK  
Sbjct: 400  IENLNFRPKAIYVAHMARRVLMAKQNPALVDDRDYVGNKRLELAGQLLSLLFEDLFKKYN 459

Query: 385  ---KSGTSAVLKESD--------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
               K     VL++ +              A+ I   M   +ATGN +  +      M  +
Sbjct: 460  YDIKMNMDKVLRKPNRTEMADPCTVMMGHANHITQGMNRAIATGNWNLKRFR----MDRA 515

Query: 434  GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
            G   +   ++R+ +++    + R  S F++ R  S PR L+  ++G +CP  TP+G  CG
Sbjct: 516  GVTHL---LSRLSFIASLGMMTRISSQFEKTRKVSGPRALQPSSFGMLCPADTPEGEACG 572

Query: 492  LLNHLTTNCQIS---EYIPSKVLAQIPSV--LVSLG------------MLPLTPVIQS-I 533
            L+ +L     I+   E  P K L  +     +V++G            +L  TPV  +  
Sbjct: 573  LVKNLALMTHITTDDEEAPIKRLIFMLGAEDIVTVGGTELYAPGSYLVLLNGTPVATTRQ 632

Query: 534  PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE--KIPKSLEIV----------YL 581
            P   L      R  G + + ++T +    R + +  +  +I + L IV          YL
Sbjct: 633  PSHFLTSFRRLRRSGRVSEFVSTFINHHHRTINVATDEGRICRPLIIVEDKKSKVTKRYL 692

Query: 582  KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
            K   +G   +                  LA G +E++   E+   +I +   +     TT
Sbjct: 693  KSLRQGSMDFDDF---------------LARGLVEYLDVNEENDSNIALYESDINAS-TT 736

Query: 642  HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
            H E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P
Sbjct: 737  HLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGFIANNQFLRIDTLLYLMVYP 796

Query: 702  ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
              P  +    + +  D  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    + +  
Sbjct: 797  QKPLCKTRTIELVKYDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRKY 856

Query: 762  FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
             + L+   N  GT+     V+G  M+  +           H + D+        +    +
Sbjct: 857  PVSLKLYAN--GTKDT---VEGPTMENGVPVKA-------HALLDEDGIASVGAKVSQGE 904

Query: 822  ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
               +K  P+     G      + + +       +Y     S  +++ V  V   +   + 
Sbjct: 905  VYVNKYVPENANSSGLSDTASNSLGTSLMPQAQKYRLPDPSYIDKVMVSEVESGNQLIK- 963

Query: 882  GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                     I  R  R P VGDKF+SR GQKG+  +     D+PF+D G+ PDI+ NPHG
Sbjct: 964  ---------IQTRQTRVPEVGDKFSSRHGQKGVVGIIAEQVDMPFSDRGITPDIIMNPHG 1014

Query: 942  FPSRMTIG 949
            FPSRMT+G
Sbjct: 1015 FPSRMTVG 1022



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +E+GY+Y G + + SG+ G  + A +F G ++YQ+L+HMV DK  ++    R    +   
Sbjct: 1058 IEAGYSYDGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQDKMHSRSRGPRAILTRQPT 1117

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +    DG + +G    ERD + +Y      R      S K E  V+V   S GF   G  
Sbjct: 1118 EGRSRDGGLRLGEM--ERDCLIAYGASQLLRERLMLSSDKHE--VDVCE-SCGFMAFGRW 1172

Query: 885  TPNCAYIG 892
               CA  G
Sbjct: 1173 CQRCATAG 1180


>gi|108708689|gb|ABF96484.1| DNA-directed RNA polymerase III 130 kDa polypeptide, putative,
           expressed [Oryza sativa Japonica Group]
          Length = 1039

 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 264/1015 (26%), Positives = 422/1015 (41%), Gaps = 183/1015 (18%)

Query: 40  TLSAPSLKNLTDKNFGKPPDK---QNEFLLTLG--APHIASFDFMLDEGLDLAVEDIAPI 94
           +L +P+ ++L      KP DK      FL   G    HI SF++ + +G+   V+    I
Sbjct: 18  SLPSPTYRSLA-APVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRI 76

Query: 95  EFEIYGKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGP----FNVTV 149
           E        L+ N V+       VP+  V     K  P   R T   YS P       TV
Sbjct: 77  EARNNPSIFLRYNSVRVG-----VPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTV 131

Query: 150 AWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
              ++ K    F   +G +PIML+S  C L     A+L   GE P + GGYFIV G EK+
Sbjct: 132 GKQYELKRKPNFI--IGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKV 189

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF 269
                       I I+    KNR ++ +D      S  R  ++  +  H + + +  FM 
Sbjct: 190 ------------ILIQEQLSKNRIIIDTD------SKGRVIASVTSSTHEIKSKTVIFME 231

Query: 270 SHR---------KSMCLLGMMQSLHEE---------GIHTQHDSKVF-------FGQIF- 303
             +         K + ++ +M+++  E         G   ++   ++       F +I+ 
Sbjct: 232 KEKIYLQLNQFTKPIPIIVVMKAMGMESDQEVAQMVGRDPRYGDLLYPSIQECAFERIYT 291

Query: 304 -KEKLQY-DLRHL-----NEVE-ICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFH 351
            K+ LQY D + +     N+ E     +L +  + H+     ++  K +  + M  ++  
Sbjct: 292 QKQALQYMDDKVMYPGAGNQKEGRSKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMD 351

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES---------DIY 398
            +      D +D +  + +   G L    +  L K   S    ++ ++         D+ 
Sbjct: 352 AILNADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLS 411

Query: 399 AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
              + + I   +   ++TGN    +      M   G   +++ ++R+ YM+    + R +
Sbjct: 412 LHIKENIITHGLERAISTGNWDIKRFR----MHRKG---VSQVLSRLSYMASLGYMTRIT 464

Query: 459 -YFQEMR-SSEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKV 510
             F++ R +S PR L+   WG +CP  TP+G  CGL      L H+TT+    E  P   
Sbjct: 465 PQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTD---QEEGP--- 518

Query: 511 LAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVG-YILDQIATSLVPKLRMLKI 567
              + ++  SLG+  L L    +     + +VM +G I+G +   Q   + + KLR   I
Sbjct: 519 ---LMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLILGKHRQPQRFANAMRKLRRSGI 575

Query: 568 VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------------ 609
           +GE +      +++   +        +++ +  GR+ RP++                   
Sbjct: 576 IGEFVS-----IFVNEKQHC------IHIASDGGRVCRPLIIADKGIPRVKEHHMKQLRD 624

Query: 610 --------LAAGNIEWIGTFEQVFMDICITMKEAYPGIT----THRELSKTDFLSNLANL 657
                   L  G IE++   E+    I +   E    +     TH E+     L  +A L
Sbjct: 625 GIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQRSSITHIEIEPLTILGVVAGL 684

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           IP P  NQSPRN YQC MGKQ MG    N  ++    LY L     P       + +  D
Sbjct: 685 IPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVGYD 744

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
               G NA VAV+SY+GYD+EDA+++NKSS +RGF      K   +  E     Y    +
Sbjct: 745 KLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDRIV 804

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP---ANKALEDKLGPDGLVY 834
               D          G +  Q +R +  D +       R+     NK        D    
Sbjct: 805 KPQRDKD--------GALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDS--- 853

Query: 835 VGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
            GA L +RD     +K+S   Y   +    E   V+ V + S   E   +   C     R
Sbjct: 854 -GAHLTDRD-----YKDSPAVY---KGVDGETTVVDRVMLCSDTDE--KLIIKCI---IR 899

Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
             R P VGDKF+SR GQKG+C      ED PF++ G+ PD++ NPHGFPSRMTIG
Sbjct: 900 HTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIG 954



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
            ++ G++Y G + +YSG+ G   QA +F G ++YQ+L+HM
Sbjct: 995  VKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHM 1033


>gi|68076215|ref|XP_680027.1| DNA-directed RNA polymerase, beta subunit [Plasmodium berghei strain
            ANKA]
 gi|56500894|emb|CAH97643.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            berghei]
          Length = 1451

 Score =  219 bits (558), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/335 (39%), Positives = 180/335 (53%), Gaps = 38/335 (11%)

Query: 617  WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
            +I + E + +DI     E  P    + EL +T FLS LA+L P  D NQSPRN+YQCQM 
Sbjct: 890  YIDSDENLNIDI----YEQIPQKFEYMELKQTSFLSFLASLTPFSDHNQSPRNIYQCQML 945

Query: 677  KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
            KQTMG   LN  Y    K+YR+ TP  P      Y+   +DNFP GTNA+VA+++YTGYD
Sbjct: 946  KQTMGIQSLNMFYTFTNKIYRIITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYD 1005

Query: 737  MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
            MEDA+I+NK+S +RG     I+K+  I+L      Y        V G+ ++         
Sbjct: 1006 MEDALIINKASSDRGMFRTHIYKTEVIDL------YKKTNSPDFVLGNNIRYN------- 1052

Query: 797  YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY 856
                 + +S K   +++ G+          L  DGL  +  K+ E +P+YSY  +     
Sbjct: 1053 ----ANSLSSKNNIREHKGK---------FLNKDGLPCINQKILENNPLYSYINKKNELT 1099

Query: 857  VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
                +    +  V+ V          S     A I  R  R P VGDKFASR GQKG+ S
Sbjct: 1100 TYEIFKTHGDYYVDCV--------SNSQNNQIAIIRLRTTRPPLVGDKFASRHGQKGVIS 1151

Query: 917  VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
              +P ED+PF++SG+VPD++FNPHG PSRMTIG L
Sbjct: 1152 RLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGML 1186



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 163/314 (51%), Gaps = 25/314 (7%)

Query: 358 QLDSEDSIMLQEIMTGGSLYLQLL-KKEKSGTSA--VLKE--SDIYA------AFRASSI 406
           +L SE+  M  ++ +  +L L  + +KEK   SA   L+E  SD          F A+S 
Sbjct: 489 ELTSENDHMNSKMDSTKNLRLMFMNEKEKLFASADGYLREMFSDARVFIENSRTFGAASF 548

Query: 407 ESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
             +++    TGN+++     +   Q SG+VI+A+ IN +R +++FR++HRGS+FQ+++  
Sbjct: 549 --SISYLFKTGNIAS---DYIHYQQKSGWVILADEINNLRLLTNFRSIHRGSFFQDVKVL 603

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA-QIPSVLVSLGM-- 523
            PR+L  ++WGFICPVHTPDG+PCGLLNHL+  C I     ++     I   L  +G+  
Sbjct: 604 SPRKLLGESWGFICPVHTPDGSPCGLLNHLSQYCCIYNVASNESHKFNIKMYLKKIGINI 663

Query: 524 -LPLTPVIQSIPE-QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKS-LEIVY 580
            L  T  I +I E Q + +++D   + YI +      V KL+  K       KS  EI+ 
Sbjct: 664 NLDETSGIHTIYENQTIPIIVDSVPITYISETEFKRTVYKLKYAKNHNLYNLKSHFEILA 723

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
               +  M     + + T  GR++RP++NL    IE+I    Q ++ I +   +      
Sbjct: 724 YLNEQSMMD---SIIINTCTGRIIRPILNLKMKCIEFISPGYQPYVSIAVNYDDILKNNL 780

Query: 641 THRELSKTDFLSNL 654
             + L K + + NL
Sbjct: 781 ARKILKKKENIVNL 794



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L  GY+YYGTE +YSG+ G  +QA IFFGV++YQRLRHM  DK Q +
Sbjct: 1270 LNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVR 1316



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 121/296 (40%), Gaps = 55/296 (18%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
           YP   +   S Y G   + +   +  +   T T   G +PIM+ S  C+L+NL   +L++
Sbjct: 138 YPYLCKLACSTYEGEVLMVINKQYKNEIVRT-TVSTGFIPIMVLSDLCNLKNLNKKELVQ 196

Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
           +GE     GG+FI+ GH K++R +I  + N  +  + N             V+I  +  D
Sbjct: 197 KGEDESLLGGFFIISGHLKIIRYVICPKYNSILLNEENK------------VHINCLLSD 244

Query: 250 ESATNNVLHFVTNGSARFMFSHRKS----------MCLLGMMQSLH-----EEGIHTQHD 294
            S   N L ++ N    F+   + S          +CL  + +  +     + GI  ++ 
Sbjct: 245 NSVFINSLAYLKNYEYEFLSRFQGSFIHIPFNVLILCLSPIKKKSYIYNKIKLGIKNENA 304

Query: 295 SK--------VFFGQIFKEK---LQYDLRHL----------------NEVEICDYMLTNC 327
            K        +F      EK    +Y+L+++                N  +    ++  C
Sbjct: 305 IKYIENYINSIFLKNNINEKEIFEKYNLKYIGKYANVSRTIFRYYEGNNHKKGKSVINYC 364

Query: 328 ILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK 383
           +LPHL    +KF  +  M  +L      ++   ++DS+    + T  SL   +LK+
Sbjct: 365 VLPHLQTNSEKFETICLMFKQLVLSKFKLITTVNKDSLEYHSVTTCSSLLSNILKE 420


>gi|367054822|ref|XP_003657789.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
 gi|347005055|gb|AEO71453.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
          Length = 1048

 Score =  219 bits (558), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 229/914 (25%), Positives = 364/914 (39%), Gaps = 157/914 (17%)

Query: 133 EARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGE 192
           E R     Y+ P  V +A+S D K        + R+P+MLKS +C L   T AQ+    E
Sbjct: 2   ECRLRDMTYAAPVVVDIAYSRDRKKIIRRDIPLCRIPVMLKSAKCCLSGATNAQMEIMNE 61

Query: 193 HPDEWGGYFIVGGHEKLVRL---LINNR------------------------RNHPIAIK 225
            P + GGYFI+ G EK++ +   L  NR                        + + I  K
Sbjct: 62  CPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADDKGGVSASVTSSTHERKSKTYVILKK 121

Query: 226 RNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLH 285
                N  +L   + + I        +   ++  V  G AR+          L       
Sbjct: 122 DRIALNHNVLVEPIPIVIVLKALGGLSDYEIMELVAGGDARYQDD------FLINFDEAT 175

Query: 286 EEGIHTQHDSKVFFGQIFKEKLQYDLR-----HLNEVEICDYMLTNCILPHLD----DYW 336
           + G++TQ  +  + G   K       R       + VE     L N I+ H+     D++
Sbjct: 176 KAGVYTQQQALEYIGVRVKMGGPKKGRPGTAPRRSPVEEGLDALANIIIAHVTIEDLDFY 235

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSG 387
            K + ++ M  ++         +D  D +  + +   G L L LL ++         K  
Sbjct: 236 PKAIYIAMMVRRVLMAAHNPKLVDDRDFVGNKRLELAGQL-LSLLFEDLFKMFVASLKGN 294

Query: 388 TSAVLKESDIYAAF--------RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
                K+ +  +A+        +  SI   +   + +GN +  + +    M  +G   + 
Sbjct: 295 MEYFFKKPNRTSAYDPVGPISTQGQSITQGLNRAIQSGNWNVKRFN----MNRAG---VT 347

Query: 440 ENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
             ++R+ Y++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L 
Sbjct: 348 HVLSRLSYIAVVGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLA 407

Query: 498 TNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATS 557
               I+     + +      L+  G+ P+     +   +    ++      + L +    
Sbjct: 408 LMTHITTNAEEQPVRNWIFGLIE-GVQPIRMFTGTEMHKPGTYIIHLNGTPFALTRHPKQ 466

Query: 558 LVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN-------- 609
              + + ++  G   P     V +   E     +  +++ T  GR+ RP +         
Sbjct: 467 FAARFKTMRRRGHISP----FVSIHINEH----FSAIHIATDEGRICRPYIIVKDGKSKL 518

Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
                             L  G IE++   E+    I I+  +     TTH E+     L
Sbjct: 519 KPEHLRLLQLGKATFEDFLKRGVIEYLDVNEENDALIAISEDDINQS-TTHLEIEPFTIL 577

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
             +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY L  P  P       
Sbjct: 578 GAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTI 637

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
             +  D  P G NA V V+SY+GYD+EDA++LNK+S +RGF    +F+    EL    N 
Sbjct: 638 QLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYAAELLQYPN- 696

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
            G +    G+                             KD  GR  A  A  DK   DG
Sbjct: 697 -GRKDRLGGIQ----------------------------KDEEGRTIAKHACLDK---DG 724

Query: 832 LVYVGAKLNERDPMY--------------SYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
           L  VG +++  + M               S     + R     Y   +   ++ V +S+ 
Sbjct: 725 LAIVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDDFRPAPVNYRTPDPAYIDKVMVSNT 784

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             +   +      +  R  R P +GDKF+SR GQKG+  +    ED+PF+DSG+VPDI+ 
Sbjct: 785 EKDTAIIK-----VQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSDSGVVPDIIM 839

Query: 938 NPHGFPSRMTIGFL 951
           NPHGFPSRMT+G L
Sbjct: 840 NPHGFPSRMTVGKL 853



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 34/198 (17%)

Query: 714  LDMDNFPMGTNAIVAVISYTGYDMEDAMILNK-----------SSYERGFAHGCIFKSMF 762
            +D ++ P   + +V  I    +     M + K            +  R +  G  F+S  
Sbjct: 821  VDQEDMPFSDSGVVPDIIMNPHGFPSRMTVGKLFECLTGKAAVVAGRRDYGFGDAFRSHP 880

Query: 763  IE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
            +E      +E G+++ G +   SG+ G   +A +F G ++YQRL+HMV DK  ++    R
Sbjct: 881  VEEMGRVLVEHGFSWEGKDYFTSGITGDPHEAYLFNGPIYYQRLKHMVQDKMHSRSSGPR 940

Query: 817  DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
                +   +    DG + +G    ERD + +Y              G  ++ +E +  SS
Sbjct: 941  AILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMYSS 984

Query: 877  GFTEGGSVTPNCAYIGYR 894
              T    +   C  +GY+
Sbjct: 985  DATR-VDICEWCGLLGYK 1001


>gi|290990263|ref|XP_002677756.1| predicted protein [Naegleria gruberi]
 gi|284091365|gb|EFC45012.1| predicted protein [Naegleria gruberi]
          Length = 1120

 Score =  219 bits (557), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 248/975 (25%), Positives = 412/975 (42%), Gaps = 153/975 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-TLKLNIVKAAISEPKVPAGPVGIHFNKYY 130
           HI SF++ ++  +   V+  + I  +   K  +K N +   I++P++  G   I      
Sbjct: 10  HIDSFNYFINVDIKKIVQANSMITPDTDDKFYIKYNDI--YIAKPRLDEGTDTIELT--- 64

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE---VGRVPIMLKSKRCHLRNLTPAQL 187
           P   R     YS    V+V +            E   +GR+PIML+  RC L      +L
Sbjct: 65  PQLCRLRDLTYSADIIVSVEYPQIVGNETLIKHEDLSIGRMPIMLQCDRCVLCGKDDKEL 124

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
            + GE P + GGYFIV G EK+  +     +N  I    +  K + +  S  G    S  
Sbjct: 125 AKLGECPLDPGGYFIVKGVEKVCLIQEQLSKNRVII---DLDKEKQITASVTG----STH 177

Query: 248 RDESATNNVLH----FVTNGS----------------------ARFMFSHRKSMCLLG-M 280
             +S TN ++     ++ + S                       + + S RK +  LG  
Sbjct: 178 YRKSKTNIIIKHERFYLDHNSFTKDIPIIMLFKAMGIESDQEIVQLIGSDRKYIDALGPS 237

Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
            +    EG++T   +  +  +  K  L    ++  ++E    +L+N IL H+     +Y 
Sbjct: 238 FEECIREGVYTSEQAIEYMSRYLK--LADFRKNKPKMEETREILSNIILCHIPVYKFNYK 295

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK--------- 383
            K + L+ M  ++   +     +D +D    + +   G L    +  L KK         
Sbjct: 296 MKIVYLAIMVKRMIDALHDSANIDDKDYYGNKRLEMAGQLLSLLFEDLFKKFNDEIKKTL 355

Query: 384 -EKSGTSAVLKES----DIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
            +K+G  +    S    DI + F A+S  I   + N +++GN +  +      M+ +G  
Sbjct: 356 EKKTGRRSRRATSTPTEDISSIFNANSSKITEGLKNSISSGNWNVQRFK----MERAG-- 409

Query: 437 IMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL-- 492
            +   ++R+ +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL  
Sbjct: 410 -VTHVLSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGLLCPSDTPEGEGCGLVK 468

Query: 493 ----LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
               L H+TT+ +    I       +  + +  G     P        + +V L+G I+G
Sbjct: 469 NLALLTHVTTDDEEEPIIRLAYNIGVEDINLISGEELNHP-------SSYVVFLNGLILG 521

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
             + +  +      RM++  G    K  E V + + +    L+  +Y+ +  GR+ RP++
Sbjct: 522 --IHRFPSQFTKLFRMMRRAG----KIHEFVSIFKND----LHKAIYIASDGGRVCRPLI 571

Query: 609 ---------------NLAAGNIEWIGTFEQVFMDICITMKEAYPGI----------TTHR 643
                           LA G   W    ++  ++     +E    I          TTH 
Sbjct: 572 IVENQKLKVTQKHLSELAEGIRTWDDFLKEGLIEYLDVNEENNSNIVFREEDIKLETTHF 631

Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
           E+     L   A L+P P  NQSPRN YQC MGKQ MG    N   +    L  +  P  
Sbjct: 632 EIEPFTILGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGAIAYNQFNRLDTLLLLMVYPQK 691

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  +    + +  +    G NA +AV+SY+GYD+EDA+++NK+S +RG+      K    
Sbjct: 692 PMVKTKTIELIQFEKLSGGQNASIAVMSYSGYDIEDAVVVNKASIDRGYGRCIYLKKYVT 751

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH-YQRLRH----MVSDKWQTKD-YFGRD 817
           EL+  +N  G E +      +     +    +  YQRL       V ++    D Y  R 
Sbjct: 752 ELKRYHN--GVEDVLQPPPNAQQAKDMDQKRLKSYQRLDFDGMCAVGERIYPNDMYINRF 809

Query: 818 PANKALEDKLG---PDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM 874
            A    ++ LG   P      GA  N   P   ++K            G   + V+ V +
Sbjct: 810 VAQNTQDNLLGMNTPTPSSSNGAAANTYKPSPIFYK------------GPCSVYVDQVLI 857

Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
           +  +  GG       Y+  R  R P +GDKF+SR GQKG+C +    +D+PF + G+ PD
Sbjct: 858 TPNYDRGGYAL---KYL-LRQTRRPELGDKFSSRHGQKGVCGLIVDQQDMPFNEQGICPD 913

Query: 935 IVFNPHGFPSRMTIG 949
           ++ NPHGFPSRMT+G
Sbjct: 914 MIMNPHGFPSRMTVG 928



 Score = 48.1 bits (113), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +  G++Y G + + SG+ G  M   I+FG V YQRL+HMV DK   +
Sbjct: 964  IRHGFSYSGKDLLTSGITGETMSCYIYFGPVFYQRLKHMVLDKMHAR 1010


>gi|190407518|gb|EDV10785.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Saccharomyces
           cerevisiae RM11-1a]
          Length = 881

 Score =  219 bits (557), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 203/728 (27%), Positives = 315/728 (43%), Gaps = 133/728 (18%)

Query: 289 IHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLS 343
           I+TQ  +  + G   K   +  L  L E +E     +   ++ HL     D+ +K L ++
Sbjct: 27  IYTQQQALEYIGAKVKTMRRQKLTILQEGIE----AIATTVIAHLTVEALDFREKALYIA 82

Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KSGTSAVLKES 395
            MT ++   +     +D  D +  + +   G L    +  L KK     K     VLK+ 
Sbjct: 83  MMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKP 142

Query: 396 DIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
           +    + A        ++I S +   ++TGN S  +      M+ +G   +   ++R+ Y
Sbjct: 143 NRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---VTHVLSRLSY 195

Query: 448 MSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-- 503
           +S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L     I+  
Sbjct: 196 ISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTD 255

Query: 504 -EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
            E  P K L  +      LG+  +T +  +       V L+G ++G I  +  T  V + 
Sbjct: 256 DEEEPIKKLCYV------LGVEDITLIDSASLHLNYGVYLNGTLIGSI--RFPTKFVTQF 307

Query: 563 RMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------- 614
           R L+  G    K  E + +      M ++    + T  GR+ RP++ ++ G         
Sbjct: 308 RHLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSDGQSRVKDIHL 359

Query: 615 ------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLAN 656
                             +E++   E+    I +  K+  P +T H E+     L  +A 
Sbjct: 360 RKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLEIEPFTILGAVAG 418

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    + +D 
Sbjct: 419 LIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDY 478

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
           D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF      +     L+   N+  T+ 
Sbjct: 479 DKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANH--TQD 536

Query: 777 MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
           +  G+                 R+       WQ +               LGPDGL  VG
Sbjct: 537 IIGGM-----------------RVDENGDPIWQHQ--------------SLGPDGLGEVG 565

Query: 837 AK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVVRMSSGFTEG 881
            K       +N+  P  S    + N        R     Y G E   ++ V MS    + 
Sbjct: 566 MKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQ 625

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
             +      +  R  R P +GDKF+SR GQKG+C +    ED+PF D G+VPDI+ NPHG
Sbjct: 626 ALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHG 680

Query: 942 FPSRMTIG 949
           FPSRMT+G
Sbjct: 681 FPSRMTVG 688



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
           I ++ G+NY G + +YSG+ G  +QA IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 722 ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 781

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
             +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 782 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 824

Query: 883 SVTPNCAYIGY 893
            V   C  +GY
Sbjct: 825 DVCDKCGLMGY 835


>gi|452845424|gb|EME47357.1| hypothetical protein DOTSEDRAFT_125117 [Dothistroma septosporum
           NZE10]
          Length = 1147

 Score =  218 bits (556), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 240/915 (26%), Positives = 378/915 (41%), Gaps = 170/915 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  +   +            ++GR+P+ML+S RC L     + +   
Sbjct: 112 PNECRLRDMTYSAPIYIDYVYPRQSGNVKKTNVQIGRMPMMLRSSRCVLSGRPESDMGML 171

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E   + GGYFIV G EK+            I ++    KNR ++ S  G+   SV    
Sbjct: 172 NECAVDPGGYFIVRGQEKV------------ILVQEQLSKNRIIVESFKGMIQASVT-SH 218

Query: 251 SATNNVLHFVTNGSARFMFSHRK-------SMCLLGM-MQSLHE---------------- 286
           +A      +V          H         ++ L  M +QS HE                
Sbjct: 219 TANVKTKTYVVLKKGHLYLKHNSLTEDVPVAIALRAMGVQSDHEILLLAAGNDAQYQDEF 278

Query: 287 ---------EGIHTQHDSKVFFGQIFK-EKLQYDLRHLNEVEICDYM----LTNCILPHL 332
                    EG  TQ     +     K E+         EV+         L   I+PH+
Sbjct: 279 APNLEMAALEGAFTQEQGLDYIATRLKPERFPVYASPTGEVKTPKQKAMEKLAATIIPHV 338

Query: 333 D----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--KS 386
                ++  K L ++ MT ++   +     +D  D +  + +   G + L LL ++  K 
Sbjct: 339 PVEDMNFRPKALYIAFMTRRVLMAMIDPKLVDDRDYVGNKRLELAGQM-LALLFEDLFKD 397

Query: 387 GTSAV-------LKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQ 431
            T  +       LK+S+  A F          + I S M   ++TGN +  +      M 
Sbjct: 398 CTRQIFINMEKQLKKSNPTAEFDPLRLIEQCDARITSGMERAISTGNWTLKRFR----MD 453

Query: 432 ASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTP 489
            +G   +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  
Sbjct: 454 RAG---VTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEA 510

Query: 490 CGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIV 547
           CGL+ +L     I+    +     +  ++  LG   +T     +   + A +V ++G   
Sbjct: 511 CGLVKNLALMTHITT---ADEEGPVRMIMYVLGAEEVTSASGAEIYNDGAYIVFVNGTPT 567

Query: 548 GYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
              L +     +   R  + +G +I + + I            + G+++ T  GR+ RP+
Sbjct: 568 A--LTRQPKRFLNGFRKFRRMG-RISEFVSIFINHH-------HNGVHIATDEGRVCRPL 617

Query: 608 ----------------------MN----LAAGNIEWIGTFEQVFMDICITMKEAYPGITT 641
                                 MN    L+ G +E++   E+   +I +  K+     TT
Sbjct: 618 IVVEQGKSKVTTRFLESLRKGSMNFDDALSRGIVEYLDVNEENDSNIAVYEKDIDEH-TT 676

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P
Sbjct: 677 HLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVYP 736

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
            +P  +    + +  D  P G NA+VAV+SY+GYD+EDA++LNK+S +RGF    +FK +
Sbjct: 737 QAPMVKTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKV 796

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            + L++                        +G  H        +D+  TKD       N 
Sbjct: 797 SMPLKA------------------------YGNGH--------TDRMGTKD------NNN 818

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFT 879
               K+G DG+V VG +L   D MY   +   N+   V+ R      M +        + 
Sbjct: 819 TRHRKIGTDGIVEVGVELENSD-MYMLKECPVNQATSVSQRDQKWSPMHMSYKLPDPCYA 877

Query: 880 EGGSVTPNCA-----YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
           +   VT N A      I  R  R P +GDKF+SR GQKG+  +     D+PF+D G+VPD
Sbjct: 878 DKVMVTANEANSTIIKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQADMPFSDQGVVPD 937

Query: 935 IVFNPHGFPSRMTIG 949
           I+ NPHGFPSRMT+G
Sbjct: 938 IIMNPHGFPSRMTVG 952



 Score = 47.4 bits (111), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + + SG+ G  +   +FFG ++YQ+L+HMV DK  ++    R    +   
Sbjct: 988  VKHGFSYSGKDCLTSGITGESLPMYVFFGPIYYQKLKHMVQDKMHSRSTGPRAILTRQPT 1047

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
            +     G + +G    ERD + +Y              G  ++ +E + +SS   E   V
Sbjct: 1048 EGRSRQGGLRLGEM--ERDCLIAY--------------GASQLLLERLMISSDAHE-VDV 1090

Query: 885  TPNCAYIGY 893
               C  +GY
Sbjct: 1091 CQVCGMMGY 1099


>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
          Length = 1234

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 243/935 (25%), Positives = 379/935 (40%), Gaps = 165/935 (17%)

Query: 130  YPTEARQTRSVYSGPFNV-TVAWSWDGKAGGTFTKE--------------VGRVPIMLKS 174
            +P EAR     YS P  V  V   +   A G    E              +G VPIML+S
Sbjct: 145  FPHEARLRNLTYSAPLYVDVVCQKFQANATGPTKIEEMEPYDQVETPKEFIGMVPIMLRS 204

Query: 175  KRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN-----AW 229
            + C L + T  +L E  E   + GGYF++ G EK++        NH    +++     +W
Sbjct: 205  QYCVLTHKTDKELTELNECVYDQGGYFLINGSEKVLIAQERMSNNHVYCFRKSGVSKYSW 264

Query: 230  KNRGLLFSDLGV----------YIRSVKRDESATNNV-------------------LHFV 260
                    + GV          Y RS  +   + N +                   L FV
Sbjct: 265  VCETRSHVEHGVRPTSTMYVQMYQRSGGKSAISGNQIRAVIPYIRQDIPVVIIFRALGFV 324

Query: 261  TNGSARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRH 313
             +   R +  H   +C       L+   +   EE    Q + +V    I +     ++  
Sbjct: 325  AD---REILEH---ICYDFTDVELMERFKPSLEEAFVIQ-EQEVALDFIGRRGSAINVGK 377

Query: 314  LNEVEICDYMLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQE 369
             + +     +L   +LPH+  +D+ +  K   L ++  KL     G +  D  D    + 
Sbjct: 378  ADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKR 437

Query: 370  I-MTG---GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGN 418
            + + G   GSL+  L KK        L       K+ ++  A R+ +I + +   LATGN
Sbjct: 438  LDLAGPLLGSLFRILFKKLTKDVKTYLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGN 497

Query: 419  VSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDA 475
                K ++      +G   +++ +NR+ Y   +SH R ++     +E + ++PRQL    
Sbjct: 498  WGMQKTAS-----KAG---VSQVLNRLTYASSLSHLRRLN-TPLGREGKQAQPRQLHNTH 548

Query: 476  WGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE 535
            WG ICP  TP+G   GL+ +L     IS   P   + +      +  +  + P  Q IP 
Sbjct: 549  WGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKP--QIIP- 605

Query: 536  QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLY 595
             +  + ++G  VG  + +    LV  LR L+   +   +   I  L   E        L 
Sbjct: 606  HSTKIFVNGNWVG--VHREPNELVRTLRSLRRCVDIDAEVSVIRDLMNRE--------LR 655

Query: 596  LFTGPGRMLRPVMN-----------------------------LAAGNIEWIGTFEQVFM 626
            ++T  GR+ RP+                               L  G +E I T E+   
Sbjct: 656  IYTDAGRVCRPLFIVEENQLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVC 715

Query: 627  DICITMKEAYPGIT--THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
             I +  K+   G    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  C
Sbjct: 716  MIAMEPKDVGLGTQQYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYC 775

Query: 685  LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
             N+R +       L  P  P       + L     P G NAIV + SYTGY+ ED++I+N
Sbjct: 776  SNFRARMDTMANVLNYPQKPLVTTRAMEFLHFRELPSGINAIVGIASYTGYNQEDSLIMN 835

Query: 745  KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            +S+ +RG     +F+S F      Y  Y  +       G      +      +++     
Sbjct: 836  QSAIDRG-----LFRSTF------YRCYVDQERNKSPHGGSAATALVSNCEEFEKPSRDN 884

Query: 805  SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY---SYWKESENRYVTCRY 861
                +   Y            KL  DGLV  G +++  D +    S    SE+  +  R+
Sbjct: 885  CLGLRHGSYH-----------KLDADGLVAPGTRVSGNDIIIGKTSPLPVSEDSSLEQRH 933

Query: 862  SGKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICS 916
              K +    +    +G  +   +T N        + +R  R P +GDKFASR GQKG   
Sbjct: 934  Q-KRDASTSLRSHENGIIDSVMLTTNADGFKFTKVRFRNIRIPQIGDKFASRHGQKGTIG 992

Query: 917  VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            + +  ED+PFT  G+ PDI+ NPH  PSRMT+G L
Sbjct: 993  MTYRQEDMPFTLEGITPDIIVNPHAIPSRMTVGHL 1027



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY  +G E +YSG  G  + AQIF G   YQRL+HMV DK  ++
Sbjct: 1064 GYQRHGNEVLYSGHTGRPLTAQIFIGPTFYQRLKHMVDDKIHSR 1107


>gi|115396768|ref|XP_001214023.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114193592|gb|EAU35292.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1219

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 243/975 (24%), Positives = 406/975 (41%), Gaps = 163/975 (16%)

Query: 72   HIASFDFMLDEGLDLAVEDIAPIEFEI----YGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
            HI S++++++  L   VE  + I  ++    Y K   + +     ++    AGP     +
Sbjct: 114  HIDSYNYLVEVQLKKIVESSSIIRSDVDHNFYIKFTDIYLGAPRRADESQDAGP-AFTGS 172

Query: 128  KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
               P E R   + Y+ P  V   +    +        +GR+P+ML+S +C L N +PA++
Sbjct: 173  TVTPQECRLRDTTYAAPIQVDFDYVRGRQRVRKRGYAIGRMPVMLRSSKCVLANKSPAEM 232

Query: 188  IERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK 247
                E P + GGYFIV G EK+            I ++    KNR ++ +D    I    
Sbjct: 233  TVLNECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRIIVETDPKKEIVQAS 280

Query: 248  RDESATNN--------------VLHFVTNGS--------ARFMFSHRKSMCLLGMMQSLH 285
               S+                 V H V N          A  + + ++ + L+  +  ++
Sbjct: 281  VTSSSNERKSKSYIVLKKDKLYVKHNVLNEDIPIVILLKAMGINTDKEMLLLVAGVDKVY 340

Query: 286  EE------------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILP 330
            +E            GI+TQ  +  + G   +I +++  Y   H+ E       + + I+ 
Sbjct: 341  QEDFAINFEEAINLGIYTQQQALDWIGARIKINRKQASYRRTHVQE---AIEAIASVIIS 397

Query: 331  HLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLK 382
            H++    ++  K + ++HM  ++         +D  D +  + +   G L    +  L K
Sbjct: 398  HIEVKNMNFRPKAIYVAHMARRVLMAKNDPTLVDDRDYLGNKRLELAGQLLALLFEDLFK 457

Query: 383  K----EKSGTSAVLKESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASG 434
            K     K     VL + +   AF A S+ S  TN +  G    +S G  S  +  M+ +G
Sbjct: 458  KFCFDIKMNVDKVLNKRNRAEAFDAWSVMSMHTNHITQGMNRAISTGNWSLKRFRMERAG 517

Query: 435  FVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL 492
               +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  T    P G 
Sbjct: 518  VTHV---LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADT----PEGE 570

Query: 493  LNHLTTNCQISEYIPSK-VLAQIPSVLVSLGMLPLTPVIQSIPEQAL------MVMLDGR 545
               L  N  +  +I +      I +++  LG       IQ++  + L       + ++G 
Sbjct: 571  ACGLVKNLALMTHITTNDEEGPIRNLIFMLG----AEDIQTLGGKELYGPGCYTISINGT 626

Query: 546  IVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR 605
                 L +     +   R L+ +G +I + + I Y+   +        +++ T  GR+ R
Sbjct: 627  PTA--LTRRPKYFLNAFRRLRRMG-RISEFVSI-YINHHQHA------VHVATDDGRICR 676

Query: 606  PVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGI 639
            P++                           LA G +E++   E+    I I  K+     
Sbjct: 677  PLIVVENGKSTVQTHHLEKLREGTMQFDDFLAQGLVEYLDVNEENDSLIAIYEKDISE-T 735

Query: 640  TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
            TTH E+     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY + 
Sbjct: 736  TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMV 795

Query: 700  TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
             P  P  +    +    D  P G NAIVAV+SY+GYD+EDA++LNK S +RGF    +F+
Sbjct: 796  YPQKPMVKSRTIELTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFR 855

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
                 L+S          YS     M+    +      ++   + SD             
Sbjct: 856  KYVTNLKS----------YSNGTKDMLTPPSYENDAPIRKHALLESDGL----------- 894

Query: 820  NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT-----CRYSGKEEMCVEVVRM 874
              A+ +++   G VY+     ++   +       NR +        Y   +   ++ V +
Sbjct: 895  -AAVGEQVNA-GEVYINKSTPDQANSFGIGGPDPNRPINYMPTPMTYKLPDPAYIDQVLL 952

Query: 875  SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
            S    E   V      +  R  R P VGDKF+SR GQKG+  +     D+PFTD G+ PD
Sbjct: 953  SVTENENQLVK-----VLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPD 1007

Query: 935  IVFNPHGFPSRMTIG 949
            I+ NPHGFPSRMT+G
Sbjct: 1008 IIMNPHGFPSRMTVG 1022



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1056 ILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1115

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1116 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1158

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1159 DVCEKCGFMGY 1169


>gi|339233902|ref|XP_003382068.1| DNA-directed RNA polymerase III subunit RPC2 [Trichinella spiralis]
 gi|316978998|gb|EFV61866.1| DNA-directed RNA polymerase III subunit RPC2 [Trichinella spiralis]
          Length = 1302

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 235/901 (26%), Positives = 374/901 (41%), Gaps = 148/901 (16%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V + ++   +       ++GR+PIML+S RC L+     +LI+ 
Sbjct: 251  PHECRLRDITYAAPIFVDIEYTRGKEKVLRKNFQIGRMPIMLRSSRCVLKGKNEKELIKM 310

Query: 191  GEHPDEWGGYFIVGGHEKLV---------RLLINNRRNHPIA--IKRNAWKNRG---LLF 236
             E P + GGYFI+ G E++V         R+L+   +   I+  +      +RG   +++
Sbjct: 311  NECPLDPGGYFIIRGTERVVLIQEQMSKNRMLVAMDKTDEISCGVLTMTHISRGKTYVVY 370

Query: 237  SDLGVYIRSVKRDESATNNVLHFVTNG--SARFMF---SHRKSMCL--LGMMQSLHEEGI 289
                 ++R+ +  E  +  ++ F   G  S R M    S  +  CL  L  +Q LH+  I
Sbjct: 371  KKDIFFMRNNRLTEDISMAII-FRAMGILSEREMLHLVSGEQDSCLVFLNTLQDLHKREI 429

Query: 290  HTQHD---SKVFFGQIFKEKLQYDLRH--LNEVEICDYMLTNCILPHL----DDYWDKFL 340
             TQ D   + +F G   K    +  ++  +++ E+    LT+ I  H+     +   K +
Sbjct: 430  FTQKDVIVALIFVGNRIKGNTFFIAKNSTVSKDELALSFLTDVICAHVPSSAGNMKLKAI 489

Query: 341  CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLKES- 395
             +  M  ++  V+ G   +D  D    + +   GSL    +  L K+     S +   + 
Sbjct: 490  YMGLMIQRIIQVMLGKATVDDPDYYGNKRLELAGSLLALLFEDLFKRFNQEISLLTDRTI 549

Query: 396  --------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
                    D         I + + N +ATGN    +      M   G   + + ++RM Y
Sbjct: 550  QRLRTALFDFVKHIPKDLITNGLLNAIATGNWVIRRYR----MDRHG---VTQILSRMSY 602

Query: 448  MSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTN 499
            ++    + R  S F+  R    PR L+   WG +CP  TP+G PCGL      L+H+TT+
Sbjct: 603  IAMLGMMTRINSQFEHTRKMGGPRSLQPSQWGMLCPADTPEGEPCGLIKSLALLSHITTD 662

Query: 500  CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI---PEQALMVMLDGRIVGYILDQIAT 556
               SE +P K          +LG+  +  +   +   P  +  V L+G + G   D +  
Sbjct: 663  ---SEELPVK------KAFCNLGVEDVNYLSTEVLLHPSTSF-VFLNGVLFGITRDVV-- 710

Query: 557  SLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
             L   LR ++  G         ++L   ++       LY+    GR+ RP +        
Sbjct: 711  QLYNSLRYMRRHG--FLNKFVNLFLNEEQRT------LYVSCDGGRICRPYIIVENGKSL 762

Query: 609  -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                    LA G            IE++   E+    I +   E     TTH E+     
Sbjct: 763  LQHHHLRELACGKRNLEDFFKDGLIEYLDVSEEESALIAVYDSEITEK-TTHLEIEPFTL 821

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
                A LIP P+ NQSPRN YQC MGKQ MG    N   +    LY L  P  P  +   
Sbjct: 822  FGVCAGLIPYPNHNQSPRNTYQCAMGKQAMGIIAYNQSIRMDSLLYGLVYPQRPLVKTKT 881

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
             + ++ +  P G NAIVAV+SY+G+        NK          C  KS          
Sbjct: 882  IELINFECLPAGQNAIVAVMSYSGFGRCHVYRSNK----------CFVKS---------- 921

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                   YS +D   +   +          RHM  D              + L +K+ P 
Sbjct: 922  -------YSNMDSDRILGPLVDVTTGKPVFRHMALDAEGIVKPGNVVKIGQVLVNKVAPR 974

Query: 831  GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
                  A LNE +P  +   E++ +     ++G  E   E V ++S       +      
Sbjct: 975  -----SALLNEEEP--TVVSETDFKEEPLVWTGAAEAYAERVLLTSNLDNQCLIK----- 1022

Query: 891  IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
            +  R  R P +GDKF+SR GQKG+  +    ED+PF+  G+VPD++ NPHG+PSRMT+G 
Sbjct: 1023 VLLRQTRRPELGDKFSSRHGQKGVVGLIVQQEDMPFSSEGIVPDLIMNPHGYPSRMTVGK 1082

Query: 951  L 951
            L
Sbjct: 1083 L 1083


>gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
 gi|5105547|dbj|BAA80860.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
          Length = 1169

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 242/950 (25%), Positives = 383/950 (40%), Gaps = 156/950 (16%)

Query: 95  EFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYY-PTEARQTRSVYSGPFNVTVAWSW 153
           E EI+   +K+   KA   EP   A  V   F++   P E R     YS P  V +    
Sbjct: 77  EHEIHLPDVKIVFGKARFKEPM--AREVIESFDRRVTPFECRVRGITYSAPLMVEMTIVQ 134

Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV--- 210
           D     T   ++   P+M+KS    L       +IE GE P + GGYFI+ G EK++   
Sbjct: 135 DNMIEKTREVKIADFPVMVKSVLDPLSKYDEETVIEMGEDPGDPGGYFIINGSEKVIVAQ 194

Query: 211 ------RLLINN------RRNHP-------IAIKRNAWKNRGLLFSDLGVYIRSVKRDES 251
                 R+++N       R  H        + ++R A  +R    SD G    S+ R   
Sbjct: 195 EDLAVNRIIVNKSTAATARITHTAKAVSTVLGLRRQAIVDR---MSD-GTLEASLSRLRY 250

Query: 252 ATNNVLHFVTNGSAR---FMFSHRKSMCLLGMMQSLHEEG---IHTQHDSKVFFGQIFKE 305
               V+     G  +    M +      +   M    E+G     T+ D+  + G     
Sbjct: 251 RIPLVVLLRALGLEKDMEIMLAVSADPDVQREMLPSLEKGRALAPTKEDALKYLGNRIAP 310

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
               D+R     E  D  L    LPHL    +D   K   L+ M  ++  +  G    D 
Sbjct: 311 GQPLDVRIRRAEEFLDTQL----LPHLGNRPEDRIKKAYFLAEMANRVLQLYLGKRGEDD 366

Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKES---------DIYAAF--RASSIESAM 410
           +D +  + +   G L  +L ++     +  + +           I   F  R + I   +
Sbjct: 367 KDFLGNKRLRLAGDLIAELFRESLEALANTMAQKLEEQLAERRQIRLDFLVRPTIISDRL 426

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRM-----RYMSHFRAVHRGSYFQEMRS 465
              +ATGN    +    Q +  + ++ +  ++ R+     R  +HF              
Sbjct: 427 KGAIATGNWGQDRTGISQQLDRTNWISLLSHLRRVISPLSRGQAHF-------------- 472

Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
            E R L    WG  CP  TP+G  CGL+ +L  +  IS  +   V+ +I  ++  LG+ P
Sbjct: 473 -EARDLHGSHWGRYCPFETPEGINCGLVKNLALSAYISVGVDESVVEEI--LVKDLGVAP 529

Query: 526 LTPVIQSI------PE---QALMVMLDGRIVGYILDQIATSLVPKLRML----KIVGEKI 572
           L  +++        PE   +   V ++GR +GY  +     L  K+R L    K+  E+ 
Sbjct: 530 LERILEEAKQAGEPPEIMLKGTKVFINGRPLGYHPN--GAELARKIRELRRSDKLEVER- 586

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAAGNIEW 617
           P  + + +L+      G    LY+ T  GR++RPV+                L+ G I +
Sbjct: 587 PWEVSVYHLRE-----GEIDELYVNTDSGRLMRPVVVVENGEPKLTREHVEKLSRGEITF 641

Query: 618 IGTFEQVFMDICITMKEAYPGIT----------THRELSKTDFLSNLANLIPMPDCNQSP 667
               +Q  +++    +E    I           TH EL     +   A  I   + NQSP
Sbjct: 642 WDLVKQGVVEMLDPEEEQNALIAELPWEVTKEHTHMELWVPAIVGVAAATIGYLEHNQSP 701

Query: 668 RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
           RN YQ  M KQ +G   LN+R +     Y LQ P  P  +    D +  +  P G N +V
Sbjct: 702 RNTYQAAMAKQALGVYALNYRIRLDSHSYLLQYPQVPIVQTRMLDIMGYNERPAGQNMVV 761

Query: 728 AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM- 786
           A++SYTGY++EDA+I NK S + G A    F+           Y G E  Y G +   + 
Sbjct: 762 AIMSYTGYNIEDALIFNKGSIDMGLARAYFFRV----------YTGIENEYPGGERDRIT 811

Query: 787 -----QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
                +   + G   Y +L        +T+   G     +    +   +G V   A +  
Sbjct: 812 LPKPDEVYDYRGAAAYAKLEADGIVAPETEVEGGEILIGRVSPPRFLGEGRVISMATVRR 871

Query: 842 RDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
           RD             +  R    E+  V++V +S+       V      +  R  R P +
Sbjct: 872 RDT-----------SIPMRLG--EKGVVDMVVISTTVERNKLVK-----VRVRNLRIPEI 913

Query: 902 GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GDKFASR GQKG+  + +P  D+P+T+ G+ PD++ NPH  PSRMT+G L
Sbjct: 914 GDKFASRHGQKGVIGMIFPRYDMPYTEEGIEPDVILNPHAIPSRMTVGQL 963



 Score = 47.8 bits (112), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L+ GY+    E MY G  G +++A I  GV +YQRL HMV+DK   +
Sbjct: 997  LKEGYDPNAREVMYDGRTGQIIEAPITIGVAYYQRLYHMVADKIHAR 1043


>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
 gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
          Length = 1224

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 240/931 (25%), Positives = 370/931 (39%), Gaps = 213/931 (22%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN----- 219
            +GR+P+ML+SK C+L + T + L +  E P + GGYFI+ G EK+   LI   R+     
Sbjct: 165  IGRLPVMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV---LIAQERSAGNIV 221

Query: 220  --------HPI---AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV------------ 256
                     PI   A  R+A +      S L V +    R+ S+T  +            
Sbjct: 222  QVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYG--RESSSTRTIKATLPYIKQDIP 279

Query: 257  -------LHFVTNGSARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQI 302
                   L  + +G    +  H   +C       +L M++   E+G   Q D +     I
Sbjct: 280  IVIIFRALGIIPDGE---ILEH---ICYDVNDWQMLEMLKPCVEDGFVIQ-DRETALDFI 332

Query: 303  FKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTCKLFHVVQGMVQ 358
             +      ++    ++    +L    LPH+         K   L +M  +L         
Sbjct: 333  GRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKD 392

Query: 359  LDSEDSIMLQEIMTGGSLYLQLLK-----------KEKSGTSAVLKESDIYAAFRASSIE 407
             D  D    + +   G L  QL K           +    T     + ++  A  A +I 
Sbjct: 393  QDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTIT 452

Query: 408  SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRS 465
            S +   LATGN    K +   +   +G   +++ +NR  Y S    + R +    ++ + 
Sbjct: 453  SGLKYALATGNWGEQKKA---MTSRAG---VSQVLNRYTYSSTLSHLRRTNTPIGRDGKL 506

Query: 466  SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLG 522
            ++PRQL    WG +CP  TP+G  CGL+ +L+    IS   + +P      I + L   G
Sbjct: 507  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMP------IITFLSEWG 560

Query: 523  MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLK 582
            M PL   +      A  V ++G  V + + +    L+  LR L+  G+  P+   I  ++
Sbjct: 561  MEPLEDYVPHQSPDATRVFVNG--VWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIR 618

Query: 583  RPEKGMGLYPGLYLFTGPGRMLRP---------------------VMNLAAGNIEWI-GT 620
              E        L +FT  GR+ RP                     V  L A   + I G 
Sbjct: 619  EQE--------LKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVARLMATEYQDIEGG 670

Query: 621  FEQV---------------FMD------ICITMK-----------EAYPGITT------- 641
            FE V               ++D      I I M+           EA P + T       
Sbjct: 671  FEDVEEYTWTSLLNEGLVEYIDAEEEESILIAMQPEDLDPVSDEPEAIPDVETDTAKRIR 730

Query: 642  ---------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
                     H E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +  
Sbjct: 731  AVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMD 790

Query: 693  GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
                 L  P  P       + L     P G NAIVA+  Y+GY+ ED+MI+N+SS +RG 
Sbjct: 791  TMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 850

Query: 753  AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
                 F+S +++ E  Y    TET       + +            R++H          
Sbjct: 851  FRSLFFRS-YMDQEKKYGMSITETFEKPQRTNTL------------RMKH---------- 887

Query: 813  YFGRDPANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKE 865
                        DKL  DGL+  G +++  D       P+    +E   R     Y  K 
Sbjct: 888  ---------GSYDKLDDDGLISPGVRVSGEDIIIGKTTPISPDEEELGQRTA---YHSKR 935

Query: 866  EMCVEVVRMSSGFTEGGSVTPN---CAYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWP 920
            +    +    +G  +   VT N     ++  R++  + P +GDKFASR GQKG   + + 
Sbjct: 936  DASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYG 995

Query: 921  AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             ED+PFT  G+VPD++ NPH  PSRMT+  L
Sbjct: 996  REDMPFTAEGIVPDLIINPHAIPSRMTVAHL 1026



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQIFFG  +YQRLRHMV DK   +
Sbjct: 1061 EHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1106


>gi|440631707|gb|ELR01626.1| DNA-directed RNA polymerase III subunit C2 [Geomyces destructans
            20631-21]
          Length = 1187

 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 229/924 (24%), Positives = 380/924 (41%), Gaps = 165/924 (17%)

Query: 126  FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
             N   P E R     Y+ P  V + +    +        +GR+PIMLKS +C L +    
Sbjct: 167  LNDVTPNECRLRDLTYAAPIFVDIKYVRGKRIVARRGIPIGRMPIMLKSSKCRLTSRNDG 226

Query: 186  QLIERGEHPDEWGGYFIVGGHEKLVRL---LINNR------------------------- 217
            QL    E   + GGYFIV G EK++ +   L  NR                         
Sbjct: 227  QLAYMNECALDPGGYFIVNGTEKVILVQEQLSKNRVIVETDAKKSMVSASVTSSTHERKS 286

Query: 218  RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFM------FSH 271
            +++ +  K   +    +L   + + I        + + +L  V    A +       F  
Sbjct: 287  KSYVVMKKERIYLQHNVLTEAVPIVIALKAMAVQSDHEMLLLVAGTDATYQDDFAVNFEE 346

Query: 272  RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPH 331
               + +    Q+L   G   +   K  FGQ  +     D             L N ++ H
Sbjct: 347  AAKLGIFSQQQALEWIGGRVKM-GKSRFGQPQRRNFAQDGLE---------ALANIVITH 396

Query: 332  LD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK 383
            +     D+  K L +  M  ++   +     +D  D +  + +   G L    +  L KK
Sbjct: 397  VPVVGLDFRPKALYVCFMVRRVLMAMHDPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKK 456

Query: 384  EKS----GTSAVLKESDIYAAFRASSIESAMTNFLATG---NVSAGKNSTLQL-MQASGF 435
              S        VLK+ +    F A     +  N++  G    +S G  S  +  M+ +G 
Sbjct: 457  FNSDLKMNIDKVLKKPNRTNEFDAYQHMQSHGNYITQGMNRAISTGNWSLKRFKMERAG- 515

Query: 436  VIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLL 493
              +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CGL+
Sbjct: 516  --VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLV 573

Query: 494  NHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
             +L     I+     + + ++  VL +  ++ ++   +   + A ++ ++G  +   L +
Sbjct: 574  KNLALMTHITTNDDEEPVRKLVFVLGAEDIVSMSGK-EIYDDGAYVIFINGTPLA--LTR 630

Query: 554  IATSLVPKLRMLKIVGEKIPKSLEIV--YLKRPEKGMGLYPGLYLFTGPGRMLRPVM--- 608
               + +   +  +  G    +  E V  Y+            +++ T  GR+ RP++   
Sbjct: 631  KPKAFLAGFKTFRRTG----RVSEFVSCYINHHTSS------VHIATDEGRICRPLIIVT 680

Query: 609  ---------NLAA--------------GNIEWIGTFEQVFMDICITMKE-AYPGITTHRE 644
                     +LAA              G +E+I   E+   D  I + E A    TTH E
Sbjct: 681  NGVPRIKDHHLAALRDGTMEFDDFLYRGLVEYIDCNEE--NDAMIALYENAITPATTHLE 738

Query: 645  LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
            +     L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P +P
Sbjct: 739  IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFARIDTLLYLMVYPQAP 798

Query: 705  FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
              +    + +  D  P G NAIVAV+SY+GYD+EDA++LN++S +RGF    + +     
Sbjct: 799  MVKTRTIELIRYDKLPAGQNAIVAVMSYSGYDIEDALVLNRASLDRGFGRCQVLRK---- 854

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR--DPANKA 822
                   Y T+ +                     +  +  +D+   +D+  R  D A   
Sbjct: 855  -------YATKLL---------------------KYANRSADRIGDRDFEVRASDGATVP 886

Query: 823  LEDK--LGPDGLVYVGAKLNERD-------PMYS--------YWKESENRYVTCRYSGKE 865
            +E    LG DGL +VG      D       P+ +          + S+ +  +  Y   +
Sbjct: 887  IEKHQLLGADGLAHVGEIARNGDVYVKKETPLNTSSTGIGSDSGRSSDMKDASMSYRLPD 946

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
               ++ + +S    E   +      +  R  R P +GDKF+SR GQKG+  +  PA+DLP
Sbjct: 947  PAYIDKIMISQTENESTVIK-----VQTRQTRRPELGDKFSSRHGQKGVVGLIAPAQDLP 1001

Query: 926  FTDSGLVPDIVFNPHGFPSRMTIG 949
            F DSG+ PDI+ NPHGFPSRMT+G
Sbjct: 1002 FADSGITPDIIMNPHGFPSRMTVG 1025



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 24/161 (14%)

Query: 741  MILNKSSYERG-FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFG 793
            ++  KS   RG   +G  F    +E      ++SGY Y G E + SG+ G  + A +F G
Sbjct: 1030 LLSGKSGVIRGTHEYGTCFGGSKVEEMGQGLVDSGYAYAGKEFLTSGITGEALPAYVFMG 1089

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
             ++YQ+L+HMV DK  ++    R    +   +     G + +G    ERD + +Y     
Sbjct: 1090 PIYYQKLKHMVQDKLHSRSRGPRAILTRQPTEGRSRQGGLRLGEM--ERDCLIAY----- 1142

Query: 854  NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
                     G  ++ +E + +SS   E   V   C  +GY+
Sbjct: 1143 ---------GASQLLLERLMLSSDAHE-VDVCERCGLMGYQ 1173


>gi|406863176|gb|EKD16224.1| DNA-directed RNA polymerase III polypeptide [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1214

 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 229/921 (24%), Positives = 367/921 (39%), Gaps = 171/921 (18%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
            P E R     Y+ P  V + +    +        +GR+PIML+S +C L       +   
Sbjct: 167  PNECRLRDLTYAAPIRVNIKYIRGKQVIHRTDIAIGRLPIMLRSSKCRLSGGDDHDMAHM 226

Query: 191  GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
             E   + GGYFIV G EK+            I ++    KNR ++ +D+   I S     
Sbjct: 227  NECALDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDVKKGIVSASVTS 274

Query: 251  SA----------------------TNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE- 287
            S                        N  +  V    A  + S  + + L+    S +++ 
Sbjct: 275  STHERKSKSYVLLKKERIVLQHNILNEAIPIVIALKALGIQSDHEMLLLVAGTDSTYQDD 334

Query: 288  -----------GIHTQHDSKVFFGQIFKEKLQYDL----RHLNEVEICDYMLTNCILPHL 332
                       G+ +QH +  + G   K   +       +  N V      L++ I+ H+
Sbjct: 335  FAVNFEECTKMGVFSQHQALEWIGTRVKMGSRKGTPGAPQRRNHVADALEALSSIIITHV 394

Query: 333  D----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE 384
                 D+  K L +  M  ++         +D  D +  + +   G L    +  L KK 
Sbjct: 395  PVHGLDFRPKALYICFMVRRVLMANHDPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKF 454

Query: 385  KS----GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQA 432
             S        VLK+ +    F A        + I   M   ++TGN S  +      M+ 
Sbjct: 455  NSDLKMNIDKVLKKPNRTMQFDAFNHLQSHGNHITQGMNRAISTGNWSVKRFK----MER 510

Query: 433  SGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPC 490
            +G   +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +CP  TP+G  C
Sbjct: 511  AG---VTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEAC 567

Query: 491  GL------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
            GL      + H+TTN  + E +   V       +VS+    +        + A +V ++G
Sbjct: 568  GLVKNLALMTHITTN-DLEEPVKKLVFVLGAEDIVSMSGKEI------YEDGAYVVFVNG 620

Query: 545  RIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
              +   L +     +   R  +  G ++   + I               +++ T  GR+ 
Sbjct: 621  TPLA--LTRKPKVFLNTFRRFRRAG-RVSAFVSIFINHHTN-------AVHIATDEGRIC 670

Query: 605  RPVM---------------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPG 638
            RP++                L AG            +E++   E+   +I +  KE    
Sbjct: 671  RPLIIVENQKSKVTRRSLEALRAGKMDFDDFLYRGFVEYVDVNEENDSNIALYEKE-IDE 729

Query: 639  ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
             +TH E+     L  +A LIP P  NQSPRN YQC MGKQ +G+   N   +    LY +
Sbjct: 730  TSTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGSIAYNQFSRIDTLLYLM 789

Query: 699  QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
              P  P  +    + +  D  P G NA VAV+SY+GYD+EDA++LNKSS +RGF    +F
Sbjct: 790  VYPQQPMVKTRTIELIHYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSCDRGFGRCQVF 849

Query: 759  KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
            +   I L+   N                          Y R+   V D+        +DP
Sbjct: 850  RKNMISLKKYPNR------------------------SYDRIGDRVLDE--------KDP 877

Query: 819  ANKALEDK-LGPDGLVYVGAKL-------NERDPMYSYWKESENRYVTCRY--SGKEEMC 868
            +    + + L  DG+  VG ++       N+  P+ +      + Y T  Y  +      
Sbjct: 878  SKPIAKHRILTSDGIAAVGERIFSGEVFCNKETPLNTISTGIGSDYGTNDYKPAPASYRA 937

Query: 869  VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
             +   +    T           +  R  R P +GDKF+SR GQKG+  +    ED+PF D
Sbjct: 938  YDFAYIDKVMTTQNDRDDTIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFAD 997

Query: 929  SGLVPDIVFNPHGFPSRMTIG 949
            SG+ PDI+ NPHGFPSRMT+G
Sbjct: 998  SGVCPDIIMNPHGFPSRMTVG 1018



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 18/156 (11%)

Query: 740  AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            A +LN +  Y   F    +     I +++G++Y G + + SG+ G  + A IFFG ++YQ
Sbjct: 1028 AGVLNGTLEYGTAFGGSNVDDMGAILIKNGFSYSGKDFVTSGITGEPLPAYIFFGPIYYQ 1087

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVT 858
            +L+HMV DK  ++    R    +   +    DG + +G    ERD + +Y          
Sbjct: 1088 KLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY---------- 1135

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
                G  ++ +E + +SS   E   +   C  +GY+
Sbjct: 1136 ----GASQLLLERLMLSSDAHE-VDICETCGLMGYQ 1166


>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
 gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
          Length = 1130

 Score =  217 bits (552), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 187/705 (26%), Positives = 304/705 (43%), Gaps = 134/705 (19%)

Query: 317 VEICDYMLTNCILPHLDD----YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMT 372
           +E    +L   +LPH+         K   +  M  +L  +  GM   D +D +  + I  
Sbjct: 293 IERAQAVLDENLLPHIGRGPAARISKAFFVGQMVSRLLELKLGMRGPDDKDHLANKRIRQ 352

Query: 373 GGSLYLQLLK-------KEKSGT----SAVLKESDIYAAFRASSIESAMTNFLATGNVSA 421
            G L  Q+ +       KE + +    ++  ++ ++ +  R   I   + + LATGN   
Sbjct: 353 AGELIAQVFRSAFRQLVKEMTYSIERHTSKTRDINLVSIVRPDIITERLNHALATGNWVG 412

Query: 422 GKNSTLQLMQASGFVIMAENINRM-----RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
           G+    Q++  + ++    ++ R+     R   HF               E R+L    W
Sbjct: 413 GRTGVSQILDRTNYLSTISHLRRVVSPLSRTQPHF---------------EARELHPTQW 457

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ 536
           G +CPV +P+G  CGL+ HL     +S     K   Q+  +LV  G L + PV +++ + 
Sbjct: 458 GRLCPVESPEGQNCGLVKHLALLATLSNGTDEK---QVYDLLV--GRLGVVPVEKTVGKN 512

Query: 537 --ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG- 593
                V L+GR++GY+ D     L   LR L+  G +I   + + +    E  +G   G 
Sbjct: 513 ISGARVYLNGRLIGYVED--GKGLAETLRKLRREG-RISHEVNVAFYSH-EYTVGGVKGR 568

Query: 594 ---LYLFTGPGRMLRPVMNLAAGN--------------------------IEWIGTFEQV 624
              +Y+    GR+ RP++ +  G                           +E++   E+ 
Sbjct: 569 IEEVYVNCDAGRIRRPLIVVENGEPRLKHEHVELLRKGEWTWSDLIENGIVEYLDAEEEE 628

Query: 625 FMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
              I   + E  P   TH E+     L  +A  IP  + NQSPRN YQ  M KQ++G P 
Sbjct: 629 NAYIATDVSELTPQ-HTHLEIVPAAILGIIAMTIPFIEYNQSPRNSYQAAMAKQSLGIPH 687

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
            N++ +   +++ +  P  P  +   +D L +DN P GTN +VAV++  GY+++DA+++N
Sbjct: 688 YNFKLRMDPRMHVMYYPQKPLVKTRIFDLLPLDNLPYGTNMVVAVLTGGGYNIQDAVVIN 747

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           K++ ERG +    F++          Y   E  Y G                       +
Sbjct: 748 KAAIERGMSRSVFFRT----------YEAEERRYPG----------------------GL 775

Query: 805 SDKWQT----KDYFGRDPANKALEDKLGPDGLVYVGAKL-------NERDPMYSYWKESE 853
            D+++     KD     P  +A E     DG+ YV A+L       +   P   Y    E
Sbjct: 776 EDRFEKPSLEKDLLDVKPP-QAYEAIDPVDGIAYVEAELYGGQAVVSRTSPPRFYTSTLE 834

Query: 854 NRYVTCRYS-------GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFA 906
            R +T R         G++ +   V  M S    GG      A +  R  R   +GDKFA
Sbjct: 835 PRVMTKRKDTSLLLRHGEKGIIDRVFIMES---PGGI---KLAKVRVRDLRPTELGDKFA 888

Query: 907 SRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           SR GQKG+  +  P ED+PFT+ G+ PD++ NPH  PSRMT+G L
Sbjct: 889 SRHGQKGVVGMLVPQEDMPFTEEGITPDLIINPHAIPSRMTVGQL 933



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 66  LTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIH 125
           L L   H+ SF+  L+ GL   V+++  I+ E  G  +K    K  + +P       G  
Sbjct: 26  LGLVRQHLDSFNAFLERGLQEIVDEVGGIKVESQGVEIKFG--KIEVGQPTFREAD-GSD 82

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL-TP 184
                P  AR     Y+ P  +T+    DG+   T +  +G +PIM+KSK+C L  L + 
Sbjct: 83  L-ALTPMIARLRNITYAAPLYLTMTLYVDGEERRTESVYIGSLPIMVKSKKCVLYGLKSE 141

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV 210
            ++++ GE P + GGYFIV G E+++
Sbjct: 142 DEIVKYGEDPYDPGGYFIVNGSERVI 167



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+   G E +Y GV G  ++A+IF GVV+Y++L H+V+DK   +
Sbjct: 970  GFRSDGKEVLYDGVTGEKLEAEIFIGVVYYEKLHHLVADKMHAR 1013


>gi|154277042|ref|XP_001539366.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
           capsulatus NAm1]
 gi|150414439|gb|EDN09804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
           capsulatus NAm1]
          Length = 1186

 Score =  217 bits (552), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 240/924 (25%), Positives = 387/924 (41%), Gaps = 188/924 (20%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  V   +    +        +GR+P+ML+S +C L N + A++   
Sbjct: 149 PNECRLRDMTYAAPILVDFEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQLL 208

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
            E P + GGYFIV G EK+            I ++    KNR ++ +DL   I       
Sbjct: 209 QECPLDPGGYFIVNGTEKV------------ILVQEQLSKNRVIVETDLKKDIVQASVTS 256

Query: 251 SAT------------------NNVLH----FVTNGSARFMFSHRKSMCLLGMMQSLHEE- 287
           S+                   +NVL      V    A  + S ++ + L+  + S  +E 
Sbjct: 257 SSNERKSKSYIILKKDRIYMRHNVLSEDVPIVILLKAMGIQSDKEMLLLVAGIDSTFQED 316

Query: 288 -----------GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD 333
                      GI+TQH +  + G   +I ++   + +   N V+     +++ I+ H+ 
Sbjct: 317 FAINFEESVKLGIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVV 376

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-- 383
               ++  K L ++HM  ++         +D  D +  + +   G L    +  L KK  
Sbjct: 377 VENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQ 436

Query: 384 --EKSGTSAVLKES------DIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
              K     VLK+       D Y   A   + I   M   ++TGN S  +      M+ +
Sbjct: 437 FDIKMNIDKVLKKPVRTEQFDAYGVVAIHGNHITQGMNRAISTGNWSLKRFR----MERA 492

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   +   ++R+ Y++    + R  S F++ R  S PR L+   +G +CP  TP+G  CG
Sbjct: 493 G---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACG 549

Query: 492 L------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLD 543
           L      + H+TTN    E  P + L      + +LG   +  V   +   + A ++ L+
Sbjct: 550 LVKNLALMTHITTN---DEEQPVRKL------IFALGAEDVQTVGGRELHGQGAYIIFLN 600

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  +   L +     +   R L+  G ++ + +  V++   +        +++ T  GR+
Sbjct: 601 GSPIA--LTRRPKFFLNSFRRLRRTG-RVSEFIS-VFINHHQNA------VHVATDDGRI 650

Query: 604 LRPVMNLAAG----------NIEWIGTFEQVFMDICITMKEAYPGITTHRE--------- 644
            RP++ +  G             W+     V   I I M++    I  + E         
Sbjct: 651 CRPLIIVEDGKSNERDDGNSTTSWL----MVSWSIWIVMRKTTSYIAVYEEDRLRARRIW 706

Query: 645 -LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
             ++  F +    LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  
Sbjct: 707 KSNRLPFSALWPGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVYPQK 766

Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
           P  +    + +  D  P G +A VAV+SY+GYD+EDA++LNK S +RGF    +F+    
Sbjct: 767 PMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYST 826

Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-A 822
            L+S  N  GT+                              DK +  D     P  K A
Sbjct: 827 NLKSYSN--GTK------------------------------DKLKGPDRENGVPIRKHA 854

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY---VTCRYSGK--------------E 865
           L D    DGL  VG K+N  + +Y      EN     +T   +G+              +
Sbjct: 855 LLDN---DGLAAVGEKVNHGE-VYINKVTPENALSSGITGSDAGRPIAYIPSPQTYKLPD 910

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              ++ V +S+   E   +      +  R  R P VGDKF+SR GQKG+  +     D+P
Sbjct: 911 PSYIDKVMISATEAENQLIK-----VQTRQTRVPEVGDKFSSRHGQKGVVGIIAEHADMP 965

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIG 949
           F+D G+VPDI+ NPHGFPSRMT+G
Sbjct: 966 FSDLGIVPDIIMNPHGFPSRMTVG 989



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 23/148 (15%)

Query: 752  FAHGCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            F +G  F    +E      ++ G++Y G + + SG+ G  + A +F G ++YQ+L+HMV 
Sbjct: 1006 FGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQ 1065

Query: 806  DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            DK  ++    R    +   +    DG + +G    ERD + +Y              G  
Sbjct: 1066 DKMHSRARGPRAILTRQPTEGRSRDGGLRLGEM--ERDCLIAY--------------GTS 1109

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            ++ +E + +SS   E   V  NC ++GY
Sbjct: 1110 QLLLERLMISSDRHE-VDVCENCGFMGY 1136


>gi|401827970|ref|XP_003888277.1| RNA polymerase subunit beta [Encephalitozoon hellem ATCC 50504]
 gi|392999549|gb|AFM99296.1| RNA polymerase subunit beta [Encephalitozoon hellem ATCC 50504]
          Length = 1110

 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 250/997 (25%), Positives = 412/997 (41%), Gaps = 215/997 (21%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+D+ +D  +   V     ++ +I   T  L  +   +  P V    V  +    +P
Sbjct: 23  HIESYDYFVDHEIKALVRANQIVDSDI-DHTFYLKYLDIRVGMPSVEENMVNYNV---FP 78

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN---------- 181
            E R     YS    V + +  + +        +G++P+ML+S RCHLR           
Sbjct: 79  IECRLRDMTYSANIYVDIEYVRNRQIIVKRDVCIGKMPVMLRSSRCHLRKEAKISIEGNR 138

Query: 182 LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGL------- 234
               ++ E  E P + GGYFI+ G E++            I I+    KNR +       
Sbjct: 139 AKDRKIKESQECPLDVGGYFIIRGIERV------------ILIQEQLSKNRIIIESGPKG 186

Query: 235 LFSDLGVYIRSVKRDESAT-NNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQH 293
           LF+ +       K   S T  +  +++ N     MF+    + ++     L ++    + 
Sbjct: 187 LFASVTSSTDEHKSKTSVTIKDDCYYLKNS----MFNEEIPVVIVMKALGLTQDKEIAEC 242

Query: 294 DSKVFFG------------QIF--KEKLQYDLRHL------NEVEICDYMLTNCILPHLD 333
             K +F             ++F  ++ L Y   ++      N +E    +L+  +LP++ 
Sbjct: 243 VGKEYFDIMVPSFGECISKEVFTKEQALLYISNYIKLRPEDNRIEEVLTILSEKVLPNVQ 302

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------ 383
               +   K + ++ M  +L      +++ D +D +  +     G L   L +       
Sbjct: 303 VEGCNLRKKGIYIALMIRRLTQTRLNILKEDDKDFVGNKRFELAGQLLSILFEDTFKRFN 362

Query: 384 ---EKSGTSAVLKESD-------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
              +KS    + K S         +   +A+ I S ++  ++TGN +  +      M+ S
Sbjct: 363 FELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLSRAISTGNWNLKRFR----MERS 418

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   +   ++R  Y+S    + +  S+F++ R  S PR L T +WG +CPV TP+G  CG
Sbjct: 419 G---VTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCG 475

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM--VMLDGRIVGY 549
           L+ +L     ++E      +  +  ++  LG++ +  V      Q  M  V L+G I+G 
Sbjct: 476 LVKNLAL---LAEITTDSDVRPVLDLIFKLGVVDINSVYTREIHQNGMFSVFLNGDIIG- 531

Query: 550 ILDQI-----------ATSLVPKL-------------------RMLK------------- 566
           I+D++              LV K                    R+ +             
Sbjct: 532 IIDKVDFFVEQFKLHRRKGLVGKFVSIYKVMTERVIHIASDNGRVCRPLIVIDKKKINRM 591

Query: 567 IVGEKIPKSLEIVYL-KRPEKGMG-LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV 624
           IV  +I K  E++ + +RPE   G  +   YL       L     L  G IE++   E+ 
Sbjct: 592 IVSNEIDKCFEVLNISERPEMERGKTFLDCYLKYKSFSDL-----LEEGFIEYLDVNEE- 645

Query: 625 FMDICITMK-EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
             D  + +K E     TTH E+S+   L  +A L+P P  NQSPRN YQC MGKQ +G  
Sbjct: 646 -NDCLVALKPEDMVEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMGKQAIGHI 704

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
            LN + +    + +L     P       D ++ +  P G NA+VAV+SY+GYD+EDA++L
Sbjct: 705 SLNVKKRFDPVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYDIEDALVL 764

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           NK+S ERG     ++K+             T T+       M                  
Sbjct: 765 NKTSIERGLFRVEVYKT-------------TTTLLKKHSSGM------------------ 793

Query: 804 VSDKWQTKDYFGRDPANKAL-EDKLG------PDGLVYVGAKLNERDPMYSYWKESENRY 856
                   D    +P    L ED LG       DG +YV    N+  P+   +K      
Sbjct: 794 -------SDVLWPNPKESVLDEDGLGKPGRMVKDGTIYV----NKMSPVEGIYK------ 836

Query: 857 VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI----GYRIQRNPTVGDKFASRAGQK 912
               ++GK      V R    + +   +T +   +      R  R P +GDK +SR GQK
Sbjct: 837 ----FTGK------VHRGDPAYIDKVLITKSQDQVLIKTMLRQTRPPEIGDKLSSRHGQK 886

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           G+  +    ED+PF D G+VPDI+ NPHGFPSRMT+G
Sbjct: 887 GVVGLIVRQEDMPFNDQGIVPDIIMNPHGFPSRMTVG 923



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 9/136 (6%)

Query: 719  FP--MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
            FP  M    I+ +IS     ME  +  + +  E      C   S       G++Y G + 
Sbjct: 916  FPSRMTVGKIIELISGKAGLMEGKIFDSTAFKENSVEETCNILS-----RHGFSYSGKDC 970

Query: 777  MYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVG 836
              SG  G+ + A IFFG V YQRL+HMV+DK   +    R    +   +    DG + +G
Sbjct: 971  FTSGTTGAPLTAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLG 1030

Query: 837  AKLNERDPMYSYWKES 852
                ERD +  Y   S
Sbjct: 1031 EM--ERDCLIGYGASS 1044


>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
          Length = 1083

 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 202/700 (28%), Positives = 304/700 (43%), Gaps = 131/700 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 251 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 310

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 311 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 367

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 368 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 420

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 421 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 476

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 477 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 527

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 528 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 587

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 588 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 647

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 648 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 707

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 708 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 751

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVT 858
                             A+ DKL  DGL+  G +++  D + S        E E     
Sbjct: 752 ------------------AIYDKLDDDGLIAPGVRVSGDDVIISKTVTLPENEDELESTN 793

