BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8410
(951 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila
melanogaster GN=RpI135 PE=2 SV=2
Length = 1129
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/968 (44%), Positives = 582/968 (60%), Gaps = 107/968 (11%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
Q + P L N + F + P K + L LG PH+ SFD ML GLD + + + P +
Sbjct: 6 QQMKTIPVLTN-SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWL 64
Query: 97 EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
G+ + + + I++PKVP + + + YPT++RQ YSG +V + WS +G
Sbjct: 65 SPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGV 124
Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
++G VPIML+SK C+L TP ++++ GEH EWGG F++ G+EK+VR+LI
Sbjct: 125 QKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMT 184
Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM- 275
RRNHPI +KR++WK+RG FSDLG+ +++V+ DES+ +NV+H++ NG+A+FMFSH K +
Sbjct: 185 RRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLS 244
Query: 276 -----------------------------------CLLGMMQSLHEEGIHTQHDSKVFFG 300
C+ M++ + E ++T K F G
Sbjct: 245 YVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIG 304
Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
+F+ + + ++ D++L ++ HLD Y DKF + M KLF QG +++
Sbjct: 305 NLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVE 364
Query: 361 SEDSIMLQEIMTGGSLYLQ---------------LLKKEKSGTSAVLKESDIYAAFR-AS 404
+ DS M+QE++ G LY + L+K+ + A++ + + R A
Sbjct: 365 NVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAG 424
Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
+ A+ +FLATGN+++ + L LMQ SG VIMAENINRMRYMSHFRA+HRGSYF MR
Sbjct: 425 GVGRAIESFLATGNIAS--RTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMR 482
Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGML 524
++E RQL DAWGFICPVHTPDGTPCGLLNHLT C+IS K++ IP L+ +GM+
Sbjct: 483 TTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMM 542
Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
PL+ + + E+ +V LDG+ +G+I A +V +LR KI G +P+ +EI ++ P
Sbjct: 543 PLSNR-RYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFG-TLPQMMEIGFI--P 598
Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
K G +PGLY+ TGP RM+RPV NL +E+IGT EQ++M+I I KE YP TTH E
Sbjct: 599 FKKNGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLE 658
Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
L+KT F+SNLANLIPMPD NQSPRNMYQCQMGKQTMGTPCLNW Q KLYRLQTP +P
Sbjct: 659 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTP 718
Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
FRPVHYD + +D+F MGTNAIVAVISYTGYDMEDAMI+NK++YERGFA+G I+K+ F+
Sbjct: 719 LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLT 778
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
L+ + YF R P L
Sbjct: 779 LD------------------------------------------KKSSYFARHPHMPELI 796
Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
L DGL + G+KL+ P+Y Y+ Y + KE+ VE +R F +
Sbjct: 797 KHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSF----DL 852
Query: 885 TP-NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
+P I R+ R T+GDKFASRAGQKGICS K+PAEDLPFT+SGL+PDIVFNPHGFP
Sbjct: 853 SPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFP 912
Query: 944 SRMTIGFL 951
SRMTI +
Sbjct: 913 SRMTIAMM 920
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 37/44 (84%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
GYNYYGTE +YSGVDG M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 961 GYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens
GN=POLR1B PE=1 SV=2
Length = 1135
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/968 (41%), Positives = 551/968 (56%), Gaps = 100/968 (10%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL LAV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + I+ A IS P VP G + N YP E R RS Y G + W+ +G +
Sbjct: 68 FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+LRNL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK RG ++ GV + V+ + SA N LH++ NG+ F +RK +
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246
Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
L M++ + EEG TQ + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306
Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
F+ KL + NE + +++ CI HL +KF L MT KLF + +G D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365
Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
DS++ QE++T G L+L LK++ G TS + ++ F
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGID 425
Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
+ ATGN+ + + L L+Q SG ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483
Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
+ R+L ++WGF+CPVHTPDG PCGL+NHLT C++ ++++ + A IP++L +LG+
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540
Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
P+ + V+LDG +VG++ +A + LR K++ EK IP +E+V +
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPM 600
Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
K LYPGL+LFT P R++RPV NLA G E IGT EQ+FM++ I E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659
Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
EL LS +AN IP D NQSPRNMYQCQMGKQTMG P L ++ + KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719
Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
P RP YD DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779
Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
+L +E + G D S++ FG P + +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGIKPGDPRV 803
Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
KL DGL ++GAKL DP YSY + Y KE V+ +++ S T G
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
C I R+ RNPT+GDKFASR GQKGI S WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 944 SRMTIGFL 951
SRMTIG L
Sbjct: 922 SRMTIGML 929
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD
Sbjct: 969 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus
GN=Polr1b PE=2 SV=2
Length = 1135
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/968 (41%), Positives = 547/968 (56%), Gaps = 100/968 (10%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G PP++Q L L H+ SF++ EGL AV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPPEQQKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + L IV A IS P VP G + N YP E R +S Y G ++W+ +G
Sbjct: 68 FKDERISLTIVDAVISPPSVPKGTICKDLN-VYPAECRGRKSTYRGRLTADISWAVNGVP 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+L NL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK+RGL ++ GV +R V+ + SA N LH+V NG+ F +RK +
Sbjct: 187 RNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246
Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
L M++ + EEG H+Q + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGE 306
Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
F+ KL + N VE +++L CI HL DKF L MT KLF + +G D+
Sbjct: 307 CFRVKLSLPDWYPN-VEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDN 365
Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
DS++ QE+++ G L+L LK K + + ++ F +
Sbjct: 366 PDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTE 425
Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
+ LATGN+ + + L +Q SG ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRT 483
Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
+ R+L ++WGF+CPVHTPDG PCGLLNHLT C++ ++++ + A IP++L LG+
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYT---ASIPALLCGLGVT 540
Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
P+ V+LDG +VG++ +A + LR K++ EK IP +E+ +
Sbjct: 541 PVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPM 600
Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
K LYPGL+LFT P R++RPV NL G E IGT EQ+FM++ I E + GI+TH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNVAIFEDEVFGGISTHQ 659
Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
EL LS +AN IP D NQSPRNMYQCQMGKQTMG P L ++ + KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQS 719
Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
P RP YD DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779
Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
+L +E G D + FG P + +
Sbjct: 780 DL--------SEKFKQGEDNLV----------------------------FGVKPGDPRV 803
Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
KL DGL ++GAKL DP YSY + Y KE V+ +++ S + GS
Sbjct: 804 MQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCS--NDMGS 861
Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
C I RI RNPT+GDKFASR GQKGI S WPAED+PFT+SG++PDI+FNPHGFP
Sbjct: 862 GKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFP 921
Query: 944 SRMTIGFL 951
SRMTIG L
Sbjct: 922 SRMTIGML 929
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD
Sbjct: 969 AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGG 1028
Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
G + G ERD + ++ +R C MCVE + S E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLE 1082
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii
GN=POLR1B PE=2 SV=1
Length = 1136
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/968 (41%), Positives = 549/968 (56%), Gaps = 100/968 (10%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL LAV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + I+ A IS P VP G + + YP E R R Y G ++W+ +G +
Sbjct: 68 FKDERISFTILDAVISPPTVPKGTICKEVS-VYPAECRGRRCTYRGKLTADISWAVNGIS 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+L NL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK RG ++ GV + V+ + SA N LH++ NG+ F +RK +
Sbjct: 187 RNFPIAMVRPKWKTRGPGYTHYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246
Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
L M++ + EEG TQ + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGE 306
Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
F+ KL + NE + +++ CI HL +KF L MT KLF + +G D+
Sbjct: 307 CFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDN 365
Query: 362 EDSIMLQEIMTGGSLYLQLLKKEKSG---------------TSAVLKESDIYAAFRAS-S 405
DS++ QE++T G L+L LK++ G T+ + ++ F
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGID 425
Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
+ ATGN+ + + L L+Q SG ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483
Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI-SEYIPSKVLAQIPSVLVSLGML 524
+ R+L ++WGF+CPVHTPDG PCGL+NHLT C++ ++++ + A IP++L +LG+
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYT---ASIPALLCNLGVT 540
Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVYLKR 583
P+ + V+LDG +VG++ ++A + LR K++ EK IP E+V +
Sbjct: 541 PIDGAPHRSYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPM 600
Query: 584 PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHR 643
K LYPGL+LFT P R++RPV NL G E IGT EQ+FM++ I E + G+TTH+
Sbjct: 601 TGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQ 659
Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPAS 703
EL LS +AN IP D NQSPRNMYQCQMGKQTMG P L ++ + KLYRLQTP S
Sbjct: 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQS 719
Query: 704 PFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFI 763
P RP YD DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI
Sbjct: 720 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFI 779
Query: 764 ELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKAL 823
+L +E + G D S++ FG P + +
Sbjct: 780 DL--------SEKIKQG-DSSLV---------------------------FGMKPGDPRI 803
Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
KL DGL ++GAKL DP YSY + Y KE V+ +++ S T G
Sbjct: 804 LQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863
Query: 884 VTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
C I R+ RNPT+GDKFASR GQKGI S WPAED+PFT+SG+VPDI+FNPHGFP
Sbjct: 864 F--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP 921
Query: 944 SRMTIGFL 951
SRMTIG L
Sbjct: 922 SRMTIGML 929
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD
Sbjct: 969 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 630 bits (1626), Expect = e-179, Method: Compositional matrix adjust.
Identities = 373/973 (38%), Positives = 511/973 (52%), Gaps = 110/973 (11%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++ PP++Q L L H+ SF++ + EGL AV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYAVPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + L IV AAIS P VP G + N YP E R RS Y G ++W+ +G
Sbjct: 68 FKDERISLTIVDAAISPPAVPKGTICKELN-IYPAECRGRRSTYRGKLTADISWAVNGVP 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+L NL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK+RGL ++ GV I V+ + SA N LH+V NG+ F +RK +
Sbjct: 187 RNFPIAMIRPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246
Query: 278 L------------------------------------GMMQSLHEEGIHTQHDSKVFFGQ 301
L M++ + EEG HTQ + G+
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGE 306
Query: 302 IFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDS 361
F+ KL + N E +++ CI HL DKF L MT KLF + +G D+
Sbjct: 307 RFRVKLSLPDWYPN-AEAAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDN 365
Query: 362 EDSIMLQEIMTGGSLYLQLLK---------------KEKSGTSAVLKESDIYAAFR-ASS 405
DS++ QE++T G L+L LK K T+ + ++ F +
Sbjct: 366 PDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSMGTE 425
Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
+ LATGN+ + + L MQ SG ++A+ +N +RY+SHFR VHRG+ F +MR+
Sbjct: 426 LTRPFEYLLATGNLRS--KTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRT 483
Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ-ISEYIPSKVLAQIPSVLVSLGML 524
+ R+L ++WGF+CPVHTPDG PCGLLNHLT C+ +++++ + A IP++L LG+
Sbjct: 484 TTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYT---ASIPALLCGLGVT 540
Query: 525 PLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRP 584
P+ V+LDG +VG++ ++A + LR K++ E+ SL+
Sbjct: 541 PVDAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRCSSLDGGGPDSH 600
Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY------PG 638
++ P + AG + + C + PG
Sbjct: 601 DRKAKPVPRAVPLHHSLQAGEACAEPGAGQRRARWNYGAALHEHCHLRGRGFWWSFHTPG 660
Query: 639 ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
+ +AN IP D NQSPRNMYQCQMGKQTMG P L ++ + KLYRL
Sbjct: 661 ALPSQPAEV------IANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRL 714
Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
QTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++
Sbjct: 715 QTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVY 774
Query: 759 KSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
KS FI+L +E G D + FG P
Sbjct: 775 KSEFIDL--------SEKFKQGDDSLV----------------------------FGVKP 798
Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGF 878
+ + KL DGL ++GAKL DP Y Y + Y KE V+ +++ S
Sbjct: 799 GDPRVMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSND 858
Query: 879 TEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFN 938
T G C + R+ RNPT+GDKFASR GQKGI S WPAED+PFT+SG++PDI+FN
Sbjct: 859 TGSGKF--KCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFN 916
Query: 939 PHGFPSRMTIGFL 951
PHGFPSRMTIG L
Sbjct: 917 PHGFPSRMTIGML 929
Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD
Sbjct: 969 AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028
Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
G + G ERD + ++ +R C +CV+ + S E
Sbjct: 1029 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 627 bits (1617), Expect = e-178, Method: Compositional matrix adjust.
Identities = 377/986 (38%), Positives = 541/986 (54%), Gaps = 131/986 (13%)
Query: 51 DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEGL-DLAVEDIA-PIEFEI-------- 98
++ F PP F L PH+ SF+ + + GL + AV++I F+
Sbjct: 9 ERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGA 68
Query: 99 --YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
+G + + + I++P + + K YP EAR+ + Y + +WS +G
Sbjct: 69 LKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGG 128
Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
+ +EVG +PIM++S RCHL L+PA+LI E +E GGYFIV G EKL+R+LI
Sbjct: 129 PRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILP 188
Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK--- 273
+RNHP AI R ++ NRG +S G+ IR V+ D+S+ N LH++ NG F F RK
Sbjct: 189 KRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEY 248
Query: 274 ---SMCLLG------------------------------MMQSLHEEGIHTQHDSKVFFG 300
SM +L M+++ G+++Q ++ + G
Sbjct: 249 LIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLG 308
Query: 301 QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD 360
F+ L L +VE+ ++L +L HL + DKF L M KL+ +V G D
Sbjct: 309 SKFRVVLGV-AEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLLFMIRKLYALVAGECCAD 367
Query: 361 SEDSIMLQEIMTGGSLYLQLLKKE--------KSGTSAVLKESDIYAAFRA--------- 403
+ DS QEI+ GG LY Q+LK++ ++ + ++ S F
Sbjct: 368 NPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFS 427
Query: 404 ---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYF 460
+ I + + FL+TGN+ + N+ L L QA+G+ ++AE +N R++SHFR VHRG++F
Sbjct: 428 KINNDIGTKLQYFLSTGNLVS--NTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFF 485
Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVS 520
E++++ R+L +AWGF+CPVHTPDG+PCGLLNHL C+I + PS V +QIPS+L+S
Sbjct: 486 AELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTH-PSDV-SQIPSLLLS 543
Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV------------ 568
LG+ P P + V LDG+IVG+ ++A + LR++KI
Sbjct: 544 LGVDP--PSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATE 601
Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDI 628
K+P LEI Y+ P G YPGLYLF+ P RM+RPV +++ G ++ +G FEQV+MDI
Sbjct: 602 PAKVPLDLEIGYV--PPSHNGQYPGLYLFSNPARMVRPVKHISTGELDMLGPFEQVYMDI 659
Query: 629 CITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
KE P ++TH E S T+ LS +AN+ P D NQSPRNMYQCQMGKQTMGTP R
Sbjct: 660 ACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALR 719
Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
Y+ KLYRLQT +P RP ++T +D++P GTNA+VAVISYTGYDMEDAMILNKS++
Sbjct: 720 YRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAH 779
Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
ERGF +G ++K +L ++ G VVH+
Sbjct: 780 ERGFGYGTVYKGESFDL--------SQKRRRGEP-----------VVHH----------- 809
Query: 809 QTKDYFGRDPANKALED---KLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
FG P + + KL DGL ++G KL + DP+ +Y+ ES + Y G E
Sbjct: 810 -----FGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTE 864
Query: 866 EMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLP 925
V+ VR+ + G ++ RI R+P +GDKF+SR GQKGICS KWP D+P
Sbjct: 865 PGFVDEVRLLG--NDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMP 922
Query: 926 FTDSGLVPDIVFNPHGFPSRMTIGFL 951
FT+SG+ PDI+ NPH FPSRMTIG
Sbjct: 923 FTESGMQPDIIINPHAFPSRMTIGMF 948
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 39/47 (82%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
+++GYNY+G E MYSG+ G M+A I+ GVV+YQRLRHMVSDK+Q +
Sbjct: 986 VKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVR 1032
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust.