Query: 859 CRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQ 911
            RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFASR GQ
Sbjct: 794 RRYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRHGQ 850

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 851 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 890



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 928 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 971



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 134 ARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPAQLI 188
           AR     YS P  V +  +   +       +     +G++PIML+S  C L  LT   L 
Sbjct: 22  ARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLC 81

Query: 189 ERGEHPDEWGGYFIVGGHEKLV 210
           E  E P + GGYFI+ G EK++
Sbjct: 82  ELNECPLDPGGYFIINGSEKVL 103


>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
           carolinensis]
          Length = 1174

 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 205/704 (29%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG ICP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMICP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKGIAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IKVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVVKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L +  E P + GGYFI+ G EK++
Sbjct: 170 DLCQLNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|294950795|ref|XP_002786777.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Perkinsus marinus ATCC 50983]
 gi|239901131|gb|EER18573.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Perkinsus marinus ATCC 50983]
          Length = 1140

 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 226/878 (25%), Positives = 365/878 (41%), Gaps = 157/878 (17%)

Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRL---LINNRRNHP 221
           VGR+PIML+SK C L + T  Q+    E P + GGYFI+ G EK++ +   L NNR    
Sbjct: 140 VGRLPIMLRSKLCRLHDATTEQMERMQECPHDPGGYFIIKGTEKVLLMQEQLSNNRIIVE 199

Query: 222 IAIKR------------NAWKNRGLLFSDL-GVYIRSVKRDESATNNVLHFVTNGSARFM 268
           +  K+            N  +      S+L G++++      SA   ++  V    A  M
Sbjct: 200 MDPKKLVQAVVTSSTADNKSRTVVCFKSELSGLFVK-----HSAFTELIPAVIMLRAMGM 254

Query: 269 FSHRKSMCLLGM-----------MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEV 317
            S ++ + ++G            +Q  H  G+ +Q  +  + G   K ++  D    +  
Sbjct: 255 ESDQEIVQMVGTEKCHVDGMILSLQDAHATGVFSQQQALEYLGNKLKIRMYADGSFSSAF 314

Query: 318 EICDYMLTNCILPHLDDYWDK--FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
           +      T  +     D+  K  FLCL  M  +          LD  D    + +   G 
Sbjct: 315 DQDKGGATKPL-----DFSGKCRFLCL--MMRRALDARSDSTLLDDRDYYGNKRLELAGQ 367

Query: 376 LYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQL------ 429
           L   L +      +  +K+S          ++  +T F    + +    ST+ L      
Sbjct: 368 LIALLFEDLFKSMNTEIKKS----------VDMRLTKFFQQTSSARAGRSTVGLDSGYPD 417

Query: 430 --MQASGFVI--------MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWG 477
             ++A+G +         +++ ++R  +++   A+ R  S F++ R  + PR L+   WG
Sbjct: 418 VLLRATGNIKRFRIDRSGVSQVLSRFSFIAALGAMTRVKSQFEKSRKLAGPRALQPSQWG 477

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA 537
            +CP  TP+G  CGL+  L+    ++   P +    I  +  SLG+     +       A
Sbjct: 478 MLCPSDTPEGEQCGLIKALSLLAHVT--TPDEE-GPIRRLCYSLGVEDAAGLTGEELHSA 534

Query: 538 --LMVMLDGRIVG-YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGL 594
             + V L+G ++G +   Q   S +  LR    +GE +      +Y    ++       +
Sbjct: 535 GTITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIGEFVS-----IYEHEAQRA------I 583

Query: 595 YLFTGPGRMLRPVMNLAAGN---------------------------IEWIGTFEQVFMD 627
            + T  GR+ RP++ +  G                            IEW+   E+    
Sbjct: 584 IIATDGGRLCRPLIVVKKGKPMLKPEVHLRKLRSGELRFTDFLRLGIIEWVDVNEENNSY 643

Query: 628 ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           I I   E     +TH E+     L  +A L+P P  NQSPRN YQC MGKQ MG    N 
Sbjct: 644 IAIN-PEDVTMESTHLEIEPLTLLGAVAGLVPYPHHNQSPRNTYQCAMGKQAMGNIACNQ 702

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +   +L  L  P  P  +    D +  DN P G NA VAV+SY+GYD+EDA+I+NK+S
Sbjct: 703 HLRTDTQLLLLTYPQQPMCKSRTIDLIGYDNLPAGHNASVAVMSYSGYDIEDALIMNKAS 762

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            +RGF   C+ +            Y T    S +  S    +                  
Sbjct: 763 IDRGFGRCCVTRK-----------YATPLARSAIGSS----EELRAPPVVGGGGKGGGRH 807

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAK-------LNERDPM-------YSYWKESE 853
            +   + GR      +++    DGL + G +       +N+  PM        S+W+++ 
Sbjct: 808 QRQGGFVGRAKKYAIIDE----DGLPFSGEQVVDGGILINKVSPMSDAATGQVSHWRDTP 863

Query: 854 NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKG 913
             Y       K  +   V R+ +   E  +    C     R  R P +GDKF+SR GQKG
Sbjct: 864 ISY-------KNPVPSYVDRVIATENEDQAKIFKCI---TRQTRRPELGDKFSSRHGQKG 913

Query: 914 ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +  +    ED+PF + G  PD++ NPHGFPSRMT+G L
Sbjct: 914 VVGLIVNQEDMPFGEKGWCPDLIMNPHGFPSRMTVGKL 951



 Score = 43.5 bits (101), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 19/131 (14%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  G++    E + SGV G  ++  IF G ++YQ+L+HMV DK   +     +   +   
Sbjct: 985  IRHGFHPSAKEYITSGVTGEALECYIFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPT 1044

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG-FTEGGS 883
            +    DG + +G    ERD + +Y              G   + +E + +SS  FT   S
Sbjct: 1045 EGRAKDGGLRLGEM--ERDCLVAY--------------GASNLLLERLMLSSDVFT--AS 1086

Query: 884  VTPNCAYIGYR 894
            V   C  + Y+
Sbjct: 1087 VCRRCGLLSYQ 1097


>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
           japonicus yFS275]
 gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
           japonicus yFS275]
          Length = 1160

 Score =  216 bits (551), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 242/979 (24%), Positives = 404/979 (41%), Gaps = 174/979 (17%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEI----YGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           H+ S+++ +D  L   VE    I  ++    Y K L + + +   ++       +     
Sbjct: 62  HLDSYNYFVDVDLKKIVEANQKITSDVEPWFYLKYLDIRVGQPVRTDLDAIQHSIS---- 117

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQL 187
              P E R     Y     V + ++   +        +GR+P+ML+S +C L   +  +L
Sbjct: 118 ---PHECRLRDLTYGANIFVDIEYTRGRQVVRRRNVPIGRMPVMLRSNKCVLYGKSEKEL 174

Query: 188 IERGEHPDEWGGYFIVGGHEKLVRL---LINNRRNHPIAIKRNAW-----------KNRG 233
               E P + GGYF+V G EK++ +   L  NR        +  W           K++ 
Sbjct: 175 AALNECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVEAEPSKEMWQASVTSSTHERKSKT 234

Query: 234 LLFSDLG-VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEE----- 287
            + +  G +Y++      ++ N  +  V    A  + S R+   L+   ++ +++     
Sbjct: 235 YVVTKNGRLYMK-----HNSVNEDIPIVIALKAMGLQSDREIFELVAGSEANYQDLFAPS 289

Query: 288 -------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
                   ++T   +  + G   K   +     L   E    +L   +L H+     D+ 
Sbjct: 290 VEEAAKLNVYTTEQALNYIGSHVKVNRRAGAARLPPHEEALEVLAAVVLAHISVVNLDFR 349

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS----GT 388
            K + ++ M  ++   +    Q+D  D +  + +   G L    +  L KK  S      
Sbjct: 350 PKAVYVAMMARRVLMAMVDPSQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNI 409

Query: 389 SAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
             VLK+ +    F A          I   M   L+TGN S  +      M+ +G   +  
Sbjct: 410 DKVLKKPNRTQEFDAYNQLSMHGDHITQGMVRALSTGNWSLKRFK----MERAG---VTH 462

Query: 441 NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
            ++R+ ++S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL+ +L  
Sbjct: 463 VLSRLSFISALGMMTRITSQFEKTRKVSGPRSLQPSQFGMLCTSDTPEGEACGLVKNLAL 522

Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI--QSIPEQALMVMLDGRIVGYILDQIAT 556
              I+       L ++     + G+  +  V   + + + + +V ++G I+G  + +  +
Sbjct: 523 MTHITTDEEEGPLIRLA---YAFGVEDVHTVTGREILAQDSYLVYINGSILG--ITRYPS 577

Query: 557 SLVPKLRMLK-------IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM----LR 605
             V   R L+        VG  I +    V++   + G    P + +  G  R+    +R
Sbjct: 578 RFVSCFRRLRRSGRISPFVGIFINEHQRAVFIS-ADGGRICRPLIVVENGLPRVTNEHIR 636

Query: 606 PVMN--------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANL 657
            + N        L AG +E++   E+    I +  K+  P  TTH E+     L  +A +
Sbjct: 637 KLKNGEMVFEDFLKAGYVEYVDVNEENDSLIAVYEKDIAPD-TTHLEIEPFTILGAVAGV 695

Query: 658 IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
           IP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +    + +  D
Sbjct: 696 IPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYD 755

Query: 718 NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
             P G NA+VA++SY+GYD+EDA++LNK+S +RGF    +F                   
Sbjct: 756 KLPAGQNAMVAIMSYSGYDIEDALVLNKASLDRGFGRCQVFHK----------------- 798

Query: 778 YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFG---RDPAN-------KALEDKL 827
                             H   +R   +    T D  G   RDP N       K LED  
Sbjct: 799 ------------------HSAIIRKYPNG---THDRIGDPQRDPENGKVIWKHKILED-- 835

Query: 828 GPDGLVYVGAK-------LNERDPMYSY----------WKESENRYVTCRYSGKEEMCVE 870
             DGL  VG +       +N++ P  +             ES  R     Y   E   ++
Sbjct: 836 --DGLAGVGCQVQSGQVYINKQTPTNALDNTIALGQPQTTESGYRATPMTYKAPEPAYID 893

Query: 871 VVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSG 930
            V +++   +   V      +  R  R P +GDKF+SR GQKG+C V    ED+PF D G
Sbjct: 894 KVMLTNSDADQTLVK-----VLTRQTRRPELGDKFSSRHGQKGVCGVIIQQEDMPFNDIG 948

Query: 931 LVPDIVFNPHGFPSRMTIG 949
           + PDI+ NPHGFPSRMT+G
Sbjct: 949 ICPDIIMNPHGFPSRMTVG 967



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 17/132 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E GYNY G + + SG+ G  ++A IFFG ++YQ+L+HMV DK   +    R    + 
Sbjct: 1001 ILVEHGYNYSGKDMLTSGITGEQLEAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1060

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1061 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMLSSDAFE-V 1103

Query: 883  SVTPNCAYIGYR 894
             V  NC  +GY+
Sbjct: 1104 DVCENCGLLGYK 1115


>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
          Length = 1175

 Score =  216 bits (550), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 238/936 (25%), Positives = 389/936 (41%), Gaps = 174/936 (18%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV----------GRVPIMLKSKRCHL 179
           +P EAR     Y+ P  V +    D       ++EV          G VPIML+S  C+L
Sbjct: 108 FPKEARLRNLTYAAPLYVDIERR-DKVVHSDGSEEVEVTPYPKVFLGDVPIMLRSDYCNL 166

Query: 180 RNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---RLLINN-----RRNHP-----IAIKR 226
              +   L + GE P + GGYF++ G EK++     + NN     R++ P     +A  R
Sbjct: 167 SGRSERDLCDLGECPYDQGGYFVINGSEKVLIAQERMANNHVYVFRKSQPSKYAYVAECR 226

Query: 227 NAWKNRGLLFSDLGVYIRSVKRDESATNNV-------------------LHFVTNGS--A 265
           +  +      S + V + S    + A   +                   L FV +     
Sbjct: 227 SVVEGSTRTVSTMQVKMLSRAGQKGAGQCIRASIPYVRADIPILIIFRALGFVADKDILE 286

Query: 266 RFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLT 325
             ++    +  +  +  S+ EE    Q   +V    I K            ++    +L 
Sbjct: 287 HIVYDFGDTTMMEALRPSI-EEAFPIQ-SQEVALDYIGKRGSTIGATRNARIQYARELLQ 344

Query: 326 NCILPH--LDDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLY 377
             +LPH  ++++ +  K     ++  +L  V  G  + D  D    + +  GG    +L+
Sbjct: 345 KELLPHVGMEEFCETKKAYFFGYVIHRLLLVALGRREEDDRDHYGNKRLDLGGPLLANLF 404

Query: 378 LQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGN---VSAGKNSTL 427
            QL +K        +       KE ++ +A    +I   +   LATGN   V AG+    
Sbjct: 405 RQLFRKLSKDVRGYVQKCVDKGKEINLTSAINKDTITRGLRYSLATGNWGVVGAGEVRPG 464

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
                     +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG ICP  T
Sbjct: 465 ----------VSQVLNRLTYASTLSHLRRIN-SPIGREGKIAKPRQLHNSQWGMICPAET 513

Query: 485 PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
           P+G  CGL+ +L     IS    S  +        +  +  ++P   S+  +A  + ++G
Sbjct: 514 PEGQACGLVKNLALMTYISVGCASNPVLDFLQEWATEDLEEISP---SVIPKATKIFVNG 570

Query: 545 RIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML 604
             VG   D    +LV  LR ++   + I   + +V+  R ++       L L+T  GR  
Sbjct: 571 VWVGIHRD--PQTLVETLRAMRRQVD-ISTEVGVVHDIRLQE-------LRLYTDYGRCC 620

Query: 605 RP---------------VMNL--------------AAGNIEWIGTFEQVFMDICITMKE- 634
           RP               ++NL               AG IE++   E+    I + + + 
Sbjct: 621 RPLFIVEDQAVKVKKRDIINLQNREETGFTWQSMIEAGYIEYVDVEEEETTMIAMFINDL 680

Query: 635 ------------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
                       +   + TH E+     L   A+++P PD NQSPRN YQ  MGKQ MG 
Sbjct: 681 RLARIAEDAATASSIALYTHCEIHPAMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGM 740

Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
              N++ +   + Y L  P  P     + + L     P G N IVA+  Y+GY+ ED+ +
Sbjct: 741 YVTNYQVRMDTQGYVLFYPQKPLVTTRNMEYLHFRELPAGINTIVAIACYSGYNQEDSTM 800

Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           +N+SS +RG     IF+S+F      +  Y TE       GS++Q  I       +R   
Sbjct: 801 MNQSSIDRG-----IFRSIF------FRSYKTEEKKQ---GSLVQESI-------ERPNR 839

Query: 803 MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK--ESENRYVTCR 860
            ++   +   Y           DKL  DG+   G +++  D +         +   +  R
Sbjct: 840 EITAGTRHGTY-----------DKLDDDGIAPPGTRVSGDDIVIGKTSPIPDDGSGLPQR 888

Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGIC 915
           YS K++    +    SG  +   VT       ++  R++  R P VGDKFASR GQKG  
Sbjct: 889 YS-KKDASTALRHSESGMIDSVLVTTGADGQRFVKMRVRSVRIPQVGDKFASRHGQKGTI 947

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            + +  ED+PF+  G+ PD++ NPH  PSRMTIG L
Sbjct: 948 GITYTQEDMPFSAEGISPDLIINPHAIPSRMTIGHL 983



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G E MY+G  G  +QAQIF    +YQRL+HMV DK  ++   GR P  
Sbjct: 1020 GYQSRGWEVMYNGHTGRQLQAQIFLNPTYYQRLKHMVDDKIHSR---GRGPVQ 1069


>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Loxodonta africana]
          Length = 1010

 Score =  216 bits (550), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 178 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 237

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 238 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 294

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 295 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 347

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 348 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 403

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 404 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 454

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 455 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 514

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 515 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 574

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 575 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 634

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 635 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 678

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 679 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 720

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 721 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 773

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 774 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 817



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           E GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 853 EYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 898


>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
          Length = 1174

 Score =  216 bits (550), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q +IF        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEIFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      +S N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMT+G L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHL 981



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSW--DGKAGGTFTKE---VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   DG+       +   +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1017 EYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSR 1062


>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
           domestica]
 gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
           harrisii]
          Length = 1174

 Score =  216 bits (549), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
           rotundus]
          Length = 1144

 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 312 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 371

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 372 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 428

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 429 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 481

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 482 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 537

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 538 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 588

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 589 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 648

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 649 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 708

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 709 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 768

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 769 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 812

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 813 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 854

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 855 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 907

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 908 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 951



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 80  PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 139

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 140 DLCELNECPLDPGGYFIINGSEKVL 164



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 989  GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1032


>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
          Length = 1174

 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYKTTGWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGKEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
            var. grubii H99]
          Length = 1245

 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 252/974 (25%), Positives = 381/974 (39%), Gaps = 204/974 (20%)

Query: 127  NKYYPTEARQTRSVYSGPFNVT--------------VAWSW------DGKAGGTFTKE-- 164
            N  +P EAR     YS P  V               V   W      DG+  G   ++  
Sbjct: 133  NMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGEVEGAEEEKTS 192

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            +G+VP+M++S  C L  L   Q  E GE P + GGYFI+ G EK++        NH    
Sbjct: 193  IGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVF 252

Query: 225  KR------------NAWKNRGLLFSDLGVYIRSVKRDESATNNVLH-------------- 258
             +            N+ K +G   ++    +R   R    T  V+               
Sbjct: 253  LKAAPARFTYFAEINSQKEKGGRVAN-HTEVRMYARASGTTGGVIRVSLPYTKVDIPLVV 311

Query: 259  -FVTNG--SARFMFSH----RKSMCLLGMMQSLHEEGIHTQ-HDSKVFF----GQIFKEK 306
             F   G    R + SH     +   LL M+Q   EE    Q  D+ + F    GQ   EK
Sbjct: 312  VFRALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQ--HEK 369

Query: 307  LQYDLRHLNEVEICDYMLTNCILPHLDDYW----DKFLCLSHMTCKLFHVVQGMVQLDSE 362
                 R     +I    L    LPH+         K   L +M  +L     G  +LD  
Sbjct: 370  APRAQRQRAAFDI----LHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDR 425

Query: 363  DSIMLQEIMTGGSLYLQLLK----KEKSGTSAVLK-------ESDIYAAFRASSIESAMT 411
            D    + +   G L  ++      K +      LK       E  +  A R ++I   + 
Sbjct: 426  DHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNKEFALNMAIRPNTITDGLK 485

Query: 412  NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPR 469
              LATGN     N+   + Q          +NR  + S    + R +    ++ ++++PR
Sbjct: 486  YALATGNWGKRDNTRAGVSQV---------LNRYTFTSTLSHLRRTNTPIGRDSKAAKPR 536

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP-SKVLAQIPSVLVSLGMLPLTP 528
            QL    WG +CP  TP+G+ CGL+     N  +  YI      A +   L   G+  L+ 
Sbjct: 537  QLHNTHWGMVCPAETPEGSACGLVK----NLALMSYISVGSYSAPVMEFLEEWGLEDLSE 592

Query: 529  VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGM 588
              Q  P  A  V ++G  +G   D  A +L   L  ++  G ++   + IV   R E+ +
Sbjct: 593  Y-QDAP-TATKVFVNGVWMGIHRD--APTLHNNLLQMR-RGGQLKYEVSIVRDIR-EREL 646

Query: 589  GLYPG-------LYLFTGPGRMLRPVMN---------------------LAAGNIEWIGT 620
             LY         L++   P + LR   +                     L+ G +E++  
Sbjct: 647  RLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLLSEGIVEYVDA 706

Query: 621  FEQVFMDICITMKEAYPGIT----------------------------------THRELS 646
             E+  + I +T ++     T                                  TH E+ 
Sbjct: 707  AEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIH 766

Query: 647  KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
             +  L   A++IP PD NQSPRN YQ  MGKQ MG    N++ +    +  L  P  P  
Sbjct: 767  PSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLA 826

Query: 707  RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
                 + L     P G NAIVA++ Y+GY+ ED++I+N+SS +RG     +F+S++    
Sbjct: 827  TTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRG-----LFRSLYFR-- 879

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
               +Y  TE M   V    ++       +   R++H   D++                 K
Sbjct: 880  ---SYTDTEKMKGMVKAETIEKPDRNETL---RMKHGTGDRYA----------------K 917

Query: 827  LGPDGLVYVGAKLNERDPMYSYW----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
            L  DGLV  G  +N  D +        ++SE      +   K ++   +     G  +  
Sbjct: 918  LDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQV 977

Query: 883  SVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             ++ N        I  R  R P +GDKFASR GQKG   + +  ED+PFT  GLVPDI+ 
Sbjct: 978  MLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIII 1037

Query: 938  NPHGFPSRMTIGFL 951
            NPH  PSRMTIG L
Sbjct: 1038 NPHAIPSRMTIGHL 1051



 Score = 49.7 bits (117), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E +Y G  G  +QAQ++FG  +YQRL+HMV DK   +
Sbjct: 1088 GYQSRGFELLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHAR 1131


>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
           [Papio anubis]
          Length = 1083

 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 251 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 310

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 311 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 367

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 368 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 420

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 421 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 476

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 477 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 527

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 528 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 587

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 588 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 647

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 648 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 707

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 708 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 751

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 752 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 793

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 794 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 846

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 847 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 890



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 928 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 971



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 134 ARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPAQLI 188
           AR     YS P  V +  +   +       +     +G++PIML+S  C L  LT   L 
Sbjct: 22  ARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLC 81

Query: 189 ERGEHPDEWGGYFIVGGHEKLV 210
           E  E P + GGYFI+ G EK++
Sbjct: 82  ELNECPLDPGGYFIINGSEKVL 103


>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
          Length = 1167

 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 335 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 394

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 395 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 451

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 452 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 504

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 505 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 560

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 561 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 611

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 612 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 671

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 672 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 732 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 792 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 835

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 836 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 877

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 878 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 930

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 931 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 974



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 162

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 163 DLCELNECPLDPGGYFIINGSEKVL 187



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1012 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1055


>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B
           [Oryctolagus cuniculus]
          Length = 1174

 Score =  215 bits (548), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSR 1062


>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
            reilianum SRZ2]
          Length = 1242

 Score =  215 bits (548), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 247/970 (25%), Positives = 387/970 (39%), Gaps = 202/970 (20%)

Query: 128  KYYPTEARQTRSVYSGPFNVTVAW----------------SWDGKAGGTFTKE----VGR 167
            + +P EAR     YS    V V                  +W  + G T  +E    +G+
Sbjct: 139  QLFPQEARFRNLTYSASLFVDVTQKVLVQSHDEVDLNGDPAWVPEHGKTDVEEQQIFIGK 198

Query: 168  VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNH------- 220
            VPIMLKS  C L+ L         E P + GGYF++ G EK++        NH       
Sbjct: 199  VPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYFVINGSEKVLIAQERMAANHVYVFSKA 258

Query: 221  ---PI---AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV---LHFVTNG-------- 263
               P+   A  R+A +  G   S + V + S  ++++A N +   L ++ N         
Sbjct: 259  PPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNKEKTANNTIRATLPYIRNDIPIVIVFR 318

Query: 264  -----SARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL 311
                   R +  H   +C       +L M++   EE    Q D  V    I +      L
Sbjct: 319  ALGIVPDREVLQH---ICYDFNDTPMLEMLKPCIEEAFVIQ-DRDVALDFIGRRGTTTGL 374

Query: 312  RHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIML 367
                       +L   +LPH+         K     +M  +L        ++D  D    
Sbjct: 375  SRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGK 434

Query: 368  QEIMTGG----SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLAT 416
            + I  GG    +L+  L +K        L       +E  I AA ++S+I + +   LAT
Sbjct: 435  KRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLAT 494

Query: 417  GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPRQLRTD 474
            GN    K +    MQA   V  ++ +NR  + S    + R +    ++ + ++PRQL   
Sbjct: 495  GNWGDQKKA----MQAKAGV--SQVLNRFAFASTLSHLRRTNTPIGRDGKIAKPRQLHNT 548

Query: 475  AWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIP 534
             WG +CP  TP+G  CGL+ +L+    ++   PS   A I   L   G+  L   +Q   
Sbjct: 549  HWGMVCPAETPEGQACGLVKNLSLMATVTVGTPS---APIVEFLEEFGLDSLVD-MQLAH 604

Query: 535  EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGL 594
             +A  + ++G  +G   D     LV  LR L+   + I   + +V   R  +       L
Sbjct: 605  AKATKIFVNGVWMGTHDD--PGQLVDTLRDLR-RKDDISHEVSVVRDIRERE-------L 654

Query: 595  YLFTGPGRMLRPV-------MNL---------------------------AAGNIEWIGT 620
             ++T   R+LRPV       M+L                             G IE++  
Sbjct: 655  RIYTDASRVLRPVFIVNPNDMSLLIKKRHVNMIGQPVPQTGEEFGWTHLVQEGVIEYLDA 714

Query: 621  FEQVFMDIC------------------ITMKEAYPGIT------------THRELSKTDF 650
             E+    IC                  I++  A P               TH E+     
Sbjct: 715  EEEESALICMSPTDLEQSREYQARNGQISLNSADPSARLKSPHYIAPSTWTHCEIHPAMV 774

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            L   A++IP PD NQSPRN+Y   MGKQ +     N+  +     + L  P  P      
Sbjct: 775  LGICASIIPFPDHNQSPRNVYFSAMGKQAVSVNISNFLSRADSMNHVLCYPQKPLGTTRS 834

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
             + L     P GTN IVA++ Y+GY+ ED++I+N+SS +RG     +F+SM+      Y 
Sbjct: 835  MEHLKFRELPAGTNCIVAIMCYSGYNQEDSVIMNQSSIDRG-----LFRSMY------YR 883

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
             Y  E    GV    MQ + F      ++     + + +   Y           DK+  D
Sbjct: 884  GYVAEEKKVGV----MQLEEF------EKPNRDTTIRMKHGTY-----------DKIDAD 922

Query: 831  GLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
            G    G +++  D +         +SE   +  +   K++  + +    +G  +   +T 
Sbjct: 923  GFCAPGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTT 982

Query: 887  NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
            N     ++  R++  R P  GDKFASR GQKG   + +  ED+PF+  G+ PDI+ NPH 
Sbjct: 983  NSHGNKFVKVRVRNTRVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHA 1042

Query: 942  FPSRMTIGFL 951
             PSRMTIG L
Sbjct: 1043 IPSRMTIGHL 1052



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY G  G  +QAQ++ G  +YQRL+HMV DK  ++
Sbjct: 1089 GYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSR 1132


>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
 gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
 gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
           [Pan troglodytes]
 gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
           jacchus]
 gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
           [Pongo abelii]
 gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
           leucogenys]
 gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
           porcellus]
 gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Cricetulus griseus]
 gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
           [Otolemur garnettii]
 gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
           [Papio anubis]
 gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
           Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
           AltName: Full=DNA-directed RNA polymerase II subunit B;
           AltName: Full=RNA polymerase II subunit 2; AltName:
           Full=RNA polymerase II subunit B2
 gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
 gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
           largest subunit [human, HeLa cells, Peptide, 1174 aa]
 gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
           sapiens]
 gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
           sapiens]
 gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted)
           [Rattus norvegicus]
 gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
 gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
 gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
 gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
           troglodytes]
 gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
           troglodytes]
 gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
           troglodytes]
 gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
           troglodytes]
 gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
           troglodytes]
 gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
           troglodytes]
          Length = 1174

 Score =  215 bits (548), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
           subunit RPB2-like [Equus caballus]
          Length = 1174

 Score =  215 bits (548), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLQLAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
           [Pongo abelii]
 gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
           [Otolemur garnettii]
 gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
           troglodytes]
          Length = 1099

 Score =  215 bits (548), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 267 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 326

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 327 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 383

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 384 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 436

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 437 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 492

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 493 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 543

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 544 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 603

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 604 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 663

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 664 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 723

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 724 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 767

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 768 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 809

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 810 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 862

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 863 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 906



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 35  PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 94

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 95  DLCELNECPLDPGGYFIINGSEKVL 119



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 944 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 987


>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
           [Pongo abelii]
 gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
           troglodytes]
          Length = 1167

 Score =  215 bits (548), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 335 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 394

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 395 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 451

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 452 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 504

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 505 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 560

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 561 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 611

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 612 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 671

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 672 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 732 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 792 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 835

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 836 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 877

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 878 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 930

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 931 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 974



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 162

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 163 DLCELNECPLDPGGYFIINGSEKVL 187



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1012 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1055


>gi|429961383|gb|ELA40928.1| hypothetical protein VICG_02017 [Vittaforma corneae ATCC 50505]
          Length = 1108

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 245/984 (24%), Positives = 412/984 (41%), Gaps = 182/984 (18%)

Query: 67  TLGAPHIASFDFMLDEGLD--LAVEDI--APIEFEIYGKTLKLNIVKAAISEPKVPAGPV 122
           TL   H+ SF++ +D  +   +   +I  + I+   Y K L + +   +++E  +     
Sbjct: 19  TLVRQHLESFNYFIDYDIRSIMNANNIVDSDIDHTFYLKYLDIRVGAPSVTENMIET--- 75

Query: 123 GIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR-- 180
                + YP E R     YS    V V +  + +        +G++PIML+S RC L   
Sbjct: 76  -----QIYPLECRNRDLTYSANIYVDVEYVRNKQVVIKRDLCMGKLPIMLRSNRCLLSAK 130

Query: 181 --------NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRL---LINNR-------RNHPI 222
                   +    ++ E  E   + GGYFI+ G E+++ +   L  NR       +    
Sbjct: 131 NNDIIESVSTVNKRIKESQECFLDNGGYFIIQGIERVILIQEQLSKNRIMLEEGTKGVYA 190

Query: 223 AIKRNAWKNRG---LLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLG 279
           ++  ++ +++    L+  D   YI+S   +E     +L       +           LL 
Sbjct: 191 SVTSSSIEHKSKTSLIVKDDCFYIQSTSFNEDVPAVILIKALGIISDAEICEIVGKELLD 250

Query: 280 MMQSLHEEGIHTQ---HDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD-DY 335
           ++    EE I  +    +  + +   F  K+  +   ++EV     +L+  ILP+++ DY
Sbjct: 251 ILLPSFEEAISKKIFREEQAILYLSKFA-KINPENDKIDEVRT---VLSERILPNIEFDY 306

Query: 336 WDK----FLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------- 384
             +    ++CL  M  KL     G++  D +D +  +     G L   L +         
Sbjct: 307 TLRKKGVYVCL--MIRKLAMNKAGIIGPDDKDYMGNKRFELAGQLLGILFEDSFKKFNYE 364

Query: 385 -KSGTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGF 435
            K     +L +    + F A        SSI S++T  ++TGN +  +      M+ SG 
Sbjct: 365 LKKSIDKILSKRTRTSEFDALTFFNLQTSSITSSLTRAISTGNWNLKRFR----MERSG- 419

Query: 436 VIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLL 493
             ++  I R  Y+     + +  S+F++ R  S PR L T +WG +CPV TP+G  CGL+
Sbjct: 420 --VSSIITRYSYVCALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLV 477

Query: 494 NHLTTNCQISEYIPSKVLAQI-------------------------------------PS 516
            +L    +I+     K++ ++                                     P 
Sbjct: 478 KNLALLAEITTDSDPKIIEKVLMEYGVRKIEICYGKEFYQKNNHLVFINGGIFGIVSQPG 537

Query: 517 VLVSL--------GMLPLTPVIQSIPEQALMVMLD-GRIVG--YILDQIATSLVPKLRML 565
           +LV+L         +     +  +  E+++ V  D GRI     ILDQ + +L  K  + 
Sbjct: 538 ILVNLFRKRRRCGKIDKFVSIYTNSDEKSVYVSTDNGRISRPVIILDQ-SKALTAKSLIE 596

Query: 566 KIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
           ++   +   +   V+    E  + ++ G+Y      R       +  G IE++   E+  
Sbjct: 597 RLKKHRARDNYTEVHDHDAESQLLIHLGIYFDKESLRYKSFSDLINEGKIEYLDINEENN 656

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             I  T  E     TTH E+S+   L  +A L+P P  NQSPRN YQC MGKQ +G    
Sbjct: 657 CMIAFTASEINEN-TTHLEISEFAILGYIAGLVPFPHHNQSPRNTYQCAMGKQAIGHIAA 715

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N + +    + +L     P       D +  +  P G NA+VAV+SY+GYD+EDA+ILN+
Sbjct: 716 NVKRRFDSAILQLNYTQRPIASSKTLDIIKYNQIPSGFNAMVAVMSYSGYDIEDAVILNQ 775

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            S +RG A         +E+      Y T T+                          V 
Sbjct: 776 GSVDRGMAR--------VEV------YKTNTI--------------------------VL 795

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
            K+ +              DKL  DG++  G  + +   + +      N   + ++ G  
Sbjct: 796 KKYSS-----------GQSDKLVGDGVISPGKYVVDGTVLVNKISPITNTLTSSKHKGHP 844

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
              +E V +S   +E  S+      +  R  R+P VGDKF+SR GQKG+  +  P  D+P
Sbjct: 845 AH-IEKVMISK--SEDESIIK----VVTRETRSPEVGDKFSSRHGQKGVVGLIVPQVDMP 897

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIG 949
           F + GL PDI+ NPHGFPSRMT+G
Sbjct: 898 FNEQGLAPDIIMNPHGFPSRMTVG 921



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
            AMI  K +    F    I     +  +SGY+Y G +   SG  G  ++A IF+G + YQR
Sbjct: 932  AMIEGKYADATAFKKNQIRDFCDVLAKSGYSYSGKDIFTSGTTGEQLEAYIFYGPIFYQR 991

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            L+HMV+DK   +    R    +   +    DG + +G    ERD +  Y           
Sbjct: 992  LKHMVADKMHCRARGPRAILTRQPTEGRSNDGGLRLGEM--ERDCLIGY----------- 1038

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYR 894
               G   +  E + +SS   E   +  +C  +GY+
Sbjct: 1039 ---GTSALLNERLMVSSDIFE-AFICKDCGVVGYK 1069


>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
           niloticus]
          Length = 1174

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q +IF        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEIFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      +S N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMT+G L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHL 981



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1017 EYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
           [Schizosaccharomyces pombe 972h-]
 gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
           Short=RNA polymerase III subunit 2; Short=RNA polymerase
           III subunit C2; AltName: Full=C128; AltName:
           Full=DNA-directed RNA polymerase III 130 kDa
           polypeptide; AltName: Full=RPC130
 gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
           [Schizosaccharomyces pombe]
 gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
          Length = 1165

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 221/905 (24%), Positives = 367/905 (40%), Gaps = 141/905 (15%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y     V + ++   +        +GR+P+ML+S +C L      ++   
Sbjct: 123 PHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAAL 182

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLI-----------------NNRRNHPIAI 224
            E P + GGYFIV G EK++         R+++                 + R++    I
Sbjct: 183 NECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSKTYVI 242

Query: 225 KRNA--WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF--MFSHRKSMCLLGM 280
            +N   +     +  D+ + +        +   +   V    A +  +F+     C    
Sbjct: 243 TKNGKLYLKHNSVADDIPIVVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECA--- 299

Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
                +  I+T   +  + G   K   +     L   E    +L   +L H++    ++ 
Sbjct: 300 -----KLNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFR 354

Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS----GT 388
            K + +  M  ++   +   +Q+D  D +  + +   G L    +  L KK  S      
Sbjct: 355 PKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNI 414

Query: 389 SAVLK------ESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
             VLK      E D Y      S  I   M   L+TGN S  +      M+ +G   +  
Sbjct: 415 DKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFK----MERAG---VTH 467

Query: 441 NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------ 492
            ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  CGL      
Sbjct: 468 VLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLAL 527

Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD 552
           + H+TT+ +    I       I  + V  G        +       +V L+G I+G  + 
Sbjct: 528 MTHITTDEEEEPIIKLAYAFGIEDIHVISGR-------ELHSHGTYLVYLNGAILG--IS 578

Query: 553 QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN--- 609
           +  +  V   R L+  G+  P     +++   ++       +++ T  GR+ RP++    
Sbjct: 579 RYPSLFVASFRKLRRSGKISP--FIGIFINTHQRA------VFISTDGGRICRPLIIVQN 630

Query: 610 -----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
                                  L  G +E++   E+    I +  ++  P  TTH E+ 
Sbjct: 631 GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPD-TTHLEIE 689

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
               L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  
Sbjct: 690 PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMV 749

Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
           +    + +  D  P G NA VA++SY+GYD+EDA++LNKSS +RGF    +F    + + 
Sbjct: 750 KTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVR 809

Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFF--GVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
              N  GT              ++ +  GVV    L  +       + Y  +     AL 
Sbjct: 810 KYPN--GTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNAL- 866

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
                D  + +G         ++   ES  +     Y   E   ++ V +++  ++   +
Sbjct: 867 -----DNSITLG---------HTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLI 912

Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
                 +  R  R P +GDKF+SR GQKG+C V    ED+PF D G+ PDI+ NPHGFPS
Sbjct: 913 K-----VLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPS 967

Query: 945 RMTIG 949
           RMT+G
Sbjct: 968 RMTVG 972



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E GYNY G + + SG+ G  ++A IF G ++YQ+L+HMV DK   +    R    + 
Sbjct: 1006 ILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQ 1065

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   +  
Sbjct: 1066 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMISSDACD-V 1108

Query: 883  SVTPNCAYIGYR 894
             V   C  +GY+
Sbjct: 1109 DVCGQCGLLGYK 1120


>gi|294953589|ref|XP_002787839.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Perkinsus marinus ATCC 50983]
 gi|239902863|gb|EER19635.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Perkinsus marinus ATCC 50983]
          Length = 1159

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 234/890 (26%), Positives = 378/890 (42%), Gaps = 162/890 (18%)

Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRL---LINNRRNHP 221
           VGR+PIML+SK C L + T  Q+    E P + GGYFI+ G EK++ +   L NNR    
Sbjct: 140 VGRLPIMLRSKLCRLHDATTEQMERMQECPHDPGGYFIIKGTEKVLLMQEQLSNNRIIVE 199

Query: 222 IAIKR------------NAWKNRGLLFSDL-GVYIRSVKRDESATNNVLHFVTNGSARFM 268
           +  K+            N  +      S+L G++++      SA   ++  V    A  M
Sbjct: 200 MDPKKLVQAVVTSSTADNKSRTVVCFKSELSGLFVK-----HSAFTELIPAVIMLRAMGM 254

Query: 269 FSHRKSMCLLGM-----------MQSLHEEGIHTQHDSKVFFGQIFKEKLQYD------- 310
            S ++ + ++G            +Q  H  G+ +Q  +  + G   K ++  D       
Sbjct: 255 ESDQEIVQMVGTEKCHVDGMILSLQDAHATGVFSQQQALEYLGNKLKIRMYADGSFSSAF 314

Query: 311 -------LRHLNEVEICDYML-----------TNCILPHLDDYWDKFLCLS-HMTCKLFH 351
                   + L+    C ++             + +L   D Y +K L L+  +   LF 
Sbjct: 315 DQDKGGATKPLDFSGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELAGQLIALLFE 374

Query: 352 VVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKES---DIYAAFRASSIES 408
            +   +  + + S+ ++      + + Q     ++G S V  +S   D+     +  I  
Sbjct: 375 DLFKSMNTEIKKSVDMRL-----TKFFQQTSSARAGRSTVGLDSGYPDVLRDIDSERITR 429

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-S 466
            M   +++GN +  +      +  SG   +++ ++R  +++   A+ R  S F++ R  +
Sbjct: 430 GMNRAISSGNWNIKRFR----IDRSG---VSQVLSRFSFIAALGAMTRVKSQFEKSRKLA 482

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
            PR L+   WG +CP  TP+G  CGL+  L+    ++   P +    I  +  SLG+   
Sbjct: 483 GPRALQPSQWGMLCPSDTPEGEQCGLIKALSLLAHVT--TPDEE-GPIRRLCYSLGVEDA 539

Query: 527 TPVIQSIPEQA--LMVMLDGRIVG-YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKR 583
             +       A  + V L+G ++G +   Q   S +  LR    +GE +      +Y   
Sbjct: 540 AGLTGEELHSAGTITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIGEFVS-----IYEHE 594

Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN---------------------------IE 616
            ++       + + T  GR+ RP++ +  G                            IE
Sbjct: 595 AQRA------IIIATDGGRLCRPLIVVKKGKPMLKPEVHLRKLRSGELRFTDFLRLGIIE 648

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           W+   E+    I I   E     +TH E+     L  +A L+P P  NQSPRN YQC MG
Sbjct: 649 WVDVNEENNSYIAIN-PEDVTMESTHLEIEPLTLLGAVAGLVPYPHHNQSPRNTYQCAMG 707

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ MG    N   +   +L  L  P  P  +    D +  DN P G NA VAV+SY+GYD
Sbjct: 708 KQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIGYDNLPAGHNASVAVMSYSGYD 767

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSM------MQAQI 790
           +EDA+I+NK+S +RGF   C+ +            Y T    S +  S       +    
Sbjct: 768 IEDALIMNKASIDRGFGRCCVTRK-----------YATPLARSAIGSSEELRAPPVVGGG 816

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG--LVYVGAKLNERDPM--- 845
             G   +QR    V+DK  +  Y   D      ED L   G  +V  G  +N+  PM   
Sbjct: 817 GKGGGRHQRQGGSVADKHCSCRYAIID------EDGLPFSGEQVVDGGILINKVSPMSDA 870

Query: 846 ----YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
                S+W+++   Y       K  +   V R+ +   E  +    C     R  R P +
Sbjct: 871 ATGQVSHWRDTPISY-------KNPVPSYVDRVIATENEDQAKIFKCI---TRQTRRPEL 920

Query: 902 GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GDKF+SR GQKG+  +    ED+PF + G  PD++ NPHGFPSRMT+G L
Sbjct: 921 GDKFSSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGFPSRMTVGKL 970



 Score = 43.5 bits (101), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 19/131 (14%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  G++    E + SGV G  ++  IF G ++YQ+L+HMV DK   +     +   +   
Sbjct: 1004 IRHGFHPSAKEYITSGVTGEALECYIFVGPIYYQKLKHMVMDKIHARSTGPVNQLTRQPT 1063

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG-FTEGGS 883
            +    DG + +G    ERD + +Y              G   + +E + +SS  FT   S
Sbjct: 1064 EGRAKDGGLRLGEM--ERDCLVAY--------------GASNLLLERLMLSSDVFT--AS 1105

Query: 884  VTPNCAYIGYR 894
            V   C  + Y+
Sbjct: 1106 VCRRCGLLSYQ 1116


>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
          Length = 1167

 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 304/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 335 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 394

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A     I   +   LATGN    K 
Sbjct: 395 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAINTKIISDGLKYSLATGNWGDQKK 451

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 452 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 504

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 505 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 560

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 561 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 611

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 612 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 671

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 672 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 732 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 792 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 835

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 836 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 877

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 878 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 930

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 931 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 974



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 162

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 163 DLCELNECPLDPGGYFIINGSEKVL 187



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1012 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1055


>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1245

 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 251/974 (25%), Positives = 381/974 (39%), Gaps = 204/974 (20%)

Query: 127  NKYYPTEARQTRSVYSGPFNVT--------------VAWSW------DGKAGGTFTKE-- 164
            N  +P EAR     YS P  V               V   W      DG+  G   ++  
Sbjct: 133  NMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGEVEGAEEEKTS 192

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            +G+VP+M++S  C L  L   Q  E GE P + GGYFI+ G EK++        NH    
Sbjct: 193  IGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVF 252

Query: 225  KR------------NAWKNRGLLFSDLGVYIRSVKRDESATNNVLH-------------- 258
             +            N+ K +G   ++    +R   R    T  V+               
Sbjct: 253  LKAAPARFTYFAEINSQKEKGGRVAN-HTEVRMYARASGTTGGVIRVSLPYTKVDIPLVV 311

Query: 259  -FVTNG--SARFMFSH----RKSMCLLGMMQSLHEEGIHTQ-HDSKVFF----GQIFKEK 306
             F   G    R + SH     +   LL M+Q   EE    Q  D+ + F    GQ   EK
Sbjct: 312  VFRALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQ--HEK 369

Query: 307  LQYDLRHLNEVEICDYMLTNCILPHLDDYW----DKFLCLSHMTCKLFHVVQGMVQLDSE 362
                 R     +I    L    LPH+         K   L +M  +L     G  +LD  
Sbjct: 370  APRAQRQRAAFDI----LHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRKELDDR 425

Query: 363  DSIMLQEIMTGGSLYLQLLK----KEKSGTSAVLK-------ESDIYAAFRASSIESAMT 411
            D    + +   G L  ++      K +      LK       E  +  A R ++I   + 
Sbjct: 426  DHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNKEFALNMAIRPNTITDGLK 485

Query: 412  NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPR 469
              LATGN     N+   + Q          +NR  + S    + R +    ++ ++++PR
Sbjct: 486  YALATGNWGKRDNTRAGVSQV---------LNRYTFASTLSHLRRTNTPIGRDSKAAKPR 536

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP-SKVLAQIPSVLVSLGMLPLTP 528
            QL    WG +CP  TP+G+ CGL+     N  +  YI      A +   L   G+  L+ 
Sbjct: 537  QLHNTHWGMVCPAETPEGSACGLVK----NLALMSYISVGSYSAPVMEFLEEWGLEDLSE 592

Query: 529  VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGM 588
              Q  P  A  V ++G  +G   D  A +L   L  ++  G ++   + IV   R E+ +
Sbjct: 593  Y-QDAP-TATKVFVNGVWMGIHRD--APTLHNNLLQMR-RGGQLKYEVSIVRDIR-EREL 646

Query: 589  GLYPG-------LYLFTGPGRMLRPVMN---------------------LAAGNIEWIGT 620
             LY         L++   P + LR   +                     L+ G +E++  
Sbjct: 647  RLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLLSEGIVEYVDA 706

Query: 621  FEQVFMDICITMKEAYPGIT----------------------------------THRELS 646
             E+  + I +T ++     T                                  TH E+ 
Sbjct: 707  AEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIH 766

Query: 647  KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
             +  L   A+++P PD NQSPRN YQ  MGKQ MG    N++ +    +  L  P  P  
Sbjct: 767  PSMILGVCASIVPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLA 826

Query: 707  RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
                 + L     P G NAIVA++ Y+GY+ ED++I+N+SS +RG     +F+S++    
Sbjct: 827  TTRSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRG-----LFRSLYFR-- 879

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
               +Y  TE M   V    ++       +   R++H   D++                 K
Sbjct: 880  ---SYTDTEKMKGMVKAETIEKPDRNETL---RMKHGTGDRYA----------------K 917

Query: 827  LGPDGLVYVGAKLNERDPMYSYW----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
            L  DGLV  G  +N  D +        ++SE      +   K ++   +     G  +  
Sbjct: 918  LDVDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQV 977

Query: 883  SVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
             ++ N        I  R  R P +GDKFASR GQKG   + +  ED+PFT  GLVPDI+ 
Sbjct: 978  MLSTNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIII 1037

Query: 938  NPHGFPSRMTIGFL 951
            NPH  PSRMTIG L
Sbjct: 1038 NPHAIPSRMTIGHL 1051



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E +Y G  G  +QAQ++FG  +YQRL+HMV DK   +
Sbjct: 1088 GYQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHAR 1131


>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
          Length = 1226

 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323  MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
            +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 394  VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 453

Query: 379  QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
             L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 454  FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 510

Query: 425  STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
            +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 511  A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 563

Query: 482  VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
              TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 564  AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 619

Query: 541  MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
             ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 620  FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 670

Query: 601  GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
            GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 671  GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 730

Query: 632  MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
              +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 731  PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 790

Query: 686  NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
            N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 791  NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 850

Query: 746  SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
            S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 851  SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 894

Query: 804  VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                              A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 895  ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 936

Query: 855  RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
            R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 937  R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 989

Query: 908  RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 990  RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 1033



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 162 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 221

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 222 DLCELNECPLDPGGYFIINGSEKVL 246



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1071 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1114


>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
           partial [Takifugu rubripes]
          Length = 982

 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 150 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 209

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 210 FLFR---GMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKK 266

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG +CP
Sbjct: 267 A----HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCP 319

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 320 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 375

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 376 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 426

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 427 GRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 486

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 487 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 546

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 547 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 606

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q +IF        Q +RH 
Sbjct: 607 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEIFEKPTRETCQGMRH- 650

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ +KL  DGL+  G +++  D         P      ES N
Sbjct: 651 ------------------AIYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPDNEDELESTN 692

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 693 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 745

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMT+G L
Sbjct: 746 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHL 789



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           E GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 825 EYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSR 870


>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 1140

 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 244/924 (26%), Positives = 370/924 (40%), Gaps = 167/924 (18%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVP-----IMLKSKRCHLRNLTP 184
           +P EAR     Y+ P  + V      + G     +  RVP     +ML+S  C L  L+ 
Sbjct: 91  FPNEARIRDLTYASPLFIDVTKETISELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLSD 150

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN----RRNHPI---------AIKRN 227
             LI+ GE P + GGYFIV G EK++    R+  N     ++  P          ++   
Sbjct: 151 KDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEK 210

Query: 228 AWKNRGLLFSDL-------GVYIRSVKRDES--ATNNVLHFVTNGSARFMFSHRKSMCLL 278
           + +N   L   L        V +  VK+D         L F+++        +     + 
Sbjct: 211 SSRNPSTLSMKLCRSPGVIRVSLPLVKQDIPLFVLYRALGFLSDKEIIDHILYEDDDEMF 270

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY--- 335
            +++   EEG+  Q D  V    I K            + I   +L   +LPH+      
Sbjct: 271 ELLKESIEEGMVVQ-DQNVALDYIGKRSAPVGTPQEKRIIIAKDLLAKEVLPHIGTQEFC 329

Query: 336 -WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGTSA 390
              K   + ++  +L  V  G    D  D    + +   G    SL+  L KK  + T+ 
Sbjct: 330 ETKKAYFIGYIVQRLLLVALGRKNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTR 389

Query: 391 VL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
            +       +E +I    +AS I       LATGN         + MQ    V  A+ +N
Sbjct: 390 HMQKCIENGREFNIALGLKASIITQGFRYALATGNW----GDQAKAMQTRAGV--AQVLN 443

Query: 444 RMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           R  +   +SH R V+     +E + + PRQL    WG +CP  TP+G  CGL+ +L+   
Sbjct: 444 RYNFVSTLSHLRRVNT-PIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMA 502

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
            IS    S  L +    L   G+  L  +       A  + ++G  VG   D +   L+ 
Sbjct: 503 YISVGSSSGPLVEF---LEECGVESLEEISTPQLNAATKIFVNGIWVGIHSDPVY--LIK 557

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM------------ 608
            L++L+   E + K + IV   R ++       + + +  GR  RP++            
Sbjct: 558 SLKLLRRSLE-MDKEVSIVRDIREKE-------IRIQSDAGRPCRPLLVVKNNELVITPE 609

Query: 609 ---NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT-------------------THRELS 646
               L  G I+W     + F++     +E    I                    TH E+ 
Sbjct: 610 DIKRLKRGEIKWDNLISEGFIEFLDVEEEEMSMIAMNTKALEESKKASDVKISYTHCEIH 669

Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT------ 700
               L   A+ IP PD NQSPRN YQ  MGKQ MG    N+       L R+ T      
Sbjct: 670 PALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNF-------LLRMDTLSNILF 722

Query: 701 -PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
            P  P       + L     P G NA+VA+  Y+GY+ ED++I+N+S+ +RG     +F+
Sbjct: 723 YPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRG-----LFR 777

Query: 760 SMFIELESGYNYYGTETMYS-GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
           S F        Y   E+M   GV+    +     G V   R++++        +Y     
Sbjct: 778 SFFYR-----TYTDQESMSRPGVNEEFCKPS--RGTV--LRMKNL--------NY----- 815

Query: 819 ANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCVEV 871
                 +KL  DGL+  G ++   D       P+    + ++   V         M    
Sbjct: 816 ------NKLDEDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAM---- 865

Query: 872 VRMSSGFTEGGSVTPNCAY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
            R  +G  +   VT    Y    I  R  R P +GDKFASR  QKG   +    ED+PFT
Sbjct: 866 RRTETGIVDTVIVTNKDGYKFSKIKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFT 925

Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
             G+VPDI+ NPH  PSRMTIG L
Sbjct: 926 SDGIVPDIIINPHAIPSRMTIGHL 949



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+   G E MY+G+ G  ++AQ+FFG  +YQRL+HMV DK   +
Sbjct: 986  GFQQRGLEVMYNGMTGRKLRAQVFFGPTYYQRLKHMVDDKIHAR 1029


>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
 gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
           [Canis lupus familiaris]
 gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Ailuropoda melanoleuca]
 gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
           [Felis catus]
 gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
 gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
 gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
          Length = 1174

 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 201/700 (28%), Positives = 303/700 (43%), Gaps = 131/700 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVT 858
                             A+ DKL  DGL+  G +++  D +          E E     
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN 884

Query: 859 CRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQ 911
            RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFASR GQ
Sbjct: 885 RRYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRHGQ 941

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 942 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|149067363|gb|EDM17096.1| similar to RNA polymerase III subunit RPC2 (predicted) [Rattus
           norvegicus]
          Length = 826

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 224/859 (26%), Positives = 355/859 (41%), Gaps = 161/859 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S  C L   TPA+  + 
Sbjct: 88  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 147

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 148 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 195

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG--QIFK 304
             ++ +  N+   V  G  RF   H      + ++      G+ +  +     G  +   
Sbjct: 196 THEKKSRTNMA--VKQG--RFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVM 251

Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
                 L    + +I   M    +L   +D + KF                    +SE  
Sbjct: 252 AAFGPSLEECQKAQIFTQMQLLSLL--FEDLFKKF--------------------NSE-- 287

Query: 365 IMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKN 424
             +++I        Q++ K+++       + D+    R   I + M N ++TGN S  + 
Sbjct: 288 --MKKIAD------QVIPKQRAA------QFDVVKHMRQDQITNGMVNAISTGNWSLKRF 333

Query: 425 STLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRSSEPRQLRTDAWGFICPVH 483
                M   G   + + ++R+ Y+S    + R  S F++ R +                 
Sbjct: 334 K----MDRQG---VTQVLSRLSYISALGMMTRISSQFEKTRKA----------------- 369

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
                 CGL+ +L     I+  +    + ++   L    +  L     S P    +V L+
Sbjct: 370 ------CGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYP-NVFLVFLN 422

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           G I+G I D     LV   R+++  G   E +  S  +               +Y+ +  
Sbjct: 423 GNILGVIRDH--KKLVSTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDG 469

Query: 601 GRMLRPVM---------------NLAAGN-----------IEWIGTFEQVFMDICITMKE 634
           GR+ RP +                LA G            +E++   E+   +I +  + 
Sbjct: 470 GRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEH 528

Query: 635 AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGK 694
                TTH E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    
Sbjct: 529 TINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTL 588

Query: 695 LYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAH 754
           +Y L  P  P  +    + +D +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF  
Sbjct: 589 MYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGR 648

Query: 755 GCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF 814
             ++K+    L+     Y  +T +  V G M+ A     +  ++ L           D  
Sbjct: 649 CLVYKNAKCTLKR----YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DAD 692

Query: 815 GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVV 872
           G     + +E+K     LV        + P+       + +Y  V   Y G  +  +E V
Sbjct: 693 GICSPGEKVENK---QVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKV 749

Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
            +SS   +   +      +  R  R P +GDKF+SR GQKG+C +  P ED+PF DSG+ 
Sbjct: 750 MISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGIC 804

Query: 933 PDIVFNPHGFPSRMTIGFL 951
           PDI+ NPHGFPSRMT+  L
Sbjct: 805 PDIIMNPHGFPSRMTVSHL 823


>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
          Length = 1104

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 201/700 (28%), Positives = 303/700 (43%), Gaps = 131/700 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 294 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 353

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 354 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 410

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 411 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 463

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 464 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 519

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 520 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 570

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 571 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 630

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 631 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 690

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 691 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 750

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 751 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 794

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVT 858
                             A+ DKL  DGL+  G +++  D +          E E     
Sbjct: 795 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN 836

Query: 859 CRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQ 911
            RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFASR GQ
Sbjct: 837 RRYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRHGQ 893

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 894 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 933



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 62  PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 121

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 122 DLCELNECPLDPGGYFIINGSEKVL 146



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 971  GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1014


>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 238/943 (25%), Positives = 391/943 (41%), Gaps = 183/943 (19%)

Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRC 177
           N  +P  AR     YS P  V V      K       T T+E     +G+VPIML+S  C
Sbjct: 116 NTLFPKAARLRNLTYSSPLYVDVTKRVVKKGFDCEEVTETQEFAKVFIGKVPIMLRSSYC 175

Query: 178 HLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN-------AWK 230
            L +L    L++ GE P + GGYFIV G EK++        NH    K+          +
Sbjct: 176 SLYHLPEKDLMDLGECPYDQGGYFIVNGSEKVLIAQEKMSTNHVYVFKKRQPNKYSYVAE 235

Query: 231 NRGLLFSD----LGVYIRSVKRDESATNN-----------------------VLHFVTNG 263
            R +  S      G+++R + R  +                            L FV + 
Sbjct: 236 VRSIAESQNKAPSGMFVRMLSRSGAKRGTSGQYIYATLPYIRTEVPIIIIFRALGFVADK 295

Query: 264 SAR----FMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEI 319
                  + F+  K M LL   +   EE    Q + +V    I K      +     ++ 
Sbjct: 296 DILEHICYDFNDSKMMELL---RPFLEEAFVIQ-NQQVALDYIGKRGSTIGVTRDKRIKY 351

Query: 320 CDYMLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGS 375
              +L   +LPH+  ++Y +  K     ++  +L     G    D  D    + +   G 
Sbjct: 352 AREILQREMLPHVGTEEYCETKKAYYFGYIINRLLLCALGRRPEDDRDHYANKRLDLAGP 411

Query: 376 L--------YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKN 424
           L        + +L +  +S     +   K+ ++  A +A +I S +   +ATGN      
Sbjct: 412 LLAGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSIATGNWG---- 467

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
              Q   A     +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG +CP
Sbjct: 468 ---QANAAGTRAGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSHWGMMCP 523

Query: 482 VHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVM 541
             TP+G  CGL+ +L     I+    +  + +      +     ++P +  IP QA  + 
Sbjct: 524 AETPEGQACGLVKNLALMVYITVGSAANPILEFLDEWSTENFEEISPAV--IP-QATKIF 580

Query: 542 LDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEI-----VYLKRPEKGMGLYPGLYL 596
           ++G  +G  + +    LV  LR L+    ++  + E+     ++LK           L L
Sbjct: 581 VNGNWIG--IHRNPELLVRTLRQLR---RQVDVNTEVGIIRDIHLKE----------LRL 625

Query: 597 FTGPGRMLRPVMNLAA------------------------------GNIEWIGTFEQVFM 626
           +T  GR  RP+  +                                G++E++ T E+   
Sbjct: 626 YTDYGRCSRPLFIVDKQRLVIKKKDILALQQRESADEYGWHDLVRNGSVEYVDTEEEETT 685

Query: 627 DICITMKE----------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
            I +T+ +          AY    TH E+  +  L   A++IP PD NQSPRN YQ  MG
Sbjct: 686 MISMTINDLINSRHNPDAAYSETYTHCEIHPSLVLGVCASIIPFPDHNQSPRNTYQSAMG 745

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ MG    N++ +     Y L  P  P       + L     P G NAIVA+  Y+GY+
Sbjct: 746 KQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 805

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
            ED++I+N+SS +RGF     F+S+F       +Y   E       G++++    FG  +
Sbjct: 806 QEDSVIMNQSSIDRGF-----FRSLFFR-----SYRDEEKKM----GTLVKED--FGCPN 849

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY---SYWKESE 853
                 M    +                DKL  DG    G +++  D +    + +   E
Sbjct: 850 RDNTMGMRHGSY----------------DKLEDDGFAPPGTRVSGDDVIIGKTTPFTPDE 893

Query: 854 NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASR 908
           N+ +  R++ +++    +    SG  +   +T N     ++  RI+  R P +GDKF+SR
Sbjct: 894 NQNI--RFT-RQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVRIPQIGDKFSSR 950

Query: 909 AGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            GQKG   + +  +D+P++  G+ PDI+ NPH  PSRMTIG L
Sbjct: 951 HGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQL 993



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
            GY   G ETMY+G  G  + + IF G  +YQRL+HMV DK  ++   GR P
Sbjct: 1030 GYQMRGFETMYNGHTGRPLTSMIFLGPTYYQRLKHMVDDKIHSR---GRGP 1077


>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
          Length = 1175

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 201/700 (28%), Positives = 303/700 (43%), Gaps = 131/700 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 343 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 402

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 403 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 459

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 460 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 512

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 513 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 568

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 569 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 619

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 620 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 679

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 680 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 739

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 740 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 799

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 800 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 843

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVT 858
                             A+ DKL  DGL+  G +++  D +          E E     
Sbjct: 844 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN 885

Query: 859 CRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQ 911
            RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFASR GQ
Sbjct: 886 RRYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRHGQ 942

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 943 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 982



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 170

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 171 DLCELNECPLDPGGYFIINGSEKVL 195



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1020 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1063


>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
           [Canis lupus familiaris]
 gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
           [Felis catus]
          Length = 1099

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 201/700 (28%), Positives = 303/700 (43%), Gaps = 131/700 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 267 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 326

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 327 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 383

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 384 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 436

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 437 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 492

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 493 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 543

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 544 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 603

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 604 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 663

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 664 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 723

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 724 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 767

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVT 858
                             A+ DKL  DGL+  G +++  D +          E E     
Sbjct: 768 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN 809

Query: 859 CRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQ 911
            RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFASR GQ
Sbjct: 810 RRYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRHGQ 866

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 867 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 906



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 35  PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 94

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 95  DLCELNECPLDPGGYFIINGSEKVL 119



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 944 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 987


>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
 gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
          Length = 1174

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 302/704 (42%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGYD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R  T R       C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 RRFTKRD------CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
          Length = 1168

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 201/700 (28%), Positives = 303/700 (43%), Gaps = 131/700 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 336 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 395

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 396 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 452

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 453 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 505

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 506 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 561

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 562 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 612

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 613 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 672

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 673 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 732

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 733 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 792

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 793 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 836

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVT 858
                             A+ DKL  DGL+  G +++  D +          E E     
Sbjct: 837 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN 878

Query: 859 CRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQ 911
            RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFASR GQ
Sbjct: 879 RRYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRHGQ 935

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 936 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 975



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 104 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 163

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 164 DLCELNECPLDPGGYFIINGSEKVL 188



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1013 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1056


>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
           adamanteus]
          Length = 1167

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 203/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 335 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 394

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 395 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 451

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 452 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 504

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 505 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 560

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 561 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 611

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 612 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 671

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 672 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 732 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 792 SAVDRGF-----FRSVF------YRSYKEQESKKGYD----QEEVFEKPSRETCQGMRH- 835

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 836 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 877

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   +T N      C  I  R  R P +GDKFAS
Sbjct: 878 R----RYTKRD--CSTFLRTSETGIVDQVMITLNQEGYKFCK-IRVRSVRIPQIGDKFAS 930

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 931 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 974



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 162

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 163 DLCELNECPLDPGGYFIINGSEKVL 187



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1012 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1055


>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
          Length = 1167

 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 201/700 (28%), Positives = 303/700 (43%), Gaps = 131/700 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 335 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 394

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 395 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 451

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 452 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 504

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 505 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 560

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 561 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 611

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 612 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 671

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 672 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 732 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 792 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 835

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVT 858
                             A+ DKL  DGL+  G +++  D +          E E     
Sbjct: 836 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTN 877

Query: 859 CRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQ 911
            RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFASR GQ
Sbjct: 878 RRYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRHGQ 934

Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 935 KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 974



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 162

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 163 DLCELNECPLDPGGYFIINGSEKVL 187



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1012 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1055


>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
           guttata]
          Length = 1174

 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 302/704 (42%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGYD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R  T R       C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 RRFTKRD------CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba
           livia]
          Length = 1168

 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 204/704 (28%), Positives = 302/704 (42%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 336 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 395

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 396 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 452

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 453 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 505

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 506 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 561

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 562 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 612

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 613 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 672

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 673 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 732

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 733 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 792

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 793 SAVDRGF-----FRSVF------YRSYKEQESKKGYD----QEEVFEKPTRETCQGMRH- 836

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 837 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 878

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R  T R       C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 879 RRFTKRD------CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 931

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 932 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 975



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 104 PNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 163

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 164 DLCELNECPLDPGGYFIINGSEKVL 188



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1013 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1056


>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1167

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 203/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 335 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 394

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 395 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 451

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 452 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 504

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 505 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 560

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 561 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 611

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 612 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 671

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 672 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 731

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 732 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 791

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 792 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 835

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ +KL  DGL+  G +++  D         P      ES N
Sbjct: 836 ------------------AIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 877

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 878 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 930

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 931 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 974



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 162

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 163 DLCELNECPLDPGGYFIINGSEKVL 187



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1012 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1055


>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
 gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
           Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
           AltName: Full=DNA-directed RNA polymerase II subunit B;
           AltName: Full=RNA polymerase II subunit 2; AltName:
           Full=RNA polymerase II subunit B2
 gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1174

 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 203/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ +KL  DGL+  G +++  D         P      ES N
Sbjct: 843 ------------------AIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|313221111|emb|CBY31939.1| unnamed protein product [Oikopleura dioica]
          Length = 1110

 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 176/649 (27%), Positives = 294/649 (45%), Gaps = 125/649 (19%)

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLL----------------KKEKSGTSAVLKESDI 397
           +GM++ D  D    + I   G L   L                 KK +  T+ V+   D+
Sbjct: 347 RGMIKADDRDYYGNKRIQLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTAQVV---DV 403

Query: 398 YAAFRA--SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
            ++ ++  + I  AM   + TGN +  +      M   G   + E +NRM ++S      
Sbjct: 404 ISSMKSLQNKITLAMEAAIQTGNWNLKRFK----MDRKG---ITEILNRMSFISIILVGT 456

Query: 456 ----RGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVL 511
               +G + + M+ + PR L+   WG +CP  TP+G  CGL+ ++     ++ +   K  
Sbjct: 457 MTRIKGHFEKTMKVTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDK-- 514

Query: 512 AQIPSVLVSLGMLPLTPVI-QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
             I  +L++LG+   + +    +     +V L+G +VG   +    SL   +++++  G 
Sbjct: 515 -PIHRLLINLGVEETSTLSGYDLHGANYLVFLNGALVGATRN--PKSLTRTVQLIRRAG- 570

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN---------------- 614
           ++P+ +  VY+    +       +YL +  GR+ RP + +  G                 
Sbjct: 571 RLPEFVS-VYVSEEHRA------VYLASDGGRLTRPCIIVENGRPKVTQKHINALLEGRV 623

Query: 615 ----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
                     IE++   E+    I +  ++      TH E+     L   A LIP PD N
Sbjct: 624 KFPDFVKNGLIEYLDVNEENSALIAVYERDITKK-HTHLEIEPFALLGVCAGLIPYPDHN 682

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRN YQC MGKQ MGT  +N R +    LY L  P  P  +    + +  +  P G N
Sbjct: 683 QSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIELIGFEQLPAGQN 742

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT--ETMYSGVD 782
           A VAV+SY+GYD+EDA++LNK+S +RG+    ++++   +L+      GT  ET+   +D
Sbjct: 743 ATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNEKTQLQR----RGTLVETIEERID 798

Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER 842
           G  + A+        +++R                      ++ L  DG+V  G ++ +R
Sbjct: 799 GPALDAK------SGEKIR---------------------ADECLDMDGIVAPGERVKDR 831

Query: 843 DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
            P  +  K       T R    E+    +V++S                 YR  R P +G
Sbjct: 832 APTMA--KSQPIHIGTERVMISEDATWRMVKLS-----------------YRQTRRPELG 872

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG+  +  P E++PF + G+ PD++ NPHG+PSRMT+G L
Sbjct: 873 DKFSSRHGQKGVTGLIVPQENMPFNEIGMCPDVIMNPHGYPSRMTVGKL 921



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 26/231 (11%)

Query: 33  KMILNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLG--APHIASFDFMLDEGLDLAVED 90
           KM +N    S  S+  + +K    P      FL T G    H+ SF+++L +GL   ++ 
Sbjct: 18  KMTINDYVSSYESISEVQEKWKLVPA-----FLETRGLVKQHLDSFNYLLTQGLQKIIKA 72

Query: 91  IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVA 150
            A  + +   +    N     +  P V     G+      P E R     YS P  V V 
Sbjct: 73  NARTDVD---QNFFWNYDHIYVDPPDVE---YGMRSEAITPHECRLRDMTYSAPIKVDVT 126

Query: 151 WSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           +  D +        +GR+PIML+S RC L N++  Q  +  E P + GGYF+V G EK+ 
Sbjct: 127 YVRDNQIRKARGLVIGRMPIMLRSARCVLANMSQEQFFKAKECPLDPGGYFVVKGAEKV- 185

Query: 211 RLLINNRRNHPIAIKRNAWKNRGLLFSD-LGVYIRSVKRDESATNNVLHFV 260
                      + ++  A  NR L+  D  G++   VK      N   + +
Sbjct: 186 -----------LLMQEQAVSNRILVEKDKTGMFCAVVKSKSDTANTQTNLI 225



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 13/91 (14%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY-----FGRDPA 819
            L+ G+NYYG + + SG  G  ++A IF G ++YQ+LRHMV DK   +         R P 
Sbjct: 955  LDYGFNYYGKDLLMSGETGEPLEAYIFMGPIYYQKLRHMVMDKMHARATGKVHNLTRQPL 1014

Query: 820  NKALED---KLGP---DGLVYVGAK--LNER 842
                +D   +LG    D L+  GA   LNER
Sbjct: 1015 EGRAKDGGLRLGEMERDALLAYGASNLLNER 1045


>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
           [Saccoglossus kowalevskii]
          Length = 1175

 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 197/698 (28%), Positives = 300/698 (42%), Gaps = 127/698 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        ++KE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFRHLFKN---LMKEVRIYAQKFIDKGKDFNLELAIKTRIITDGLKYSLATGNWGEQKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + + PRQL    WG ICP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLARPRQLHNTLWGMICP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  S   +A  +
Sbjct: 512 AETPEGQAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAASAINEATKI 567

Query: 541 MLDGRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT 598
            ++G  VG   D  Q+  +L    R + I+  ++    +I      EK + +Y      T
Sbjct: 568 FVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDI-----REKEIRIY------T 616

Query: 599 GPGRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDIC 629
             GR+ RP++ +                             A+G +E+I T E+  + + 
Sbjct: 617 DAGRICRPLLIVEKQKLLLKKKHIDMLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA 676

Query: 630 ITMKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
           +T  +       Y    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  
Sbjct: 677 MTPDDLQEKGMGYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVY 736

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
             N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+
Sbjct: 737 ITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIM 796

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           N S+ ERGF     F+S+F      Y  Y  +    G+D    Q ++F            
Sbjct: 797 NLSAVERGF-----FRSVF------YRSYRDQESKKGLD----QEEVF------------ 829

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM----YSYWKESENRYVTC 859
                +  D         A+ DKL  DG++  G++++  D +     +  +  +    T 
Sbjct: 830 -----EKPDRESCQGMRMAVYDKLDDDGIIAPGSRVSGDDVLIGKTVTLPENDDELEGTT 884

Query: 860 RYSGKEEMCVEVVRMSSGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQKG 913
           R   K +    + R  +G  +   V+ N      C  I  R  R P +GDKFASR GQKG
Sbjct: 885 RRFTKRDSSTFMRRTETGIVDQVMVSINQEGYKFCK-IKIRSVRIPQIGDKFASRHGQKG 943

Query: 914 ICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 944 TCGIQYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHL 981



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 13/152 (8%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEF--EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNK- 128
            + SFD  +   +   VED  PIE   E    T+++ +    I + +        H+ K 
Sbjct: 43  QLDSFDEFIQMSVQRIVEDSPPIELQAEATHTTIEVEVPTRYILKFEQIYLSKPTHWEKD 102

Query: 129 -----YYPTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCH 178
                  P EAR     YS P  V    T+    D        K  +G++PIML+S  C 
Sbjct: 103 GAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGDEPQETQHQKTFIGKIPIMLRSTYCL 162

Query: 179 LRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           L  LT   L E  E P + GGYFI+ G EK++
Sbjct: 163 LSGLTDRDLTELNECPLDPGGYFIINGSEKVL 194



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  +  QIF G  +YQRL+HMV DK  ++
Sbjct: 1017 EYGYHLRGNEVLYNGFTGRKLGTQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|83765718|dbj|BAE55861.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1180

 Score =  213 bits (542), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 258/1023 (25%), Positives = 425/1023 (41%), Gaps = 204/1023 (19%)

Query: 47  KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEI--- 98
           K+LTD       DK N    FL   G    HI S++++++  L   VE  + I  +I   
Sbjct: 45  KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHN 103

Query: 99  -YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
            Y K   + +     ++ +   GP G   +   P E R   + Y+ P  V   +    + 
Sbjct: 104 FYIKFTDIYLGAPRRADEQQDVGP-GFTGSTVSPHECRLRDTTYAAPIQVDFEYIRGRQR 162

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                  +GR+P+ML+S +C L + TPA++    E P + GGYFIV G EK+        
Sbjct: 163 VKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKV-------- 214

Query: 218 RNHPIAIKRNAWKNRGLLFSD------------------LGVYIRSVKRDESATNNVLH- 258
               I ++    KNR ++ +D                     YI   K      +NVL  
Sbjct: 215 ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSE 270

Query: 259 ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIF 303
               V    A  + + ++ + L+  +  +++E            GI+TQ  +  + G   
Sbjct: 271 DIPIVILLKAMGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRI 330

Query: 304 K----EKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQ 354
           K    ++  Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++     
Sbjct: 331 KINRGKQNNYRRTHVQEAVE----AIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKN 386

Query: 355 GMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSI 406
               +D  D +  + +   G L    +  L KK     K     VL + +   AF A ++
Sbjct: 387 DPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTV 446

Query: 407 ESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
            S  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F+
Sbjct: 447 MSMHSNHITQGMNRAISTGNWSLKRFRMERAG---VTHVLSRLSYIAALGMMTRISSQFE 503

Query: 462 EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI 514
           + R  S PR L+   +G +C   TP+G  CGL      + H+TTN    E  P      I
Sbjct: 504 KTRKVSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITTN---DEEGP------I 554

Query: 515 PSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
            +++  LG   ++ +   +        + ++G  +   L +   S +   R L+ +G +I
Sbjct: 555 RNLIFMLGAEDISTLGGKELYGPGCYTISINGTPMA--LTRRPKSFLNAFRRLRRMG-RI 611

Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----------------------- 609
            + + I Y+   ++       +++ T  GR+ RP++                        
Sbjct: 612 SEFVSI-YINHHQRA------VHVATDDGRICRPLIVVENGKNRVRSHHLKKLREGTMSF 664

Query: 610 ---LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
              LA G +E++   E+    I I  K+     TTH E+     L  +A LIP P  NQS
Sbjct: 665 DDFLAQGLVEYLDVNEENDSLIAIYEKDITEA-TTHLEIEPFTVLGAVAGLIPYPHHNQS 723

Query: 667 PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
           PRN YQC MGKQ +G    N   +    LY +  P  P  +    +    D  P G NA+
Sbjct: 724 PRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGHNAM 783

Query: 727 VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
           VAV+SY+GYD+EDA++LNK S                                 VD    
Sbjct: 784 VAVMSYSGYDIEDALVLNKGS---------------------------------VDRGFG 810

Query: 787 QAQIFF-GVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAKLNERDP 844
           + Q+F   V + +   +   D     +Y    P  K AL   L  DGL  VG ++N  + 
Sbjct: 811 RCQVFKKSVANLKSYSNGTKDILMPPEYDNDAPIRKHAL---LESDGLAAVGEQVNAGEV 867

Query: 845 MYSYWKESENRYVTCRYSGKE------------------EMCVEVVRMSSGFTEGGSVTP 886
             +  K + ++ +   + G +                     ++ V +S+   E   +  
Sbjct: 868 YIN--KSTPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIK- 924

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               +  R  R P VGDKF+SR GQKG+  +     D+PFTD G+ PDI+ NPHGFPSRM
Sbjct: 925 ----VLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRM 980

Query: 947 TIG 949
           T+G
Sbjct: 981 TVG 983



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1017 ILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1076

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1077 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1119

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1120 DVCEQCGFMGY 1130


>gi|355712756|gb|AES04455.1| polymerase III polypeptide B [Mustela putorius furo]
          Length = 736

 Score =  213 bits (542), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 177/591 (29%), Positives = 268/591 (45%), Gaps = 81/591 (13%)

Query: 396 DIYAAFRASSIESA--MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRA 453
           D+    R   I +   M N ++TGN S  +      M   G   + + ++R+ Y+S    
Sbjct: 3   DVVKHMRQDQITNGNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGM 55

Query: 454 VHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVL 511
           + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +    +
Sbjct: 56  MTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPI 115

Query: 512 AQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG-- 569
            ++   L    +  L     S P    +V L+G I+G I D     LV   R+++  G  
Sbjct: 116 VKLAGNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--RKLVNTFRLMRRAGYI 172

Query: 570 -EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAAG 613
            E +  S  +               +Y+ +  GR+ RP +                LA G
Sbjct: 173 NEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQG 221

Query: 614 N-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPD 662
                       +E++   E+   +I +  +      TTH E+     L   A LIP P 
Sbjct: 222 YRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTLLGVCAGLIPYPH 280

Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
            NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +    + ++ +  P G
Sbjct: 281 HNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAG 340

Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
            NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+     Y  +T +  V 
Sbjct: 341 QNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVM 395

Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER 842
           G M+ A     +  ++ L           D  G     + +E+K     LV        +
Sbjct: 396 GPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---QVLVNKSMPTVTQ 441

Query: 843 DPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT 900
            P+       + +Y  V   Y G  +  +E V +SS   +   +      +  R  R P 
Sbjct: 442 IPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPE 496

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKF+SR GQKG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 497 IGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 547



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 584 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 643

Query: 828 GPDGLVYVGAKLNERDPMYSY 848
             DG + +G    ERD +  Y
Sbjct: 644 SRDGGLRLGEM--ERDCLIGY 662


>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
          Length = 1173

 Score =  213 bits (542), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 195/692 (28%), Positives = 301/692 (43%), Gaps = 116/692 (16%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-- 376
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +  GG L  
Sbjct: 343 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLGGPLLS 402

Query: 377 ------YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                 +  L+K+ +      +   K+ +I  A +   I   +   LATGN +  K +  
Sbjct: 403 FLFRGMFKNLIKEVRLYAQKFVDRGKDFNIELAVKTRIISDGLRYSLATGNWADQKKAH- 461

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 462 ---QARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 515

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    +  + ++
Sbjct: 516 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSSIADSTKIFVN 571

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + +V   R  +       + ++T  GR+
Sbjct: 572 GCWVGIHRD--PELLMSTLRKLRRQMDIIVSEVSMVRDIRDRE-------IRIYTDAGRI 622

Query: 604 LRPVMNL---------------------------AAGNIEWIGTFEQVFMDICIT----- 631
            RP++ +                           ++G +E+I T E+  + I +T     
Sbjct: 623 CRPLLIVDSEGRLLMKKKDIDLLKDRDYGWQSLVSSGVVEYIDTLEEETIMIAMTPNDLR 682

Query: 632 --MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
               + Y    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  
Sbjct: 683 QNRDDTYCANFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHV 742

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++I+N S+ E
Sbjct: 743 RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSIIINASAVE 802

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           RGF     F+S+F       +Y   E    G      +       +  Q +RH       
Sbjct: 803 RGF-----FRSVFYR-----SYRDAEVRRLGDQDEQFEKP---NRLTCQGMRH------- 842

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS-----YWKESENRYVTCRYSGK 864
                       A+ DKL  DG++  G +++  D +          E E   VT +Y+ K
Sbjct: 843 ------------AIYDKLDEDGIIAPGVRVSGDDVVIGKTITLMENEDELESVTKKYT-K 889

Query: 865 EEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
            +    + R  +G  +   +T N        I  R  R P +GDKFASR GQKG C +++
Sbjct: 890 RDASTFLRRSETGVVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 949

Query: 920 PAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 950 RQEDMPFTSEGITPDIIINPHAIPSRMTIGHL 981



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GYN  G E MY+G  G  + AQIF G  +YQRL+HMV DK  ++
Sbjct: 1017 EYGYNLRGNEIMYNGYTGRKINAQIFIGPTYYQRLKHMVDDKIHSR 1062



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSW--DGKA------GGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V ++ +   DG+         TF   +G++PIML+S  C L  +
Sbjct: 111 PNEARLRNLTYSAPLYVDISKTIIRDGEDPIYKPHTKTF---IGKIPIMLRSTYCLLNGM 167

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + G YFI+ G EK++
Sbjct: 168 TDRDLTELNECPFDPGAYFIINGSEKVL 195


>gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryptococcus neoformans]
          Length = 1114

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 251/972 (25%), Positives = 379/972 (38%), Gaps = 200/972 (20%)

Query: 127  NKYYPTEARQTRSVYSGPFNVT--------------VAWSW------DGKAGGTFTKE-- 164
            N  +P EAR     YS P  V               V   W      DG+  G   ++  
Sbjct: 125  NMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQPAVGDDGEVEGAEEEKTS 184

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            +G+VP+M++S  C L  L   Q  E GE P + GGYFI+ G EK++        NH    
Sbjct: 185  IGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVF 244

Query: 225  KR------------NAWKNRGLLFSDLGVYIRSVKRDESATNNVLH-------------- 258
             +            N+ K +G   ++    +R   R    T  V+               
Sbjct: 245  LKAAPARFTYFAEINSQKEKGGRVAN-HTEVRMYARASGTTGGVIRVSLPYTKVDIPLVV 303

Query: 259  -FVTNG--SARFMFSH----RKSMCLLGMMQSLHEEGIHTQ-HDSKVFF----GQIFKEK 306
             F   G    R + SH     +   LL M+Q   EE    Q  D+ + F    GQ   EK
Sbjct: 304  VFRALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDRDTALDFIGRRGQ--HEK 361

Query: 307  LQYDLRHLNEVEICDYMLTNCILPHLDDYW----DKFLCLSHMTCKLFHVVQGMVQLDSE 362
                 R     +I    L    LPH+         K   L +M  +L     G  +LD  
Sbjct: 362  APRAQRQRAAFDI----LHKEFLPHVSTAEGFESKKAYFLGYMVHRLCMAALGRRELDDR 417

Query: 363  DSIMLQEIMTGGSLYLQLLK----KEKSGTSAVLK-------ESDIYAAFRASSIESAMT 411
            D    + +   G L  ++      K +      LK       E  +  A R ++I   + 
Sbjct: 418  DHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNKEFALNMAIRPNTITDGLK 477

Query: 412  NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQL 471
              LATGN     N+   + Q          ++ +R  +    + R S     ++++PRQL
Sbjct: 478  YALATGNWGKRDNTRAGVSQVLNSYTFTSTLSHLRRTN--TPIGRDS-----KAAKPRQL 530

Query: 472  RTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP-SKVLAQIPSVLVSLGMLPLTPVI 530
                WG +CP  TP+G+ CGL+     N  +  YI      A +   L   G+  L+   
Sbjct: 531  HDTHWGMVCPAETPEGSACGLVK----NLALMSYISVGSYSAPVMEFLEEWGLEDLSEY- 585

Query: 531  QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL 590
            Q  P  A  V ++G  +G   D  A +L   L  ++  G ++   + IV   R E+ + L
Sbjct: 586  QDAP-TATKVFVNGVWMGIHRD--APTLHNNLLQMR-RGGQLKYEVSIVRDIR-ERELRL 640

Query: 591  YPG-------LYLFTGPGRMLRPVMN---------------------LAAGNIEWIGTFE 622
            Y         L++   P + LR   +                     L+ G +E++   E
Sbjct: 641  YTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLLSEGIVEYVDAAE 700

Query: 623  QVFMDICITMKEAYPGIT----------------------------------THRELSKT 648
            +  + I +T ++     T                                  TH E+  +
Sbjct: 701  EETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQQYTHMEIHPS 760

Query: 649  DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
              L   A++IP PD NQSPRN YQ  MGKQ MG    N++ +    +  L  P  P    
Sbjct: 761  MILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVCLTNYQLRMDTMVNVLYYPQKPLATT 820

Query: 709  VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
               + L     P G NAIVA++ Y+GY+ ED++I+N+SS +RG     +F+S++      
Sbjct: 821  RSMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRG-----LFRSLYFR---- 871

Query: 769  YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
             +Y  TE M   V    ++       +   R++H   D++                 KL 
Sbjct: 872  -SYTDTEKMKGMVKAETIEKPDRNETL---RMKHGTGDRYA----------------KLD 911

Query: 829  PDGLVYVGAKLNERDPMYSYW----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
             DGLV  G  +N  D +        ++SE      +   K ++   +     G  +   +
Sbjct: 912  VDGLVAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVML 971

Query: 885  TPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
            + N        I  R  R P +GDKFASR GQKG   + +  ED+PFT  GLVPDI+ NP
Sbjct: 972  STNGEGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINP 1031

Query: 940  HGFPSRMTIGFL 951
            H  PSRMTIG L
Sbjct: 1032 HAIPSRMTIGHL 1043



 Score = 41.6 bits (96), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
            GY   G E +Y G  G  +QAQ++FG  +YQRL+H
Sbjct: 1080 GYQSRGFELLYHGHTGRKLQAQVYFGPTYYQRLKH 1114


>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
           SJ-2008]
          Length = 1141

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 244/925 (26%), Positives = 364/925 (39%), Gaps = 168/925 (18%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVP-----IMLKSKRCHLRNLTP 184
           +P EAR     Y+ P  + V      + G     +  RVP     +ML+S  C L  L  
Sbjct: 91  FPNEARIRDLTYASPLFIDVIKETVSELGVVDKHKYSRVPFGSLPVMLRSSYCVLHGLGD 150

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN----RRNHPI---------AIKRN 227
             LI+ GE P + GGYFIV G EK++    R+  N     ++  P          ++   
Sbjct: 151 KDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEK 210

Query: 228 AWKNRGLLFSDL-------GVYIRSVKRDES--ATNNVLHFVTNGSARFMFSHRKSMCLL 278
           + +N   L   L        V +  VK+D         L F+++        +     + 
Sbjct: 211 SSRNPSTLSMKLCRSPGAIRVSLPLVKQDIPLFVLYRALGFLSDKEIIDHILYEDDDEMF 270

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY--- 335
            +++   EEG   Q D  V    I K            + I   +L   +LPH+      
Sbjct: 271 ELLKESIEEGTVVQ-DQNVALDYIGKRSAPVGTPQEKRITIARDLLAKEVLPHIGTQEFC 329

Query: 336 -WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGTSA 390
              K   + ++  +L  V  G    D  D    + +   G    SL+  L KK  + T+ 
Sbjct: 330 ETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTR 389

Query: 391 VL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
            +       +E +I    +AS I       LATGN         + MQ    V  A+ +N
Sbjct: 390 HMQKCIENGREFNIALGLKASIITQGFRYALATGNW----GDQAKAMQTRAGV--AQVLN 443

Query: 444 RMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           R  +   +SH R V+     +E + + PRQL    WG +CP  TP+G  CGL+ +L+   
Sbjct: 444 RYNFVSTLSHLRRVNT-PIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMA 502

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
            IS    S  L +    L   G+  L  +       A  V ++G  VG   D +   L+ 
Sbjct: 503 YISVGSSSGPLIEF---LEECGVESLEEISTLQLSTATKVFVNGVWVGIHSDPVY--LIK 557

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM------------ 608
            L++L+   E I K + IV   R ++       + + +  GR  RP+M            
Sbjct: 558 SLKLLRRSLE-IDKEVSIVRDIREKE-------IRIQSDAGRPCRPLMVVRDNKLVITIE 609

Query: 609 ---NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT--------------------THREL 645
               L  G I+W     + F++     +E    I                     TH E+
Sbjct: 610 DIRKLRRGEIKWDNLIGEGFIEFLDVEEEEMSMIAMSTKVLNDECKNSSDVKISYTHCEI 669

Query: 646 SKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT----- 700
                L   A+ IP PD NQSPRN YQ  MGKQ MG    N+       L R+ T     
Sbjct: 670 HPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNF-------LLRMDTLSNIL 722

Query: 701 --PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
             P  P       + L     P G NA+VA+  Y+GY+ ED++I+N+S+ +RG     +F
Sbjct: 723 FYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRG-----LF 777

Query: 759 KSMFIELESGYNYYGTETMYS-GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +S F        Y   E+M   GV+    +      V+  + L +               
Sbjct: 778 RSFFYR-----TYTDQESMSRPGVNEEFCKPN-RGSVLRMKNLNY--------------- 816

Query: 818 PANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCVE 870
                  +KL  DGL+  G ++   D       P+    + ++   V         M   
Sbjct: 817 -------NKLDEDGLISPGVRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAM--- 866

Query: 871 VVRMSSGFTEGGSVTPNCAY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
             R  +G  +   VT    Y    +  R  R P +GDKFASR  QKG   +    ED+PF
Sbjct: 867 -RRTETGIVDTVIVTNKDGYKFSKVKIRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPF 925

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           T  G+VPDI+ NPH  PSRMTIG L
Sbjct: 926 TSDGIVPDIIINPHAIPSRMTIGHL 950



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+   G E MY+G+ G  ++AQIFFG  +YQRL+HMV DK   +
Sbjct: 987  GFQQRGLEVMYNGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHAR 1030


>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
          Length = 1099

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 203/704 (28%), Positives = 304/704 (43%), Gaps = 139/704 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 267 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 326

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 327 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 383

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG +CP
Sbjct: 384 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 436

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 437 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 492

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 493 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 543

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 544 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 603

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 604 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 663

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 664 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 723

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +R F     F+S+F      Y  Y  +    G D    Q ++F        Q +RH 
Sbjct: 724 SAVDRSF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 767

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
                             A+ DKL  DGL+  G +++  D         P      ES N
Sbjct: 768 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 809

Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
           R    RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFAS
Sbjct: 810 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 862

Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 863 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 906



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 35  PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 94

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 95  DLCELNECPLDPGGYFIINGSEKVL 119



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 944 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 987


>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
           50504]
 gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
           50504]
          Length = 1141

 Score =  212 bits (540), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 243/918 (26%), Positives = 365/918 (39%), Gaps = 154/918 (16%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVP-----IMLKSKRCHLRNLTP 184
           +P EAR     Y+ P  + V      + G     +  RVP     +ML+S  C L  L  
Sbjct: 91  FPNEARTRDLTYASPLFIDVIKETVSELGVVDKHKYSRVPFGSLPVMLRSSYCVLHGLGD 150

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN----RRNHPI---------AIKRN 227
             LI+ GE P + GGYFIV G EK++    R+  N     ++  P          ++   
Sbjct: 151 KDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEK 210

Query: 228 AWKNRGLLFSDLG---VYIRS----VKRDES--ATNNVLHFVTNGSARFMFSHRKSMCLL 278
           + +N   L   L    V IR     VK+D         L F+++        +     + 
Sbjct: 211 SSRNPSTLSMKLCRSPVAIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYEDDDEMF 270

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY--- 335
            +++   EEG+  Q D  V    I K            + +   +L   +LPH+      
Sbjct: 271 ELLKESIEEGMVVQ-DQNVALDYIGKRTAPVGTPQEKRIMMAKDLLAKEVLPHIGTQEFC 329

Query: 336 -WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGTSA 390
              K   + ++  +L  V  G    D  D    + +   G    SL+  L KK  + T+ 
Sbjct: 330 ETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTR 389

Query: 391 VL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
            +       +E +I    +AS I       LATGN         + MQ    V  A+ +N
Sbjct: 390 HMQKCIENGREFNIALGLKASIITQGFRYALATGNW----GDQAKAMQTRAGV--AQVLN 443

Query: 444 RMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           R  +   +SH R V+     +E + + PRQL    WG +CP  TP+G  CGL+ +L+   
Sbjct: 444 RYNFVSTLSHLRRVNT-PIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMA 502

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
            IS    S  L +    L   G+  L  +       A  V ++G  +G   D +   LV 
Sbjct: 503 YISVGSSSGPLIEF---LEECGVESLEEISNFQLNTATKVFVNGVWIGIHSDPVY--LVK 557

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM------------ 608
            L++L+   E + K + IV   R ++       + + +  GR  RP+M            
Sbjct: 558 SLKLLRRSLE-MDKEVSIVRDIREKE-------IRIQSDAGRPCRPLMVVKDNKLVITEE 609

Query: 609 ---NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT--------------------THREL 645
               L  G I+W     + F++     +E    I                     TH E+
Sbjct: 610 DIGRLRRGEIKWDNLIGEGFIEFLDVEEEEMSMIAMSTKVLDDERKSSSDVKISYTHCEI 669

Query: 646 SKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT----- 700
                L   A+ IP PD NQSPRN YQ  MGKQ MG    N+       L R+ T     
Sbjct: 670 HPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNF-------LLRMDTLSNIL 722

Query: 701 --PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
             P  P       + L     P G NA+VA+  Y+GY+ ED++I+N+S+ +RG     +F
Sbjct: 723 FYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSVIMNQSAIDRG-----LF 777

Query: 759 KSMFIELESGYNYYGTETMYS-GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +S F        Y   E+M   GV+    +      V+  + L +   D     +   R 
Sbjct: 778 RSFFYR-----TYTDQESMSRPGVNEEFCKPN-RGSVLRMKNLNYNKLDDDGLINPGTRV 831

Query: 818 PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
             +  L  K+ P   +    +  +  P+Y Y   S                  + R  +G
Sbjct: 832 TGDDVLIGKITP---ILDPERSTKETPVYVYKDSS----------------TAMRRTETG 872

Query: 878 FTEGGSVTPNCAY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
             +   VT    Y    +  R  R P +GDKFASR  QKG   +    ED+PFT  G+VP
Sbjct: 873 IVDTVIVTNKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVP 932

Query: 934 DIVFNPHGFPSRMTIGFL 951
           DI+ NPH  PSRMTIG L
Sbjct: 933 DIIINPHAIPSRMTIGHL 950



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+   G E MY+G+ G  ++AQIFFG  +YQRL+HMV DK   +
Sbjct: 987  GFQQRGLEVMYNGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHAR 1030


>gi|317139935|ref|XP_001817863.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus oryzae
            RIB40]
          Length = 1218

 Score =  212 bits (540), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 258/1021 (25%), Positives = 423/1021 (41%), Gaps = 200/1021 (19%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEI--- 98
            K+LTD       DK N    FL   G    HI S++++++  L   VE  + I  +I   
Sbjct: 83   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHN 141

Query: 99   -YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             Y K   + +     ++ +   GP G   +   P E R   + Y+ P  V   +    + 
Sbjct: 142  FYIKFTDIYLGAPRRADEQQDVGP-GFTGSTVSPHECRLRDTTYAAPIQVDFEYIRGRQR 200

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                   +GR+P+ML+S +C L + TPA++    E P + GGYFIV G EK+        
Sbjct: 201  VKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKV-------- 252

Query: 218  RNHPIAIKRNAWKNRGLLFSD-------LGVYIRSVKRDESA-----------TNNVLH- 258
                I ++    KNR ++ +D         V   S +R   +            +NVL  
Sbjct: 253  ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSE 308

Query: 259  ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIF 303
                V    A  + + ++ + L+  +  +++E            GI+TQ  +  + G   
Sbjct: 309  DIPIVILLKAMGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRI 368

Query: 304  K----EKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQ 354
            K    ++  Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++     
Sbjct: 369  KINRGKQNNYRRTHVQEAVE----AIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKN 424

Query: 355  GMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSI 406
                +D  D +  + +   G L    +  L KK     K     VL + +   AF A ++
Sbjct: 425  DPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTV 484

Query: 407  ESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
             S  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F+
Sbjct: 485  MSMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHV---LSRLSYIAALGMMTRISSQFE 541

Query: 462  EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI 514
            + R  S PR L+   +G +C   TP+G  CGL      + H+TTN    E  P      I
Sbjct: 542  KTRKVSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITTN---DEEGP------I 592

Query: 515  PSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
             +++  LG   ++ +   +        + ++G  +   L +   S +   R L+ +G +I
Sbjct: 593  RNLIFMLGAEDISTLGGKELYGPGCYTISINGTPMA--LTRRPKSFLNAFRRLRRMG-RI 649

Query: 573  PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----------------------- 609
             + + I Y+   ++       +++ T  GR+ RP++                        
Sbjct: 650  SEFVSI-YINHHQRA------VHVATDDGRICRPLIVVENGKNRVRSHHLKKLREGTMSF 702

Query: 610  ---LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
               LA G +E++   E+    I I  K+     TTH E+     L  +A LIP P  NQS
Sbjct: 703  DDFLAQGLVEYLDVNEENDSLIAIYEKDITEA-TTHLEIEPFTVLGAVAGLIPYPHHNQS 761

Query: 667  PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
            PRN YQC MGKQ +G    N   +    LY +  P  P  +    +    D  P G NA+
Sbjct: 762  PRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGHNAM 821

Query: 727  VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
            VAV+SY+GYD+EDA++LNK S                                 VD    
Sbjct: 822  VAVMSYSGYDIEDALVLNKGS---------------------------------VDRGFG 848

Query: 787  QAQIFF-GVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAKLNERD- 843
            + Q+F   V + +   +   D     +Y    P  K AL   L  DGL  VG ++N  + 
Sbjct: 849  RCQVFKKSVANLKSYSNGTKDILMPPEYDNDAPIRKHAL---LESDGLAAVGEQVNAGEV 905

Query: 844  ---------------PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
                           P     +  +       Y   +   ++ V +S+   E   +    
Sbjct: 906  YINKSTPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIK--- 962

Query: 889  AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
              +  R  R P VGDKF+SR GQKG+  +     D+PFTD G+ PDI+ NPHGFPSRMT+
Sbjct: 963  --VLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTV 1020

Query: 949  G 949
            G
Sbjct: 1021 G 1021



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1055 ILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1114

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1115 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1157

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1158 DVCEQCGFMGY 1168


>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
          Length = 1174

 Score =  212 bits (539), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 190/694 (27%), Positives = 299/694 (43%), Gaps = 119/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
               +L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRALFKTLMKEVRMYAQKFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAH- 460

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG +CP  T
Sbjct: 461 ---QARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           G  VG   D  Q+  +L    R + I+  ++    +I   +           + ++T  G
Sbjct: 571 GCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMVRDIQDRE-----------IRIYTDAG 619

Query: 602 RMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT- 631
           R+ RP++ +                             A G +E+I T E+    I ++ 
Sbjct: 620 RICRPLLIVENCKLLLKKRHVDMLKQREYINFSWQELVATGVVEYIDTLEEETAMIAMSP 679

Query: 632 -----MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
                 K+AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N
Sbjct: 680 EDLRQGKDAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITN 739

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
           +  +     + LQ P  P       + L     P G N++VA++SYTGY+ ED++I+N S
Sbjct: 740 FHVRMDTLAHVLQYPQKPLVTTRSMEYLRFRELPAGINSVVAILSYTGYNQEDSVIMNAS 799

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           + ERGF     F+S + + ES  +    ET                   H Q +R+    
Sbjct: 800 AVERGFFRSVFFRS-YKDQESKRSADQEETFEKPFRD------------HCQGMRN---- 842

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM----YSYWKESENRYVTCRYS 862
                          A+ DKL  DG++  G +++  D +     +  +  ++   T +  
Sbjct: 843 ---------------AIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDDLESTTKKF 887

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 888 SKRDASTFLRHSETGIVDQVMLTLNAEGNKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 947

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 948 QYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 981



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1017 EYGYHLRGNEVLYNGHTGRKLNAQVFLGPTYYQRLKHMVDDKIHSR 1062



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  +   
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVHKEGEEQVETQHQKTFIGKIPIMLRSTYCLLNGMNDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194


>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
           [Encephalitozoon cuniculi GB-M1]
 gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
           Short=RNA polymerase II subunit 2; Short=RNA polymerase
           II subunit B2
 gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
           [Encephalitozoon cuniculi GB-M1]
          Length = 1141

 Score =  212 bits (539), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 237/922 (25%), Positives = 361/922 (39%), Gaps = 162/922 (17%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVP-----IMLKSKRCHLRNLTP 184
           +P EAR     Y+ P  + V      + G     +  RVP     +ML+S  C L  L  
Sbjct: 91  FPNEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGD 150

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN----RRNHPI---------AIKRN 227
             LI+ GE P + GGYFIV G EK++    R+  N     ++  P          ++   
Sbjct: 151 KDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEK 210

Query: 228 AWKNRGLLFSDL-------GVYIRSVKRDES--ATNNVLHFVTNGSARFMFSHRKSMCLL 278
           + +N   L   L        V +  VK+D         L F+++        +     + 
Sbjct: 211 SSRNPSTLSMKLCRSPGVIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYEDDEEMF 270

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY--- 335
            +++   EEG   Q D  V    I K            + +   +L   +LPH+      
Sbjct: 271 ELLKESIEEGTVVQ-DQNVALDYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFC 329

Query: 336 -WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGTSA 390
              K   + ++  +L  V  G    D  D    + +   G    SL+  L KK    T+ 
Sbjct: 330 ETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTR 389

Query: 391 VL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
            +       +E +I    +AS I       LATGN     +    +   +G   +    N
Sbjct: 390 HMQKCIENGREFNIALGLKASIITQGFRYALATGNWG---DQAKAMQTRAGVAQVLNRYN 446

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            +  +SH R V+     +E + + PRQL    WG +CP  TP+G  CGL+ +L+    IS
Sbjct: 447 FVSTLSHLRRVNT-PIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYIS 505

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
               S  L +    L   G+  L  +  S  + A  + ++G  VG   D +   L+  L+
Sbjct: 506 VGSSSGPLVEF---LEECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVG--LIKSLK 560

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM--------------- 608
           +L+   E + K + IV   R ++       + + +  GR  RP++               
Sbjct: 561 LLRRSLE-MDKEVSIVRDIREKE-------IRVQSDAGRPCRPLLVVKDNKLVITAEDIR 612

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT--------------------THRELSKT 648
            L  G I+W       F++     +E    I                     TH E+   
Sbjct: 613 KLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPA 672

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT-------P 701
             L   A+ IP PD NQSPRN YQ  MGKQ MG    N+       L R+ T       P
Sbjct: 673 LILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNF-------LLRMDTLSNILFYP 725

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P       + L     P G NA+VA+  Y+GY+ ED++I+N+S+ +RG     +F+S 
Sbjct: 726 QKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRG-----LFRSF 780

Query: 762 FIELESGYNYYGTETMYS-GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
           F        Y   E+M   GV+    +      V+  + L +                  
Sbjct: 781 FYR-----TYTDQESMSRPGVNEEFCKPS-RGAVLRMKNLNY------------------ 816

Query: 821 KALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
               +KL  DGL+  G ++   D       P+    + ++   V         M     R
Sbjct: 817 ----NKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAM----RR 868

Query: 874 MSSGFTEGGSVTPNCAY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
             +G  +   VT    Y    +  R  R P +GDKFASR  QKG   +    ED+PFT  
Sbjct: 869 TETGIVDTVIVTNKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSE 928

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G+VPDI+ NPH  PSRMTIG L
Sbjct: 929 GIVPDIIINPHAIPSRMTIGHL 950



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+   G E MY+G+ G  ++AQ+FFG  +YQRL+HMV DK   +
Sbjct: 987  GFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHAR 1030


>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
          Length = 807

 Score =  212 bits (539), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 197/678 (29%), Positives = 292/678 (43%), Gaps = 135/678 (19%)

Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYA----- 399
           M  +L     G  +LD  D    + +   G L   L +        +LKE  IYA     
Sbjct: 1   MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFR---GMFKNLLKEVRIYAQKFID 57

Query: 400 ---------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY--- 447
                    A +   I   +   LATGN    K +     QA   V  ++ +NR+ +   
Sbjct: 58  RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKA----HQARAGV--SQVLNRLTFAST 111

Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYI 506
           +SH R ++     ++ + ++PRQL    WG +CP  TP+G   GL+ +L     IS    
Sbjct: 112 LSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQ 170

Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
           PS +L      L    M  L  +  +    A  + ++G  VG   D     L+  LR L+
Sbjct: 171 PSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKD--PEQLMNTLRKLR 224

Query: 567 IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL---------------- 610
              + I   + ++   R  +       + ++T  GR+ RP++ +                
Sbjct: 225 RQMDIIVSEVSMIRDIRERE-------IRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLK 277

Query: 611 -------------AAGNIEWIGTFEQVFMDICITMKE------AYPGITTHRELSKTDFL 651
                        A+G +E+I T E+  + + +T  +      AY    TH E+  +  L
Sbjct: 278 EREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMIL 337

Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
              A++IP PD NQSPRN YQ  MGKQ MG    N+  +     + L  P  P       
Sbjct: 338 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSM 397

Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
           + L     P G N+IVA+ SYTGY+ ED++I+N+S+ +RGF     F+S+F      Y  
Sbjct: 398 EYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRS 446

Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
           Y  +    G D    Q ++F        Q +RH                   A+ DKL  
Sbjct: 447 YKEQESKKGFD----QEEVFEKPTRETCQGMRH-------------------AIYDKLDD 483

Query: 830 DGLVYVGAKLNERD---------PMYSYWKESENRYVTCRYSGKEEMCVEVVRMS-SGFT 879
           DGL+  G +++  D         P      ES NR    RY+ ++  C   +R S +G  
Sbjct: 484 DGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNR----RYTKRD--CSTFLRTSETGIV 537

Query: 880 EGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
           +   VT N      C  I  R  R P +GDKFASR GQKG C +++  ED+PFT  G+ P
Sbjct: 538 DQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITP 596

Query: 934 DIVFNPHGFPSRMTIGFL 951
           DI+ NPH  PSRMTIG L
Sbjct: 597 DIIINPHAIPSRMTIGHL 614



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 652 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 695


>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
 gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
          Length = 1174

 Score =  212 bits (539), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 201/702 (28%), Positives = 305/702 (43%), Gaps = 135/702 (19%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 342 VLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 402 FLFR---GMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKK 458

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    +H E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 679 PDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ +YTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIAAYTGYNQEDSVIMNR 798

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ +RGF     F+S+F      Y  Y  +    G D    Q +IF              
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEIF-------------- 829

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESENRY 856
           +K   +   G      A+ DKL  DGL+  G +++  D         P      +S NR 
Sbjct: 830 EKPTRETCSG---MRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPETDDELDSTNR- 885

Query: 857 VTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRA 909
              RY+ ++  C   +R S +G  +   VT N      C  I  R  R P +GDKFASR 
Sbjct: 886 ---RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFASRH 939

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMT+G L
Sbjct: 940 GQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHL 981



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1017 EYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSR 1062


>gi|396082394|gb|AFN84003.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon romaleae
           SJ-2008]
          Length = 1110

 Score =  212 bits (539), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 243/1004 (24%), Positives = 416/1004 (41%), Gaps = 229/1004 (22%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           HI S+D+ +D  +   +     ++ +I   T  L  +   +  P +    V  +    +P
Sbjct: 23  HIESYDYFVDHEIKALMRANQIVDSDI-DHTFYLKYLDIRVGMPSIEENMVNYNV---FP 78

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA------ 185
            E R     YS    V + +  + +        +G++P+ML+S RCHLR           
Sbjct: 79  IECRLRDVTYSANIYVDIEYVRNRQIIVKRDVCIGKMPVMLRSSRCHLRKEAKGSIEGSR 138

Query: 186 ----QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGL------- 234
               ++ E  E P + GGYFI+ G E++            I I+    KNR +       
Sbjct: 139 TRDRKIKESQECPLDVGGYFIIRGIERV------------ILIQEQLSKNRIIIESGPKG 186

Query: 235 LFSDLGVYIRSVKRDESAT-NNVLHFVTNGSARFMFSHRKSMCL----LGMMQSLH-EEG 288
           LF+ +       K   S T  +  +++ N     MF+    + +    LG+ Q     E 
Sbjct: 187 LFASVTSSTDEHKSKTSVTIKDDCYYLKNS----MFNEEIPVVIVMKALGLTQDKEIAEC 242

Query: 289 IHTQHDSKVF--FGQ-IFKEKLQYDLRHL------------NEVEICDYMLTNCILPHLD 333
           +  ++   +   FG+ I KE    +   L            N +E    +L+  +LP++ 
Sbjct: 243 VGKEYFEIIVPSFGECILKEVFTKEQALLYISNYIRLRPEDNRIEEVLTILSEKVLPNVQ 302

Query: 334 ----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------ 383
               +   K + ++ M  +L      +++ D +D +  +     G L   L +       
Sbjct: 303 IEGCNLRKKGIYIALMIRRLTQTRLNILKEDDKDFVGNKRFELAGQLLSILFEDTFKRFN 362

Query: 384 ---EKSGTSAVLKESD-------IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQAS 433
              +KS    + K S         +   +A+ I S ++  ++TGN +  +      M+ S
Sbjct: 363 FELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLSRAISTGNWNLKRFR----MERS 418

Query: 434 GFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG 491
           G   +   ++R  Y+S    + +  S+F++ R  S PR L T +WG +CPV TP+G  CG
Sbjct: 419 G---VTHVLSRHSYISAVGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCG 475

Query: 492 LLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV-IQSIPEQALM-VMLDGRIVGY 549
           L+ +L    +I+    ++    +  ++  LG + +  V  + I ++ +  V L+G IVG 
Sbjct: 476 LVKNLALLAEITTNSDTR---PVLDLIFKLGAVDINSVYTREIHQEGMFSVFLNGDIVG- 531

Query: 550 ILDQIATSLVPKLRMLK---IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           I+D +    V + ++ +   +VG+ +      +Y  R E+       +++ +  GR+ RP
Sbjct: 532 IIDNV-DFFVEQFKLHRRKGLVGKFVS-----IYKVRTERV------IHIASDNGRVCRP 579

Query: 607 VMN-------------------------------------------------LAAGNIEW 617
           ++                                                  L  G IE+
Sbjct: 580 LIVIDKKKINQMIVSNEVDKCFEALNIPQKIEMEKGKSFLDCYLKYRSFSDLLEEGFIEY 639

Query: 618 IGTFEQVFMDICITMK-EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           +   E+   D  I ++ E     TTH E+S+   L  +A L+P P  NQSPRN YQC MG
Sbjct: 640 LDVNEE--NDCLIALRPEDIVEETTHLEISEFAILGYVAGLVPFPHHNQSPRNTYQCAMG 697

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ +G   LN + +    + +L     P       D ++ +  P G NA+VAV+SY+GYD
Sbjct: 698 KQAIGHISLNVKKRFDSVILQLTYTHRPMVSTKILDLINYNEIPAGQNAMVAVMSYSGYD 757

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           +EDA++LNK+S ERG     ++K+             T T+       M           
Sbjct: 758 IEDALVLNKASIERGLFRVEVYKT-------------TTTLLKKHSSGM----------- 793

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALED-------KLGPDGLVYVGAKLNERDPMYSYW 849
                          D    +P    L+D       K+  DG +YV    N+  P+   +
Sbjct: 794 --------------SDVLWPNPKESVLDDDGLGKPGKMVKDGTIYV----NKMSPIDGVY 835

Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYI----GYRIQRNPTVGDKF 905
           K          ++GK      + R    + +   +T +   +      R  R P +GDK 
Sbjct: 836 K----------FTGK------IHRGDPAYIDKVLITRSQDQVLIKTMLRQTRPPEIGDKL 879

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           +SR GQKG+  +    ED+PF D G+VPDI+ NPHGFPSRMT+G
Sbjct: 880 SSRHGQKGVVGLIVRQEDMPFNDQGVVPDIIMNPHGFPSRMTVG 923



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 751  GFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQT 810
             F    + ++  I    G++Y G +   SG  G+ + A IFFG V YQRL+HMV+DK   
Sbjct: 945  AFKENSVEETCNILASHGFSYSGKDCFTSGTTGAPLTAYIFFGPVFYQRLKHMVADKIHM 1004

Query: 811  KDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES 852
            +    R    +   +    DG + +G    ERD +  Y   S
Sbjct: 1005 RARGPRAILTRQPTEGRSKDGGLKLGEM--ERDCLIGYGASS 1044


>gi|238483555|ref|XP_002373016.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
 gi|220701066|gb|EED57404.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
          Length = 1218

 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 258/1023 (25%), Positives = 427/1023 (41%), Gaps = 204/1023 (19%)

Query: 47   KNLTDKNFGKPPDKQN---EFLLTLG--APHIASFDFMLDEGLDLAVEDIAPIEFEI--- 98
            K+LTD       DK N    FL   G    HI S++++++  L   VE  + I  +I   
Sbjct: 83   KSLTDP-INTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSSIIRSDIDHN 141

Query: 99   -YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
             Y K   + +     ++ +   GP G   +   P E R   + Y+ P  V   +    + 
Sbjct: 142  FYIKFTDIYLGAPRRADEQQDVGP-GFTGSTVSPHECRLRDTTYAAPIQVDFEYIRGRQR 200

Query: 158  GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
                   +GR+P+ML+S +C L + TPA++    E P + GGYFIV G EK+        
Sbjct: 201  VKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKV-------- 252

Query: 218  RNHPIAIKRNAWKNRGLLFSD-------LGVYIRSVKRDESA-----------TNNVLH- 258
                I ++    KNR ++ +D         V   S +R   +            +NVL  
Sbjct: 253  ----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSE 308

Query: 259  ---FVTNGSARFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIF 303
                V    A  + + ++ + L+  +  +++E            GI+TQ  +  + G   
Sbjct: 309  DIPIVILLKAMGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRI 368

Query: 304  K----EKLQYDLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQ 354
            K    ++  Y   H+ E VE     + + I+ H++    ++  K + ++HM  ++     
Sbjct: 369  KINRGKQNNYRRTHVQEAVE----AIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKN 424

Query: 355  GMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSI 406
                +D  D +  + +   G L    +  L KK     K     VL + +   AF A ++
Sbjct: 425  DPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTV 484

Query: 407  ESAMTNFLATG---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
             S  +N +  G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F+
Sbjct: 485  MSMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHV---LSRLSYIAALGMMTRISSQFE 541

Query: 462  EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI 514
            + R  S PR L+   +G +C   TP+G  CGL      + H+TTN    E  P      I
Sbjct: 542  KTRKVSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITTN---DEEGP------I 592

Query: 515  PSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
             +++  LG   ++ +   +        + ++G  +   L +   S +   R L+ +G +I
Sbjct: 593  RNLIFMLGAEDISTLGGKELYGPGCYTISINGTPMA--LTRRPKSFLNAFRRLRRMG-RI 649

Query: 573  PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----------------------- 609
             + + I Y+   ++       +++ T  GR+ RP++                        
Sbjct: 650  SEFVSI-YINHHQRA------VHVATDDGRICRPLIVVENGKNRVRSHHLKKLREGTMSF 702

Query: 610  ---LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQS 666
               LA G +E++   E+    I I  K+     TTH E+     L  +A LIP P  NQS
Sbjct: 703  DDFLAQGLVEYLDVNEENDSLIAIYEKDITEA-TTHLEIEPFTVLGAVAGLIPYPHHNQS 761

Query: 667  PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
            PRN YQC MGKQ +G    N   +    LY +  P  P  +    +    D  P G NA+
Sbjct: 762  PRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGHNAM 821

Query: 727  VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
            VAV+SY+GYD+EDA++LNK S                                 VD    
Sbjct: 822  VAVMSYSGYDIEDALVLNKGS---------------------------------VDRGFG 848

Query: 787  QAQIFF-GVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAKLNERDP 844
            + Q+F   V + +   +   D     +Y    P  K AL   L  DGL  VG ++N  + 
Sbjct: 849  RCQVFKKSVANLKSYSNGTKDILMPPEYDNDAPIRKHAL---LESDGLAAVGEQVNAGEV 905

Query: 845  MYSYWKESENRYVTCRYSGKE------------------EMCVEVVRMSSGFTEGGSVTP 886
              +  K + ++ +   + G +                     ++ V +S+   E   +  
Sbjct: 906  YIN--KSTPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIK- 962

Query: 887  NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
                +  R  R P VGDKF+SR GQKG+  +     D+PFTD G+ PDI+ NPHGFPSRM
Sbjct: 963  ----VLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRM 1018

Query: 947  TIG 949
            T+G
Sbjct: 1019 TVG 1021



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 1055 ILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 1114

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 1115 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 1157

Query: 883  SVTPNCAYIGY 893
             V   C ++GY
Sbjct: 1158 DVCEQCGFMGY 1168


>gi|398407271|ref|XP_003855101.1| DNA-directed RNA polymerase III subunit RET1 [Zymoseptoria tritici
           IPO323]
 gi|339474985|gb|EGP90077.1| hypothetical protein MYCGRDRAFT_84794 [Zymoseptoria tritici IPO323]
          Length = 1158

 Score =  211 bits (538), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 230/917 (25%), Positives = 377/917 (41%), Gaps = 176/917 (19%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPAQLI 188
           P E R     Y+ P  + V + +  ++G     +V  GR+P+ML+S +C L   + +++ 
Sbjct: 125 PNECRLRDMTYAAP--IYVDFVYPRQSGNVRKTDVMIGRMPMMLRSSKCVLNGRSESEMA 182

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
              E   + GGYFIV G EK+            I ++    KNR ++ +  GV   SV  
Sbjct: 183 WLNECAVDPGGYFIVRGQEKV------------ILVQEQLSKNRIIVETFKGVIQASVT- 229

Query: 249 DESATNNVLHFVTNGSARFMFSHRK-------SMCLLGM-MQSLHE-------------- 286
             +A      +V          H         ++ L  M +QS HE              
Sbjct: 230 SHTANVKTKTYVLVKKGHIYLKHNSLNEDIPVAIMLRAMGVQSDHEILLLAAGNDAQYQD 289

Query: 287 -----------EGIHTQHDSKVFFGQIFKEKLQYDLRHLNEV---EICDYMLTNCILPHL 332
                      EG  TQ  +  +     K     D    NE    +     L   I+PH+
Sbjct: 290 EFAPNLEVAAIEGAFTQEQALEYIATRLKPDRFGDKWKRNEKTPKQTALEKLAATIIPHV 349

Query: 333 D----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------SLYLQL 380
           +    ++  K L ++ MT ++   +     +D  D +  + +   G         L+   
Sbjct: 350 EVEGMNFRPKALYIAFMTRRVLMAMNDPKLVDDRDYVGNKRLELAGQMLALLFEDLFKDF 409

Query: 381 LKKEKSGTSAVLKESDIYAAFR--------ASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
           ++  K      LK+ +    F          + I S M   ++TGN +  +      M  
Sbjct: 410 VRMIKVNMDKTLKKPNPTQEFDPVRIVEQGEARITSGMERAISTGNWTLKRFR----MDR 465

Query: 433 SGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPC 490
           +G   +   ++R+ Y+S    + R  S F++ R  S PR L+   +G +C   TP+G  C
Sbjct: 466 AG---VTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEAC 522

Query: 491 GLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV--IQSIPEQALMVMLDGRIVG 548
           GL+ +L     I+    +   A +  ++  LG   +T V   +     A ++ ++G    
Sbjct: 523 GLVKNLALMTHITT---ADDEAPVRKMMYVLGAEDVTSVSGTEIYGNGAYIIFINGTPAA 579

Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
             L +     +   R  + +G +I + + I Y+         + G+++ T  GR+ RP++
Sbjct: 580 --LTRQPKQFLNGFRKFRRMG-RISEFVSI-YINHH------HNGVHIATDEGRVCRPLV 629

Query: 609 --------------------------NLAAGNIEWIGTFEQVFMDICITMKEAYPGITTH 642
                                      L+ G +E++   E+   +I +  K+     TTH
Sbjct: 630 VVEKGKSKVTVRFLESLRKGTMDFDDALSRGIVEYLDVNEENDSNIAVYEKQIDEH-TTH 688

Query: 643 RELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPA 702
            E+     L  +A LIP P  NQSPRN YQ  +  Q +G    N   +    LY +  P 
Sbjct: 689 LEIEPFTILGAVAGLIPYPHHNQSPRNTYQACLPPQAIGAIAYNQFTRIDTLLYLMVYPQ 748

Query: 703 SPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
            P       + +  D  P G NA+VAV+SY+GYD+EDA++LNK+S +RGF    +FK + 
Sbjct: 749 KPMVTTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKIS 808

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
           + L+S  N Y                                      +D  G   A   
Sbjct: 809 MPLKSYGNGY--------------------------------------QDRLGDRDAKNT 830

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG----- 877
              K+G DGLV VG+++   D MY   ++  N+        ++E     + MS       
Sbjct: 831 RHRKIGKDGLVEVGSEIESSD-MYMLKEQPMNQASAI---PQKEQKWSPMHMSYKLPDPC 886

Query: 878 FTEGGSVTPNCA-----YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
           + +   +T N A      I  R  R P +GDKF+SR GQKG+  +     D+PF+DSG++
Sbjct: 887 YADKVQITTNEANSTIIKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQVDMPFSDSGVI 946

Query: 933 PDIVFNPHGFPSRMTIG 949
           PDI+ NPHGFPSRMT+G
Sbjct: 947 PDIIMNPHGFPSRMTVG 963



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 17/154 (11%)

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
             ++  K  Y   F    +       ++ G++Y G + + SG+ G  +   +FFG ++YQ+
Sbjct: 974  GVLAGKQEYGTAFGGSKVEDMGATLVKHGFSYSGKDCLTSGITGESLPMYVFFGPIYYQK 1033

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
            L+HMV DK  ++    R    +   +     G + +G    ERD + +Y           
Sbjct: 1034 LKHMVQDKMHSRATGPRAILTRQPTEGRSRQGGLRLGEM--ERDCLIAY----------- 1080

Query: 860  RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
               G  ++ +E + +SS   E   V  NC  +GY
Sbjct: 1081 ---GASQLLLERLMISSDAHE-VDVCQNCGMMGY 1110


>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
           [Encephalitozoon cuniculi]
          Length = 1141

 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 237/922 (25%), Positives = 361/922 (39%), Gaps = 162/922 (17%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVP-----IMLKSKRCHLRNLTP 184
           +P EAR     Y+ P  + V      + G     +  RVP     +ML+S  C L  L  
Sbjct: 91  FPNEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGD 150

Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN----RRNHPI---------AIKRN 227
             LI+ GE P + GGYFIV G EK++    R+  N     ++  P          ++   
Sbjct: 151 KDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEK 210

Query: 228 AWKNRGLLFSDL-------GVYIRSVKRDES--ATNNVLHFVTNGSARFMFSHRKSMCLL 278
           + +N   L   L        V +  VK+D         L F+++        +     + 
Sbjct: 211 SSRNPSTLSMKLCRSPGVIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYEDDEEMF 270

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY--- 335
            +++   EEG   Q D  V    I K            + +   +L   +LPH+      
Sbjct: 271 ELLKESIEEGTVVQ-DQNVALDYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFC 329

Query: 336 -WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGTSA 390
              K   + ++  +L  V  G    D  D    + +   G    SL+  L KK    T+ 
Sbjct: 330 ETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTR 389

Query: 391 VL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
            +       +E +I    +AS I       LATGN     +    +   +G   +    N
Sbjct: 390 HMQKCIENGREFNIALGLKASIITQGFRYALATGNWG---DQAKAMQTRAGVAQVLNRYN 446

Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
            +  +SH R V+     +E + + PRQL    WG +CP  TP+G  CGL+ +L+    IS
Sbjct: 447 FVSTLSHLRRVNT-PIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYIS 505

Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
               S  L +    L   G+  L  +  S  + A  + ++G  VG   D +   L+  L+
Sbjct: 506 VGSSSGPLIEF---LEECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVG--LIKSLK 560

Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM--------------- 608
           +L+   E + K + IV   R ++       + + +  GR  RP++               
Sbjct: 561 LLRRSLE-MDKEVSIVRDIREKE-------IRVQSDAGRPCRPLLVVKDNKLVITAEDIR 612

Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT--------------------THRELSKT 648
            L  G I+W       F++     +E    I                     TH E+   
Sbjct: 613 KLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPA 672

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT-------P 701
             L   A+ IP PD NQSPRN YQ  MGKQ MG    N+       L R+ T       P
Sbjct: 673 LILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNF-------LLRMDTLSNILFYP 725

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P       + L     P G NA+VA+  Y+GY+ ED++I+N+S+ +RG     +F+S 
Sbjct: 726 QKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRG-----LFRSF 780

Query: 762 FIELESGYNYYGTETMYS-GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
           F        Y   E+M   GV+    +      V+  + L +                  
Sbjct: 781 FYR-----TYTDQESMSRPGVNEEFCKPS-RGAVLRMKNLNY------------------ 816

Query: 821 KALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
               +KL  DGL+  G ++   D       P+    + ++   V         M     R
Sbjct: 817 ----NKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAM----RR 868

Query: 874 MSSGFTEGGSVTPNCAY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
             +G  +   VT    Y    +  R  R P +GDKFASR  QKG   +    ED+PFT  
Sbjct: 869 TETGIVDTVIVTNKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSE 928

Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
           G+VPDI+ NPH  PSRMTIG L
Sbjct: 929 GIVPDIIINPHAIPSRMTIGHL 950



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 30/44 (68%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+   G E MY+G+ G  ++AQ+FFG  +YQRL+HMV DK   +
Sbjct: 987  GFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHAR 1030


>gi|296243132|ref|YP_003650619.1| DNA-directed RNA polymerase subunit B' [Thermosphaera aggregans DSM
           11486]
 gi|296095716|gb|ADG91667.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA
           polymerase, subunit B' [Thermosphaera aggregans DSM
           11486]
          Length = 1163

 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 193/732 (26%), Positives = 325/732 (44%), Gaps = 136/732 (18%)

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL------DDYWDKFLCLSHMTCK 348
           S++  G+  +E+++  LR L+E           +LPH+      +    K + +  M  +
Sbjct: 295 SRIAIGRPREERIRRALRALDE----------NLLPHIGTDPSPETRIKKAVFIGQMISR 344

Query: 349 LFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKES-----------DI 397
           +  +  G  + D +D    + +   G L   LL+      +  LKES           D+
Sbjct: 345 IIELHLGFREPDDKDHYRNKRLKLAGDLLSVLLRTALLAFTRDLKESAEKYLAKNRKLDL 404

Query: 398 YAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV--- 454
               + S I   + + +ATGN   GK    QL+         +  N +  +SH R V   
Sbjct: 405 KMVVKPSVITDRILHAMATGNWPGGKTGVSQLL---------DRTNMLSTLSHLRRVVSP 455

Query: 455 -HRGS-YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
             RG  +F      E R+L    WG +CP  TP+G   GL+ +L     +S  +P    +
Sbjct: 456 LSRGQPHF------EARELHGTQWGRMCPFETPEGANIGLVKNLALMVNVSVGVPE---S 506

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLD--------------------------GRI 546
           +I  +L    + PL  +      + +  +LD                          GR+
Sbjct: 507 EIEPILYKHQVKPLITITDRATGKTVKGILDEVKEAVRKYGGELPSEYEGWSKVYLNGRL 566

Query: 547 VGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           +GY  +     LV +LR ++  G K+   + I ++K           +Y+ T PGR+ RP
Sbjct: 567 IGYHPN--GEELVKELRKMRRQG-KLSPEVNIAHIK-----TEYLDEVYVNTDPGRIRRP 618

Query: 607 VMNLAAGNIEWIGT-----------FEQVFMDICITM------KEAYPGIT--------T 641
           ++ +  G I+   T           FE +     I        + AY  ++        T
Sbjct: 619 LLVVEKGEIKLTRTHLEKLRKGEISFEDLVHKGIIEYLDPDEEENAYIALSIDNITSEHT 678

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+     L   A++IP P+ NQSPRNMYQ  M KQ++G    N++ +   + + L  P
Sbjct: 679 HAEIWIPAILGITASIIPYPEHNQSPRNMYQAAMAKQSLGLYSANFQKRMDTRGHFLHYP 738

Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
             P  +    + +  +  P G N +VAV+++TGY++EDA+I+NKSS +RG A    F+ +
Sbjct: 739 QKPLVQTRSMEVIGYNERPAGQNMVVAVLTFTGYNIEDALIMNKSSADRGLARSTFFR-L 797

Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH--MVSDKWQTKDYFGRDPA 819
           +  +E  Y Y G +     +  + ++   + G+  Y++L    +V+ + Q          
Sbjct: 798 YSTVE--YKYMGGQQDEIVIPPTNIRG--YRGLRAYEKLEEDGIVAPETQVA-------G 846

Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFT 879
              L  K+ P    ++GA+    + M       ++  V  R+  +E+  V+ V +++   
Sbjct: 847 GDVLVGKISPPR--FLGAQ----EYMLGAGLTKQDTSVVMRH--EEKGIVDTVLITTD-N 897

Query: 880 EGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNP 939
           EG  +      +  R  R P +GDKFASR GQKG+  +  P  D+PFT+ G+VPD+V NP
Sbjct: 898 EGNKLVK----VRVRDLRIPELGDKFASRHGQKGVLGLLVPQYDMPFTEDGVVPDLVINP 953

Query: 940 HGFPSRMTIGFL 951
           H FPSRMT+G L
Sbjct: 954 HAFPSRMTVGQL 965



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPK------VPAGPVGIH 125
           H+ S+D  + E L   +++   I      + +K+ IV   I EPK      +P       
Sbjct: 27  HLDSYDRFIRELLPEMLKEFKEIPIT---EDVKITIVDYRIEEPKWITLEGIP------- 76

Query: 126 FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
             +  P E R     Y+ P  V + +  +         ++  +P+MLKS    L  +TP 
Sbjct: 77  -ERKTPMECRLRNLTYAAPVMVKIKYVDESGRSKEQELKLMDLPVMLKSSIDPLSKMTPE 135

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
           +L   GE P + GGYFI+ G EK++
Sbjct: 136 ELTSIGEDPKDPGGYFIINGSEKVL 160



 Score = 47.8 bits (112), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 773  GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G E MY G  G M+ + +F G+V+YQ+L HMVSDK   +
Sbjct: 1007 GEEVMYDGRTGEMISSPVFIGIVYYQKLHHMVSDKVHAR 1045


>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
 gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
          Length = 1261

 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 237/924 (25%), Positives = 372/924 (40%), Gaps = 187/924 (20%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            VG++PIM+KSK CHL +     L    E P + GGYF++ G EK+   LI   R+    +
Sbjct: 188  VGKLPIMVKSKICHLSSEHDDNLFLVNECPYDQGGYFVINGSEKV---LIAQERSAANIV 244

Query: 225  K----------------RNAWKNRGLLFSDLGVYIRSVKRDESA-------TNNVLHFVT 261
            +                R+A +    L S +   ++   + +SA        +  L FV 
Sbjct: 245  QVFKKAQPSPYTYTAEIRSALEKGSRLISSM--MLKLYGKGDSARGGFGQTIHTTLPFVK 302

Query: 262  NG-------------SARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
                           S   + +H    R    +L M++   EE    Q D +V    I K
Sbjct: 303  ADLPVAIVFRALGVVSDEDILNHICYDRTDSQMLEMLRPCIEEAFCVQ-DREVALDFIGK 361

Query: 305  E--KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQ 358
               + Q  L     V +   +L    LPH+         K   L +M  KL     G  +
Sbjct: 362  RGNRDQAGLGREKRVRVAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRE 421

Query: 359  LDSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES-------DIYAAFRASSIE 407
             D  D    + +   G L  +L    +++  +  S  LK         ++    +  ++ 
Sbjct: 422  PDDRDHFGKKRLDLAGPLLAKLFRGIVRRMNTELSNYLKRCVEGNRHFNLAVGIKPGTLS 481

Query: 408  SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRS 465
            + +   LATGN    K +      AS    +++ +NR  + S    + R +    ++ + 
Sbjct: 482  NGLKYSLATGNWGDQKKA------ASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKL 535

Query: 466  SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML- 524
            ++PRQL    WG +CP  TP+G  CGL+ +L+  C +S   PS+ L +    +++ GM  
Sbjct: 536  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEF---MINRGMEV 592

Query: 525  -----PL-----TPV--------IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
                 PL     T +        + S P+  +  +LD R   Y+  Q   SLV  +R  +
Sbjct: 593  VEEYEPLRYPHATKIFVNGVWCGVHSDPKHLVSQVLDTRRKSYL--QYEVSLVRDIRDRE 650

Query: 567  I-VGEKIPKSLEIVYLKRPEKG--MGLYPGLYLFTGP--GRMLR--------PVMNLA-- 611
              V     + +  V+  + E     G+  G  + T     ++ +        P M +   
Sbjct: 651  FKVFSDAGRVMRPVFTVQQEDDHESGIAKGALVLTKDLVNKLAKEQAEPPEDPSMKIGWE 710

Query: 612  ----AGNIEWIGTFEQVFMDICIT---------MKEAY---------------------P 637
                AG IE++   E+    IC+T          K  Y                      
Sbjct: 711  GLIRAGTIEYLDAEEEETAMICMTPEDLDLYRMQKAGYVVDDDNTDDPNRRLKTKTNPTT 770

Query: 638  GITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
             + TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +       
Sbjct: 771  HMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANI 830

Query: 698  LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
            L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RG      
Sbjct: 831  LYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 890

Query: 758  FKSMF-IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
            F+S    E + G NY  TE        S +            R++H              
Sbjct: 891  FRSYSDQEKKVGLNY--TEVFEKPFQQSTL------------RMKH-------------- 922

Query: 817  DPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK--ESENRYVTCRYS--GKEEMCVEVV 872
                    DKL  DG+V  G +++  D +       + EN+ +  R +   + ++   + 
Sbjct: 923  -----GTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTTVHQRRDISTPLR 977

Query: 873  RMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
               +G  +   VT N   + Y     R  + P +GDKFASR GQKG   V +  ED+PF+
Sbjct: 978  STENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFS 1037

Query: 928  DSGLVPDIVFNPHGFPSRMTIGFL 951
              G+ PDI+ NPH  PSRMTI  L
Sbjct: 1038 REGVTPDIIINPHAIPSRMTIAHL 1061



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1098 GYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHAR 1141


>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium anisopliae
            ARSEF 23]
          Length = 1262

 Score =  210 bits (535), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 230/924 (24%), Positives = 370/924 (40%), Gaps = 187/924 (20%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            VG++PIM+KSK CHL       L    E P + GGYF++ G EK+   LI   R+    +
Sbjct: 189  VGKLPIMVKSKICHLSREQEDSLFMVNECPYDQGGYFVINGSEKV---LIAQERSAANIV 245

Query: 225  K----------------RNAWKNRGLLFSDLGVYIRSVKRDES------ATNNVLHFVTN 262
            +                R+A +    L S L + +   K D +        +  L FV +
Sbjct: 246  QVFKKAQPSPYTYTAEIRSALEKGSRLISSLSLKLYG-KGDSARGGFGQTIHTTLPFVKS 304

Query: 263  G-------------SARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                          S   + +H    RK   +L M++   EE    Q D +V    I K 
Sbjct: 305  DLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQ-DREVALDFIGKR 363

Query: 306  --KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQL 359
              + Q  L     V +   +L    LPH+         K   L +M  KL     G  + 
Sbjct: 364  GNRDQAGLGRDKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREP 423

Query: 360  DSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES-------DIYAAFRASSIES 408
            D  D    + +   G L  +L    +++  +  S  L+         ++    +  ++ +
Sbjct: 424  DDRDHFGKKRLDLAGPLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTLSN 483

Query: 409  AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSS 466
             +   LATGN    K +    M ++  V  ++ +NR  + S    + R +    ++ + +
Sbjct: 484  GLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFASTLSHLRRTNTPIGRDGKLA 537

Query: 467  EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML-- 524
            +PRQL    WG +CP  TP+G  CGL+ +L+  C +S   P++ L +    +++ GM   
Sbjct: 538  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIEF---MINRGMEVV 594

Query: 525  ----PL-----TPV--------IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR---- 563
                PL     T +        +   P+  +  +LD R   Y+  Q   SLV ++R    
Sbjct: 595  EEYEPLRYPHATKIFVNGVWVGVHQDPKHLVSQVLDTRRKSYL--QYEVSLVREIRDQEF 652

Query: 564  -MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT----------------GPGRMLRP 606
             +    G  +     +     PE   G+  G  + T                 P   +  
Sbjct: 653  KIFSDAGRVMRPVFTVQQEDDPE--TGIEKGHLVLTKELVNKLAKEQAEPPEDPSEKIGW 710

Query: 607  VMNLAAGNIEWIGTFEQVFMDICITMKE------AYPGIT-------------------- 640
               + AG +E++   E+    IC+T ++         G+                     
Sbjct: 711  EGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVALDDDIGDDLNKRLKTKTNPT 770

Query: 641  ----THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
                TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +      
Sbjct: 771  THMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMAN 830

Query: 697  RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
             L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RG     
Sbjct: 831  ILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRG----- 885

Query: 757  IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
            +F+S+F      +  Y  +    G++ +    ++F    H   LR               
Sbjct: 886  LFRSLF------FRSYSDQEKKVGLNYT----EVFEKPFHQSTLR--------------- 920

Query: 817  DPANKALEDKLGPDGLVYVGAKLNERDPMYSYW----KESENRYVTCRYSGKEEMCVEVV 872
                    DKL  DG+V  G +++  D +        +ES++         + ++   + 
Sbjct: 921  --MKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQESQDLGTRTSVHQRRDISTPLR 978

Query: 873  RMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
               +G  +   +T N   + Y     R  + P +GDKFASR GQKG   V +  ED+PFT
Sbjct: 979  STENGIVDSVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFT 1038

Query: 928  DSGLVPDIVFNPHGFPSRMTIGFL 951
              G+ PDI+ NPH  PSRMTI  L
Sbjct: 1039 REGVTPDIIINPHAIPSRMTIAHL 1062



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1099 GYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHAR 1142


>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
          Length = 1261

 Score =  210 bits (535), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 247/1008 (24%), Positives = 400/1008 (39%), Gaps = 221/1008 (21%)

Query: 99   YGKTLKLNIVK--AAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW--- 153
            Y   L +NI K  +A  E +VP   +          +A+Q     +G     + W     
Sbjct: 120  YASPLYINITKKVSAAIEREVPLHEMD---------DAQQAEYAKTGENPTKLIWEQEES 170

Query: 154  --DGKAGGTFTKE----VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
              D +AG +   +    VG++PIM+KSK CHL   T   L    E P + GGYF++ G E
Sbjct: 171  PEDDEAGKSEDWKNMVFVGKLPIMVKSKICHLSRETDESLFMVNECPYDQGGYFVINGSE 230

Query: 208  KLVRLLINNRRNHPIAIK----------------RNAWKNRGLLFSDLGVYIRSVKRDES 251
            K+   LI   R+    ++                R+A +    L S L + +   K D +
Sbjct: 231  KV---LIAQERSAANIVQVFKKAQPSPFTYTAEIRSALEKGSRLISSLQLKLYG-KGDSA 286

Query: 252  ------ATNNVLHFVTNG-------------SARFMFSH----RKSMCLLGMMQSLHEEG 288
                    +  L FV +              S   + +H    RK   +L M++   EE 
Sbjct: 287  RGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEA 346

Query: 289  IHTQHDSKVFFGQIFKE--KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCL 342
               Q D +V    I K   + Q  L     V +   +L    LPH+         K   L
Sbjct: 347  FCVQ-DREVALDFIGKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFL 405

Query: 343  SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES--- 395
             +M  KL     G  + D  D    + +   G L  +L    +++  +  S  L+     
Sbjct: 406  GYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGIVRRMNNELSNYLRRCVEG 465

Query: 396  ----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHF 451
                ++    + +++ + +   LATGN    K +    M ++  V  ++ +NR  + S  
Sbjct: 466  NRHFNLAVGIKPATLSNGLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFASTL 519

Query: 452  RAVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
              + R +    ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+  C +S   PS+
Sbjct: 520  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSE 579

Query: 510  VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
             L +    +++ GM  +          A  + ++G  VG   D       PK  + +++ 
Sbjct: 580  PLIEF---MINRGMEVVEEYEPLRYPHATKIFVNGTWVGVHQD-------PKHLVSQVLD 629

Query: 570  EKIPKSLEI-VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------------- 609
             +    L+  V L R  +         +F+  GR++RPV                     
Sbjct: 630  TRRKSYLQYEVSLVREIRDQ----EFKIFSDAGRVMRPVFTVQQEDDPETGIEKGHLVLS 685

Query: 610  ---------------------------LAAGNIEWIGTFEQVFMDICITMKE------AY 636
                                       + AG +E++   E+    IC+T ++        
Sbjct: 686  KELVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQK 745

Query: 637  PGI--------------------TTHR----ELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
             G+                    TTH     E+  +  L   A++IP PD NQSPRN YQ
Sbjct: 746  AGVALDDDIGDDLNRRLKTRTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 805

Query: 673  CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
              MGKQ MG    N+  +       L  P  P       + L     P G NAIVA+  Y
Sbjct: 806  SAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 865

Query: 733  TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFF 792
            +GY+ ED++I+N+SS +RG     +F+S+F      +  Y  +    G++ +    ++F 
Sbjct: 866  SGYNQEDSVIMNQSSIDRG-----LFRSLF------FRSYSDQEKKVGLNYT----EVFE 910

Query: 793  GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK-- 850
               H   LR                       DKL  DG+V  G +++  D +       
Sbjct: 911  KPFHQSTLR-----------------MKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPI 953

Query: 851  ESENRYVTCRYS--GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGD 903
            + EN+ +  R +   + ++   +    +G  +   +T N   + Y     R  + P +GD
Sbjct: 954  DQENQDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKVPQIGD 1013

Query: 904  KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            KFASR GQKG   V +  ED+PFT  G+ PDI+ NPH  PSRMTI  L
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHL 1061



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1098 GYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHAR 1141


>gi|356520824|ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Glycine max]
          Length = 1152

 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 249/1006 (24%), Positives = 403/1006 (40%), Gaps = 177/1006 (17%)

Query: 36  LNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLG--APHIASFDFMLDEGL-------DL 86
            +Q  L+AP +K+  DK F   P    EFL   G    H+ SF++ +   +       DL
Sbjct: 31  FDQRVLTAP-IKSAVDK-FQLLP----EFLKVRGLVKQHLDSFNYFVRTDIKKIVRANDL 84

Query: 87  AVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFN 146
            V    P    IY + L + I K +I   +V             P   R +   Y+ P  
Sbjct: 85  IVASRYP---HIYLRFLNVGIGKPSIMIDEVT--------EDLTPQTCRLSDLTYAAPIC 133

Query: 147 VTVAWSWDGKAGGTFTK----EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFI 202
             V ++          +    E+GR+PIML+S  C L     A+L + GE P + GGYF+
Sbjct: 134 ADVEYTLGSHDKPDIKRKLKVEIGRMPIMLRSCCCVLHGRDEAELAKLGECPLDPGGYFV 193

Query: 203 VGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTN 262
           + G EK+            I I+    KNR ++ +D    I +     +        V  
Sbjct: 194 IKGTEKV------------ILIQEQLSKNRIIIDTDKKGNITASVTSSTEKIKTKTVVVM 241

Query: 263 GSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG--------------QIFKEKL- 307
              +      K    + +M  +   G+ +  +     G              +  K K+ 
Sbjct: 242 EKEKLWLQLNKFPKKVPLMVVMKAMGMESDQEVTQMVGRDPRYSFLLLPSIEECTKCKVY 301

Query: 308 --QYDLRHLNEVE------ICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQL 359
             +  L +L+++E      + D  L N  +   D++  K + ++ M  ++   +     +
Sbjct: 302 TREQALEYLDKLEGAAFSALRDVFLANVPVDQ-DNFRPKCIYVAVMMRRIMDAILNKDAM 360

Query: 360 DSEDSIMLQEIMTGG--------SLYLQLLKKEKSGTSAVLKESDIYAAF-------RAS 404
           D +D +  + +   G         L+  +  + K+ T  +L++ D    F       R  
Sbjct: 361 DDKDYVGNKRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTR 420

Query: 405 SIES-AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEM 463
           SI +  +   L+TGN    +      M+  G   + + ++ +  + H   V     F++ 
Sbjct: 421 SIITLGLERTLSTGNFEIKRFR----MERKGMTQVLQRLSFIGALGHMTRV--SPQFEKS 474

Query: 464 RS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLG 522
           R  S PR L+   WG +CP  TP+G  CGL+ +L     ++     K L  +   L    
Sbjct: 475 RKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLCESLGVED 534

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA-TSLVPKLRMLKIVGEKIPKSLEIVYL 581
           M  L+      P+ + +V+ +G I+G     +   + + KLR    +GE +      VY+
Sbjct: 535 MKDLSAEELHTPD-SFLVIFNGLILGKHRRPLHFATAIRKLRRAGKIGEFVS-----VYV 588

Query: 582 KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-----------IEWIGTFEQVFMDICI 630
              +        +YL +  GR+ RP++    G            ++ + TF+    D  +
Sbjct: 589 NEKQHC------VYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVRTFDDFLRDGLL 642

Query: 631 ----------TMKEAYPGI----TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
                      +   Y G     TTH E+     L  +A LIP P  NQSPRN YQC MG
Sbjct: 643 EYLDVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG 702

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ MG    N   +    LY L  P  P       + +  D    G NA VAV+SY+GYD
Sbjct: 703 KQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYD 762

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
           +EDA+++NK+S                 L+ G+        Y+ +               
Sbjct: 763 IEDAIVMNKAS-----------------LDRGFGRCIVMKKYNAI--------------- 790

Query: 797 YQRLRHMVSDKW----QTKDYFGR-----DPANKALEDKLGP-DGLVYVGAKLNERDPM- 845
            Q+  +  SD+     +T D  GR     D    A  + L P D  +   + ++ R P  
Sbjct: 791 IQKHSNDTSDRILRPNRTADTAGRMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKT 850

Query: 846 --YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGD 903
              +   +S  R     + G     V+ V + S           C     R  R P +GD
Sbjct: 851 GSAANLPDSAYRSNAQSFKGNGGEVVDRVVLCSDKDNN-----MCIKFLIRHTRRPELGD 905

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           KF+SR GQKG+C    P ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 906 KFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNPHGFPSRMTVG 951



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            +  G+NY G + +YSG+ G  +QA IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 992  VSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 1051

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    +G + VG    ERD + +Y
Sbjct: 1052 EGRARNGGLRVGEM--ERDCLIAY 1073


>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
          Length = 1261

 Score =  210 bits (534), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 232/931 (24%), Positives = 372/931 (39%), Gaps = 201/931 (21%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            VG++PIM+KSK CHL   T   L    E P + GGYF++ G EK+   LI   R+    +
Sbjct: 188  VGKLPIMVKSKICHLSRETDESLFMVNECPYDQGGYFVINGSEKV---LIAQERSAANIV 244

Query: 225  K----------------RNAWKNRGLLFSDLGVYIRSVKRDES------ATNNVLHFVTN 262
            +                R+A +    L S L + +   K D +        +  L FV +
Sbjct: 245  QVFKKAQPSPYTYTAEIRSALEKGSRLISSLQLKLYG-KGDSARGGFGQTIHTTLPFVKS 303

Query: 263  G-------------SARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                          S   + +H    RK   +L M++   EE    Q D +V    I K 
Sbjct: 304  DLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQ-DREVALDFIGKR 362

Query: 306  --KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQL 359
              + Q  L     V +   +L    LPH+         K   L +M  KL     G  + 
Sbjct: 363  GNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREP 422

Query: 360  DSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES-------DIYAAFRASSIES 408
            D  D    + +   G L  +L    +++  +  S  L+         ++    +  ++ +
Sbjct: 423  DDRDHFGKKRLDLAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKPGTLSN 482

Query: 409  AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSS 466
             +   LATGN    K +    M ++  V  ++ +NR  + S    + R +    ++ + +
Sbjct: 483  GLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFASTLSHLRRTNTPIGRDGKLA 536

Query: 467  EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
            +PRQL    WG +CP  TP+G  CGL+ +L+  C +S   PS+ L +    +++ GM  +
Sbjct: 537  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEF---MINRGMEVV 593

Query: 527  TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEI-VYLKRPE 585
                      A  + ++G  VG   D       PK  + +++  +    L+  V L R  
Sbjct: 594  EEYEPLRYPHATKIFVNGTWVGVHQD-------PKHLVSQVLDTRRKSYLQYEVSLVREI 646

Query: 586  KGMGLYPGLYLFTGPGRMLRPVMN------------------------------------ 609
            +         +F+  GR++RPV                                      
Sbjct: 647  RDQ----EFKIFSDAGRVMRPVFTVQQEDDPETGIEKGHLVLSKDLVNKLAKEQAEPPDD 702

Query: 610  ----------LAAGNIEWIGTFEQVFMDICITMKE------AYPGI-------------- 639
                      + AG +E++   E+    IC+T ++         G+              
Sbjct: 703  PSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGVALDDDNGDDLNRRL 762

Query: 640  ------TTHR----ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
                  TTH     E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  
Sbjct: 763  KTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSR 822

Query: 690  QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
            +       L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N+SS +
Sbjct: 823  RMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSID 882

Query: 750  RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
            RG     +F+S+F      +  Y  +    G++ +    ++F    H   LR        
Sbjct: 883  RG-----LFRSLF------FRSYSDQEKKVGLNYT----EVFEKPFHQSTLR-------- 919

Query: 810  TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK--ESENRYVTCRYS--GKE 865
                           DKL  DG+V  G +++  D +       + EN+ +  R S   + 
Sbjct: 920  ---------MKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLGTRTSVHQRR 970

Query: 866  EMCVEVVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWP 920
            ++   +    +G  +   +T N   + Y     R  + P +GDKFASR GQKG   V + 
Sbjct: 971  DISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYR 1030

Query: 921  AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             ED+PFT  G+ PDI+ NPH  PSRMTI  L
Sbjct: 1031 QEDMPFTREGVTPDIIINPHAIPSRMTIAHL 1061



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1098 GYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHAR 1141


>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
            CQMa 102]
          Length = 1263

 Score =  209 bits (533), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 230/924 (24%), Positives = 370/924 (40%), Gaps = 187/924 (20%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            VG++PIM+KSK CHL       L    E P + GGYF++ G EK+   LI   R+    +
Sbjct: 190  VGKLPIMVKSKICHLSREQEDSLFMVNECPYDQGGYFVINGSEKV---LIAQERSAANIV 246

Query: 225  K----------------RNAWKNRGLLFSDLGVYIRSVKRDES------ATNNVLHFVTN 262
            +                R+A +    L S L + +   K D +        +  L FV +
Sbjct: 247  QVFKKAQPSPYTYTAEIRSALEKGSRLISSLTLKLYG-KGDSARGGFGQTIHTTLPFVKS 305

Query: 263  G-------------SARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE 305
                          S   + +H    RK   +L M++   EE    Q D +V    I K 
Sbjct: 306  DLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQ-DREVALDFIGKR 364

Query: 306  --KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQL 359
              + Q  L     V +   +L    LPH+         K   L +M  KL     G  + 
Sbjct: 365  GNRDQAGLGRDKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREP 424

Query: 360  DSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES-------DIYAAFRASSIES 408
            D  D    + +   G L  +L    +++  +  S  L+         ++    +  ++ +
Sbjct: 425  DDRDHFGKKRLDLAGPLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTLSN 484

Query: 409  AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSS 466
             +   LATGN    K +    M ++  V  ++ +NR  + S    + R +    ++ + +
Sbjct: 485  GLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFASTLSHLRRTNTPIGRDGKLA 538

Query: 467  EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML-- 524
            +PRQL    WG +CP  TP+G  CGL+ +L+  C +S   P++ L +    +++ GM   
Sbjct: 539  KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPLIEF---MINRGMEVV 595

Query: 525  ----PL-----TPV--------IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR---- 563
                PL     T +        +   P+  +  +LD R   Y+  Q   SLV ++R    
Sbjct: 596  EEYEPLRYPHATKIFVNGVWVGVHQDPKHLVSQVLDTRRKSYL--QYEVSLVREIRDQEF 653

Query: 564  -MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT----------------GPGRMLRP 606
             +    G  +     +     PE   G+  G  + T                 P   +  
Sbjct: 654  KIFSDAGRVMRPVFTVQQEDDPE--TGIEKGHLVLTKDLVNKLAKEQAEPPEDPSEKIGW 711

Query: 607  VMNLAAGNIEWIGTFEQVFMDICITMKE------AYPGIT-------------------- 640
               + AG +E++   E+    IC+T ++         G+                     
Sbjct: 712  EGLIRAGAVEYLDAEEEETAMICMTPEDLELYRLQKAGVALDDDIGDDLNKRLKTKTNPT 771

Query: 641  ----THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
                TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +      
Sbjct: 772  THMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMAN 831

Query: 697  RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
             L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RG     
Sbjct: 832  ILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRG----- 886

Query: 757  IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
            +F+S+F      +  Y  +    G++ +    ++F    H   LR               
Sbjct: 887  LFRSLF------FRSYSDQEKKVGLNYT----EVFEKPFHQSTLR--------------- 921

Query: 817  DPANKALEDKLGPDGLVYVGAKLNERDPMYSYW----KESENRYVTCRYSGKEEMCVEVV 872
                    DKL  DG+V  G +++  D +        +ES++         + ++   + 
Sbjct: 922  --MKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQESQDLGTRTSVHQRRDISTPLR 979

Query: 873  RMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
               +G  +   +T N   + Y     R  + P +GDKFASR GQKG   V +  ED+PFT
Sbjct: 980  STENGIVDSVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFT 1039

Query: 928  DSGLVPDIVFNPHGFPSRMTIGFL 951
              G+ PDI+ NPH  PSRMTI  L
Sbjct: 1040 REGVTPDIIINPHAIPSRMTIAHL 1063



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1100 GYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHAR 1143


>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit
           [Thalassiosira pseudonana CCMP1335]
 gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit
           [Thalassiosira pseudonana CCMP1335]
          Length = 1196

 Score =  209 bits (533), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 251/958 (26%), Positives = 386/958 (40%), Gaps = 207/958 (21%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSW-----DGKAGG--------TFTKE-----VGRVPIM 171
           +P EAR     Y+ P  V V  +      D   G           T+E     +G VPIM
Sbjct: 106 FPHEARLRNLTYAAPLYVDVTMNEYRVGNDVNVGDPAEDMGEPVSTEEARKEFLGYVPIM 165

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR----- 226
           L+S  C L +   AQL + GE   + GGYF++ G EK++        NH  A K+     
Sbjct: 166 LRSLFCVLSDKDDAQLADLGECIYDQGGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSK 225

Query: 227 ------------NAWKNRGLLFSDL----------GVYIRSV------------------ 246
                       N+ +    L+  +          G  IRS                   
Sbjct: 226 FSWVIETRSQVENSTRPTSTLYIQMYQKGGKGAIEGNQIRSTLPYIRTDIPVVIIFRALG 285