Identities = 374/990 (37%), Positives = 534/990 (53%), Gaps = 137/990 (13%)
Query: 51 DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEG-----LDLAVEDIA--------PIE 95
+ F PP ++ F L A PHI SF+ L EG L+L V+DI P+
Sbjct: 22 ESRFINPPKDKSAFPLLQEAVQPHIGSFN-ALTEGPDGGLLNLGVKDIGEKVIFDGKPLN 80
Query: 96 FE-------IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVT 148
E G L +++ + +I++P G K YP+E+RQ + Y G +
Sbjct: 81 SEDEISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLK 140
Query: 149 VAWSWDGKAGGTF-TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHE 207
+ WS + F ++ G +P+ML+S RCHL ++P +L++ E DE GGYFIV G E
Sbjct: 141 LKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIE 200
Query: 208 KLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF 267
KL+R+LI RRNHP+AI R ++ NRG +S G+ IRSV+ D+++ NVLH++ +G F
Sbjct: 201 KLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTF 260
Query: 268 MFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLR------- 312
FS RK+ L+ ++ L + HT D ++F G I ++L+ LR
Sbjct: 261 RFSWRKNEYLVPVVMIL-KALCHTS-DREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYP 318
Query: 313 HL------------------------NEVEICDYMLTNCILPHL--DDYWDKFLCLSHMT 346
HL +++E+ +L +L HL D DKF L M
Sbjct: 319 HLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMI 378
Query: 347 CKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE----------------KSGTSA 390
KL+ +V G D+ D+ QE++ GG LY +LK++ G +
Sbjct: 379 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAI 438
Query: 391 VLKESDIYAAFRA---SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY 447
K+ + +I S M FL+TGN+ + S L L Q SG+ ++AE IN R+
Sbjct: 439 NFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRF 496
Query: 448 MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
+SHFR VHRGS+F +++++ R+L ++WGF+CPVHTPDG+PCGLLNH C+IS
Sbjct: 497 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS--TQ 554
Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKI 567
+++IPS+L SLG+ P + + P V +DG+I+G++ + + LR K+
Sbjct: 555 QSDVSRIPSILYSLGVAPASHTFAAGPS-LCCVQIDGKIIGWVSHEQGKIIADTLRYWKV 613
Query: 568 VGEK--IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVF 625
G+ +P LEI Y+ P G YPGLYLF G RMLRPV L + +G FEQV+
Sbjct: 614 EGKTPGLPIDLEIGYV--PPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVY 671
Query: 626 MDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
M+I +T +E + TH E + T+ LS LANL P D NQSPRNMYQCQMGKQTMGTP +
Sbjct: 672 MNIAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGV 731
Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
++ KLYRLQT +P + YD MDNFP G NA+VAVISYTGYDM+DAMI+NK
Sbjct: 732 ALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINK 791
Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
S+ ERGF +G ++K+ ++L N T + G
Sbjct: 792 SADERGFGYGTMYKTEKVDLALNRNRGDPITQHFG------------------------- 826
Query: 806 DKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKE 865
FG D K +KL DGL Y+G + E DP+ +Y+ ++ N+ Y E
Sbjct: 827 --------FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSE 878
Query: 866 EMCVEVVRM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
+E V + S+ F E +V+ I YRI+R P +GDKF+SR GQKG+CS KWP
Sbjct: 879 PAYIEEVNLIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPT 933
Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
D+PF+++G+ PDI+ NPH FPSRMTIG
Sbjct: 934 IDMPFSETGIQPDIIINPHAFPSRMTIGMF 963
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
++GYNY+G E MYSG G ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1002 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 1047
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 601 bits (1550), Expect = e-171, Method: Compositional matrix adjust.
Identities = 357/971 (36%), Positives = 521/971 (53%), Gaps = 124/971 (12%)
Query: 62 NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGP 121
+E L +L PHI SFDF D G+DL ++D P+ FE K+ +S P
Sbjct: 2 SEELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVE 61
Query: 122 VGIHFNKYYPTEARQTRSVYSGPFNVTVAW----SWDGKAGGT------------FTKEV 165
I K YP E+R+T + Y+ PF + D GT F ++
Sbjct: 62 KEI---KLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDL 118
Query: 166 GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
GR+PIM+KS+ CHL ++P +LIE E E GGYFIV G+EK+VR+L+ + NHP+A+
Sbjct: 119 GRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALH 178
Query: 226 RNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK------SMCLLG 279
R AW NRG ++ G+ IR V+ D S+ N LH++ +G F +R+ + LL
Sbjct: 179 RKAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLK 238
Query: 280 MMQ---------------------------SLHEE---GIHTQHDSKVFFGQIFKEKLQY 309
++ SL E+ I+TQ + + G F+ + Q+
Sbjct: 239 ALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRARTQF 298
Query: 310 DLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQE 369
N ++I + + + HL +Y DK+ L M KL+ +V G D+ DS QE
Sbjct: 299 PPSFSN-IKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDSPAFQE 357
Query: 370 IMTGGSLYLQLLKKE-----KSGTSAVLKE--------SDIYAAFRAS-----SIESAMT 411
++ G +Y +LK++ +S S VLK + A + I +
Sbjct: 358 VLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVLDKNFKIADRFS 417
Query: 412 NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQL 471
FLATGN+ + +S + L Q SGF ++A+ +N +R++SHFR++HRG++F M+++ R+L
Sbjct: 418 YFLATGNLRS--SSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKTTAIRKL 475
Query: 472 RTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQ--IPSVLVSLGMLPL 526
++WGF CPVHTPDG PCGLLNHL++NC ++ P+ AQ +PS L + GMLP+
Sbjct: 476 MPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTLLPSFLAAHGMLPI 535
Query: 527 TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRP 584
++ Q L + LDGR++G I + +V LR L+ +G + IPK++EI Y
Sbjct: 536 D-MVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPSIPKTMEISYAPPT 594
Query: 585 EKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRE 644
G Y G+ LFT R +RPV+NL +G E IG EQ++M+I + E G+TTH E
Sbjct: 595 NVENGQYSGISLFTTGARFMRPVVNLTSGQNELIGPQEQLYMEIAVVPHEVIKGVTTHIE 654
Query: 645 LSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASP 704
S T S LANL P D NQSPRNMYQCQM KQTMGTP ++ ++ KLY++Q P
Sbjct: 655 TSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKP 714
Query: 705 FFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
+ +++P G NA++AVIS TGYDMEDAMI+NKS+YERGF HG ++K+ +I+
Sbjct: 715 IVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYID 774
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGR-DPANKAL 823
L+ G + + Q K +FGR + L
Sbjct: 775 LDQGLSRF-----------------------------------EQKKTFFGRPNTVVDEL 799
Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGS 883
+ + DGL +VG + +P Y+Y + S+ R VT Y GKEE +E VR+ G G +
Sbjct: 800 DKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFG-PNGAT 858
Query: 884 VTP---NCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
P N + R RNP +GDKF+SR GQKG+ S WP ++PFT+SG+ PD++ NP+
Sbjct: 859 RDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPN 918
Query: 941 GFPSRMTIGFL 951
FPSRMTIG L
Sbjct: 919 AFPSRMTIGML 929
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
++G+N +G E MYSG G + +IFFGV +YQRLRHMV DK+Q +
Sbjct: 968 KAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVR 1013
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPA2 PE=3 SV=2
Length = 1196
Score = 590 bits (1521), Expect = e-167, Method: Compositional matrix adjust.
Identities = 364/983 (37%), Positives = 529/983 (53%), Gaps = 129/983 (13%)
Query: 51 DKNFGKPPDKQNEFLLTLGA--PHIASFDFML-------------DEGLDLAVEDIAPIE 95
+ F PP ++ + L A PH+ SF+ + D G + + A E
Sbjct: 21 EARFVSPPKDKSAYPLLYEAVEPHVGSFNALTEGPGGGLLNLGARDIGAKVVFDGKASDE 80
Query: 96 FEIY-GKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSW- 153
Y G L L++ + ++++P G +P EAR+ + Y G + + WS
Sbjct: 81 NPNYLGNKLALSVTQVSLTKPMSNDGVTAAAERNVFPAEARKRLTTYRGKLLLKLNWSVN 140
Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
DG+ + ++ G +P+ML+S RCHL ++P +L+E E DE GGYFIV G EKL+R+L
Sbjct: 141 DGEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVNGIEKLIRML 200
Query: 214 INNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK 273
I RRNHP+AI R ++ NRG +S GV IR V+ D+++ NVLH++ +G F FS RK
Sbjct: 201 IVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQTSQTNVLHYLNDGQVTFRFSWRK 260
Query: 274 SMCLLGMMQSLHEEGIHTQHDSKVFFGQI--------FKEKLQYDLRH--------LNEV 317
+ L+ ++ L + + D ++F G + ++L+ LR LN
Sbjct: 261 NEYLVPVVLIL--KALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFKKRFPQLLNRR 318
Query: 318 EICDYM-----------------------LTNCILPHL-DDYWDKFLCLSHMTCKLFHVV 353
++ Y+ L +L HL D+ DK L M KL+ +V
Sbjct: 319 QVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDENTDKSNMLMFMIRKLYSLV 378
Query: 354 QGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESDIYAAFRAS------ 404
G D+ D+ QE++ GG LY ++K++ +K ++D+
Sbjct: 379 AGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADVNRGMPVDFKDRKY 438
Query: 405 ----------SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV 454
+I S + FL+TGN+ + S L L Q SG+ ++AE IN R++SHFR V
Sbjct: 439 MTRVLTRINENIGSKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMV 496
Query: 455 HRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI 514
HRGS+F +++++ R+L ++WGF+CPVHTPDG+PCGLLNH C+IS +++I
Sbjct: 497 HRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKIS--TTQSDVSKI 554
Query: 515 PSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG--EKI 572
P++L SLG+ P V + P V LDG+IVG+ + + LR K+ G + +
Sbjct: 555 PTLLYSLGVSPAAHVTAAGPSLCC-VQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGL 613
Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITM 632
P LEI Y+ P G YPGLYLF G RM+RPV L + +G FEQV+MDI +T
Sbjct: 614 PLDLEIGYV--PASKRGQYPGLYLFGGHSRMMRPVRYLPLDKQDIVGPFEQVYMDIAVTP 671
Query: 633 KEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGV 692
+E + TH E S T+ LS LANL P D NQSPRNMYQCQMGKQTMGTP + ++
Sbjct: 672 EEIQNNVHTHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSD 731
Query: 693 GKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGF 752
KLYRLQ+ +P + YD MDNFP GTNA+VAVISYTGYDM+DAMI+NKS+ ERGF
Sbjct: 732 NKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGF 791
Query: 753 AHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKD 812
++G ++K+ I+L ++ G + Q FG
Sbjct: 792 SYGTVYKTEKIDL----------SLSRGRGDPVTQ---HFG------------------- 819
Query: 813 YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVV 872
FG D K +KL DGL +G+ + E DP+ +Y+ ++ N+ Y E +E V
Sbjct: 820 -FGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEV 878
Query: 873 RM----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
+ S+ F E +T I YRI+R P +GDKF+SR GQKG+CS KWP D+PF++
Sbjct: 879 TLIGDESNKFQELQYIT-----IKYRIRRVPQIGDKFSSRHGQKGVCSRKWPTVDMPFSE 933
Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
+G+ PD++ NPH FPSRMTIG
Sbjct: 934 TGIQPDVIINPHAFPSRMTIGMF 956
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 38/47 (80%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
L++GYNY+G E MYSG G ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 994 LKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVR 1040
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 575 bits (1483), Expect = e-163, Method: Compositional matrix adjust.
Identities = 360/1000 (36%), Positives = 536/1000 (53%), Gaps = 143/1000 (14%)
Query: 51 DKNFGKPPDKQNEFLLTLGA--PHIASFDFML-DEG----LDLAVEDIAPIEF------- 96
+K F PP + + A PHI SF+ + D+G LD A+ +I F
Sbjct: 23 EKLFRDPPTDRTAYPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERA 82
Query: 97 EIYGKTLKLNIVKAAIS--EPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWD 154
+ GK KL I +I + +VP + +P E R+ Y G + T + +
Sbjct: 83 DPQGKN-KLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRIN 141
Query: 155 GKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLI 214
F +E+G++PIM+KS +CHL+N +PAQL+ R E +E GGYFIV G EKL+R+L+
Sbjct: 142 DGEPHEFVRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEKLIRMLL 201
Query: 215 NNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKS 274
NRRN P+AI R +++NRG ++ G+ +RSV+ DE++ NVLH++++G+ F FS RK+
Sbjct: 202 VNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKN 261
Query: 275 MCLLGMM----------------------------------------QSLHEEGIHTQHD 294
L+ +M ++ + G++++
Sbjct: 262 EYLIPVMMIMKALVETNDREIFEGLVGPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQ 321
Query: 295 SKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY-------WDKFLCLSHMTC 347
++ + GQ F+ L +++ E+ L +L HL DKF L M
Sbjct: 322 TRAYLGQKFRVVLGVP-DTMSDYEVGTEFLRKIVLVHLGSQDVTEQQDADKFNMLLFMCR 380
Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE---------KSGTSAVLK----- 393
KL+ +V G +D+ D++ QEI+ GG LY Q++K+ ++ L+
Sbjct: 381 KLYALVAGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTV 440
Query: 394 --ESDIY------AAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
+SD + A FR ++ I ++ FL+TGN+ + S L L Q SGF ++AE +N
Sbjct: 441 SFQSDTFLKDFPIAIFRRANENIGQSLEYFLSTGNLVS--PSGLDLQQVSGFTVVAEKLN 498
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
+R++SHFR VHRGS+F +++++ R+L ++WGF+CPVHTPDG+PCGLLNHL C+I
Sbjct: 499 FLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIM 558
Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
+E + + ++++ LG++ ++ S ++++VMLDGRIVG+ + S+ L
Sbjct: 559 TESVDASTISRLA---FELGVVNISSAATS---ESVVVMLDGRIVGWCTPEECKSIAETL 612
Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
R K+ GE +P LEI Y+ P G YPGLY+ + P RM+RPV L +++G
Sbjct: 613 RYWKVNGENGVPLQLEIGYV--PPSNGGSYPGLYMSSQPARMVRPVKYLPLQKEDFVGPQ 670
Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
EQ +M I T +E PG +TH E T+ LS LAN+ P D NQSPRNMYQCQMGKQTMG
Sbjct: 671 EQPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMG 730
Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
TP ++ K+YRLQT +P R ++T DNFP G NA+VAVISYTGYDM+DAM
Sbjct: 731 TPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAM 790
Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLR 801
ILNKS++ERGF HG I+K+ + L+ +++ FG +R
Sbjct: 791 ILNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVK-----------MFGFAPNSTIR 839
Query: 802 HMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE-------N 854
++ D L DGL VG L E D + ++ S N
Sbjct: 840 -------------------ESTRDMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVN 880
Query: 855 RYVTC---RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQ 911
R RY E+ VE VR+ + G+ I RI R+P +GDKF+SR GQ
Sbjct: 881 RDGVTHYERYKDSEDAFVEEVRVIGA--DNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQ 938
Query: 912 KGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
KG+ S KWPA D+PF+++G+ PD++ NPH FPSRMTIG
Sbjct: 939 KGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMF 978
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
+++GYNY+G E +YSG+ G QA I+ GVV+YQRLRHMV+DK+Q + P
Sbjct: 1016 MKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPI 1075
Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKE--SENRYVTCRYSGKEEMC 868
G + VG ERD + ++ ++R + C K MC
Sbjct: 1076 KGRKKGGGIRVGEM--ERDALLAHGTSFLLQDRLLNCSDYSKSWMC 1119
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes
octocarinatus GN=RPA2 PE=3 SV=2
Length = 1166
Score = 526 bits (1354), Expect = e-148, Method: Compositional matrix adjust.