Query: 247 -KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE 305
              D     +V++ +T+G    +F             SL E  +  + +  + F  I + 
Sbjct: 286 YVADRDIIEHVVYDLTDGEMMDLFR-----------PSLEEAFVIQKQEVALDF--IGRR 332

Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDS 361
               D+   + +     +L   +LPH+  +++ +  K   L +   KL     G    D 
Sbjct: 333 GSARDVTKDDRIRYAAGILQKEVLPHVGTEEHCETKKGFFLGYAVHKLLMCKLGRADEDD 392

Query: 362 EDSIMLQEIMTGGSL--------YLQLLKKEKSGTSAVLKES---DIYAAFRASSIESAM 410
            D    + +   G L        + +L K  +      L E    +I AA +++ I   +
Sbjct: 393 RDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHISDGL 452

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEP 468
              LATGN     N++      +G   +++ +NR+ Y S    + R +    +  + ++P
Sbjct: 453 KYSLATGNWGDKGNTS-----KAG---VSQVLNRLTYASSLSHLRRSNTPLARTGKQAKP 504

Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP--SVLVSLGMLPL 526
           RQL    WG +CP  TP+G   GL+     N  +  YI +   +Q+P    L       L
Sbjct: 505 RQLHNSHWGMVCPAETPEGQAVGLVK----NMALMAYITTGT-SQVPVMEFLEEFSTENL 559

Query: 527 TPVIQSIPEQ--ALMVMLDGRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLK 582
           T ++ S+  +     + ++G  VG   D  Q+  +     RM+ I  E     + IV   
Sbjct: 560 TDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRRMIDIDAE-----VSIVR-D 613

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMN-------------------------------LA 611
            PE  + +Y      T  GR+ RP+                                 L 
Sbjct: 614 IPESEVRIY------TDAGRICRPLFIVTDQELAIKKHHISQLQGVSPDQKKLTWTDLLM 667

Query: 612 AGNIEWIGTFEQ----VFM---DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCN 664
            G +E++ T E+    + M   D+ +T+ E Y    TH E+  +  L   A++IP PD N
Sbjct: 668 EGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTTYTHCEIHPSMILGICASIIPFPDHN 727

Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
           QSPRN YQ  MGKQ MG    N++ +     + L  P  P       + L     P G N
Sbjct: 728 QSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVN 787

Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGS 784
            +VA++ YTGY+ ED++I+N+S+ +RG     +F+S +      Y  Y  +   S V   
Sbjct: 788 VVVAIMIYTGYNQEDSLIMNQSAIDRG-----LFRSSY------YRCYNDQEKSSSVGSV 836

Query: 785 MMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD- 843
                 FF    +   + M     +T DY            KL  DGLV  G +++  D 
Sbjct: 837 GALNSEFFERPAFDNCKGM-----KTGDY-----------GKLDDDGLVSPGTRVSGDDV 880

Query: 844 ------PMYSYWKESENRYVT--CRYSGK--EEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
                 PM +    + +RY    C  S K  E   V+ V +S+   EG   T     +  
Sbjct: 881 LIGKTAPMDAI-ANTPSRYTKRDCSTSMKANENGIVDNVLISTT-KEGYRFTK----VRI 934

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           R  R P VGDKFASR GQKG   + +  ED+PFT  G+VPDI+ NPH  PSRMTI  L
Sbjct: 935 RNVRIPQVGDKFASRHGQKGTIGMTYRQEDMPFTCEGIVPDIIVNPHAIPSRMTIAQL 992



 Score = 46.6 bits (109), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY  +G E MY G  G  + A++F G   YQRL+H+V DK  ++
Sbjct: 1029 GYQRHGNEAMYQGHTGRPLNARVFIGPTFYQRLKHLVDDKVHSR 1072


>gi|170579233|ref|XP_001894738.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Brugia malayi]
 gi|158598542|gb|EDP36414.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
           putative [Brugia malayi]
          Length = 1104

 Score =  209 bits (533), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 245/983 (24%), Positives = 404/983 (41%), Gaps = 203/983 (20%)

Query: 72  HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
           HIAS+D+ +   +       D    D  P     Y K L +++         +P+   G 
Sbjct: 32  HIASYDYFVSTEIKKILRANDKITSDANP---SFYLKYLDIHV--------GMPSSEEGF 80

Query: 125 H--FNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           +   +K  P E R     YS P +V + ++   +        +G++P+ML+S +C L+N+
Sbjct: 81  NQINDKISPHECRLRDMTYSAPISVDIEYTRGSQRVLRNGLIIGKMPVMLRSSKCVLKNM 140

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
             ++L    E P + GGYFI+ G EK+V L+      + I I RN+ K       +L   
Sbjct: 141 NESELARVQECPYDPGGYFIIRGSEKVV-LIQEQLSKNRIMIGRNSKK-------ELQCE 192

Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG-- 300
           I S  ++  +      ++ +   R+   H +    + +       G  + HD     G  
Sbjct: 193 ILSSTQERKSKT----YIASKKQRYYVRHNQLSDDVPIAIIFKAMGFESDHDIVSAVGLE 248

Query: 301 -----------------QIFKEK--LQY-----DLRHL-----------NEVEICDYMLT 325
                            QI  ++  LQY      +R              E E  D+ L+
Sbjct: 249 EKFVAAMAPSIEECASHQIVTQEGALQYIASKVKIRKFGPATSGTSTLPREHEAIDF-LS 307

Query: 326 NCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----Y 377
           N ++ H+     +   K + L  M  +L     G  + D  D    + +   GSL    +
Sbjct: 308 NLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLELAGSLLALLF 367

Query: 378 LQLLKKEKSGTSAVLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQ 428
             + K+  S    +   S         DI    R   I +A+ + LATGN +  +     
Sbjct: 368 EDVFKRFNSELKRIADNSLGKTLAAPLDIVKHVRQDLITNALVDALATGNWTIKRFK--- 424

Query: 429 LMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPD 486
            M+  G   + + ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+
Sbjct: 425 -MERQG---VTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPE 480

Query: 487 GTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV-IQSIPEQAL-MVMLDG 544
           G  CGL+ +L     I+     K + ++   L + G+  +  +   +I   A  +V L+G
Sbjct: 481 GESCGLVKNLALLSHITTDSDEKPVIRL---LYNAGVEDVKSLHFSAIHNPAYHIVFLNG 537

Query: 545 RIVGYILD-QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
            IVG  +D Q   S +  +R   ++ E +  S                  +Y+ +  GR+
Sbjct: 538 VIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTN-----------AAQRSVYIASDGGRL 586

Query: 604 LRP---VMN-----------------------LAAGNIEWIGTFEQVFMDICITMKEAYP 637
            RP   V N                       +  G IE++   E     I +   +  P
Sbjct: 587 CRPYIIVKNSIPQVTQEHIEELKKGYRIFEDFVDDGLIEYLDVNEMNDASIAVYENQIKP 646

Query: 638 GITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
             TTH E+     L   A LIP P  NQSPRN YQC MGKQ MGT   N + +    +Y 
Sbjct: 647 -TTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQKRIDSLMYL 705

Query: 698 LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
           L  P  P  +    +  + +  P G NAI+AV+SY+GYD+EDA++LNK+S +RG+    +
Sbjct: 706 LVYPQRPLVKTKTIEFCNFEKLPAGQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLV 765

Query: 758 FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +K      ++    Y  +T +  + G  ++A     +      +H V D+          
Sbjct: 766 YK----HAKATARKYPNQT-FDRLMGPTIEAATRKPI-----YKHQVLDQ---------- 805

Query: 818 PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
                       +G+VYVGA +  +  M        N+++             VV M +G
Sbjct: 806 ------------EGIVYVGACIRSKQVMI-------NKHMP------------VVSMEAG 834

Query: 878 FT---EGGSVTPNCAYIGYR----IQRN--PTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
            T     G+       + Y+    + RN  P+  ++      +     VK   ED+PF D
Sbjct: 835 ATVSNNDGTNIGGSHEVEYKDVSVVYRNPVPSYAERVLLTYNEDDAHLVK---EDMPFND 891

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
            G+ PD++ NPHG+PSRMT+G L
Sbjct: 892 LGMCPDMIMNPHGYPSRMTVGKL 914



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G+NY G + + SG+ G  + A I+FG ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 951  GFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1010

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD + +Y
Sbjct: 1011 ARDGGLRLGEM--ERDCLIAY 1029


>gi|294890932|ref|XP_002773362.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239878463|gb|EER05178.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 365

 Score =  209 bits (533), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 135/355 (38%), Positives = 187/355 (52%), Gaps = 49/355 (13%)

Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------EKSGTSAVLKESDIYAA 400
           KL  +V+G +  D+ D++ +QE++  G L+  LLK+          G  A          
Sbjct: 9   KLMALVRGDIARDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKKSRQAQVGK 68

Query: 401 FRASSIESA----------------MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
            RA ++ SA                M +FLATGN+++   S L L Q +GF ++A+ +N 
Sbjct: 69  GRAPTVLSAELIRNTFMGVCDVTKRMESFLATGNITS--RSGLDLQQTTGFTVVADKLNA 126

Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
            RY+SHFRAVHRGS+FQEM+++  R+L  + WGF+CPVHTPDGTPCGLLNHL   CQ   
Sbjct: 127 YRYLSHFRAVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLAAPCQPVV 186

Query: 505 YI--PSKVLAQIPSVLVSLGMLPLTPVIQSIPE----QALMVMLDGRIVGYILDQIATSL 558
            I  P  V+  +   L SLG+  +     S       +   V LDGR++G +      ++
Sbjct: 187 RIASPEGVIPGLEEELASLGVQLVRSSKTSTANYGAGENAYVTLDGRVLGKVARSRLEAV 246

Query: 559 VPKLRMLKIVGE--KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIE 616
             +LR LKI  +   +P  LEIV  + P      + GL+LFTGP RM+RPV +LA GN E
Sbjct: 247 AEELRRLKIDKDCPGVPADLEIVACQTPAS----FEGLWLFTGPCRMVRPVRDLATGNEE 302

Query: 617 WIGTFEQVFMDICIT------------MKEAYPGITTHRELSKTDFLSNLANLIP 659
            +G  EQVF+ I  T            + E  P   TH ELS    LS +A L P
Sbjct: 303 LVGPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSVIAGLTP 357


>gi|408402778|ref|YP_006860761.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
           gargensis Ga9.2]
 gi|300521500|gb|ADK25961.1| RNA polymerase B [Candidatus Nitrososphaera gargensis]
 gi|408363374|gb|AFU57104.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
           gargensis Ga9.2]
          Length = 1116

 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 187/758 (24%), Positives = 327/758 (43%), Gaps = 102/758 (13%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  ++ GL   ++++  IE E      K+ + K  + +P++    +        P
Sbjct: 25  HLNSYNEFMERGLQSIIDEVGEIEIETAEYPYKIKLGKIKLQQPRIME--LDGSITHVAP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +  +   DGK   +    +G +P+M+KS  C L NL  ++LIE G
Sbjct: 83  MEARLRNLTYASPVMLECSVVEDGKILESRFIHIGDMPVMVKSNTCILHNLPESKLIEFG 142

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV----- 246
           E P + GGYFI+ G E+++  L +   N  I    +A +  G L     VY   V     
Sbjct: 143 EDPRDPGGYFIINGSERVIVGLEDLSYNKIIV---DAEEATGTLLYKAKVYSSIVGYRAK 199

Query: 247 -----KRDESATNNV------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE-------- 287
                + D S    +      +  +T   A  + S +     + + +++ +E        
Sbjct: 200 LELVMRPDGSIVTKIPGSPVDIPLITLIRALGLESDKDIADSVSLNETIQDELEPSFEKA 259

Query: 288 -GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCL 342
             ++T  D+ V+  +     +  +     +++  + +L   +LPH+    D+  +K L L
Sbjct: 260 GDVNTSRDAIVYISKRIAPGMLEEF----QIKRAETLLDWGLLPHIGKNPDNRHEKALFL 315

Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTS 389
                KL  +  G +  D +D    + I   G +   L +              E+SG  
Sbjct: 316 GEAASKLIELKLGWIDADDKDHYGNKVIKFAGQMLADLFRTAFRNLIRDMKYQLERSGQK 375

Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
             +  + + AA R   +   + N +ATGN   G+    QL+         +  N M  +S
Sbjct: 376 RGI--NAVAAAVRPGIVSDKLNNAIATGNWGRGRVGVTQLL---------DRTNYMSTIS 424

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R +      +   + E R L    +G ICP  TP+G+ CGL+ +L  +  IS  + S 
Sbjct: 425 HLRRIQ-SPLSRSQPNFEARDLHATHFGRICPAETPEGSNCGLVKNLALSAIISVNVQS- 482

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
             A++   L  LG+  +    + + E    V +DGR++GY+  +    L   LR ++  G
Sbjct: 483 --AEVTEKLYELGVQNVEDAREDLRESGTRVFVDGRLIGYV--EKGEHLSDTLRSMRRSG 538

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------- 614
           +  P     +Y  + E        LY+    GR+LRP++ L  G                
Sbjct: 539 KIHPHVGIYLYSSQNENAT---KRLYISCNAGRVLRPLVVLRDGKPLVTNEVIEKVSKKF 595

Query: 615 -----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
                      IE +   E+    + I  K+  P   TH E+  +  L   A++IP P+ 
Sbjct: 596 LSWNDLLYMGVIELVDANEEENCYVAIDPKKLEPK-HTHLEIFPSAILGVGASIIPYPEH 654

Query: 664 NQSPRNMYQCQMGKQTMG--TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           NQSPRN Y+  M KQ++G  TP +N       + + +  P +P       + L +++ P 
Sbjct: 655 NQSPRNTYESAMAKQSLGFSTPLMNA--STYVRQHFMLYPQTPVVSTKAINLLGLEDRPT 712

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           G NA+VAV+ + GY++EDA++ NKSS +RG      ++
Sbjct: 713 GQNAVVAVLPFEGYNIEDAVVFNKSSVDRGLGRTFFYR 750



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 43/59 (72%)

Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           I  R  R P +GDKFASR GQKG+  +    ED+P+T+ G+VPDI+ NPH FPSRMT+G
Sbjct: 861 IRVRDMRIPEIGDKFASRHGQKGVVGMLVNQEDVPYTEDGVVPDIMINPHAFPSRMTVG 919



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+ Y G ETMY G  G    A ++ GVV+YQ+L HMV+DK  ++
Sbjct: 958  GFKYTGKETMYDGRTGRKFPADVYIGVVYYQKLHHMVADKIHSR 1001


>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
            206040]
          Length = 1261

 Score =  209 bits (532), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 235/926 (25%), Positives = 370/926 (39%), Gaps = 191/926 (20%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            VG++PIM+KSK CHL       L    E P + GGYF++ G EK+   LI   R+    +
Sbjct: 188  VGKLPIMVKSKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKV---LIAQERSAANIV 244

Query: 225  K----------------RNAWKNRGLLFSDLGVYIRSVKRDESA-------TNNVLHFVT 261
            +                R+A +    L S +   ++   + +SA        +  L FV 
Sbjct: 245  QVFKKAQPSAYTYTAEIRSALEKGSRLISSM--MLKLYGKGDSARGGFGQTIHTTLPFVK 302

Query: 262  NG-------------SARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
            +              S   + +H    R    +L M++   EE    Q D +V    I K
Sbjct: 303  SDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQ-DREVALDFIGK 361

Query: 305  E--KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQ 358
               + Q  L     V +   +L    LPH+         K   L +M  KL     G  +
Sbjct: 362  RGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRRE 421

Query: 359  LDSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES-------DIYAAFRASSIE 407
             D  D    + +   G L  +L    +++  +  +  L+         ++    +  ++ 
Sbjct: 422  PDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLS 481

Query: 408  SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRS 465
            + +   LATGN    K +    M ++  V  ++ +NR  + S    + R +    ++ + 
Sbjct: 482  NGLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFASTLSHLRRTNTPIGRDGKL 535

Query: 466  SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML- 524
            ++PRQL    WG +CP  TP+G  CGL+ +L+  C +S   PS+ L +    +++ GM  
Sbjct: 536  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEF---MINRGMEV 592

Query: 525  -----PL-----TPV--------IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR--- 563
                 PL     T +        I   P+  +  +LD R   Y+  Q   SL+ ++R   
Sbjct: 593  VEEYEPLRYPHATKIFVNGVWVGIHQDPKHLVNQVLDTRRKSYL--QYEVSLIREIRDQE 650

Query: 564  --MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP--GRMLR--------PVMNLA 611
              +    G  +     +     PE G+    G  + T     R+ +        P M L 
Sbjct: 651  FKIFSDAGRVMRPVFTVQQEDDPETGIN--KGHLVLTKDLVNRLAKEQAEPPEDPSMKLG 708

Query: 612  ------AGNIEWIGTFEQVFMDICITMKE------AYPGITT------------------ 641
                  AG +E++   E+    IC+T ++         GI T                  
Sbjct: 709  WEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGIATDEDIGDDPNKRLKTKTNP 768

Query: 642  ------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
                  H E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +     
Sbjct: 769  TTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMA 828

Query: 696  YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
              L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RG    
Sbjct: 829  NILYYPQKPLGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 888

Query: 756  CIFKSMF-IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF 814
              F+S    E + G NY                 ++F    H   LR             
Sbjct: 889  LFFRSYSDQEKKVGLNY----------------TEVFEKPFHQNTLR------------- 919

Query: 815  GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK--ESENRYVTCRYS--GKEEMCVE 870
                      DKL  DG+V  G +++  D +       ++E + +  R +   + ++   
Sbjct: 920  ----MKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDAETQDLGTRTTMHQRRDISTP 975

Query: 871  VVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
            +    +G  +   VT N   + Y     R  + P +GDKFASR GQKG   V +  ED+P
Sbjct: 976  LRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMP 1035

Query: 926  FTDSGLVPDIVFNPHGFPSRMTIGFL 951
            FT  GL PDI+ NPH  PSRMTI  L
Sbjct: 1036 FTREGLTPDIIINPHAIPSRMTIAHL 1061



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1098 GYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHAR 1141


>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
          Length = 1261

 Score =  209 bits (532), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 247/1008 (24%), Positives = 398/1008 (39%), Gaps = 221/1008 (21%)

Query: 99   YGKTLKLNIVK--AAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW--- 153
            Y   L +NI K  +A  E +VP   +          +A+Q     +G     + W     
Sbjct: 120  YASPLYINITKKVSAAIEREVPLHEMD---------DAQQAEYAKTGENPTKLIWEQEES 170

Query: 154  --DGKAGGTFTKE----VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
              D  AG +   +    VG++PIM+KSK CHL   T   L    E P + GGYF++ G E
Sbjct: 171  PEDDDAGKSEDWKNMVFVGKLPIMVKSKICHLSRETDESLFMVNECPYDQGGYFVINGSE 230

Query: 208  KLVRLLINNRRNHPIAIK----------------RNAWKNRGLLFSDLGVYIRSVKRDES 251
            K+   LI   R+    ++                R+A +    L S L + +   K D +
Sbjct: 231  KV---LIAQERSAANIVQVFKKAQPSPFTYTAEIRSALEKGSRLISSLQLKLYG-KGDSA 286

Query: 252  ------ATNNVLHFVTNG-------------SARFMFSH----RKSMCLLGMMQSLHEEG 288
                    +  L FV +              S   + +H    RK   +L M++   EE 
Sbjct: 287  RGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDEDILNHICYDRKDSQMLEMLRPCIEEA 346

Query: 289  IHTQHDSKVFFGQIFKE--KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCL 342
               Q D +V    I K   + Q  L     V +   +L    LPH+         K   L
Sbjct: 347  FCVQ-DREVALDFIGKRGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFL 405

Query: 343  SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES--- 395
             +M  KL     G  + D  D    + +   G L  +L    +++  +  S  L+     
Sbjct: 406  GYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGIVRRMNNELSNYLRRCVEG 465

Query: 396  ----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHF 451
                ++    +  ++ + +   LATGN    K +    M ++  V  ++ +NR  + S  
Sbjct: 466  NRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFASTL 519

Query: 452  RAVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
              + R +    ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+  C +S   PS+
Sbjct: 520  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSE 579

Query: 510  VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
             L +    +++ GM  +          A  + ++G  VG   D       PK  + +++ 
Sbjct: 580  PLIEF---MINRGMEVVEEYEPLRYPHATKIFVNGTWVGVHQD-------PKHLVSQVLD 629

Query: 570  EKIPKSLEI-VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN------------------- 609
             +    L+  V L R  +         +F+  GR++RPV                     
Sbjct: 630  TRRKSYLQYEVSLVREIRDQ----EFKIFSDAGRVMRPVFTVQQEDDPETGIEKGHLVLS 685

Query: 610  ---------------------------LAAGNIEWIGTFEQVFMDICITMKE------AY 636
                                       + AG +E++   E+    IC+T ++        
Sbjct: 686  KELVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQK 745

Query: 637  PGI--------------------TTHR----ELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
             G+                    TTH     E+  +  L   A++IP PD NQSPRN YQ
Sbjct: 746  AGVALDDDIGDDLNRRLKTRTNPTTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQ 805

Query: 673  CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
              MGKQ MG    N+  +       L  P  P       + L     P G NAIVA+  Y
Sbjct: 806  SAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAIACY 865

Query: 733  TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFF 792
            +GY+ ED++I+N+SS +RG     +F+S+F      +  Y  +    G++ +    ++F 
Sbjct: 866  SGYNQEDSVIMNQSSIDRG-----LFRSLF------FRSYSDQEKKVGLNYT----EVFE 910

Query: 793  GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK-- 850
               H   LR                       DKL  DG+V  G +++  D +       
Sbjct: 911  KPFHQSTLR-----------------MKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPI 953

Query: 851  ESENRYVTCRYS--GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGD 903
            + EN+ +  R +   + ++   +    +G  +   +T N   + Y     R  + P +GD
Sbjct: 954  DQENQDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKVPQIGD 1013

Query: 904  KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            KFASR GQKG   V +  ED+PFT  G+ PDI+ NPH  PSRMTI  L
Sbjct: 1014 KFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHL 1061



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1098 GYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHAR 1141


>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
          Length = 1221

 Score =  209 bits (532), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 235/916 (25%), Positives = 368/916 (40%), Gaps = 182/916 (19%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV--------RLLINN 216
            +GRVPIML+SK C L +LT + L    E P + GGYFI+ G EK++         ++   
Sbjct: 161  IGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVF 220

Query: 217  RRNHP-----IAIKRNAWKNRGLLFSDLGVYIR----SVKRDESAT-------------N 254
            +++ P     IA  R+A +      S L V +     S  R   AT              
Sbjct: 221  KKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKATLPYIKQDIPIVIIF 280

Query: 255  NVLHFVTNGSARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKL 307
              L  + +G    +  H   +C       +L M++   EEG   Q D +     I +   
Sbjct: 281  RALGIIPDGE---ILEH---ICYDVNDWQMLEMLKPCVEEGFVIQ-DRETALDFIGRRGT 333

Query: 308  QYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTCKLFHVVQGMVQLDSED 363
               ++    ++    +L    LPH+         K   L +M  +L          D  D
Sbjct: 334  ALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRD 393

Query: 364  SIMLQEIMTGGSLYLQLLKKE-KSGTSAVL----------KESDIYAAFRASSIESAMTN 412
                + +   G L  QL K   +  T  +L          K+ ++  A +A++I + +  
Sbjct: 394  HFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKY 453

Query: 413  FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPR 469
             LATGN    K S       S    +++ +NR  Y   +SH R  +     ++ + ++PR
Sbjct: 454  ALATGNWGEQKKSM------SSRAGVSQVLNRYTYSSTLSHLRRTN-TPIGRDGKLAKPR 506

Query: 470  QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV 529
            QL    WG +CP  TP+G  CGL+ +L+    IS  + +  L  I + L   GM PL   
Sbjct: 507  QLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS--VGTDPLP-IITFLNEWGMEPLEDY 563

Query: 530  IQSIPEQALMVMLDG------RIVGYILDQIAT-----SLVPKLRMLKIVGEK------- 571
            I      A  V ++G      R    ++D I        + P++ +++ + EK       
Sbjct: 564  IPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREKELKIFTD 623

Query: 572  ---IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRML--------------RPVMN----- 609
               + + L IV  + PE G      L +  G  R L                 MN     
Sbjct: 624  AGRVYRPLFIVD-ENPETGR---KELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTS 679

Query: 610  -LAAGNIEWIGTFEQVFMDICITMKEAYPG------------------------ITTHRE 644
             L  G +E+I   E+  + I +  ++  P                         I TH E
Sbjct: 680  LLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTHCE 739

Query: 645  LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
            +  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P  P
Sbjct: 740  IHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKP 799

Query: 705  FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
                   + L     P G NAIVA+  Y+GY+ ED+MI+N+SS +RG      F+S +++
Sbjct: 800  LGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS-YMD 858

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
             E       TE+       + +            R++H                      
Sbjct: 859  QEKRIGMSITESFEKPHRTNTL------------RMKH-------------------GTY 887

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
            DKL  DGL+  G +++  D +         ++E       +  K +    +    +G  +
Sbjct: 888  DKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVD 947

Query: 881  GGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
               +T N   + +     R  + P +GDKFASR GQKG   + +  ED+PFT  G+VPD+
Sbjct: 948  QVLITTNQEGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDL 1007

Query: 936  VFNPHGFPSRMTIGFL 951
            + NPH  PSRMT+  L
Sbjct: 1008 IINPHAIPSRMTVAHL 1023



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQIFFG  +YQRLRHMV DK   +
Sbjct: 1058 EHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1103


>gi|294871589|ref|XP_002765980.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239866470|gb|EEQ98697.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 510

 Score =  209 bits (532), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 169/325 (52%), Gaps = 50/325 (15%)

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH ELS    LS +A L P  + NQSPRNMYQCQM KQTM  P LN  Y+   K+Y++  
Sbjct: 4   THIELSPISMLSVIAGLTPFSNHNQSPRNMYQCQMLKQTMAIPYLNHPYRTDNKVYKITY 63

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
           P  P  R       + D  P GTNAIVAVI+++G+DMEDA+I++K SY+RGF HG ++K+
Sbjct: 64  PQFPMVRTTVLSEANFDVKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKT 123

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             I                G  GS              RL    +D    K         
Sbjct: 124 KVINCPP-----------KGTVGS--------------RLAQFRADNHSVK-------GE 151

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM------ 874
           K ++D L  DG+ Y+G +++E DP+     +        +Y   E   VE V M      
Sbjct: 152 KVVKD-LDYDGIPYIGQQVHEGDPICRVLNKGTGEAKLEKYKEGEVAWVEQVNMIGGGGW 210

Query: 875 --------SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
                   + G  + GS   +   I  R+ RNP VGDKF+SR GQKG+ ++ WP  D+PF
Sbjct: 211 WGGGAGARNPGGIKDGSERMS---IKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMPF 267

Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
           + SG+ PDI+FNPHG PSRMTIG L
Sbjct: 268 STSGISPDIMFNPHGMPSRMTIGML 292



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
           GY Y G E +YSG+ G  ++  I+ GVV+YQRLRHMV DK+Q +     DP  +      
Sbjct: 353 GYEYLGAEELYSGMHGEPLKTHIYMGVVYYQRLRHMVLDKFQVRATGPIDPLTRQPVKGR 412

Query: 828 GPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVE 870
              G V  G    ERD + S+   +   +R + C  + ++ +C E
Sbjct: 413 KKHGGVRFGEM--ERDSLISHGTSALLADRLLKCSDACEDWVCPE 455


>gi|56541770|emb|CAI30267.1| hypothetical protein [Pongo abelii]
          Length = 1116

 Score =  209 bits (532), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 231/904 (25%), Positives = 373/904 (41%), Gaps = 159/904 (17%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P  V + ++   +        +GR+PIML+S    L   TPA+  + 
Sbjct: 99  PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNRVLTGKTPAEFAKL 158

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
            E P + GGYFIV G EK+            I I+    KNR ++ +D    +G  + S 
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206

Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
             ++ +  N                     V+ F   G        + + +    M   G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266

Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
             ++   +  I TQ  +  + G ++ ++++        ++E    +L + IL H+   ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326

Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
             +  C+ + +  +   + QG  ++D  D    + +   G L    +  L KK  S    
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFGDLFKKFNSEMKK 386

Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGK-NSTLQLMQASGFVIMAE 440
           +  +          D+      +    A  N ++TGN S  +     Q+ Q         
Sbjct: 387 IADQVIPKQRAAQFDVVNTCAKTRSPMAWVNAISTGNWSLKRFKMDRQVNQV-------- 438

Query: 441 NINRMRYMSHFRAVHR-GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
            + R+ Y+S    + R  S F++ R                 V  P+G  CGL+ +L   
Sbjct: 439 -LYRLLYISALGMMTRISSQFEKTRK----------------VSVPEGEACGLVKNLALM 481

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             I+  +    + ++ S L    +  L     S P    +V L+G I+G I D     LV
Sbjct: 482 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 538

Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
              R+++  G   E +  S  +               +Y+ +  GR+ RP +        
Sbjct: 539 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 587

Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
                   LA G            +E++   E+   +I +  +      TTH E+     
Sbjct: 588 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 646

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A LIP P  NQSPRN YQC MGKQ MGT   N R +    +Y L  P  P  +   
Sbjct: 647 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 706

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + ++ +  P G NA VAV+SY+GYD+EDA++LNK+S +RGF    ++K+    L+    
Sbjct: 707 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 763

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y  +T +  V G M+ A     +  ++ L           D  G     + +E+K    
Sbjct: 764 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 807

Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
            LV        + P+       + +Y  V   Y G  +  +E V +SS   +   +    
Sbjct: 808 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 864

Query: 889 AYIGYRIQRNPTVGDKFASRAGQ-KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMT 947
             +  R  R P +GDKF+SR GQ KG+C +  P ED+PF DSG+ PDI+ NPHGFPSRMT
Sbjct: 865 --MLLRQTRRPEIGDKFSSRHGQKKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMT 922

Query: 948 IGFL 951
           +G L
Sbjct: 923 VGKL 926



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GYNY G + + SG+ G  ++A I+FG V+YQ+L+HMV DK   +    R    +   +  
Sbjct: 963  GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1022

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG + +G    ERD +  Y
Sbjct: 1023 SRDGGLRLGEM--ERDCLIGY 1041


>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
          Length = 1174

 Score =  209 bits (532), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 176/610 (28%), Positives = 272/610 (44%), Gaps = 108/610 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A R  +I   +   LATGN    K +     QA   V  ++ +NR+ +   +S
Sbjct: 429 KDFNLELAIRTRTITDGLKYSLATGNWGDQKKA----HQARAGV--SQVLNRLTFVSTLS 482

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPS 508
           H R ++     ++ + + PRQL    WG ICP  TP+G+  GL+ +L     IS    PS
Sbjct: 483 HLRRLN-SPVGRDGKLARPRQLHNTQWGMICPAETPEGSCVGLVKNLALMAYISVGSQPS 541

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD--QIATSLVPKLRMLK 566
            +L      L    M  L  +  S  + A  + ++G  VG   D  Q+  +L    R + 
Sbjct: 542 PIL----EFLEEWSMENLEEIAPSAIQDATKIFVNGCWVGIHRDPEQLMNTLKKLRRQMD 597

Query: 567 IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL---------------- 610
           I+  ++    +I   +           + ++T  GR+ RP++ +                
Sbjct: 598 IIVSEVSMVRDISDRE-----------IRIYTDAGRICRPLLIVENQKLLLKKRHIDLLK 646

Query: 611 -------------AAGNIEWIGTFEQVFMDICIT----MKEAYPGITTHRELSKTDFLSN 653
                        A+G +E+I T E+  + + ++     +  Y    TH E+  +  L  
Sbjct: 647 EREYNNYGWQDLVASGVVEYIDTLEEETIMLSMSPDQLQESGYCSSYTHCEIHPSMILGV 706

Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
            A++IP PD NQSPRN YQ  MGKQ MG    N+  +     + L  P  P       + 
Sbjct: 707 CASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRSMEY 766

Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
           L     P G NAIVA+ SYTGY+ ED++ILN+ + +RGF     F+S+F      Y  Y 
Sbjct: 767 LRFRELPAGINAIVAIASYTGYNQEDSVILNEGAVDRGF-----FRSVF------YRSYK 815

Query: 774 TETMYSGVDGSMMQAQIFF--GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
                 G+D    Q ++F      H Q +R                    A+ DKL  DG
Sbjct: 816 DSESKKGLD----QEELFERPDPNHVQGMRM-------------------AVYDKLDDDG 852

Query: 832 LVYVGAKLNERDPMYS---YWKESENRY-VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
           ++  G +++  D +        E+E+      +   K +  V + R  +G  +   VT N
Sbjct: 853 IIAPGTRVSGDDVLIGKTLTLPENEDELDAQAKRFTKRDCSVFMRRSETGIIDQVMVTIN 912

Query: 888 ------CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                 C  I  R  + P +GDKFASR GQKG C +++  ED+PFT  G+ PDI+ NPH 
Sbjct: 913 QEGYKFCK-IRVRTVKTPQIGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 971

Query: 942 FPSRMTIGFL 951
            PSRMT+G L
Sbjct: 972 IPSRMTVGHL 981



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSW--------DGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V +  +         +  +  TF   VG+VPIML+S  C L  L
Sbjct: 112 PNEARLRNLTYSAPLYVDITKTLIKEGDDPIEALSQKTF---VGKVPIMLRSTYCLLNGL 168

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 169 TDRDLTELNECPLDPGGYFIINGSEKVL 196



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY+  G E +++G  G  + AQIF G  +YQRL+HMV DK  ++
Sbjct: 1019 GYHLRGNEVLFNGHTGRKLNAQIFIGPTYYQRLKHMVDDKIHSR 1062


>gi|154336907|ref|XP_001564689.1| DNA-directed RNA polymerase polypeptide [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061724|emb|CAM38755.1| DNA-directed RNA polymerase polypeptide [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1125

 Score =  209 bits (532), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 240/976 (24%), Positives = 397/976 (40%), Gaps = 164/976 (16%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFE-IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYY 130
           HIASFD +++  L   + + + +E + +      +      +  P+   G    H  K+ 
Sbjct: 29  HIASFDHLIEVELQRILLNESNVEIKSVVDPDFLIRYQNIRVCRPQEIVGKG--HIPKFV 86

Query: 131 -PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE---VGRVPIMLKSKRCHLRNLTPAQ 186
            P E R     Y G   V V ++   ++     ++   +G +PIMLKSK C+L   T  +
Sbjct: 87  TPQECRIRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIPIMLKSKCCNLYRKTREE 146

Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
           L+   E P + GGYFI+ G EK+              ++    KNR ++ +D    I + 
Sbjct: 147 LVSMRECPLDPGGYFIIKGVEKVC------------LVQEQQSKNRVIIEADEHGNISAH 194

Query: 247 KRDESATNNVLHFVTNGSARFMFSHRK---------SMCLLGMMQSLH------------ 285
            + ++  +     VT      + +HR           +  LG+    H            
Sbjct: 195 VQSKTHYSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQHITQCIGTSPAFQ 254

Query: 286 -------EEG----IHTQHDSKVFFGQIFKEKL----QYDLRHLN--EVEICDYMLTNCI 328
                  EE     I TQ+D+  + G+  KE +    +   R +N  + +     L N +
Sbjct: 255 KILFPCFEEARGLNIFTQNDALQYIGEKRKETVWEVEETQQRQVNRSKADKAAEFLANVL 314

Query: 329 LPHL-DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG 387
           L H+ +    K     H    +  +V+GM++   + S++ +    G   +      E +G
Sbjct: 315 LCHIRESQMQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFYGNKRF------ETTG 368

Query: 388 TSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI---------- 437
           T   L   D+   F    +++AM   L+  + +   N   QLM++   VI          
Sbjct: 369 TLMALLFEDLLKQFN-RVVKTAMDQQLSKRDSTRPFN-VKQLMESKMEVIQNGMRMAISS 426

Query: 438 --------------MAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICP 481
                         + + ++R+ Y++    + R  S F++ R  S PR L+   WG +CP
Sbjct: 427 GRWDLKRFNMNRQGITQVLSRLSYIACLGMMTRLASSFEKTRKVSGPRSLQPSQWGMVCP 486

Query: 482 VHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVM 541
             TP+G  CGL+ +  T  Q++  +       + +   SLG+  +  V  +   Q   V 
Sbjct: 487 CDTPEGESCGLVKNFATLSQVTLDMNDHY---VRASAHSLGVEEIDTVTPTDFLQYYSVF 543

Query: 542 LDGRIVGY-------------------ILDQIATSLVPKLRMLKI--VGEKIPKSLEIVY 580
           L+G ++G                    +   ++ S+ P+ R ++I   G +I + L IV 
Sbjct: 544 LNGTLIGIHRYPNRLCAGIRALRRSGRLHPHVSISMQPRQRTVQIGSDGGRIVRLLIIVR 603

Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
             +P          +L     R+      LA G IE++   E     I +   +  P  T
Sbjct: 604 GGKPA-----VTSAHLDRLRDRLCTHNDFLAEGLIEYVDVNESNDCLIAVYPADIGP-YT 657

Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
           TH E+     L  +A +IP P  NQS RN +Q  MGKQ +GT  LN   +    L     
Sbjct: 658 THLEVEPLSLLGVVAGIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAY 717

Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
           P  P  R         +    G NA+V V+SY+GYD+EDA + NKSS +RG+    + + 
Sbjct: 718 PQRPLCRTRAMSLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRK 777

Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
             ++LE    Y G E                F V+       +  +K      F      
Sbjct: 778 HEVDLE---KYAGGE----------------FDVI-------LPPEKNSGSGKF------ 805

Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKE---SENRYVTCRYSGKEEMCVEVVRMS-- 875
                 L PDG+   GA + + D + + +      + R     Y   +   V+ V +S  
Sbjct: 806 ----KALNPDGVASKGAFVQQYDVLVNKFTPVAGGDPRPAPLVYKYPQLAVVDHVIISPP 861

Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
             +     V      I   + R P  GDKF+SR GQKG+  +     D+PF + G+ PD+
Sbjct: 862 GDYDRSLDVDQKIKVITREV-RPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDM 920

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPHGFPSRMT+G L
Sbjct: 921 IMNPHGFPSRMTVGKL 936



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            L  GYNY+G +  YSG+ G +MQ  +FFG ++YQRL+HMV+DK   +    R    +   
Sbjct: 970  LSFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPT 1029

Query: 825  DKLGPDGLVYVGAKLNERDPMYSYWKES 852
            +     G + VG    ERD M  Y   S
Sbjct: 1030 EGRSRSGGLRVGEM--ERDCMVGYGASS 1055


>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
 gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
          Length = 1224

 Score =  209 bits (531), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 232/926 (25%), Positives = 370/926 (39%), Gaps = 186/926 (20%)

Query: 154  DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
            D  +G  F   +GR+PIML+SK C+L + T + L +  E P + GGYFI+ G EK+   L
Sbjct: 159  DSDSGKVF---IGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV---L 212

Query: 214  INNRRN-------------HPI---AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV- 256
            I   R+              PI   A  R+A +      S L V + + + + S T    
Sbjct: 213  IAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLFAREGNSSRTIKAT 272

Query: 257  ----------------LHFVTNGSARFMFSHRKSMC-------LLGMMQSLHEEGIHTQH 293
                            L  + +G    +  H   +C       +L M++   E+G   Q 
Sbjct: 273  LPYIKQDIPIVIIFRALGIIPDGE---ILEH---ICYDVNDWQMLEMLKPCVEDGFVIQ- 325

Query: 294  DSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTCKL 349
            D +     I +      ++    ++    +L    LPH+         K   L +M  +L
Sbjct: 326  DRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYMINRL 385

Query: 350  FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK-----------KEKSGTSAVLKESDIY 398
                      D  D    + +   G L  QL K           +    T    K+ ++ 
Sbjct: 386  LLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDIFRYMQRTVEEAKDFNMK 445

Query: 399  AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
             A  A +I S +   LATGN    K +       S    +++ +NR  Y S    + R +
Sbjct: 446  LAINAKTITSGLKYALATGNWGEQKKAM------SSRAGVSQVLNRYTYSSTLSHLRRTN 499

Query: 459  --YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS------------- 503
                ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+    IS             
Sbjct: 500  TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLS 559

Query: 504  --------EYIP----------------------SKVLAQIPSVLVSLGMLPLTPVIQSI 533
                    +YIP                      ++++  + ++     + P   +++ I
Sbjct: 560  EWGMEPLEDYIPHQSPEATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMVRDI 619

Query: 534  PEQALMVMLD-GRIVG--YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMG- 589
             E+ L +  D GR+    +I+D   T    +LR+ K     I K +   Y +  E G   
Sbjct: 620  REKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRK---GHISKLMATEY-QDIEGGFED 675

Query: 590  ---------LYPGLYLFTGPGRMLRPVMNLAAGNIEWI--GTFEQVFMDICITMKEAYPG 638
                     L  GL  +         ++++   ++E +   TF +   D+   +K  +  
Sbjct: 676  SEEYTWTSLLNDGLVEYIDAEEEETILISMQPEDLEPVQENTFNEDDDDLARRIKATHHA 735

Query: 639  IT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
             T TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +       
Sbjct: 736  TTFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQAAMGKQAMGVFLTNYNVRMDTMANI 795

Query: 698  LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
            L  P  P       + L     P G NAIVA+  Y+GY+ ED+MI+N+SS +RG      
Sbjct: 796  LYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLF 855

Query: 758  FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            F+S +++ E  Y    TET       + +            R++H               
Sbjct: 856  FRS-YMDQEKKYGMSITETFEKPQRTNTL------------RMKH--------------- 887

Query: 818  PANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCVE 870
                   DKL  DGL+  G +++  D       P+    +E   R     Y  K +    
Sbjct: 888  ----GTYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDEEELGQRTA---YHSKRDASTP 940

Query: 871  VVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
            +    +G  +   +T N   + +     R  + P +GDKFASR GQKG   + +  ED+P
Sbjct: 941  LRSTENGIVDQILITTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYGREDMP 1000

Query: 926  FTDSGLVPDIVFNPHGFPSRMTIGFL 951
            FT  G+VPD++ NPH  PSRMT+  L
Sbjct: 1001 FTAEGIVPDLIINPHAIPSRMTVAHL 1026



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + +QIFFG  +YQRLRHMV DK   +
Sbjct: 1061 EHGYQSRGFEVMYNGHTGKKLMSQIFFGPTYYQRLRHMVDDKIHAR 1106


>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
 gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
          Length = 1222

 Score =  209 bits (531), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 229/927 (24%), Positives = 363/927 (39%), Gaps = 186/927 (20%)

Query: 154  DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
            D ++G  F   +GR+PIML+SK C+L + T + L +  E P + GGYFI+ G EK+   L
Sbjct: 155  DSESGKVF---IGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV---L 208

Query: 214  INNRRN-------------HPI---AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV- 256
            I   R+              PI   A  R+A +      S L V +    R+ S++  + 
Sbjct: 209  IAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYG--RESSSSRTIK 266

Query: 257  ------------------LHFVTNGSARFMFSHRKSMC-------LLGMMQSLHEEGIHT 291
                              L  + +G    +  H   +C       +L M++   E+G   
Sbjct: 267  ATLPYIKQDIPIVIIFRALGIIPDGE---ILEH---ICYDVNDWQMLEMLKPCVEDGFVI 320

Query: 292  QHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTC 347
            Q D +     I +      ++    ++    +L    LPH+         K   L +M  
Sbjct: 321  Q-DRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 379

Query: 348  KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK-----------KEKSGTSAVLKESD 396
            +L          D  D    + +   G L  QL K           +    T     + +
Sbjct: 380  RLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQRTVEEANDFN 439

Query: 397  IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
            +  A  A +I S +   LATGN    K +       S    +++ +NR  Y S    + R
Sbjct: 440  MKLAINAKTITSGLKYALATGNWGEQKKAM------SSRAGVSQVLNRYTYSSTLSHLRR 493

Query: 457  GS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS----------- 503
             +    ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+    IS           
Sbjct: 494  TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITF 553

Query: 504  ----------EYIP----------------------SKVLAQIPSVLVSLGMLPLTPVIQ 531
                      +YIP                      ++++  + ++     + P   +I+
Sbjct: 554  LSEWGMEPLEDYIPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIR 613

Query: 532  SIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMG-- 589
             I E+ L +  D   V   L  +        + LK+    I K +   Y +  E G    
Sbjct: 614  DIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHINKLMATEY-QDIEGGFEDS 672

Query: 590  --------LYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQV----FMDICITMKEAYP 637
                    L  GL  +         ++ +   ++E +G  E+      MD    +K    
Sbjct: 673  EEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPMGEEEETQNDTAMDPAKRIKATQN 732

Query: 638  GIT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
              T TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +      
Sbjct: 733  ATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFNVRMDTMAN 792

Query: 697  RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
             L  P  P       + L     P G NAIVA+  Y+GY+ ED+MI+N+SS +RG     
Sbjct: 793  ILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSL 852

Query: 757  IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
             F+S +++ E  Y    TET       + +            R++H              
Sbjct: 853  FFRS-YMDQEKKYGMSITETFEKPHRTNTL------------RMKH-------------- 885

Query: 817  DPANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCV 869
                    DKL  DGL+  G +++  D       P+    +E   R     Y  K +   
Sbjct: 886  -----GTYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDEEELGQRTA---YHSKRDAST 937

Query: 870  EVVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
             +    +G  +   +T N   + +     R  + P +GDKFASR GQKG   + +  ED+
Sbjct: 938  PLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDM 997

Query: 925  PFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            PFT  G+VPD++ NPH  PSRMT+  L
Sbjct: 998  PFTADGIVPDLIINPHAIPSRMTVAHL 1024



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  + AQIFFG  +YQRLRHMV DK   +
Sbjct: 1059 EHGYHSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1104


>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
 gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
          Length = 1220

 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 231/919 (25%), Positives = 369/919 (40%), Gaps = 190/919 (20%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV--------RLLINN 216
            +GRVPIML+SK C L  LT + L +  E P + GGYFI+ G EK++         ++   
Sbjct: 162  IGRVPIMLRSKYCLLDELTESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVF 221

Query: 217  RRNHP-----IAIKRNAWKNRGLLFSDLGV--YIR--SVKRDESAT-------------N 254
            +++ P     IA  R+A +      S L V  Y R  S  R   AT              
Sbjct: 222  KKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTNRTIKATLPYIKQDIPIVIIF 281

Query: 255  NVLHFVTNGSARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKL 307
              L  + +G    +  H   +C       +L +++   EEG   Q D +     I +   
Sbjct: 282  RALGIIPDGE---ILEH---ICYDVNDWQMLELLKPCVEEGFVIQ-DRETALDFIGRRGT 334

Query: 308  QYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTCKLFHVVQGMVQLDSED 363
               ++    ++    +L    LPH+         K   L +M  +L          D  D
Sbjct: 335  ALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRD 394

Query: 364  SIMLQEIMTGGSLYLQLLKKE-KSGTSAVL----------KESDIYAAFRASSIESAMTN 412
                + +   G L  QL K   +  T  +L          K+ ++  A +A++I + +  
Sbjct: 395  HFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNLKLAVKATTITAGLKY 454

Query: 413  FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPRQ 470
             LATGN    K +   +   +G   +++ +NR  Y S    + R +    ++ + ++PRQ
Sbjct: 455  ALATGNWGEQKKA---MTSRAG---VSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQ 508

Query: 471  LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
            L    WG +CP  TP+G  CGL+ +L+    IS  + +  L  I + L   GM PL   +
Sbjct: 509  LHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS--VGTDPLP-IITFLNEWGMEPLEDYV 565

Query: 531  QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL 590
                  A  V ++G  V + + +    LV  +R L+  G+ +   + IV   R ++    
Sbjct: 566  PHQSPDATRVFVNG--VWHGIHRNPAKLVDTIRKLRRKGD-VTSEVSIVRDIREKE---- 618

Query: 591  YPGLYLFTGPGRM------------------------LRPVMN----------------- 609
               L +FT  GR+                        +R +M                  
Sbjct: 619  ---LKIFTDAGRVYRPLFIVDENEETGVKELKLRKGHIRKLMMTEYQDIEGGFEEEDINY 675

Query: 610  -----LAAGNIEWIGTFEQVFMDICITMKEAYPGIT-----------------------T 641
                 L  G +E+I   E+  + I +  ++  P I                        T
Sbjct: 676  TWSSLLNEGLVEYIDAEEEETILIAMQHEDLDPTIEAADPEEELDPAKRIKAIHHSSTFT 735

Query: 642  HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
            H E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P
Sbjct: 736  HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYP 795

Query: 702  ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
              P       + L     P G NAIVA+  Y+GY+ ED+MI+N+SS +RG      F+S 
Sbjct: 796  QKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS- 854

Query: 762  FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
            +++ E       TE+       + +            R++H                   
Sbjct: 855  YMDQEKRIGMSITESFEKPQRTNTL------------RMKH------------------- 883

Query: 822  ALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSG 877
               DKL  DGL+  G +++  D +         ++E       +  K +    +    +G
Sbjct: 884  GTYDKLDDDGLIAPGVRVSGDDMIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENG 943

Query: 878  FTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
              +   +T N   + +     R  + P +GDKFASR GQKG   + +  ED+PFT  G+V
Sbjct: 944  IVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVV 1003

Query: 933  PDIVFNPHGFPSRMTIGFL 951
            PD++ NPH  PSRMT+  L
Sbjct: 1004 PDLIINPHAIPSRMTVAHL 1022



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQIFFG  +YQRLRHMV DK   +
Sbjct: 1057 EHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1102


>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
          Length = 1261

 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 233/926 (25%), Positives = 371/926 (40%), Gaps = 191/926 (20%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            VG++PIM+KSK CHL       L    E P + GGYF++ G EK+   LI   R+    +
Sbjct: 188  VGKLPIMVKSKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKV---LIAQERSAANIV 244

Query: 225  K----------------RNAWKNRGLLFSDLGVYIRSVKRDESA-------TNNVLHFVT 261
            +                R+A +    L S +   ++   + +SA        +  L FV 
Sbjct: 245  QVFKKAQPSAYTYTAEIRSALEKGSRLISSM--MLKLYGKGDSARGGFGQTIHTTLPFVK 302

Query: 262  NG-------------SARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
            +              S   + +H    R    +L M++   EE    Q D +V    I K
Sbjct: 303  SDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQ-DREVALDFIGK 361

Query: 305  E--KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQ 358
               + Q  L     V +   +L    LPH+         K   L +M  KL     G  +
Sbjct: 362  RGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRRE 421

Query: 359  LDSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES-------DIYAAFRASSIE 407
             D  D    + +   G L  +L    +++  +  +  L+         ++    +  ++ 
Sbjct: 422  PDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLS 481

Query: 408  SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRS 465
            + +   LATGN    K +    M ++  V  ++ +NR  + S    + R +    ++ + 
Sbjct: 482  NGLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFASTLSHLRRTNTPIGRDGKL 535

Query: 466  SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML- 524
            ++PRQL    WG +CP  TP+G  CGL+ +L+  C +S   PS+ L +    +++ GM  
Sbjct: 536  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEF---MINRGMEV 592

Query: 525  -----PL-----TPV--------IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR--- 563
                 PL     T +        +   P+  +  +LD R   Y+  Q   SLV ++R   
Sbjct: 593  VEEYEPLRYPHATKIFVNGVWVGVHQDPKHLVNQVLDTRRKSYL--QYEVSLVREIRDQE 650

Query: 564  --MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP--GRMLR--------PVMNLA 611
              +    G  +     +     PE G+    G  + T     R+ +        P M + 
Sbjct: 651  FKIFSDAGRVMRPVFTVQQEDDPETGIN--KGHLVLTKELVNRLAKEQAEPPEDPSMKIG 708

Query: 612  ------AGNIEWIGTFEQVFMDICITMKE------AYPGITT------------------ 641
                  AG +E++   E+    IC+T ++         GI+T                  
Sbjct: 709  WEGLIRAGAVEYLDAEEEETSMICMTPEDLELYRLQKAGISTDEDMGDDPNKRLKTKTNP 768

Query: 642  ------HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL 695
                  H E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +     
Sbjct: 769  TTHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMA 828

Query: 696  YRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHG 755
              L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RG    
Sbjct: 829  NILYYPQKPLGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 888

Query: 756  CIFKSMF-IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF 814
              F+S    E + G NY                 ++F    H   LR             
Sbjct: 889  LFFRSYSDQEKKVGLNY----------------TEVFEKPFHQNTLR------------- 919

Query: 815  GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK--ESENRYVTCRYS--GKEEMCVE 870
                      DKL  DG+V  G +++  D +       ++E + +  R +   + ++   
Sbjct: 920  ----MKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDAETQDLGTRTTMHQRRDISTP 975

Query: 871  VVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
            +    +G  +   VT N   + Y     R  + P +GDKFASR GQKG   V +  ED+P
Sbjct: 976  LRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMP 1035

Query: 926  FTDSGLVPDIVFNPHGFPSRMTIGFL 951
            FT  G+ PDI+ NPH  PSRMTI  L
Sbjct: 1036 FTREGVTPDIIINPHAIPSRMTIAHL 1061



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1098 GYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHAR 1141


>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
          Length = 1176

 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 201/695 (28%), Positives = 302/695 (43%), Gaps = 120/695 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  LLK+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFKNLLKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA-- 459

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 460 --HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 621

Query: 604 LRPVM----------------------------NL-AAGNIEWIGTFEQVFMDICIT--- 631
            RP++                            NL A+G +E+I T E+  + I ++   
Sbjct: 622 CRPLLIVENGALLLKKKHIDHLKERDYNNYGWQNLVASGVVEYIDTLEEETVMIAMSPDD 681

Query: 632 ---MKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
              +KE AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LAQVKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 742 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S+F       +Y  +E+   G        +  F     Q  + M    
Sbjct: 802 VERGF-----FRSVFYR-----SYKDSESKRLG------DQEEQFEKPTRQTCQGM---- 841

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
                         AL DKL  DG++  G +++  D +          + E    T RY+
Sbjct: 842 ------------RNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTRRYT 889

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQKGICS 916
            K +    +    +G  +   VT N      C  I  R  R P +GDKFASR GQKG C 
Sbjct: 890 -KRDASTFLRNSETGIVDQVMVTLNREGYKFCK-IRVRSVRIPQIGDKFASRHGQKGTCG 947

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 948 IQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 982



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 33/162 (20%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGP-VGIHFNKYY 130
            + SFD  +   +   VED  PIE +           +A  S  ++   P   + F++ Y
Sbjct: 43  QLDSFDEFIQMSVQRIVEDSPPIELQ----------AEAQHSSGEIETPPKYLLKFDQIY 92

Query: 131 -----------------PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRV 168
                            P EAR     YS P  V +  +   +       +     +G++
Sbjct: 93  LSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKENEEPIETQHQKIFIGKI 152

Query: 169 PIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           PIML+S  C L NLT   L E  E P + GGYFI+ G EK++
Sbjct: 153 PIMLRSTYCLLSNLTDRDLTELNECPLDPGGYFIINGSEKVL 194



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1018 EYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063


>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei QM6a]
          Length = 1262

 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 230/923 (24%), Positives = 375/923 (40%), Gaps = 185/923 (20%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            VG++PIM+KSK CHL   T   L    E P + GGYF++ G EK+   LI   R+    +
Sbjct: 189  VGKLPIMVKSKICHLSRETDDSLFLVNECPYDQGGYFVINGSEKV---LIAQERSAANIV 245

Query: 225  K----------------RNAWKNRGLLFSDLGVYIRSVKRDESA-------TNNVLHFVT 261
            +                R+A +    L S +   ++   + +SA        +  L FV 
Sbjct: 246  QVFKKAQPSAYTYTAEIRSALEKGSRLISSM--MLKLYGKGDSARGGFGQTIHTTLPFVK 303

Query: 262  NG-------------SARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
            +              S   + +H    R    +L M++   EE    Q D +V    I K
Sbjct: 304  SDLPVAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQ-DREVALDFIGK 362

Query: 305  E--KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQ 358
               + Q  L     V +   +L    LPH+         K   L +M  KL     G  +
Sbjct: 363  RGNRDQAGLGREKRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRRE 422

Query: 359  LDSEDSIMLQEIMTGGSLYLQL----LKKEKSGTSAVLKES-------DIYAAFRASSIE 407
             D  D    + +   G L  +L    +++  +  +  L+         ++    +  ++ 
Sbjct: 423  PDDRDHFGKKRLDLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLS 482

Query: 408  SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRS 465
            + +   LATGN    K +    M ++  V  ++ +NR  + S    + R +    ++ + 
Sbjct: 483  NGLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFASTLSHLRRTNTPIGRDGKL 536

Query: 466  SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML- 524
            ++PRQL    WG +CP  TP+G  CGL+ +L+  C +S   PS+ L +    +++ GM  
Sbjct: 537  AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPSEPLIEF---MINRGMEV 593

Query: 525  -----PL-----TPV--------IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR--M 564
                 PL     T +        I   P+  +  ++D R   Y+  Q   SLV ++R   
Sbjct: 594  VEEYEPLRYPHATKIFVNGVWVGIHQDPKHLVQQVVDTRRKSYL--QYEVSLVREIRDQE 651

Query: 565  LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLR-----------PVMNLA-- 611
             KI  +       +  +++ E+     P  +L      + +           P M +   
Sbjct: 652  FKIFSDAGRVMRPVFTVQQDEESDTGIPKGHLVLTKDLVNKLAQEQAEPPEDPSMKIGWE 711

Query: 612  ----AGNIEWIGTFEQVFMDICIT------MKEAYPGITT-------------------- 641
                AG +E++   E+    IC+T       +    GI T                    
Sbjct: 712  GLIRAGAVEYLDAEEEETAMICMTPEDLELYRAQKAGIATEEDVGDDPNKRLKTRTNPTT 771

Query: 642  ----HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYR 697
                H E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +       
Sbjct: 772  HMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANI 831

Query: 698  LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
            L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RG     +
Sbjct: 832  LYYPQKPLGTTRSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRG-----L 886

Query: 758  FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
            F+S+F      +  Y  +    G++ +    ++F    H   LR                
Sbjct: 887  FRSLF------FRSYSDQEKKVGLNYT----EVFEKPFHQNTLR---------------- 920

Query: 818  PANKALEDKLGPDGLVYVGAKLNERDPMYSYWK--ESENRYVTCRYS--GKEEMCVEVVR 873
                   DKL  DG+V  G +++  D +       +++ + +  R +   + ++   +  
Sbjct: 921  -MKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDADTQDLGTRTTMHQRRDISTPLRS 979

Query: 874  MSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
              +G  +   VT N   + Y     R  + P +GDKFASR GQKG   V +  ED+PFT 
Sbjct: 980  TENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTR 1039

Query: 929  SGLVPDIVFNPHGFPSRMTIGFL 951
             G+ PDI+ NPH  PSRMTI  L
Sbjct: 1040 EGITPDIIINPHAIPSRMTIAHL 1062



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1099 GYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHAR 1142


>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
          Length = 1173

 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 193/694 (27%), Positives = 294/694 (42%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 340 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 399

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 400 FLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH- 458

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 459 ---QARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 512

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 513 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 568

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 569 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 619

Query: 604 LRPV-----------------------------MNLAAGNIEWIGTFEQVFMDICITMKE 634
            RP+                             M +A G +E+I T E+  + I +++ +
Sbjct: 620 CRPLLIVENGSLLLKKRHIDRLKERDYDNYGWQMLVAEGVVEYIDTLEEETVMIAMSLDD 679

Query: 635 -------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 680 LRHDKSYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 739

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N++VA++ YTGY+ ED++I+N S+
Sbjct: 740 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASA 799

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S          Y   E+   G        +  F     Q  + M    
Sbjct: 800 VERGFFRSVFFRS----------YKDAESKRIG------DQEEQFEKPTRQTCQGM---- 839

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
                         AL DKL  DG++  G +++  D +          E E    T RY+
Sbjct: 840 ------------RNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRYT 887

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 888 -KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 946

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 947 QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 980



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1016 EYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1061



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKA--------GGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V +    +             TF   +G++PIML+S  C L  L
Sbjct: 108 PNEARLRNLTYSAPLYVDILKRVEKHKEEPVETLHQKTF---IGKIPIMLRSTYCLLSTL 164

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 165 TDRDLTELNECPLDPGGYFIINGSEKVL 192


>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
            versicolor FP-101664 SS1]
          Length = 1231

 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 247/970 (25%), Positives = 373/970 (38%), Gaps = 204/970 (21%)

Query: 130  YPTEARQTRSVYSGPFNVTV------------------AWSWDGKAGGTFTKEV--GRVP 169
            +P EAR     YS P  + +                   W  +       T++V  G+VP
Sbjct: 119  FPQEARLRNLTYSAPLYIEMKKRVLLGREDPDSATGDMVWETEHDDNPEDTRKVWIGKVP 178

Query: 170  IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN----RRNHP 221
            IML+S  C L  L   +L +  E P + GGYFI+ G EK++    R+  N+     +  P
Sbjct: 179  IMLRSTFCILHGLEDDELYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQP 238

Query: 222  IAIK-----RNAWKNRGLLFSDLGV--YIRSVKRDESATNNVLH---------------F 259
              I      R+A +  G   S   V  Y RS +R   +  NV+                F
Sbjct: 239  SPISFLAEIRSAVEKGGKTISQFQVKLYHRSQER---SLGNVMKATIPYIKVDIPIWVVF 295

Query: 260  VTNG--SARFMFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRH 313
               G  S R +  H     +   +L M++   +EG   Q D ++    I        L  
Sbjct: 296  RALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQ-DREIALDYIGNRGTTTGLNR 354

Query: 314  LNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQE 369
               +     +L   +LPH+         K     +M  +L         LD  D    + 
Sbjct: 355  ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKR 414

Query: 370  IMTGG----SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGN 418
            +   G    +L+  L +K        L       KE  +  A + ++I + +   LATGN
Sbjct: 415  LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSLATGN 474

Query: 419  VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPRQLRTDAW 476
                K +       S    +++ +NR  Y S    + R +    +E + ++PRQL    W
Sbjct: 475  WGDQKKTM------SSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHW 528

Query: 477  GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ 536
            G +CP  TP+G  CGL+ +L+    IS      + A +   L   G+  L     S    
Sbjct: 529  GMVCPAETPEGQACGLVKNLSLMSCIS---VGSLSAPVIEFLEEWGLESLEENAHS-STP 584

Query: 537  ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYL 596
               V ++G  +G   D    +LV  ++ L+   + I   + +V   R  +       L L
Sbjct: 585  CTKVFVNGVWMGVHRD--PANLVKTIKKLR-RKDDISAEVSVVRDIRERE-------LRL 634

Query: 597  FTGPGRMLRP---------------VMNLAAGN----------------------IEWIG 619
            +T  GR+ RP               + NLA G                       IE + 
Sbjct: 635  YTDAGRVCRPLFIVENQQLLLQKKHIENLARGKEEPEKDATKFEYKWDNLIKDGVIELLD 694

Query: 620  TFEQVFMDICITMKE------AYPGIT-----------------------THRELSKTDF 650
              E+  + IC+T ++         GI                        TH E+  +  
Sbjct: 695  AEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKAPTNAHTWTHCEIHPSMI 754

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            L   A++IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P  P      
Sbjct: 755  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRS 814

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
             + L     P G NA+VA++ Y+GY+ ED++I+N+SS +RG      ++S +++LE    
Sbjct: 815  MEYLKFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRS-YMDLEKKSG 873

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
                E        S +            R++H   DK               LED    D
Sbjct: 874  IQQLEEFEKPTRDSTL------------RMKHGTYDK---------------LED----D 902

Query: 831  GLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
            GL+  G  +N  D +         +SE      R   K ++   +     G  +   +T 
Sbjct: 903  GLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITT 962

Query: 887  NC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
            N        I  R  R P +GDKFASR GQKG   + +  ED+PFT  G+ PDI+ NPH 
Sbjct: 963  NAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHA 1022

Query: 942  FPSRMTIGFL 951
             PSRMTIG L
Sbjct: 1023 IPSRMTIGHL 1032



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + GY   G E MY G  G  +QAQ++ G  +YQRL+HMV DK  ++
Sbjct: 1067 QKGYQSRGLEIMYHGHTGRKIQAQVYLGPTYYQRLKHMVDDKIHSR 1112


>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
            ARSEF 2860]
          Length = 1261

 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 238/967 (24%), Positives = 384/967 (39%), Gaps = 200/967 (20%)

Query: 133  EARQTRSVYSGPFNVTVAW-SWDGKAGGTFTKE--------VGRVPIMLKSKRCHLRNLT 183
            +A+QT    +G     +AW S D        K         VG++P+M+KSK CHL    
Sbjct: 147  DAQQTEYAKTGELPTRLAWRSEDAPEPENSNKPDAWKDMVFVGKMPVMVKSKVCHLSREH 206

Query: 184  PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK----------------RN 227
               L    E P + GGYF++ G EK+   LI   R+    ++                R+
Sbjct: 207  DENLFLVNECPYDQGGYFVINGSEKV---LIAQERSAANIVQVFKKAQPSPYTYTAEIRS 263

Query: 228  AWKNRGLLFSDLGVYIRSVKRDESA-------TNNVLHFVTNG-------------SARF 267
            A +    L S +   ++   + ESA        +  L FV                S   
Sbjct: 264  ALEKGSRLISSM--MLKLYGKGESARGGFGQTIHTTLPFVKADLPVAIVFRALGVVSDED 321

Query: 268  MFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--KLQYDLRHLNEVEICD 321
            + +H    RK   +L M++   EE    Q D +V    I K   + Q  L     + +  
Sbjct: 322  ILNHICYDRKDSQMLEMLRPCIEEAFCVQ-DREVALDFIGKRGNRDQAGLGRDKRIRVAR 380

Query: 322  YMLTNCILPHLDDYWD----KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY 377
             +L    LPH+         K   + +M  KL     G  + D  D    + +   G L 
Sbjct: 381  DILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLL 440

Query: 378  LQL----LKKEKSGTSAVLKES-------DIYAAFRASSIESAMTNFLATGNVSAGKNST 426
             +L    +++  S  +  L+         ++    +  ++ + +   LATGN    K + 
Sbjct: 441  AKLFRGIMRRMHSELANYLRRCVEGNRHFNLAVGVKPGTLSNGLKYSLATGNWGDQKKA- 499

Query: 427  LQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHT 484
               M ++  V  ++ +NR  + S    + R +    ++ + ++PRQL    WG +CP  T
Sbjct: 500  ---MSSTAGV--SQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554

Query: 485  PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
            P+G  CGL+ +L+  C +S   P++ L      +++ GM  +          A  + ++G
Sbjct: 555  PEGQACGLVKNLSLMCYVSVGSPAEPLIDF---MINRGMEVIEEYEPLRYPHATKIFVNG 611

Query: 545  RIVG------YILDQI-----------ATSLVPKLR-----MLKIVGEKIPKSLEIVYLK 582
              VG      ++ DQ+             SLV ++R     +    G  +     +    
Sbjct: 612  TWVGVHQDPKHLADQVFDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQSKN 671

Query: 583  RPEKGM-----GLYPGLYLFTGPGRMLR--------PVMN------LAAGNIEWIGTFEQ 623
             PE G+     GL   L       R+ +        P M       + AG +E++   E+
Sbjct: 672  DPETGLEKGQLGLTKDLV-----NRLAQEQADPPDDPEMKTGWEGLIKAGAVEYLDAEEE 726

Query: 624  VFMDICITMKE------AYPGIT------------------------THRELSKTDFLSN 653
                IC+T ++         G+                         TH E+  +  L  
Sbjct: 727  ETSMICMTPEDLELYRLQKAGVAVDDDHGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGI 786

Query: 654  LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
             A++IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P  P       + 
Sbjct: 787  CASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEF 846

Query: 714  LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
            L     P G NAIVA+  Y+GY+ ED++I+N+SS +RG     +F+S+F      +  Y 
Sbjct: 847  LKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRG-----LFRSLF------FRSYS 895

Query: 774  TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLV 833
             +    G++ +    +IF    H   LR                       DKL  DG+V
Sbjct: 896  DQEKKVGLNYT----EIFEKPFHQSTLR-----------------MKHGTYDKLDEDGIV 934

Query: 834  YVGAKLNERDPMYSYWK--ESENRYVTCRYSG--KEEMCVEVVRMSSGFTEGGSVTPNCA 889
              G +++  D +       + E + +  R +   + ++   +    +G  +   VT N  
Sbjct: 935  APGVRVSGEDIIIGKTAPIDPETQDLGARTTAHQRRDISTPLRSTENGIVDQVIVTVNAD 994

Query: 890  YIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
             + Y     R  + P +GDKFASR GQKG   V +  ED+PFT  G+ PDI+ NPH  PS
Sbjct: 995  NVKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPS 1054

Query: 945  RMTIGFL 951
            RMTI  L
Sbjct: 1055 RMTIAHL 1061



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1098 GYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHAR 1141


>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
          Length = 1261

 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 235/963 (24%), Positives = 382/963 (39%), Gaps = 191/963 (19%)

Query: 133  EARQTRSVYSGPFNVTVAW-SWDGKAGGTFTKE--------VGRVPIMLKSKRCHLRNLT 183
            +A+ T    SG     +AW S D        K         VG++P+M+KSK CHL    
Sbjct: 146  DAQHTEYAKSGELPTRLAWESEDVSEPENANKPDAWKDMVFVGKMPVMVKSKVCHLSREH 205

Query: 184  PAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK----------------RN 227
               L    E P + GGYF++ G EK+   LI   R+    ++                R+
Sbjct: 206  DENLFLVNECPYDQGGYFVINGSEKV---LIAQERSAANIVQVFKKAQPSPYTYTAEIRS 262

Query: 228  AWKNRGLLFSDLGVYIRSVKRDESA-------TNNVLHFVTNG-------------SARF 267
            A +    L S +   ++   + ESA        +  L FV +              S   
Sbjct: 263  ALEKGSRLISSM--MLKLYGKGESARGGFGQTIHTTLPFVKSDLPVAIVFRALGVVSDED 320

Query: 268  MFSH----RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE--KLQYDLRHLNEVEICD 321
            + +H    RK   +L M++   EE    Q D +V    I K   + Q  L     + +  
Sbjct: 321  ILNHICYDRKDSQMLEMLRPCIEEAFCVQ-DREVALDFIGKRGNRDQAGLGRDKRIRVAR 379

Query: 322  YMLTNCILPHLDDYWD----KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY 377
             +L    LPH+         K   + +M  KL     G  + D  D    + +   G L 
Sbjct: 380  DILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLL 439

Query: 378  LQL----LKKEKSGTSAVLKES-------DIYAAFRASSIESAMTNFLATGNVSAGKNST 426
             +L    +++  S  +  L+         ++    +  ++ + +   LATGN    K + 
Sbjct: 440  AKLFRGIMRRMHSELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKA- 498

Query: 427  LQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHT 484
                 A+    +++ +NR  + S    + R +    ++ + ++PRQL    WG +CP  T
Sbjct: 499  -----ANSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 553

Query: 485  PDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDG 544
            P+G  CGL+ +L+  C +S   P++ L      +++ GM  +          A  + ++G
Sbjct: 554  PEGQACGLVKNLSLMCYVSVGSPAEPLIDF---MINRGMEVIEEYEPLRYPHATKIFVNG 610

Query: 545  RIVG------YILDQI-----------ATSLVPKLR-----MLKIVGEKIPKSLEIVYLK 582
              VG      +++DQ+             SL+  +R     +    G  +     +    
Sbjct: 611  TWVGVHQDPKHLVDQVFDTRRKSYLQYEVSLIRDIRDQEFKIFSDAGRVMRPVFTVQQKN 670

Query: 583  RPEKGM-----GLYPGLYLFTGPGRMLRPVMN---------LAAGNIEWIGTFEQVFMDI 628
             PE G+     GL   L       +   P  +         + AG IE++   E+    I
Sbjct: 671  DPETGLEKGQLGLTKDLVNKLAQEQADPPDDSELKMGWEGLIKAGAIEYLDAEEEETSMI 730

Query: 629  CIT---------------MKEAYPG----------------ITTHRELSKTDFLSNLANL 657
            C+T               + + + G                + TH E+  +  L   A++
Sbjct: 731  CMTPEDLELYRLQKAGLSVDDDHEGGDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASI 790

Query: 658  IPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMD 717
            IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P  P       + L   
Sbjct: 791  IPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSMEFLKFR 850

Query: 718  NFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETM 777
              P G NAIVA+  Y+GY+ ED++I+N+SS +RG     +F+S+F      +  Y  +  
Sbjct: 851  ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRG-----LFRSLF------FRSYSDQEK 899

Query: 778  YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA 837
              G++ +    +IF    H   LR                       DKL  DG+V  G 
Sbjct: 900  KVGLNYT----EIFEKPFHQSTLR-----------------MKHGTYDKLDEDGIVAPGV 938

Query: 838  KLNERDPMYSYWK--ESENRYVTCRYSG--KEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            +++  D +       + E + +  R +   + ++   +    +G  +   VT N   + Y
Sbjct: 939  RVSGEDIIIGKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKY 998

Query: 894  -----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
                 R  + P +GDKFASR GQKG   V +  ED+PFT  G+ PDI+ NPH  PSRMTI
Sbjct: 999  VKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTI 1058

Query: 949  GFL 951
              L
Sbjct: 1059 AHL 1061



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G E MY+G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1098 GYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHAR 1141


>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
           quinquefasciatus]
 gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
           quinquefasciatus]
          Length = 1176

 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 199/694 (28%), Positives = 303/694 (43%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 343 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 402

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  LLK+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 403 FLFRGLFKNLLKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA-- 460

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 461 --HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 515

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 516 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 571

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 572 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 622

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT--- 631
            RP++ +                             A+G +E+I T E+  + I +T   
Sbjct: 623 CRPLLIVENGSLLLRKNHVDMLKERDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYD 682

Query: 632 MKE----AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           +K+    AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 683 LKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 742

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 743 HVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 802

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S+F       +Y  +E+   G        +  F   + Q  + M    
Sbjct: 803 VERGF-----FRSVFYR-----SYKDSESKKIG------DQEEQFEKPNRQTCQGM---- 842

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS---YWKESENRY--VTCRYS 862
                         AL DKL  DG++  G +++  D +        E+++     T RYS
Sbjct: 843 ------------RNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTKRYS 890

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 891 -KRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 949

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 950 QYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 983



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWS--------WDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V +  +         + +   TF   +G++PIML+S  C L  L
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTF---IGKIPIMLRSTYCLLSQL 167

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 168 TDRDLTELNECPLDPGGYFIINGSEKVL 195



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            S F++ E GY   G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1014 STFLQ-EYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1064


>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
          Length = 1228

 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 247/1003 (24%), Positives = 391/1003 (38%), Gaps = 205/1003 (20%)

Query: 101  KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVA---------- 150
            K  ++   K  IS+P    G    H    +P EAR     YS P  V ++          
Sbjct: 78   KRYEITFGKMYISKPSQTEGDGTTH--PMFPQEARLRNLTYSAPLYVDMSKKVFESDDNN 135

Query: 151  -------WSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYF 201
                   W      G     +V  G+VPIM++SK C LR+L   ++ E  E P + GGYF
Sbjct: 136  RVDNELEWKEQIVQGEDSDSQVYLGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGYF 195

Query: 202  IVGGHEKLVRLLINNRRNHP----------------IAIKRNAWKNRGLLFSDLGVYIRS 245
            ++ G EK+   LI   R+                  +A  R+A +    L S   + I+ 
Sbjct: 196  VINGSEKV---LIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLIS--AMQIKL 250

Query: 246  VKRDESATN---------------------NVLHFVTNGSA-RFMFSHRKSMCLLGMMQS 283
              RDE +++                       L  V +G     +        +L M++ 
Sbjct: 251  YGRDEKSSSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKP 310

Query: 284  LHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKF 339
              EEG   Q + +V    I +  +   +R    ++    +L   +LP++         K 
Sbjct: 311  CVEEGFVIQ-EREVALDFIGRRGV-LGIRREKRIQYAKDILQKELLPNITQEEGFETRKA 368

Query: 340  LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGTSAVL--- 392
              L +M  +L        + D  D    + +   G    +L+  L KK        +   
Sbjct: 369  FFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRC 428

Query: 393  ----KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY- 447
                KE ++  A ++ +I   +   LATGN    K +       S    +++ +NR  Y 
Sbjct: 429  VENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAM------SSRAGVSQVLNRYTYS 482

Query: 448  --MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-- 503
              +SH R  +     ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+    IS  
Sbjct: 483  STLSHLRRTN-TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVG 541

Query: 504  -------------------EYIPSKV--------------LAQIPSVLVSL--------G 522
                               +Y+PS                + + P+ LV           
Sbjct: 542  TPSEPISSFLRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNGD 601

Query: 523  MLPLTPVIQSIPEQALMVMLD-GRIVG--YILDQIATSLVPKLRMLKIVGEKIPKSLEIV 579
            + P   +I+ I E+ L +  D GR+    +I+D    S       LK+  E + + LE  
Sbjct: 602  ISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKG--DLKLKKEHVNRLLESS 659

Query: 580  YLKRPEKGMGLYPGL-------YLFTGPGRMLRPVM---NLAAGNIEWIGTFEQVFMDIC 629
            Y    ++    +  L       Y+       +   M   +L A       T +Q   D+ 
Sbjct: 660  YDGDEDEPSYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQQ---DLQ 716

Query: 630  ITMKEAYPG------------ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
            +  +E  P               TH E+  +  L   A++IP PD NQSPRN YQ  MGK
Sbjct: 717  MEEQELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGK 776

Query: 678  QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
            Q MG    N+  +       L  P  P       + L     P G NAIVA+  Y+GY+ 
Sbjct: 777  QAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQ 836