Identities = 329/951 (34%), Positives = 495/951 (52%), Gaps = 104/951 (10%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTL-----KLNIVKAAISEPKVPAGPVGIHF 126
HI SFDF + L+ A E + P ++ + ++ KL + + + G +
Sbjct: 23 HIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLGEIDYDS 82
Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
+ YP+E RQ + Y+ P T+ +D + F ++G +P M + K C+L+ LT +
Sbjct: 83 HILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNLKGLTKKE 142
Query: 187 LIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSV 246
L +RGE E+GGYFIV G+EK++R+LI +RN PIA KR+ + RG F+D GV +R V
Sbjct: 143 LAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDYGVQMRCV 202
Query: 247 KRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMM-----------QSLHEE-------- 287
+ D +A L ++++GS ++K L+ ++ + ++E
Sbjct: 203 RDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYERIVKGNFNQ 262
Query: 288 -----------------GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILP 330
I+ SK G F+ L ++++ D L+ I
Sbjct: 263 RQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDIDAGDLFLSKHICI 322
Query: 331 HLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLL--------- 381
H D Y KF L M KL+ V V+LD+ DS+ +Q+++ GG LYLQ+L
Sbjct: 323 HTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQILSEKLFDCLH 382
Query: 382 --------KKEKSGTSAVLKESDIYAAFRASS----IESAMTNFLATGNVSAGKNSTLQL 429
K+ K +K D+ + + I M NFLATGN+ + N L L
Sbjct: 383 INLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGNLISRTN--LDL 440
Query: 430 MQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
MQ SGF I+ + +N +R++SHFR++HRG YF E +++ R+L ++WGFICPVHTPDG P
Sbjct: 441 MQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKLLPESWGFICPVHTPDGAP 500
Query: 490 CGLLNHLTTNC-QISEYIPSKVLAQIPSVLVSLGMLPLTP-VIQSIPEQALMVMLDGRIV 547
CGLLNH++ +C I + + ++L LGM ++ + + V+ DG +
Sbjct: 501 CGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHTGYYPVIFDGIHL 560
Query: 548 GYILDQIATSLVPKLRMLKIVGEK----IPKSLEIVYLKRPEKGMGL-YPGLYLFTGPGR 602
GY+ I S V LR LK + IP++LEI ++ L +PG++L + P R
Sbjct: 561 GYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAFIPFSGYSRNLQWPGIFLASTPAR 620
Query: 603 MLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPD 662
RPV NL IEWI EQ+ + I T ++ P TTH+EL + LS +A++ +
Sbjct: 621 FTRPVKNLHYNCIEWISPLEQMNLSIACTDEDITPE-TTHQELDPINILSIVASVGVFAE 679
Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
NQSPRNMYQCQM KQTMGTP N +++ K+YRL P P + D++ +P G
Sbjct: 680 YNQSPRNMYQCQMAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSG 739
Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVD 782
TNA+VAVISYTGYD+EDAMI+NKSSYERGF HG ++KS +L N T + S
Sbjct: 740 TNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNES-NSQSTRGIKSS-- 796
Query: 783 GSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER 842
V Y+ L ++ +D + LE+ + PDGL +G++L +
Sbjct: 797 ------------VRYKFLNNVSQ----------KDKSKIKLEN-IDPDGLPKIGSQLTKG 833
Query: 843 DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQ--RNPT 900
P + + ++ E+ +E VR+ P+ IGY I+ R P
Sbjct: 834 KPELCIFDTLKRGAKLSKFKDSEKARIETVRVCG----NDDKNPDNLSIGYTIRYSRIPV 889
Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
+GDKF+SR GQKG+ SV WP D+PFT++G+ PD++ NPH FPSRMT+G L
Sbjct: 890 IGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMGML 940
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 38/47 (80%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
L+ G+NY+G E MYSG+ G+ ++A IF GVV+YQRLRHMVSDK Q +
Sbjct: 978 LDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQAR 1024
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1
SV=2
Length = 1149
Score = 256 bits (655), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 259/977 (26%), Positives = 413/977 (42%), Gaps = 180/977 (18%)
Query: 72 HIASFDFMLDEGL-------DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGI 124
H+ SF++ +D L L + D+ P E Y K + + + K + S K P
Sbjct: 61 HLDSFNYFVDTDLKKIIKANQLILSDVDP---EFYLKYVDIRVGKKSSSSTKDYLTP--- 114
Query: 125 HFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTP 184
P E R YS P V + ++ E+GR+PIML+S +C L +
Sbjct: 115 ------PHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL--GVY 242
+++ + E P + GGYFIV G EK++ + +N I A + +G++ + + +
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIV---EADEKKGIVQASVTSSTH 225
Query: 243 IRSVKRDESATNNVLHFVTNGSARFM-----------FSHRKSMCLLGMMQSLHEE---- 287
R K N ++ N A + S + M L+ S +++
Sbjct: 226 ERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAV 285
Query: 288 --------GIHTQHDSKVFFGQIFKEKLQYDLRHLNE-VEICDYMLTNCILPHLD----D 334
I+TQ + + G K + L L E +E + ++ HL D
Sbjct: 286 NLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEGIE----AIATTVIAHLTVEALD 341
Query: 335 YWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKE----KS 386
+ +K L ++ MT ++ + +D D + + + G L + L KK K
Sbjct: 342 FREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKL 401
Query: 387 GTSAVLKESDIYAAFRA--------SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIM 438
VLK+ + + A ++I S + ++TGN S + M+ +G +
Sbjct: 402 SIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFK----MERAG---V 454
Query: 439 AENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
++R+ Y+S + R S F++ R S PR L+ +G +C TP+G CGL+ +L
Sbjct: 455 THVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNL 514
Query: 497 TTNCQIS---EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
I+ E P K L + LG+ +T + + V L+G ++G I +
Sbjct: 515 ALMTHITTDDEEEPIKKLCYV------LGVEDITLIDSASLHLNYGVYLNGTLIGSI--R 566
Query: 554 IATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
T V + R L+ G K E + + M ++ + T GR+ RP++ ++ G
Sbjct: 567 FPTKFVTQFRHLRRTG----KVSEFISIYSNSHQMAVH----IATDGGRICRPLIIVSDG 618
Query: 614 N--------------------------IEWIGTFEQVFMDICITMKEAYPGITTHRELSK 647
+E++ E+ I + K+ P +T H E+
Sbjct: 619 QSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMT-HLEIEP 677
Query: 648 TDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFR 707
L +A LIP P NQSPRN YQC MGKQ +G N + LY + P P +
Sbjct: 678 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVK 737
Query: 708 PVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
+ +D D P G NA VAV+SY+GYD+EDA++LNKSS +RGF + L+
Sbjct: 738 TKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKR 797
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
N+ T+ + G+ R+ WQ + L
Sbjct: 798 YANH--TQDIIGGM-----------------RVDENGDPIWQHQ--------------SL 824
Query: 828 GPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEVV 872
GPDGL VG K +N+ P S + N R Y G E ++ V
Sbjct: 825 GPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQV 884
Query: 873 RMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
MS + + + R R P +GDKF+SR GQKG+C + ED+PF D G+V
Sbjct: 885 MMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIV 939
Query: 933 PDIVFNPHGFPSRMTIG 949
PDI+ NPHGFPSRMT+G
Sbjct: 940 PDIIMNPHGFPSRMTVG 956
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
I ++ G+NY G + +YSG+ G +QA IFFG ++YQ+L+HMV DK + R +
Sbjct: 990 ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049
Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
+ DG + +G ERD + +Y G ++ +E + +SS E
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY--------------GASQLLLERLMISSDAFE-V 1092
Query: 883 SVTPNCAYIGY 893
V C +GY
Sbjct: 1093 DVCDKCGLMGY 1103
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 256 bits (653), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 242/903 (26%), Positives = 387/903 (42%), Gaps = 140/903 (15%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
E P + GGYFIV G EK+ I I+ KNR ++ +D +G + S
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206
Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
++ + N V+ F G + + + M G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266
Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
++ + I TQ + + G ++ ++++ ++E +L + IL H+ ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
+ C+ + + + + QG ++D D + + G L + L KK S
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386
Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
+ + D+ R I + M N ++TGN S + M G + +
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439
Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
++R+ Y+S + R S F++ R S PR L+ WG +CP TP+G CGL+ +L
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499
Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
I+ + + ++ L + L S P +V L+G I+G I D LV
Sbjct: 500 THITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556
Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
R+++ G E + S + +Y+ + GR+ RP +
Sbjct: 557 STFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605
Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
LA G +E++ E+ +I + + TTH E+
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664
Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
L A LIP P NQSPRN YQC MGKQ MGT N R + +Y L P P +
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724
Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
+ +D + P G NA VAV+SY+GYD+EDA++LNK+S +RGF ++K+ L+
Sbjct: 725 IELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781
Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
Y +T + V G M+ A + ++ L D G + +E+K
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825
Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
LV + P+ + +Y V Y G + +E V +SS + +
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882
Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
+ R R P +GDKF+SR GQKG+C + P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940
Query: 949 GFL 951
G L
Sbjct: 941 GKL 943
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 980 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 256 bits (653), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 242/903 (26%), Positives = 388/903 (42%), Gaps = 140/903 (15%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSD----LGVYIRSV 246
E P + GGYFIV G EK+ I I+ KNR ++ +D +G + S
Sbjct: 159 NECPLDPGGYFIVKGVEKV------------ILIQEQLSKNRIIVEADRKGAVGASVTSS 206
Query: 247 KRDESATNN---------------------VLHFVTNGS------ARFMFSHRKSMCLLG 279
++ + N V+ F G + + + M G
Sbjct: 207 THEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFG 266
Query: 280 -MMQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY 335
++ + I TQ + + G ++ ++++ ++E +L + IL H+ ++
Sbjct: 267 PSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEF 326
Query: 336 WDKFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA 390
+ C+ + + + + QG ++D D + + G L + L KK S
Sbjct: 327 NFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKK 386
Query: 391 VLKES---------DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
+ + D+ R I + M N ++TGN S + M G + +
Sbjct: 387 IADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQV 439
Query: 442 INRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
++R+ Y+S + R S F++ R S PR L+ WG +CP TP+G CGL+ +L
Sbjct: 440 LSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALM 499
Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
I+ + + ++ S L + L S P +V L+G I+G I D LV
Sbjct: 500 THITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP-NVFLVFLNGNILGVIRDH--KKLV 556
Query: 560 PKLRMLKIVG---EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM-------- 608
R+++ G E + S + +Y+ + GR+ RP +
Sbjct: 557 NTFRLMRRAGYINEFVSISTNLTDR-----------CVYISSDGGRLCRPYIIVKKQKPA 605
Query: 609 -------NLAAGN-----------IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDF 650
LA G +E++ E+ +I + + TTH E+
Sbjct: 606 VTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL-YEHTINKDTTHLEIEPFTL 664
Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
L A LIP P NQSPRN YQC MGKQ MGT N R + +Y L P P +
Sbjct: 665 LGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKT 724
Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
+ ++ + P G NA VAV+SY+GYD+EDA++LNK+S +RGF ++K+ L+
Sbjct: 725 IELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR--- 781
Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
Y +T + V G M+ A + ++ L D G + +E+K
Sbjct: 782 -YTNQT-FDKVMGPMLDAATRKPIWRHEIL-----------DADGICSPGEKVENK---Q 825
Query: 831 GLVYVGAKLNERDPMYSYWKESENRY--VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
LV + P+ + +Y V Y G + +E V +SS + +
Sbjct: 826 VLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK--- 882
Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
+ R R P +GDKF+SR GQKG+C + P ED+PF DSG+ PDI+ NPHGFPSRMT+
Sbjct: 883 --MLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTV 940
Query: 949 GFL 951
G L
Sbjct: 941 GKL 943
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 980 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 250 bits (638), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 243/961 (25%), Positives = 408/961 (42%), Gaps = 147/961 (15%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
H+ S++ +D G+ +++ ++ +I +K V+ E + G YP
Sbjct: 33 HLDSYNAFIDHGMQEVIDEFGGVKPDIPDFEVKFGKVRLGEPEFQEAQG----QRKPLYP 88
Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERG 191
+AR YS P + + +G + +G +PIMLKSK C L L+ +LI+ G
Sbjct: 89 MDARIRNLTYSAPIYLELIPVVNGVSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLG 148
Query: 192 EHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLL--FSDLGVYIRSVKRD 249
E P + GGYFIV G E+++ + I + + ++R+ +NR + FS Y R++
Sbjct: 149 EDPKDPGGYFIVNGSERVI-VSIEDLAPNKTLVERDERQNRIIAKCFSYRHGY-RALITV 206
Query: 250 ESATNNVLH-----------FVTNGSARFMFSHRKSMCLLG--------MMQSLHEEG-I 289
E + +L+ FV A + S R+ + + + +L + +
Sbjct: 207 ERRKDGILYVKLPNVPRPVKFVYVMRALGLLSDREIVEAVSDDPRIQHVLFDNLEDASDV 266
Query: 290 HTQHDSKVFFGQIF--KEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKFLCLS 343
TQ ++ + G++ + +Y LR + + N +LPH+ D K L
Sbjct: 267 TTQEEALDYIGKLSLPGQPKEYRLRRAQNI------IDNNLLPHMGVEEKDRKAKAYYLG 320
Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------KEKSGTSAVLKE 394
M ++ + G+ D +D + + G L + L + + T ++
Sbjct: 321 MMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRK 380
Query: 395 SDIYA----------AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINR 444
+ Y + R + + + LATG+ G+ QL+ + ++
Sbjct: 381 GERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYI-------- 432
Query: 445 MRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISE 504
+SH R V +E E R L WG ICP TP+G CGL+ +L QI+
Sbjct: 433 -STLSHLRRVT-SPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITT 490
Query: 505 YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQAL-MVMLDGRIVGYILDQIATSLVPKLR 563
+P + ++ L LG++P+ + P L + L+G +VG + D V ++R
Sbjct: 491 GVPEE---EVREYLERLGVVPIE---ERRPNPDLWRLYLNGVLVGTVED--GEGFVNRIR 542
Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---------------VM 608
+ G KI + + + + +Y+ + GR+ RP V
Sbjct: 543 TDRRSG-KISDIINVALYQDED-----VKEIYVNSDDGRVRRPLIIVENGRPKLTREHVE 596
Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT----------THRELSKTDFLSNLANLI 658
+ G++ W + ++ +E + TH EL L A+L+
Sbjct: 597 AIKNGSLTWSDLVKMGVIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPASLV 656
Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
P P+ N PRN Y M KQ++G N+R + + + + P P + +
Sbjct: 657 PYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEE 716
Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
P G N +VAV+SY GY+MEDA+I+NK+S ERG A F++ E + Y G +T
Sbjct: 717 RPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEK---RYLGGQTDR 773
Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSD-------KWQTKDYF-GRDPANKALEDKLGPD 830
+ +Q + G +Y RH+ D K KD GR + LE++ G
Sbjct: 774 FEIPDPTIQG--YLGERYY---RHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLG 828
Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
G++ E R + E V+ V + TE G T
Sbjct: 829 GIIL-----------------QERRETSLTVRPSETGVVDKVII----TETGDGT-KLVK 866
Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
+ R R P GDKFASR GQKG+ + P ED+P+T+SG+VPD++ NPHG PSRMT+G
Sbjct: 867 VTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQ 926
Query: 951 L 951
L
Sbjct: 927 L 927
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
G+ + G E MY G+ G ++A +F GV++YQRL HMV+DK +
Sbjct: 964 GFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHAR 1007
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 240 bits (612), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 253/967 (26%), Positives = 408/967 (42%), Gaps = 159/967 (16%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIV---KAAISEPKVPAGPVGIHFNK 128
H+ SF+ L L + + I E+ G +KL + K +I E GP+ +
Sbjct: 24 HLDSFNDFLRNKLQQVIYEQGEIVTEVPGLKIKLGKIRYEKPSIRE--TDKGPM----RE 77
Query: 129 YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI 188
P EAR YS P +++ + G +G +PIMLKS NL +LI
Sbjct: 78 ITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPIDKLI 137
Query: 189 ERGEHPDEWGGYFIVGGHEKLV---------RLLINNRRN-----HPIAIKRNAWKNR-- 232
E GE P + GGYFIV G EK++ R+L++ ++ H + +A R
Sbjct: 138 EIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQ 197
Query: 233 ----GLLFSDLGVYIRSV--KRDESATNNVLHFVTNGSARFMFS---HRKSMCLLGMMQS 283
L S + + +V + + L FVT+ + S ++ L + Q+
Sbjct: 198 VMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELLPSLEQA 257
Query: 284 LHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL----DDYWDKF 339
I + ++ F G ++ + N ++ + ++ LPHL +D K
Sbjct: 258 ---SSITSAEEALDFIGN----RVAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKG 310
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK-------------EKS 386
L+ K+ + G + D +D + + G L+ L + EKS
Sbjct: 311 YYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKS 370
Query: 387 GTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMR 446
+ + A RA I + + LATGN G+ QL+ + ++ M
Sbjct: 371 KVRG--RRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLSM-------- 420
Query: 447 YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
+SH R V S + + E R L WG +CP TP+G GL+ +L Q+S I
Sbjct: 421 -LSHLRRVV-SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGI 478
Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQA---------LMVMLDGRIVGYILDQIATS 557
V+ + V LG++ + VI+ I EQ V L+GR++GY D
Sbjct: 479 NESVVER---VAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYED--GKE 533
Query: 558 LVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN-------- 609
L K+R + G K+ + + Y+ +++ GR+ RP++
Sbjct: 534 LAKKIRESRRQG-KLSDEVNVAYI-----ATDYLNEVHINCDAGRVRRPLIIVNNGTPLV 587
Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
+ G IE+I E+ + + ++ P TH E+ + L
Sbjct: 588 DTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPD-HTHLEIWPSAIL 646
Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
+A++IP P+ NQSPRN YQ M KQ++G N++ + + + L P P +
Sbjct: 647 GIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRML 706
Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
+ ++ P G NAI+A++SYTGY+MED++I+NKSS ERG +++S F L Y
Sbjct: 707 GVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERG-----MYRSTFFRL-----Y 756
Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK--LGP 829
E Y G + +V+ + K Y G+D + LED + P
Sbjct: 757 STEEVKYPG-----------------GQEDKIVTPEAGVKGYKGKD-YYRLLEDNGVVSP 798
Query: 830 D-----GLVYVGAKLNER--DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
+ G V +G R E R + E V++V ++ EG
Sbjct: 799 EVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETL-EGN 857
Query: 883 SVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGF 942
+ + R R P +GDKFA+R GQKG+ + D+P+T G+VPDI+ NPH
Sbjct: 858 KLVK----VRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHAL 913
Query: 943 PSRMTIG 949
PSRMTIG
Sbjct: 914 PSRMTIG 920
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 774 TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
TE +Y G G ++++I FG+V+YQ+L HMV+DK +
Sbjct: 966 TEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHAR 1003
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 234/913 (25%), Positives = 383/913 (41%), Gaps = 166/913 (18%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R + YS P V + ++ + +GR+P+ML+ C L + +L +
Sbjct: 107 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKL 166
Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLL---INNRRNHPIAIKRNAWKNRGLLFSD 238
E P + GGYF+V G EK++ ++L N + + K+R L+ S
Sbjct: 167 NECPLDPGGYFVVRGQEKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLVLSK 226
Query: 239 LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGM---MQSLHEEGIHTQHDS 295
G Y + S T+++ V A + S ++ L+G+ Q+ + ++
Sbjct: 227 HGKYYL---KHNSMTDDI-PIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNL 282
Query: 296 KVFFGQ---------IFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDY--WDKFLCL 342
KVF Q + ++ Q E + +LT IL H+ D++ K + +
Sbjct: 283 KVFTQQRALEYMGSKLVVKRFQSATTKTPSEEARELLLTT-ILAHVPVDNFNLQMKAIYV 341
Query: 343 SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK---------EKSGTS 389
S M ++ D D + + GSL + L K+ +K+
Sbjct: 342 SMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK 401
Query: 390 AVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
+ D+ RA+ I + + + +++GN + + M+ +G + + ++R+ Y+S
Sbjct: 402 VKAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFK----MERAG---VTQVLSRLSYIS 454
Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIP 507
+ R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ +
Sbjct: 455 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVE 514
Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPE---------QALMVMLDGRIVGYILDQIATSL 558
+ P ++V+ ++ I E +V ++G ++G L+ L
Sbjct: 515 ER-----PVMIVAF-----NAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNH--KHL 562
Query: 559 VPKLRMLKIVGEKIPK-SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN----- 609
V LR ++ G S+ Y +R +Y+ T GR+ RP V N
Sbjct: 563 VRNLRYMRRKGRMGSYVSVHTSYTQR---------CIYIHTDGGRLCRPYVIVENRRPLV 613
Query: 610 ------------------LAAGNIEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDF 650
L G IE++ E+ D I E TTH E+
Sbjct: 614 KQHHLDELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEDQIEDRTTHLEIEPFTL 671
Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVH 710
L A L+P P NQSPRN YQC MGKQ MG N + + +Y L P +P +
Sbjct: 672 LGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKT 731
Query: 711 YDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
+ + D P G NA VAV+SY+GYD+EDA+ILNK+S +RG+ ++K+ ++
Sbjct: 732 IELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKR--- 788
Query: 771 YYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPD 830
Y +T + R+ + D K F D L D
Sbjct: 789 -YANQT--------------------FDRIMGPMKDALTNKVIFK--------HDVLDTD 819
Query: 831 GLVYVGAKLNER--------------DPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSS 876
G+V G ++ + +P+ + V Y G E +E V +S+
Sbjct: 820 GIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSA 879
Query: 877 GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
E + I R R P +GDKF+SR GQKG+ + ED+PF D G+ PD++
Sbjct: 880 NAEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMI 934
Query: 937 FNPHGFPSRMTIG 949
NPHGFPSRMT+G
Sbjct: 935 MNPHGFPSRMTVG 947
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 749 ERGFAHGCIF-----KSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRH 802
E F +G F + + ELE G+NY G + YSG+ G+ ++A I+ G V+YQ+L+H
Sbjct: 961 EGKFHYGTAFGGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKH 1020
Query: 803 MVSDKWQTK 811
MV DK +
Sbjct: 1021 MVQDKMHAR 1029
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens
GN=POLR2B PE=1 SV=1
Length = 1174
Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 204/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)
Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
+L +LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401
Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
L + +LKE IYA A + I + LATGN K
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458
Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
+ QA V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511
Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
TP+G GL+ +L IS PS +L L M L + + A +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567
Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
++G VG D L+ LR L+ + I + ++ R + + ++T
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618
Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
GR+ RP++ + A+G +E+I T E+ + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
+ AY TH E+ + L A++IP PD NQSPRN YQ MGKQ MG
Sbjct: 679 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738
Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
N+ + + L P P + L P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798
Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
S+ +RGF F+S+F Y Y + G D Q ++F Q +RH
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842
Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
A+ DKL DGL+ G +++ D P ES N
Sbjct: 843 ------------------AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884
Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
R RY+ ++ C +R S +G + VT N C I R R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937
Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
R GQKG C +++ ED+PFT G+ PDI+ NPH PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V + + + + +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 221/905 (24%), Positives = 367/905 (40%), Gaps = 141/905 (15%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R Y V + ++ + +GR+P+ML+S +C L ++
Sbjct: 123 PHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAAL 182
Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLI-----------------NNRRNHPIAI 224
E P + GGYFIV G EK++ R+++ + R++ I
Sbjct: 183 NECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSKTYVI 242
Query: 225 KRNA--WKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARF--MFSHRKSMCLLGM 280
+N + + D+ + + + + V A + +F+ C
Sbjct: 243 TKNGKLYLKHNSVADDIPIVVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECA--- 299
Query: 281 MQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYW 336
+ I+T + + G K + L E +L +L H++ ++
Sbjct: 300 -----KLNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFR 354
Query: 337 DKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS----GT 388
K + + M ++ + +Q+D D + + + G L + L KK S
Sbjct: 355 PKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNI 414
Query: 389 SAVLK------ESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
VLK E D Y S I M L+TGN S + M+ +G +
Sbjct: 415 DKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFK----MERAG---VTH 467
Query: 441 NINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------ 492
++R+ Y+S + R S F++ R S PR L+ +G +C TP+G CGL
Sbjct: 468 VLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLAL 527
Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD 552
+ H+TT+ + I I + V G + +V L+G I+G +
Sbjct: 528 MTHITTDEEEEPIIKLAYAFGIEDIHVISGR-------ELHSHGTYLVYLNGAILG--IS 578
Query: 553 QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMN--- 609
+ + V R L+ G+ P +++ ++ +++ T GR+ RP++
Sbjct: 579 RYPSLFVASFRKLRRSGKISP--FIGIFINTHQRA------VFISTDGGRICRPLIIVQN 630
Query: 610 -----------------------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELS 646
L G +E++ E+ I + ++ P TTH E+
Sbjct: 631 GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPD-TTHLEIE 689
Query: 647 KTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFF 706
L +A LIP P NQSPRN YQC MGKQ +G N + LY + P P
Sbjct: 690 PFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMV 749
Query: 707 RPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
+ + + D P G NA VA++SY+GYD+EDA++LNKSS +RGF +F + +
Sbjct: 750 KTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVR 809
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFF--GVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
N GT ++ + GVV L + + Y + AL
Sbjct: 810 KYPN--GTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNAL- 866
Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSV 884
D + +G ++ ES + Y E ++ V +++ ++ +
Sbjct: 867 -----DNSITLG---------HTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLI 912
Query: 885 TPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPS 944
+ R R P +GDKF+SR GQKG+C V ED+PF D G+ PDI+ NPHGFPS
Sbjct: 913 K-----VLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPS 967
Query: 945 RMTIG 949
RMT+G
Sbjct: 968 RMTVG 972
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
I +E GYNY G + + SG+ G ++A IF G ++YQ+L+HMV DK + R +
Sbjct: 1006 ILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQ 1065
Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGG 882
+ DG + +G ERD + +Y G ++ +E + +SS +
Sbjct: 1066 PTEGRSRDGGLRLGEM--ERDCLIAY--------------GASQLLLERLMISSDACD-V 1108
Query: 883 SVTPNCAYIGYR 894
V C +GY+
Sbjct: 1109 DVCGQCGLLGYK 1120
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus
GN=Polr2b PE=2 SV=2
Length = 1174
Score = 213 bits (543), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 203/704 (28%), Positives = 305/704 (43%), Gaps = 139/704 (19%)
Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYL 378
+L +LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 342 VLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 401
Query: 379 QLLKKEKSGTSAVLKESDIYA--------------AFRASSIESAMTNFLATGNVSAGKN 424
L + +LKE IYA A + I + LATGN K
Sbjct: 402 FLFR---GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458
Query: 425 STLQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICP 481
+ QA V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP
Sbjct: 459 A----HQARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCP 511
Query: 482 VHTPDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
TP+G GL+ +L IS PS +L L M L + + A +
Sbjct: 512 AETPEGHAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKI 567
Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
++G VG D L+ LR L+ + I + ++ R + + ++T
Sbjct: 568 FVNGCWVGIHKD--PEQLMNTLRKLRRQMDIIVSEVSMIRDIRERE-------IRIYTDA 618
Query: 601 GRMLRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT 631
GR+ RP++ + A+G +E+I T E+ + + +T
Sbjct: 619 GRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMT 678
Query: 632 MKE------AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCL 685
+ AY TH E+ + L A++IP PD NQSPRN YQ MGKQ MG
Sbjct: 679 PDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYIT 738
Query: 686 NWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
N+ + + L P P + L P G N+IVA+ SYTGY+ ED++I+N+
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNR 798
Query: 746 SSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHY--QRLRHM 803
S+ +RGF F+S+F Y Y + G D Q ++F Q +RH
Sbjct: 799 SAVDRGF-----FRSVF------YRSYKEQESKKGFD----QEEVFEKPTRETCQGMRH- 842
Query: 804 VSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD---------PMYSYWKESEN 854
A+ +KL DGL+ G +++ D P ES N
Sbjct: 843 ------------------AIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884
Query: 855 RYVTCRYSGKEEMCVEVVRMS-SGFTEGGSVTPN------CAYIGYRIQRNPTVGDKFAS 907
R RY+ ++ C +R S +G + VT N C I R R P +GDKFAS
Sbjct: 885 R----RYTKRD--CSTFLRTSETGIVDQVMVTLNQEGYKFCK-IRVRSVRIPQIGDKFAS 937
Query: 908 RAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
R GQKG C +++ ED+PFT G+ PDI+ NPH PSRMTIG L
Sbjct: 938 RHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHL 981
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V + + + + +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK ++
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSR 1062
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 237/922 (25%), Positives = 361/922 (39%), Gaps = 162/922 (17%)
Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVP-----IMLKSKRCHLRNLTP 184
+P EAR Y+ P + V + G + RVP +ML+S C L L
Sbjct: 91 FPNEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGD 150
Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLV----RLLINN----RRNHPI---------AIKRN 227
LI+ GE P + GGYFIV G EK++ R+ N ++ P ++
Sbjct: 151 KDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEK 210
Query: 228 AWKNRGLLFSDL-------GVYIRSVKRDES--ATNNVLHFVTNGSARFMFSHRKSMCLL 278
+ +N L L V + VK+D L F+++ + +
Sbjct: 211 SSRNPSTLSMKLCRSPGVIRVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYEDDEEMF 270
Query: 279 GMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY--- 335
+++ EEG Q D V I K + + +L +LPH+
Sbjct: 271 ELLKESIEEGTVVQ-DQNVALDYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFC 329
Query: 336 -WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGTSA 390
K + ++ +L V G D D + + G SL+ L KK T+
Sbjct: 330 ETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTR 389
Query: 391 VL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
+ +E +I +AS I LATGN + + +G + N
Sbjct: 390 HMQKCIENGREFNIALGLKASIITQGFRYALATGNWG---DQAKAMQTRAGVAQVLNRYN 446
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
+ +SH R V+ +E + + PRQL WG +CP TP+G CGL+ +L+ IS
Sbjct: 447 FVSTLSHLRRVNT-PIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYIS 505
Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
S L + L G+ L + S + A + ++G VG D + L+ L+
Sbjct: 506 VGSSSGPLVEF---LEECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVG--LIKSLK 560
Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM--------------- 608
+L+ E + K + IV R ++ + + + GR RP++
Sbjct: 561 LLRRSLE-MDKEVSIVRDIREKE-------IRVQSDAGRPCRPLLVVKDNKLVITAEDIR 612
Query: 609 NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT--------------------THRELSKT 648
L G I+W F++ +E I TH E+
Sbjct: 613 KLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPA 672
Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT-------P 701
L A+ IP PD NQSPRN YQ MGKQ MG N+ L R+ T P
Sbjct: 673 LILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNF-------LLRMDTLSNILFYP 725
Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
P + L P G NA+VA+ Y+GY+ ED++I+N+S+ +RG +F+S
Sbjct: 726 QKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRG-----LFRSF 780
Query: 762 FIELESGYNYYGTETMYS-GVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
F Y E+M GV+ + V+ + L +
Sbjct: 781 FYR-----TYTDQESMSRPGVNEEFCKPS-RGAVLRMKNLNY------------------ 816
Query: 821 KALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
+KL DGL+ G ++ D P+ + ++ V M R
Sbjct: 817 ----NKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAM----RR 868
Query: 874 MSSGFTEGGSVTPNCAY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
+G + VT Y + R R P +GDKFASR QKG + ED+PFT
Sbjct: 869 TETGIVDTVIVTNKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSE 928
Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
G+VPDI+ NPH PSRMTIG L
Sbjct: 929 GIVPDIIINPHAIPSRMTIGHL 950
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
G+ G E MY+G+ G ++AQ+FFG +YQRL+HMV DK +
Sbjct: 987 GFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHAR 1030
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 230/968 (23%), Positives = 380/968 (39%), Gaps = 212/968 (21%)
Query: 127 NKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQ 186
N+ P EAR Y P + + DG G+ +VG +P+M++SK C L Q
Sbjct: 100 NQITPNEARLRDLNYLAPVTLKLRIVEDGIEKGSEIIKVGDLPVMVRSKICTLSEENLDQ 159
Query: 187 LIER----------------GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
IE+ GE PD+ GGYFI+GG E+++ L + N + W+
Sbjct: 160 YIEKNNGPIGLSRREKLQYVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMV----EWE 215
Query: 231 NR-------GLLFSDLGVY--IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMM 281
+R +FS G + + S+++ T NV G+ + M LG+
Sbjct: 216 DRYESKVEVSKVFSQRGGFRALTSMEKGTDGTINVSIPSVAGTVPLVIL----MKALGLE 271
Query: 282 QS-----------------------------LHEEGIHTQHDSKVFFGQIFKEKLQYDLR 312
+ L G++T D+ + + F + R
Sbjct: 272 RDVDVHDAIASVPEMEPIIYSNIEDSKNPKVLPPNGVNTTEDAISYLEKRFAAGQAKEFR 331
Query: 313 HLNEVEICDYMLTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQ 368
+ ML + +LPHL D K + L M L + G+ + D +D + +
Sbjct: 332 D----KKISQMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANK 387
Query: 369 EIMTGGSLYLQLLKKEKSGTSAVLKE-----SDIYAAFRASSIESAMTNFLATGNVSAGK 423
I G L +L + S +V+K+ Y R I A+ L T V
Sbjct: 388 RIKLAGDLMDELFR---SAFQSVMKDLKYQLEKTYNRKRGIKIRPAVRQDLLTQRVLHAM 444
Query: 424 NSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEP----RQLRTDAWGFI 479
++ + +G + + ++ + +SH R + + ++P R L WG I
Sbjct: 445 STGNWIGGRTGVSQLLDRVSNLSTISHLRRI-----ISPLTRTQPHFEARDLHPTQWGRI 499
Query: 480 CPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM 539
CP TP+G CGL+ + +++ I SV+ L + + V++ P++
Sbjct: 500 CPNETPEGQNCGLVKNAALLINVTQGIDPD------SVMEILKGMDVREVLEESPKKG-R 552
Query: 540 VMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVY-------LKRPEKGMGLYP 592
V L+G +GY D LV ++R + G ++ + + Y + ++G P
Sbjct: 553 VYLNGDFIGYHDD--PRYLVSRIREERRSG-RMSDEVNVRYDDNTNEVIVNSDRGRLRRP 609
Query: 593 GLYLFTGPGRMLRPVMN------------LAAGNIEWIGTFEQVFMDICITMKE------ 634
L L G + R ++ + G IEW+ E+ + + +
Sbjct: 610 LLILKDGKTVLDRTMIERLKHGEISFEDLVKQGAIEWLDAEEEEDTYVAVYAYDIPEKCP 669
Query: 635 -------------AYPGIT-----------------------THRELSKTDFLSNLANLI 658
PG + TH E+ L +A++I
Sbjct: 670 HCNSYLYRSMVDWVNPGESEITLECGFCHQRFNVPSKLSKENTHLEIDPAMILGVVASII 729
Query: 659 PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDN 718
P P+ N SPR M KQ++G N R + + + L P P R D + D
Sbjct: 730 PYPEHNSSPRITIASAMAKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYIHYDR 789
Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
P G N +VAV+SY GY+++DA+++NK++ ERG F++ Y E Y
Sbjct: 790 RPAGQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRT----------YSAEERRY 839
Query: 779 SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ--TKDYFGRDPAN--KALEDKLGPDGLVY 834
G DK++ T D G K L+D G+++
Sbjct: 840 PGGQ----------------------EDKFEIPTHDIIGARAEEYYKNLDDS----GIIF 873
Query: 835 VGAKLNERDPMYS------YWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVT--- 885
A + D + + +E E R R + E V + SG+ + +T
Sbjct: 874 PEAYVEGSDVLIGKTSPPRFLEEGEERLGPQR---RRESSVTMRPNESGYVDNVFLTVSE 930
Query: 886 --PNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFP 943
I R +R P +GDKFASR GQKG+ + P ED+PFT+ G++PD++FNPH P
Sbjct: 931 SNSRVVKIKVRSERIPELGDKFASRHGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIP 990
Query: 944 SRMTIGFL 951
SRMT+G +
Sbjct: 991 SRMTVGHI 998
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 752 FAHGCIF-----KSMFIEL-ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVS 805
F G IF KS+ L + G+ TE MY G+ G +A IF GV++YQ+L HMV+
Sbjct: 1013 FIDGTIFSGEPEKSLRDALVKYGFRKSSTEVMYDGITGRRFKADIFVGVIYYQKLHHMVA 1072
Query: 806 DKWQTK 811
K+ +
Sbjct: 1073 GKFHAR 1078
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 194/694 (27%), Positives = 298/694 (42%), Gaps = 118/694 (17%)
Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
+L +LPH+ D+ + K L +M +L G +LD D + + G
Sbjct: 343 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLA 402
Query: 375 ----SLYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
L+ L+K+ + T + K+ ++ A + + I + LATGN K +
Sbjct: 403 FLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKA-- 460
Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
QA V ++ +NR+ + +SH R V+ ++ + ++PRQL WG +CP T
Sbjct: 461 --HQARAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMLCPAET 515
Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
P+G GL+ +L IS PS +L L M L + S A + ++
Sbjct: 516 PEGAAVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVN 571
Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
G VG D L+ LR L+ + I + ++ R + + ++T GR+
Sbjct: 572 GCWVGIHRD--PEQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRI 622
Query: 604 LRPVMNL-----------------------------AAGNIEWIGTFEQVFMDICIT--- 631
RP++ + A+G +E+I T E+ + I ++
Sbjct: 623 CRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYD 682
Query: 632 MKE----AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW 687
+K+ AY TH E+ L A++IP PD NQSPRN YQ MGKQ MG N+
Sbjct: 683 LKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNF 742
Query: 688 RYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSS 747
+ + L P P + L P G N+IVA++ YTGY+ ED++ILN S+
Sbjct: 743 HVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 802
Query: 748 YERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
ERGF F+S+F +Y +E G D + G R H
Sbjct: 803 VERGF-----FRSVFYR-----SYKDSENKRVG-DQEENFEKPHRGTCQGMRNAHY---- 847
Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYS 862
DKL DG++ G +++ D + + E T R+S
Sbjct: 848 -----------------DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFS 890
Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNC-----AYIGYRIQRNPTVGDKFASRAGQKGICSV 917
K + + +G + +T N I R R P +GDKFASR GQKG C +
Sbjct: 891 -KRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 949
Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
++ ED+ FT GL PDI+ NPH PSRMTIG L
Sbjct: 950 QYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHL 983
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE-----VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V + + + + + +G++PIML+S C L LT
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDR 170
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 171 DLTELNECPLDPGGYFIINGSEKVL 195
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
S F++ E GY+ G E MY+G G + AQ+F G +YQRL+HMV DK ++
Sbjct: 1014 STFLQ-EYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 1064
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis
elegans GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 187/699 (26%), Positives = 296/699 (42%), Gaps = 129/699 (18%)
Query: 323 MLTNCILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG---- 374
+L +LPH+ ++ + K + +M +L G +LD D I + + G
Sbjct: 348 ILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLA 407
Query: 375 ----SLYLQLLKKEKSGTSAVLKESDIYA---AFRASSIESAMTNFLATGNVSAGKNSTL 427
SL+ LLK+ + + ++D +A + S+I +T LATGN K +
Sbjct: 408 FLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAH- 466
Query: 428 QLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHT 484
Q+ V ++ +NR+ Y +SH R + +E + ++PRQL WG +CP T
Sbjct: 467 ---QSRAGV--SQVLNRLTYTATLSHLRRAN-SPIGREGKLAKPRQLHNTQWGMVCPAET 520
Query: 485 PDGTPCGLLNHLTTNCQIS-EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
P+G GL+ +L IS +P +L L M L V S A + ++
Sbjct: 521 PEGQAVGLVKNLALMAYISVGSLPEPIL----EFLEEWSMENLEEVSPSAIADATKIFVN 576
Query: 544 GRIVGYIL--DQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
G VG DQ+ T+L R + I+ ++ +I + + ++T G
Sbjct: 577 GAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDRE-----------IRIYTDAG 625
Query: 602 RMLRPVMNL-------------------------------AAGNIEWIGTFEQVFMDICI 630
R+ RP++ + G +E I + E+ I +
Sbjct: 626 RVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAM 685
Query: 631 TMKE----AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
++ Y TH E+ L A++IP PD NQSPRN YQ MGKQ MG N
Sbjct: 686 MPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTN 745
Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
+ + + L P P + L + P G NAIVA++SY+GY+ ED++I+N S
Sbjct: 746 FHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNS 805
Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
+ +RG +F+S+F +Y E + +++ +RH
Sbjct: 806 AIDRG-----LFRSVFYR-----SYRDNEANLDNANEELIEKPTREKC---SGMRH---- 848
Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKL--------------NERDPMYSYWKES 852
+L DKL DG++ G ++ + D + + K+
Sbjct: 849 ---------------SLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKY 893
Query: 853 ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
R + E V+ V +S ++G I R R P +GDKFASR GQK
Sbjct: 894 PKRDASTFLRSSETGIVDQVMLSLN-SDGNKFVK----IRMRSVRLPQIGDKFASRHGQK 948
Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
G + + ED+PFT GL PDI+ NPH PSRMTIG L
Sbjct: 949 GTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHL 987
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 30/160 (18%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYY- 130
+ SFD + + VED P+E + + L ++ A + FN+ Y
Sbjct: 50 QLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPA---------KFSLKFNQIYL 100
Query: 131 ----------------PTEARQTRSVYSGPF--NVTVAWSWDGKAGGTFTKEV--GRVPI 170
P EAR Y+ P ++T + D A +V G+VP+
Sbjct: 101 SKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPV 160
Query: 171 MLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
ML+S C L N+T L E E P + GGYF++ G EK++
Sbjct: 161 MLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVL 200
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
E GY+ G E MY+G G + QIFFG +YQRL+HMV DK ++
Sbjct: 1023 EYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSR 1068
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 196 bits (499), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 169/610 (27%), Positives = 262/610 (42%), Gaps = 105/610 (17%)
Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
KE ++ A +A +I S + LATGN Q A +++ +NR+ Y +S
Sbjct: 432 KEVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 484
Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
H R ++ +E + ++PRQL WG +CP TP+G CGL+ +L I+
Sbjct: 485 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 540
Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
I L G + S+ QA + ++G VG D ++ K
Sbjct: 541 AAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRD---PDMLVKTLRRLRRR 597
Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
+ + +V R ++ L ++T GR RP+ +
Sbjct: 598 VDVNTEVGVVRDIRLKE-------LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRE 650
Query: 611 -----------AAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTD 649
A G IE+I T E+ I +T+ +EAY TH E+ +
Sbjct: 651 SAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSL 710
Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
L A++IP PD NQSPRN YQ MGKQ MG N++++ Y L P P
Sbjct: 711 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 770
Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
+ L P G NAIVA+ Y+GY+ ED++I+N+SS +RGF F+S+F +
Sbjct: 771 AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 819
Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
Y E G +V + + D DKL
Sbjct: 820 RSYRDEEKKMGT---------------------LVKEDFGRPDRGSTMGMRHGSYDKLDD 858
Query: 830 DGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
DGL G +++ D + + E + + RY+ + + + + +G + +T
Sbjct: 859 DGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYT-RRDHSISLRHSETGMVDQVLLTT 917
Query: 887 NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
N ++ R++ R P +GDKF+SR GQKG + + ED+P+T G+ PDI+ NPH
Sbjct: 918 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHA 977
Query: 942 FPSRMTIGFL 951
PSRMTIG L
Sbjct: 978 IPSRMTIGQL 987
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
+P AR YS P V V DG+ FTK +G+VPIML+S C L
Sbjct: 111 FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLF 170
Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
+ L E GE P + GGYFI+ G EK++ NH K+
Sbjct: 171 QNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 216
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
GY G E MY+G G + A IF G +YQRL+HMV DK ++ GR P
Sbjct: 1024 GYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1073
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 165/610 (27%), Positives = 256/610 (41%), Gaps = 105/610 (17%)
Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
K+ ++ A +A +I S + LATGN Q A +++ +NR+ Y +S
Sbjct: 431 KDVNLQFAIKAKTITSGLKYSLATGNWG-------QANAAGTRAGVSQVLNRLTYASTLS 483
Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
H R ++ +E + ++PRQL WG +CP TP+G CGL+ +L I+
Sbjct: 484 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT---VGS 539
Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
I L G + ++ QA + ++G VG D + ++
Sbjct: 540 AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDV 599
Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNL------------------- 610
+ + LK L ++T GR RP+ +
Sbjct: 600 NTEVGVVRDIRLKE----------LRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRE 649
Query: 611 -----------AAGNIEWIGTFEQVFMDICITMKE----------AYPGITTHRELSKTD 649
A G IE+I T E+ I +T+ + AY TH E+ +
Sbjct: 650 SPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSL 709
Query: 650 FLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPV 709
L A++IP PD NQSPRN YQ MGKQ MG N++++ Y L P P
Sbjct: 710 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 769
Query: 710 HYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGY 769
+ L P G NAIVA+ Y+GY+ ED++I+N+SS +RGF F+S+F +
Sbjct: 770 AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGF-----FRSLF------F 818
Query: 770 NYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP 829
Y E G +V + + D DKL
Sbjct: 819 RSYRDEEKKMGT---------------------LVKEDFGRPDRASTMGMRHGSYDKLDD 857
Query: 830 DGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP 886
DGL G +++ D + + + + RY+ K+ + +G + +T
Sbjct: 858 DGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDH-STSLRHSETGMVDQVLLTT 916
Query: 887 NC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHG 941
N ++ R++ R P +GDKF+SR GQKG + + ED+P+T G+ PDI+ NPH
Sbjct: 917 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 976
Query: 942 FPSRMTIGFL 951
PSRMTIG L
Sbjct: 977 IPSRMTIGQL 986
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 130 YPTEARQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLR 180
+P AR YS P V V DG+ FTK +G+VPIML+S C L
Sbjct: 110 FPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLY 169
Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
+ L E GE P + GGYFI+ G EK++ NH K+
Sbjct: 170 QNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 215
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
GY G ETMY+G G + A IF G +YQRL+HMV DK ++ GR P
Sbjct: 1023 GYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSR---GRGPVQ 1072
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 178/637 (27%), Positives = 278/637 (43%), Gaps = 117/637 (18%)
Query: 374 GSLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESAMTNFLATGNVSAGKNST 426
G+L+ QL KK L KE +A ++ +I S + LATGN + K+
Sbjct: 399 GTLFRQLFKKLTKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGG 458
Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
+ SG +A+ +NR+ + +SH R ++ +E + ++PRQL WG +CP
Sbjct: 459 TK----SG---VAQVLNRLTFASTLSHLRRLN-TPIGREGKLAKPRQLHNTHWGIVCPSE 510
Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
TP+G CGL+ +L IS S+ + + + + ++ + S A + ++
Sbjct: 511 TPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEISDL--SSIFSATKIFVN 568
Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
G VG + L+ LR+L+ G+ + + +V R ++ L L+T PGR
Sbjct: 569 GMWVG--IHHQPDKLLSTLRLLRRCGD-VSVEVSVVRDIREKE-------LRLYTDPGRC 618