Query: 738  EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
            ED+MI+N+SS +RGF     F+S +++LE        ET         +           
Sbjct: 837  EDSMIMNQSSIDRGFFRSLFFRS-YMDLEKRQGMKALETFEKPSRSDTL----------- 884

Query: 798  QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESE 853
             RL+H                      +KL  DGL+  G +++  D +         ++E
Sbjct: 885  -RLKH-------------------GTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTE 924

Query: 854  NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN---CAYIGYRIQ--RNPTVGDKFASR 908
                  +Y  K +    +    SG  +   +T N     ++  R++  + P +GDKFASR
Sbjct: 925  ELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASR 984

Query: 909  AGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             GQKG   V +  ED+PFT  G+VPD++ NPH  PSRMT+  L
Sbjct: 985  HGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHL 1027



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1062 EHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHAR 1107


>gi|393794931|ref|ZP_10378295.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosoarchaeum
           limnia BG20]
          Length = 1115

 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 192/758 (25%), Positives = 325/758 (42%), Gaps = 103/758 (13%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  L+ GL   + ++  IE E      K+ + K  + +P++    +        P
Sbjct: 25  HLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMME--LDGSITHITP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     YS P  +  +   DGK   +    +G VP+M KS  C L N +  +LIE G
Sbjct: 83  AEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLIEHG 142

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN---RGLLFSDLGVYIRSV-- 246
           E P++ GGYFI+ G E+++  L +   N  I  + +   N   +  ++S +  Y   +  
Sbjct: 143 EDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRESVGGNTVFKAKVYSSIVGYRAKLEL 202

Query: 247 --KRDESATNNV------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE---------GI 289
             K D      +      +  VT   A  + S R+    + ++  +  E          +
Sbjct: 203 VMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLVDEIQNELEGSFEKAGDV 262

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            T  D+ V+  +     +  +     +++  + +L   +LPHL    ++  +K   L   
Sbjct: 263 PTAKDAIVYISKRIAPGMLEEF----QIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEA 318

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
            CKL  +  G +  D +D    + I   G +   L +              E+SG    +
Sbjct: 319 ACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGI 378

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
             + + AA R   I   + N +ATGN   G+    QL+         +  N +  +SH R
Sbjct: 379 --NAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLL---------DRTNYLSTISHLR 427

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            + +    +   + E R L    +G ICP  TP+G+ CGL+ +L  +  IS  +PS+   
Sbjct: 428 RI-QSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSE--- 483

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD--QIATSLVPKLRMLKI--- 567
           +I   L  LG +      + + +    + +DGR++GY  D  Q+A SL    R  KI   
Sbjct: 484 EIVEKLYDLGTIHFFDAKEDVKKDGARIFVDGRLIGYYKDGAQLAESLRDLRRNSKIHPH 543

Query: 568 VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAA 612
           VG    KS      KR          LY+    GR+LRP++                ++ 
Sbjct: 544 VGISFHKSEIEGSTKR----------LYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISK 593

Query: 613 GNIEW-----IGTFEQVFMD----ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
             + W     +G  E +  +      IT+ E      TH E+     L   A++IP P+ 
Sbjct: 594 KLLSWTDLLRMGVLEMIDANEEENCYITLDEKDTKKHTHLEVFPPAILGAGASIIPYPEH 653

Query: 664 NQSPRNMYQCQMGKQTMG--TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           NQSPRN Y+  M KQ++G  TP +N       + + +  P +P         L +++ P 
Sbjct: 654 NQSPRNTYESAMAKQSLGFSTPMMNT--STYVRQHLMLYPQTPIVNTKAMKLLGLEDRPA 711

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           G N +VAV+ + GY++EDA++L+++S +RG      F+
Sbjct: 712 GQNCVVAVLPFDGYNIEDAIVLSRASVDRGLGRTFFFR 749



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 865 EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
           E   V+ V M+    EGG +      I  R  R P +GDKFASR GQKG+  +   AEDL
Sbjct: 839 ETGVVDTVVMTQS-NEGGKMYK----IRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDL 893

Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P+T  G+ PD++ NPH FPSRMT+G  
Sbjct: 894 PYTADGISPDVLINPHAFPSRMTVGMF 920



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +G+ Y G ETMY G  G     ++F GVV+YQ+L HMV+DK   +
Sbjct: 956  AGFKYSGKETMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHAR 1000


>gi|329765755|ref|ZP_08257324.1| DNA-directed RNA polymerase subunit beta [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137821|gb|EGG42088.1| DNA-directed RNA polymerase subunit beta [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 1115

 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 192/758 (25%), Positives = 325/758 (42%), Gaps = 103/758 (13%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  L+ GL   + ++  IE E      K+ + K  + +P++    +        P
Sbjct: 25  HLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMME--LDGSITHITP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     YS P  +  +   DGK   +    +G VP+M KS  C L N +  +LIE G
Sbjct: 83  AEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLIEHG 142

Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN---RGLLFSDLGVYIRSV-- 246
           E P++ GGYFI+ G E+++  L +   N  I  + +   N   +  ++S +  Y   +  
Sbjct: 143 EDPNDPGGYFIINGSERVIVGLEDLSYNKIIVDRESVGGNTVFKAKVYSSIVGYRAKLEL 202

Query: 247 --KRDESATNNV------LHFVTNGSARFMFSHRKSMCLLGMMQSLHEE---------GI 289
             K D      +      +  VT   A  + S R+    + ++  +  E          +
Sbjct: 203 VMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLVDEIQNELEGSFEKAGDV 262

Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHM 345
            T  D+ V+  +     +  +     +++  + +L   +LPHL    ++  +K   L   
Sbjct: 263 PTAKDAIVYISKRIAPGMLEEF----QIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEA 318

Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKSGTSAVL 392
            CKL  +  G +  D +D    + I   G +   L +              E+SG    +
Sbjct: 319 ACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGI 378

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
             + + AA R   I   + N +ATGN   G+    QL+         +  N +  +SH R
Sbjct: 379 --NAVSAAIRPGIITDKLNNAIATGNWGRGRVGVTQLL---------DRTNYLSTISHLR 427

Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
            + +    +   + E R L    +G ICP  TP+G+ CGL+ +L  +  IS  +PS+   
Sbjct: 428 RI-QSPLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSE--- 483

Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD--QIATSLVPKLRMLKI--- 567
           +I   L  LG +      + + +    + +DGR++GY  D  Q+A SL    R  KI   
Sbjct: 484 EIVEKLYDLGTIHFFDAKEDVKKDGARIFVDGRLIGYYKDGAQLAESLRDLRRNSKIHPH 543

Query: 568 VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM---------------NLAA 612
           VG    KS      KR          LY+    GR+LRP++                ++ 
Sbjct: 544 VGISFHKSEIEGSTKR----------LYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISK 593

Query: 613 GNIEW-----IGTFEQVFMD----ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDC 663
             + W     +G  E +  +      IT+ E      TH E+     L   A++IP P+ 
Sbjct: 594 KLLSWTDLLRMGVLEMIDANEEENCYITLDEKDTKKHTHLEVFPPAILGAGASIIPYPEH 653

Query: 664 NQSPRNMYQCQMGKQTMG--TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
           NQSPRN Y+  M KQ++G  TP +N       + + +  P +P         L +++ P 
Sbjct: 654 NQSPRNTYESAMAKQSLGFSTPMMNT--STYVRQHLMLYPQTPIVNTKAMKLLGLEDRPA 711

Query: 722 GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
           G N +VAV+ + GY++EDA++L+++S +RG      F+
Sbjct: 712 GQNCVVAVLPFDGYNIEDAIVLSRASVDRGLGRTFFFR 749



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 865 EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
           E   V+ V M+    EGG +      I  R  R P +GDKFASR GQKG+  +   AEDL
Sbjct: 839 ETGVVDTVVMTQS-NEGGKMYK----IRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDL 893

Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P+T  G+ PD++ NPH FPSRMT+G  
Sbjct: 894 PYTADGISPDVLINPHAFPSRMTVGMF 920



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +G+ Y G ETMY G  G     ++F GVV+YQ+L HMV+DK   +
Sbjct: 956  AGFKYSGKETMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHAR 1000


>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
          Length = 1176

 Score =  206 bits (525), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 190/695 (27%), Positives = 295/695 (42%), Gaps = 118/695 (16%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 341 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 400

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 401 FLFRGLFKNLMKEVRMFAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA-- 458

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 459 --HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 513

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 514 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 569

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 570 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 620

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICITMKE 634
            RP++ +                             A+G +E+I T E+  + I + + +
Sbjct: 621 CRPLLIVENGQLLLKRNHVNMLKEREFNNYGWQVLVASGVVEYIDTLEEETVMIAMNLDD 680

Query: 635 ---------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
                    AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 681 LRGGQEKEYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 740

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN 
Sbjct: 741 NYHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 800

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ ERG+   C ++S          Y  +E+   G        +  F     Q  + M  
Sbjct: 801 SAVERGYFRSCFYRS----------YKDSESKRIG------DQEEQFEKPTRQTCQGM-- 842

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM----YSYWKESENRYVTCRY 861
                           A+ DKL  DG++  G +++  D +     +     ++   T R 
Sbjct: 843 --------------RNAMYDKLDDDGIITPGVRVSGDDVVIGKTITLPDTDDDLEGTTRR 888

Query: 862 SGKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICS 916
             K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C 
Sbjct: 889 FTKRDASTFLRNSETGCVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCG 948

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 949 IQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 983



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 109 PNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQKSFIGKIPIMLRSTYCLLSGLTDR 168

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 169 DLTELNECPLDPGGYFIINGSEKVL 193



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1019 EYGYHLRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1064


>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1277

 Score =  206 bits (525), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 232/889 (26%), Positives = 364/889 (40%), Gaps = 158/889 (17%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR---NHP 221
            +G VPIML+S  C L N T  +L E GE   + GGYF++ G EK+   LI N R   NH 
Sbjct: 243  LGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKV---LIANERMSTNHV 299

Query: 222  IAIKRN-----AWKNRGLLFSD----------LGVYIRSVKRDESATNNV---LHFV--- 260
               K+       W +    F D          L +Y +  +  +    ++   L ++   
Sbjct: 300  YCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTD 359

Query: 261  ------------TNGSA---RFMFSHRKSMCLLGMMQSLHE-EGIHTQHDSKVFFGQIFK 304
                        TN  A     ++    +  +     SL E + I  Q  ++ F G   K
Sbjct: 360  VPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIG---K 416

Query: 305  EKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLD 360
                 ++     +     +L    LPH+         K   L +M  KL     G ++ D
Sbjct: 417  RGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEED 476

Query: 361  SEDSIMLQEIMTGGSL----YLQLLKKEKSGTSAVLK-------ESDIYAAFRASSIESA 409
              D    + +   G+L    + QL +K        L+       +  +  A ++  I   
Sbjct: 477  DRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDG 536

Query: 410  MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSS 466
            +   LATGN    K +T      +G   +++ +NR+ Y   +SH R ++     +E + +
Sbjct: 537  LKYSLATGNWGDKKTAT-----KAG---VSQVLNRLTYASALSHLRRLNT-PLGREGKQA 587

Query: 467  EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL 526
            +PRQL    WGFICP  TP+G   GL+ +L     IS       L+ I   L    M  L
Sbjct: 588  KPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYIS---VGCSLSPILEFLEEWAMENL 644

Query: 527  TPVIQSIPEQA--LMVMLDGRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLK 582
              +   +  Q     V ++G  VG   D  ++  +LV + R L I  E        V + 
Sbjct: 645  DEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVE--------VSVV 696

Query: 583  RPEKGMGLYPGLYLFTGPGRMLRPVM-------------------------NL-AAGNIE 616
            R  KG      L L+T  GR+ RP+                          NL   G +E
Sbjct: 697  RDIKGR----ELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLMQQGVVE 752

Query: 617  WIGTFEQVFMDICITMKE-----AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMY 671
            +I T E+    + +  K+      Y    TH E+  +  L   A++IP PD NQSPRN Y
Sbjct: 753  YIDTEEEETTMVAMEPKDLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 812

Query: 672  QCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
            Q  MGKQ MG    N++ +     + L  P  P       + L     P G N IV ++ 
Sbjct: 813  QSAMGKQAMGIYASNYQLRMDTLAHVLHYPEKPLVTTRAMEHLHFRELPSGFNVIVGIMV 872

Query: 732  YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
            Y+GY+ ED++I+N+S+ +RG      F+++  + ++G             D +++ A+ F
Sbjct: 873  YSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKAGRGMG---------DMAVLSAESF 923

Query: 792  FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS---- 847
                          ++   ++  G    N    DKL  DGLV  G +++  D +      
Sbjct: 924  --------------ERPARENTAGMKHGNY---DKLEEDGLVAPGTRVSGTDVLIGKTTP 966

Query: 848  YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN---CAYIGYRIQ--RNPTVG 902
                         +  K++    +     G  +   +T N     +   RI+  R P +G
Sbjct: 967  LGGGVAGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKVRIRNVRVPQIG 1026

Query: 903  DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            DKFASR GQKG   + +  ED+P++  G+VPDI+ NPH  PSRMTI  L
Sbjct: 1027 DKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQL 1075



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP----ANKAL 823
            G+  +G E MYSG  G M+  ++F G   YQRL+H+V DK  ++    R P      + +
Sbjct: 1112 GFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHLVDDKIHSR---SRGPVMNLTRQPM 1168

Query: 824  EDKLGPDGLVYVGAKLNERDPMYSY 848
            E + G DG + +G    ERD + S+
Sbjct: 1169 EGR-GRDGGLRMGEM--ERDCLISH 1190


>gi|342185198|emb|CCC94681.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
          Length = 730

 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 152/530 (28%), Positives = 260/530 (49%), Gaps = 58/530 (10%)

Query: 464 RSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP---SKVLAQIPSVLVS 520
           RSSE R+   + +GF+C VH+PDG  CG+LNHL+ +   S   P   S+ ++ + S+   
Sbjct: 1   RSSEVRKYPCEGYGFLCMVHSPDGEDCGVLNHLSLSTVFSSSFPADSSQQMSLLASIQEE 60

Query: 521 LGMLPLTPVIQSIPEQ---ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIP---- 573
           L  +     + SI +Q    + V L+G+++GYI  + A  +   L   K++  +      
Sbjct: 61  LKDVRNFSSLASIVDQLIDTVPVWLEGKMIGYIEPKAAEGVARTLLRKKLIKSRSAVDAT 120

Query: 574 -----------KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------- 614
                       ++E++Y+    K     PGLY+F   GR++RPV+ + + +        
Sbjct: 121 GMVRRCKLGPLNTVEVIYIPPGSKDP---PGLYIFYSYGRLMRPVLQIVSESHDKDIPFP 177

Query: 615 IEWIGTFEQVFMDICITMKEAYPGIT----THRELSKTDF--LSNLANLIPMPDCNQSPR 668
           + ++GT+EQ + DI     +   G+     T+  + +T F  LS  ++ IP  + N SPR
Sbjct: 178 LVYLGTWEQTWKDIAAVPSDLLDGVQQLNRTYEFMEQTGFNILSLTSSTIPFFEHNCSPR 237

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           N++QC + KQT GT   +  ++   KL+++  P     R +  D   +D+  +G NA+VA
Sbjct: 238 NLFQCGLSKQTAGTQLQSMLWRKEAKLFQMYCPQRYISRTLPMDYYGLDDVSLGVNAVVA 297

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           ++++TGYD++DA+I+N ++ + G  + CI  +  I + SG        ++      +   
Sbjct: 298 ILAHTGYDLDDAIIVNSTASQLGMFNACITVAKVI-VASGTGERKDVFVFH---NRLPDG 353

Query: 789 QIFFGVVHYQRL-RHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER-DPMY 846
           + F   +  Q L R        +   F  D ++ +L D       V+  A+  ER DP+ 
Sbjct: 354 KPFVPELDAQGLPRKRAVPGAGSPLSFDTDHSHPSLRDS----SAVFCCARRFERVDPIT 409

Query: 847 SYWKESENRYVTCRY----SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
                   R+   R+     G++     +V ++    +     P      +RI R P +G
Sbjct: 410 RKKVYEYTRHHVTRWRHFDKGEDGWVANIVPLTYDGPD-----PTAVLFVFRIPRPPAIG 464

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTD-SGLVPDIVFNPHGFPSRMTIGFL 951
           DKF+SR GQKG   +   A DLPFT   G+ PD++ NPH FPSRMT+G +
Sbjct: 465 DKFSSRHGQKGTLPLNIRAYDLPFTSRDGISPDVIINPHAFPSRMTVGMV 514



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 2/56 (3%)

Query: 758 FKSMFIE-LES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           F  M  E LES GYN YG E +  GV G  ++A++F G+  YQRLRHMV+DKWQ +
Sbjct: 544 FAGMIGEALESLGYNRYGREKLIDGVSGEEIEAEVFMGISGYQRLRHMVNDKWQAR 599


>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Metaseiulus occidentalis]
          Length = 1178

 Score =  206 bits (524), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 195/706 (27%), Positives = 304/706 (43%), Gaps = 126/706 (17%)

Query: 315 NEVEICDYMLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI 370
           N ++    +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +
Sbjct: 332 NRIKYAREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKRL 391

Query: 371 MTGG--------SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNV 419
              G         L+  L K+ +      +   K+ ++  A +   I   +   LATGN 
Sbjct: 392 DLAGPLMAFLFRGLFKNLTKEVRMFAQKFIDKGKDFNLELAIKTRIITDGLKYSLATGNW 451

Query: 420 SAGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
              K +     QA   V  ++ +NR+ Y   +SH R V+     ++ + ++PRQL    W
Sbjct: 452 GDQKKA----HQARPGV--SQVLNRLTYASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLW 504

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE 535
           G ICP  TP+G   GL+ +L     IS    PS +L      L    M  L  +  S   
Sbjct: 505 GMICPAETPEGHAVGLVKNLALMSYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIA 560

Query: 536 QALMVMLDGRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG 593
           +A  + ++G  VG   D  Q+  +L    R + I+  ++    +I    R  +       
Sbjct: 561 EATKIFVNGCWVGIHRDPEQLMLTLQKLRRQMDIIVSEVSMVRDI----RDRE------- 609

Query: 594 LYLFTGPGRMLRPVMNL-----------------------------AAGNIEWIGTFEQV 624
           + ++T  GR+ RP++ +                             A+G +E+I T E+ 
Sbjct: 610 IRIYTDAGRICRPLLIVENQKLLLKRHHIDKLKERECSYYSWQDLVASGVVEYIDTLEEE 669

Query: 625 FMDICITMKE-------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
            + + +T  +       AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGK
Sbjct: 670 TVMLAMTPDDLTQDKALAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGK 729

Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
           Q MG    N+  +     + L  P  P       + L     P G NAIVA++SYTGY+ 
Sbjct: 730 QAMGVYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINAIVAIMSYTGYNQ 789

Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
           ED++ILN S+ +RGF     F+S+F       +Y  +E    G                 
Sbjct: 790 EDSVILNASAVDRGF-----FRSVFYR-----SYKDSENKRMG----------------- 822

Query: 798 QRLRHMVSDKWQTKDYFGRDPAN---KALEDKLGPDGLVYVGAKLNERDPM----YSYWK 850
                   D+ +T +   R+       A+ DKL  DG++  G +++  D +     +  +
Sbjct: 823 --------DQEETFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPE 874

Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKF 905
             ++   T +   K +    +    +G  +   +T N        I  R  R P +GDKF
Sbjct: 875 NDDDLDSTNKRYSKRDASTFLRNSETGIVDQVMLTINSDGYKFCKIRVRSVRIPQIGDKF 934

Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ASR GQKG C V +  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 935 ASRHGQKGTCGVTYRQEDMPFTVEGLTPDIIINPHAIPSRMTIGHL 980



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            I +E GY+  G E MY+G  G  + AQIF G  +YQRL+HMV DK  ++
Sbjct: 1013 ILMEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSR 1061



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 67/160 (41%), Gaps = 29/160 (18%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGK----------TLKLNIVKAAISEPKVPAGP 121
            + SFD  +   +   VED  PIE +                ++   +  +S+P      
Sbjct: 41  QLDSFDEFIQMSVQKIVEDTPPIELQAEATHSSGIIEQPTKYQVKFEQIYLSKP------ 94

Query: 122 VGIHFNK------YYPTEARQTRSVYSGPFNVTVAWS--WDGKAGGTFTKE---VGRVPI 170
              H+ K        P EAR     YS P  V +  +   DG+       +   +G++PI
Sbjct: 95  --THWEKDGAPTPMMPNEARLRNLTYSAPLYVDIIKTVIRDGEDPVETQHQKTFIGKIPI 152

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           ML+S  C L  L+   L E  E P + GGYFI+ G EK++
Sbjct: 153 MLRSSYCLLNGLSDRDLSELNECPLDPGGYFIINGSEKVL 192


>gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1217

 Score =  206 bits (524), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 197/711 (27%), Positives = 305/711 (42%), Gaps = 123/711 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 315 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 374

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +        +LKE  IYA              A +   I   +   LATGN    K 
Sbjct: 375 FLFR---GMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKK 431

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG +CP
Sbjct: 432 A----HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCP 484

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  +    A  +
Sbjct: 485 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 540

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  
Sbjct: 541 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 591

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + + +T
Sbjct: 592 GRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 651

Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
             +      AY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 652 PDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 711

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 712 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 771

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
           S+ +RGF     F+S+F      Y  Y  +    G D    Q +IF        Q +RH 
Sbjct: 772 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEIFEKPTRETCQGMRHA 816

Query: 804 VSDKWQTKDYF-------GRDP-ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN- 854
           + +K              G D    K +      D L     +  +RD   ++ + SE  
Sbjct: 817 IYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPENEDELDGTNRRYTKRD-CSTFLRTSETG 875

Query: 855 --------------RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT 900
                         ++   R S +  + +  +R S GF     ++ +C+ +  R  R P 
Sbjct: 876 IVDQVMVTLNQEGYKFCKIRVS-RRHLHLTRLRSSPGFKPSRMLSHSCS-LQVRSVRIPQ 933

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKFASR GQKG C +++  ED+PFT  G+ PDI+ NPH  PSRMT+G L
Sbjct: 934 IGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHL 984



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 29/160 (18%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLK----------LNIVKAAISEPKVPAGP 121
            + SFD  +   +   VED  PI+ +   +             L   +  +S+P      
Sbjct: 16  QLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKP------ 69

Query: 122 VGIHFNK------YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPI 170
              H+ +        P EAR     YS P  V +  +   +       +     +G++PI
Sbjct: 70  --THWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQIQTQHQKTFIGKIPI 127

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           ML+S  C L  LT   L E  E P + GGYFI+ G EK++
Sbjct: 128 MLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVL 167



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1060 EYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSR 1105


>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
          Length = 1175

 Score =  206 bits (524), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 194/694 (27%), Positives = 298/694 (42%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAH- 460

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 461 ---QARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 621

Query: 604 LRPVM-----NL------------------------AAGNIEWIGTFEQVFMDICITMKE 634
            RP++     NL                        A+G +E+I T E+  + I ++ ++
Sbjct: 622 CRPLLIVENGNLLLKKSHVDMLKDREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPED 681

Query: 635 -------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LRQDKENAYCNTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 742 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S+F       +Y  +E+   G                +++        
Sbjct: 802 VERGF-----FRSVFYR-----SYKDSESKRIGDQEE-----------QFEKPTRQTCQG 840

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
            +   Y           DKL  DG++  G +++  D +          E E    T RY+
Sbjct: 841 MRNAHY-----------DKLDDDGIISPGIRVSGDDVVIGKTIMLPENEDELEGTTKRYT 889

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 890 -KRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 948

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 949 QYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 982



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V    T+    D        K  +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIIKDGDDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLTELNECPLDPGGYFIINGSEKVL 194



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1018 EYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063


>gi|313237761|emb|CBY12898.1| unnamed protein product [Oikopleura dioica]
          Length = 1139

 Score =  206 bits (523), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 176/674 (26%), Positives = 297/674 (44%), Gaps = 151/674 (22%)

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLL----------------KKEKSGTSAVLKESDI 397
           +GM++ D  D    + I   G L   L                 KK +  T+ V+   D+
Sbjct: 331 RGMIKADDRDYYGNKRIQLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTAQVV---DV 387

Query: 398 YAAFRA--SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHF---- 451
            ++ ++  + I  AM   + TGN +  +      M   G   + E +NRM ++S      
Sbjct: 388 ISSMKSLQNKITLAMEAAIQTGNWNLKRFK----MDRKG---ITEILNRMSFISIILVGT 440

Query: 452 RAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVL 511
               +G + + M+ + PR L+   WG +CP  TP+G  CGL+ ++     ++ +   K  
Sbjct: 441 MTRIKGHFEKTMKVTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDK-- 498

Query: 512 AQIPSVLVSLGMLPLTPVI-QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
             I  +L++LG+   + +    +     +V L+G +VG   +    SL   +++++  G 
Sbjct: 499 -PIHRLLINLGVEETSTLSGYDLHGANYLVFLNGALVGATRN--PKSLTRTVQLIRRAG- 554

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN---------------- 614
           ++P+ +  VY+    +       +YL +  GR+ RP + +  G                 
Sbjct: 555 RLPEFVS-VYVSEEHRA------VYLASDGGRLTRPCIIVENGRPKVTQKHINALLEGRV 607

Query: 615 ----------IEWIGT---------------FEQVFMD---ICITMKEAYPG-------I 639
                     IE++                 F ++F +   I   +K AY         +
Sbjct: 608 KFPDFVKNGLIEYLDVNEENSALIDTTFFNYFRKIFFNQNLINRWLKRAYLNFKKVNNFL 667

Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
              +E+     L   A LIP PD NQSPRN YQC MGKQ MGT  +N R +    LY L 
Sbjct: 668 NCSKEIEPFALLGVCAGLIPYPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLV 727

Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
            P  P  +    + +  +  P G NA VAV+SY+GYD+EDA++LNK+S +RG+    +++
Sbjct: 728 YPQRPLVKTRTIELIGFEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYR 787

Query: 760 SMFIELESGYNYYGT--ETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +   +L+      GT  ET+   +DG  + A+        +++R                
Sbjct: 788 NEKTQLQR----RGTLVETIEERIDGPALDAK------SGEKIR---------------- 821

Query: 818 PANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSG 877
                 ++ L  DG+V  G ++ +R P                 +  + + +E V +S  
Sbjct: 822 -----ADECLDMDGIVAPGERVKDRAPT---------------MAKSQPIHIERVMISE- 860

Query: 878 FTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVF 937
                  T     + YR  R P +GDKF+SR GQKG+  +  P E++PF + G+ PD++ 
Sbjct: 861 -----DATWRMVKLSYRQTRRPELGDKFSSRHGQKGVTGLIVPQENMPFNEIGMCPDVIM 915

Query: 938 NPHGFPSRMTIGFL 951
           NPHG+PSRMT+G L
Sbjct: 916 NPHGYPSRMTVGKL 929



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 19/189 (10%)

Query: 73  IASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPT 132
           + SF+++L +GL   ++  A  + +   +    N     +  P V     G+      P 
Sbjct: 39  LDSFNYLLTQGLQKIIKANARTDVD---QNFFWNYDHIYVDPPDVE---YGMRSEAITPH 92

Query: 133 EARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGE 192
           E R     YS P  V V +  D +        +GR+PIML+S RC L N++  Q  +  E
Sbjct: 93  ECRLRDMTYSAPIKVDVTYVRDNQIRKARGLVIGRMPIMLRSARCVLANMSQEQFFKAKE 152

Query: 193 HPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD-LGVYIRSVKRDES 251
            P + GGYF+V G EK+            + ++  A  NR L+  D  G++   VK    
Sbjct: 153 CPLDPGGYFVVKGAEKV------------LLMQEQAVSNRILVEKDKTGMFCAVVKSKSD 200

Query: 252 ATNNVLHFV 260
             N   + +
Sbjct: 201 TANTQTNLI 209



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 13/91 (14%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY-----FGRDPA 819
            L+ G+NYYG + + SG  G  ++A IF G ++YQ+LRHMV DK   +         R P 
Sbjct: 963  LDYGFNYYGKDLLMSGETGEPLEAYIFMGPIYYQKLRHMVMDKMHARATGKVHNLTRQPL 1022

Query: 820  NKALED---KLGP---DGLVYVGAK--LNER 842
                +D   +LG    D L+  GA   LNER
Sbjct: 1023 EGRAKDGGLRLGEMERDALLAYGASNLLNER 1053


>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
          Length = 1185

 Score =  206 bits (523), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 188/707 (26%), Positives = 302/707 (42%), Gaps = 124/707 (17%)

Query: 315 NEVEICDYMLTNCILPHL---------DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
           N ++    +L   +LPH+           Y+  ++C   + C L     G  Q D  D  
Sbjct: 329 NRIQHAHDILIRELLPHIGITEESLTKKQYFLGYVCNRLLACSL-----GRRQPDDRDHY 383

Query: 366 MLQEIMTGGSL--------YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFL 414
             + +   G L        + +L+K+ +      L   KE ++  AF+   I   +   +
Sbjct: 384 GNKRVDMAGPLLAGLFKGCFKRLVKEFRKSLQDSLDNGKEVNMNTAFKQDFITKGIKYCM 443

Query: 415 ATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTD 474
           ATGN   GK +       +G   +   +     +SH R  +     +E + ++PRQL   
Sbjct: 444 ATGNWGVGKAAVAGQATRTGVSQVLSRLTFAAALSHLRRANT-PIGKEGKIAQPRQLHNT 502

Query: 475 AWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPL----TPVI 530
            WG +CP  TP+G  CGL+ +L+    +S    S+V+ ++   L + GM  L    +P I
Sbjct: 503 QWGVVCPAETPEGQACGLVKNLSLMTYVSVGGASQVIIEL---LQAGGMEELEELASPAI 559

Query: 531 QSIPEQALMVMLDGRIVGYIL--DQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGM 588
                +   V ++G  VG     D +A +L  + R + I G        +++     + +
Sbjct: 560 -CASSRFSKVFVNGVWVGMTDDPDNLANTLREQRREMTIGG--------MIHEVGVARDI 610

Query: 589 GLYPGLYLFTGPGRMLRPV---------MNLAAGNI---------EWIGTFEQVFMDICI 630
           G    L++ T  GR++RP+         +NL   NI          W     + F++   
Sbjct: 611 GERE-LFISTDYGRLMRPLLIVDKETGFLNLKRSNIIHMTQNEQTTWSEILRKGFIEYID 669

Query: 631 TMKEAYPGIT--------------THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
            M+E    I               TH E+     L   A++IP PD NQSPRN YQ  MG
Sbjct: 670 VMEEETCYIAMLVKDVGSNDLYQYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMG 729

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ MG    N++ +     + L  P  P  +    D L     P G N IVA+  Y+GY+
Sbjct: 730 KQAMGIYATNYQVRIDTLAHVLYYPQKPLVKTHSMDYLKFRELPAGQNLIVAIAVYSGYN 789

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
            ED++I+++SS +RG     +F+SMF      Y  Y  E    GV            +  
Sbjct: 790 QEDSLIMSQSSIDRG-----MFRSMF------YRSYTDEQKTEGV----------LCLEQ 828

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD------PMYSYWK 850
           +++ +         ++  G   +++   DKL  DGLV+    + +RD       + +   
Sbjct: 829 FEKPQ---------REELG-SASSRVNYDKLDVDGLVFPAQNVEDRDIIIGKTTLVTNSD 878

Query: 851 ESEN------RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDK 904
           +S+       R  + R    E   V+ V +++    G         I  R  R P +GDK
Sbjct: 879 DSDQAQIAVKRDSSTRLRHNEHGVVDQVLLTTNSDTGQRFVQ----IKVRAVRVPQIGDK 934

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           FASR GQKG   + +  +D+PFT  G+ PD++ NPH  PSRMTIG L
Sbjct: 935 FASRHGQKGTVGITYRQDDMPFTSEGVSPDLIVNPHAIPSRMTIGHL 981



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GY  +G E +Y+G  G  + A +FFG  +YQRL+HMV DK  ++        N+   +  
Sbjct: 1018 GYQRHGNERLYNGHTGRPLTALVFFGPTYYQRLKHMVDDKIHSRARGPTQMLNRQPMEGR 1077

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG +  G    ERD M ++
Sbjct: 1078 ARDGGLRFGEM--ERDCMIAH 1096



 Score = 44.7 bits (104), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 17/167 (10%)

Query: 62  NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGP 121
           NEF+L      I  +   ++    +A     P   + Y + ++++  +  I++P +    
Sbjct: 37  NEFILQNVQEVIEDYKGQIEV---IATPQYKPGTKQDYKQKIQVDFGRVRIAQPNITE-- 91

Query: 122 VGIHFNKYYPTEARQTRSVYSGPFNVTVAW-----SWDGKAGGTFTKE-----VGRVPIM 171
           V     +  P  AR  +  YS    V +       + DG        E     +G+VP+M
Sbjct: 92  VEGRKERLLPYMARLRKLTYSCQLFVDITLRKYKVASDGSEQLDNIDEHERVPLGKVPVM 151

Query: 172 LKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
           L+S+ C L       +++  E P + GGYF++ G EK+  LL   RR
Sbjct: 152 LRSEVCRLFGKYNKDIMDLKECPQDQGGYFVINGSEKV--LLAQERR 196


>gi|68131848|gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
          Length = 674

 Score =  206 bits (523), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 179/636 (28%), Positives = 278/636 (43%), Gaps = 112/636 (17%)

Query: 374 GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
           G L+ QL +K      A +       K+ ++  A +A +I S +   LATGN  A     
Sbjct: 24  GGLFRQLFRKLTRDVRAYVQKNVDQGKDLNLTFAIKAKTITSGLKYSLATGNWGAAN--- 80

Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
                A     +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG +CP  
Sbjct: 81  ----AAGTRAGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAE 135

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           TP+G  CGL+ +L     I+    +  + +      +     ++P +  IP QA  + ++
Sbjct: 136 TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAV--IP-QATKIFVN 192

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     LV  LR L+    ++  + E+  ++           L ++T  GR 
Sbjct: 193 GGWVGIHRD--PDLLVKTLRELR---RRVDVNTEVGVVRDIR-----LKELRIYTDYGRC 242

Query: 604 LRPVMNL------------------------------AAGNIEWIGTFEQVFMDICITM- 632
            RP+  +                              A G IE+I T E+    I +T+ 
Sbjct: 243 SRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTIN 302

Query: 633 ---------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
                    +E+Y G  TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  
Sbjct: 303 DLVSARLNPEESYSGTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 362

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
             N++++     Y L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+
Sbjct: 363 VTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 422

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           N+SS +RGF     F+S+F      +  Y  E    G                      +
Sbjct: 423 NQSSIDRGF-----FRSLF------FRSYRDEEKKMGT---------------------L 450

Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY---SYWKESENRYVTCR 860
           V + +   D            DKL  DGL   G +++  D +    +     E +    R
Sbjct: 451 VKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSPEEAQGPAAR 510

Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGIC 915
           YS K+   + +    SG  +   +T N     ++  R++  R P +GDKF+SR GQKG  
Sbjct: 511 YSRKDH-SISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 569

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            + +  ED+P+T  G+ PDI+ NPH  PSRMTIG L
Sbjct: 570 GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 605


>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
          Length = 1173

 Score =  206 bits (523), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 194/692 (28%), Positives = 296/692 (42%), Gaps = 116/692 (16%)

Query: 323 MLTNCILPH--LDDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH  + D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFRNLMKEVRLYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKA-- 459

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ Y   +SH R ++     ++ + ++PRQL    WG ICP  T
Sbjct: 460 --HQARAGV--SQVLNRLTYASTLSHLRRLN-SPIGRDGKLAKPRQLHNSLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPSAIANATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + +V   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMNTLRKLRRQMDIIVSEVSMVRDIRERE-------IRIYTDAGRI 621

Query: 604 LRPVMNL----------------------------AAGNIEWIGTFEQ------VFMDIC 629
            RP++ +                            A+G +E+I   E+      +F +  
Sbjct: 622 CRPLLIVENQKLLLKTRHIDQLKEDYNSYSWQDLVASGVVEYIDPLEEETIMLAMFPEDL 681

Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
               E Y    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+  
Sbjct: 682 QDKGEQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHV 741

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +     + L  P  P       + L     P G NAIVA+ +YTGY+ ED++I+NKSS +
Sbjct: 742 RMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAISTYTGYNQEDSIIVNKSSVD 801

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
           RGF     ++S + + E+   Y   ET +   + S               +RH       
Sbjct: 802 RGFFRSVFYRS-YKDAENKSAYDQEET-FERPERSFCTG-----------MRH------- 841

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGK 864
                       A+ DKL  DGLV  G +++  D +          E E    T R+  K
Sbjct: 842 ------------AIYDKLDDDGLVSPGIRVSGDDVVIGKTVMLPENEDELEGTTQRFK-K 888

Query: 865 EEMCVEVVRMSSGFTEGGSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
            ++   +    +G  +   ++ N        I  R  R P +GDKFASR GQKG C + +
Sbjct: 889 RDVSTFLRTSETGIVDQVMISINQDGYKFTKIRVRSVRVPQIGDKFASRHGQKGTCGITY 948

Query: 920 PAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            AED+PFT  G+ PD++ NPH  PSRMTIG L
Sbjct: 949 RAEDMPFTSEGVQPDLIVNPHAIPSRMTIGHL 980



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTV--------AWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V +        A   + +   TF   +G++PIML+S  C L  L
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVVKHEAQPVETQHQKTF---IGKIPIMLRSTYCLLSGL 166

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 167 TDRDLTELNECPLDPGGYFIINGSEKVL 194



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E +Y+G  G  +  Q+FFG  +YQRL+HMV DK  ++
Sbjct: 1016 EYGYQQRGNEVLYNGHTGRKLNTQVFFGPTYYQRLKHMVDDKIHSR 1061


>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
          Length = 1150

 Score =  206 bits (523), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 193/696 (27%), Positives = 296/696 (42%), Gaps = 122/696 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 317 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 376

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 377 FLFRGLFKTLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH- 435

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 436 ---QARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 489

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 490 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 545

Query: 544 GRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           G  VG   D  Q+ T+L    R + I+  ++    +I    R  +       + ++T  G
Sbjct: 546 GCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMIRDI----RDRE-------IRIYTDAG 594

Query: 602 RMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICITM 632
           R+ RP++ +                             A+G +E+I T E+  + I +  
Sbjct: 595 RICRPLLIVENGKLLLKKRHIDMLKDREYNNYGWQVLVASGVVEYIDTLEEETVMIAMMT 654

Query: 633 KE-------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           ++       AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 655 EDMKHEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 714

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P       + L     P G N++VA++ YTGY+ ED++I+N 
Sbjct: 715 NYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNA 774

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           S+ ERGF     F+S          Y   E+   G        +  F     Q  + M  
Sbjct: 775 SAVERGFFRSVFFRS----------YKDAESKRIG------DQEEQFEKPTRQTCQGM-- 816

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCR 860
                           AL DKL  DG++  G +++  D +          E E    T R
Sbjct: 817 --------------RNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNEDELEGTTKR 862

Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGIC 915
           ++ K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C
Sbjct: 863 FT-KRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC 921

Query: 916 SVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            +++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 922 GIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 957



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWS--------WDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V +  +         + +   TF   +G++PIML+S  C L  L
Sbjct: 85  PNEARLRNLTYSAPLYVDITKTIIKDGDEPMESQHQKTF---IGKIPIMLRSTYCLLNGL 141

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 142 TDRDLTELNECPLDPGGYFIINGSEKVL 169



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQIF G  +YQRL+HMV DK  ++
Sbjct: 993  EYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSR 1038


>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
          Length = 1174

 Score =  205 bits (522), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 192/694 (27%), Positives = 297/694 (42%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 340 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 399

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 400 FLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH- 458

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 459 ---QARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 512

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 513 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 568

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 569 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 619

Query: 604 LRPVMN-----------------------------LAAGNIEWIGTFEQVFMDICITMKE 634
            RP++                              +A+G +E+I T E+  + I ++  +
Sbjct: 620 CRPLLIVDNGILLLKKRHIDMLKERDLNNYSWQVLVASGVVEYIDTLEEETVMIAMSPDD 679

Query: 635 -------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 680 LRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 739

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 740 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 799

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S+F       +Y  +E+   G                         ++
Sbjct: 800 VERGF-----FRSVFYR-----SYKDSESKRIGDQ----------------------EEQ 827

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
           ++            AL DKL  DG++  G +++  D +          + E    T RY+
Sbjct: 828 FEKPTRTTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDGTTKRYT 887

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 888 -KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 946

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 947 QYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 980



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1016 EYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1061



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  L   
Sbjct: 108 PNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLIDR 167

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 168 DLTELNECPLDPGGYFIINGSEKVL 192


>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
          Length = 1266

 Score =  205 bits (522), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 236/946 (24%), Positives = 366/946 (38%), Gaps = 232/946 (24%)

Query: 165  VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAI 224
            +GR+PIM+KSK CHL       L    E P + GGYFI+ G EK+   LI   R+    +
Sbjct: 194  MGRLPIMVKSKICHLAYEDEDGLFLLNECPYDQGGYFIINGSEKV---LIAQERSAANIV 250

Query: 225  K----------------RNAWKNRGLLFSDLGV----------------------YIRS- 245
            +                R+A +    L S L +                      YI+S 
Sbjct: 251  QVFKKAQPSKFSYTAEIRSALEKGSRLISSLSIMLVAKGDTGRGSFGQTVHTTLPYIKSE 310

Query: 246  -----------VKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHD 294
                       V  DE   N++ +             R    +L M++   EE    Q D
Sbjct: 311  LPIAVVFRALGVVSDEDILNHICY------------DRNDSQMLEMLRPCIEEAFCIQ-D 357

Query: 295  SKVFFGQIFKE-KLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKL 349
             +V    I K  +  + +   + V     +L   +LPH+         K   L +M  KL
Sbjct: 358  REVALDFIGKRGQNSHGISRKDRVRAARDILQKEMLPHISQSEGCETRKAFFLGYMVHKL 417

Query: 350  FHVVQGMVQLDSEDSIMLQEIMTGGSL------------YLQLLKKEKSGTSAVLKESDI 397
                 G   +D  D    + +   GSL            Y +L+   K       K  D+
Sbjct: 418  LQCALGRRDVDDRDHFGKKRLDLAGSLLAKLFRGIIRKMYQELMNHLKRCVDTG-KHFDL 476

Query: 398  YAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAV 454
                R  ++ + +   LATGN    K +    M ++  V  ++ +NR  +   +SH R  
Sbjct: 477  RVGIRHQTLTNGLKYSLATGNWGDQKKA----MSSTAGV--SQVLNRYTFSSTLSHLRRT 530

Query: 455  HRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
            +     ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+  C +S   P++ + + 
Sbjct: 531  N-TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEF 589

Query: 515  PSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKIP 573
               +++  M  L          A  + ++G  VG   D +   SLV  LR   ++  ++ 
Sbjct: 590  ---MIARNMEVLEEYEPLRYPNATKIFVNGSWVGVHQDPKHLVSLVQGLRRKGVIQSEVS 646

Query: 574  KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLA---------------------- 611
               +I   +             +F+  GR++RP+  +                       
Sbjct: 647  LVRDIRDRE-----------FKIFSDAGRVMRPLFAIEQEDNADSGVEKGMLVLTKEHVQ 695

Query: 612  -----------------------AGNIEWIGTFEQVFMDICIT--------MKEA---YP 637
                                   AG IE++   E+    IC+T        M++A    P
Sbjct: 696  RLDADEGLSKDDPKYFGWDGICDAGAIEYLDAEEEETAMICMTPEDLDNYRMQKAGYVLP 755

Query: 638  GIT--------------------THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
              T                    TH E+  +  L   A++IP PD NQSPRN YQ  MGK
Sbjct: 756  DETNDEDINKRVKTKMNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAMGK 815

Query: 678  QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
            Q MG    N+  +       L  P  P       + L     P G NAIVA++ Y+GY+ 
Sbjct: 816  QAMGFFLTNYPRRMDTMANVLYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQ 875

Query: 738  EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
            ED++I+N+SS +RG     +F+S+F      +  Y       G++      + F      
Sbjct: 876  EDSVIMNQSSIDRG-----LFRSLF------FRAYTDSEKRVGINFVETFEKPFRS--DT 922

Query: 798  QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWK 850
             RL+H                      DKL  DG+V  G +++  D       P+    +
Sbjct: 923  LRLKH-------------------GTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDHQ 963

Query: 851  ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKF 905
            E   R    +   K +    +    SG  +   VT N   + Y     R  + P +GDKF
Sbjct: 964  EMGQR---TQAHVKRDASTPLRSTESGIIDQVVVTTNQDNLRYVKVRVRTTKIPQIGDKF 1020

Query: 906  ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            ASR GQKG   V + +ED+PFT  G++PDI+ NPH  PSRMTI  L
Sbjct: 1021 ASRHGQKGTIGVTYRSEDMPFTTEGILPDIIINPHAIPSRMTIAHL 1066



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY G  G  ++AQ+FFG  +YQRLRHMV DK   +
Sbjct: 1101 EHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHAR 1146


>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
          Length = 1175

 Score =  205 bits (522), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 191/694 (27%), Positives = 294/694 (42%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN   G     
Sbjct: 402 FLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN--WGDQKKA 459

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
            L +A     +++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 460 HLARAG----VSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 621

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFM-------D 627
            RP++ +                             A+G +E+I T E+  +       D
Sbjct: 622 CRPLLIVEGGTLLLKKRHVDMLKEKEYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPED 681

Query: 628 ICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           + +  + AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LRVDKEYAYCQTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++I+N S+
Sbjct: 742 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S          Y   E+   G        +  F     Q  + M    
Sbjct: 802 VERGFFRSVFFRS----------YKDAESKRIG------DQEEQFEKPTRQTCQGM---- 841

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
                         AL DKL  DG++  G +++  D +          + E    T R++
Sbjct: 842 ------------RNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNDDELEGTTKRFT 889

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 890 -KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 948

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 949 QYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 982



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPF--NVTVAWSWDG------KAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P   ++T     DG      +   TF   +G++PIML+S  C L  L
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTF---IGKIPIMLRSTYCLLSGL 166

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 167 TDRDLTELNECPLDPGGYFIINGSEKVL 194



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQIF G  +YQRL+HMV DK  ++
Sbjct: 1018 EYGYQLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSR 1063


>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
          Length = 1175

 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 192/694 (27%), Positives = 295/694 (42%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFKTLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH- 460

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
             M  +G   +++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 461 --MARAG---VSQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNSLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 621

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICITMKE 634
            RP++ +                             A+G +E+I T E+  + I ++  +
Sbjct: 622 CRPLLIVEGGSLLLKKKHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDD 681

Query: 635 -------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 742 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S          Y   E+   G        +  F     Q  + M    
Sbjct: 802 VERGFFRSVFFRS----------YKDAESKRIG------DQEEQFEKPTRQTCQGM---- 841

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
                         AL DKL  DG++  G +++  D +          E E    T R++
Sbjct: 842 ------------RNALYDKLDDDGIISPGIRVSGDDVVIGKTIMLPETEDELEGTTKRFT 889

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 890 -KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 948

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 949 QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 982



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  + + +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIEKEGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLTELNECPLDPGGYFIINGSEKVL 194



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1018 EYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063


>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
 gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
          Length = 1175

 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 196/694 (28%), Positives = 303/694 (43%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA-- 459

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 460 --HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 621

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT--- 631
            RP++ +                             A+G +E+I T E+  + I +T   
Sbjct: 622 CRPLLIVENGSLLLRKNHIDMLKDRDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYD 681

Query: 632 MKE----AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           +K+    AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 742 HVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S+F       +Y  +E+   G        +  F   + Q  + M    
Sbjct: 802 VERGF-----FRSVFYR-----SYKDSESKRIG------DQEEQFEKPNRQTCQGM---- 841

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS---YWKESENRY--VTCRYS 862
                         AL DKL  DG++  G +++  D +        E+++     T RY+
Sbjct: 842 ------------RNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTKRYT 889

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 890 -KRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 948

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 949 QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 982



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWS--------WDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V +  +         + +   TF   +G++PIML+S  C L  L
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTKLVEGQDPVETQHQKTF---IGKIPIMLRSTYCLLSQL 166

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 167 TDRDLTELNECPLDPGGYFIINGSEKVL 194



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            S F++ E GY+  G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1013 STFLQ-EYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063


>gi|167043846|gb|ABZ08535.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
           crenarchaeote HF4000_APKG3E18]
          Length = 960

 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 184/683 (26%), Positives = 309/683 (45%), Gaps = 94/683 (13%)

Query: 316 EVEICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
           +++  + +L   +LPHL    ++  +K   L    CKL  +  G +Q D +D    + + 
Sbjct: 284 QIKRAETLLDWGLLPHLGKQPENRKEKVQFLGEAACKLLELKLGWIQPDDKDHYGNKVVK 343

Query: 372 TGGSLYLQLLKK-------------EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGN 418
             G +   L +              E+SG    +  + + AA R   I   + N +ATGN
Sbjct: 344 FAGQMLADLFRTAFRNLVRDMKYQLERSGQKRGI--NAVSAAIRPGIISDKLNNAIATGN 401

Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
              G+    QL+         +  N +  +SH R V +    +   + E R L +  +G 
Sbjct: 402 WGRGRVGVTQLL---------DRTNYLSTLSHLRRV-QSPLSRTQPNFEARDLHSTHFGR 451

Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL 538
           ICP  TP+G+ CGL+ +L  +  IS  +PS+   +I   +  LG    T V  S+ +   
Sbjct: 452 ICPSETPEGSNCGLVKNLALSAIISVSVPSE---EIVEKMYELGTDYFTDVKDSVKKDGT 508

Query: 539 MVMLDGRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYL 596
            + +DG+++GY  D  ++A+SL  +LR    +   +  S+ I     PE+  G    LY+
Sbjct: 509 RIFVDGKLIGYHKDGEKLASSL-RELRRTNKIHRHVGISIHI-----PEQ-EGATKRLYV 561

Query: 597 FTGPGRMLRPVMNLAAGN---------------IEW-----IGTFEQVFMD----ICITM 632
               GR+LR ++ +  G                + W     +G  E +  +      IT 
Sbjct: 562 NCNAGRVLRSLIIVKDGKSALTPDLLDKISKKLVSWEDLIRMGVIELIDANEEENCFITF 621

Query: 633 KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG--TPCLNWRYQ 690
            + +    TH E+  +  L   A++IP P+ NQSPRN Y+  M KQ++G  TP +N    
Sbjct: 622 DDKHIKKHTHTEIFPSAILGAGASIIPYPEHNQSPRNTYESAMAKQSLGFSTPMMNT--S 679

Query: 691 GVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYER 750
              + + +  P +        + L ++  P G N +VAV+ + GY++EDA++L+KSS ER
Sbjct: 680 TYVRQHFMLYPQTSIVTTRAMELLGLEKRPAGQNCVVAVLPFDGYNIEDAIVLSKSSVER 739

Query: 751 GFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH--MVSDKW 808
           G      ++    E ES     G    +  +  S    + + G   Y+ L    +++ + 
Sbjct: 740 GLGRTLFYR--IYEAESKQYPGGMRDNFE-IPNSDDNLRGYKGEKSYRLLEEDGIIASE- 795

Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMC 868
                  R      L  K  P   +    +L+   P   Y +++    +  R S  E   
Sbjct: 796 ------SRVTGGDILIGKTSPPRFMEEYRELDSSGP---YRRDTS---IGVRPS--ETGV 841

Query: 869 VEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
           V+ + ++    EGG +      +  R  R+P +GDKFASR GQKG+  +   AEDLP+T 
Sbjct: 842 VDTIILTQS-AEGGKMFK----VRIRDFRSPEIGDKFASRHGQKGVVGLLAKAEDLPYTA 896

Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
            G+ PD++ NPH FPSRMT+G +
Sbjct: 897 EGVSPDVLINPHAFPSRMTVGMM 919



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ SFD  L +GL   + +I  I+ E      ++ + +    +P++    +        P
Sbjct: 25  HLTSFDEFLTKGLQEIINEIDHIDIENAEYPYRIKLGRIQFKQPRMME--LDGSVTHITP 82

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y  P  +  +   DGK   +    +G +P+M+KS  C LR+ T  +LI+  
Sbjct: 83  AEARLRNVSYVAPLMMEASVIEDGKTLESRFLHIGDIPVMVKSDGCILRSFTNQKLIDHA 142

Query: 192 EHPDEWGGYFIVGGHEKLV 210
           E P++ GGYFI+ G E+++
Sbjct: 143 EDPEDPGGYFIINGSERVI 161


>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
          Length = 1176

 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 199/697 (28%), Positives = 300/697 (43%), Gaps = 124/697 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G L  
Sbjct: 343 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMA 402

Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
            L +       +++KE  +YA              A +   I   +   LATGN    K 
Sbjct: 403 LLFR---GLFKSLVKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 459

Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           +     QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP
Sbjct: 460 A----HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICP 512

Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
             TP+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  +
Sbjct: 513 AETPEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKI 568

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            ++G  VG   D     L   LR L+   + I   + ++   R  +       + ++T  
Sbjct: 569 FVNGCWVGIHRD--PEQLTATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDA 619

Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
           GR+ RP++ +                             A+G +E+I T E+  + I +T
Sbjct: 620 GRICRPLLIVENGSLLLRKNHVDMLKDRDYNNYGWQVLVASGVVEYIDTLEEETVMIAMT 679

Query: 632 ---MKE----AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
              +K+    AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG   
Sbjct: 680 PYDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 739

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
            N+  +     + L  P  P       + L     P G N IVA++ YTGY+ ED++ILN
Sbjct: 740 TNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINTIVAILCYTGYNQEDSVILN 799

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            S+ ERGF     F+S+F       +Y  +E+   G        +  F   + Q  + M 
Sbjct: 800 ASAVERGF-----FRSVFYR-----SYKDSESKKIG------DQEEQFEKPNRQTCQGM- 842

Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS---YWKESENRY--VTC 859
                            AL DKL  DG++  G +++  D +        E+++     T 
Sbjct: 843 ---------------RNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTK 887

Query: 860 RYSGKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGI 914
           RY+ K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG 
Sbjct: 888 RYT-KRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 946

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           C +++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 947 CGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 983



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWS--------WDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V +  +         + +   TF   +G++PIML+S  C L  L
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTF---IGKIPIMLRSTYCLLSQL 167

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 168 TDRDLTELNECPLDPGGYFIINGSEKVL 195



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            S F++ E GY   G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1014 STFLQ-EYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1064


>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
          Length = 1176

 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 192/694 (27%), Positives = 295/694 (42%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA-- 459

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 460 --HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 621

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICITMKE 634
            RP++ +                             A+G +E+I T E+  + I ++ ++
Sbjct: 622 CRPLLIVENGSLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPED 681

Query: 635 -------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++I+N S+
Sbjct: 742 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S          Y   E+   G        +  F     Q  + M    
Sbjct: 802 VERGFFRSVFFRS----------YKDAESKRIG------DQEEQFEKPTRQTCQGM---- 841

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
                         AL DKL  DG++  G +++  D +          + E    T R++
Sbjct: 842 ------------RNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELEGTTKRFT 889

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 890 -KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 948

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 949 QYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 982



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPF--NVTVAWSWDGKAGGTFTKE---VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P   ++T     DG+       +   +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLTELNECPLDPGGYFIINGSEKVL 194



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  + AQIF G  +YQRL+HMV DK  ++
Sbjct: 1018 EYGYHLRGNEVMYNGHTGRKISAQIFLGPTYYQRLKHMVDDKIHSR 1063


>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
          Length = 1921

 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 180/610 (29%), Positives = 268/610 (43%), Gaps = 107/610 (17%)

Query: 393  KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
            K+ ++  A R+  I   +   LATGN    K +     QA   V  ++ +NR+ +   +S
Sbjct: 1170 KDFNLELAIRSQIITDGLKYSLATGNWGDQKKAN----QARPGV--SQVLNRLTFASTLS 1223

Query: 450  HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPS 508
            H R ++     ++ + + PRQL    WG ICP  TP+G+  GL+ +L     IS    PS
Sbjct: 1224 HLRRLN-SPIGRDGKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLALMAYISVGSQPS 1282

Query: 509  KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
             +L      L    M  L  +  S   +   + ++G  VG  +      L+  LR L+  
Sbjct: 1283 PIL----EFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVG--IHNSPDHLMVTLRKLRRQ 1336

Query: 569  GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------------- 614
             + I   + +V   R ++       + ++T  GR+ RP++ +  G               
Sbjct: 1337 VDVIVSEVSMVRDYRDQE-------IRIYTDAGRICRPLVIVEKGKLLLKRSHIEFLKDK 1389

Query: 615  ---------------IEWIGTFEQVFMDICITMKEA-----YPGITTHRELSKTDFLSNL 654
                           +E+I T E+  + I +   E      Y    TH E+  +  L   
Sbjct: 1390 AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVHYCKTHTHCEIHPSMILGIC 1449

Query: 655  ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
            A++IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P  P       + L
Sbjct: 1450 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYL 1509

Query: 715  DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
                 P G NAIVA+ +YTGY+ ED++ILN+S+ +RGF     F+S F      Y  Y  
Sbjct: 1510 RFRELPAGINAIVAIATYTGYNQEDSVILNESAIQRGF-----FRSEF------YRTYKD 1558

Query: 775  ETMYSGVDGSMMQAQIFF--GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
            +    G+D    Q ++F        Q +RH                   A+ DKL  DGL
Sbjct: 1559 QEARHGMD----QEEVFEKPNPQQCQGMRH-------------------AIYDKLDDDGL 1595

Query: 833  VYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            +  G +++  D +          E E      RY+ K +  V + R   G  +   +T N
Sbjct: 1596 IAPGTRVSGDDVLIGKTITLPENEDEMEGGQRRYT-KRDASVFMRRSEYGIVDQVMITWN 1654

Query: 888  ------CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                  C  +  R  + P VGDKFASR GQKG C +++  ED+PFT  G+ PDI+ NPH 
Sbjct: 1655 NEGNKFCK-VRVRTTKTPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 1713

Query: 942  FPSRMTIGFL 951
             PSRMTIG L
Sbjct: 1714 IPSRMTIGHL 1723



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY + G E MY+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1759 EYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSR 1804



 Score = 49.3 bits (116), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSW---DGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPAQ 186
           P +AR     Y+ P  V V       DG+      K+ +G++PIML+S  C L  ++   
Sbjct: 872 PNDARLRNLTYAAPLYVDVMKKIIRDDGEEEKPLEKKFIGKIPIMLRSTYCLLSIMSDRD 931

Query: 187 LIERGEHPDEWGGYFIVGGHEKLV 210
           L E  E P + GGYFI+ G EK++
Sbjct: 932 LAELNECPLDPGGYFIINGSEKVL 955


>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
 gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
          Length = 1104

 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 199/721 (27%), Positives = 299/721 (41%), Gaps = 151/721 (20%)

Query: 323  MLTNCILPH--LDDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
            +L   +LPH  + DY +  K   L ++  +L     G  +LD  D    + +   G L  
Sbjct: 344  ILQKEMLPHVGISDYCETKKAYFLGYIVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 403

Query: 379  QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
             L +        + KE  IYA              A +   I   +   LATGN    K 
Sbjct: 404  YLFR---GLFKNLTKEVRIYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKK 460

Query: 425  STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
            +     QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG ICP
Sbjct: 461  A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNSLWGMICP 513

Query: 482  VHTPDGTPCGLLNHLT------------------TNCQISEYI-----PSKVLAQIPSVL 518
              TP+G   GL+ +L                    N  +  YI     PS +L      L
Sbjct: 514  AETPEGQAVGLVKNLALMAYISMVHDNGQAVGLVKNLALMAYISVGSQPSPIL----EFL 569

Query: 519  VSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSL 576
                M  L  V  S    A  + ++G  VG   D  Q+  +L    R + I+  ++    
Sbjct: 570  EEWSMENLEEVAPSAIANATKIFVNGCWVGVHRDPEQLMNTLKKLRRQMDIIVSEVSMVR 629

Query: 577  EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL-------------------------- 610
            +I   +           + +FT  GR+ RP++ +                          
Sbjct: 630  DIRERE-----------IRIFTDAGRICRPLLIVEKQKLLLKKHHVDMLKEREYNNYSWQ 678

Query: 611  ---AAGNIEWIGTFEQVFMDICITMKE------AYPGITTHRELSKTDFLSNLANLIPMP 661
               A G +E+I T E+  + + +T  +      AY    TH E+  +  L   A++IP P
Sbjct: 679  DLVAGGVVEYIDTLEEETVMLAMTPDDLQDKGVAYCSTYTHCEIHPSMILGVCASIIPFP 738

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
            D NQSPRN YQ  MGKQ MG    N+  +     + L  P  P       + L     P 
Sbjct: 739  DHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPA 798

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
            G NAIVA+ SYTGY+ ED++I+N S+ +RG     +F+S+F      Y  Y       G+
Sbjct: 799  GINAIVAIASYTGYNQEDSVIMNASAIDRG-----LFRSVF------YRSYKESESKKGL 847

Query: 782  DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
            D    Q +IF              +K    +  G      A+ DKL  DG++  G +++ 
Sbjct: 848  D----QEEIF--------------EKPTRDEVTG---MRNAIYDKLDDDGIIAPGVRVSG 886

Query: 842  RDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN------CAY 890
             D +          E E    T R++ K +    +    +G  +   V+ N      C  
Sbjct: 887  EDVIIGKTVTLPENEDELESTTKRFT-KRDSSTFLRSSETGIVDQVMVSINQEGYKFCK- 944

Query: 891  IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
            +  R  R P +GDKFASR GQKG C + +  ED+PFT  G+ PDI+ NPH  PSRMTIG 
Sbjct: 945  VRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTAEGISPDIIINPHAVPSRMTIGH 1004

Query: 951  L 951
            L
Sbjct: 1005 L 1005



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 29/160 (18%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLK----------LNIVKAAISEPKVPAGP 121
            + SFD  +   +   VED   I+ +   + L           LN  +  +S+P      
Sbjct: 45  QLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLTMEAEVPPRYLLNFEQIYLSKP------ 98

Query: 122 VGIHFNK------YYPTEARQTRSVYSGPF--NVTVAWSWDGKAGGTFTKE---VGRVPI 170
              H+ K        P EAR     YS P   ++T     DG+       +   +G++PI
Sbjct: 99  --THWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEERIETQHQKTFIGKIPI 156

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           ML+S  C L  LT   L E  E P + GGYFI+ G EK++
Sbjct: 157 MLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVL 196



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  +  Q+F G  +YQRL+HMV DK  ++
Sbjct: 1041 EYGYHLRGNEVVYNGFTGRKLSTQLFIGPTYYQRLKHMVDDKIHSR 1086


>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
          Length = 875

 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 239/938 (25%), Positives = 376/938 (40%), Gaps = 193/938 (20%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V         DG+       FTK  +G+VPIML+S  C L 
Sbjct: 6   FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 65

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKL----------------------------VRL 212
           + +   L E GE P + GGYFI+ G EK+                            VR 
Sbjct: 66  HNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRS 125

Query: 213 LINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVK---RDESATNNVLHFVTNGSARFMF 269
           +  N+   P  +        G      G YIR+     R E     V   +   + + + 
Sbjct: 126 MAENQNRPPSTMFVRMLSRAGAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDIL 185

Query: 270 SHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDY 322
            H   +C       ++ +++   EE    Q + +V    I K      +     ++    
Sbjct: 186 EH---ICYDFSDTQMMELLRPSLEEAFVIQ-NQQVALDYIGKRGATVGVTKEKRIKYARE 241

Query: 323 MLTNCILPHLD--DYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI-MTG---G 374
           +L   +LPH+   +Y +  K     ++  +L     G    D  D    + + + G   G
Sbjct: 242 ILQKEMLPHVGVGEYCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLG 301

Query: 375 SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
            L+  L +K        +       K+ ++  A +A +I S +   LATGN         
Sbjct: 302 GLFRMLFRKLTRDVRGYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWG------- 354

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
           Q   A     +++ +NR+ Y   +SH R ++  +  +E + ++PRQL    WG +CP  T
Sbjct: 355 QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPT-GREGKLAKPRQLHNSQWGMMCPAET 413

Query: 485 PDGTPCGLLNHLTTNCQI---SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVM 541
           P+G  CGL+ +L     I   S   P  +L  +           ++P +  IP QA  + 
Sbjct: 414 PEGQACGLVKNLALMVYITVGSAAYP--ILEFLEEWSTENFEEEISPAV--IP-QAAKIF 468

Query: 542 LDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEI-----VYLKRPEKGMGLYPGLYL 596
           ++G  VG   D     LV  LR L+    ++  + E+     ++LK           L +
Sbjct: 469 VNGCWVGIHRD--PDLLVKTLRQLR---RRVDVNTEVGVVRDIHLKE----------LRI 513

Query: 597 FTGPGRMLRPVMNL------------------------------AAGNIEWIGTFEQVFM 626
           +T  GR  RP+  +                              A G IE+I T E+   
Sbjct: 514 YTDYGRCSRPLFIVDKQRLLIKKRDIRALQLRETPEDGGWHDLVAKGFIEYIDTEEEETT 573

Query: 627 DICITM----------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
            I +T+          +EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MG
Sbjct: 574 MISMTINDLITARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 633

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ MG    N++++     Y L  P  P       + L     P G NAIVA+  Y+GY+
Sbjct: 634 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 693

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVH 796
            ED++I+N+SS +RGF     F+S+F      +  Y  E    G                
Sbjct: 694 QEDSVIMNQSSIDRGF-----FRSLF------FRSYRDEEKKMGT--------------- 727

Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD-------PMYSYW 849
                 +V + +   D            DKL  DGL   G K++  D       P+    
Sbjct: 728 ------LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTKVSGEDVIIGKTTPLAPDE 781

Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDK 904
            +  N     RY+ + +  + +    +G  +   +T N     ++  R++  R P +GDK
Sbjct: 782 AQGPN---AARYT-RRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 837

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
           F+SR GQKG   + +  ED+P+T  G+ PDI+ NPH  
Sbjct: 838 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 875


>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
          Length = 1175

 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 190/694 (27%), Positives = 297/694 (42%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFKNLMKEVRLYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKA-- 459

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R ++     ++ + ++PRQL    WG ICP  T
Sbjct: 460 --HQARAGV--SQVLNRLTFASTLSHLRRIN-SPIGRDGKLAKPRQLHNTLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDSGRI 621

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICITMKE 634
            RP++ +                             A+G +E+I T E+  + I ++ ++
Sbjct: 622 CRPLLIVENGKLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPED 681

Query: 635 -------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LRHEKEYAYCTTHTHCEIHAAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 742 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S+F       +Y  +E+   G                +++        
Sbjct: 802 VERGF-----FRSVFYR-----SYKDSESKRIGDQEE-----------QFEKPTRQTCQG 840

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
            +   Y           DKL  DG++  G +++  D +          E E    T R++
Sbjct: 841 MRNAHY-----------DKLDDDGIISPGIRVSGDDVVIGKTITLPENEDELEGTTKRFT 889

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 890 -KRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 948

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PFT  GL PDI+ NPH  PSRMTIG L
Sbjct: 949 QYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHL 982



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +   +       +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLTELNECPLDPGGYFIINGSEKVL 194



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  + AQIF G  +YQRL+HMV DK  ++
Sbjct: 1018 EYGYHLRGNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSR 1063


>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
          Length = 1954

 Score =  204 bits (518), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 193/693 (27%), Positives = 301/693 (43%), Gaps = 116/693 (16%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA-- 459

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG ICP  T
Sbjct: 460 --HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 621

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT--- 631
            RP++ +                             A+G +E+I T E+  + I +T   
Sbjct: 622 CRPLLIVEGGSLLLRKHHIDMLKDRDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYD 681

Query: 632 MKE----AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
           +K+    AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 742 HVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S+F       +Y  +E+   G        +  F   + Q  + M    
Sbjct: 802 VERGF-----FRSVFYR-----SYKDSESKRIG------DQEEQFEKPNRQTCQGM---- 841

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM----YSYWKESENRYVTCRYSG 863
                         AL DKL  DG++  G +++  D +     +  +  ++   T +   
Sbjct: 842 ------------RNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTKRFT 889

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
           K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C ++
Sbjct: 890 KRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ 949

Query: 919 WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 950 YRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 982



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 760  SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            S F++ E GY+  G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1013 STFLQ-EYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 131 PTEARQTRSVYSGPFNVTVAWS--------WDGKAGGTFTKEVGRVPIMLKSKRCHLRNL 182
           P EAR     YS P  V +  +         + +   TF   +G++PIML+S  C L  L
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTF---IGKIPIMLRSTYCLLSQL 166

Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           T   L E  E P + GGYFI+ G EK++
Sbjct: 167 TDRDLTELNECPLDPGGYFIINGSEKVL 194


>gi|397576311|gb|EJK50184.1| hypothetical protein THAOC_30880 [Thalassiosira oceanica]
          Length = 1299

 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 240/940 (25%), Positives = 383/940 (40%), Gaps = 173/940 (18%)

Query: 137  TRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPAQLIERG 191
            T + Y  P +  VA   +       T+E     +G VPIML+S  C L +   AQL + G
Sbjct: 168  TMNEYRVPSDANVADPAEEMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLG 227

Query: 192  EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR-----------------NAWKNRGL 234
            E   + GGYF+V G EK++        NH  A ++                 N+ +    
Sbjct: 228  ECIYDQGGYFVVNGSEKVIVAQERMSNNHVYAFRKKQPSKFSWVIETRSQVENSTRPTST 287

Query: 235  LFSDL----------GVYIRSV-------------------KRDESATNNVLHFVTNGSA 265
            L+  +          G  IRS                      D     +V++ +T+G  
Sbjct: 288  LYIQMYQKGGKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEM 347

Query: 266  RFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLT 325
              +F             SL E  +  + +  + F  I +     D+   + +     +L 
Sbjct: 348  MDLFR-----------PSLEESFVIQKQEVALDF--IGRRGSARDVTKDDRIRYAAGILQ 394

Query: 326  NCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----- 376
              +LPH+  +++ +  K   L +   KL     G V  D  D    + +   G L     
Sbjct: 395  REVLPHVGTEEHCETKKGFFLGYAVHKLLMCRLGRVDEDDRDHFGKKRLDLAGPLLGGLF 454

Query: 377  ---YLQLLKKEKSGTSAVLKES---DIYAAFRASSIESAMTNFLATGNV-SAGKNSTL-- 427
               + +L K  +      L E    +I AA +++ I   +   LATGN  S  KN  +  
Sbjct: 455  RVLFRKLTKDVRRHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNCESYRKNDCIFV 514

Query: 428  ------QLMQ-----------ASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEP 468
                   LM+           A+    +++ +NR+ Y S    + R +    +  + ++P
Sbjct: 515  FSCKPNNLMRHLGRLEGGDKGATTKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKP 574

Query: 469  RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIP--SVLVSLGMLPL 526
            RQL    WG +CP  TP+G   GL+     N  +  YI +   +Q+P    L       L
Sbjct: 575  RQLHNSHWGMVCPCETPEGQAVGLVK----NMALMAYITTGT-SQVPVMEFLEEFSTENL 629

Query: 527  TPVIQSIPEQA--LMVMLDGRIVGYILD--QIATSLVPKLRMLKIVGE-----KIPKSLE 577
            T ++ S+  ++    + ++G  VG   D   +  +     RM+ I  E      I +S  
Sbjct: 630  TDILPSVIAESSTCKIFVNGNWVGVHRDPRHLVHTFRSLRRMIDIDAEVSIVRDITESEV 689

Query: 578  IVYLK-----RP------EKGMGL----YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFE 622
             +Y       RP      ++ + +       +  F+  G+ L     L  G +E++ T E
Sbjct: 690  RIYTDAGRICRPLFIVNEDQELAIKKHHISQIQGFSEDGKRLTWTDLLMEGLVEYVDTEE 749

Query: 623  QVFMDICITMK---EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
            +    I +  K   E Y    TH E+  +  L   A++IP PD NQSPRN+YQ  MGKQ 
Sbjct: 750  EETTMIAMEPKDLGEGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNVYQSAMGKQA 809

Query: 680  MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
            MG    N++ +     + L  P  P       + L     P G N +VA++ YTGY+ ED
Sbjct: 810  MGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLKFRELPSGVNVVVAIMIYTGYNQED 869

Query: 740  AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
            ++I+N+S+ +RG     +F+S +      Y  Y  +   + V GS+       G ++ + 
Sbjct: 870  SLIMNQSAIDRG-----LFRSSY------YRCYNDQEKAASV-GSV-------GALNSET 910

Query: 800  LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN-RYVT 858
                  D  +   Y           +KL  DGLV  G +++  D +      +E      
Sbjct: 911  FEKPTMDNTRGMKY--------GDYNKLDEDGLVAPGTRVSGDDVLIGKTTPTEALANAP 962

Query: 859  CRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ-------RNPTVGDKFASRAGQ 911
             RY+ K +    +    SG  +  +V  +    GYR         R P VGDKFASR GQ
Sbjct: 963  SRYT-KRDCSTSMKATESGIVD--NVLISTTKEGYRFTKVRIRNVRVPQVGDKFASRHGQ 1019

Query: 912  KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            KG   + +  ED+PFT  G+VPDI+ NPH  PSRMTI  L
Sbjct: 1020 KGTVGMTYRQEDMPFTCEGIVPDIIVNPHAIPSRMTIAQL 1059



 Score = 46.2 bits (108), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY  +G E MY G  G  + A++F G   YQRL+H+V DK  ++
Sbjct: 1096 GYQRHGNEHMYQGHTGRPLNARVFIGPTFYQRLKHLVDDKIHSR 1139


>gi|83415463|gb|ABC17939.1| RNA polymerase II second largest subunit, partial [Cladochytrium
           replicatum]
          Length = 725

 Score =  202 bits (515), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 191/669 (28%), Positives = 289/669 (43%), Gaps = 150/669 (22%)

Query: 374 GSLYLQLLKKEKSGTSAVLKES-------DIYAAFRASSIESAMTNFLATGNVSAGKNST 426
           G L+ QL KK     +  +++        D+  A + + I++ +   LATGN   G    
Sbjct: 12  GGLFRQLFKKMTKEINNYMRKCVDTNLTFDLKWAVKGNIIKNGLQFSLATGN--WGDQKK 69

Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
           L   +A     +++ +NR  Y   +SH R ++     +E + ++PRQL    WG +CP  
Sbjct: 70  LNAARAG----VSQVLNRYTYASTLSHLRHLN-TPIGREGKLAKPRQLHNTHWGMVCPAE 124

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ---ALMV 540
           TP+G  CGL+ +L+    +S   PS+       VL  L +L L  + +  P Q   +  V
Sbjct: 125 TPEGQACGLVKNLSLMACVSVASPSR------PVLEFLEVLNLNNLDEIRPSQISHSTRV 178

Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
            L+G  VG + +     +V +LR L+   E  P+ L IV   R ++       L+++T  
Sbjct: 179 FLNGDWVGIVGESAVEEMVTELRNLRRKVEVSPE-LSIVRDVREKE-------LWIYTDA 230

Query: 601 GRMLRPV------------------------MN----LAAGNIEWIGTFEQVFMDICIT- 631
           GR+ RP+                        +N    L  G +E+I T E+  + I ++ 
Sbjct: 231 GRIYRPLFIVDEKTHHTFIQRRHVTQIHNRELNFDDLLVEGLVEYIDTLEEETIMIAMSQ 290

Query: 632 ----------MKEAYPGIT-------------------------THRELSKTDFLSNLAN 656
                     +++A P I                          TH E+     L   A+
Sbjct: 291 SDLTQTRTYLLQQADPDIELPLNPHANDTSYRLKPNAGAYSQQWTHCEIHPAMILGICAS 350

Query: 657 LIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDM 716
           +IP PD NQSPRN YQ  MGKQ MGT   N+  +    +  L  P  P       + L  
Sbjct: 351 IIPFPDHNQSPRNTYQSAMGKQAMGTFLTNYLLRYDTMMNILFYPQKPLGTTRSMEYLRF 410

Query: 717 DNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTET 776
              P G NA VA+  Y+GY+ ED++I+N SS +RG     +F+SM+      Y  Y  + 
Sbjct: 411 RELPAGQNACVAIACYSGYNQEDSIIMNXSSIDRG-----LFRSMY------YRVYMDQE 459

Query: 777 MYSGVDGSMMQAQIFFGVVHYQ--RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVY 834
              G    M+Q + F         RLRH   +K               LED    DGL+ 
Sbjct: 460 KKVG----MLQTETFEKPTRETTLRLRHGTYEK---------------LED----DGLIA 496

Query: 835 VGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            G +++  D       P+ +   E   R        K +    +     G  +   VT N
Sbjct: 497 PGMRVSGDDIIIGKTVPLQTESDELGQRQAQT----KRDASTPLKSTEQGIVDSVLVTTN 552

Query: 888 C---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
                +I  R++  R P +GDKFASR GQKG   + +  ED+PFT  G+ PD++ NPH  
Sbjct: 553 SDGYKFIKVRVRSVRIPQMGDKFASRHGQKGTVGMTYRQEDMPFTAEGISPDLIVNPHAI 612

Query: 943 PSRMTIGFL 951
           PSRMTIG L
Sbjct: 613 PSRMTIGHL 621



 Score = 48.1 bits (113), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           E G+   G E +Y+G  G  ++AQ+F G  +YQRL+HMV DK  ++
Sbjct: 656 EHGHQQRGFEVLYNGHTGKKLRAQLFMGPTYYQRLKHMVDDKIHSR 701


>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score =  202 bits (514), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 275/609 (45%), Gaps = 104/609 (17%)

Query: 393  KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
            K+ ++  A +A +I S +   LATGN         Q  QA     +++ +NR+ Y   +S
Sbjct: 471  KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANQAGTRAGVSQVLNRLTYASTLS 523

Query: 450  HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
            H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+    + 
Sbjct: 524  HLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 582

Query: 510  VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
             + +      +     ++P +  IP QA  + ++G  VG  + +    LV  LR L+   
Sbjct: 583  PILEFLEEWGTENFEEISPAV--IP-QAAKIFVNGCWVG--IHRNPDLLVKTLRRLR--- 634

Query: 570  EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +I  + E+  ++           L L+T  GR  RP+  +                   
Sbjct: 635  RQIDVNTEVGVVRDIR-----LKELRLYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRE 689

Query: 611  ----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTDF 650
                      A G IE+I T E+    I +T+          +EAY    TH E+  +  
Sbjct: 690  TPDEGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLI 749

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++ +     Y L  P  P      
Sbjct: 750  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 809

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F       +
Sbjct: 810  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLFFR-----S 859

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y   E       G++++ +  FG  + +    M    +                DKL  D
Sbjct: 860  YRDEEKKM----GTLVKEE--FGRPNRENTMGMRHGSY----------------DKLDDD 897

Query: 831  GLVYVGAKLNERDPMY---SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            GL   G +++  D +    S   + + +    RYS K +    +    SG  +   +T N
Sbjct: 898  GLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYS-KRDHSTSLRHSESGMVDQVLLTTN 956

Query: 888  C---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
                 ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH  
Sbjct: 957  ADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAI 1016

Query: 943  PSRMTIGFL 951
            PSRMTIG L
Sbjct: 1017 PSRMTIGQL 1025



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V++    K       T T E     +G+VPIML+S  C L 
Sbjct: 150 FPKSARLRNLTYSAPLYVDVSYRVVKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLF 209

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYF++ G EK++        NH    K+
Sbjct: 210 QQSEKDLTELGECPYDQGGYFVINGSEKVLIAQEKMSTNHVYVFKK 255



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1062 GYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1111


>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
          Length = 1175

 Score =  202 bits (514), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 193/694 (27%), Positives = 300/694 (43%), Gaps = 118/694 (17%)

Query: 323 MLTNCILPH--LDDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH  + D+ +  K   L +M  +L     G  +LD  D    + +   G    
Sbjct: 342 ILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLA 401

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 402 FLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA-- 459

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R V+     ++ + ++PRQL    WG +CP  T
Sbjct: 460 --HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMLCPAET 514

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S    A  + ++
Sbjct: 515 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 570

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 571 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 621

Query: 604 LRPVM-----NL------------------------AAGNIEWIGTFEQVFMDICITMKE 634
            RP++     NL                        A+G +E+I T E+  + I ++ ++
Sbjct: 622 CRPLLIVEGQNLLLKKRHIDMLKERDYTNYGWQVLVASGVVEYIDTLEEETVMIAMSPED 681

Query: 635 -------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  AY    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 682 LRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 741

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
             +     + L  P  P       + L     P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 742 HVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 801

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
            ERGF     F+S+F       +Y  +E+   G        +  F     Q  + M    
Sbjct: 802 VERGF-----FRSVFYR-----SYKDSESKRIG------DQEEQFEKPTRQTCQGM---- 841

Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
                         A+ DKL  DG++  G +++  D +          + E    T R++
Sbjct: 842 ------------RNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDELDSATKRFT 889

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
            K +    +    +G  +   +T N        I  R  R P +GDKFASR GQKG C +
Sbjct: 890 -KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 948

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ++  ED+PF+  GL PDI+ NPH  PSRMTIG L
Sbjct: 949 QYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHL 982



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V +  +    A      +     +G++PIML+S  C L  LT  
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIVKDAEDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDR 169

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 170 DLTELNECPLDPGGYFIINGSEKVL 194



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY   G E MY+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1018 EYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1063


>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score =  202 bits (514), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 178/609 (29%), Positives = 276/609 (45%), Gaps = 104/609 (17%)

Query: 393  KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
            KE ++  A +A +I S +   LATGN         Q  QA     +++ +NR+ Y   +S
Sbjct: 465  KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANQAGTRAGVSQVLNRLTYASTLS 517

Query: 450  HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
            H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+    + 
Sbjct: 518  HLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 576

Query: 510  VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
             + +      +     ++P +  IP QA  + ++G  VG  + +    LV  LR L+   
Sbjct: 577  PILEFLEEWGTENFEEISPAV--IP-QAAKIFVNGCWVG--IHRNPDLLVKTLRRLR--- 628

Query: 570  EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----------------- 609
             +I  + E+  ++           L L+T  GR  RP   V N                 
Sbjct: 629  RQIDVNTEVGVVRDIR-----LKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRE 683

Query: 610  ---------LAAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTDF 650
                     +A G IE+I T E+    I +T+          +EAY    TH E+  +  
Sbjct: 684  TPEEGWHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLI 743

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++ +     Y L  P  P      
Sbjct: 744  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 803

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F       +
Sbjct: 804  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLFFR-----S 853

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y   E       G++++ +  FG  + +    M    +                DKL  D
Sbjct: 854  YRDEEKKM----GTLVKEE--FGRPNRENTMGMRHGSY----------------DKLDDD 891

Query: 831  GLVYVGAKLNERDPMY---SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            GL   G +++  D +    S   + + +    RY+ K +    +    SG  +   +T N
Sbjct: 892  GLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYT-KRDHSTSLRHSESGMVDQVLLTTN 950

Query: 888  C---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
                 ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH  
Sbjct: 951  ADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAI 1010

Query: 943  PSRMTIGFL 951
            PSRMTIG L
Sbjct: 1011 PSRMTIGQL 1019



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V++    K       T T E     +G+VPIML+S  C L 
Sbjct: 144 FPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLF 203

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 204 QQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 249



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1056 GYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1105


>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 178/609 (29%), Positives = 276/609 (45%), Gaps = 104/609 (17%)

Query: 393  KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
            KE ++  A +A +I S +   LATGN         Q  QA     +++ +NR+ Y   +S
Sbjct: 461  KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANQAGTRAGVSQVLNRLTYASTLS 513

Query: 450  HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
            H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+    + 
Sbjct: 514  HLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 572

Query: 510  VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
             + +      +     ++P +  IP QA  + ++G  VG  + +    LV  LR L+   
Sbjct: 573  PILEFLEEWGTENFEEISPAV--IP-QAAKIFVNGCWVG--IHRNPDLLVKTLRRLR--- 624

Query: 570  EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----------------- 609
             +I  + E+  ++           L L+T  GR  RP   V N                 
Sbjct: 625  RQIDVNTEVGVVRDIR-----LKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRE 679

Query: 610  ---------LAAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTDF 650
                     +A G IE+I T E+    I +T+          +EAY    TH E+  +  
Sbjct: 680  TPEEGWHDLVAKGFIEYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLI 739

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++ +     Y L  P  P      
Sbjct: 740  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 799

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F       +
Sbjct: 800  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLFFR-----S 849

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y   E       G++++ +  FG  + +    M    +                DKL  D
Sbjct: 850  YRDEEKKM----GTLVKEE--FGRPNRENTMGMRHGSY----------------DKLDDD 887

Query: 831  GLVYVGAKLNERDPMY---SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            GL   G +++  D +    S   + + +    RY+ K +    +    SG  +   +T N
Sbjct: 888  GLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYT-KRDHSTSLRHSESGMVDQVLLTTN 946

Query: 888  C---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
                 ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH  
Sbjct: 947  ADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAI 1006

Query: 943  PSRMTIGFL 951
            PSRMTIG L
Sbjct: 1007 PSRMTIGQL 1015



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V++    K       T T E     +G+VPIML+S  C L 
Sbjct: 140 FPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLF 199

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 200 QQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 245



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1052 GYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1101


>gi|308161806|gb|EFO64240.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia P15]
          Length = 1239

 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 183/661 (27%), Positives = 283/661 (42%), Gaps = 117/661 (17%)

Query: 355  GMVQLDSEDSIMLQEIMTGGSL--------YLQLLKKEKSGTSAVLKES----------D 396
            G+++ DS+D +  ++I T G L        +  LL         +L+            D
Sbjct: 435  GVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMVRKVDNILRSDRNRGTDLTNYD 494

Query: 397  IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
            I +   +S I  A    ++TGN    K    +       V +++ ++R+ Y+S    V R
Sbjct: 495  IVSLVDSSIITRAFNTAISTGNWKIEKIGVDR-------VGVSQVLSRLSYISALGQVTR 547

Query: 457  --GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
               ++ + M+SS PR L     G  CP  TP+G   G++ +L+   +IS+    +    I
Sbjct: 548  LSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARISK---DESTDSI 604

Query: 515  PSVLVSLGMLPLTPVIQSIPEQ---ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK 571
              +L+S+G+  L               MV L+G I G I   +    +  LR  +  G  
Sbjct: 605  SKLLMSIGVEDLASCWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFIITLRTFRRKGY- 663

Query: 572  IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NIEWIGTFEQV 624
                  I YL         +  +Y+    GR  RP++ +  G       +IE +   ++ 
Sbjct: 664  ------ISYLTSFHFN-DEHQAVYINCDSGRACRPLLIVENGKLMLTRNDIELLMDNQKC 716

Query: 625  FMDICITMKEAYPGIT------------------THRELSKTDFLSNLANLIPMPDCNQS 666
            F+D+    K  Y  +                   TH E+     L  +  LIP P  NQS
Sbjct: 717  FVDLIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLLGYVVGLIPYPHHNQS 776

Query: 667  PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
            PRN YQC MGKQ  G    N   +    ++ L  P  P            +  P G NA 
Sbjct: 777  PRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQRPLTSTKILKLTGYERLPAGQNAT 836

Query: 727  VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
            V V+SY+ +D+EDA+ILN+++ +RGF    I++S+  EL    N  G+++    VDG   
Sbjct: 837  VCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSISTEL----NSIGSKS----VDGI-- 886

Query: 787  QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY 846
               I  G                 KD+  +     A+ED    DGL  VGA L   D + 
Sbjct: 887  -KDILLG---------------PPKDHLKQYEGYHAIED----DGLCAVGAHLKTGDIVI 926

Query: 847  SYWKESENRYVTC--RYSGKEEMCVEVVRM---------SSGFTEGGSVTPN-----CAY 890
                 ++ R++T     S   E  V +++          ++ + +   VT N        
Sbjct: 927  -----NKGRHITNIPGLSDGTEATVSLIKSPESLKSPLETTTYIDKVLVTTNGDGNMLIK 981

Query: 891  IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
            +  R  R P VGDKF+SR GQKG+C +  P  DLPFT  G+VPD++ NPHG+PSRMT+  
Sbjct: 982  VLTREPRRPEVGDKFSSRHGQKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAK 1041

Query: 951  L 951
            L
Sbjct: 1042 L 1042



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 72  HIASFDFMLDEGLDLAVED----IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           H+ SF+ +LD  +   + +    +     + + +  K+++ + +    K+ +   G    
Sbjct: 38  HLDSFNHLLDVTIPAIIRENSLLVVAKHPQFHLRIEKVDVKQVSQGSSKLASSSAGSGVG 97

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPA 185
              P E RQ    Y+ P  + V      K+   + K++  G +PIML+S RC L N +  
Sbjct: 98  -LTPHECRQRNMTYAAPITIDVRCKASNKSSVQYYKDICIGYIPIMLRSNRCILTNKSRK 156

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           Q     E PD+ GGYFIV G EK + LL      + I + RNA  N
Sbjct: 157 QQAFLQECPDDPGGYFIVRGAEKSI-LLAEQMTMNRIVVGRNADGN 201



 Score = 48.1 bits (113), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 32/45 (71%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +G++Y G + +YSG+ G ++   IF G ++YQ+L+HMV DK  ++
Sbjct: 1082 AGFSYSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDKIHSR 1126


>gi|7023086|dbj|BAA91831.1| unnamed protein product [Homo sapiens]
          Length = 336

 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 168/331 (50%), Gaps = 38/331 (11%)

Query: 38  QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
           +N  S PSLK+LTD ++G P ++Q   L  L   H+ SF++ + EGL LAV+ I P EF 
Sbjct: 8   RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67

Query: 98  IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
              + +   I+ A IS P VP G +    N  YP E R  RS Y G     + W+ +G +
Sbjct: 68  FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126

Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
            G   + +G VPIM+KSK C+LRNL P  LIE  E  +E GGYFI+ G EK++R+LI  R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186

Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
           RN PIA+ R  WK RG  ++  GV +  V+ + SA N  LH++ NG+    F +RK +  
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246

Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
           L                                     M++ + EEG  TQ     + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGWLTQKQVLNYLGE 306

Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHL 332
            F+ KL     + NE +  +++   CI  HL
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHL 336


>gi|320101550|ref|YP_004177142.1| DNA-directed RNA polymerase subunit B' ;DNA-directed RNA polymerase
           subunit B' [Desulfurococcus mucosus DSM 2162]
 gi|319753902|gb|ADV65660.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA
           polymerase, subunit B' [Desulfurococcus mucosus DSM
           2162]
          Length = 1165

 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 192/710 (27%), Positives = 304/710 (42%), Gaps = 141/710 (19%)

Query: 323 MLTNCILPHL------DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL 376
           +L   +LPH+      +    K + +  M  ++  +  G    D +D    + +   G +
Sbjct: 316 LLDERLLPHIGTDPSPETRLRKAVFIGQMISRIIELYLGYRSPDDKDHYRNKRLKLAGDM 375

Query: 377 YLQLLKKEKSGTSAVLKES-----------DIYAAFRASSIESAMTNFLATGNVSAGKNS 425
              LL+    G S  +KE            D+   F+ S I   + + +ATGN   G+  
Sbjct: 376 LATLLRAAIMGFSREIKEGVEKQLAKTRKVDLKMVFKPSIITDRLLHAMATGNWPGGRTG 435

Query: 426 TLQLMQASGFVIMAENINRMRYMSHFRAV----HRGS-YFQEMRSSEPRQLRTDAWGFIC 480
             QL+         +  N +  +SH R V     RG  +F      E R+L    WG +C
Sbjct: 436 VSQLL---------DRTNMLSTLSHLRRVVSPLARGQPHF------EARELHGTQWGRMC 480

Query: 481 PVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPV---------IQ 531
           P  TP+G   GL+ +L     +S  +  K   +I  +L  +G++PL  +         I 
Sbjct: 481 PFETPEGANIGLVKNLALMTNVSVGVDDK---EIELLLYRIGVVPLVSINTGDKSYKGIL 537

Query: 532 SIPEQAL--------------MVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLE 577
            I  + +               V L+G++VGY   +    L   +R L+  G KI   + 
Sbjct: 538 DIIREDVSAAVELSEKYSGWSKVFLNGKLVGY--HRNGEELARAIRELRRKG-KISSEVN 594

Query: 578 IVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN----IEWIGTFEQVFMDICITMK 633
           + ++       G    + + T PGR+ RP++ +  G      E +   E+  +     +K
Sbjct: 595 VAHINS-----GYVDEVVVNTDPGRIRRPLIVVENGKPKLTREHVKMLEEGRLGFEDLVK 649

Query: 634 E-------------AY----PGIT----THRELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
           +             AY    PG      TH E+     L   A++IP P+ NQSPRNMYQ
Sbjct: 650 QGIIEYLDPDEEENAYIALEPGSVGAEHTHMEIWIPAILGITASIIPYPEHNQSPRNMYQ 709

Query: 673 CQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISY 732
             M KQ++G    N++ +   + + L  P  P  +    D +  +  P G N +VAV++Y
Sbjct: 710 SAMAKQSLGLYAANFQRRMDTRGHFLHYPQKPLVQTRAMDVIGYNERPAGQNMVVAVLTY 769

Query: 733 TGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFF 792
           TGY+MEDA+ILNKSS +RG A    F+ ++  +E  Y Y G            +Q +I  
Sbjct: 770 TGYNMEDALILNKSSVDRGLARSTFFR-LYTTVE--YKYPGG-----------IQDEITI 815

Query: 793 GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL-GPDGLVYVGAKLNER--DPMYSYW 849
              +              + Y G+    K  ED +  P+  V  G  L  +   P +   
Sbjct: 816 PSTN-------------IRGYRGQKAYEKLEEDGIVAPETPVTGGDVLIGKISPPRFLSA 862

Query: 850 KESE--------NRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
           +E E        +  V  R+  K  +   ++ M S   EG  +      +  R  R P +
Sbjct: 863 QEYEVGSTLTRQDTSVVMRHEEKGVVDTVLITMDS---EGNKLIK----VRVRDLRIPEL 915

Query: 902 GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GDKFASR GQKG+  +  P  D+PFT+ G+VPD++ NPH FPSRMT+  L
Sbjct: 916 GDKFASRHGQKGVVGLLVPQYDMPFTEEGVVPDLIINPHAFPSRMTVAQL 965



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 9/141 (6%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  L E L   +E+    E  I  KT ++ I K  + EPK  +   GI  +K  P
Sbjct: 30  HLDSYERFLKELLPSILEEFR--EIRIAEKT-RIVIEKYRVDEPKWTSIE-GIEESKS-P 84

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVG--RVPIMLKSKRCHLRNLTPAQLIE 189
            E R     Y+ P  VTV    + ++G T  +E+    +P+MLKS    L  LTP +L+ 
Sbjct: 85  MECRLRNLTYATPVYVTV--RIEDESGYTREQELKLMDLPVMLKSSIDPLSKLTPEELVA 142

Query: 190 RGEHPDEWGGYFIVGGHEKLV 210
            GE P + GGYFI+ G EK++
Sbjct: 143 MGEDPRDPGGYFIINGSEKVI 163



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 750  RGFAHGCIFKSMFIELE-----SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
            R F     +K+   EL+      GY+  G E MY G  G ++ A +F GVV+YQ+L HMV
Sbjct: 979  RTFDATPFYKTPIEELQVIIKRHGYSPTGEEAMYDGRTGELLDAPVFIGVVYYQKLHHMV 1038

Query: 805  SDKWQTK 811
            SDK   +
Sbjct: 1039 SDKMHAR 1045


>gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Ustilago maydis]
          Length = 887

 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 201/765 (26%), Positives = 315/765 (41%), Gaps = 143/765 (18%)

Query: 277 LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD--- 333
           +L M++   EE    Q D  V    I +      L           +L   +LPH+    
Sbjct: 105 MLEMLKPCIEEAFVIQ-DRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSE 163

Query: 334 -DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGT 388
                K     +M  +L        ++D  D    + I  GG    +L+  L +K     
Sbjct: 164 GSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDV 223

Query: 389 SAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
              L       +E  I AA ++S+I + +   LATGN    K +    MQA   V  ++ 
Sbjct: 224 YRHLQKCVEEHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKA----MQAKAGV--SQV 277

Query: 442 INRMRYMSHFRAVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
           +NR  + S    + R +    ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+  
Sbjct: 278 LNRFAFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLM 337

Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
             ++   PS   A I   L   G+  L   +Q    +A  + ++G  +G   D     LV
Sbjct: 338 ATVTVGTPS---APIVEFLEEFGLDSLVD-MQLAHAKATKIFVNGVWMGTHDD--PGQLV 391

Query: 560 PKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV-------MNL-- 610
             LR L+   + I   + +V   R  +       L ++T   R+LRPV       M+L  
Sbjct: 392 DTLRDLR-RKDDISHEVSVVRDIRERE-------LRIYTDASRVLRPVFIVNPHDMSLLI 443

Query: 611 -------------------------AAGNIEWIGTFEQVFMDICITMKE----------- 634
                                      G IE++   E+  + IC++  +           
Sbjct: 444 KKRHVEMIGQPIPETGEEFRWTHLVQEGVIEYLDAEEEESVLICMSTTDLEQSREYKARN 503

Query: 635 -------------------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
                                P   TH E+     L   A+++P PD NQSPRN+YQ  M
Sbjct: 504 GQINLNSADPSARLKSVHTIAPDTWTHCEIHPAMVLGICASIVPFPDHNQSPRNVYQSAM 563

Query: 676 GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGY 735
           GKQ +G P  N + +     + L  P  P       + L     P G NAIVA++ Y+GY
Sbjct: 564 GKQAIGIPISNIQSRADSMAHVLLYPQKPLGTTRSMEHLRFRELPAGQNAIVAIMCYSGY 623

Query: 736 DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVV 795
           + ED++I+N+SS +RG     +F+SM+      Y  Y  E    GV    MQ + F    
Sbjct: 624 NQEDSVIMNQSSIDRG-----LFRSMY------YRGYMAEEKKVGV----MQLEEF---- 664

Query: 796 HYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK----E 851
             ++     + + +   Y           DK+  DGL   G +++  D +         +
Sbjct: 665 --EKPHRDTTIRMKHGTY-----------DKIDADGLCAPGTRVSGDDVIIGKTAPLPPD 711

Query: 852 SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFA 906
           SE   +  +   K++  V +    +G  +   VT N     ++  R++  R P  GDKFA
Sbjct: 712 SEELGMRSKLHTKKDASVSLKSTENGIIDQVLVTTNSHGNKFVKVRVRSTRVPQTGDKFA 771

Query: 907 SRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           SR GQKG   + +  ED+PF+  G+ PDI+ NPH  PSRMTIG L
Sbjct: 772 SRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGHL 816



 Score = 42.4 bits (98), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
           GY   G E MY G  G  +QAQ++ G  +YQRL+H
Sbjct: 853 GYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKH 887


>gi|387592536|gb|EIJ87560.1| RNA polymerase [Nematocida parisii ERTm3]
 gi|387595162|gb|EIJ92787.1| RNA polymerase [Nematocida parisii ERTm1]
          Length = 1089

 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 223/896 (24%), Positives = 351/896 (39%), Gaps = 167/896 (18%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN--------- 181
           P E R     YSG   V V ++       +    VG++PIML S R  LR          
Sbjct: 92  PEECRIRNMTYSGDIVVDVEYTRGKDIISSRNVVVGKMPIMLGS-RLSLRQKEFMENQVG 150

Query: 182 ---------LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNR 232
                      P     + E P + GGYFI  G E++            + ++    KNR
Sbjct: 151 IDTSNMQRITNPMYTRPKNECPYDIGGYFICKGVERV------------LLMQEQLAKNR 198

Query: 233 GLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQ 292
            L+ +D    + +V    S        V         SH      + +   +   G+ T 
Sbjct: 199 ILIETDFRGDLCAVVTSSSLERKSKTKVVMKKKLLYLSHNSLTEDIPLNIVMKGMGVTTD 258

Query: 293 HDSKVFFGQIFKE--KLQYDLRHL-----------NEVEICDYMLTNCILPHL----DDY 335
            +  +  GQ  +    ++ +L  L             ++    +L + IL H+     D 
Sbjct: 259 LEIDILIGQPVQSIAHIRTELEALAWIGSRIKTRSGGIDEARLLLCDIILAHIPGTGTDM 318

Query: 336 WDKFLCLSHMTCKLFHVVQGMVQL--DSEDSIMLQEI-MTGGSLYLQLLKKEKSGTSAVL 392
             K   LS M   L     G      + +D +  + I +TG  L L      K   + + 
Sbjct: 319 RRKAEYLSVMARMLIDTANGNTDTLQNDKDFVGNKRIELTGQMLSLLFEDLLKRLNTEIK 378

Query: 393 KESDIYAAFRASSIESAMTNFL-------ATGNVSAGKNSTLQL----MQASGFVIMAEN 441
           K  D     RA + E    +FL        TG + A    +  L    M+ +G   +   
Sbjct: 379 KALDRVLCKRARAQELDALHFLVMNRGMITTGLLRAISTGSWSLKRFRMERAGITQVLTR 438

Query: 442 INRMRYMSHFRAVHRGSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
           ++R+  +     V   S F++ R  S PR L    WG  CP  TP+G  CGL+  L    
Sbjct: 439 LSRLSAIGMCSRVS--SQFEKTRKVSGPRALHCSQWGVFCPADTPEGEACGLVKSLA--- 493

Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
            ++E  P++    + S L  LG+  ++ +     E++    ++G I+G   D     +  
Sbjct: 494 MLTEITPAESEESVISALSFLGIEDISVISTGDMEKSKKCWVNGVIIGICSD--PARMAC 551

Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGT 620
           +LR ++  G  IP ++          G+ +   L++ T  GR+ RP++ +  G  +   T
Sbjct: 552 ELRKVRRNGS-IPSTV----------GIWVNNDLFISTETGRLTRPLIIVEDGEPKLTQT 600

Query: 621 FEQVFMD--------------ICITMKEAYPGI-----------TTHRELSKTDFLSNLA 655
             ++  +               CI   EA   +           TTH E+     L  +A
Sbjct: 601 HIRLLKEGYKTVNDLLREGLIECIDQNEAKNSLIAVWRTEITQDTTHLEIDPAAILGYVA 660

Query: 656 NLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLD 715
            +IP P  NQSPRN YQC MGKQ +G   ++ R +  G  + +  P  P       + + 
Sbjct: 661 GVIPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATRGMEIIK 720

Query: 716 MDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTE 775
            +  P G N  +AV+S +GYD+EDA+ILNK+S +RG     +FK+  + L +        
Sbjct: 721 YNELPAGQNLTIAVMSMSGYDIEDALILNKASIDRGIGRALLFKTHALSLRTYPGGAADT 780

Query: 776 TMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA--NKALEDKLGPDGLV 833
            +  G+    M+ Q   G+    R   M S       Y G D A  +K    + G D L+
Sbjct: 781 IVGDGIPSPGMKVQ--EGITFIDRRTPMGSKAGAV--YRGLDSASIDKTAIMRTGDD-LI 835

Query: 834 YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
            + A + E                                                   +
Sbjct: 836 TIKAVVKE---------------------------------------------------H 844

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           RI R   +GDKF+SR GQKG+  +  P ED+PF + G+ PD+V NPHGFPSRMT+G
Sbjct: 845 RIPR---IGDKFSSRHGQKGVVGLILPQEDMPFNEMGISPDLVMNPHGFPSRMTVG 897



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            GY+  G ET+  G  G  +  +IFFG V YQRL+HMV+DK   +    R    +   +  
Sbjct: 939  GYSETGKETLICGTSGEQIPVRIFFGPVFYQRLKHMVTDKMHARARGPRAVLTRQPTEGR 998

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              DG   +G    ERD +  Y
Sbjct: 999  CRDGGFRLGEM--ERDCLIGY 1017


>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
 gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 175/609 (28%), Positives = 273/609 (44%), Gaps = 104/609 (17%)

Query: 393  KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
            KE ++  A +A +I S +   LATGN         Q  QA     +++ +NR+ Y   +S
Sbjct: 461  KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANQAGTRAGVSQVLNRLTYASTLS 513

Query: 450  HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
            H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+    + 
Sbjct: 514  HLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 572

Query: 510  VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
             + +      +     ++P +  IP QA  + ++G  VG  + +    LV  LR L+   
Sbjct: 573  PILEFLEEWGTENFEEISPAV--IP-QAAKIFVNGCWVG--IHRNPDLLVKTLRRLR--- 624

Query: 570  EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +I  + E+  ++           L L+T  GR  RP+  +                   
Sbjct: 625  RQIDVNTEVGVVRDIR-----LKELRLYTDYGRCSRPLFIVEGQRLLIKKAHIIALQHRE 679

Query: 611  ----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTDF 650
                      + G IE+I T E+    I +T+          ++AY    TH E+  +  
Sbjct: 680  TPDEGWHELVSKGYIEYIDTEEEETTMISMTISDLHNARHNPEDAYSETYTHCEIHPSLI 739

Query: 651  LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++ +     Y L  P  P      
Sbjct: 740  LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 799

Query: 711  YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F       +
Sbjct: 800  MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLFFR-----S 849

Query: 771  YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
            Y   E       G++++ +  FG  + +    M    +                DKL  D
Sbjct: 850  YRDEEKKM----GTLVKEE--FGRPNRENTMGMRHGSY----------------DKLDDD 887

Query: 831  GLVYVGAKLNERDPMY---SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            GL   G +++  D +    S   + + +    RYS K +    +    SG  +   +T N
Sbjct: 888  GLAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYS-KRDHSTSLRHSESGMVDQVLLTTN 946

Query: 888  CAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
               + +     R  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH  
Sbjct: 947  ADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAI 1006

Query: 943  PSRMTIGFL 951
            PSRMTIG L
Sbjct: 1007 PSRMTIGQL 1015



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V++    K       T T +     +G+VPIML+S  C L 
Sbjct: 155 FPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETADYPKVFIGKVPIMLRSSYCTLY 214

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 215 QQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 260



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 769  YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            Y   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1053 YQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1101


>gi|24370467|emb|CAC70148.1| putative RNA polymerase B [Brugia malayi]
          Length = 453

 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 214/442 (48%), Gaps = 64/442 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEI-YGKTLKLNIVKAAISEP--KVPAGPVGIHFNK 128
           H+ SFD++ ++G+ LA  D+   +F +  G+ ++L    A +  P  +V  G   +   K
Sbjct: 9   HVESFDYLAEKGIHLAALDVPAEKFRLPTGEAVELRYTSAQLGYPMVEVKQGSSVVDSLK 68

Query: 129 YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
            +P+E RQ    Y GP  V+V    +G         VG VPIMLKS RCHLR LT  QL+
Sbjct: 69  LFPSECRQRGLTYRGPLKVSVEIRLNGVKMDFCEVIVGEVPIMLKSNRCHLRWLTREQLV 128

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
             GE   E GGYFI  G EK++RLL+ NRRN+PI I R +++ +G LF+  G+ IR V+ 
Sbjct: 129 AHGEEGTEKGGYFICKGTEKVIRLLVANRRNYPIGIVRRSFREKGPLFTQYGMMIRCVRG 188

Query: 249 DESATNNVLHFVTNGSARFMFSHRKSM--------------------------------- 275
           + SA    LH++ +G+      +R+ +                                 
Sbjct: 189 NYSAVMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRPGDHF 248

Query: 276 ---CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLR--HLNEVEICDYMLTNCILP 330
              C+  M+   +++G+  Q  +    G  F+   Q  +    ++E ++  ++L  C+  
Sbjct: 249 WKGCVTAMLALCNDDGVVNQKTALTAIGARFRVATQDRVGPWEISE-DVGRFLLRVCVAI 307

Query: 331 HLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------- 383
           HLD+  DKF  LS+M  KL  + +G    +S D+   QE    G + L ++++       
Sbjct: 308 HLDNDEDKFFLLSYMAQKLIALAKGECAAESPDNPQFQEAAVSGHILLLIIRERLENTLS 367

Query: 384 ----------EKSGTSAVLKESDIYAAF---RASSIESAMTNFLATGNVSAGKNSTLQLM 430
                     ++   S +L   ++  A    R+  I   +  F+ATGN+      TLQ  
Sbjct: 368 IARRKIELEAKRKAESFLLSSHELIRAMGTQRSGEITRGLEYFIATGNLITKGGLTLQ-- 425

Query: 431 QASGFVIMAENINRMRYMSHFR 452
           Q +GF ++AE IN++R++SHFR
Sbjct: 426 QNNGFSVIAERINQLRFVSHFR 447


>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Glycine max]
          Length = 1193

 Score =  200 bits (509), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 173/616 (28%), Positives = 269/616 (43%), Gaps = 117/616 (18%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 434 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 486

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 487 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 542

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               I   L   G      +  ++  QA  + ++G  +G   D     LV  LR L+   
Sbjct: 543 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRD--PDMLVRTLRKLR--- 597

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
            ++  + E+  ++       +   L ++T  GR  RP+  +                   
Sbjct: 598 RRVDVNTEVGVVRDI-----ILKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRE 652

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      + G IE+I T E+    I +T+          ++AY G  TH E+  + 
Sbjct: 653 SPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSL 712

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 713 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 773 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 821

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANK-----AL 823
             Y  E    G                              K+ FGR D AN        
Sbjct: 822 RSYRDEEKKMGT---------------------------LVKEDFGRPDRANTMGMRHGS 854

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
            DKL  DGL   G +++  D +        + E +    RY+ + +  + +    +G  +
Sbjct: 855 YDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYT-RRDHSISLRHSETGIVD 913

Query: 881 GGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
              +T N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI
Sbjct: 914 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPH  PSRMTIG L
Sbjct: 974 IVNPHAIPSRMTIGQL 989



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSW--DGKAGGTFTKE-------VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V+      G  G   T+        +G+VPIML+S  C L 
Sbjct: 113 FPKAARLRNLTYSAPLYVDVSKRVVKKGHDGEEVTETQDLTKVFIGKVPIMLRSSYCTLY 172

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 173 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 218



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1026 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1075


>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma
           mansoni]
          Length = 1158

 Score =  200 bits (509), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 267/610 (43%), Gaps = 107/610 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A R+  I   +   LATGN    K +     QA   V  ++ +NR+ +   +S
Sbjct: 407 KDFNLELAIRSQIITDGLKYSLATGNWGDQKKAN----QARPGV--SQVLNRLTFASTLS 460

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPS 508
           H R ++     ++ + + PRQL    WG ICP  TP+G   GL+ +L     IS    PS
Sbjct: 461 HLRRLN-SPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPS 519

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
            +L      L    M  L  +  S   +   + ++G  VG  +      L+  LR L+  
Sbjct: 520 PIL----EFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVG--IHSSPDHLMGTLRKLRRQ 573

Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------------- 614
            + I   + ++   R ++       + ++T  GR+ RP++ +  G               
Sbjct: 574 VDVIVSEVSMIRDYRDQE-------IRIYTDAGRICRPLVIVEKGKLLLKRSHIELLKDK 626

Query: 615 ---------------IEWIGTFEQVFMDICITMKEAYPGIT-----THRELSKTDFLSNL 654
                          +E+I T E+  + I +   E    +      TH E+  +  L   
Sbjct: 627 AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCKTHTHCEIHPSMILGIC 686

Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
           A++IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P  P       + L
Sbjct: 687 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYL 746

Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
                P G NAIVA+ +YTGY+ ED++I+N+S+ +RGF     F+S F      Y  Y  
Sbjct: 747 RFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGF-----FRSEF------YRTYKD 795

Query: 775 ETMYSGVDGSMMQAQIFF--GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
           +    G+D      ++F      + Q +RH                   A+ DKL  DGL
Sbjct: 796 QETRHGMD----LEEVFEKPNPQNCQGMRH-------------------AIYDKLDDDGL 832

Query: 833 VYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
           +  G +++  D +          E E      RY+ K +  V + R   G  +   VT N
Sbjct: 833 IAPGTRVSGDDVLIGKTITLPENEDEMEGGQRRYT-KRDASVFMRRSEYGIVDQVMVTWN 891

Query: 888 ------CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                 C  +  R  + P VGDKFASR GQKG C +++  ED+PFT  G+ PDI+ NPH 
Sbjct: 892 NEGNKFCK-VRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 950

Query: 942 FPSRMTIGFL 951
            PSRMTIG L
Sbjct: 951 IPSRMTIGHL 960



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY + G E MY+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 996  EYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSR 1041



 Score = 45.1 bits (105), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSW---DGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPAQ 186
           P +AR     Y+ P  V V       + +      K+ +G++PIML+S  C L  ++   
Sbjct: 90  PNDARLRNLTYAAPLYVDVMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRD 149

Query: 187 LIERGEHPDEWGGYFIVGGHEKLV 210
           L E  E P + GGYFI+ G EK++
Sbjct: 150 LAELNECPLDPGGYFIINGSEKVL 173


>gi|161899557|ref|XP_001713004.1| second-largest subunit of DNA-directed RNA polymerase I
           [Bigelowiella natans]
 gi|75756499|gb|ABA27392.1| second-largest subunit of DNA-directed RNA polymerase I
           [Bigelowiella natans]
          Length = 1137

 Score =  200 bits (509), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 215/873 (24%), Positives = 365/873 (41%), Gaps = 142/873 (16%)

Query: 168 VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           +P+ML S RC++ +    + ++  E      GYF+  G  K++R+    ++NH   IK+ 
Sbjct: 110 LPMMLGSIRCNVHSQIITRNVQLSEKKVFKTGYFVSKGKSKVIRISNTIKKNHIFLIKKK 169

Query: 228 AWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS---------MCLL 278
           + K+     S   + I+  K++       +    +    F+F  R           +C +
Sbjct: 170 SHKSNA---SKTYILIKISKKNSENFITKIFLSRSKGIIFIFGSRDYDIEIFSEVLLCSI 226

Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEIC-----------DYM---- 323
              + L  +  +  H S  + G+I +  L+    + N V+             DY     
Sbjct: 227 LDNKKLSGQISNENHYSNFYNGRICRHLLKQFYINSNLVQHAQIVGLGLYSKFDYFNYVG 286

Query: 324 -LTNCILPHLDDYWDKFL---C-------LSHMTCK----------LFHVVQGMVQLDSE 362
            + NC   +L D++  F+   C       L H+                +V+  +  DS 
Sbjct: 287 KVINC--SNLLDFFSNFMEVGCHFIRNTFLGHLYNSSNKHNYFRSIYLRLVENKIFKDSS 344

Query: 363 D----SIMLQEIMTGGSLYLQLLKKEKS---GTSAVLKESDIYAAFRASSIESAMTNFLA 415
           D    +I L+ I+ G    L L K   +    +S  LK++    + + S+  S   +F +
Sbjct: 345 DNLNLTINLEYILPGDVCTLALFKSAMTIIFRSSLKLKDNINKNSMKNST--SFSKDFYS 402

Query: 416 TGNVSAGKNSTLQLMQASGFV--------------IMAENINRMRYMSHFRAVHRGSYFQ 461
             N++    S ++++ + G +              ++ E  N   Y S+F  VHRG YF+
Sbjct: 403 YTNINKKIFSRIKIIISVGHLKDLVSHSSYENGNSVLLEKSNMSCYFSNFDLVHRGQYFK 462

Query: 462 EMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVL 518
           + ++  PR +  D+ G++CPV TPDG   GL+NHL+    IS   E+        I   L
Sbjct: 463 KSQNIYPRLVSLDSLGYLCPVQTPDGASSGLINHLSLLTAISIDCEFDDLNSNFFIQEFL 522

Query: 519 VSLGMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV-----GEKI 572
           +S+  LP+ + ++ +  E  +   L+  ++G     +    +     LK +     G  +
Sbjct: 523 LSINFLPIESKIVGTSFENLISAGLNNMLIGLFFHSLLNEKIRFYHFLKSIRLYDNGRNL 582

Query: 573 --PKSLEIVYLKRPEKGMGLY----PG---LYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
               S E   LK  +     +    PG   +  +T   R LR +   ++ + E+IG  E 
Sbjct: 583 FLNHSFENQKLKIFDTEAAYFTPSVPGNEMIQFYTNANRPLRLLKLYSSCSFEFIGMNE- 641

Query: 624 VFMDICITMKEAYPGIT----THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
            F+++ +   +++        TH++L     LS  A+LIP  + NQSPRN+YQCQM KQ 
Sbjct: 642 -FINLSVKWLDSFSSQKFFDKTHQDLGNIALLSFTASLIPFWNHNQSPRNIYQCQMSKQA 700

Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
           +G    N  +    K+  L  P    F+  +         P G N I+++ S +  DMED
Sbjct: 701 IGAGLENSMFCQDTKVMFLYYPQKYLFKKFNRIITRRGLLPYGNNIIISIGSNSQNDMED 760

Query: 740 AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
           A +LNK S + G  H  I K +        N Y  E     +  +     +   ++  + 
Sbjct: 761 ACVLNKFSSQNGLFHTIILKKV------KQNNYLIEKDKEKIALTKNIRSLLNSLIINKS 814

Query: 800 LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTC 859
           +R++  +++     F     NK                K+ E            N +   
Sbjct: 815 VRNLCHNRFILSSIFNYTKKNK---------------VKVQEY-----------NNFDQF 848

Query: 860 RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
            Y GKE+     V+  + F     +T N       I RN  VGDK AS  GQK + S   
Sbjct: 849 TYFGKEK-----VKSKTRFKFSLEITKN-------ITRNILVGDKLASLHGQKSVVSTLI 896

Query: 920 PAEDLPFT-DSGLVPDIVFNPHGFPSRMTIGFL 951
             EDLPF+   G++P++  NPH FPSRMTIG L
Sbjct: 897 SREDLPFSFFDGIIPEVSLNPHSFPSRMTIGML 929


>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
          Length = 906

 Score =  200 bits (509), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 177/641 (27%), Positives = 280/641 (43%), Gaps = 123/641 (19%)

Query: 374 GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
           G L+  L +K      A +       K+ ++  A +A ++ S +   LATGN        
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWG------ 354

Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
            Q   A     +++ +NR+ +   +SH R ++     +E + ++PRQL    WG +CP  
Sbjct: 355 -QANAAGTRAGVSQVLNRLTFASTLSHLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAE 412

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           TP+G  CGL+ +L     I+    +  + +      +     ++P +  IP QA  + ++
Sbjct: 413 TPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAV--IP-QATKIFVN 469

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG  + +    LV  LR+L+    ++  + E+  ++           L L+T  GR 
Sbjct: 470 GCWVG--IHRNPDLLVKTLRLLR---RRVDVNTEVGVIRDIR-----LKELRLYTDYGRC 519

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICITM-- 632
            RP+  +                             A G IE++ T E+    I +T+  
Sbjct: 520 SRPLFIVEKQRLLIKKKDIRVLQQRETQEEGWHDLVAKGFIEYVDTEEEETTMISMTISD 579

Query: 633 --------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
                   +EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG   
Sbjct: 580 LVSARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYV 639

Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
            N++ +     Y L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N
Sbjct: 640 TNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMN 699

Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           +SS +RGF     F+S+F      +  Y  E    G                        
Sbjct: 700 QSSIDRGF-----FRSLF------FRSYRDEEKKMGT----------------------- 725

Query: 805 SDKWQTKDYFGRDPANKALE------DKLGPDGLVYVGAKLNERDPMY---SYWKESENR 855
                 K+ FGR      +       DKL  DGL   G +++  D +    S   + E++
Sbjct: 726 ----LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQ 781

Query: 856 YVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAG 910
             T RY+ + +    +    SG  +   +T N     ++  R++  R P +GDKF+SR G
Sbjct: 782 GQTSRYT-RRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHG 840

Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           QKG   + +  ED+P+T  G+ PDI+ NPH  PSRMTIG L
Sbjct: 841 QKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQL 881



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V      K       T T+E     +G+VPIML+S  C + 
Sbjct: 6   FPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTVY 65

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 66  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 111


>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
           polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
          Length = 1196

 Score =  200 bits (508), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 267/610 (43%), Gaps = 107/610 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A R+  I   +   LATGN    K +     QA   V  ++ +NR+ +   +S
Sbjct: 445 KDFNLELAIRSQIITDGLKYSLATGNWGDQKKAN----QARPGV--SQVLNRLTFASTLS 498

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPS 508
           H R ++     ++ + + PRQL    WG ICP  TP+G   GL+ +L     IS    PS
Sbjct: 499 HLRRLN-SPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPS 557

Query: 509 KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
            +L      L    M  L  +  S   +   + ++G  VG  +      L+  LR L+  
Sbjct: 558 PIL----EFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVG--IHSSPDHLMGTLRKLRRQ 611

Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------------- 614
            + I   + ++   R ++       + ++T  GR+ RP++ +  G               
Sbjct: 612 VDVIVSEVSMIRDYRDQE-------IRIYTDAGRICRPLVIVEKGKLLLKRSHIELLKDK 664

Query: 615 ---------------IEWIGTFEQVFMDICITMKEAYPGIT-----THRELSKTDFLSNL 654
                          +E+I T E+  + I +   E    +      TH E+  +  L   
Sbjct: 665 AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCKTHTHCEIHPSMILGIC 724

Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
           A++IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P  P       + L
Sbjct: 725 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYL 784

Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
                P G NAIVA+ +YTGY+ ED++I+N+S+ +RGF     F+S F      Y  Y  
Sbjct: 785 RFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGF-----FRSEF------YRTYKD 833

Query: 775 ETMYSGVDGSMMQAQIFF--GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
           +    G+D      ++F      + Q +RH                   A+ DKL  DGL
Sbjct: 834 QETRHGMD----LEEVFEKPNPQNCQGMRH-------------------AIYDKLDDDGL 870

Query: 833 VYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
           +  G +++  D +          E E      RY+ K +  V + R   G  +   VT N
Sbjct: 871 IAPGTRVSGDDVLIGKTITLPENEDEMEGGQRRYT-KRDASVFMRRSEYGIVDQVMVTWN 929

Query: 888 ------CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                 C  +  R  + P VGDKFASR GQKG C +++  ED+PFT  G+ PDI+ NPH 
Sbjct: 930 NEGNKFCK-VRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 988

Query: 942 FPSRMTIGFL 951
            PSRMTIG L
Sbjct: 989 IPSRMTIGHL 998



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY + G E MY+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1034 EYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSQ 1079



 Score = 46.2 bits (108), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSW---DGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPAQ 186
           P +AR     Y+ P  V V       + +      K+ +G++PIML+S  C L  ++   
Sbjct: 128 PNDARLRNLTYAAPLYVDVMKKIIRDETEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRD 187

Query: 187 LIERGEHPDEWGGYFIVGGHEKLV 210
           L E  E P + GGYFI+ G EK++
Sbjct: 188 LAELNECPLDPGGYFIINGSEKVL 211


>gi|159119582|ref|XP_001710009.1| DNA-directed RNA polymerase subunit B' [Giardia lamblia ATCC 50803]
 gi|157438127|gb|EDO82335.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
          Length = 1238

 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 183/661 (27%), Positives = 281/661 (42%), Gaps = 117/661 (17%)

Query: 355  GMVQLDSEDSIMLQEIMTGGSL--------YLQLLKKEKSGTSAVLKES----------D 396
            G+++ DS+D +  ++I T G L        +  LL        +VL+            D
Sbjct: 434  GVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMVRKVDSVLRSDRNRGTDLTNYD 493

Query: 397  IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
            I +    S I  A  + ++TGN    K    +       V +++ ++R+ Y+S    V R
Sbjct: 494  IVSLVDPSIITRAFNSAISTGNWKIEKIGVDR-------VGVSQILSRLSYISALGQVTR 546

Query: 457  --GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
               ++ + M+SS PR L     G  CP  TP+G   G++ +L+   +IS+    +    I
Sbjct: 547  LSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARISK---DESTDSI 603

Query: 515  PSVLVSLGMLPLTPVIQSIPEQ---ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK 571
              +L+S+G+  L               MV L+G I G I   +    +  LR  +  G  
Sbjct: 604  SKLLMSIGVEDLASCWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFIITLRTFRRRGY- 662

Query: 572  IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NIEWIGTFEQV 624
                  I YL         +  +Y+    GR  RP++ +  G       +IE +   ++ 
Sbjct: 663  ------ISYLTSFHFN-DEHQAVYINCDSGRACRPLLIVENGKLMLTRSDIELLVDNQKC 715

Query: 625  FMDICITMKEAYPGIT------------------THRELSKTDFLSNLANLIPMPDCNQS 666
            F+D+    K  Y  +                   TH E+     L  +  LIP P  NQS
Sbjct: 716  FVDLIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLLGYVVGLIPYPHHNQS 775

Query: 667  PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
            PRN YQC MGKQ  G    N   +    ++ L  P  P            +  P G NA 
Sbjct: 776  PRNCYQCSMGKQASGAIAFNQLERFETAMFLLDYPQQPLTSTKILKLTGYERLPAGQNAT 835

Query: 727  VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
            V V+SY+ +D+EDA+ILN+++ +RGF    I++S+  EL    N  G+++    VDG   
Sbjct: 836  VCVMSYSSFDIEDALILNRNAIDRGFGRCSIYRSVSTEL----NSIGSKS----VDGI-- 885

Query: 787  QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY 846
               I  G                 KD+  +     A+ED    DGL  VGA L   D + 
Sbjct: 886  -KDILLG---------------PPKDHLKQYEGYHAIED----DGLCAVGAHLKTGDIVI 925

Query: 847  SYWKESENRYVTC--RYSGKEEMCVEVVRMSSG---------FTEGGSVTPN-----CAY 890
                 ++ R++T     S   E    +++             + +   VT N        
Sbjct: 926  -----NKGRHITNIPGLSDGTEATASLIKAPESLKSPLETITYVDKVLVTTNGDGNMLIK 980

Query: 891  IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
            +  R  R P VGDKF+SR GQKG+C +  P  DLPFT  G+VPD++ NPHG+PSRMT+  
Sbjct: 981  VLTREPRRPEVGDKFSSRHGQKGVCGLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAK 1040

Query: 951  L 951
            L
Sbjct: 1041 L 1041



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPAQLI 188
           P E RQ    Y+ P  + V      K+   + KE+  G +PIML+S RC L N +  Q  
Sbjct: 100 PHECRQRNMTYAAPITIDVRCKASNKSSVQYYKEICIGYIPIMLRSNRCILTNKSRKQQA 159

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
              E PD+ GGYFIV G EK + LL      + I + RNA  N
Sbjct: 160 FLQECPDDPGGYFIVRGAEKSI-LLAEQMTMNRIVLGRNADGN 201



 Score = 48.1 bits (113), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 32/45 (71%)

Query: 767  SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            +G++Y G + +YSG+ G ++   IF G ++YQ+L+HMV DK  ++
Sbjct: 1081 AGFSYSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDKIHSR 1125


>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1304

 Score =  199 bits (507), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 267/610 (43%), Gaps = 107/610 (17%)

Query: 393  KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
            K+ ++  A R+  I   +   LATGN    K +     QA   V  ++ +NR+ +   +S
Sbjct: 553  KDFNLELAIRSQIITDGLKYSLATGNWGDQKKAN----QARPGV--SQVLNRLTFASTLS 606

Query: 450  HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS-EYIPS 508
            H R ++     ++ + + PRQL    WG ICP  TP+G   GL+ +L     IS    PS
Sbjct: 607  HLRRLN-SPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPS 665

Query: 509  KVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
             +L      L    M  L  +  S   +   + ++G  VG  +      L+  LR L+  
Sbjct: 666  PIL----EFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVG--IHSSPDHLMGTLRKLRRQ 719

Query: 569  GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN-------------- 614
             + I   + ++   R ++       + ++T  GR+ RP++ +  G               
Sbjct: 720  VDVIVSEVSMIRDYRDQE-------IRIYTDAGRICRPLVIVEKGKLLLKRSHIELLKDK 772

Query: 615  ---------------IEWIGTFEQVFMDICITMKEAYPGIT-----THRELSKTDFLSNL 654
                           +E+I T E+  + I +   E    +      TH E+  +  L   
Sbjct: 773  AYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCKTHTHCEIHPSMILGIC 832

Query: 655  ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
            A++IP PD NQSPRN YQ  MGKQ MG    N+  +       L  P  P       + L
Sbjct: 833  ASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYL 892

Query: 715  DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
                 P G NAIVA+ +YTGY+ ED++I+N+S+ +RGF     F+S F      Y  Y  
Sbjct: 893  RFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGF-----FRSEF------YRTYKD 941

Query: 775  ETMYSGVDGSMMQAQIFF--GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGL 832
            +    G+D      ++F      + Q +RH                   A+ DKL  DGL
Sbjct: 942  QETRHGMD----LEEVFEKPNPQNCQGMRH-------------------AIYDKLDDDGL 978

Query: 833  VYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
            +  G +++  D +          E E      RY+ K +  V + R   G  +   VT N
Sbjct: 979  IAPGTRVSGDDVLIGKTITLPENEDEMEGGQRRYT-KRDASVFMRRSEYGIVDQVMVTWN 1037

Query: 888  ------CAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
                  C  +  R  + P VGDKFASR GQKG C +++  ED+PFT  G+ PDI+ NPH 
Sbjct: 1038 NEGNKFCK-VRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHA 1096

Query: 942  FPSRMTIGFL 951
             PSRMTIG L
Sbjct: 1097 IPSRMTIGHL 1106



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY + G E MY+G  G  + +QIF G  +YQRL+HMV DK  ++
Sbjct: 1142 EYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSR 1187



 Score = 45.4 bits (106), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSW---DGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPAQ 186
           P +AR     Y+ P  V V       + +      K+ +G++PIML+S  C L  ++   
Sbjct: 236 PNDARLRNLTYAAPLYVDVMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRD 295

Query: 187 LIERGEHPDEWGGYFIVGGHEKLV 210
           L E  E P + GGYFI+ G EK++
Sbjct: 296 LAELNECPLDPGGYFIINGSEKVL 319


>gi|392577194|gb|EIW70323.1| hypothetical protein TREMEDRAFT_29095 [Tremella mesenterica DSM
           1558]
          Length = 1128

 Score =  199 bits (506), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 170/603 (28%), Positives = 255/603 (42%), Gaps = 97/603 (16%)

Query: 384 EKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
           EK   +  L  S+I A     SI SA    ++TGN S  +     + +A     +   ++
Sbjct: 395 EKPNRATPLDASNILAQ-NGDSITSAFVRSISTGNWSLKR---FHVERAG----VTHVLS 446

Query: 444 RMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ 501
           R+ +++    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ +L     
Sbjct: 447 RLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTH 506

Query: 502 ISEYIPSKVL--------AQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
           I+  +P   L        AQ  +    +GM               ++ ++G ++G  L  
Sbjct: 507 ITTDVPEGPLVDYAFTYGAQDINTFTGVGMYG---------RGVYLIQINGSLIG--LTN 555

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN---- 609
                V   R L+            +Y+    K       +Y+ +  GR+ RP++     
Sbjct: 556 HPKKFVQTWRKLRRAARF--SEFVSIYMNHHHKI------IYIASDGGRICRPMIIVENG 607

Query: 610 ----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                 L +G +E++   E+    I     E   G TTH E+  
Sbjct: 608 RPRVTSEHIRLLKEGKVTFDHFLRSGLVEYLDVNEENDSLIACYEHEIEEG-TTHLEIEP 666

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ +G    N   +    LY +  P  P  +
Sbjct: 667 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLMTYPQQPMVK 726

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + ++ D  P G NA VAV+S++GYD+EDA+ILNK+S +RGF    + K   I +  
Sbjct: 727 TKTIELIEYDKLPAGQNATVAVMSFSGYDIEDALILNKASVDRGFGRCHVLKKQTIPMRH 786

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
             N     T Y                          SD  + + Y   D A+       
Sbjct: 787 FQNGTSERTAYP-------------------------SDPLRPEAYASVDKADGVTS--- 818

Query: 828 GPDGLVYVGAKLNERD-PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
            P   VY G  L  R+ P+ +  +    +    + +       E V++       G  +P
Sbjct: 819 -PGSTVYQGDVLVHRETPIDT--RGPMTQAAVFKATPITHKTPEPVQIDKVMLTEGEDSP 875

Query: 887 NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRM 946
               I  R  R P +GDKF+SR GQKG+C +  P  D+PF D G+ PDI+ NPHGFPSRM
Sbjct: 876 -LLKILTRQTRQPELGDKFSSRHGQKGVCGLIVPQTDMPFNDQGICPDIIMNPHGFPSRM 934

Query: 947 TIG 949
           T+G
Sbjct: 935 TVG 937



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+    V + ++++ K        +G++P+ML+S  CHL+  +  +L   
Sbjct: 97  PMECRLRDISYAAEIRVDIEYTYEDKLKKQKGILIGKLPVMLRSDLCHLKGKSERELARM 156

Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
           GE P + GGYF+V G EK++ +     +N  I ++
Sbjct: 157 GECPKDPGGYFVVKGTEKVILVQEQLSKNRIIVMR 191



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E+G++Y G + + SG+ G  ++A ++FG ++YQ+L+HMV DK   +    R    + 
Sbjct: 971  ILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARPTGPRANLTRQ 1030

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD +  Y              G  ++ +E + +SS   E  
Sbjct: 1031 PTEGRSKDGGLRLGEM--ERDCLIGY--------------GATQLLLERLMISSDAFE-T 1073

Query: 883  SVTPNCAYIGY 893
             V   C  +GY
Sbjct: 1074 QVCETCGLLGY 1084


>gi|520511|gb|AAA50226.1| RNA polymerase II, second largest subunit, partial [Crassostrea
           gigas]
          Length = 859

 Score =  199 bits (506), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 191/694 (27%), Positives = 298/694 (42%), Gaps = 119/694 (17%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  +L     G  ++D  D    + +   G    
Sbjct: 149 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAAIGRREVDDRDHYGNKRLDLAGPLLA 208

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+ ++  A +   I   +   LATGN    K +  
Sbjct: 209 FLFRGLFRNLMKEVRLYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKA-- 266

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R ++     ++ + + PRQL    WG ICP  T
Sbjct: 267 --HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLARPRQLHNTQWGMICPAET 321

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G+  GL+ +L     IS    PS +L      L    M  L  V  S  + A  + ++
Sbjct: 322 PEGSAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEVSPSAIQDATKIFVN 377

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  LR L+   + I   + ++   R  +       + ++T  GR+
Sbjct: 378 GCWVGIHRD--PEQLMNTLRKLRREMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 428

Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICITMKE 634
            RP++ +                             A+G +E+I   E+  + + +T  +
Sbjct: 429 CRPLLIVENQKLLLKQSHIKQLKQREYNNYSWQDLVASGVVEYIDPLEEESIMLAMTPDD 488

Query: 635 ------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
                  Y    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+ 
Sbjct: 489 LSDKDVQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 548

Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
            +     + L  P  P       + L     P G N+IVA+ SYTGY+ ED++I+N S+ 
Sbjct: 549 VRMDTLAHGLLYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIINASAI 608

Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
           ERGF                +  Y       G+D    Q +IF              +K 
Sbjct: 609 ERGFF-----------RSFFFRSYKDSESKKGLD----QEEIF--------------EKP 639

Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY-----WKESENRYVTCRYSG 863
             ++  G     +A+ DKL  DG++  G +++  D +          E E    T R++ 
Sbjct: 640 TRENVQG---MRQAVYDKLDEDGIISPGIRVSGDDVLIGKTLTLPANEDELEGTTKRFT- 695

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFASRAGQKGICSV 917
           K +  V + R  +G  +   +T N      C  I  R  + P +GDKFASR GQKG C +
Sbjct: 696 KRDASVFMRRSETGIIDQVMITLNQEGYKFCK-IRVRTVKTPQIGDKFASRHGQKGTCGI 754

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            +  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 755 TYRQEDMPFTCEGITPDIIINPHAVPSRMTIGHL 788


>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1
           ERTm2]
          Length = 1137

 Score =  199 bits (506), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 242/988 (24%), Positives = 391/988 (39%), Gaps = 170/988 (17%)

Query: 59  DKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVP 118
           D  NEF+ +       +   ++DE   + +   +P   E   +   +   +  +S+P   
Sbjct: 28  DSFNEFIQS-------TMQEVVDENSKIVLMAHSPTGEEEKARKYTIEFKQIYVSKPPTI 80

Query: 119 AGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWS---WDGKAGGTFTKE--VGRVPIMLK 173
             P G   +  +P +AR     YS    + +  +    D +      K   +G +PIML+
Sbjct: 81  TEPDG-RTSPMFPNDARVRSLTYSASLYIDIVKTEHIGDEEVESRTYKRMPIGSIPIMLR 139

Query: 174 SKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR--NHPIAIKRNAWKN 231
           S  C   N     +    E   + GGYFIV G EK+   LI + R  ++ + I + A  +
Sbjct: 140 SLYCVYSNTDDKDMNRIEECTYDQGGYFIVNGSEKV---LIAHERMASNLVYIFKKAPPS 196

Query: 232 RGLLFSDL------------GVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS----- 274
             L  +++             + IR V R     +   +F+     R +  H K      
Sbjct: 197 PYLYTAEMRSVPDHGLRLPSSLTIRLVARSSDNASGGGYFL-----RALLPHAKQDVPVV 251

Query: 275 -----------------MC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYD 310
                            +C       +L M++   EE    Q D  V    I K      
Sbjct: 252 VIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEAFVIQ-DQGVALDYIGKRVAPAG 310

Query: 311 LRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIM 366
                 ++    +     LPH+         K   L +   KL  V  G    +  D   
Sbjct: 311 FSKEKRIKFAKDLFQREFLPHVGTKEFCETKKAYLLGYTINKLLMVALGRRSEEDRDHYG 370

Query: 367 LQEIMTGG----SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLA 415
            + +   G     L+  L KK  +  +  +       K+ ++    R S++ + +   LA
Sbjct: 371 RKRLDLAGPLMAGLFRMLFKKMSNELAKYMQRCIDGNKDLNLIVGLRTSTLTNGLRYSLA 430

Query: 416 TGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLR 472
           TGN      S    MQA   V  A+ +NR  Y   +SH R V+     ++ + ++PRQL 
Sbjct: 431 TGNWGEQSKS----MQARAGV--AQVLNRYNYISTLSHLRRVNT-PIGRDGKLAKPRQLH 483

Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQS 532
           +  WG +CP  TP+G  CGL+ +      IS    S ++ ++       G+  ++P   +
Sbjct: 484 SSHWGMVCPAETPEGQACGLVKNFALMSHISVGSNSSIVVELLEECGLEGLEEVSPTAIA 543

Query: 533 IPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYP 592
               A  V+++G  VG  + +    L+  L+ L+  GE +   + IV   R ++      
Sbjct: 544 ---GATKVLVNGSWVG--VHRSPDDLIGTLKYLRRSGE-LSSEIGIVRDLREKE------ 591

Query: 593 GLYLFTGPGRMLRPVMNLAAG----------NIEWIGTFEQVFMDICITMKEAYPGIT-- 640
            + + T  GR  RP+  +  G          N     T++++  D C+   +     T  
Sbjct: 592 -IRINTDGGRACRPLFIVEKGVLRIEHFLEANRHRAFTWDELMADGCVEFLDVEEEETAM 650

Query: 641 ---------------THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
                          TH E+     L   A+++P PD NQSPRN YQ  MGKQ MG    
Sbjct: 651 IAVKTSDLRNTEIMYTHCEIQPATMLGVCASVVPFPDHNQSPRNTYQSAMGKQAMGMYAT 710

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +       L  P  P       + L     P G NA+VA+  Y+GY+ ED++++N+
Sbjct: 711 NFLMRMDSLSNVLCYPQKPLVITQSMNFLQFRELPSGQNAMVAIACYSGYNQEDSVVMNR 770

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            + +RG     +F+S F      Y  Y           S M++          R +    
Sbjct: 771 GAVDRG-----LFRSFF------YRTY-----------SDMES----------RTKPEEQ 798

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY--VTCRYSG 863
           + +   D         A  +KL  DGLV  G +++  D +      + + Y   +    G
Sbjct: 799 ECFMKPDRRSVQRMKNANYEKLDIDGLVPPGTRVSGEDVLIGKAVSTPDGYKDASTTMRG 858

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
            E   V+ V ++   T+ G      A I  R  R P +GDKFASR GQKG   +    ED
Sbjct: 859 TESGVVDRVILT---TKDGY---RYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPED 912

Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 913 MPFTADGITPDIIINPHAIPSRMTIGHL 940



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
            GY   G E MYSG  G  M++QIF G  +YQRL+HMV+DK   + +
Sbjct: 977  GYQKRGFEVMYSGFTGRKMRSQIFIGPTYYQRLKHMVADKIHARAH 1022


>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1213

 Score =  199 bits (506), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 179/634 (28%), Positives = 278/634 (43%), Gaps = 135/634 (21%)

Query: 393  KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
            K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 435  KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 487

Query: 450  HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS------ 503
            H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 488  HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 546

Query: 504  ---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
               E++          +++S  +  ++P +  IP QA  + ++G  +G   D     LV 
Sbjct: 547  PILEFLEEWGTENFEVLVISF-IKEISPAV--IP-QATKIFVNGCWMGIHRD--PDMLVR 600

Query: 561  KLRMLK---------IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL- 610
             LR L+         +V   +   + +V   R ++       L ++T  GR  RP+  + 
Sbjct: 601  TLRKLRRRFSAEGFDVVQVDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVD 653

Query: 611  -----------------------------AAGNIEWIGTFEQVFMDICITM--------- 632
                                         + G IE+I T E+    I +T+         
Sbjct: 654  KQRLLIKKKDIHSLQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLN 713

Query: 633  -KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
             +EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N++++ 
Sbjct: 714  PEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRM 773

Query: 692  VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
                Y L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RG
Sbjct: 774  DTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRG 833

Query: 752  FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            F     F+S+F      +  Y  E    G                              K
Sbjct: 834  F-----FRSLF------FRSYRDEEKKMGT---------------------------LVK 855

Query: 812  DYFGR-DPANK-----ALEDKLGPDGLVYVGAKLNERDPMY---SYWKESENRYVTCRYS 862
            + FGR D AN         DKL  DGL   G +++  D +    +   + E +    RYS
Sbjct: 856  EDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEEQQGQAARYS 915

Query: 863  GKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSV 917
             K +  + +    +G  +   +T N     ++  R++  R P +GDKF+SR GQKG   +
Sbjct: 916  -KRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGM 974

Query: 918  KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             +  ED+P+T  G+ PDI+ NPH  PSRMTIG L
Sbjct: 975  TYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 1008



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V+        DG+       FTK  +G+VPIML+S  C L 
Sbjct: 114 FPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 173

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 174 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 219



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1045 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1094


>gi|218884686|ref|YP_002429068.1| DNA-directed RNA polymerase subunit B [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766302|gb|ACL11701.1| DNA-directed RNA polymerase, subunit B [Desulfurococcus
           kamchatkensis 1221n]
          Length = 1149

 Score =  199 bits (506), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 185/713 (25%), Positives = 306/713 (42%), Gaps = 141/713 (19%)

Query: 320 CDYMLTNCILPHL------DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTG 373
            + +L   +LPH+      +    K + +  M  ++  +  G  + D +D    + +   
Sbjct: 297 AERLLDERLLPHIGIDSSPETRLKKAVFIGQMISRIIELQLGYREPDDKDHYRNKRLKLA 356

Query: 374 GSLYLQLLKKEKSGTSAVLKES-----------DIYAAFRASSIESAMTNFLATGNVSAG 422
           G +   LL+    G +  +KE            D+   F+ S I   + + +ATGN   G
Sbjct: 357 GDMLAVLLRAAMMGFAREIKEGIEKQLAKTKKIDLKMVFKPSIITDRIQHAMATGNWPGG 416

Query: 423 KNSTLQLMQASGFVIMAENINRMRYMSHFRAV----HRGS-YFQEMRSSEPRQLRTDAWG 477
           +    QL+         +  N +  +SH R V     RG  +F      E R+L    WG
Sbjct: 417 RTGVSQLL---------DRTNMLSTLSHLRRVVSPLARGQPHF------EARELHGTQWG 461

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTP--------- 528
            +CP  TP+G   GL+ +L     +S  I  K   +I ++L  +G++P+           
Sbjct: 462 RMCPFETPEGANIGLVKNLALMTNVSVGIDDK---EIEALLYRIGVVPIVSTRTIDGKIH 518

Query: 529 --VIQSIPEQA-------------LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIP 573
             +I  I E                 V L+G+++GY  D     L   +R L+  G KI 
Sbjct: 519 KGLIDMISEDVSKASEISEKYSGWCKVFLNGKLIGYHKD--GEELARTIRSLRRSG-KIS 575

Query: 574 KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NIEWIGTFEQVFM 626
             + + Y+     G      + + T  GR+ RP++ +  G       +++ +   +  F 
Sbjct: 576 SEVNVAYI-----GNKYIKEVVVNTDSGRIRRPLIVIENGVPKLTREHVKLLSEGKLTFE 630

Query: 627 DICIT----------MKEAYPGIT--------THRELSKTDFLSNLANLIPMPDCNQSPR 668
           D+              + AY  +         TH E+     L   A++IP P+ NQSPR
Sbjct: 631 DLVKQGIVEYLDPDEEENAYIALQPSDVTAEHTHLEIWIPAILGITASIIPYPEHNQSPR 690

Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
           NMYQ  M KQ++G    N++ +   + + L  P  P       + +  +  P G N +VA
Sbjct: 691 NMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQRPLVETRMMNVIGYNERPAGQNMVVA 750

Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
           V++YTGY+MEDA+I+N+SS ERG A    F+ ++  +E  Y Y G            +Q 
Sbjct: 751 VLTYTGYNMEDALIMNRSSVERGLARSTFFR-LYTTVE--YKYPGG-----------IQD 796

Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
           +I     + +  R                   KA E KL  DG+V    +++  D +   
Sbjct: 797 EITIPSTNVRGYR-----------------GQKAYE-KLEEDGIVAPETQVSGGDVLIG- 837

Query: 849 WKESENRYV-TCRYS----GKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RN 898
            K S  R++ T  Y      +++  + +     G  +   +T +      I  R++  R 
Sbjct: 838 -KVSPPRFLSTQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGNKLIKVRVRDLRI 896

Query: 899 PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           P +GDKFASR GQKG+  +  P  D+PFT+ G+ PD++ NPH FPSRMT+  L
Sbjct: 897 PELGDKFASRHGQKGVLGLLLPQYDMPFTEEGVTPDLIINPHAFPSRMTVAQL 949



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 9/141 (6%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  + E L   +E+   I   I    +KL I K  I  PK  +   GI  +K  P
Sbjct: 14  HLDSYERFIKEILPSILEEFKEI---IITNKIKLVIEKYRIDSPKWTSVE-GIEESKT-P 68

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVG--RVPIMLKSKRCHLRNLTPAQLIE 189
            E R     Y+ P  V+V    + ++G T  +E+    +P+MLKS    L  LTP +LIE
Sbjct: 69  MECRLRNLTYATPIYVSV--RIEDESGYTREQELKLMDLPVMLKSSIDPLSKLTPQELIE 126

Query: 190 RGEHPDEWGGYFIVGGHEKLV 210
            GE P + GGYFI+ G EK++
Sbjct: 127 NGEDPRDPGGYFIINGSEKVI 147



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY Y G E MY G  G +++  +F G+V+YQ+L HM SDK   +
Sbjct: 986  GYPYTGEEAMYDGRTGELIKTPVFIGIVYYQKLHHMASDKIHAR 1029


>gi|126465702|ref|YP_001040811.1| DNA-directed RNA polymerase subunit B [Staphylothermus marinus F1]
 gi|126014525|gb|ABN69903.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
           polymerase, subunit B' [Staphylothermus marinus F1]
          Length = 1156

 Score =  199 bits (505), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 185/719 (25%), Positives = 318/719 (44%), Gaps = 121/719 (16%)

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNC-ILPHLDDYWDKFLCLSHMTCKLFHVV 353
           +++  G+  +E+++   R L+E     Y+L +    P  +    K   +  M  KL  ++
Sbjct: 299 ARIAIGRPREERIRRAQRALDE-----YLLPHIGTEPTPEVRRKKAYFIGQMVNKLIELI 353

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------KSGTSAVLKES------DIYAAF 401
               + D +D    + +   G L  QL++        +   S++ +        D+    
Sbjct: 354 VDRRKPDDKDHYRNKRLKLAGDLLAQLVRHNLVTYFIREVKSSIERSYSKYGRLDLKLVI 413

Query: 402 RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
           +   +   + + +ATGN   GK    QL+         +  N M  +SH R V       
Sbjct: 414 KPGMLTDRILHAMATGNWPGGKTGVSQLL---------DRTNLMSTLSHLRRV-----VS 459

Query: 462 EMRSSEP----RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSV 517
            ++ ++P    R+L    WG +CP  TP+G   GL+ +L     +S  +P + +   P +
Sbjct: 460 PLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHVSVGVPEEHIE--PIL 517

Query: 518 LVSLGMLPLTPVIQSIPEQAL-------------MVMLDGRIVGYILDQIATSLVPKLRM 564
              LG+  L  +I+ I +                 V L+GR++GY  D     L  ++R 
Sbjct: 518 YRKLGVKNLDEIIEEIKKAITGEVEEYPDYTSWSRVYLNGRLIGYHPD--GKKLAQEIRN 575

Query: 565 LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NIEW 617
           L+  G KI   + + +++           +Y+ T  GR+ RP++ +  G       +I  
Sbjct: 576 LRRRG-KISVEVNVAHIRDEHLN-----EVYINTDAGRIRRPLLVVENGKLKLKPEHIAK 629

Query: 618 IGTFEQVFMDI----------CITMKEAYPGIT--------THRELSKTDFLSNLANLIP 659
           + + E  F D+              +EAY  +T        TH E+     +   A++IP
Sbjct: 630 LKSGEWKFSDLVKRGIIEYLDADEEEEAYIALTPDQITPEHTHMEIWTPAIMGITASIIP 689

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
             + NQSPRN Y+  M KQ++G    N++ +   + + L  P  P  +    +    +  
Sbjct: 690 YAEHNQSPRNSYEAAMAKQSLGLYSANFQQRMDTRGHLLHYPQKPLVQTRAMEVNGYNER 749

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P G N +VAV+S+TGY++EDA+I+NKSS +RG A    F+ ++  +E  Y Y G +    
Sbjct: 750 PAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFR-LYTTVE--YRYPGGQEDRI 806

Query: 780 GVDGSMMQAQIFFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKALEDKLGPDGLV---- 833
            +  S ++   + G   Y++L    +VS +   K           L  K+ P   +    
Sbjct: 807 MIPPSNVRG--YRGPKAYEKLDEDGIVSPETPVK-------GGDVLIGKISPPRFMTAQE 857

Query: 834 -YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
             VGA +  +D             V  R+   E+  V+VV +++       V      + 
Sbjct: 858 YTVGAGITRQDAS-----------VVTRHG--EKGIVDVVMVTTDIDGNRLVK-----VR 899

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKFASR GQKG+  +  P +D+PFT+ G+VPD++ NPH FPSRMT+G L
Sbjct: 900 VRDLRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGIVPDLIINPHAFPSRMTVGQL 958



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY   G ETMY G  G +++  IF G+V+YQ+L HMV+DK   +
Sbjct: 995  GYPMSGYETMYDGRTGEILKTPIFIGIVYYQKLHHMVADKIHAR 1038



 Score = 45.8 bits (107), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  + VA   +         ++  +P+MLKSK   L  +T  +L+  
Sbjct: 85  PLECRLRNFTYAVPIYLKVALQDETGIYKEQEIKLMDLPVMLKSKIDPLSKMTAEELVAI 144

Query: 191 GEHPDEWGGYFIVGGHEKLV 210
           GE P + GGYFI+ G EK++
Sbjct: 145 GEDPKDPGGYFIINGSEKVL 164


>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
 gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
          Length = 1204

 Score =  198 bits (504), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 238/959 (24%), Positives = 369/959 (38%), Gaps = 191/959 (19%)

Query: 130  YPTEARQTRSVYSGPFNVTVA-----------------WSWDGKAGGTFTKEV--GRVPI 170
            +P EAR     Y+ P  + +                  W    +  G   ++V  G+VPI
Sbjct: 101  FPQEARLRNLTYAAPLYIEMRQKTLHATDELDEAGEPIWRTVKEDEGNAVQKVHIGKVPI 160

Query: 171  MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN----RRNHPI 222
            ML+S  C L  L+  ++ +  E P + GGYFI+ G EK++    R+  N+     +  P 
Sbjct: 161  MLRSAFCILNKLSDQEIYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPS 220

Query: 223  AIK-----RNAWKNRGLLFSDLGVYIRSVKRDESATNN----------------VLHFVT 261
             I      R+A +  G   S   V +    ++ S  N                 V   + 
Sbjct: 221  PINFLAEIRSAVEKGGKTISQFQVKMFHRTKERSMGNVIKATIPYIKVDIPIWVVFRALN 280

Query: 262  NGSARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL 314
              S R +  H   +C       +L +++   ++G   Q + +V    I        L   
Sbjct: 281  VISDRDILDH---ICYESTDPQMLELLKPCIDDGFVIQ-EREVALDFIGNRGTTTGLNRE 336

Query: 315  NEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI 370
              V     +L   +LPH+         K     +M  +L        +LD  D    + +
Sbjct: 337  RRVRYAQEILQKELLPHVSMAEGSESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRL 396

Query: 371  MTGG----SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNV 419
               G     L+  L +K        L       K+ ++  A +  +I   +   LATGN 
Sbjct: 397  DLAGPLLAGLFRMLFRKMTKDVYRYLQKCVESNKDFNLNLAIKHHTISQGLKYSLATGNW 456

Query: 420  SAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSEPRQLRTDAWG 477
               K +       +    +++ +NR  Y S    + R +    +E + ++PRQL    WG
Sbjct: 457  GDQKKA------GAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 510

Query: 478  FICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA 537
             +CP  TP+G  CGL+ +L+    IS      + A +   L    +  L    +S     
Sbjct: 511  MVCPAETPEGQACGLVKNLSLMACIS---VGSISAPVIDFLQEWNLESLEENARSSEATF 567

Query: 538  LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLF 597
              V ++G  +G   D     LV  +R L+   + I + + +V   R ++       L ++
Sbjct: 568  TKVFVNGVWMGVHRD--PAKLVETIRRLR-RKDDISQEVSVVRDIREKE-------LRVY 617

Query: 598  TGPGRMLRP---VMN----------------------LAAGNIEWIGTFEQVFMDICIT- 631
            T  GR+ RP   V N                      +  G IE +   E+  + I +T 
Sbjct: 618  TDAGRVCRPLFIVENQSLLLEKHHVHALTQGAKWDSLVKQGIIELLDAEEEETVMIAMTP 677

Query: 632  --------------------------MKEAYPGITTHR----ELSKTDFLSNLANLIPMP 661
                                       K A+    TH     E+  +  L   A++IP P
Sbjct: 678  EDLENSRMTPEERAAQQAEEEVDMTATKVAHTMANTHTWTHCEIHPSMILGICASIIPFP 737

Query: 662  DCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPM 721
            D NQSPRN YQ  MGKQ MG    N+  +       L  P  P       + L     P 
Sbjct: 738  DHNQSPRNTYQSAMGKQAMGIFLTNFILRMDTMANILYYPQKPLATTRSMEYLKFRELPA 797