Query: 604 LRPVMN---------------------------LAAGNIEWIGTFEQVFMDICITMKEAY 636
RP+ L+ G +E+I E+ + I +T ++
Sbjct: 619 CRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDAEEEETVLIAMTPEDLV 678
Query: 637 P-------GITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
P TH E+ + L ++IP PD NQSPRN YQ MGKQ MG N++
Sbjct: 679 PMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQL 738
Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
+ + L P P + L P G N VA+ Y+GY+ ED++ILN+S+ +
Sbjct: 739 RMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAID 798
Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQ 809
RG +F+SMF Y Y E S+M+ V +K +
Sbjct: 799 RG-----LFRSMF------YRAYKDEQKKQ---TSLMEE---------------VFEKPE 829
Query: 810 TKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMY---------------SYWKESEN 854
G +K+ DGLV G ++ D + + ++
Sbjct: 830 RDTCAG---MRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKR 886
Query: 855 RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGI 914
T S + + +V+ +SG EG + R R P +GDKF+SR GQKG
Sbjct: 887 DSSTALRSSETGIVDQVILTTSG--EGFKF----CKVRVRSMRVPQIGDKFSSRHGQKGT 940
Query: 915 CSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
C + + EDLPFT G+VPDI+ NPH PSRMTIG L
Sbjct: 941 CGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQL 977
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
GY G E MY+G G M AQIF G +YQRL+HMV DK ++
Sbjct: 1014 GYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSR 1057
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKEV------GRVPIMLKSKRCHLR 180
P +AR YS P V TV K T EV G+VPIML+S+ C L
Sbjct: 109 PNQARIRNLTYSAPLFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLN 168
Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
L GE + GGYFI+ G EK++ NH K++
Sbjct: 169 EADDRDLTTMGECSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKS 215
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3
SV=1
Length = 1140
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 162/646 (25%), Positives = 281/646 (43%), Gaps = 108/646 (16%)
Query: 342 LSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY---LQLLKKEKSGTSAVL---KES 395
L+ M K + + +D+ D + + T G LY +LL K+ T ++
Sbjct: 371 LAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYKKFQKTCITQIRNRKP 430
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFR--A 453
DI R S I + + ++G +N+ ++ + ++ ++ + S R
Sbjct: 431 DISNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQ---VVNPKVSLLANYSSLRRVV 487
Query: 454 VHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPS-KVLA 512
+ +E ++SE RQ+ + +CPV TP+G G + ++ CQ++ I + +++
Sbjct: 488 IPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFCQVTTGISTCEIMD 547
Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
QI S V L I+ P L+++++G G +++ +L L
Sbjct: 548 QIDSFGVDL---KCHCTIKD-PNNCLLLLINGSPYG----NGHANVIHRLNFLN------ 593
Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA-----GNI------------ 615
++ IV + +G+ + +F+ GR +RP+ +L G I
Sbjct: 594 DTNISIVV----NRALGV---IEIFSDAGRFIRPIFDLDKICNFEGEIVPSFKWFLDNQL 646
Query: 616 -EWIGTFEQVFMDICITMKEAYPGITTHRELSKTD---FLSNLANLIPMPDCNQSPRNMY 671
+I E I I +++ T L + D +A +IP PD QS RN +
Sbjct: 647 IRYIDINEAAANSIAIELRDLSTNPNTRYNLMELDPCGMFGIVAGIIPFPDRTQSARNCF 706
Query: 672 QCQMGKQTMG-TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
M KQ +G PC N + + V + L P P + ++ +P G NAIVA+
Sbjct: 707 YSSMVKQAIGFVPCHNLKTETVS--HTLNYPQKPLVTTSFAEYNQLNEYPNGINAIVAIA 764
Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI 790
YTGY+ ED++ILNKSS +RG +F ++ YN + + +G+ ++ +I
Sbjct: 765 CYTGYNQEDSIILNKSSIDRG-----LFGTI------TYNTFTAQEKKNGI----IEERI 809
Query: 791 FFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWK 850
+ S+ + +D N L +GPDG+V + ++ + D +
Sbjct: 810 -----------EIPSNAIKIRD------CNYGL---VGPDGIVRLRQRVKKGDVLIC--- 846
Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEG------GSVTPNCAYIGYRI--QRNPTVG 902
VT + ++E V+ + EG +V C + I R P +G
Sbjct: 847 -----KVTIKNKNQDEKLVDSSVIVQHGEEGYVDRIVDNVIDGCRIVKVVIGQMRTPEIG 901
Query: 903 DKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
DKF S QKG C + +P ED+PFT SG+ PDI+ NP+ PSRMTI
Sbjct: 902 DKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTI 947
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 10/175 (5%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
I +F+ + +GL + + + I+++ + L + P + I YP
Sbjct: 36 QIETFNHFISKGLKTIINNESSIKYQSH-DNYSLKFTNIYVEYPSIIDDDRTIR--DLYP 92
Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGG------TFTKEVGRVPIMLKSKRCHLRNLTPA 185
EAR Y+G V V + K G + + ++PIML S CHL TP
Sbjct: 93 QEARNKDLSYTGNVCVNVIEMVENKEGKPPQISEQYRVPIAKIPIMLGSDVCHLSKYTPL 152
Query: 186 QLIE-RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDL 239
+ + G + GGYFI+ G E+++ + N P+ ++ + +L ++
Sbjct: 153 ENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPVCFVKSTSQKEDVLICEM 207
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDY 813
+G++ G+E MYSG G +Q+ IF G +Y RL+HMV DK + +
Sbjct: 991 NGFDPSGSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMHARSH 1037
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/388 (32%), Positives = 174/388 (44%), Gaps = 61/388 (15%)
Query: 594 LYLFTGPGRMLRPVM---------------NLAAGNIEWIGTFEQVFMDICITMKEAYPG 638
+Y+FT PGR RP++ L++G +EW Q ++ +E
Sbjct: 50 IYIFTDPGRARRPLIIVEDGEPLLKEEHLEKLSSGEMEWDDLISQGIIEYLDAEEEENTY 109
Query: 639 IT----------THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
I TH E+ + L A +IP + N SPRN + M KQ +G N+
Sbjct: 110 IAMSPEEVTEEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYN 169
Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
+ + + L P P + D D P G N +VAV+SY GY+MEDA+ILNK+S
Sbjct: 170 LRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASL 229
Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQI-FFGVVHYQRLRHMVSDK 807
ERG A F+S Y TE Y G G + +I GV Y+ R
Sbjct: 230 ERGLARSSFFRS----------YEATERRYPG--GQEDRFEIPEKGVRGYRSER------ 271
Query: 808 WQTKDYFGRDPANKALEDKLGPDGLVYVGAK-----LNERDPMYSYWKESENRYVTCRYS 862
DY D + G V +G L E D + + VT R+
Sbjct: 272 ----DYRHLDEDGIINPETEVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHG 327
Query: 863 GKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT-VGDKFASRAGQKGICSVKWPA 921
EE V+ V ++ EG + A I R QR P +GDKFASR GQKG+ +
Sbjct: 328 --EEGIVDAVLLTE-TVEGSRL----AKIRVREQRQPEFIGDKFASRHGQKGVVGLIVSQ 380
Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
ED+PFT+ G+VPD++ NPH PSRM++G
Sbjct: 381 EDMPFTEDGVVPDLIVNPHAIPSRMSVG 408
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
+G+ G ET+Y+G+ G ++A+IF GV +YQ+L HM +D+
Sbjct: 446 NGFESAGVETLYNGITGERIEAEIFIGVAYYQKLHHMTTDR 486
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/397 (31%), Positives = 175/397 (44%), Gaps = 57/397 (14%)
Query: 584 PEKGMGLYPG---LYLFTGPGRMLRPVMN--------------------------LAAGN 614
PE + YP +Y+FT PGR RP++ +AAG
Sbjct: 37 PEMNITHYPENHEIYIFTDPGRARRPLIIVEDGEPLLTEEHLEKLETGEMSWDDLIAAGI 96
Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
IE++ E+ I ++ E TH E+ + L A +IP + N SPRN +
Sbjct: 97 IEYLDAEEEENAYIAMSPDEINDE-HTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAG 155
Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
M KQ +G N+ + + + L P P + D D P G N +VAV+SY G
Sbjct: 156 MTKQALGLYASNYDLRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEG 215
Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG--VDGSMMQAQIFF 792
Y+MEDA+ILNK+S ERG A F+S Y E Y G D + +
Sbjct: 216 YNMEDALILNKASLERGLARSSFFRS----------YEAAERRYPGGQEDRFEIPEKGVR 265
Query: 793 GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES 852
G RH+ D + + L K P L E D + +
Sbjct: 266 GYRSESDYRHLDEDGIINPE--AEVSSGDVLIGKTSPPRF------LEEIDEFGTVAERR 317
Query: 853 ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
VT R+ E+ V+ V ++ EG + A I R QR P +GDKFASR GQK
Sbjct: 318 RETSVTVRHG--EKGIVDAVLLTE-TVEGSRL----AKIRVREQRQPELGDKFASRHGQK 370
Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
G+ + ED+PFT+ G+VPD++ NPH PSRM++G
Sbjct: 371 GVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVG 407
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
+G+ G E++Y+G+ G ++A+IF GV +YQ+L HM +DK
Sbjct: 445 NGFETAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDK 485
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 148/314 (47%), Gaps = 33/314 (10%)
Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQ 699
TTH E+ L +A LIP P NQSPRN YQC MGKQ +G N + LY L
Sbjct: 1134 TTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLV 1193
Query: 700 TPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK 759
P + D L+ P G NA VAV+SY+GYD+EDA+++NK+S +RGF + K
Sbjct: 1194 HTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLK 1253
Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA 819
++ +G +T R+ + + Y D
Sbjct: 1254 KQVTSIKK----HGNDT--------------------SDRIFPPTPNDLRQPKYGLLDSD 1289
Query: 820 NKALEDKLGPDGLVYVG--AKLNERD--PMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
A +L G + V + LN D P +S + Y ++ V ++
Sbjct: 1290 GIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLT 1349
Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
SG E + + R R P +GDKF+SR GQKG+C + ED+PF+D G+ PDI
Sbjct: 1350 SGDDEQLLIK-----MLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDI 1404
Query: 936 VFNPHGFPSRMTIG 949
+ NPHGFPSRMTIG
Sbjct: 1405 IMNPHGFPSRMTIG 1418
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 166/403 (41%), Gaps = 51/403 (12%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P R YS P V + ++ + + +G +PIML+S C L TP Q+
Sbjct: 112 PQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAAL 171
Query: 191 GEHPDEWGGYFIVGGHEKLV---------RLLIN-NRRNHPIAIKRNAWKNR----GLLF 236
GE P + GGYFIV G EK++ R++I + + P A ++ R G+
Sbjct: 172 GECPMDPGGYFIVRGQEKVILNHEQLSKNRIIIEMDSKGLPSASVTSSTHERKSRTGVTL 231
Query: 237 SDLGVYIRSVKRDESATNNVL---HFVTNGSARFMFSHRKSMCLLGMMQSLHE---EGIH 290
+ +Y++ E ++ V + L + SL E G+H
Sbjct: 232 KNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEMAQLVGSDDVFLNAITPSLEECQKCGVH 291
Query: 291 TQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLS 343
T + + G ++F+ + E D +L +L H+ ++ K + LS
Sbjct: 292 TAAQALDYLGSRIKVFRRPYGVQNKKTKSEEARD-ILAGVVLNHVPVRRYNFRLKVIYLS 350
Query: 344 HMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK---------EKSGTSAVLKE 394
M ++ + LD +D + I G L L + +KS A+ K
Sbjct: 351 LMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKA 410
Query: 395 S-----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
+ D+ R +I + T+ +++G + + M+ SG +++ ++R+ Y+S
Sbjct: 411 NRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFR----MERSG---VSQVLSRLSYIS 463
Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPC 490
+ R S F++ R + PR L+ WG +CP TP+G C
Sbjct: 464 CMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
+ G++Y G + + SGV G + IFFG + YQ+L+HMV DK +
Sbjct: 1454 ISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHAR 1500
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 157/339 (46%), Gaps = 48/339 (14%)
Query: 626 MDICITMKEAYPGIT-THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPC 684
+D+ +K + T TH E+ + L A++IP PD NQSPRN YQ MGKQ MG
Sbjct: 722 VDLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFL 781
Query: 685 LNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILN 744
N+ ++ L P P + L P G NAIVA+ Y+GY+ ED+MI+N
Sbjct: 782 TNYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMN 841
Query: 745 KSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMV 804
+SS +RG F+S +++ E Y TET + + R++H
Sbjct: 842 QSSIDRGLFRSLFFRS-YMDQEKKYGMSITETFEKPQRTNTL------------RMKH-- 886
Query: 805 SDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYV 857
DKL DGL+ G +++ D P+ +E R
Sbjct: 887 -----------------GTYDKLDEDGLIAPGVRVSGEDIIIGKTTPIAPDEEELGQRTA 929
Query: 858 TCRYSGKEEMCVEVVRMSSGFTEGGSVTPN---CAYIGYRIQ--RNPTVGDKFASRAGQK 912
Y K + + +G + +T N ++ R++ + P +GDKFASR GQK
Sbjct: 930 ---YHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQK 986
Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
G + + ED+PFT G+VPD++ NPH PSRMT+ L
Sbjct: 987 GTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHL 1025
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 121/505 (23%), Positives = 199/505 (39%), Gaps = 96/505 (19%)
Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN----- 219
+GR+PIML+SK C+L + T + L + E P + GGYFI+ G EK+ LI R+
Sbjct: 165 IGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV---LIAQERSAGNIV 221
Query: 220 --------HPI---AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV------------ 256
PI A R+A + S L V + R+ S+ +
Sbjct: 222 QVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYG--RESSSARTIKATLPYIKQDIP 279
Query: 257 -------LHFVTNGSARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQI 302
L + +G + H +C +L M++ E+G Q D + I
Sbjct: 280 IVIIFRALGIIPDGE---ILEH---ICYDVNDWQMLEMLKPCVEDGFVIQ-DRETALDFI 332
Query: 303 FKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTCKLFHVVQGMVQ 358
+ ++ ++ +L LPH+ K L +M +L
Sbjct: 333 GRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKD 392
Query: 359 LDSEDSIMLQEIMTGGSLYLQLLK-----------KEKSGTSAVLKESDIYAAFRASSIE 407
D D + + G L QL K + T + ++ A A +I
Sbjct: 393 QDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTIT 452
Query: 408 SAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRS 465
S + LATGN K + S +++ +NR Y S + R + ++ +
Sbjct: 453 SGLKYALATGNWGEQKKAM------SSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKL 506
Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSVLVSLG 522
++PRQL WG +CP TP+G CGL+ +L+ IS + +P I + L G
Sbjct: 507 AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMP------IITFLSEWG 560
Query: 523 MLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLK 582
M PL + A V ++G V + + + L+ LR L+ G+ P+ I ++
Sbjct: 561 MEPLEDYVPHQSPDATRVFVNG--VWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIR 618
Query: 583 RPEKGMGLYPGLYLFTGPGRMLRPV 607
E L +FT GR+ RP+
Sbjct: 619 EQE--------LKIFTDAGRVYRPL 635
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
E GY G E MY+G G + AQIFFG +YQRLRHMV DK +
Sbjct: 1060 EHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1105
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 150/326 (46%), Gaps = 55/326 (16%)
Query: 640 TTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN--WRYQGVGKLYR 697
TH E+ L A + P P+ N +PR MGKQ++G P N WR G L
Sbjct: 122 NTHVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGHL-- 179
Query: 698 LQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCI 757
L P P R H + L D P G N +VAV+SY GY+MEDA ++NK+S ERG
Sbjct: 180 LHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTF 239
Query: 758 FKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRD 817
F+S Y E Y G G + DK++ + R
Sbjct: 240 FRS----------YESFEKRYPG--GQL--------------------DKFEVPEKGVRG 267
Query: 818 PANKALEDKLGPDGLVYVGAKLNERD--------PMYSYWKE------SENRYVTCRYSG 863
+ LG DGL+ + +++ D P + +E S+ R +
Sbjct: 268 YRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRH 327
Query: 864 KEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAED 923
EE V++V +S T+ G+ + R R P GDKFASR GQKG+ + P ED
Sbjct: 328 GEEGVVDLVILSE--TKEGN---RLGKVRVRDLRVPEFGDKFASRHGQKGVIGLVVPQED 382
Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIG 949
LPFT+ G++PD++ NPH PSRMTIG
Sbjct: 383 LPFTEDGVIPDLIINPHAIPSRMTIG 408
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
G+ + G ETMY G G ++ +IF GV +YQ+L H+V+ K +
Sbjct: 447 GFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHAR 490
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 156 bits (394), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 149/323 (46%), Gaps = 47/323 (14%)
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
TH E+ + L A++IP PD NQSPRN YQ MGKQ MG N+ + L
Sbjct: 739 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 798
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P P + L P G NAIVA+ Y+GY+ ED+MI+N+SS +RG F+S
Sbjct: 799 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 858
Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
+++ E Y TET + + R++H
Sbjct: 859 -YMDQEKKYGMSITETFEKPQRTNTL------------RMKH------------------ 887
Query: 821 KALEDKLGPDGLVYVGAKLNERD-------PMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
DKL DGL+ G +++ D P+ +E R Y K + +
Sbjct: 888 -GTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTA---YHSKRDASTPLRS 943
Query: 874 MSSGFTEGGSVTPN---CAYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTD 928
+G + VT N ++ R++ + P +GDKFASR GQKG + + ED+PFT
Sbjct: 944 TENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTA 1003
Query: 929 SGLVPDIVFNPHGFPSRMTIGFL 951
G+VPD++ NPH PSRMT+ L
Sbjct: 1004 EGIVPDLIINPHAIPSRMTVAHL 1026
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 125/516 (24%), Positives = 205/516 (39%), Gaps = 99/516 (19%)
Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLL 213
D ++G F +GR+PIML+SK C+L T + L + E P + GGYFI+ G EK+ L