Query: 722  GTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
            G NAIVA++ Y+GY+ ED++I+N+SS +RG     +F+S++        Y G   M    
Sbjct: 798  GQNAIVAILCYSGYNQEDSVIMNQSSIDRG-----LFRSIY--------YRGYTDMEKKS 844

Query: 782  DGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNE 841
             G MM  + F        LR                       DKL  DGL+  G  +N 
Sbjct: 845  VG-MMPTEEFEKPSRDNTLR-----------------MKHGTYDKLEDDGLIAPGTGVNG 886

Query: 842  RDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN-----CAYIG 892
             D +         +SE      +   + ++   +    SG  +   +T N        + 
Sbjct: 887  EDIIIGKTAPIPPDSEELGQRTKNHTRRDVSTPLKSTESGIIDQVLLTTNEDGKKLIRVR 946

Query: 893  YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             R  R P +GDKFASR GQKG   + +  ED+PFT  G+VPDIV NPH  PSRMTIG L
Sbjct: 947  VRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAQGIVPDIVINPHAIPSRMTIGHL 1005



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            G+   G E MY G  G  +QAQ++ G  +YQRL+HMV DK  ++
Sbjct: 1042 GFQQRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSR 1085


>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score =  198 bits (504), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 173/615 (28%), Positives = 275/615 (44%), Gaps = 115/615 (18%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           KE ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 327 KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 379

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+    + 
Sbjct: 380 HLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAH 438

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
            + +      +     ++P +  IP Q+  + ++G  VG  + +    LV  LR L+   
Sbjct: 439 PILEFLEEWSTENFEEISPAV--IP-QSTKIFVNGCWVG--IHRNPELLVKTLRQLR--- 490

Query: 570 EKIPKSLEI-----VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL-------------- 610
            ++  + E+     ++LK           L L+T  GR  RP+  +              
Sbjct: 491 RQVDVNTEVGVIRDIHLKE----------LRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 540

Query: 611 ----------------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRE 644
                           A G IE++ T E+    I +T+          KEAY    TH E
Sbjct: 541 LQLRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARVNPKEAYSETYTHCE 600

Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
           +  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N++ +     Y L  P  P
Sbjct: 601 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 660

Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
                  + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F  
Sbjct: 661 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLFFR 715

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
                +Y   E       G++++    FG  + +    M    +                
Sbjct: 716 -----SYRDEEKKM----GTLIKED--FGRPNRENTMGMRHGSY---------------- 748

Query: 825 DKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
           DKL  DGL   G +++  D +        + +++    RY+ + +    +    SG  + 
Sbjct: 749 DKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQASRYT-RRDHSTSLRHSESGMVDQ 807

Query: 882 GSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
             +T N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+
Sbjct: 808 VLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDII 867

Query: 937 FNPHGFPSRMTIGFL 951
            NPH  PSRMTIG L
Sbjct: 868 VNPHAIPSRMTIGQL 882



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGT--------FTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V      K            FTK  +GRVPIML+S  C L 
Sbjct: 6   FPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVAETQDFTKVFIGRVPIMLRSSYCTLY 65

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 66  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 111


>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  198 bits (504), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 180/647 (27%), Positives = 278/647 (42%), Gaps = 134/647 (20%)

Query: 374 GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
           G L+  L +K      A +       KE ++  A +A +I S +   LATGN        
Sbjct: 273 GGLFRMLFRKLTRDVRAYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWG------ 326

Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
            Q   A     +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG +CP  
Sbjct: 327 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAE 384

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           TP+G  CGL+ +L     I+    +  + +      +     ++P +  IP QA  + ++
Sbjct: 385 TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAV--IP-QATKIFVN 441

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEI-----VYLKRPEKGMGLYPGLYLFT 598
           G  VG  + +    LV  LR L+    ++  + E+     ++LK           L L+T
Sbjct: 442 GCWVG--IHRNPELLVNTLRKLR---RQVDVNTEVGVIRDIHLKE----------LRLYT 486

Query: 599 GPGRMLRPVMNL------------------------------AAGNIEWIGTFEQVFMDI 628
             GR  RP+  +                              A G IE++ T E+    I
Sbjct: 487 DYGRCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGYIEYVDTEEEETTMI 546

Query: 629 CITM----------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
            +T+          +EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ
Sbjct: 547 SMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQ 606

Query: 679 TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
            MG    N++ +     Y L  P  P       + L     P G NAIVA+  Y+GY+ E
Sbjct: 607 AMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQE 666

Query: 739 DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
           D++I+N+SS +RGF     F+S+F      +  Y  E    G                  
Sbjct: 667 DSVIMNQSSIDRGF-----FRSLF------FRSYRDEEKKMGT----------------- 698

Query: 799 RLRHMVSDKWQTKDYFGRDPANKALE------DKLGPDGLVYVGAKLNERDPMYSYW--- 849
                       K+ FGR      +       DKL  DGL   G +++  D +       
Sbjct: 699 ----------LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPI 748

Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDK 904
            + E +    RY+ + +    +    SG  +   +T N     ++  R++  R P +GDK
Sbjct: 749 AQEEPQGQASRYT-RRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDK 807

Query: 905 FASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           F+SR GQKG   + +  ED+P+T  G+ PDI+ NPH  PSRMTIG L
Sbjct: 808 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 854



 Score = 48.5 bits (114), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 161 FTKE-VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           FTK  +G+VPIML+S  C L   +   L E GE P + GGYFI+ G EK++        N
Sbjct: 17  FTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 76

Query: 220 HPIAIKR 226
           H    K+
Sbjct: 77  HVYVFKK 83


>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1166

 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 192/693 (27%), Positives = 296/693 (42%), Gaps = 118/693 (17%)

Query: 323 MLTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-- 376
           +L   +LPH+         K   L +M  +         +LD  D    + +   GSL  
Sbjct: 332 ILQKEMLPHIGVGPQCEQAKAFFLGYMVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVA 391

Query: 377 ------YLQLLKKEKSGTSAVLKESDIYAAFRASSIE---SAMTNFLATGNVSAGKNSTL 427
                 + QL KK     + ++  +  +       +E   S +   LATGN    K +  
Sbjct: 392 YLFRTLFKQLTKKLTRKVTDLVNRNHKFMVITLLDVEILGSGLRYSLATGNWGDQKKA-- 449

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              +A   V  ++ +NR+ +   +SH R ++     +  + ++PRQL    WG+ICP  T
Sbjct: 450 --HEARAGV--SQVLNRLTFASTLSHLRRLN-SPIDRTGKIAKPRQLHNTHWGYICPAET 504

Query: 485 PDGTPCGLLNHLTTNCQI---SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVM 541
           P+G   GL+ +L+    +   S+  P   L    S L  L  LP    I++    A  V 
Sbjct: 505 PEGHAVGLVKNLSLMASLTVGSDDTPVHDLLG-ASGLDYLDRLPSRSAIKT----ATKVF 559

Query: 542 LDGRIVGYILDQIATSLVPKLRM-LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
           ++G  VG  +      LV  +R  L      +   + I    R  +       +++ T  
Sbjct: 560 VNGNWVG--IHSHPDELVTTMRQYLLDAAHSVASEVSIFRNIRERE-------VHIVTDS 610

Query: 601 GRMLRP--------------------VMNL-----------AAGNIEWIGTFEQ----VF 625
           GR  RP                    VM L             G +E+I   E+    + 
Sbjct: 611 GRTTRPLLIVNKDDANRCRFALKNSHVMALRNDQMSWTHLVQRGVVEYIDVNEEETTMIA 670

Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
           MD     + +Y    TH E+  +  LS  A++IP PD NQSPRN YQ  MGKQ MG    
Sbjct: 671 MDQGTLEETSYCNTYTHCEIHPSMILSICASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 730

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N+  +     + L  P  P  +    + L     P G NAIV +++YTGY+ ED++I+N+
Sbjct: 731 NFHVRMDTLAHVLYYPQRPLVQTRSMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNR 790

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
            S ERG     +F+S+F       +Y  +E                    H +R   +  
Sbjct: 791 YSVERG-----LFRSVFYR-----SYAASE--------------------HSERGEIIKI 820

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSG 863
           DK   ++  G   AN    DKL  DG+V  G +++  D +     E     R  +     
Sbjct: 821 DKPSRENCIGMRRANY---DKLEDDGIVAPGIRVSGDDAIVGRLLELPEATRQASGGRFE 877

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVK 918
           K +  + +    SG  +G  ++ N     ++  R++  R P +GDKFASR GQKG C ++
Sbjct: 878 KRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFASRHGQKGTCGMQ 937

Query: 919 WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +  ED+PF  SG+VPDI+ NPH  PSRMTIG L
Sbjct: 938 YAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHL 970



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 764  ELESGYNY--YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            ++  GYN+  YG E MY+G  G  MQAQ+F G  +YQRL+HMV DK   +
Sbjct: 1001 DILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKHMVDDKIHAR 1050



 Score = 41.2 bits (95), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 24/158 (15%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEP---KVPAGPVGI---- 124
            + SFD  +   +   +++  PIE +      +L  +   I EP    +  G  G     
Sbjct: 30  QLDSFDHFITYTVQKIIKNSPPIEVQ-----GRLQYLSNEIEEPPKHTISFGQAGFALPQ 84

Query: 125 ------HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK--AGGTFTKE---VGRVPIMLK 173
                 +++  +P + R     Y       +  + + K    G  T     +G+VP+ML+
Sbjct: 85  HKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITHTVEQKNPETGEVTTTPALLGKVPMMLR 144

Query: 174 SKRCHLRNL-TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           SK C L  + T     +  E P + GGYFI+ G EK++
Sbjct: 145 SKYCTLNKMETFRDFYDINECPLDPGGYFIINGSEKVL 182


>gi|389860840|ref|YP_006363080.1| DNA-directed RNA polymerase subunit B' [Thermogladius
           cellulolyticus 1633]
 gi|388525744|gb|AFK50942.1| DNA-directed RNA polymerase subunit B' [Thermogladius
           cellulolyticus 1633]
          Length = 1151

 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 180/686 (26%), Positives = 299/686 (43%), Gaps = 103/686 (15%)

Query: 324 LTNCILPHL------DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY 377
           L   +LPH+           K L +  M  K+  V  G  Q D +D    + +   G L 
Sbjct: 314 LDEYLLPHIGTDPSPSTRLKKALFIGQMINKIIEVYLGRRQPDDKDHYRNKRLKLAGDLL 373

Query: 378 LQLL------------KKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNS 425
             LL            K     T +  ++ D+    + + I   +++ +ATGN   G+  
Sbjct: 374 ATLLRHAIVVSFIREVKTSIEKTYSKYRKVDLKMVIKPNIITDRISHAMATGNWPGGRTG 433

Query: 426 TLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTP 485
             Q++         +  N +  +SH R V      +     E R+L   +WG +CP  TP
Sbjct: 434 VSQIL---------DRTNMLSTLSHLRRV-VSPLARAQPHFEARELHFTSWGRMCPFETP 483

Query: 486 DGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM------ 539
           +G   GL+ +L     IS     K + Q    LV LG+  L  ++  + E          
Sbjct: 484 EGANIGLVKNLALMAHISVGFDEKEVEQ---TLVKLGVKTLPQILDELKESIKRGEAYSG 540

Query: 540 ---------VMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL 590
                    V L+GR++G   D     L  K+R L+  G KI   + + Y +        
Sbjct: 541 TAEYSSWSKVYLNGRLIGLYPD--GGELARKIRELRRQG-KISSEVNVAYFR-----TEY 592

Query: 591 YPGLYLFTGPGRMLRPVM---------------NLAAGNIEWIGTFEQVFMDICITMKE- 634
              +Y+    GR+ RP++                L  GN+++    ++  ++     +E 
Sbjct: 593 LNEVYVNCDAGRIRRPLLVVENGELKLKPEHIKQLKNGNLKFEDLVKRGVIEYLDPDEEE 652

Query: 635 -AYPGIT--------THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
            AY  +         TH E+     L  +A++IP P+ NQSPRN+Y+  MGKQ++G    
Sbjct: 653 NAYIALNPDELSIEHTHLEIWVPSILGIVASIIPYPEHNQSPRNIYEAAMGKQSLGLYAA 712

Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
           N++ +   + + L  P  P  +    + +  +  P G N +VAV++YTGY++EDA+I+NK
Sbjct: 713 NFQRRMDSRGHFLHYPQKPLAQTKPLEVIGYNEKPAGQNMVVAVLTYTGYNIEDAVIMNK 772

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           SS ERG      F+ ++  +E  Y Y G +     V  S ++   + G   Y++L     
Sbjct: 773 SSIERGLGRSTFFR-VYSTVE--YKYPGGQEDKISVPPSDIRG--YKGPRAYEKLDEDGI 827

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
              +T    G       L  K+ P   +           +    +  ++  V  R+  +E
Sbjct: 828 VAPETYVVGG-----DVLIGKVSPSRFMIT-------QELTGSEQVKQDTSVVMRH--EE 873

Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
           +  V+VV +++  ++G  +      +  R  R P +GDKFASR GQKG+  +  P  D+P
Sbjct: 874 KGIVDVVMITTD-SDGNKLVK----VRVRDLRIPELGDKFASRHGQKGVVGLIIPQYDMP 928

Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
           FT+ G+ PD++ NPH FPSRMT+G L
Sbjct: 929 FTEDGITPDLIINPHAFPSRMTVGQL 954



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 32/53 (60%)

Query: 759  KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            K M +    GY   G E MY G  G +M+A +F G+V+YQ+L HMVSDK   +
Sbjct: 982  KLMVVLKRHGYPETGEEAMYDGRTGELMRAPVFIGIVYYQKLHHMVSDKIHAR 1034



 Score = 47.4 bits (111), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P    VA      +      ++  +P+MLKS+   L  L+  +L + 
Sbjct: 81  PMECRLRNLTYAAPVTAKVALVDREGSHKEQDIKLMDLPVMLKSELDPLSKLSKEELKQV 140

Query: 191 GEHPDEWGGYFIVGGHEKLV 210
           GE PD+ GGYFI+ G EK++
Sbjct: 141 GEDPDDPGGYFIINGAEKVL 160


>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
 gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 172/616 (27%), Positives = 265/616 (43%), Gaps = 117/616 (18%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 434 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 486

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 487 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 542

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               I   L   G      +  ++  QA  + ++G  VG   D     ++ K        
Sbjct: 543 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD---PDMLVKTLRRLRRR 599

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +   + +V   R ++       L ++T  GR  RP+  +                   
Sbjct: 600 VDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRE 652

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      A G IE+I T E+    I +T+          +EAY    TH E+  + 
Sbjct: 653 SSEEGGWHDLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSL 712

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 713 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 772

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 773 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 821

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANK-----AL 823
             Y  E    G                              K+ FGR D AN        
Sbjct: 822 RSYRDEEKKMGT---------------------------LVKEDFGRPDRANTMGMRHGS 854

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
            DKL  DGL   G +++  D +        + E +  + RY+ + +  + +    +G  +
Sbjct: 855 YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYT-RRDHSISLRHSETGIVD 913

Query: 881 GGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
              +T N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI
Sbjct: 914 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 973

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPH  PSRMTIG L
Sbjct: 974 IVNPHAIPSRMTIGQL 989



 Score = 53.1 bits (126), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V         DG+       FTK  +G+VPIML+S  C L 
Sbjct: 113 FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 172

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 173 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 218



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1026 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1075


>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
          Length = 1173

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 184/689 (26%), Positives = 298/689 (43%), Gaps = 112/689 (16%)

Query: 323 MLTNCILPH--LDDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH  + D+ +  K   + +M  +L     G  +LD  D I  + +   G    
Sbjct: 344 ILQKEMLPHVGISDFCETKKAYFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLA 403

Query: 375 ----SLYLQLLKKEK-SGTSAVLKESD--IYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
               +L+  LLK+ + +    + K  D  + A  + S+I   +   LATGN    K +  
Sbjct: 404 FLFRALFKNLLKEVRLTAQKYINKNGDFILDACVKTSTITRGLAYSLATGNWGDQKKA-- 461

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              Q+   V  ++ +NR+ Y   +SH R  +     +E + ++PRQL    WG +CP  T
Sbjct: 462 --HQSRAGV--SQVLNRLTYTATLSHLRRCN-SPIGREGKLAKPRQLHNTQWGMVCPAET 516

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS   +P  +L      L    M  L  V  S    A  + ++
Sbjct: 517 PEGQAVGLVKNLALMAYISVGSLPEPIL----EFLEEWSMENLEEVAPSAIADATKIFVN 572

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     L+  L+ L+   + I   + +V   R  +       + ++T  GR+
Sbjct: 573 GAWVGIHRD--PEQLMSTLKKLRREMDIIVSEVSMVRDIRDRE-------IRIYTDAGRV 623

Query: 604 LRPVMN----------------------------LAAGNIEWIGTFEQVFMDICITMKE- 634
            RP++                             +A G +E I   E+  + + +  ++ 
Sbjct: 624 CRPLLIVENQKLVLKKKHIDQLKDTNDNYAWSDLVAGGVVELIDAMEEETVMLAMMPEDL 683

Query: 635 ---AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
               Y    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+  + 
Sbjct: 684 KAGGYCDTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRM 743

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
               + L  P  P       + L  +  P G NAIVA++SYTGY+ ED++I+N+S  +RG
Sbjct: 744 DTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSVIMNQSGIDRG 803

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
                +F+S+F       +Y   E      +  +++            +RH         
Sbjct: 804 -----LFRSVFYR-----SYRDQEANLDNANEELIEKPTRDKC---SGMRH--------- 841

Query: 812 DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM----YSYWKESENRYVTCRYSGKEEM 867
                     +L DKL  DG++  G +++  D +     S     ++     +   K + 
Sbjct: 842 ----------SLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDVEDDLEANTKKYTKRDA 891

Query: 868 CVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAE 922
              +    +G  +   +T N     ++  R++  R P +GDKFASR GQKG   + +  E
Sbjct: 892 STFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKGTMGIMYRQE 951

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PFT+ G+ PDI+ NPH  PSRMTIG L
Sbjct: 952 DMPFTNEGITPDIIINPHAVPSRMTIGHL 980



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 71/160 (44%), Gaps = 29/160 (18%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFE---------IYGKT-LKLNIVKAAISEPKVPAGP 121
            + SFD  +   +   VED  P+E +         I   T   L + +  +S+P      
Sbjct: 46  QLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDIENPTKFALKLDQIYLSKP------ 99

Query: 122 VGIHFNK------YYPTEARQTRSVYSGPF--NVTVAWSWDGKAGGTFTKE---VGRVPI 170
              H+ K        P EAR     YS P   ++T   S DG+       E   VG++PI
Sbjct: 100 --THWEKDGAPTPMMPNEARLRNLTYSSPLYVDITKTVSRDGEDPKESKYEKVFVGKIPI 157

Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           ML+S  C L N++   L E  E P + GGYFI+ G EK++
Sbjct: 158 MLRSSYCMLSNMSDRDLTELNECPLDPGGYFIINGSEKVL 197



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  +  Q+F G  +YQRL+HMV DK  ++
Sbjct: 1016 EYGYHLRGNEIMYNGHTGHKLTTQVFLGPTYYQRLKHMVDDKIHSR 1061


>gi|294882952|ref|XP_002769896.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
           ATCC 50983]
 gi|239873722|gb|EER02614.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
           ATCC 50983]
          Length = 324

 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/321 (39%), Positives = 172/321 (53%), Gaps = 35/321 (10%)

Query: 366 MLQEIMTGGSLYLQ--LLKKEKSG------TSAVLKESDIYAAFRA-SSIESAMTNFLAT 416
           +L+E++    L L+  L KK +           VL    I   F     +   M +FLAT
Sbjct: 5   LLKEVLQSSLLRLEGALAKKSRQAQVGKGRAPTVLSAELIRNTFMGVCDVTKRMESFLAT 64

Query: 417 GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAW 476
           GN+++   S L L Q +GF ++A+ +N  RY+SHFRAVHRGS+FQEM+++  R+L  + W
Sbjct: 65  GNITS--RSGLDLQQTTGFTVVADKLNAYRYLSHFRAVHRGSFFQEMKTTSVRKLLPETW 122

Query: 477 GFICPVHTPDGTPCGLLNHLTTNCQISEYI--PSKVLAQIPSVLVSLGMLPLTPVIQSIP 534
           GF+CPVHTPDGTPCGLLNHL   CQ    I  P  V+  +   L SLG+  +     S  
Sbjct: 123 GFLCPVHTPDGTPCGLLNHLAAPCQPVVRIASPEGVIPGLEEELASLGVQLVRSSKTSTA 182

Query: 535 E----QALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE--KIPKSLEIVYLKRPEKGM 588
                +   V LDGR++G +      ++  +LR LKI  +   +P  LEIV  + P    
Sbjct: 183 NYGAGENAYVTLDGRVLGKVARSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPAS-- 240

Query: 589 GLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT------------MKEAY 636
             + GL+LFTGP RM+RPV +LA GN E +G  EQVF+ I  T            + E  
Sbjct: 241 --FEGLWLFTGPCRMVRPVRDLATGNEELVGPMEQVFLKIAATREDLEASTKTSSVPENI 298

Query: 637 PGITTHRELSKTDFLSNLANL 657
           P   TH ELS    LS +A L
Sbjct: 299 PMKYTHIELSPISMLSVIAGL 319


>gi|297527625|ref|YP_003669649.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus
           DSM 12710]
 gi|297256541|gb|ADI32750.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus
           DSM 12710]
          Length = 1156

 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 182/719 (25%), Positives = 317/719 (44%), Gaps = 121/719 (16%)

Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNC-ILPHLDDYWDKFLCLSHMTCKLFHVV 353
           +++  G+  +E+++   R L+E     Y+L +    P  +    K   +  M  KL  ++
Sbjct: 299 ARIAIGRPREERIRRAQRALDE-----YLLPHIGTEPTPEVRRKKAYFIGQMVNKLIELI 353

Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE------KSGTSAVLK------ESDIYAAF 401
            G  + D +D    + +   G L  QL++        +   S++ +      + D+    
Sbjct: 354 VGRRKPDDKDHYRNKRLKLAGDLLAQLIRHNLVTYFIREVKSSIERSYSKYGKLDLKLVI 413

Query: 402 RASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQ 461
           +   +   + + +ATGN   GK    QL+         +  N M  +SH R V       
Sbjct: 414 KPGMLTDRILHAMATGNWPGGKTGVSQLL---------DRTNLMSTLSHLRRV-----VS 459

Query: 462 EMRSSEP----RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSV 517
            ++ ++P    R+L    WG +CP  TP+G   GL+ +L     +S  +P + +   P +
Sbjct: 460 PLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHVSVGVPEEHIE--PIL 517

Query: 518 LVSLGMLPLTPVIQSIPEQAL-------------MVMLDGRIVGYILDQIATSLVPKLRM 564
              LG+  +  +I  + +                 V L+GR++GY  D     L  ++R 
Sbjct: 518 YEKLGVKSIEEIIGEVKKAVTGELEEYPDYTSWSRVYLNGRLIGYYPD--GKKLAEEIRN 575

Query: 565 LKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NIEW 617
           ++  G KI   + + +++           +Y+ T  GR+ RP++ +  G       +I  
Sbjct: 576 MRRRG-KISIEVNVAHIQDEHLNE-----VYINTDAGRIRRPLLVVENGKLKLKPEHIAK 629

Query: 618 IGTFEQVFMDICIT----------MKEAYPGIT--------THRELSKTDFLSNLANLIP 659
           + + E  F D+              +EAY  +T        TH E+     +   A++IP
Sbjct: 630 LKSGEWKFSDLVKKGIIEYLDADEEEEAYIALTPDQITPEHTHMEIWTPAIMGITASIIP 689

Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
             + NQSPRN Y+  M KQ++G    N++ +     + L  P  P  +    +    +  
Sbjct: 690 YAEHNQSPRNSYEAAMAKQSLGLYSANFQRRMDTHGHLLHYPQKPLVQTRAMEVNGYNER 749

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P G N +VAV+S+TGY++EDA+I+NKSS +RG A    F+ ++  +E  Y Y G +    
Sbjct: 750 PAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFR-LYTTVE--YRYPGGQEDKI 806

Query: 780 GVDGSMMQAQIFFGVVHYQRLRH--MVSDKWQTKDYFGRDPANKALEDKLGPDGLV---- 833
            +  S ++   + G   Y++L    +VS +   K           L  K+ P   +    
Sbjct: 807 TIPPSNVRG--YRGPKAYEKLDEDGIVSPETPVK-------GGDVLIGKISPPRFMTAQE 857

Query: 834 -YVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIG 892
             VGA +  +D             V  R+   E+  V++V +++       V        
Sbjct: 858 YTVGAGITRQDAS-----------VVTRHG--EKGIVDLVMVTTDIDGNRLVKARV---- 900

Query: 893 YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKFASR GQKG+  +  P +D+PFT+ G+VPD++ NPH FPSRMT+G L
Sbjct: 901 -RDLRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGIVPDLIINPHAFPSRMTVGQL 958



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 754  HGCIFKSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            H    +++ I L+  GY   G ETMY G  G +++  IF G+V+YQ+L HMV+DK   +
Sbjct: 980  HKEPIENLMITLKRHGYPMSGYETMYDGRTGEILKTPIFIGIVYYQKLHHMVADKIHAR 1038



 Score = 46.2 bits (108), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     Y+ P  + VA   +         ++  +P+MLKSK   L  +T  +LI  
Sbjct: 85  PLECRLRNFTYAVPVYLRVALQDETGIYKEQEIKLMDLPVMLKSKIDPLSKMTAEELIAI 144

Query: 191 GEHPDEWGGYFIVGGHEKLV 210
           GE P + GGYFI+ G EK++
Sbjct: 145 GEDPKDPGGYFIINGSEKVL 164


>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
           frontalis]
          Length = 915

 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 183/651 (28%), Positives = 279/651 (42%), Gaps = 125/651 (19%)

Query: 374 GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
           GSL+  L +K  S  S  L       +E ++  A R ++I   +   LATGN  A     
Sbjct: 213 GSLFRMLFRKLTSDVSKSLQKCIDRNREFNLNVAIRPNTITDGLKYSLATGNWGAQS--- 269

Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
            + MQ+   V  ++ +NR  +   +SH R ++     ++ + ++PRQL    WG +CP  
Sbjct: 270 -KFMQSRAGV--SQVLNRYTFASTLSHLRRLN-TPIGRDGKLAKPRQLHNTHWGMVCPAE 325

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           TP+G  CGL+ +L     +S    S   A I   L    M  +  V  S    A  + ++
Sbjct: 326 TPEGQACGLVKNLALMSYVSVGSSS---APIIEFLEEWSMENMEEVHVSHILNATKIFVN 382

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG   D     LV  LR L+  G+ +   + IV   R  +       L ++T  GR+
Sbjct: 383 GVWVGVHRD--PEHLVKTLRDLR-RGQNVNAEISIVRDIRERE-------LRIYTDAGRI 432

Query: 604 LRP---VMN----------------------------LAAGNIEWIGTFEQVFMDICITM 632
            RP   V N                            +  G IE+I   E+    IC++ 
Sbjct: 433 CRPLFIVENQKLKLKKSHIALIQEKNETGEGWGWDDLIENGIIEFIDAEEEETTLICMSH 492

Query: 633 KEAYP----------GIT-------------THRELSKTDFLSNLANLIPMPDCNQSPRN 669
           ++  P          GI+             TH E+  +  L   A+++P PD NQSPRN
Sbjct: 493 EDLDPKDTEMDIQDYGISKRLKSRSVYSRNWTHCEIHPSMILGICASIVPFPDHNQSPRN 552

Query: 670 MYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAV 729
            YQ  MGKQ MG    N++ +       L  P  P       + L   + P G NAIVA+
Sbjct: 553 TYQSAMGKQAMGIYLTNFQLRMDTMANILYYPQKPLVTTRAMEYLRFRDLPAGQNAIVAI 612

Query: 730 ISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
             Y+GY+ ED++I+N+SS +RG      ++S +++ E     +  E        + +   
Sbjct: 613 ACYSGYNQEDSIIMNQSSIDRGLFRSLFYRS-YMDQEKKVGMFNVENFEKPTRETCL--- 668

Query: 790 IFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS-- 847
                    RLRH   +K               LED    DGL+  G ++   D +    
Sbjct: 669 ---------RLRHGTYEK---------------LED----DGLIAPGIRVTGDDIIIGKT 700

Query: 848 --YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN---CAYIGYRIQ--RNPT 900
               ++SE       +  K +    +    +G  +   VT N     ++  R++  R P 
Sbjct: 701 IPLSQDSEELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMRFVKVRVRSTRIPQ 760

Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +GDKFASR GQKG   + +  ED+PFT +G+ PDI+ NPH  PSRMTIG L
Sbjct: 761 MGDKFASRHGQKGTVGMTYRTEDMPFTVNGITPDIIINPHAIPSRMTIGHL 811



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 31/46 (67%)

Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           E+GY   G E M++G  G  +QAQIF G  +YQRL+HMV DK  ++
Sbjct: 846 ENGYQSRGFEVMFNGHTGKKLQAQIFLGPTYYQRLKHMVDDKIHSR 891


>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
 gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
          Length = 1233

 Score =  197 bits (501), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 173/625 (27%), Positives = 272/625 (43%), Gaps = 111/625 (17%)

Query: 384  EKSGTSAVLKES--DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
            E +   ++LK S  D+  A    +I   +   LATGN     +  ++         +A+ 
Sbjct: 469  ESTLKKSILKSSEIDVAPAVNKRTITKGLQYSLATGNWGVQGSRDIR-------AGVAQV 521

Query: 442  INRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
            +NR+ Y   +SH R ++     +  + + PRQL    WG ICP  TP+G  CGL+ +L  
Sbjct: 522  LNRLTYTSTLSHLRRLNT-PIERSGKQAAPRQLHNTQWGVICPAETPEGGACGLVKNLAL 580

Query: 499  NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
               I+          I  +L  LG+  L  + +S   +   V L+G  +G  +      L
Sbjct: 581  MSYITVGTDK---THISKMLDELGINKLHELDESDLNKYTKVFLNGMWMG--VHHTPDEL 635

Query: 559  VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV----------- 607
            V  LR+L+  G  +   + IV   R  +       + ++   GR  RP+           
Sbjct: 636  VKHLRVLRRTG-AVDMQVSIVRDVRERE-------VRIWCDSGRCARPLFIVDRDHDTLF 687

Query: 608  -------------MN----LAAGNIEWIGTFEQVFMDICITMKE-------AYPGIT--- 640
                         MN    L  G +E I T E+  + I +  +E       A  G +   
Sbjct: 688  IKNQHVQALRENTMNWDNLLEQGLVELIDTEEEESIMIAMDFRELVEKRSSANEGKSRKG 747

Query: 641  ------THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGK 694
                  TH E+  +  L  L ++IP PD NQSPRN YQ  MGKQ MG    N++ +    
Sbjct: 748  GSRQPYTHAEIHPSMILGILGSIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFQQRMDTL 807

Query: 695  LYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAH 754
             + L  P  P       + L     P G NA+VA+  Y+GY+ ED++I+N+S+ +RG   
Sbjct: 808  AHVLYYPQRPLVTTQPMEYLRFGELPAGQNAVVAIACYSGYNQEDSVIMNQSAIDRG--- 864

Query: 755  GCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYF 814
              +F+S+F      Y  Y       G           F + ++++ +   +   +T  Y 
Sbjct: 865  --LFRSVF------YRTYSDHERKKG----------NFLLENFEKPKRDTTAGMKTSTY- 905

Query: 815  GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY---WKESENRYVTCRYSGKEEMCVEV 871
                      +KL  DG++  G +++  D +        E   +  T R + + +M   +
Sbjct: 906  ----------EKLEDDGIIAPGVRVSGSDIIIGKTVPLPEESAKQKTSRQT-RLDMSTPL 954

Query: 872  VRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
                +G  +   VT +        I  R+ R P +GDKF+SR GQKG C + +  EDLPF
Sbjct: 955  RSNENGIVDTVVVTTDSEGFKFVKIKVRVVRIPQIGDKFSSRHGQKGTCGITYRQEDLPF 1014

Query: 927  TDSGLVPDIVFNPHGFPSRMTIGFL 951
            T  G+VPDI+ NPH  PSRMT+G L
Sbjct: 1015 TREGIVPDIIVNPHAIPSRMTVGQL 1039



 Score = 48.1 bits (113), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY     E M++G  G  ++AQIF G  +YQRL+HMV DK  ++
Sbjct: 1076 GYQKRANEVMFNGHTGRKLEAQIFIGPTYYQRLKHMVDDKIHSR 1119



 Score = 43.1 bits (100), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 27/144 (18%)

Query: 112 ISEPKVPAGPVGIH-FNKYYPTEARQTRSVYSGPFNVTVAWS----WDGKAGGTFTKEVG 166
           +S P V      I  ++  YP +AR     YS P  V +         G     +T +VG
Sbjct: 128 LSRPTVDTKSEQIEAYSSVYPNDARLRNLTYSSPLYVDIHEKKITLRPGSTANIYTAQVG 187

Query: 167 R--------------------VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGH 206
                                +PIML+S  C L  +    + + GE P + GGYFI+ G 
Sbjct: 188 EEDTDDFIVQSKIHNQIPLGSIPIMLRSVYCMLSEV--QDVTDVGECPFDSGGYFIINGG 245

Query: 207 EKLVRLLINNRRNHPIAIKRNAWK 230
           EK++        NH    K+   K
Sbjct: 246 EKVIIAQERMATNHVYVFKKAMSK 269


>gi|62946665|gb|AAY22444.1| RNA polymerase Rpb2 domain 6 [Lymphocystis disease virus 1]
          Length = 1018

 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 223/868 (25%), Positives = 383/868 (44%), Gaps = 116/868 (13%)

Query: 124 IHFNK--YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN 181
           I +NK    P EA+Q    Y+   N  + ++     G +   E+  +P+ML+SK C   N
Sbjct: 43  IQYNKPKITPLEAKQKDLTYAISINYEIDFN-----GKSTILEIFSLPLMLRSKLCLTNN 97

Query: 182 LTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAW-----KNRGLLF 236
           +      E    P++ GGYFIV G E+++   I  R N P+    + +     ++     
Sbjct: 98  VAHQTTFELC--PNDPGGYFIVKGKERVLIPHIRPRYNVPMVKYEDGFYLCEFRSASETG 155

Query: 237 SDLGVYIRSVKRD--ESATNNVLHFVTNGSA--RFMFSHRKSMCLLGMMQ----SLHEEG 288
           S   +  R+  +   E +   +  FV  G+       S  ++  L G+ Q    +L+ + 
Sbjct: 156 SSTLIQARTDGKIVLEFSLPYIKQFVPAGTVFKTLGISFEEAFLLCGLGQKNKHTLNCKS 215

Query: 289 IHTQHDSKVFFGQIFKEK-----LQYDLRHLNEVEICDYMLTNCILPHLDDY--WDKFLC 341
            + +  S + +G     K     +  D++  N+    + +L   I  HL+D+  ++    
Sbjct: 216 GYYEALSTILYGHYTGNKTVTDYVPVDVKCDNKESYVESLLKKEIFNHLEDHSPFNVACH 275

Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-----------YLQLLKKEKSGTSA 390
           L +M  +L  V  G   L  +D +  + + T G+L           Y++L+K     +  
Sbjct: 276 LGYMINRLAAVTAGEAALTDKDDLAYKRVDTSGTLIEFLFKGLFKQYVRLIK----NSLE 331

Query: 391 VLKESD-IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
           +LK  D I      + I + +    ATGN S  K      M+     ++  N N    +S
Sbjct: 332 ILKNPDPINIVKNVNVITNGLNLCFATGNWSVKKTGPPSYMRVGVSQVLC-NHNYGSRLS 390

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R +     F+  ++ + R+L    +GFICP  TP+G   G++ +   +   S+ IP  
Sbjct: 391 HLRRLMHAVGFKG-KNFKIRRLHASHYGFICPYETPEGERVGVVLNTALSTAFSQGIPKN 449

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
            +  +           + P I++    +  V+L+G IVGY+ D   T     ++ LK V 
Sbjct: 450 QIKPL-----------MEPYIKN--SGSFKVILNGEIVGYVDDPDQT-----IKFLKSV- 490

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
             +P+ + +   +   K        ++F+  GR LRPV+             E   + +C
Sbjct: 491 --LPEEVSVFCYRFTPK----IKECHVFSDKGRFLRPVL------------VESKIIRVC 532

Query: 630 ITMKEAYPGITTHRELSKTDFLSN-LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW- 687
              +E +     ++EL     +++ +A++IP  +   SPR  YQ  MGKQ +G   L   
Sbjct: 533 --AQEIHH--IKYKELPAYSTMTDVMASVIPFYNHAPSPRIAYQSNMGKQAVGITTLTGG 588

Query: 688 --RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
             RY      Y L  P     R + YD    D    G   IVAV +  GY+ ED+++LNK
Sbjct: 589 RDRYDPT--FYSLDYPQKALARTICYDRYKFDIMCHGAVPIVAVSTMDGYNQEDSVVLNK 646

Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
           SS +RG  +   +K+ F+E+E   + + +E + +  D S+    + + ++       ++ 
Sbjct: 647 SSIDRGLFNITCYKT-FVEIEKYKSKHDSE-LIAHPDFSIRNRDLDYSLLGKT---GVLD 701

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER--DPMYSYWKESENRYVTCRYSG 863
            K   K+   R P   AL     P G V VG K+ ++  D +  Y      R V+     
Sbjct: 702 PKLGKKNKKYRCPLCDAL---WFPAGTVLVG-KVAKKLIDGVIVY------RDVSLAVKA 751

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
            EE  ++ + +     E G +      +  R  + P +GDKFAS   QKG C + +  ED
Sbjct: 752 DEEGYLDEL-LDHYTIETGRIIK----VKLRSSKIPEIGDKFASFTAQKGTCGMIYRQED 806

Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +PFT  G+VPD++ NPH FPSRMTI ++
Sbjct: 807 MPFTAEGVVPDLIINPHAFPSRMTINYI 834


>gi|390939172|ref|YP_006402910.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans
           DSM 16532]
 gi|390192279|gb|AFL67335.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans
           DSM 16532]
          Length = 1166

 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 185/710 (26%), Positives = 305/710 (42%), Gaps = 141/710 (19%)

Query: 323 MLTNCILPHL------DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL 376
           +L   +LPH+      +    K + +  M  ++  +  G    D +D    + +   G +
Sbjct: 317 LLDERLLPHIGIDSSPETRLKKAVFIGQMISRIIELQLGYRGPDDKDHYRNKRLKLAGDM 376

Query: 377 YLQLLKKEKSGTSAVLKES-----------DIYAAFRASSIESAMTNFLATGNVSAGKNS 425
              LL+    G +  +KE            D+   F+ S I   + + +ATGN   G+  
Sbjct: 377 LAVLLRAAMMGFAREIKEGIEKQLAKTKKIDLKMVFKPSIITDRIQHAMATGNWPGGRTG 436

Query: 426 TLQLMQASGFVIMAENINRMRYMSHFRAV----HRGS-YFQEMRSSEPRQLRTDAWGFIC 480
             QL+         +  N +  +SH R V     RG  +F      E R+L    WG +C
Sbjct: 437 VSQLL---------DRTNMLSTLSHLRRVVSPLARGQPHF------EARELHGTQWGRMC 481

Query: 481 PVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTP-----------V 529
           P  TP+G   GL+ +L     +S  I  K   +I ++L  +G++P+             +
Sbjct: 482 PFETPEGANIGLVKNLALMTNVSVGIDDK---EIEALLYRVGVVPIVSTRTIDGKIHKGL 538

Query: 530 IQSIPEQA-------------LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSL 576
           I  I E                 V L+G+++GY  D     L   +R L+  G KI   +
Sbjct: 539 IDMISEDVSKATEISEKYSGWCKVFLNGKLIGYHKD--GEELARTIRSLRRSG-KISSEV 595

Query: 577 EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG-------NIEWIG----TFEQVF 625
            + Y+     G      + + T  GR+ RP++ +  G       +++ +     TFE + 
Sbjct: 596 NVAYI-----GNKYIKEVVVNTDSGRIRRPLIVIENGVPKLTREHVKLLSEGKLTFEDLV 650

Query: 626 MDICITM------KEAYPGIT--------THRELSKTDFLSNLANLIPMPDCNQSPRNMY 671
               I        + AY  +         TH E+     L   A++IP P+ NQSPRNMY
Sbjct: 651 KQGIIEYLDPDEEENAYIALQPSDVTAEHTHLEIWIPAILGITASIIPYPEHNQSPRNMY 710

Query: 672 QCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVIS 731
           Q  M KQ++G    N++ +   + + L  P  P       + +  +  P G N +VAV++
Sbjct: 711 QSAMAKQSLGLYAANFQRRMDTRGHFLHYPQRPLVETRMMNVIGYNERPAGQNMVVAVLT 770

Query: 732 YTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIF 791
           YTGY+MEDA+I+N+SS ERG A    F+ ++  +E  Y Y G            +Q +I 
Sbjct: 771 YTGYNMEDALIMNRSSVERGLARSTFFR-LYTTVE--YKYPGG-----------IQDEIT 816

Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE 851
               + +  R                   KA E KL  DG+V    +++  D +    K 
Sbjct: 817 IPSTNVRGYR-----------------GQKAYE-KLEEDGIVAPETQVSGGDVLIG--KV 856

Query: 852 SENRYVTCRYS-----GKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTV 901
           S  R+++ +        +++  + +     G  +   +T +      I  R++  R P +
Sbjct: 857 SPPRFLSAQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGNKLIKVRVRDLRIPEL 916

Query: 902 GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GDKFASR GQKG+  +  P  D+PFT+ G+ PD++ NPH FPSRMT+  L
Sbjct: 917 GDKFASRHGQKGVLGLLLPQYDMPFTEEGVTPDLIINPHAFPSRMTVAQL 966



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 9/141 (6%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
           H+ S++  + E L   +E+   I   I    +KL I K  I  PK  +   GI  +K  P
Sbjct: 31  HLDSYERFIKELLPSILEEFKEI---IITDKIKLVIEKYRIDSPKWTSVE-GIEESKT-P 85

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVG--RVPIMLKSKRCHLRNLTPAQLIE 189
            E R     Y+ P  V+V    + ++G T  +E+    +P+MLKS    L  LTP +LIE
Sbjct: 86  MECRLRNLTYATPIYVSV--RIEDESGYTREQELKLMDLPVMLKSSIDPLSKLTPQELIE 143

Query: 190 RGEHPDEWGGYFIVGGHEKLV 210
            GE P + GGYFI+ G EK++
Sbjct: 144 NGEDPRDPGGYFIINGSEKVI 164



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            GY Y G E MY G  G +++  +F G+V+YQ+L HM SDK   +
Sbjct: 1003 GYPYTGEEAMYDGRTGELIKTPVFIGIVYYQKLHHMASDKIHAR 1046


>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 171/616 (27%), Positives = 269/616 (43%), Gaps = 117/616 (18%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 327 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 379

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+    + 
Sbjct: 380 HLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 438

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
            + +      +     ++P +  IP QA  + ++G  VG  + +    LV  LR L+   
Sbjct: 439 PILEFLEEWSTENFEEISPAV--IP-QATKIFVNGCWVG--IHRNPDLLVKTLRQLR--- 490

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
            ++  + E+  ++           L L+T  GR  RP+  +                   
Sbjct: 491 RQVDVNTEVGVIRDIR-----LKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRE 545

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      A G IE++ T E+    I +T+          +EAY    TH E+  + 
Sbjct: 546 SPEEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLITAKLNPEEAYSDTYTHCEIHPSL 605

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQ+PRN YQ  MGKQ MG    N++ +     Y L  P  P     
Sbjct: 606 ILGVCASIIPFPDHNQTPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTR 665

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 666 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 714

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE----- 824
             Y  E    G                              K+ FGR      +      
Sbjct: 715 RSYRDEEKKMGT---------------------------LVKEDFGRPNRENTMGMRHGS 747

Query: 825 -DKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
            DKL  DGL   G +++  D +        + E++    RY+ + +    +    SG  +
Sbjct: 748 YDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQASRYT-RRDHSTSLRHSESGMVD 806

Query: 881 GGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
              +T N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI
Sbjct: 807 QVLLTTNADGLRFVKVRMRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 866

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPH  PSRMTIG L
Sbjct: 867 IVNPHAIPSRMTIGQL 882



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V      K       T T+E     +G+VPIML+S  C + 
Sbjct: 6   FPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTVY 65

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 66  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 111


>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa
           s.n.]
          Length = 951

 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 171/616 (27%), Positives = 268/616 (43%), Gaps = 117/616 (18%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 327 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 379

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+    + 
Sbjct: 380 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAY 438

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
            + +      +     ++P +  IPE A  + ++G  VG   D     ++ K        
Sbjct: 439 PILEFLEEWGTENFEEISPAV--IPE-ATKIFVNGCWVGIHRD---PDMLVKTLRRLRRR 492

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +   + +V   R ++       L ++T  GR  RP+  +                   
Sbjct: 493 VDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRE 545

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      A G IE++ T E+    I +T+          +EAY    TH E+  + 
Sbjct: 546 TPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARLNPEEAYSEYYTHCEIHPSL 605

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 606 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 665

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 666 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 714

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE----- 824
             Y  E    G                              K+ FGR   N  +      
Sbjct: 715 RSYRDEEKKMGT---------------------------LVKEDFGRPNRNDTMNMRHGS 747

Query: 825 -DKLGPDGLVYVGAKLNERDPMY---SYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
            DKL  DGL   G +++  D +    S   + E++    RY+ K +    +    +G  +
Sbjct: 748 YDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQGQASRYT-KRDHSTSLRHSETGMVD 806

Query: 881 GGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
              +T N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI
Sbjct: 807 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDI 866

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPH  PSRMTIG L
Sbjct: 867 IVNPHAIPSRMTIGQL 882



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V+        DG+       FTK  +G+VPIML+S  C L 
Sbjct: 6   FPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLF 65

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 66  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 111


>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 169/610 (27%), Positives = 262/610 (42%), Gaps = 105/610 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           KE ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 432 KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 484

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 485 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 540

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               I   L   G      +  S+  QA  + ++G  VG   D     ++ K        
Sbjct: 541 AAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRD---PDMLVKTLRRLRRR 597

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +   + +V   R ++       L ++T  GR  RP+  +                   
Sbjct: 598 VDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRE 650

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      A G IE+I T E+    I +T+          +EAY    TH E+  + 
Sbjct: 651 SAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSL 710

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 711 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 770

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 771 AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 819

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
             Y  E    G                      +V + +   D            DKL  
Sbjct: 820 RSYRDEEKKMGT---------------------LVKEDFGRPDRGSTMGMRHGSYDKLDD 858

Query: 830 DGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           DGL   G +++  D +        + E +  + RY+ + +  + +    +G  +   +T 
Sbjct: 859 DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYT-RRDHSISLRHSETGMVDQVLLTT 917

Query: 887 NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH 
Sbjct: 918 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHA 977

Query: 942 FPSRMTIGFL 951
            PSRMTIG L
Sbjct: 978 IPSRMTIGQL 987



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V         DG+       FTK  +G+VPIML+S  C L 
Sbjct: 111 FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLF 170

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 171 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 216



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G E MY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1024 GYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1073


>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
 gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
           Short=RNA polymerase II subunit 2; Short=RNA polymerase
           II subunit B2; AltName: Full=DNA-directed RNA polymerase
           II 135 kDa polypeptide; AltName: Full=Protein EMBRYO
           DEFECTIVE 1989
 gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
           [Arabidopsis thaliana]
 gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
           [Arabidopsis thaliana]
 gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 169/610 (27%), Positives = 262/610 (42%), Gaps = 105/610 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           KE ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 432 KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 484

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 485 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 540

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               I   L   G      +  S+  QA  + ++G  VG   D     ++ K        
Sbjct: 541 AAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRD---PDMLVKTLRRLRRR 597

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +   + +V   R ++       L ++T  GR  RP+  +                   
Sbjct: 598 VDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRE 650

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      A G IE+I T E+    I +T+          +EAY    TH E+  + 
Sbjct: 651 SAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSL 710

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 711 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 770

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 771 AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 819

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
             Y  E    G                      +V + +   D            DKL  
Sbjct: 820 RSYRDEEKKMGT---------------------LVKEDFGRPDRGSTMGMRHGSYDKLDD 858

Query: 830 DGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           DGL   G +++  D +        + E +  + RY+ + +  + +    +G  +   +T 
Sbjct: 859 DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYT-RRDHSISLRHSETGMVDQVLLTT 917

Query: 887 NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH 
Sbjct: 918 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHA 977

Query: 942 FPSRMTIGFL 951
            PSRMTIG L
Sbjct: 978 IPSRMTIGQL 987



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V         DG+       FTK  +G+VPIML+S  C L 
Sbjct: 111 FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLF 170

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 171 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 216



 Score = 47.8 bits (112), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G E MY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1024 GYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1073


>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
           magnipapillata]
          Length = 1184

 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 190/699 (27%), Positives = 297/699 (42%), Gaps = 129/699 (18%)

Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH+   D+ +  K   L +M  ++     G  +LD  D    + +   G    
Sbjct: 347 ILQKEMLPHVGTSDFCETKKAYFLGYMVHRILLAALGRRELDDRDHYGNKRLDLAGPLLA 406

Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
                L+  L+K+ +      +   K+  I  A +  +I   +   LATGN    K +  
Sbjct: 407 FLFRGLFKNLMKEVRLYAQKFIDKGKDFKIELAIKTKTITDGLRYSLATGNWGDQKKA-- 464

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              QA   V  ++ +NR+ +   +SH R ++     ++ + + PRQL    WG ICP  T
Sbjct: 465 --HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLARPRQLHNTHWGMICPAET 519

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS    PS +L      L    M  L  +  S  + A  + ++
Sbjct: 520 PEGQAVGLVKNLALMAYISVGSQPSPIL----EFLEEWAMENLEEISPSAIKDATKIFVN 575

Query: 544 GRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           G  VG   D  Q+  +L    R + I+  ++    +I    R ++       + ++T  G
Sbjct: 576 GCWVGIHRDPEQLILTLRRLRRQMDIIVSEVSMVRDI----RDKE-------IRIYTDAG 624

Query: 602 RMLRPV----------------------MN-------LAAGNIEWIGTFEQVFMDICITM 632
           R+ RP+                      MN       ++ G +E+I   E+    I +++
Sbjct: 625 RVCRPLLIVENQKLLLKKSHVDQLKEREMNNFGWQDLVSKGVVEYIDVNEEETAMIAMSL 684

Query: 633 KE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
           ++       Y    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG    N
Sbjct: 685 EDLEEREHKYSSTYTHSEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITN 744

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
           +  +     + L  P  P       D L     P G N+IVA+ SYTGY+ ED+++LN S
Sbjct: 745 FHVRMDTLAHVLYYPQKPLVTTRSMDFLKFRELPAGINSIVAIASYTGYNQEDSVLLNAS 804

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           +  RG     +++S+F      Y  Y  E    G+D                       +
Sbjct: 805 AINRG-----LYRSVF------YRSYRDEESRKGLDQ---------------------EE 832

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL--------------NERDPMYSYWKES 852
           K++  +         A+ DKL  DGL+  G+++              ++ D   S  K  
Sbjct: 833 KFEKPNRDETTGMRAAIYDKLDDDGLIPPGSRVSGDDVIIGKTVTLPDDEDETDSQAKHF 892

Query: 853 ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
           + R  +      E   V+ V ++    E G        I  R  R P +GDKFASR GQK
Sbjct: 893 KKRDASTFLRASETGIVDQVMLT--INEEGY---KFCKIKVRSVRIPQIGDKFASRHGQK 947

Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           G C + +  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 948 GTCGITYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHL 986



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
           P EAR     YS P  V ++ +         T+E     +G++PIML+S  C L  L   
Sbjct: 114 PNEARLRNLTYSAPLYVDISKTITRSGQEPETEEHSKIYIGKIPIMLRSTYCVLSGLVDR 173

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
            L E  E P + GGYFI+ G EK++
Sbjct: 174 DLTELNECPLDPGGYFIINGSEKVL 198



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E +Y+G  G  + AQ+F G  +YQRL+HMV DK  ++
Sbjct: 1022 EYGYHLRGNEVLYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSR 1067


>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Cucumis sativus]
 gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Cucumis sativus]
          Length = 1199

 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 168/610 (27%), Positives = 260/610 (42%), Gaps = 105/610 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 439 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 491

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 492 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 547

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               I   L   G      +  ++  QA  + ++G  VG   D     ++ K        
Sbjct: 548 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRD---PEMLVKTLRRLRRR 604

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +   + +V   R ++       L ++T  GR  RP+  +                   
Sbjct: 605 VDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRE 657

Query: 611 -----------AAGNIEWIGTFEQVFMDICITMK----------EAYPGITTHRELSKTD 649
                      A G IE+I T E+    I +T+           EAY    TH E+  + 
Sbjct: 658 SPEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQARINPVEAYSDTYTHCEIHPSL 717

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 718 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 777

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 778 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 826

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
             Y  E    G                      +V + +   D            DKL  
Sbjct: 827 RSYRDEEKKMGT---------------------LVKEDFGRPDRSNTMGMRHGSYDKLDD 865

Query: 830 DGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           DGL   G +++  D +        + E +    RYS + +  + +    +G  +   +T 
Sbjct: 866 DGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAARYS-RRDHSISLRHSENGIVDQVLLTT 924

Query: 887 NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH 
Sbjct: 925 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 984

Query: 942 FPSRMTIGFL 951
            PSRMTIG L
Sbjct: 985 IPSRMTIGQL 994



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V+        DG+       FTK  +G+VPIML+S  C L 
Sbjct: 118 FPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 177

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 178 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 223



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1031 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1080


>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1188

 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 169/610 (27%), Positives = 262/610 (42%), Gaps = 105/610 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           KE ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 432 KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 484

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 485 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 540

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               I   L   G      +  S+  QA  + ++G  VG   D     ++ K        
Sbjct: 541 AAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRD---PDMLVKTLRRLRRR 597

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +   + +V   R ++       L ++T  GR  RP+  +                   
Sbjct: 598 VDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRE 650

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      A G IE+I T E+    I +T+          +EAY    TH E+  + 
Sbjct: 651 SAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSL 710

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 711 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 770

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 771 AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 819

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
             Y  E    G                      +V + +   D            DKL  
Sbjct: 820 RSYRDEEKKMGT---------------------LVKEDFGRPDRGSTMGMRHGSYDKLDD 858

Query: 830 DGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           DGL   G +++  D +        + E +  + RY+ + +  + +    +G  +   +T 
Sbjct: 859 DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYT-RRDHSISLRHSETGMVDQVLLTT 917

Query: 887 NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH 
Sbjct: 918 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHA 977

Query: 942 FPSRMTIGFL 951
            PSRMTIG L
Sbjct: 978 IPSRMTIGQL 987



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V         DG+       FTK  +G+VPIML+S  C L 
Sbjct: 111 FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLF 170

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 171 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 216



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G E MY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1024 GYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1073


>gi|449523027|ref|XP_004168526.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like,
           partial [Cucumis sativus]
          Length = 750

 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 167/559 (29%), Positives = 249/559 (44%), Gaps = 103/559 (18%)

Query: 438 MAENINRMRYMSHFRAVHRGS-YFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNH 495
           M++ + R+ ++S    V R S  F++ R  S PR L+   WG +CP  TP+G  CGL+ +
Sbjct: 63  MSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKN 122

Query: 496 LTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
           L     ++     +    + S+   LG+  L L    +     + +V+ +GRI+G    +
Sbjct: 123 LALMTHVTT---DQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIFNGRILGK--HR 177

Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN---- 609
                   +RML+  G    K  E V +   EK       +Y+ +  GR+ RP++     
Sbjct: 178 RPQYFATGMRMLRRAG----KIGEFVSVFVNEK----QHCVYIASDGGRVCRPLVIADKG 229

Query: 610 ----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
                                 L  G IE++   E+    I +   EA P  TTH E+  
Sbjct: 230 VSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPE-TTHIEIEP 288

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
              L  +A LIP P  NQSPRN YQC MGKQ MG    N   +    LY L  P  P   
Sbjct: 289 FTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRPLLT 348

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + +  D    G NA VAV+SY+GYD+EDA+++NKSS +RGF    +FK        
Sbjct: 349 TKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKK------- 401

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW----QTKDYFGRDPANKAL 823
                     YS V+               Q+  +  +D+     + +D+ G     + L
Sbjct: 402 ----------YSSVN---------------QKYENNTADRIVRPNRNEDFTGN---MQIL 433

Query: 824 EDKLGPDGLVYVGAKL-------NERDPMYSYWKE----SENRYVTCR--YSGKEEMCVE 870
           +D    DGL   G  +       N++ P+ +         +N Y  CR  + G E     
Sbjct: 434 DD----DGLAAPGEIIRPNDIYVNKQSPIITKGSPLPGIPDNAYRPCRQIFKGSEGEPTV 489

Query: 871 VVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSG 930
           V R++    +   +   C     R  R P +GDKF+SR GQKG+C      ED PF++ G
Sbjct: 490 VDRVALSTDKNDCL---CIKFLIRQTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 546

Query: 931 LVPDIVFNPHGFPSRMTIG 949
           + PD++ NPHGFPSRMT+G
Sbjct: 547 ICPDLIMNPHGFPSRMTVG 565



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
           ++ G++Y G + +YSG+ G  +QA IF G ++YQ+L+HMV DK   +    R    +   
Sbjct: 606 IKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPT 665

Query: 825 DKLGPDGLVYVGAKLNERDPMYSY 848
           +    +G + VG    ERD + +Y
Sbjct: 666 EGRARNGGLRVGEM--ERDCLIAY 687


>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  196 bits (498), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 170/609 (27%), Positives = 272/609 (44%), Gaps = 104/609 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ +   +S
Sbjct: 319 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTFASTLS 371

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+    + 
Sbjct: 372 HLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAN 430

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
            + +      +     ++P +  IP QA  + ++G  VG  + +    LV  LR L+   
Sbjct: 431 PILEFLEEWSTENFEEISPAV--IP-QATKIFVNGCWVG--IHRNPELLVKTLRQLR--- 482

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
            ++  + E+  ++           L L+T  GR  RP+  +                   
Sbjct: 483 RQVDVNTEVGVIRDIR-----LKELRLYTDYGRCSRPLFIVEKQRLLIKKKHIRSLQQRE 537

Query: 611 ----------AAGNIEWIGTFEQVFMDICITMK----------EAYPGITTHRELSKTDF 650
                     A G IE++ T E+    I +T+           EAY    TH E+  +  
Sbjct: 538 TQDEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDEAYSETYTHCEIHPSLI 597

Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
           L   A++IP PD NQSPRN YQ  MGKQ MG    N++ +     Y L  P  P      
Sbjct: 598 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 657

Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F       +
Sbjct: 658 MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLFFR-----S 707

Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
           Y   E       G++++    FG  + +    M    +                DKL  D
Sbjct: 708 YRDEEKKM----GTLIKED--FGRPNRENTMGMRHGSY----------------DKLDDD 745

Query: 831 GLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN 887
           GL   G +++  D +        + E++    RY+ + +    +    SG  +   +T N
Sbjct: 746 GLAPPGTRVSGEDVIIGKTTPIAQDESQGQASRYT-RRDHSTSLRHSESGMVDQVLLTTN 804

Query: 888 C---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
                ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH  
Sbjct: 805 ADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAI 864

Query: 943 PSRMTIGFL 951
           PSRMTIG L
Sbjct: 865 PSRMTIGQL 873



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 161 FTKE-VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
           FTK  +G+VPIML+S  C L   +   L E GE P + GGYFI+ G EK++        N
Sbjct: 37  FTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTN 96

Query: 220 HPIAIKR 226
           H    K+
Sbjct: 97  HVYVFKK 103


>gi|429217659|ref|YP_007175649.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
           15908]
 gi|429134188|gb|AFZ71200.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
           15908]
          Length = 1172

 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 181/693 (26%), Positives = 284/693 (40%), Gaps = 125/693 (18%)

Query: 324 LTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQ 379
           + N  LPHL    +D   K   L  M  ++  +       D +D    + +   G L  +
Sbjct: 310 IDNQFLPHLGNKPEDRKKKAYFLGEMANRVLQLYLNKRGEDDKDHYSNKRLRLAGDLIAE 369

Query: 380 LLKKE-KSGTSAVLKESDIYAA----------FRASSIESAMTNFLATGNVSAGKNSTLQ 428
           + +   +   + V  + + Y +           R+  I   +   LATGN +  +    Q
Sbjct: 370 IFRDAFQQFVNTVSSQLEEYISQRKKLRLRFLVRSDIITERIRAALATGNWTQNRTGVSQ 429

Query: 429 LMQASGFVIMAENINRM-----RYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
            +  + ++ +  ++ R+     R  +HF               E R L    WG +CP  
Sbjct: 430 ALDRTNWISLLSHLRRVISPLSRGQTHF---------------EARDLHGTHWGRLCPFE 474

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ------- 536
           TP+G  CGL+ +L     IS  +  K   ++  +L + G++ +  +I+   E        
Sbjct: 475 TPEGINCGLVKNLALMTYISVGVDEK---EVERILRNQGVILMDEIIKMSSENNDITNLV 531

Query: 537 --ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGL 594
                V L+G  +GY+  +    L  KLR ++  GE +   + I  +K      G    +
Sbjct: 532 NNGAKVFLNGSPIGYV--ENGDELARKLRDMRRKGE-LSFEVGISLIKE-----GNTNEV 583

Query: 595 YLFTGPGRMLRPVMNLAAGN-------IEWIGTFEQVFMDIC-------ITMKEAYPGI- 639
           Y+ T  GR+LRP++ +  G        +  +   E  F D+        I   E    I 
Sbjct: 584 YINTDEGRLLRPLIVVDKGKPRLTKEMVSKVKNGELSFWDLVRMGVIEFIDPDEEENAIV 643

Query: 640 ----------TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
                     TTH EL  T      A+ IP  + NQSPRN YQ  M KQ +G   LN+  
Sbjct: 644 AERIEDINNDTTHLELWVTGIFGVAASTIPFLEHNQSPRNTYQSAMAKQALGLYALNYNL 703

Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
           +     Y L  P  P  +  H + +  +  P G N I+A +S+TGY++EDA+I NK+S +
Sbjct: 704 RVDSHGYLLHYPQRPIVQTRHLEEMGYNQRPSGQNFILAFMSFTGYNIEDAIIFNKTSID 763

Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
            G      F+           Y  TE  Y G                       +SD+  
Sbjct: 764 MGLGRAHFFRV----------YASTENDYPG----------------------GLSDRIT 791

Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES------ENRYVTCRYSG 863
                  D        KLGPDG+V   A++   D +    +ES      E R +      
Sbjct: 792 VPSPKLYDHKGDQYYIKLGPDGIVEPEAEVVGGDVLVG--RESPPRFIGEERVIGPGVLS 849

Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSVK 918
           K +  V++    SG  +   +T          +  R  R P +GDKFASR GQKG+  + 
Sbjct: 850 KRDTSVQLRYGESGVVDTVFITQTSERNKLVKVKVRDLRIPELGDKFASRHGQKGVVGML 909

Query: 919 WPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           +P  D+P+T+ G+ PDI+ NPHG PSRMT+G L
Sbjct: 910 FPRYDMPYTEDGITPDIIVNPHGIPSRMTVGQL 942



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 12/153 (7%)

Query: 68  LGAPHIASFDFMLDEGLDLAVEDIAPI----------EFEIYGKTLKLNIVKAAISEPKV 117
           L   H+ SF+  + E L   ++    I          E    G  +++ + +  I +P++
Sbjct: 26  LSRQHLDSFNSFVKERLQKIIDSYGEIRPAFKQVKKNEISEEGPDIRVVLGRIKILDPQI 85

Query: 118 PAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRC 177
                        P EAR     YSGP  + +A   +G        ++   PIM+KS   
Sbjct: 86  KEADGNTRL--ITPAEARIRNLTYSGPLYLEMALIENGNEIEREELKIADFPIMVKSVVD 143

Query: 178 HLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
            +      +LI +GE P + GGYFI+ G E+++
Sbjct: 144 PISKYKEDELINKGEDPYDPGGYFIINGSERVI 176



 Score = 44.7 bits (104), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 762  FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
             + ++ G++  G E MY G  G +++  I  G+  YQRL HMVSDK   +
Sbjct: 973  LVLVKKGFDPNGKEVMYDGRTGRLIENTITIGIAFYQRLYHMVSDKMHAR 1022


>gi|391870940|gb|EIT80109.1| RNA polymerase III, second largest subunit [Aspergillus oryzae
           3.042]
          Length = 1008

 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 227/893 (25%), Positives = 374/893 (41%), Gaps = 193/893 (21%)

Query: 168 VPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
           +P+ML+S +C L + TPA++    E P + GGYFIV G EK+            I ++  
Sbjct: 1   MPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKV------------ILVQEQ 48

Query: 228 AWKNRGLLFSD------------------LGVYIRSVKRDESATNNVLH----FVTNGSA 265
             KNR ++ +D                     YI   K      +NVL      V    A
Sbjct: 49  LSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLYVKHNVLSEDIPIVILLKA 108

Query: 266 RFMFSHRKSMCLLGMMQSLHEE------------GIHTQHDSKVFFGQIFK----EKLQY 309
             + + ++ + L+  +  +++E            GI+TQ  +  + G   K    ++  Y
Sbjct: 109 MGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRIKINRGKQNNY 168

Query: 310 DLRHLNE-VEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDS 364
              H+ E VE     + + I+ H++    ++  K + ++HM  ++         +D  D 
Sbjct: 169 RRTHVQEAVE----AIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDY 224

Query: 365 IMLQEIMTGGSL----YLQLLKK----EKSGTSAVLKESDIYAAFRASSIESAMTNFLAT 416
           +  + +   G L    +  L KK     K     VL + +   AF A ++ S  +N +  
Sbjct: 225 LGNKRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQ 284

Query: 417 G---NVSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQ 470
           G    +S G  S  +  M+ +G   +   ++R+ Y++    + R  S F++ R  S PR 
Sbjct: 285 GMNRAISTGNWSLKRFRMERAG---VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRA 341

Query: 471 LRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
           L+   +G +C   TP+G  CGL      + H+TTN    E  P      I +++  LG  
Sbjct: 342 LQPSQFGMLCLADTPEGEACGLVKNLALMTHITTN---DEEGP------IRNLIFMLGAE 392

Query: 525 PLTPV--IQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLK 582
            ++ +   +        + ++G  +   L +   S +   R L+ +G +I + + I Y+ 
Sbjct: 393 DISTLGGKELYGPGCYTISINGTPMA--LTRRPKSFLNAFRRLRRMG-RISEFVSI-YIN 448

Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPVMN--------------------------LAAGNIE 616
             ++       +++ T  GR+ RP++                           LA G +E
Sbjct: 449 HHQRA------VHVATDDGRICRPLIVVENGKNRVRSHHLKKLREGTMSFDDFLAQGLVE 502

Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
           ++   E+    I I  K+     TTH E+     L  +A LIP P  NQSPRN YQC MG
Sbjct: 503 YLDVNEENDSLIAIYEKDITEA-TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMG 561

Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
           KQ +G    N   +    LY +  P  P  +    +    D  P G NA+VAV+SY+GYD
Sbjct: 562 KQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYD 621

Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFF-GVV 795
           +EDA++LNK S                                 VD    + Q+F   V 
Sbjct: 622 IEDALVLNKGS---------------------------------VDRGFGRCQVFKKSVA 648

Query: 796 HYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAKLNERDPMYSYWKESEN 854
           + +   +   D     +Y    P  K AL   L  DGL  VG ++N  +   +  K + +
Sbjct: 649 NLKSYSNGTKDILMPPEYDNDAPIRKHAL---LESDGLAAVGEQVNAGEVYIN--KSTPD 703

Query: 855 RYVTCRYSGKE------------------EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ 896
           + +   + G +                     ++ V +S+   E   +      +  R  
Sbjct: 704 QSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIK-----VLTRQT 758

Query: 897 RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           R P VGDKF+SR GQKG+  +     D+PFTD G+ PDI+ NPHGFPSRMT+G
Sbjct: 759 RRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVG 811



 Score = 48.9 bits (115), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
           I ++ G++Y G + + SG+ G  +   +F G ++YQ+L+HMV DK  ++    R    + 
Sbjct: 845 ILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQ 904

Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
             +    DG + +G    ERD + +Y              G  ++ +E + +SS   E  
Sbjct: 905 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GTSQLLLERLMISSDRHE-I 947

Query: 883 SVTPNCAYIGY 893
            V   C ++GY
Sbjct: 948 DVCEQCGFMGY 958


>gi|111610540|gb|ABH11666.1| RNA polymerase II second largest subunit, partial [Ustilago
           tritici]
          Length = 635

 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 173/634 (27%), Positives = 274/634 (43%), Gaps = 127/634 (20%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
           +E  I AA ++S+I + +   LATGN    K +    MQA   V  ++ +NR  + S   
Sbjct: 42  REFHIQAAVKSSTITNGLRYSLATGNWGDQKKA----MQAKAGV--SQVLNRFAFASTLS 95

Query: 453 AVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            + R +    ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+    ++   PS  
Sbjct: 96  HLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPS-- 153

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
            A I   L   G+  L   +Q    +A  + ++G  +G   D     LV  LR L+   +
Sbjct: 154 -APIVEFLEEFGLDSLVD-MQLAHAKATKIFVNGVWMGTHDD--PAQLVDTLRDLR-RKD 208

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV-------MNL------------- 610
            I   + +V   R  +       L ++T   R+LRPV       M L             
Sbjct: 209 DISHEVSVVRDIRERE-------LRIYTDASRVLRPVFIVNPHDMTLLIKKRHVEMIGQT 261

Query: 611 --------------AAGNIEWIGTFEQVFMDICITMKE---------------------- 634
                           G IE++   E+  + IC++  +                      
Sbjct: 262 IPQTGEEFRWTHLVQEGVIEYLDAEEEESVLICMSTTDLEQSREYKARNGQINLNSADPS 321

Query: 635 --------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
                     P   TH E+     L   A+++P PD NQSPRN+YQ  MGKQ +G P  N
Sbjct: 322 ARLKSIHTIAPDTWTHCEIHPAMVLGICASIVPFPDHNQSPRNVYQSAMGKQAIGIPISN 381

Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
           +  +     + L  P  P       + L     P G NAIVA++ Y+GY+ ED++I+N+S
Sbjct: 382 FISRADSMNHILYYPQKPLGTTRSMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQS 441

Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
           S +RG     +F+S++      Y  Y  E    GV    MQ + F      ++     + 
Sbjct: 442 SIDRG-----LFRSLY------YRGYMAEEKKVGV----MQLEEF------EKPHRDTTI 480

Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYS 862
           + +   Y           DK+  DGL   G +++  D +         +SE   +  +  
Sbjct: 481 RMKHGTY-----------DKIDADGLCAPGTRVSGDDVIIGKTAPLPPDSEELGMRSKLH 529

Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSV 917
            K++  + +    +G  +   +T N     ++  R++  R P  GDKFASR GQKG   +
Sbjct: 530 TKKDASISLKSTENGIIDQVLLTTNSHGNKFVKVRVRNSRVPQTGDKFASRHGQKGTIGI 589

Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            +  ED+PF+  G+ PDI+ NPH  PSRMTIG L
Sbjct: 590 TYRQEDMPFSTEGVTPDIIINPHAIPSRMTIGHL 623


>gi|406699010|gb|EKD02230.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
           8904]
          Length = 941

 Score =  196 bits (497), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 182/703 (25%), Positives = 300/703 (42%), Gaps = 115/703 (16%)

Query: 304 KEKLQYDLRH-LNEVEICDYMLTNCILPHLD----DYWDKFLCLSHMTCKLFHVVQGMVQ 358
           +EK    L H L   ++    L   +L H+     ++  K + L+ M+ ++   +     
Sbjct: 106 QEKEDRSLGHKLTPTDMAMQALAAMVLGHVPVRDMNFRPKAIYLATMSRRVLAAMLDENM 165

Query: 359 LDSEDSIMLQEIMTGGSLYLQLLKKE--------KSGTSAVLKESDIYAAFRASS----- 405
           +D  D +  + +   G L   L +          K     +L++      F AS+     
Sbjct: 166 VDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSDLKKRMDKILEKKTRAGPFDASTLVRTG 225

Query: 406 ----IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYF 460
               I SA    ++TGN S  +     + +A     +   ++R+ +++    + R  S F
Sbjct: 226 GGDIITSAFVRSISTGNWSLKR---FHVERAG----VTHVLSRLSFIAALGMMTRITSQF 278

Query: 461 QEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLV 519
           ++ R  S PR L+   WG +CP  TP+G  CGL+ +L     I+  +P   L ++  VL 
Sbjct: 279 EKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVPEDPLIKLAFVLG 338

Query: 520 SLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIV 579
           +   + L    +   +   +V ++G ++G  +  +    V   R L+  G         +
Sbjct: 339 AED-ISLATGNELYRDGVHLVQVNGNLIG--VTALPRKFVRTFRKLRRSGRT--SEFVSI 393

Query: 580 YLKRPEKGMGLYPGLYLFTGPGRMLRPVMN--------------------------LAAG 613
           Y+   ++       +Y+ +  GR+ RP++                           L +G
Sbjct: 394 YINHHQRV------IYIASDGGRICRPLIIVENGRPRVTSEHMQLLKAGKVTFDHFLRSG 447

Query: 614 NIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            +E++   E+    I     E     TTH E+     L  +A LIP P  NQSPRN YQC
Sbjct: 448 LVEYLDVNEENDSFIACYESEITED-TTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 506

Query: 674 QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
            MGKQ +G    N   +    LY +  P  P  +    + +  D  P G NA VAV+SY+
Sbjct: 507 AMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELVGYDRLPAGQNATVAVMSYS 566

Query: 734 GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG 793
           GYD+EDA+I+N++S +RGF    + K   I + S  N  GT                   
Sbjct: 567 GYDIEDALIVNRASADRGFGRCHVLKKQTIPIRSFPN--GTS------------------ 606

Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
               +RL  +  D+          P   +  D+   DGLV  G+ +++ D + +     +
Sbjct: 607 ----ERLAMLPPDQR---------PETHSWLDQ---DGLVAPGSVVSQGDVLAARETPMD 650

Query: 854 NR-------YVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFA 906
            R       +     + K      + ++    TE G+       I  R  R P +GDKF+
Sbjct: 651 TRGPGPTVGFKATPVAHKLPEPTNIDKVMVTDTEDGN---QLIKILTRQTRRPELGDKFS 707

Query: 907 SRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           SR GQKG+C +  P +D+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 708 SRHGQKGVCGLIVPQQDMPFNDQGICPDIIMNPHGFPSRMTVG 750



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 740 AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
            ++  K  Y   F    +     I +++G++Y G +T+ SG+ G  ++  ++FG ++YQ+
Sbjct: 761 GLMAGKLQYGTAFGGSKVVDMSQILIDAGFSYAGKDTLTSGITGESLETYVYFGPIYYQK 820

Query: 800 LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
           L+HMV DK   +    R    +   +    DG + +G    ERD +  Y
Sbjct: 821 LKHMVMDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEM--ERDCLIGY 867


>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma
           vivax Y486]
          Length = 1186

 Score =  195 bits (496), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 255/1009 (25%), Positives = 400/1009 (39%), Gaps = 190/1009 (18%)

Query: 59  DKQNEFLLTLGAPHIASF--------DFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKA 110
           D  N+FLL +  P +A          D   + G+ L   D+ P ++       +L++   
Sbjct: 58  DSYNDFLLRI--PRMARSLLEVVPRQDSQFEPGMQL---DVEPDQY-------RLSLEDV 105

Query: 111 AISEPK-VPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT----VAWSWDGKAGGTFTK-- 163
            +  P    +G      +  +P E R     Y     VT    V  S + +   TF +  
Sbjct: 106 VVGNPSHETSGFSRQEMHPLFPNECRLRDMTYDANAQVTLGIRVYRSREEQPYRTFLQNM 165

Query: 164 EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIA 223
           E+GR+PIMLKS RC+L      +L    E P + GGYFI+ G EK++        NH  A
Sbjct: 166 ELGRIPIMLKSIRCNLLYKDEDELPRLNECPHDQGGYFIINGTEKVLVAQERQAANHVYA 225

Query: 224 IKRNA-------------------------WKNRGLLFSDLGVYIRSVKRDESATNNVLH 258
             R                           +K  G       +  R  + DE     VL 
Sbjct: 226 FTRPKGLLCEIKSIVEGSLNKPRTFQIIMPYKKTGPGHGYENLLCRVAQMDELIPLFVLF 285

Query: 259 FVTN-GSARFMFS----HRKSMCLLGMMQSLHEEG----IHTQHDSKVFFG-----QIFK 304
              + GS R +        K   +L M++   E+     I T+ ++  F G     Q  +
Sbjct: 286 RALDMGSDREILQTVVPDLKDAAMLEMLRGSMEDASTLQIFTRDEALWFIGKRLGRQDSR 345

Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHL--DDYWDKFLCL--SHMTCKLFHVVQGMVQLD 360
           E LQ + + L         L   +LPH+  D   D+  CL   +M  +L  +  G  +  
Sbjct: 346 ENLQREAQGL---------LMRDLLPHMGVDCTADRGKCLFIGYMVHRLLLLALGRREDT 396

Query: 361 SEDSIMLQEIMTGGSL-------YLQLLKKEKSGTSAVLKES-----DIYAAFRASSIES 408
             D +  + I   G+L       +L  ++KE S T      S            +  I  
Sbjct: 397 DRDFLGHKRIDVAGALLTFQLNHFLVQVRKEMSKTVHDYSTSRGGVVSFAKILHSRLITD 456

Query: 409 AMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR--GSYFQEMRSS 466
            M   LATGN    K+  ++         +++ +NR+ Y S    + R         +++
Sbjct: 457 GMRRCLATGNFGDLKSGNIK-------TGVSQTLNRLTYSSSLSNLRRIQNPISASSKAT 509

Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLV----SLG 522
            PR L    WG+ICPV TP+G   GLL +L   C IS       +AQ     +    S+G
Sbjct: 510 RPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTSVAQTVQARITGFHSVG 569

Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIA-----------------TSLVPKLRML 565
           +  L  V      +   V ++G ++G   D                     S+V  +R  
Sbjct: 570 LSDLADV------RLARVFVNGTLIGVHRDPERLLRELRARRRGGELSNEVSIVRDIRDR 623

Query: 566 KI-----VGEKIPK--SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWI 618
           +I      G  I     +E   LK  + GMG         G  R +     +  G +E I
Sbjct: 624 EIRVFSDAGRCIRPLFVVEKSSLKLRKAGMGELLEPSRAPGGQRQISWNRVMKRGYVELI 683

Query: 619 GTFEQVFMDICITMKEAYPG-ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
              E+  + I +   E       +H E+  +  L   A++IP P+ NQSPRN YQ  MGK
Sbjct: 684 DCEEEDSLLIAMAPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGK 743

Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
           Q MG    N+  +     + L  P  P  R      +  ++ P G NA+VA+  Y+GY+ 
Sbjct: 744 QAMGIYASNFNMRMDTTAHILFYPQKPLVRTKAMSYMRSNDLPAGHNAVVAIACYSGYNQ 803

Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
           ED++I+++S+ ERGF     F+S+F               Y   + +  + +  F V   
Sbjct: 804 EDSIIMSRSAVERGF-----FRSVFWR------------SYKASEENKKEGKEVFEVPD- 845

Query: 798 QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWK 850
           +++ H+     +  DY            KL  DGL+  G  +   D       P+    +
Sbjct: 846 RKICHV-----KRADY-----------SKLDTDGLIKPGMPVMGGDILVGKTVPIPESMR 889

Query: 851 ESENRYVT------CRYSGK--EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVG 902
           E+     T      C  S +  E+  V+ V ++    +G   T     +  R  + P +G
Sbjct: 890 ENATTANTRIMKRDCSISSRTAEKGVVDKVMLTE--NKGNRFTK----VKVRTIKIPNIG 943

Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           DKF SR GQKG   +++  ED+PF   G+ PD++ NPH  PSRMT+  L
Sbjct: 944 DKFCSRHGQKGTNGIQFRQEDMPFNSDGISPDLIINPHAIPSRMTVAHL 992



 Score = 43.5 bits (101), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 772  YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
            YG E +Y+G  G  ++  IFFG  +YQRL+H+  DK   +      P  +   +    +G
Sbjct: 1033 YGNECLYNGHTGLPLEHLIFFGPTYYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEG 1092

Query: 832  LVYVGAKLNERDPMYSY 848
             +  G    ERD M SY
Sbjct: 1093 GLRFGEM--ERDCMLSY 1107


>gi|253741841|gb|EES98701.1| DNA-directed RNA polymerase subunit B' [Giardia intestinalis ATCC
            50581]
          Length = 1239

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 179/659 (27%), Positives = 273/659 (41%), Gaps = 113/659 (17%)

Query: 355  GMVQLDSEDSIMLQEIMTGGSL--------YLQLLKKEKSGTSAVLKES----------D 396
            G+++ DS+D +  ++I T G L        +  LL         +L+            D
Sbjct: 435  GVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMARKVDVILRSDKNRGTDLTNYD 494

Query: 397  IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
            + +    S I  A  + ++TGN    +    +       V +++ ++R+ Y+S    V R
Sbjct: 495  VVSLVDPSIITRAFNSAISTGNWKIERIGVDR-------VGVSQVLSRLSYISTLGQVTR 547

Query: 457  --GSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
               ++ + M+SS PR L     G  CP  TP+G   G++ +L+   +IS+    +    I
Sbjct: 548  LSSTFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARISK---DENADSI 604

Query: 515  PSVLVSLGMLPLTPVIQSIPEQ---ALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK 571
              +L+S+G+  L               MV L+G I G I   +    +  LR  +  G  
Sbjct: 605  SKLLMSIGVEDLASCWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFIITLRTFRRKGY- 663

Query: 572  IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------NLAAGNIEWIGTFEQV 624
                  I YL         +  +Y+    GR  RP++        L   +IE +   ++ 
Sbjct: 664  ------ISYLTSFHFN-DEHQAVYINCDSGRACRPLLIVENGKLKLTLNDIELLVNNQKC 716

Query: 625  FMDICITMKEAYPGIT------------------THRELSKTDFLSNLANLIPMPDCNQS 666
            F+D     K  Y  +                   TH E+     L  +  LIP P  NQS
Sbjct: 717  FVDFIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLLGYVVGLIPYPHHNQS 776

Query: 667  PRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAI 726
            PRN YQC MGKQ  G    N   +    ++ L  P  P            +  P G NA 
Sbjct: 777  PRNCYQCSMGKQASGAIAFNQFERFETAMFLLDYPQRPLTSTKILKLTGYERLPAGQNAT 836

Query: 727  VAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMM 786
            V V+SY+ +D+EDA+ILN+S+ +RGF    I++S+  EL S        T    VDG+  
Sbjct: 837  VCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAELNS--------TGSKSVDGT-- 886

Query: 787  QAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD--- 843
               +  G                 KD+  +  +  A+ED    DGL  VGA L   D   
Sbjct: 887  -KDVLLG---------------PPKDHLKQYESYHAVED----DGLCAVGAHLKTGDIVI 926

Query: 844  ---------PMYSYWKESENRYVTCRYSGKE--EMCVEVVRMSSGFTEGGSVTPNCAYIG 892
                     P  S   E+    +    S K   E    + ++       G++      + 
Sbjct: 927  NKGRHVTNIPGLSDGPEAAETLIKSPESLKSPLETITYIDKVLVTTNNDGNL---LIKVL 983

Query: 893  YRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             R  R P VGDKF+SR GQKG+C +     DLPFT  G+VPD++ NPHG+PSRMT+  L
Sbjct: 984  TREPRRPEVGDKFSSRHGQKGVCGLIVSQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKL 1042



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 72  HIASFDFMLDEGLDLAVED----IAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFN 127
           H+ SF+ +LD  +   +++    +       Y +  K+++ + +    K P    G +  
Sbjct: 38  HLDSFNHLLDVTIPAIIKENPLLVVAKHPHFYLRIEKVDVKQVSHGSSKSPGSSTGGNVG 97

Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIMLKSKRCHLRNLTPA 185
              P E RQ    Y+ P  + V      K+   + K++  G +PIML+S RC L N +  
Sbjct: 98  -LTPHECRQRNMTYAAPITIDVRCRASNKSSVQYYKDICIGYIPIMLRSNRCILANKSRK 156

Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKN 231
           Q     E PD+ GGYFIV G EK + LL      + I + RN   N
Sbjct: 157 QQAFFQECPDDPGGYFIVRGAEKSI-LLAEQITMNRIVLGRNTDGN 201



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 11/82 (13%)

Query: 741  MILNKSSYERGF-AHGCIFKS-----MFIEL-----ESGYNYYGTETMYSGVDGSMMQAQ 789
            ++ NKSS  RG    G  F++        EL      +G++Y G + +YSG+ G ++   
Sbjct: 1045 LLSNKSSCFRGEQTDGTCFRTKTDEEFIAELYDSLRAAGFSYSGKDVLYSGLTGDVIPVY 1104

Query: 790  IFFGVVHYQRLRHMVSDKWQTK 811
            IF G ++YQ+L+HMV DK  ++
Sbjct: 1105 IFNGPIYYQKLKHMVKDKIHSR 1126


>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
           14429]
 gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
           14429]
          Length = 1141

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 186/681 (27%), Positives = 300/681 (44%), Gaps = 98/681 (14%)

Query: 317 VEICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMT 372
           +E    +L    LPHL    D    K L +  M   +  +  G  Q D +D I  + +  
Sbjct: 313 IERAKQVLDRYFLPHLGTTEDARIKKALMVGQMVKGVIEMYLGRRQPDDKDHIANKRVRL 372

Query: 373 GGSLYLQL-----------LKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSA 421
            G L  QL           ++++     +  K   +    RA  I   + + +ATGN   
Sbjct: 373 VGDLMAQLFRAVFRQVLQDIRQQLERHYSRGKIPSLVTLVRADIITERVRHAIATGNWIG 432

Query: 422 GKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
           G+    Q++         +  N M  +SH R V   +  +     E R L    WG +C 
Sbjct: 433 GRTGVSQML---------DRTNIMSTLSHLRRVV-SNLSRTQPHFEARDLHPTQWGRLCA 482

Query: 482 VHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPE--QALM 539
           + TP+G  CGL+ +L     I+  +      ++  +L  LG++   P++++  E  +   
Sbjct: 483 IETPEGQNCGLVKNLALLSTITVGVDEN---EVEKLLYDLGVV---PILRARKEGVKGTE 536

Query: 540 VMLDGRIVGYIL--DQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE---KGMGLYPGL 594
           V L+GR++G     D++ +++    R  +I  E     +   YL        G  L   L
Sbjct: 537 VYLNGRLIGVHTEPDKLVSTIREMRRRGQINHEINVARIRNEYLDEVRVNCDGGRLRRPL 596

Query: 595 YLFTGPGRMLRP--VMNLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITT 641
            +       LRP  V  L  G            IE++   E+    + I  +E      T
Sbjct: 597 IIIENGKPKLRPEHVEKLRKGEWTWSDLISNGIIEYLDGDEEENALVAINPEEDMSKY-T 655

Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
           H E+  +  +  +A++IP  + NQSPRN+Y+  M KQ++G P  N+R++   + + L  P
Sbjct: 656 HMEVIPSVMIGAVASIIPYAEHNQSPRNIYEAAMAKQSLGFPAANYRFRMDSRGHLLIYP 715

Query: 702 ASPFFRPVHYDTLDMDNF---PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
             P    V    ++++ +   P G NA+VA+++YTGY+MEDA+ILNKS+ ERG     ++
Sbjct: 716 ERPL---VITRGIELNGYLERPAGQNAVVALLTYTGYNMEDAVILNKSAIERG-----MY 767

Query: 759 KSMFIELESGYNYYGTETM-YSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
           +S+F      +  Y TE M Y G +   ++                     + + Y G +
Sbjct: 768 RSVF------FRTYETEQMRYPGGEEDRIEIP-----------------SAEVRGYKGPE 804

Query: 818 PANKALEDKL-GPDGLVYVGAKL-NERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
                 ED +  P+  V  G  L  +  P   Y   +E    T   S + +  + V R  
Sbjct: 805 AYAHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYGVYTE----TVVSSARRDSSITVRRGE 860

Query: 876 SGFTEGGSVTP-NCAY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSG 930
            G  +   VT  N  Y    +  R  R P +GDKFASR GQKG+  +  P +D+PFT+ G
Sbjct: 861 KGIVDSVVVTETNEGYKLVKVKVRELRIPELGDKFASRHGQKGVMGMMIPMQDMPFTEDG 920

Query: 931 LVPDIVFNPHGFPSRMTIGFL 951
           + PDI+ NPH  PSRMT+G L
Sbjct: 921 ITPDIIVNPHALPSRMTVGQL 941



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 4/139 (2%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
            I SF+  +++ L   V +   IE E+ G  +KL  ++  + +P+V       H    YP
Sbjct: 54  QIDSFNDFVEKKLQEIVNENNIIETEVKGLYIKLERIE--VGKPRVREADASEHI--LYP 109

Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
            EAR     Y+ P  +T+    + +        +G +PIM++SK C+L  L   +LI + 
Sbjct: 110 MEARLRNLTYAAPLYLTMVLYVNDEEVDRQKVYIGDLPIMVRSKFCNLYGLKRQELISKL 169

Query: 192 EHPDEWGGYFIVGGHEKLV 210
           E PD+ GGYFI+ G E+++
Sbjct: 170 EDPDDPGGYFIINGSERVI 188



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            + SG+ + G E MYSG+ G  ++A IF GVV+YQ+L HMV+DK   +
Sbjct: 975  IRSGFRWDGKEVMYSGLTGRKLEADIFIGVVYYQKLHHMVADKIHAR 1021


>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
           [Glycine max]
          Length = 1192

 Score =  195 bits (495), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 170/618 (27%), Positives = 267/618 (43%), Gaps = 121/618 (19%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 434 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 486

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 487 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 542

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL--RMLKI 567
               I   L   G      +  ++  QA  + ++G  +G   D       P +  R LK 
Sbjct: 543 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWMGIHRD-------PDMLVRTLKK 595

Query: 568 VGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL----------------- 610
           +  ++  + E+  ++           L ++T  GR  RP+  +                 
Sbjct: 596 LRRRVDVNTEVGVVRDIR-----LKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQ 650

Query: 611 -------------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSK 647
                        + G IE+I T E+    I +T+          ++AY    TH E+  
Sbjct: 651 RESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHP 710

Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
           +  L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P   
Sbjct: 711 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 770

Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
               + L     P G NAIV++  Y+GY+ ED++I+N+SS +RGF     F+S+F     
Sbjct: 771 TRAMEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGF-----FRSLF----- 820

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANK----- 821
            +  Y  E    G                              K+ FGR D AN      
Sbjct: 821 -FRSYRDEEKKMGT---------------------------LVKEDFGRPDRANTMGMRH 852

Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGF 878
              DKL  DGL   G +++  D +        + E +    RY+ + +  + +    +G 
Sbjct: 853 GSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYT-RRDHSISLRHSETGI 911

Query: 879 TEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
            +   +T N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ P
Sbjct: 912 VDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 971

Query: 934 DIVFNPHGFPSRMTIGFL 951
           DI+ NPH  PSRMTIG L
Sbjct: 972 DIIVNPHAIPSRMTIGQL 989



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V+        DG+       FTK  +G+VPIML+S  C L 
Sbjct: 113 FPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTEAQDFTKVFIGKVPIMLRSSYCTLY 172

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 173 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 218



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1026 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1075


>gi|412992275|emb|CCO19988.1| DNA-directed RNA polymerase III subunit RPC2 [Bathycoccus prasinos]
          Length = 1251

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 171/600 (28%), Positives = 262/600 (43%), Gaps = 100/600 (16%)

Query: 396  DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
            D+    R  +I + + + ++TGN +  +      M+  G   + + ++R+ ++S    + 
Sbjct: 499  DVVKCIRQDTISNGLEHAISTGNWTVKRFR----MERKG---VTQVLSRLSFISAIGMMT 551

Query: 456  R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCG------LLNHLTTN-------- 499
            R  S F++ R  S PR L+   WG +CP  TP+G  CG      L+ H+TT+        
Sbjct: 552  RITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDSDEEPLIK 611

Query: 500  ------CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
                  C++ E++  + L Q  S LV L    L  V Q  P+Q        R  G I + 
Sbjct: 612  LARALGCELLEHLAGEELHQKDSALVLLNGSILGSVSQ--PKQFADKFRKLRRSGRISEF 669

Query: 554  IATSLVPKLRMLKIVGEKIPKSLEIV-----YLKRPEKGM-GLYPGLYLFTGPGRMLRPV 607
            ++  +      +   G ++ + L +V      LK  +K +  L    ++F          
Sbjct: 670  VSVHVTKGFVHIASDGGRVCRPLIVVDETTGRLKMKQKHLDALKNKEWVFDD-------- 721

Query: 608  MNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSP 667
              L  G +E++   E+    I +  K+      TH E+     L   A +IP P  NQSP
Sbjct: 722  -FLKRGYVEYLDVNEENDAYIALHEKDLTADAHTHCEIEPFTLLGVCAGIIPFPHHNQSP 780

Query: 668  RNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIV 727
            RN YQC MGKQ MG    N   +    +Y L +   P       + +  D    G NA++
Sbjct: 781  RNTYQCAMGKQAMGNLAFNQLNRMDTLMYTLCSAQKPLVTTKTIELIQYDRLGAGQNAVI 840

Query: 728  AVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQ 787
            AV+S TGYD+EDA+++N++S +RGF             +    Y  T   Y+    +  Q
Sbjct: 841  AVLSNTGYDIEDAVVINRASLDRGFGR----------CQVSRKYSATMKKYA----NRTQ 886

Query: 788  AQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAK--------- 838
             ++         L+  ++   + K+Y       + L+D    DG   VG +         
Sbjct: 887  DKV---------LKPSITQMKKMKNY-------RVLDD----DGYAQVGVRIRNKDIYIN 926

Query: 839  ----LNERDPMYS--YWKESENRYVTCRYSGKE-EMCVEVVRMSSGFTEGGSVTPNCAYI 891
                LN RDPM +     + E R     Y G E + CV    M +   E   V       
Sbjct: 927  KHMPLNTRDPMTNPDQLPDREFRPAPQVYRGPEVDECVVDKVMLTVTDENQFVVKTLV-- 984

Query: 892  GYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
              R  R P VGDKF+SR GQKG+     P ED P T+ G+ PD+V NPHGFPSRMT+G L
Sbjct: 985  --RHTRRPEVGDKFSSRHGQKGVVGAILPQEDFPCTERGICPDLVMNPHGFPSRMTVGKL 1042



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-TLKLNIVKAAISEPKVPAGPVGIHFNKY- 129
           HI SFD+++DE +   V   A  +          L     ++  P+     V     K  
Sbjct: 69  HIESFDYLIDEEIKKIVSAKANNKVTCDSDPNFYLRYKNVSVGSPQT----VDERMVKQD 124

Query: 130 -YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
             P + R     Y+ P  V V ++       T    +G++P+ML+S RC LRN    +L 
Sbjct: 125 ITPQQCRLRDMTYAAPVMVDVEYTKGKDIITTHDVCIGKIPLMLRSSRCCLRNKGEDELA 184

Query: 189 ERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKR 248
             GE P + GGYF+V G EK++ L+      + + I+R+A   +GL+ + +     S   
Sbjct: 185 RLGECPLDPGGYFVVKGVEKVI-LIQEQLSKNRVIIERDA---KGLICASV---TSSTHE 237

Query: 249 DESATNNV 256
            +S TN V
Sbjct: 238 RKSKTNVV 245



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            L++GY   G ET+  G+ G  +QA+IF G V+YQ+L+HMV DK   +
Sbjct: 1091 LKAGYASDGKETLICGLTGEYLQARIFTGPVYYQKLKHMVLDKMHAR 1137


>gi|328853924|gb|EGG03059.1| hypothetical protein MELLADRAFT_49581 [Melampsora larici-populina
           98AG31]
          Length = 1135

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 198/771 (25%), Positives = 330/771 (42%), Gaps = 115/771 (14%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEP-KVPAGPVGIHFNKYY 130
           HI SF++ +D  L   +   A +  ++      L  +   + EP ++  G       +  
Sbjct: 38  HIDSFNYFVDVELKAILRANATVVSDV-DPNFHLTYLDINVGEPCRLDTGSAT--NKRIT 94

Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
           P E R     YS P +VT+ ++   K   +    +GR+PIML+S +C L N + A+L + 
Sbjct: 95  PHECRLRDITYSAPISVTIQYTKGNKRVLSKGIPIGRMPIMLRSNKCVLTNKSDAELAKM 154

Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLI-----------------NNRRNHPIAI 224
            E P + GGYF+V G EK++         R+LI                 + R++    +
Sbjct: 155 TECPLDPGGYFVVKGTEKVILVQEQLSKNRILIETDSRKGTIMASVTSSTHERKSKTYVV 214

Query: 225 KRNA--WKNRGLLFSDLGVYIRSVKRDESATNNVLHFV--TNGSARFMFSHRKSMCLLGM 280
            +N+  +     +  ++ V I       ++ N V+  V   N   R  FS    +C+   
Sbjct: 215 TKNSKVYLKHNSIQEEIPVVIALKAYGITSDNEVVQLVCGNNDDYRSTFS----ICI--- 267

Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDL----RHLNEVEICDYMLTNCILPHLD--- 333
            +  HE GI+TQ  +  + G+  K   +  +    R L+E  +   +L+  +L H+    
Sbjct: 268 -EQCHEAGIYTQKQALEYIGKSVKVMKKGPMVTVKRPLSEEAL--EVLSTVVLAHVPAEN 324

Query: 334 -DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK----E 384
            +   K L L+ M  ++   +     +D  D +  + +   G L    +  L KK     
Sbjct: 325 MNLQPKALYLAVMARRVIQAMANPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDL 384

Query: 385 KSGTSAVLK------ESDIYAAFR--ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFV 436
           K     +LK      E D    FR     I       ++TGN S  +      M+ +G  
Sbjct: 385 KMNIDKILKKPNRTTEFDAINQFRMHGDHISHGFIRAISTGNWSIKRFK----MERAG-- 438

Query: 437 IMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
            +   ++R+ Y+S    + R  S F++ R  S PR L+   WG +CP  TP+G  CGL+ 
Sbjct: 439 -ITHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVK 497

Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQI 554
           +L     I+  +  + +  +   +    +  +T     +P    +V ++G I+G  L + 
Sbjct: 498 NLALMTHITTDVDEEPIWNVAYTIGCEDISSVTGTELYLPRH-YIVFINGNILG--LSRS 554

Query: 555 ATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN----- 609
               V   R  +  G+        +Y+   ++ + +       T  GR+ RP++      
Sbjct: 555 PERFVKVFRQFRRAGQ--VSEFVSIYMNSDQQTVNIA------TDGGRICRPMIIVDHGV 606

Query: 610 ---------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKT 648
                                L AG IE++   E+    I +  +E     TTH E+   
Sbjct: 607 PRVTSSHIQLLKENKMCFDDFLTAGLIEYLDCNEENDSFIAL-YEEDVDQFTTHLEIEPF 665

Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
             L  +A LIP P  NQSPRN YQC MGKQ +G    N  ++    LY +  P  P  R 
Sbjct: 666 TLLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLHRIDTLLYLMVYPHHPMVRT 725

Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
              + +  D  P G NA VAV+SY+GYD+EDA+ILNK+S +RGF    +F+
Sbjct: 726 KTIELVGYDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFR 776



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
           R  R P +GDKF+SR GQKG+C +    ED+PF D G  PDI+ NPHGFPSRMT+G
Sbjct: 888 RQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFNDHGSCPDIIMNPHGFPSRMTVG 943



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 17/131 (12%)

Query: 763  IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
            I +E GY+Y G + + SG+ G  ++  +F G ++YQ+L+HMV DK   +    R    + 
Sbjct: 977  ILIEHGYSYLGKDYLTSGITGQALEHYVFMGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1036

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
              +    DG + +G    ERD + ++              G  ++ +E + +SS   E  
Sbjct: 1037 PTEGRSRDGGLRLGEM--ERDCLIAH--------------GASQLLLERLMISSDAFE-L 1079

Query: 883  SVTPNCAYIGY 893
             V  +C ++GY
Sbjct: 1080 DVCQDCGFMGY 1090


>gi|108885433|gb|ABG23223.1| RNA polymerase II second largest subunit, partial [Cintractia
           axicola]
          Length = 692

 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 175/627 (27%), Positives = 274/627 (43%), Gaps = 114/627 (18%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
           KE  I AA ++++I + +   LATGN    K +    MQA   V  ++ +NR  + S   
Sbjct: 39  KEFHIQAAVKSATITNGLRYSLATGNWGDQKKA----MQAKAGV--SQVLNRFAFTSTLS 92

Query: 453 AVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            + R +    ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+    ++   PS  
Sbjct: 93  HLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPS-- 150

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
            A I   L   G+  L   +Q    +A  V ++G  +G   D     LV  LR L+   +
Sbjct: 151 -APIVEFLEEFGLDSLVD-MQVTNAKATKVFVNGVWMGTHDD--PGQLVDTLRDLR-RKD 205

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGP---------------------------GRM 603
            I + + +V   R EK + +Y      T P                           G  
Sbjct: 206 DISQEVSVVRDIR-EKELRIYTDSSRVTRPLFIVNPHDMTLLIKKHHVQMIGQTTESGEE 264

Query: 604 LRPVMNLAAGNIEWIGTFEQVFMDICIT---------------------------MKEAY 636
            R    +  G IE++   E+  + IC++                           +K A 
Sbjct: 265 FRWTQLVQQGVIEFLDAEEEESVLICMSTTDLEQSREYKIRNGHVNFESADPSARLKSAL 324

Query: 637 ---PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
              P   TH EL     L   A++IP PD NQSPRN+Y+  M KQ++     N+  +   
Sbjct: 325 TIMPDTWTHCELHPAMVLGICASIIPFPDHNQSPRNVYESAMAKQSVSINISNFHTRHDT 384

Query: 694 KLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
             + L  P  P       + L     P G NAIVA++ Y+GY+ ED++I+N+SS +RG  
Sbjct: 385 MNHVLHYPQKPLGTTRSMEHLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRG-- 442

Query: 754 HGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
              +F+S++      Y  Y  E    GV    MQ + F      ++    ++ + +   Y
Sbjct: 443 ---LFRSLY------YRGYLAEEKKVGV----MQLEEF------EKPNRDITIRMKHGTY 483

Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCV 869
                      DKL  DGL   G +++  D +         +SE   +  +   K++  +
Sbjct: 484 -----------DKLDADGLCAPGTRVSGDDVIIGKTAPLPPDSEELGMRTKMHTKKDASI 532

Query: 870 EVVRMSSGFTEGGSVTPNCA---YIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDL 924
            +    +G  +   +T N A   ++  R++  R P  GDKFASR GQKG   + +  ED+
Sbjct: 533 ALKSTENGIIDQVLLTTNAAGNKFVKVRVRNSRIPQTGDKFASRHGQKGTVGITYRQEDM 592

Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           PF+  GL PDI+ NPH  PSRMTIG L
Sbjct: 593 PFSAEGLTPDIIINPHAIPSRMTIGHL 619



 Score = 47.8 bits (112), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 25/37 (67%)

Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           GY   G E MY+G  G  MQAQ++ G  +YQRL+HMV
Sbjct: 656 GYQSRGLEVMYNGHTGRKMQAQVYLGPTYYQRLKHMV 692


>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
 gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
          Length = 1171

 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 183/689 (26%), Positives = 299/689 (43%), Gaps = 114/689 (16%)

Query: 323 MLTNCILPH--LDDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH  + D+ +  K   L +M  +L     G  +LD  D +  + +   G    
Sbjct: 344 ILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLA 403

Query: 375 ----SLYLQLLKKEK-SGTSAVLKESD--IYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
               +L+  LLK+ + +    + K  D  +    +   I   +   LATGN    K +  
Sbjct: 404 FLFRALFRNLLKEVRLTAQKYINKNGDFMLDLCVKTPLITRGLAYSLATGNWGDQKKAH- 462

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              Q+   V  ++ +NR+ Y   +SH R  +     +E + ++PRQL    WG +CP  T
Sbjct: 463 ---QSRAGV--SQVLNRLTYTATLSHLRRCN-SPIGREGKLAKPRQLHNTQWGMVCPAET 516

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS   +P  +L      L    M  L  V  +    A  + ++
Sbjct: 517 PEGQAVGLVKNLALMAYISVGSLPEPIL----EFLEEWSMENLEEVAPTAIADATKIFVN 572

Query: 544 GRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           G  VG   D  Q+ T+L    R + I+  ++    +I    R  +       + ++T  G
Sbjct: 573 GAWVGIHRDPEQLMTTLKKLRREMDIIVSEVSMVRDI----RDRE-------IRIYTDAG 621

Query: 602 RMLRPVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKE- 634
           R+ RP++                           +A G +E I   E+  + + +  ++ 
Sbjct: 622 RVCRPLLIVENQKLALKRKHIDQLKDNSYTWSELVAGGVVELIDAMEEETVMLAMMPEDL 681

Query: 635 ---AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
               Y    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+  + 
Sbjct: 682 KAGGYCDTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRM 741

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
               + L  P  P       + L  +  P G NAIVA++SYTGY+ ED++I+N+S  +RG
Sbjct: 742 DTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRG 801

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
                +F+S+F       +Y   E      +  +++                  DK    
Sbjct: 802 -----LFRSVFYR-----SYRDQEANLDNANEELIEKP--------------TRDKCSGM 837

Query: 812 DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPM----YSYWKESENRYVTCRYSGKEEM 867
            +        +L DKL  DG++  G +++  D +     S     ++   T +   K++ 
Sbjct: 838 RH--------SLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDATIKRYTKKDA 889

Query: 868 CVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAE 922
              +    +G  +   +T N     ++  R++  R P +GDKFASR GQKG   + +  E
Sbjct: 890 STFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQE 949

Query: 923 DLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           D+PFT+ G+ PDI+ NPH  PSRMTIG L
Sbjct: 950 DMPFTNEGITPDIIINPHAVPSRMTIGHL 978



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNI---VKAAISEPKV-PAGPVGIHFN 127
            + SFD  +   +   VED  P+E +   +    ++   +K A+   ++  + P   H+ 
Sbjct: 45  QLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVENPIKFALKFDQIYLSKPT--HWE 102

Query: 128 K------YYPTEARQTRSVYSGPF--NVTVAWSWDGKAGGTFTKE---VGRVPIMLKSKR 176
           K        P EAR     YS P   ++T   +  G+       E   VG++PIML+S  
Sbjct: 103 KDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRIGEEPKETKYEKVFVGKIPIMLRSSY 162

Query: 177 CHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           C L N++   L E  E P + GGYF++ G EK++
Sbjct: 163 CMLANMSDRDLSELNECPLDPGGYFVINGSEKVL 196



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  +  Q+F G  +YQRL+HMV DK  ++
Sbjct: 1014 EYGYHLRGNEIMYNGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHSR 1059


>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
           vinifera]
 gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
 gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
          Length = 1193

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 174/642 (27%), Positives = 277/642 (43%), Gaps = 124/642 (19%)

Query: 374 GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
           G L+  L +K      A +       K+ ++  A +A +I S +   LATGN        
Sbjct: 407 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG------ 460

Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
            Q   A     +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG +CP  
Sbjct: 461 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAE 518

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           TP+G  CGL+ +L     I+    +  + +      +     ++P +  IP Q+  + ++
Sbjct: 519 TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAV--IP-QSTKIFVN 575

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG  + +    LV  LR L+    ++  + E+  ++           L L+T  GR 
Sbjct: 576 GCWVG--IHRNPDLLVKTLRQLR---RQVDVNTEVGVIRDIR-----LKELRLYTDYGRC 625

Query: 604 LRPVMNL------------------------------AAGNIEWIGTFEQVFMDICITM- 632
            RP+  +                              + G IE++ T E+    I +T+ 
Sbjct: 626 SRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIN 685

Query: 633 ---------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
                    +EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  
Sbjct: 686 DLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 745

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
             N++ +     Y L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+
Sbjct: 746 VTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 805

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           N+SS +RGF     F+S+F      +  Y  E    G                       
Sbjct: 806 NQSSIDRGF-----FRSLF------FRSYRDEEKKMGT---------------------- 832

Query: 804 VSDKWQTKDYFGRDPANKALE------DKLGPDGLVYVGAKLNERDPMYSYW---KESEN 854
                  K+ FGR      +       DKL  DGL   G +++  D +        + ++
Sbjct: 833 -----LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDS 887

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRA 909
           +    RY+ + +    +    SG  +   +T N     ++  R++  R P +GDKF+SR 
Sbjct: 888 QGQASRYT-RRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 946

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG   + +  ED+P+T  G+ PDI+ NPH  PSRMTIG L
Sbjct: 947 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 988



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V      K       T T+E     +G+VPIML+S  C + 
Sbjct: 112 FPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVY 171

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 172 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 217



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1025 GYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1074


>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 174/642 (27%), Positives = 277/642 (43%), Gaps = 124/642 (19%)

Query: 374 GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
           G L+  L +K      A +       K+ ++  A +A +I S +   LATGN        
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG------ 354

Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
            Q   A     +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG +CP  
Sbjct: 355 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAE 412

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           TP+G  CGL+ +L     I+    +  + +      +     ++P +  IP Q+  + ++
Sbjct: 413 TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAV--IP-QSTKIFVN 469

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG  + +    LV  LR L+    ++  + E+  ++           L L+T  GR 
Sbjct: 470 GCWVG--IHRNPDLLVKTLRQLR---RQVDVNTEVGVIRDIR-----LKELRLYTDYGRC 519

Query: 604 LRPVMNL------------------------------AAGNIEWIGTFEQVFMDICITM- 632
            RP+  +                              + G IE++ T E+    I +T+ 
Sbjct: 520 SRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIN 579

Query: 633 ---------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
                    +EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  
Sbjct: 580 DLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 639

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
             N++ +     Y L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+
Sbjct: 640 VTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 699

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           N+SS +RGF     F+S+F      +  Y  E    G                       
Sbjct: 700 NQSSIDRGF-----FRSLF------FRSYRDEEKKMGT---------------------- 726

Query: 804 VSDKWQTKDYFGRDPANKALE------DKLGPDGLVYVGAKLNERDPMYSYW---KESEN 854
                  K+ FGR      +       DKL  DGL   G +++  D +        + ++
Sbjct: 727 -----LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDS 781

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRA 909
           +    RY+ + +    +    SG  +   +T N     ++  R++  R P +GDKF+SR 
Sbjct: 782 QGQASRYT-RRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG   + +  ED+P+T  G+ PDI+ NPH  PSRMTIG L
Sbjct: 841 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 882



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V      K       T T+E     +G+VPIML+S  C + 
Sbjct: 6   FPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVY 65

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 66  QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 111


>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 168/610 (27%), Positives = 261/610 (42%), Gaps = 105/610 (17%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           KE ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 432 KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 484

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 485 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 540

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               I   L   G      +  S+  QA  + ++G  VG   D     ++ K        
Sbjct: 541 AAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRD---PDMLVKTLRRLRRR 597

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
             +   + +V   R ++       L ++T  GR  RP+  +                   
Sbjct: 598 VDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRE 650

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      A G IE+I T E+    I +T+          +EAY    TH E+  + 
Sbjct: 651 SAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSL 710

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 711 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 770

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NA VA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 771 AMEHLHFRQLPAGINANVAISCYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 819

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
             Y  E    G                      +V + +   D            DKL  
Sbjct: 820 RSYRDEEKKMGT---------------------LVKEDFGRPDRGSTMGMRHGSYDKLDD 858

Query: 830 DGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
           DGL   G +++  D +        + E +  + RY+ + +  + +    +G  +   +T 
Sbjct: 859 DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYT-RRDHSISLRHSETGMVDQVLLTT 917

Query: 887 NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
           N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI+ NPH 
Sbjct: 918 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHA 977

Query: 942 FPSRMTIGFL 951
            PSRMTIG L
Sbjct: 978 IPSRMTIGQL 987



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V         DG+       FTK  +G+VPIML+S  C L 
Sbjct: 111 FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLF 170

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 171 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 216



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G E MY+G  G  + A IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1024 GYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1073


>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
           brevicollis]
          Length = 904

 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 188/708 (26%), Positives = 295/708 (41%), Gaps = 127/708 (17%)

Query: 316 EVEICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
            V     +L   +LPH+         K   L +M  +         +LD  D    + + 
Sbjct: 148 RVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYMVHRTLQAALRRRELDDRDHYGNKRLD 207

Query: 372 TGGSL--------YLQLLKKEKSGTSAVLKESDIYAAFRASSIE---SAMTNFLATGNVS 420
             GSL        + QL KK     + ++  +  +       +E   S +   LATGN  
Sbjct: 208 LAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRNHKFMVITLLDVEILGSGLRYSLATGNWG 267

Query: 421 AGKNSTLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWG 477
             K +     +A   V  ++ +NR+ +   +SH R ++     +  + ++PRQL    WG
Sbjct: 268 DQKKA----HEARAGV--SQVLNRLTFASTLSHLRRLN-SPIDRTGKIAKPRQLHNTHWG 320

Query: 478 FICPVHTPDGTPCGLLNHLTTNCQI---SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIP 534
           +ICP  TP+G   GL+ +L+    +   S+  P   L    S L  L  LP    I++  
Sbjct: 321 YICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLG-ASGLDYLDRLPSRSAIKT-- 377

Query: 535 EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGL 594
             A  V ++G  VG  +      LV  +R ++     +   + I    R  +       +
Sbjct: 378 --ATKVFVNGNWVG--IHSHPDELVTTMRQMR-RAHSVASEVSIFRNIRERE-------V 425

Query: 595 YLFTGPGRMLRP--------------------VMNLAAGNIEWIGTFEQVFMDICITMKE 634
           ++ T  GR  RP                    VM L    + W    ++  ++     +E
Sbjct: 426 HIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRNDQMSWTHLVQRGVVEYIDVNEE 485

Query: 635 ------------------------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
                                   +Y    TH E+  +  LS  A++IP PD NQSPRN 
Sbjct: 486 ETTMIAMYGHDPLALLALPDSNTTSYCNTYTHCEIHPSMILSICASIIPFPDHNQSPRNT 545

Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
           YQ  MGKQ MG    N+  +     + L  P  P  +    + L     P G NAIV ++
Sbjct: 546 YQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQTRSMNYLRFAELPAGINAIVGIM 605

Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
           +YTGY+ ED++I+N+ S ERG     +F+S+F       +Y  +E               
Sbjct: 606 TYTGYNQEDSVIMNRYSVERG-----LFRSVFYR-----SYAASE--------------- 640

Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK 850
                H +R   +  DK   ++  G   AN    DKL  DG+V  G +++  D +     
Sbjct: 641 -----HSERGEIIKIDKPSRENCIGMRRANY---DKLEDDGIVAPGIRVSGDDAIVGRLL 692

Query: 851 E--SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGD 903
           E     R  +     K +  + +    SG  +G  ++ N     ++  R++  R P +GD
Sbjct: 693 ELPEATRQASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGD 752

Query: 904 KFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           KFASR GQKG C +++  ED+PF  SG+VPDI+ NPH  PSRMTIG L
Sbjct: 753 KFASRHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHL 800



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 764 ELESGYNY--YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
           ++  GYN+  YG E MY+G  G  MQAQ+F G  +YQRL+HMV DK   +
Sbjct: 831 DILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKHMVDDKIHAR 880


>gi|357289763|gb|AET73076.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 12T]
 gi|357292563|gb|AET73899.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 14T]
          Length = 1202

 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 179/704 (25%), Positives = 295/704 (41%), Gaps = 134/704 (19%)

Query: 323  MLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------ 376
            ++ N I PH      K   L +MT KL     G ++    DS + + +   GSL      
Sbjct: 366  VINNDIFPHCRTTAQKVYMLGYMTNKLLQTSFGWMEPTDRDSYLNKRVDLTGSLINNLFR 425

Query: 377  -YL---------QLLKKEKSGT-------SAVLKESDIYAAFRASSIESAMTNFLATGNV 419
             YL         Q++++  SG+         ++  ++IY   ++ +IE+ +   LATG+ 
Sbjct: 426  NYLNKLVKDMQKQVVREINSGSWKSNEDYENIINSTNIYKIIKSVTIENGIKRALATGDF 485

Query: 420  SAGKNSTLQLMQASGFVIMAENINRMRYMS---HFRAVHRGSYFQEMRSSEPRQLRTDAW 476
               + +       S  V +A+ +NR+ Y+S   H R V+     +  +   PR+L   +W
Sbjct: 486  GIKQIN-------SNKVGVAQVLNRLTYISSISHLRRVN-TPIDKSGKLVPPRRLHNSSW 537

Query: 477  GFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQ 536
            GF+CP  TP+G   G++ +L+    ++  IP+       + ++   ++P+   I+++ + 
Sbjct: 538  GFLCPAETPEGASVGIVKNLSYMTHVT--IPTN------TTILYDYIMPMVTDIETLGDN 589

Query: 537  A------LMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL 590
            A      + V ++G  VG   +         L + K + EK  K +  +Y         L
Sbjct: 590  AKSLHDKVKVFINGVWVGITEE--------PLELFKNIKEKKYKGIINIYTSVIFDCKLL 641

Query: 591  YPGLYLFTGPGRMLRPVMNLA---------------AGNIEW----------------IG 619
               + +    GR+ RPV+ +                AG + W                I 
Sbjct: 642  --EIKVCNDAGRLTRPVLKVENNAVLYTKELFHKVRAGELNWNDLLYSGKIPQSAIEYID 699

Query: 620  TFEQ----VFM--DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
            + EQ    + M  D        Y    +H E+  +     +A+ IP P+ NQSPRN YQ 
Sbjct: 700  SNEQNNTMIAMEPDQLTATDSKYVYHYSHCEIHPSTIFGVVASCIPFPENNQSPRNTYQS 759

Query: 674  QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
             MGKQ +G    N+  +     Y L  P  P       D + ++  P G   IVA++S++
Sbjct: 760  AMGKQALGMYVTNYDNRMDKTAYVLSYPMRPLVDTRLMDIIKLNTIPSGEQVIVAIMSHS 819

Query: 734  GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFG 793
            GY+ ED+++ NK S +RG     I+ +   E +     YG E M    D +  +   F  
Sbjct: 820  GYNQEDSVLFNKGSIDRGLFLATIYHT---EKDEDKKLYGNEEMRCKPDKTKTKNMKF-- 874

Query: 794  VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY---WK 850
                                        A  DK+   GLV     + +RD + +     K
Sbjct: 875  ----------------------------ANYDKINSQGLVPENTLVEDRDIIIAKVLPIK 906

Query: 851  ESENRYV-TCRYSGKEEM--CVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFAS 907
            E++N Y  T +Y+ +  +    E   +   ++E      N   +  R  R P +GDKF+S
Sbjct: 907  ENKNDYTKTIKYTDESHVHRTGEETFIDKNYSESNGDGYNFCKVRLRSVRRPVIGDKFSS 966

Query: 908  RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R GQKG        +D+PFT  GL PDI+ NPH  PSRMTI  L
Sbjct: 967  RHGQKGTIGNIIEEKDMPFTADGLKPDIIINPHAIPSRMTIAQL 1010



 Score = 48.9 bits (115), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 27/171 (15%)

Query: 61  QNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPI----------EFEIYGKTLKLNIVKA 110
           +N+ L  L    I S++++++  L+  +    PI          E+ ++     + +   
Sbjct: 45  KNQHLKQLIRHQIESYNYLVNTQLEQTIAMFNPIRICSEHDWEKEYNLHRLVAHVTLENF 104

Query: 111 AISEPKV--PAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK----- 163
            I  P+V    G   I F    P EAR     Y+G   V +   +  + G  +       
Sbjct: 105 NIHRPQVYENNGATKIMF----PQEARLRNFTYAGAMTVDLNIKYTVRNGENYKNTQTYN 160

Query: 164 ------EVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
                  +G++PIML+S  C L         + GE   + GGYFI+ G EK
Sbjct: 161 KVLKNIHIGKLPIMLRSDICVLSQYKHLNTDQTGECKMDPGGYFIINGSEK 211



 Score = 47.8 bits (112), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 12/86 (13%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY-----FGRDPANKA 822
            GY   G E MY+ + G  M + IF G   YQRL+HMV+DK  ++         R PA   
Sbjct: 1047 GYESNGNEVMYNALTGEQMPSSIFIGPAFYQRLKHMVNDKQHSRSIGPMVNLTRQPA--- 1103

Query: 823  LEDKLGPDGLVYVGAKLNERDPMYSY 848
              +    DG +  G    ERD M S+
Sbjct: 1104 --EGRARDGGLRFGEM--ERDCMISH 1125


>gi|109289351|gb|ABG29164.1| RNA polymerase II second largest subunit, partial [Entyloma
           arnoseridis]
          Length = 695

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 179/635 (28%), Positives = 277/635 (43%), Gaps = 130/635 (20%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
           KE  I  A ++++I + +   LATGN    K    + MQA   V  ++ +NR  + S   
Sbjct: 42  KEFFINTAVKSATITNGLKYSLATGNWGDQK----KFMQAKAGV--SQVLNRYTFASTLS 95

Query: 453 AVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            + R +    ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+    IS    S+ 
Sbjct: 96  HLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSLISVGSQSQP 155

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
           + +    L   G+  LT + +    ++  V ++G  +G    Q  T LV  LR L+   +
Sbjct: 156 IIEF---LEEFGLDQLTDMRRE-DARSTKVFVNGVWLG--THQDPTGLVSTLRGLR-RKD 208

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV----------------MN----- 609
            I   + +V+  R ++       L L+T  GR++RP+                MN     
Sbjct: 209 DISTEVSVVHDIREKE-------LRLYTDAGRVMRPLFIVNKDDRSLFIKRKHMNWLQHG 261

Query: 610 ------------LAAGNIEWIGTFEQVFMDICITMKE----------------------- 634
                       +  G IE++   E+  + I +++++                       
Sbjct: 262 TEDGSDFGWEDLVQCGVIEYLDAEEEETVMISMSIEDLNYSRAYHQNTNSVRDTLSDPSA 321

Query: 635 ------AYPGIT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  Y G T TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 322 RLVSLHTYSGDTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNY 381

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
           + +       L  P  P         L     P G NAIVA++ Y+GY+ ED++I+N+SS
Sbjct: 382 QMRMDTMANILYYPQKPLGTTRAMQHLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 441

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ--RLRHMVS 805
            +RG     +F+S+         YY T T      G M++ ++F         RL+H   
Sbjct: 442 IDRG-----LFRSL---------YYRTYTDLEKKSG-MVEMEVFEKPSRETTIRLKH--- 483

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRY 861
                              DKL  DGL   G +++  D +         +SE   +  + 
Sbjct: 484 ----------------GTYDKLDADGLCAPGTRVSGEDIIIGKTVPLPCDSEELGLRSKL 527

Query: 862 SGKEEMCVEVVRMSSGFTEGGSVTPN---CAYIGYRIQ--RNPTVGDKFASRAGQKGICS 916
             K +  + +    SG  +   VT N     ++  R++  R P  GDKFASR GQKG   
Sbjct: 528 HTKRDASMPLKSTESGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIG 587

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           + +  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 588 ITYRQEDMPFTVEGVTPDIIINPHAIPSRMTIGHL 622



 Score = 46.2 bits (108), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 758 FKSMFIELES------GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           F S+ +E  S      GY   G E MY+G  G  +QAQ++ G  +YQRL+HMV
Sbjct: 643 FTSLTVEAVSNVLKGFGYQSRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 695


>gi|110169452|gb|ABG53982.1| RNA polymerase II second largest subunit, partial [Entyloma
           calendulae]
          Length = 693

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 179/635 (28%), Positives = 277/635 (43%), Gaps = 130/635 (20%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR 452
           KE  I  A ++++I + +   LATGN    K    + MQA   V  ++ +NR  + S   
Sbjct: 40  KEFFINTAVKSATITNGLKYSLATGNWGDQK----KFMQAKAGV--SQVLNRYTFASTLS 93

Query: 453 AVHRGS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
            + R +    ++ + ++PRQL    WG +CP  TP+G  CGL+ +L+    IS    S+ 
Sbjct: 94  HLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSLISVGSQSQP 153

Query: 511 LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE 570
           + +    L   G+  LT + +    ++  V ++G  +G    Q  T LV  LR L+   +
Sbjct: 154 IIEF---LEEFGLDQLTDMRRE-DARSTKVFVNGVWLG--THQDPTGLVSTLRGLR-RKD 206

Query: 571 KIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV----------------MN----- 609
            I   + +V+  R ++       L L+T  GR++RP+                MN     
Sbjct: 207 DISTEVSVVHDIREKE-------LRLYTDAGRVMRPLFIVNKDDRSLFIKRKHMNWLQHG 259

Query: 610 ------------LAAGNIEWIGTFEQVFMDICITMKE----------------------- 634
                       +  G IE++   E+  + I +++++                       
Sbjct: 260 TEDGSDFGWEDLVQCGVIEYLDAEEEETVMISMSIEDLNYSRAYHQNTNSVRDTLSDPSA 319

Query: 635 ------AYPGIT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
                  Y G T TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+
Sbjct: 320 RLVSLHTYSGDTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNY 379

Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
           + +       L  P  P         L     P G NAIVA++ Y+GY+ ED++I+N+SS
Sbjct: 380 QMRMDTMANILYYPQKPLGTTRAMQHLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSS 439

Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ--RLRHMVS 805
            +RG     +F+S+         YY T T      G M++ ++F         RL+H   
Sbjct: 440 IDRG-----LFRSL---------YYRTYTDLEKKSG-MVEMEVFEKPSRETTIRLKH--- 481

Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW----KESENRYVTCRY 861
                              DKL  DGL   G +++  D +         +SE   +  + 
Sbjct: 482 ----------------GTYDKLDADGLCAPGTRVSGEDIIIGKTVPLPGDSEELGLRSKL 525

Query: 862 SGKEEMCVEVVRMSSGFTEGGSVTPN---CAYIGYRIQ--RNPTVGDKFASRAGQKGICS 916
             K +  + +    SG  +   VT N     ++  R++  R P  GDKFASR GQKG   
Sbjct: 526 HTKRDASMPLKSTESGIVDQVLVTTNGDGVKFVKVRVRSTRVPQTGDKFASRHGQKGTIG 585

Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           + +  ED+PFT  G+ PDI+ NPH  PSRMTIG L
Sbjct: 586 ITYRQEDMPFTVEGVTPDIIINPHAIPSRMTIGHL 620



 Score = 46.2 bits (108), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 758 FKSMFIELES------GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
           F S+ +E  S      GY   G E MY+G  G  +QAQ++ G  +YQRL+HMV
Sbjct: 641 FTSLTVEAVSNVLKGFGYQSRGLEIMYNGHTGRKLQAQVYLGPTYYQRLKHMV 693


>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1189

 Score =  193 bits (490), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 180/637 (28%), Positives = 274/637 (43%), Gaps = 102/637 (16%)

Query: 355 GMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVL---KESDIYAAFRA-SSIESAM 410
           G  +LD   ++M       G+L+ +L K  K      +   +  D+  A ++ S I   +
Sbjct: 421 GKKRLDLAGALMASSF---GALFRKLAKDVKKLLQNQIDSGRSFDVAGAIKSCSQITQGL 477

Query: 411 TNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
              L TGN    K   +     +G   +   +    Y+SH R ++     +E + ++PRQ
Sbjct: 478 QYQLLTGNWGRDKEGNVV---RTGVSQVLNRLTFASYLSHLRRLNT-PLGREGKMAKPRQ 533

Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVI 530
           L    WG ICP  TP+G   GL+ +L   C IS      + + I   L+  GM  L  + 
Sbjct: 534 LHNTHWGMICPAETPEGQAVGLVKNLALMCYIS---VGSMTSTILDFLLEFGMDSLDEIS 590

Query: 531 QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGL 590
             + +  + + L+G  +G + +Q   +LV  L  L+  G  I     IV          L
Sbjct: 591 PVLIKDRVKIFLNGTWIG-VFNQ-PDALVNLLLELRRKG-NISSETSIVRDI-------L 640

Query: 591 YPGLYLFTGPGRMLRPV---------------MNLAAGNIEWIGTFEQVFMD-------- 627
              + +FT  GR +RP+               + +    + W G  E   ++        
Sbjct: 641 SNEIKIFTDSGRSMRPLYIVENNRLLITKRHALMIENNQLNWSGLLESGVVEYIDCEEEE 700

Query: 628 ICITM--------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
           IC+             Y    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ 
Sbjct: 701 ICMIAMFPDDLINNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQA 760

Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
           MG    N+  +     + L  P  P       + L     P G N+IVA++ YTGY+ ED
Sbjct: 761 MGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQED 820

Query: 740 AMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG--VDGSMMQAQIFFGVVHY 797
           ++I+N+SS +RG     +F+S+F         Y +E  Y G  V  S  +       ++ 
Sbjct: 821 SLIMNQSSIDRG-----LFRSVF------NRTYSSEEKYLGSTVIESFTKPTATSNFLNL 869

Query: 798 QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY- 856
           +R            DY            KL  DGL+  G++ +  +P  +Y  E   R  
Sbjct: 870 KR-----------GDY-----------SKLDNDGLIEPGSRSDPNNP--NYPAEMNLRMD 905

Query: 857 VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ--RNPTVGDKFASRAGQKGI 914
            +C     E   V+ V ++            C +   +++  R P +GDKFASR GQKG 
Sbjct: 906 CSCCLRPNENGVVDNVLLTVN-------NKGCKFTKVKVRSVRVPQIGDKFASRHGQKGT 958

Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
             + +  EDLPFT  G+VPDI+ NPH  PSRMTIG L
Sbjct: 959 IGMTFRMEDLPFTCEGIVPDIIMNPHAVPSRMTIGHL 995



 Score = 48.5 bits (114), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 769  YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            Y+ YG E  ++G  G++M ++IF G  +YQRL+HMV DK   +
Sbjct: 1033 YSKYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHAR 1075



 Score = 42.4 bits (98), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%)

Query: 93  PIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWS 152
           P E E      +L   + ++++P V     G+ F   +P EAR     Y+    + +   
Sbjct: 110 PEEEEENSVLYRLKFGQLSLNKPSVEEKD-GV-FKHIWPQEARLRNLTYASQVYIDIEQQ 167

Query: 153 WDGKAGGTFTKE---------VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIV 203
                 G   +          + R+P+MLKS  C  + LT   L + GE   + GGYF+V
Sbjct: 168 TFLNEEGNLVQTDSTVYPRVPLCRIPMMLKSAYCWTKGLTEHDLSDIGECVFDQGGYFVV 227

Query: 204 GGHEKLVRLLINNRR 218
            G E   R+LI   R
Sbjct: 228 NGGE---RVLIAQER 239


>gi|124805562|ref|XP_001350475.1| DNA-directed RNA polymerase III subunit, putative [Plasmodium
            falciparum 3D7]
 gi|23496598|gb|AAN36155.1|AE014845_10 DNA-directed RNA polymerase III subunit, putative [Plasmodium
            falciparum 3D7]
          Length = 1450

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 196/756 (25%), Positives = 329/756 (43%), Gaps = 151/756 (19%)

Query: 128  KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK---EVGRVPIMLKSKRCHLRNLTP 184
            K  P   RQ    YS P  V V +    K     TK   E+GR+P+ML+S  C L N + 
Sbjct: 313  KLTPQICRQRDLTYSAPIYVDVEYV---KGNSIITKNNVEIGRLPVMLRSDICVLNNKSE 369

Query: 185  AQLIERGEHPDEWGGYFIVGGHEKLVRL---LINNRRNHPIAIKRN-------------- 227
             +L++ GE P + GGYFIV G E+++ +   L  NR    + IK N              
Sbjct: 370  EELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICATITSTTAESKS 429

Query: 228  ----AWKNRGL------LFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF----SHRK 273
                 +KN  L         D+GV I            +L  +   S + +F    SH+ 
Sbjct: 430  RCAIVYKNNKLYLKHNSFIEDIGVCI------------ILRAMGYESDQEIFQMIGSHKN 477

Query: 274  SMCLLGMMQSLHE---EGIHTQHDSKVFFGQIFKEKL--------QYDLRHLNEVEICDY 322
             +   G++ SL+E   E I T  D+ ++ G+  + +L          + +  NE +I + 
Sbjct: 478  YVN--GILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDIIEE 535

Query: 323  ---MLTNCILPHLD-----DYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG 374
                L+  +L H+      D+ +K  C+  M  ++        ++D +D    + +   G
Sbjct: 536  GLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAG 595

Query: 375  SLYLQL-----------LKKEKSGTSAVLKESDIYAAFRASS------------------ 405
             L   L           LKK+   T +   +S+  +  R++                   
Sbjct: 596  QLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDI 655

Query: 406  IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMR 464
            I   M   ++TGN +  +      M+ SG   +++ ++R+ +++    + R  S F++ R
Sbjct: 656  ITRGMQTAISTGNWNIKRFK----MEKSG---VSQVLSRLSFIACIGMMTRLNSQFEKGR 708

Query: 465  S-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGM 523
              S PR L+   WG +CP  TP+G  CGL+ +L     ++    ++    +  +L +LG+
Sbjct: 709  KVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTN--DNENNENLIEILYTLGV 766

Query: 524  LPLTPVI--QSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYL 581
                 +   +   E    V+L+G ++G  + +     + ++R L+  G KI + + I   
Sbjct: 767  EDSDSLTGEEIYKEGVFFVILNGILLG--VHKRPQKFMQRIRYLRRYG-KIGQFVSIY-- 821

Query: 582  KRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGN--------------------------I 615
                    L+  +Y+ T  GR+ RP++ +  G                           I
Sbjct: 822  -----DNFLHNAIYISTDGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFDLLKSSVI 876

Query: 616  EWIGTFEQVFMDICITMKEAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
            EWI   EQ   ++ I + E+   + TTH E+     L  +A LIP P+ NQSPRN YQC 
Sbjct: 877  EWIDVNEQ--NNLLIALNESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCA 934

Query: 675  MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
            MGKQ +G    N   +    LY L  P  P  +    + ++ +  P G NAIVAV+S+ G
Sbjct: 935  MGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCG 994

Query: 735  YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
            YD+EDA+++NKSS +RGF      +   +EL+  +N
Sbjct: 995  YDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFN 1030



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 894  RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            R  R P +GDKF+SR GQKG+  +    ED+PFT+SG+ PD++ NPHGFPSRMT+G L
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKL 1262



 Score = 46.2 bits (108), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
            G+N    E +YSG+ G  ++  IF G ++YQ+L+HMV DK   +    R    +   +  
Sbjct: 1299 GFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGR 1358

Query: 828  GPDGLVYVGAKLNERDPMYSY 848
              +G + +G    ERD + +Y
Sbjct: 1359 SKEGGLRLGEM--ERDCLIAY 1377


>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
          Length = 951

 Score =  193 bits (490), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 174/642 (27%), Positives = 275/642 (42%), Gaps = 124/642 (19%)

Query: 374 GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
           G L+  L +K      A +       K+ ++  A +A +I S +   LATGN        
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG------ 354

Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
            Q   A     +++ +NR+ Y   +SH R ++     +E + ++PRQL    WG +CP  
Sbjct: 355 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLN-SPIGREGKLAKPRQLHNSHWGMMCPAE 412

Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           TP+G  CGL+ +L     I+    +  + +      +     ++P +  IP Q+  + ++
Sbjct: 413 TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAV--IP-QSTKIFVN 469

Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
           G  VG  + +    LV  LR L+    ++  + E+  ++           L L+T  GR 
Sbjct: 470 GCWVG--IHRNPDLLVKTLRQLR---RQVDVNTEVGVIRDIR-----LKELRLYTDYGRC 519

Query: 604 LRPVMNL------------------------------AAGNIEWIGTFEQVFMDICITM- 632
            RP+  +                              + G IE++ T E+    I +T+ 
Sbjct: 520 SRPLFIVEKQRLLIKKKDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTIN 579

Query: 633 ---------KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTP 683
                    +EAY    TH E+  +  L   A++IP PD NQSPRN YQ  MGKQ MG  
Sbjct: 580 DLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIY 639

Query: 684 CLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMIL 743
             N++ +     Y L  P  P       + L     P G NAIVA+  Y+GY+ ED++I+
Sbjct: 640 VTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIM 699

Query: 744 NKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHM 803
           N+SS +RGF     F+S+F      +  Y  E    G                       
Sbjct: 700 NQSSIDRGF-----FRSLF------FRSYRDEEKKMGT---------------------- 726

Query: 804 VSDKWQTKDYFGRDPANKALE------DKLGPDGLVYVGAKLNERDPMYSYW---KESEN 854
                  K+ FGR      +       DKL  DGL   G +++  D +        + ++
Sbjct: 727 -----LVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDS 781

Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRA 909
           +    RY+ + +    +    SG  +   +T N   + +     R  R P +GDKF+SR 
Sbjct: 782 QGQPSRYT-RRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 840

Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           GQKG   + +  ED+P+T  G+ PDI+ NPH  PSRMTIG L
Sbjct: 841 GQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQL 882



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGG----TFTKE-----VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V      K       T T+E     +G+VPIML+S  C + 
Sbjct: 6   FPKAARLRNLTYSAPLYVNVTKRIIRKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTVY 65

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
           + +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 66  HNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSDNHVYVFKK 111


>gi|115453445|ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group]
 gi|108708688|gb|ABF96483.1| DNA-directed RNA polymerase III 130 kDa polypeptide, putative,
           expressed [Oryza sativa Japonica Group]
 gi|113548794|dbj|BAF12237.1| Os03g0403100 [Oryza sativa Japonica Group]
          Length = 1155

 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 165/556 (29%), Positives = 246/556 (44%), Gaps = 89/556 (16%)

Query: 438 MAENINRMRYMSHFRAVHRGS-YFQEMR-SSEPRQLRTDAWGFICPVHTPDGTPCGL--- 492
           +++ ++R+ YM+    + R +  F++ R +S PR L+   WG +CP  TP+G  CGL   
Sbjct: 444 VSQVLSRLSYMASLGYMTRITPQFEKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKN 503

Query: 493 ---LNHLTTNCQISEYIPSKVLAQIPSVLVSLGM--LPLTPVIQSIPEQALMVMLDGRIV 547
              L H+TT+    E  P      + ++  SLG+  L L    +     + +VM +G I+
Sbjct: 504 LALLTHVTTD---QEEGP------LMNLCYSLGVEDLSLLSGEEIHASGSFLVMFNGLIL 554

Query: 548 G-YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
           G +   Q   + + KLR   I+GE +      +++   +        +++ +  GR+ RP
Sbjct: 555 GKHRQPQRFANAMRKLRRSGIIGEFVS-----IFVNEKQHC------IHIASDGGRVCRP 603

Query: 607 VMN--------------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
           ++                           L  G IE++   E+    I +   E    + 
Sbjct: 604 LIIADKGIPRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIALYEHEDQDDVQ 663

Query: 641 ----THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLY 696
               TH E+     L  +A LIP P  NQSPRN YQC MGKQ MG    N  ++    LY
Sbjct: 664 RSSITHIEIEPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRADSLLY 723

Query: 697 RLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGC 756
            L     P       + +  D    G NA VAV+SY+GYD+EDA+++NKSS +RGF    
Sbjct: 724 LLVYAQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 783

Query: 757 IFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR 816
             K   +  E     Y    +    D          G +  Q +R +  D +       R
Sbjct: 784 AMKKYTVTKEKYEGGYSDRIVKPQRDKD--------GALLKQNMRALDEDGFAAPGLIIR 835

Query: 817 DP---ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
           +     NK        D     GA L +RD     +K+S   Y   +    E   V+ V 
Sbjct: 836 NHDIYVNKQTPRNTKRDS----GAHLTDRD-----YKDSPAVY---KGVDGETTVVDRVM 883

Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
           + S   E   +   C     R  R P VGDKF+SR GQKG+C      ED PF++ G+ P
Sbjct: 884 LCSDTDE--KLIIKCI---IRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 938

Query: 934 DIVFNPHGFPSRMTIG 949
           D++ NPHGFPSRMTIG
Sbjct: 939 DLIMNPHGFPSRMTIG 954



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 30/209 (14%)

Query: 40  TLSAPSLKNLTDKNFGKPPDK---QNEFLLTLG--APHIASFDFMLDEGLDLAVEDIAPI 94
           +L +P+ ++L      KP DK      FL   G    HI SF++ + +G+   V+    I
Sbjct: 18  SLPSPTYRSLA-APVTKPVDKFALLPAFLKVRGLVKEHIDSFNYFITKGIRNIVKANNRI 76

Query: 95  EFEIYGKT-LKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGP----FNVTV 149
           E        L+ N V+       VP+  V     K  P   R T   YS P       TV
Sbjct: 77  EARNNPSIFLRYNSVRVG-----VPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTV 131

Query: 150 AWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
              ++ K    F   +G +PIML+S  C L     A+L   GE P + GGYFIV G EK+
Sbjct: 132 GKQYELKRKPNFI--IGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKV 189

Query: 210 VRLLINNRRNHPIAIKRNAWKNRGLLFSD 238
                       I I+    KNR ++ +D
Sbjct: 190 ------------ILIQEQLSKNRIIIDTD 206



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 765  LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
            ++ G++Y G + +YSG+ G   QA +F G ++YQ+L+HMV DK   +    R    +   
Sbjct: 995  VKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPT 1054

Query: 825  DKLGPDGLVYVGAKLNERDPMYSY 848
            +    DG + +G    ERD + +Y
Sbjct: 1055 EGRSRDGGLRLGEM--ERDCLIAY 1076


>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron
           macrophyllum]
          Length = 1191

 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 171/616 (27%), Positives = 260/616 (42%), Gaps = 117/616 (18%)

Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
           K+ ++  A +A +I S +   LATGN         Q   A     +++ +NR+ Y   +S
Sbjct: 431 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 483

Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
           H R ++     +E + ++PRQL    WG +CP  TP+G  CGL+ +L     I+      
Sbjct: 484 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 539

Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
               I   L   G      +  ++  QA  + ++G  VG   D        +    ++  
Sbjct: 540 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDV 599

Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
                 +  + LK           L ++T  GR  RP+  +                   
Sbjct: 600 NTEVGVVRDIRLKE----------LRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRE 649

Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
                      A G IE+I T E+    I +T+          +EAY    TH E+  + 
Sbjct: 650 TPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSL 709

Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
            L   A++IP PD NQSPRN YQ  MGKQ MG    N++++     Y L  P  P     
Sbjct: 710 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTR 769

Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
             + L     P G NAIVA+  Y+GY+ ED++I+N+SS +RGF     F+S+F      +
Sbjct: 770 AMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 818

Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANK-----AL 823
             Y  E    G                              K+ FGR D AN        
Sbjct: 819 RSYRDEEKKMGT---------------------------LVKEDFGRPDRANTMGMRHGS 851

Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
            DKL  DGL   G +++  D +        + E +    RY+ + +    +    +G  +
Sbjct: 852 YDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYT-RRDHSTSLRHSETGMVD 910

Query: 881 GGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
              +T N     ++  R++  R P +GDKF+SR GQKG   + +  ED+P+T  G+ PDI
Sbjct: 911 QVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDI 970

Query: 936 VFNPHGFPSRMTIGFL 951
           + NPH  PSRMTIG L
Sbjct: 971 IVNPHAIPSRMTIGQL 986



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
           +P  AR     YS P  V V         DG+       FTK  +G+VPIML+S  C L 
Sbjct: 110 FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 169

Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
             +   L E GE P + GGYFI+ G EK++        NH    K+
Sbjct: 170 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 215



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 768  GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
            GY   G ETMY+G  G  + + IF G  +YQRL+HMV DK  ++   GR P  
Sbjct: 1023 GYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1072


>gi|14587115|gb|AAK70486.1|AF387736_1 RNA polymerase I subunit 2 [Blepharisma japonicum]
          Length = 259

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 151/302 (50%), Gaps = 67/302 (22%)

Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF----RPVHYDTLDMDNF 719
           NQSPRN YQCQM KQTMGTP  N++++   KLYRL  P  P      R V  +  +   +
Sbjct: 3   NQSPRNTYQCQMAKQTMGTPLYNYQFRNDNKLYRLTMPQKPLVSSKCRQVRRNGFE--KY 60

Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
           P GTNA+VAVISYTGYDMEDAMI+NKS+YERGF HG ++K+                   
Sbjct: 61  PSGTNAVVAVISYTGYDMEDAMIVNKSAYERGFGHGIVYKT------------------- 101

Query: 780 GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-ALEDKLGPDGLVYVGAK 838
                               +R + + K +   +   + A K A E  L  DGL +VG  
Sbjct: 102 -------------------NIRDLNATKKENFSWIQSEAAKKEATEKGLDTDGLPFVGQN 142

Query: 839 -------------LNERDPMYSYWKESENR----YVTCRYSGKEEMCVEVVRMSSGFTEG 881
                        + E +   +   ES N+    Y T  Y   E+   + +++    T  
Sbjct: 143 GISQQPELYLLNIVTEPNESKNKASESNNKVTESYKTFSYKDMEKSTYDDIKIIGTDTRQ 202

Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
             V        YR QRNP +GDKF+SR GQKG+ SV WP ED+PFT+ GL PD++ NPH 
Sbjct: 203 FKVN-----FKYRFQRNPIIGDKFSSRHGQKGVLSVLWPQEDMPFTEEGLTPDVIINPHA 257

Query: 942 FP 943
            P
Sbjct: 258 IP 259


>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia
           malayi]
 gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
           [Brugia malayi]
          Length = 1185

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 184/690 (26%), Positives = 299/690 (43%), Gaps = 116/690 (16%)

Query: 323 MLTNCILPH--LDDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
           +L   +LPH  + D+ +  K   L +M  +L     G  +LD  D +  + +   G    
Sbjct: 358 ILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLA 417

Query: 375 ----SLYLQLLKKEK-SGTSAVLKESD--IYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
               +L+  LLK+ + +    + K  D  +    +   I   +   LATGN    K +  
Sbjct: 418 FLFRALFRNLLKEVRLTAQKYINKNGDFMLDLCVKTPLITRGLAYSLATGNWGDQKKAH- 476

Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
              Q+   V  ++ +NR+ Y   +SH R  +     +E + ++PRQL    WG +CP  T
Sbjct: 477 ---QSRAGV--SQVLNRLTYTATLSHLRRCN-SPIGREGKLAKPRQLHNTQWGMVCPAET 530

Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
           P+G   GL+ +L     IS   +P  +L      L    M  L  V  +    A  + ++
Sbjct: 531 PEGQAVGLVKNLALMAYISVGSLPEPIL----EFLEEWSMENLEEVAPTAIADATKIFVN 586

Query: 544 GRIVGYILD--QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
           G  VG   D  Q+ T+L    R + I+  ++    +I    R  +       + ++T  G
Sbjct: 587 GAWVGIHRDPEQLMTTLKKLRREMDIIVSEVSMVRDI----RDRE-------IRIYTDAG 635

Query: 602 RMLRPVMN--------------------------LAAGNIEWIGTFEQVFMDICITMKE- 634
           R+ RP++                           +A G +E I   E+  + + +  ++ 
Sbjct: 636 RVCRPLLIVENQKLALKRKHIDQLKDNSYTWSELVAGGVVELIDAMEEETVMLAMMPEDL 695

Query: 635 ---AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
               Y    TH E+     L   A++IP PD NQSPRN YQ  MGKQ MG    N+  + 
Sbjct: 696 KAGGYCDTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRM 755

Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
               + L  P  P       + L  +  P G NAIVA++SYTGY+ ED++I+N+S  +RG
Sbjct: 756 DTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRG 815

Query: 752 FAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
                +F+S+F       +Y   E      +  +++                  DK    
Sbjct: 816 -----LFRSVFYR-----SYRDQEANLDNANEELIEKP--------------TRDKCSGM 851

Query: 812 DYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEE 866
            +        +L DKL  DG++  G +++  D +          E +      RY+ K++
Sbjct: 852 RH--------SLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDAAIKRYT-KKD 902

Query: 867 MCVEVVRMSSGFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPA 921
               +    +G  +   +T N     ++  R++  R P +GDKFASR GQKG   + +  
Sbjct: 903 ASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQ 962

Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
           ED+PFT+ G+ PDI+ NPH  PSRMTIG L
Sbjct: 963 EDMPFTNEGITPDIIINPHAVPSRMTIGHL 992



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 17/154 (11%)

Query: 72  HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNI---VKAAISEPKV-PAGPVGIHFN 127
            + SFD  +   +   VED  P+E +   +    ++   +K A+   ++  + P   H+ 
Sbjct: 45  QLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVENPIKFALKFDQIYLSKPT--HWE 102

Query: 128 K------YYPTEARQTRSVYSGPF--NVTVAWSWDGKAGGTFTKE---VGRVPIMLKSKR 176
           K        P EAR     YS P   ++T   +  G+       E   VG++PIML+S  
Sbjct: 103 KDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRSGEEPKETKYEKVFVGKIPIMLRSSY 162

Query: 177 CHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
           C L N++   L E  E P + GGYF++ G EK++
Sbjct: 163 CMLANMSDRDLSELNECPLDPGGYFVINGSEKVL 196



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 766  ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            E GY+  G E MY+G  G  +  Q+F G  +YQRL+HMV DK  ++
Sbjct: 1028 EYGYHLRGNEIMYNGHTGRKLTIQVFLGPTYYQRLKHMVDDKIHSR 1073


>gi|167042832|gb|ABZ07549.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
            microorganism HF4000_ANIW137J11]
          Length = 1231

 Score =  192 bits (489), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 242/950 (25%), Positives = 381/950 (40%), Gaps = 218/950 (22%)

Query: 131  PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRN--------- 181
            P  AR     Y+ P  +  +   +     +  +E+G +P+M+KS  C+L           
Sbjct: 178  PMMARLRNLTYAAPVFLGFSVIEEEMEIESSEEEIGMMPVMVKSALCNLHRESKYLRSKP 237

Query: 182  -----LTP----------AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
                 L P          A L    E P++ GGYFIV G E+++  L +   N  + ++R
Sbjct: 238  EYEARLGPDESFSDEAYAAILQMEQEDPEDPGGYFIVNGTERVLVCLEDLAPNR-VMVER 296

Query: 227  NAWKNRGLLFSDLGVY---IRSVKRDESATNNVLHF---VTNGSARFMFSHRKSMCLLGM 280
             A   R   ++ +       R++   E   + +LH    V +G    +      M  LGM
Sbjct: 297  EARYQRQTEYAKVFSQREGFRALTMVEKKKDGILHVSIPVASGGVPLVVL----MMALGM 352

Query: 281  MQS------------------LHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLN------- 315
              +                   + EGIH   D +V+     +E L+Y  R          
Sbjct: 353  ESADDIMGAITSDEATRNLVLANIEGIH--RDEQVY---TTEEALEYLERRFAAGQSKEY 407

Query: 316  EVEICDYMLTNCILPHLDD----YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIM 371
              +  +Y++ N +LPHL       + K L L  M  ++  +  G  Q D +D    + + 
Sbjct: 408  RRKRINYIIDNTLLPHLSTSLEVRYKKALFLGRMAREVLELATGTRQPDDKDHYANKRLK 467

Query: 372  TGGSLYLQLLKKEKSGTSAVL--------------KESDIYAAFRASSIESAMTNFLATG 417
              G+L  +L +   +G  A+L              KE  +  A R   + + + + +ATG
Sbjct: 468  LAGNLMEELFR---AGLQALLNDMKYQMERSYSKRKEKRVKHAIRRDVLTNKIMHAMATG 524

Query: 418  NVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP----RQLRT 473
            N   G+    QL+         +    M  +SH R V        +  S+P    R L +
Sbjct: 525  NWIGGRAGVSQLL---------DRTCNMATLSHLRRV-----ISPLTRSQPHFQARDLHS 570

Query: 474  DAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI 533
              +G +CP  TP+G  CGL+ +L     +SE +P+    ++   L  L M PL    + +
Sbjct: 571  TQFGRLCPNETPEGQNCGLVKNLALMIDVSENLPA---GEVLETLRELDMQPL----EKL 623

Query: 534  PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG 593
             E    V  +G + G   +    +LV KLR L+    +  +    V ++  E        
Sbjct: 624  QEGWGKVYFNGDLAGCTAE--PRNLVEKLRGLR----RQARLSHTVNVRHDES----LND 673

Query: 594  LYLFTGPGRMLRPVM----------------NLAAGNIEW-----IGTFEQVFM----DI 628
            + + + PGR+ RP++                 L AG + W     +G  E +      D 
Sbjct: 674  VLVNSDPGRIRRPLLLVHRNNKLALRRKHLDRLEAGKLTWNDLIDLGLVEYIDAEEEEDC 733

Query: 629  CITMKE----------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
             I + E          AY    TH E+     L    + +P P+ N SPR      M KQ
Sbjct: 734  LIALGETDLKRNRKTHAY----THMEVDPMVILGVATSNVPFPEYNSSPRCTMGAGMSKQ 789

Query: 679  TMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDME 738
            ++G    N+R +   + + L     P  +        +   P G N +VAV+SY GY+ME
Sbjct: 790  SLGMGQSNYRLRPDTRGHLLHYTQKPMVQTEAMKHNTLLTRPAGQNMVVAVMSYHGYNME 849

Query: 739  DAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
            DA+I N+ S +RG       +S          Y+  E  Y G      Q   F  ++   
Sbjct: 850  DALIFNRGSIDRGLGRSTFMRS----------YFSEERRYPG-----GQEDRF--IIPDP 892

Query: 799  RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYV- 857
             +R   S++     YF        LED    DGL+Y   +L  R+ +    K S  R++ 
Sbjct: 893  EVRGARSEEA----YFN-------LED----DGLIYPEVELRGREVLIG--KTSPPRFLS 935

Query: 858  ----------------TCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTV 901
                            T R+   E+  V+ V +S   +E GS     A I  R QR P +
Sbjct: 936  EPTDFMTPQRVRESSLTVRHG--EKGTVDSVMLSE--SENGS---RIARIRVRDQRIPEL 988

Query: 902  GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
            GDKFASR GQKG+     P E +PFT SG+ PD++ NPH  PSRMTI  +
Sbjct: 989  GDKFASRHGQKGVIGHIVPPEGMPFTASGIFPDLIINPHAIPSRMTIAHV 1038



 Score = 47.8 bits (112), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 764  ELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
            EL S G+ + G E++Y G  G  + A IF GV++YQ+L HMVS K   +
Sbjct: 1070 ELASLGFKHSGRESLYDGQTGRRIDADIFIGVIYYQKLHHMVSGKLHAR 1118


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,489,000,047
Number of Sequences: 23463169
Number of extensions: 683867368
Number of successful extensions: 1330612
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 16219
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 1273786
Number of HSP's gapped (non-prelim): 50782
length of query: 951
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 799
effective length of database: 8,792,793,679
effective search space: 7025442149521
effective search space used: 7025442149521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 82 (36.2 bits)