Sbjct: 159 DSESGKVF---IGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKV---L 212
Query: 214 INNRRN-------------HPI---AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNV- 256
I R+ PI A R+A + S L V + R+ S+ +
Sbjct: 213 IAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYG--REGSSARTIK 270
Query: 257 ------------------LHFVTNGSARFMFSHRKSMC-------LLGMMQSLHEEGIHT 291
L + +G + H +C +L M++ E+G
Sbjct: 271 ATLPYIKQDIPIVIIFRALGIIPDGE---ILEH---ICYDVNDWQMLEMLKPCVEDGFVI 324
Query: 292 QHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTC 347
Q D + I + ++ ++ +L LPH+ K L +M
Sbjct: 325 Q-DRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 383
Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-KSGTSAVLK----------ESD 396
+L D D + + G L QL K K T + + + +
Sbjct: 384 RLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFN 443
Query: 397 IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
+ A A +I S + LATGN K + S +++ +NR Y S + R
Sbjct: 444 MKLAINAKTITSGLKYALATGNWGEQKKAM------SSRAGVSQVLNRYTYSSTLSHLRR 497
Query: 457 GS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVL 511
+ ++ + ++PRQL WG +CP TP+G CGL+ +L+ IS + +P
Sbjct: 498 TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMP---- 553
Query: 512 AQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK 571
I + L GM PL + A V ++G V + + + L+ LR L+ G+
Sbjct: 554 --IITFLSEWGMEPLEDYVPHQSPDATRVFVNG--VWHGVHRNPARLMETLRTLRRKGDI 609
Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
P+ I ++ E L +FT GR+ RP+
Sbjct: 610 NPEVSMIRDIREKE--------LKIFTDAGRVYRPL 637
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
E GY G E MY+G G + AQIFFG +YQRLRHMV DK +
Sbjct: 1061 EHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1106
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 177/394 (44%), Gaps = 70/394 (17%)
Query: 594 LYLFTGPGRMLRPVMNLAAG-------NIEWIGTFEQVFMDI----------CITMKEAY 636
+++ T GR++RP++ + G +IE + E F D+ + AY
Sbjct: 55 IHINTDAGRIVRPLIVVENGKPKLTKEHIEKLKKGEITFSDLVKEGVIEYLDAEEEENAY 114
Query: 637 PGIT--------THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
++ TH E+ L A + P P+ N +PR MGKQ++G P N +
Sbjct: 115 IALSEEELTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIK 174
Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
++ + + L P P R H + L D P G N +VA++SY GY+MEDA++ NKS+
Sbjct: 175 WRLDTRGHYLHYPQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAI 234
Query: 749 ERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW 808
+RG F++ Y E Y G G M D++
Sbjct: 235 DRGLGRSTFFRT----------YDACERRYPG--GQM--------------------DRF 262
Query: 809 QTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRY-----VTCRYSG 863
+ D R ++ L DG+V V + + D + K S R+ +T +
Sbjct: 263 EIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVG--KTSPPRFLEEHEITIQVKP 320
Query: 864 KEEMCVEVVRM-SSGFTEGGSVTPN-----CAYIGYRIQRNPTVGDKFASRAGQKGICSV 917
+ VVR G+ + +T + R R P +GDKFASR GQKG+ +
Sbjct: 321 QRRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGL 380
Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
P EDLPFT+SG+VPDI+ NPH PSRMT+G L
Sbjct: 381 TVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQL 414
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
G+ ++G E MY G G + +I+ G+ +YQ+L H+V+ K +
Sbjct: 451 GFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHAR 494
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 146/319 (45%), Gaps = 41/319 (12%)
Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
H E+ + L A++IP PD NQSPRN YQ MGKQ MG N+ + L P
Sbjct: 749 HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYP 808
Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSM 761
P + L P G NAIVA+ Y+GY+ ED+MI+N+SS +RG F++
Sbjct: 809 QKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRT- 867
Query: 762 FIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK 821
+++LE ET + RL+H
Sbjct: 868 YMDLEKRQGMKALETFEKPSRSDTL------------RLKH------------------- 896
Query: 822 ALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSG 877
+KL DGL+ G +++ D + ++E +Y K + + SG
Sbjct: 897 GTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESG 956
Query: 878 FTEGGSVTPN---CAYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
+ +T N ++ R++ + P +GDKFASR GQKG V + ED+PFT G+V
Sbjct: 957 IVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIV 1016
Query: 933 PDIVFNPHGFPSRMTIGFL 951
PD++ NPH PSRMT+ L
Sbjct: 1017 PDLIINPHAIPSRMTVAHL 1035
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 140/575 (24%), Positives = 227/575 (39%), Gaps = 106/575 (18%)
Query: 109 KAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVA---WSWDGKAGGTFTKE- 164
K IS+P G H +P EAR YS P V + D AG E
Sbjct: 87 KIYISKPTQTEGDGTTH--PMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEHELEW 144
Query: 165 ---------------VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
+G+VPIML+SK C LR+L + E E P + GGYF++ G EK+
Sbjct: 145 IEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGSEKV 204
Query: 210 VRLLINNRRNHP----------------IAIKRNAWKNRGLLFSDLGVYIRSVKRDESAT 253
LI R+ +A R+A + L S + I+ R+E +T
Sbjct: 205 ---LIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSM--QIKLYGREEKST 259
Query: 254 NN---------------------VLHFVTNGSA-RFMFSHRKSMCLLGMMQSLHEEG--I 289
+N L V +G + +L M++ EEG I
Sbjct: 260 SNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEEGFVI 319
Query: 290 HTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--DDYWD--KFLCLSHM 345
+ + F G+ + ++ ++ +L +LP++ D+ ++ K L +M
Sbjct: 320 QEREVALDFIGR----RGALGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYM 375
Query: 346 TCKLFHVVQGMVQLDSEDSIMLQEIMTGG----SLYLQLLKKEKSGTSAVLK---ESD-- 396
+L + D D + + G SL+ L KK ++ E+D
Sbjct: 376 VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVENDKV 435
Query: 397 --IYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAV 454
+ A ++ +I + LATGN K + S +++ +NR Y S +
Sbjct: 436 FNLTLAVKSQTITDGLRYSLATGNWGEQKKAM------SSRAGVSQVLNRYTYSSTLSHL 489
Query: 455 HRGS--YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
R + ++ + ++PRQL WG +CP TP+G CGL+ +L+ IS PS+
Sbjct: 490 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE--- 546
Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
I L GM PL + S + V ++G VG + LV +R L+ G+
Sbjct: 547 PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVG--THREPAHLVDTMRSLRRRGDIS 604
Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
P+ I ++ E +FT GR+ RP+
Sbjct: 605 PEVSIIRDIREKE--------FKIFTDAGRVYRPL 631
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
E GY G E MY G G + AQ+FFG +YQRLRHMV DK +
Sbjct: 1070 EHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHAR 1115
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 153/320 (47%), Gaps = 41/320 (12%)
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
TH E+ L LA++IP PD NQSPRN YQ MGKQ MG N++ + L
Sbjct: 728 THCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYY 787
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P P + L P G NAIVA++ Y+GY+ ED++I+N++S +RG +F+S
Sbjct: 788 PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRG-----LFRS 842
Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
+F Y Y + G+ ++M+ ++R + + + Y
Sbjct: 843 IF------YRTYTDQEKKIGM--TVME--------EFERPVRSTTLRMKHGTY------- 879
Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSS 876
DKL DGL+ G +++ D + + E + K ++ + S
Sbjct: 880 ----DKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTES 935
Query: 877 GFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGL 931
G + VT N + + R R P +GDKFASR GQKG + + ED+PF+ G+
Sbjct: 936 GIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGI 995
Query: 932 VPDIVFNPHGFPSRMTIGFL 951
VPDI+ NPH PSRMT+ L
Sbjct: 996 VPDIIINPHAIPSRMTVAHL 1015
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 134/620 (21%), Positives = 232/620 (37%), Gaps = 104/620 (16%)
Query: 67 TLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYG----------KTLKLNIVKAAISEPK 116
+L + SFD + + V+D + + + Y + ++N + +S P
Sbjct: 29 SLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPT 88
Query: 117 VPAGPVGIHFNKYYPTEARQTRSVYSGPF------NVTVAWSWDGKAGGTFTKE------ 164
+ +P EAR YS P V VA + G
Sbjct: 89 MTEADGST--TTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEEDEE 146
Query: 165 -----VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
+G++PIML+S C L ++ ++L + E P + GGYFI+ G EK++ + N
Sbjct: 147 PSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIAQERSAAN 206
Query: 220 ----------HPIAIK---RNAWKNRGLLFSDLGVYI--RSVKRDESATNNVLHFVTNG- 263
PIA R+A + L S + + + R+ + L ++ +
Sbjct: 207 IVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRATLPYIRSDI 266
Query: 264 ------------SARFMFSHRKSMC-------LLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
R + H +C +L MM+ EE Q D + I K
Sbjct: 267 PIVIVFRALGVVPDRDILEH---ICYDPNDFQMLEMMKPCIEEAFVIQ-DKDIALDYIGK 322
Query: 305 EKLQYDLRHLNEVEICDYMLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQLD 360
+ + +L +LPH+ K L +M ++ + D
Sbjct: 323 RGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPD 382
Query: 361 SEDSIMLQEIMTGG----SLYLQLLKKEKSGTSAVL-------KESDIYAAFRASSIESA 409
D + + G SL+ L +K + +E ++ A +++ I +
Sbjct: 383 DRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNG 442
Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS--YFQEMRSSE 467
+ LATGN K S + + S + +NR + S + R + ++ + ++
Sbjct: 443 LRYSLATGNWGDQKRSMVNRVGVS------QVLNRYTFASTLSHLRRTNTPIGRDGKLAK 496
Query: 468 PRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLT 527
PRQL WG +CP TP+G CGL+ +L+ +S PS A I L G+ L
Sbjct: 497 PRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPS---APIIEFLEEWGLETLE 553
Query: 528 PVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKG 587
S A V ++G +G D L LR L+ ++ S E+ ++ +
Sbjct: 554 DYNPSASPNATKVFVNGVWLGVHRD--PAHLTETLRSLR---RRLDISAEVSIVRDIRE- 607
Query: 588 MGLYPGLYLFTGPGRMLRPV 607
L LFT GR+ RP+
Sbjct: 608 ----KELRLFTDAGRICRPL 623
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
G+ G E MY G G + AQ+F G +YQRL+H+V DK +
Sbjct: 1052 GFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHAR 1095
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 223/963 (23%), Positives = 377/963 (39%), Gaps = 198/963 (20%)
Query: 127 NKYYPTEARQTRSVYSGPFNVTVA-WS--WDGKAGGTFTKEVG---------RVPIMLKS 174
N YP +A + + YS + TV W D T T+ +G ++PIM+ S
Sbjct: 93 NLLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPEKDVPIAKIPIMVLS 152
Query: 175 KRCHLRNLTPAQLIERGEHPD-EWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRG 233
K C+L L P G+H + GGYFIV G EK+V + + P+ +
Sbjct: 153 KYCNL-TLRPDIA---GKHCKYDAGGYFIVNGSEKVVLSVESMIPRKPVVFTQR--DQNS 206
Query: 234 LLF-------------SDLGVYIRSVKRDESATNNVLHFVTNGSARFM------------ 268
LL+ + ++ +KRD S ++ HF F+
Sbjct: 207 LLYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIRALGIETDEDIV 266
Query: 269 ---FSHRKSMCLLGM----MQSLHEEGIHTQHDSKVFFGQIFKEKLQYD----LRHLNEV 317
+K LL + M S + + + ++ QI K D ++
Sbjct: 267 DSILDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFTDTNPEVKAEQRR 326
Query: 318 EICDYMLTNCILPHL-----DDYWDKFLCLSHMTCKLFH-----VVQGMVQL------DS 361
D ++T +LPH+ D DK + +H C + H ++G ++ D
Sbjct: 327 RYLDKIMTQFVLPHITSGTGDPEIDK-IYKAHYICYMIHKLLKCYLRGAREVEEYRGCDD 385
Query: 362 EDSIMLQEI-MTG---GSLYLQLLKKEKSGTSAVL--------KESDIYAAFRASSIESA 409
DS++ + I +TG G L+ Q K + + + K +I + +SIE
Sbjct: 386 RDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPPNIIPHIKPNSIEQG 445
Query: 410 MTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSY-FQEMRSSEP 468
+ L+TGN + G M +N + +S+ R V + M+ + P
Sbjct: 446 LRQALSTGNFGS--------QSRKGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSP 497
Query: 469 RQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSL--GMLPL 526
R L +G +CP+ +P+G P L N + E I + +QIP + L + L
Sbjct: 498 RHLHNTQYGSMCPLESPEGKP---KTGLVKNMAMMEGITINMNSQIPIIESYLIGKITTL 554
Query: 527 TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEK 586
+ Q + V L+G +G + I + LR ++ GE ++ K E
Sbjct: 555 ESANKKRLHQYVKVFLNGNWLGVTRNII--KIHNDLRAMRFRGELSRMVGLVLNYKTAE- 611
Query: 587 GMGLYPGLYLFTGPGRMLRPVMNLAAGNI--------------EWIGTFEQVF------- 625
+++T GR++RP + + + E++ F +V
Sbjct: 612 -------FHIYTDGGRLIRPYLTVTDNKLNFKPEMLDEVNSWEEFLAKFPEVIEYVDKEE 664
Query: 626 -MDICITMKEAY----------PGITTHRELSKTD----------------------FLS 652
+I + + Y I + +L+K + L
Sbjct: 665 EQNIMLAVFPQYIQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIHPCMILG 724
Query: 653 NLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYD 712
+++ IP PD NQSPR ++Q +Q MG ++R + Y L P P
Sbjct: 725 LISSNIPFPDHNQSPRGIFQYNQARQAMGLYISDYR-ERTDISYILYHPQIPLVTSRASK 783
Query: 713 TLDMDNFPMGTNAIVAVISYTGY-DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
FP G N+IVA+ SYTG + ED++++N S+ ++G+ K ++E+
Sbjct: 784 YTGTHIFPAGENSIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKK-YMEIIKKNPA 842
Query: 772 YGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDG 831
+++ D + + LR DK + Y A + + DG
Sbjct: 843 SSQTSIFMKPDRNKV-----------DNLRDANYDKLSEEGY--------AKVETVIRDG 883
Query: 832 LVYVGA---KLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNC 888
V +G K R+ Y K++ + Y + +++ EV + G+
Sbjct: 884 DVVIGVVNPKPTAREDEKQY-KDASSIYKSLIPGAVDKVITEV--NNDGYP--------I 932
Query: 889 AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
+ R +R P VGDKF+SRAGQKG K D+ F+ SGL+PDI+ NP+ P RMTI
Sbjct: 933 IKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTI 992
Query: 949 GFL 951
G L
Sbjct: 993 GQL 995
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
+ +GY +G ETMY+G++G + +IF G +YQRL+ MV DK ++ +
Sbjct: 1029 VAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAP 1088
Query: 825 DKLGPDGLVYVGAKLNERDPMYSY 848
+ DG + +G ++ ERD + ++
Sbjct: 1089 EGRSRDGGLRIGFEM-ERDALCAH 1111
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 208/851 (24%), Positives = 344/851 (40%), Gaps = 127/851 (14%)
Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLIN 215
+G +P+M+KS C + ++G+ + GGYF++ G EK+ RL I+
Sbjct: 173 IGSIPVMVKSILCKTSE-KGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWIS 231
Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMF------ 269
N ++ + +NR ++ KR E V T +F
Sbjct: 232 NS-PWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLT-VYFLSTEIPVWLLFFALGVS 289
Query: 270 SHRKSMCLL---GMMQSLHEEGIHTQH--DSKVFFGQIFKEKLQYDLRHLNE-----VEI 319
S +++M L+ G S+ I + H D+ + L Y + + E
Sbjct: 290 SDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTYVEQQIKSTKFPPAES 349
Query: 320 CDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLY-- 377
D L + P L K L +M L + G + ++ DS + I G L
Sbjct: 350 VDECLHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLER 409
Query: 378 ---LQLLKKEKSGTSAVLKE-------SDIYAAFRASSIESAMTNFLATGNVSAGKNSTL 427
+ L + T A+ K I AS I + ++ +TG A +
Sbjct: 410 EIRVHLAHARRKMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRAFSTG---AWSHPFR 466
Query: 428 QLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDG 487
++ + SG V N ++ + R R + + R WG +C + TPDG
Sbjct: 467 KMERVSGVVANLGRANPLQTLIDLRRT-RQQVLYTGKVGDARYPHPSHWGRVCFLSTPDG 525
Query: 488 TPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
CGL+ +++ + + ++ L + L + GM L + V+L+G V
Sbjct: 526 ENCGLVKNMS----LLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWV 581
Query: 548 GYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
G D + S V +L+ + E +P+ +EI K + + +FT GR+LRP+
Sbjct: 582 GLCAD--SESFVAELKSRRRQSE-LPREMEIKRDKDDNE-------VRIFTDAGRLLRPL 631
Query: 608 MNLAAGNIEWIGT-------FEQVF------------MDICIT-------MKEAYPGITT 641
L N++ + F+ + + C T +KE P I T
Sbjct: 632 --LVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKE--PKIYT 687
Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG-KQTMGTPCLNWRYQGVGKLYRLQT 700
H EL + L ++P + + R +YQ Q +Q +G N + +L
Sbjct: 688 HCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFY 747
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P P F+ + + L + G NAIVAV + GY+ ED++++NK+S ERG +F+S
Sbjct: 748 PQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERG-----MFRS 802
Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
I Y E VD + + +++ +V FG+ +
Sbjct: 803 EQIR------SYKAE-----VDAKDSEKR--------KKMDELVQ--------FGKTHSK 835
Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
D L DG ++GA ++ D + ES + + + E V+ V +SS E
Sbjct: 836 IGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADH-SIKLKHTERGIVQKVVLSSN-DE 893
Query: 881 GGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPH 940
G N A + R R+P +GDKF+S GQKG+ ++ PFT G+VPDIV NPH
Sbjct: 894 G----KNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPH 949
Query: 941 GFPSRMTIGFL 951
FPSR T G L
Sbjct: 950 AFPSRQTPGQL 960
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
+G++ +G E +Y+G G MM++ IF G YQRL HM DK
Sbjct: 1007 AGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDK 1047
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 146 bits (368), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 164/358 (45%), Gaps = 55/358 (15%)
Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGIT-THRELSKTDFLSNLANLIPMPDCNQSPR 668
+ AG +E+I E+ DI + ++E TH E+ A +IP P+ N SPR
Sbjct: 95 VEAGKVEFIDAEEE--EDILVGVEEEELTTDHTHLEIDPQLIFGIGAGMIPYPEHNASPR 152
Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
M KQ++G P N+R + + + L P + + D+ P G N +VA
Sbjct: 153 ITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKAMVNTQTTEQIGYDDRPAGQNFVVA 212
Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
V+SY G+++EDA+++NK S ER + F++ Y G E Y G G +
Sbjct: 213 VMSYEGFNIEDALVMNKGSVERALSRSHFFRT----------YEGEERRYPG--GQEDRF 260
Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS- 847
+I V R G D A L+D DGLV K+++ +
Sbjct: 261 EIPGDDVRGAR---------------GED-AYTHLDD----DGLVNPETKVDDSSVLLGK 300
Query: 848 -----YWKESEN---------RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
+ +E E+ R + E+ V+ V + G E GS A +
Sbjct: 301 TSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEG--EDGS---KLAKVSV 355
Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
R +R P +GDKFASR GQKG+ P ED+PFT G+VPD+V NPH PSRMT+G +
Sbjct: 356 RDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHV 413
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
+ G+ G E MYSGV G ++A+IF G + Y +L HMVS+K +
Sbjct: 448 DRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHKLYHMVSNKLHAR 493
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 146 bits (368), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 111/358 (31%), Positives = 164/358 (45%), Gaps = 55/358 (15%)
Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYPGIT-THRELSKTDFLSNLANLIPMPDCNQSPR 668
+ AG +E+I E+ DI + ++E TH E+ A +IP P+ N SPR
Sbjct: 95 VEAGKVEFIDAEEE--EDILVGVEEEELTTDHTHLEIDPQLIFGIGAGMIPYPEHNASPR 152
Query: 669 NMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVA 728
M KQ++G P N+R + + + L P + + D+ P G N +VA
Sbjct: 153 ITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKAMVNTQTTEQIGYDDRPAGQNFVVA 212
Query: 729 VISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
V+SY G+++EDA+++NK S ER + F++ Y G E Y G G +
Sbjct: 213 VMSYEGFNIEDALVMNKGSVERALSRSHFFRT----------YEGEERRYPG--GQEDRF 260
Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYS- 847
+I V R G D A L+D DGLV K+++ +
Sbjct: 261 EIPGDDVRGAR---------------GED-AYTHLDD----DGLVNPETKVDDSSVLLGK 300
Query: 848 -----YWKESEN---------RYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGY 893
+ +E E+ R + E+ V+ V + G E GS A +
Sbjct: 301 TSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEG--EDGS---KLAKVSV 355
Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
R +R P +GDKFASR GQKG+ P ED+PFT G+VPD+V NPH PSRMT+G +
Sbjct: 356 RDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHV 413
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
+ G+ G E MYSGV G ++A+IF G + Y +L HMVS+K +
Sbjct: 448 DRGFKSSGKEVMYSGVSGEKIEAEIFVGTIFYHKLYHMVSNKLHAR 493
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 144/320 (45%), Gaps = 41/320 (12%)
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
TH E+ + L A++IP PD NQSPRN YQ MGKQ MG N+ + L
Sbjct: 737 THCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 796
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P P + L P G NAIVA+ Y+GY+ ED+MI+N+SS + G F+S
Sbjct: 797 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRS 856
Query: 761 MFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN 820
+++ E TE+ + + R++H
Sbjct: 857 -YMDQEKRIGMSITESFEKPHRTNTL------------RMKH------------------ 885
Query: 821 KALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSS 876
+KL DGL+ G +++ D + ++E + K + + +
Sbjct: 886 -GTYEKLDDDGLIAPGVRVSGDDIIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTEN 944
Query: 877 GFTEGGSVTPNCAYIGY-----RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGL 931
G + +T N + + R + P +GDKFASR GQKG + + ED+PFT G+
Sbjct: 945 GIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGV 1004
Query: 932 VPDIVFNPHGFPSRMTIGFL 951
VPD++ NPH PSRMT+ L
Sbjct: 1005 VPDLIINPHAIPSRMTVAHL 1024
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 127/518 (24%), Positives = 212/518 (40%), Gaps = 77/518 (14%)
Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
+ + S D + G F +GRVPIML+SK C L +L+ + L E P + GGYFI+
Sbjct: 145 YEIIQEESEDTEEGKIF---IGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIIN 201
Query: 205 GHEKLV--------RLLINNRRNHP-----IAIKRNAWKNRGLLFSDLGVYIR----SVK 247
G EK++ ++ +++ P IA R+A + S L V + S
Sbjct: 202 GSEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTS 261
Query: 248 RDESAT-------------NNVLHFVTNGSA-RFMFSHRKSMCLLGMMQSLHEEGIHTQH 293
R AT L + +G + + +L M++ EEG Q
Sbjct: 262 RTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGFVIQ- 320
Query: 294 DSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWD----KFLCLSHMTCKL 349
D + I + ++ ++ +L LPH+ K L +M +L
Sbjct: 321 DRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRL 380
Query: 350 FHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-KSGTSAVL----------KESDIY 398
D D + + G L QL K + T +L K+ ++
Sbjct: 381 LLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFNLK 440
Query: 399 AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
A +A++I + + LATGN K + S +++ +NR Y S + R +
Sbjct: 441 LAVKATTITAGLKYALATGNWGEQKKAM------SSRAGVSQVLNRYTYSSTLSHLRRTN 494
Query: 459 --YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQ 513
++ + ++PRQL WG +CP TP+G CGL+ +L+ IS + +P
Sbjct: 495 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVP------ 548
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIP 573
I + L GM PL + A V ++G V + + + LV +R L+ G+ I
Sbjct: 549 IITFLNEWGMEPLEDYVPHQSPDATRVFVNG--VWHGIHRNPARLVDTIRKLRRKGD-IT 605
Query: 574 KSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLA 611
+ IV R ++ L +FT GR+ RP+ +A
Sbjct: 606 AEVSIVRDIREKE-------LKIFTDAGRVYRPLFVVA 636
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
E GY G E MY+G G + AQIFFG +YQRLRHMV DK +
Sbjct: 1059 EHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHAR 1104
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 155/346 (44%), Gaps = 38/346 (10%)
Query: 613 GNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQ 672
G IE++ E+ + + E P TH EL + + IP + N SPRN
Sbjct: 95 GLIEYLDAEEEENAYVAVYEHELTPE-HTHLELDPSLIVGICTGSIPYAEHNASPRNTMG 153
Query: 673 CQMGKQTMGTPCLN--WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
M KQ++G P N WR G L +Q P P + D P G N +VAV+
Sbjct: 154 AAMIKQSLGIPYSNLAWRTDTRGHL--MQHPQVPIVTTDTQVEIKFDERPAGQNFVVAVL 211
Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG--VDGSMMQA 788
SY GY++EDA+I+NK S ERG +++ Y E Y G D +
Sbjct: 212 SYEGYNIEDALIMNKGSVERGLGRSFFYRT----------YESEEMRYPGGQEDKFEIPG 261
Query: 789 QIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNER---DPM 845
G + H+ D E ++GPD V +G R +P
Sbjct: 262 ADISGFRGAEAYAHLDEDGLIFP------------ETEVGPDD-VLIGRTSPPRFLEEPT 308
Query: 846 YSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKF 905
+ R + E+ V+ V + +EGGS A + R R P +GDKF
Sbjct: 309 ELGISPQKRRETSVTMRSNEKGVVDAVFLMQ--SEGGS---KLAKVRVRDLRIPELGDKF 363
Query: 906 ASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
ASR GQKG+ + P ED+PFT+SG+VPD++ NPH PSRMT+G +
Sbjct: 364 ASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGHV 409
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
G+++ G E MY G+ G IF GV++YQ+L HMVS K +
Sbjct: 446 GFSHTGKEVMYDGITGRRYLVDIFVGVIYYQKLYHMVSSKIHAR 489
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 205/865 (23%), Positives = 341/865 (39%), Gaps = 155/865 (17%)
Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV---------RLLIN 215
+G +P+M+KS C + ++G + GGYF++ G EK+ RL I+
Sbjct: 119 IGSIPVMVKSVLCKTSE-KGKENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWIS 177
Query: 216 NRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATN--------NVLHFVTNGSARF 267
N ++ + +NR +I + +E A + V T
Sbjct: 178 NS-PWTVSFRSETKRNR---------FIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWL 227
Query: 268 MF------SHRKSMCLLG-----------MMQSLHE-----EGIHTQHDSKVFFGQIFKE 305
+F S +++M L+ ++ S+HE E +++ + K
Sbjct: 228 LFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKS 287
Query: 306 KLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSI 365
E D L + P L K L +M L G + ++ DS
Sbjct: 288 T------KFPPAESVDDCLRLYLFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSF 341
Query: 366 MLQEIMTGGSLY-----LQLLKKEKSGTSAVLKE-------SDIYAAFRASSIESAMTNF 413
+ I G L + L + T A+ K+ I AS I + +
Sbjct: 342 RNKRIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDGDLKPIEHYLDASVITNGLNRA 401
Query: 414 LATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRT 473
+TG A + ++ + SG V N ++ + R R + + R
Sbjct: 402 FSTG---AWSHPFRKMERVSGVVANLGRANPLQTLIDLRRT-RQQVLYTGKVGDARHPHP 457
Query: 474 DAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI 533
WG +C + TPDG CGL+ +++ + + ++ L + +L + GM L +
Sbjct: 458 SHWGRVCFLSTPDGENCGLVKNMS----LLGLVSTQGLESVVEMLFTCGMEELMNDTSTP 513
Query: 534 PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPG 593
V+L+G VG D + S V +L+ + E +P +EI K +
Sbjct: 514 LCGKHKVLLNGDWVGLCAD--SESFVGELKSRRRQSE-LPLEMEIKRDKDDNE------- 563
Query: 594 LYLFTGPGRMLRPVMNLAAGNIEWIGT-------FEQVFMDI------------CIT--- 631
+ +FT GR+LRP+ L N+ + F+ + C T
Sbjct: 564 VRIFTDAGRLLRPL--LVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEEEEDCTTAWG 621
Query: 632 ----MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM-GKQTMGTPCLN 686
+KE P TH EL + L ++P + + R +YQ Q +Q +G N
Sbjct: 622 IKQLLKE--PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTN 679
Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
+ +L P P F+ + + L+ + G NAIVAV + GY+ ED++++NK+
Sbjct: 680 PNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKA 739
Query: 747 SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSD 806
S ERG +F+S I Y E VD + + +++ +V
Sbjct: 740 SLERG-----MFRSEQIR------SYKAE-----VDTKDSEKR--------KKMDELVQ- 774
Query: 807 KWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEE 866
FG+ + D L DG ++GA ++ D + ES + + + E
Sbjct: 775 -------FGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADH-SIKLKHTER 826
Query: 867 MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPF 926
V+ V +SS EG N A + R R+P +GDKF+S GQKG+ ++ PF
Sbjct: 827 GIVQKVVLSSN-DEG----KNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPF 881
Query: 927 TDSGLVPDIVFNPHGFPSRMTIGFL 951
T G+VPDIV NPH FPSR T G L
Sbjct: 882 TIQGIVPDIVINPHAFPSRQTPGQL 906
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
+G++ +G E +Y+G G MM++ IF G YQRL HM +K
Sbjct: 954 AGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENK 994
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3
SV=1
Length = 1193
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/521 (23%), Positives = 225/521 (43%), Gaps = 82/521 (15%)
Query: 461 QEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQI----PS 516
+E ++++ RQ+ + F CP TP+G G+ + + ++S S V+ +I
Sbjct: 518 KEGKNTKIRQIHPSSIFFACPSETPEGQFVGITLNFSMLAEVSIRTSSVVIKEIIEASHQ 577
Query: 517 VLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSL 576
+ + L Q + + ++ + ++G I G L L+ +R LK+ + +
Sbjct: 578 AFKHVHEISLEENKQFLSKLSI-IFVNGGICG--LTSKPQQLLSDVRDLKL-KHCLKYDV 633
Query: 577 EIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAA----GNIEWIGTFEQVFMDICITM 632
V++ PE +++ + GR +RPV+NL + GN+ W +F+ + +
Sbjct: 634 SAVFI--PE-----LKEVHISSDAGRFIRPVLNLQSIKTNGNVMW-NSFQNCLENGHVVY 685
Query: 633 KEAY-----------------PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
K+AY P + E+ + L +A IP + QSPR YQ M
Sbjct: 686 KDAYEIEQSQIAINLQDLSRYPTVYDSMEIHASCMLGVMAAQIPFAEHTQSPRLCYQSSM 745
Query: 676 GKQTMGT-PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
KQ +G P + + ++ + P + ++FP G NA+VAV YTG
Sbjct: 746 AKQAIGNIPSHHVKSDNTTRV--MDYVQRPLVTTQIAEMNRFNDFPNGLNAMVAVAIYTG 803
Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
++ ED++ILNK+S +RG H +K++ + E GV+ +I V
Sbjct: 804 FNQEDSIILNKASIDRGMFHVVTYKTIIV-----------EERKIGVN-----EKICMPV 847
Query: 795 VHYQRLRH--MVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKES 852
+R+ + ++ D ++ YFG ++ V VG + + + +
Sbjct: 848 ASVRRMNNYSLLEDNPESP-YFGVVKVKSFVKR-----NDVLVGKVITKISKDGTRQETD 901
Query: 853 ENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRI----QRNPTVGDKFASR 908
+ V+ GK + ++R S + ++I Q+ P +GDKF S
Sbjct: 902 HSTIVSISEEGKVD---RIIRTSKK-----------GILMFKIVIAQQKRPEIGDKFCSA 947
Query: 909 AGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
QKG + D+PF + G +PD++ NPH PSRMTI
Sbjct: 948 MAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMTIN 988
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKW-------QTKDYFGRDP 818
E GYNY GTETM G +G ++A+IFFG V+Y RL HMVSDK Q + R P
Sbjct: 1033 ECGYNYNGTETMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQP 1092
Query: 819 AN 820
N
Sbjct: 1093 LN 1094
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 130 YPTEARQTRSVY-SGPFNVTVAWSWDGKAGGTFTK----EVGRVPIMLKSKRCHLRNLTP 184
YP EARQ Y S F + + + K ++ ++PIML+S C+L N TP
Sbjct: 118 YPAEARQKMITYDSFVFVDVLEYVLRDEEEILVNKHLRVQIAKIPIMLRSSTCNLYNCTP 177
Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
+ IE GE ++ GGYFI+ G+E R+LI RN
Sbjct: 178 QERIELGEGIEDPGGYFIINGNE---RVLIGQLRN 209
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 138/315 (43%), Gaps = 74/315 (23%)
Query: 654 LANLI-PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ-GVGKLYRLQTPASPFFRPVHY 711
LA L+ P +C Q R Y+ G+QT G C +W Y+ + + ++ P + + +
Sbjct: 781 LAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM-PLVKTIAH 839
Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
+ + P G N IVA + Y GY+ ED++I+++S +RG G ++ +ELES
Sbjct: 840 NYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIES 895
Query: 772 YG------TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
+G T+ + G + Y++L
Sbjct: 896 FGKPDPLITKNLKPGAN--------------YEKL------------------------- 916
Query: 826 KLGPDGLVYVGAKLNERDPMYSY------WKESENRYV--TCRYSGKEEMCVEVVRMSSG 877
DG V VG + + D + K+ N+Y+ + Y E V+ V G
Sbjct: 917 ---VDGFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHG 973
Query: 878 FTEGGSVTPNCAYIGY---RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
PN G R +RN +GDK +SR+G KGI ++ P D+PFT+ GL PD
Sbjct: 974 --------PNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPD 1025
Query: 935 IVFNPHGFPSRMTIG 949
++ NPH PSRMT G
Sbjct: 1026 LIVNPHSHPSRMTNG 1040
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-------------TLKLNIVKAAISEPKVP 118
+I SFD ++D G+ V+ + ++ + ++ N I P+
Sbjct: 43 NIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQFNFTDVNIERPQHR 102
Query: 119 AGPVGIHFNKYYPTEARQTRSVYSGPFNV------TVAWS---WDGKAGGTFTKEVGRVP 169
G N P +AR YSGP N+ T +S + K +V P
Sbjct: 103 NYSQGNKIN-LLPNKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFP 161
Query: 170 IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
IM S RCH +L+ E GE P+E GGYFI G E +V LL N R N
Sbjct: 162 IMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIRFN 211
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 138/315 (43%), Gaps = 74/315 (23%)
Query: 654 LANLI-PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ-GVGKLYRLQTPASPFFRPVHY 711
LA L+ P +C Q R Y+ G+QT G C +W Y+ + + ++ P + + +
Sbjct: 781 LAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM-PLVKTIAH 839
Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
+ + P G N IVA + Y GY+ ED++I+++S +RG G ++ +ELES
Sbjct: 840 NYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIES 895
Query: 772 YG------TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
+G T+ + G + Y++L
Sbjct: 896 FGKPDPLITKNLKPGAN--------------YEKL------------------------- 916
Query: 826 KLGPDGLVYVGAKLNERDPMYSY------WKESENRYV--TCRYSGKEEMCVEVVRMSSG 877
DG V VG + + D + K+ N+Y+ + Y E V+ V G
Sbjct: 917 ---VDGFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHG 973
Query: 878 FTEGGSVTPNCAYIGY---RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
PN G R +RN +GDK +SR+G KGI ++ P D+PFT+ GL PD
Sbjct: 974 --------PNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPD 1025
Query: 935 IVFNPHGFPSRMTIG 949
++ NPH PSRMT G
Sbjct: 1026 LIVNPHSHPSRMTNG 1040
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-------------TLKLNIVKAAISEPKVP 118
+I SFD ++D G+ V+ + ++ + ++ N I P+
Sbjct: 43 NIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQFNFTDVNIERPQHR 102
Query: 119 AGPVGIHFNKYYPTEARQTRSVYSGPFNV------TVAWS---WDGKAGGTFTKEVGRVP 169
G N P +AR YSGP N+ T +S + K +V P
Sbjct: 103 NYSQGNKIN-LLPNKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFP 161
Query: 170 IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
IM S RCH +L+ E GE P+E GGYFI G E +V LL N R N
Sbjct: 162 IMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIRFN 211
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3 SV=1
Length = 1242
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 138/315 (43%), Gaps = 74/315 (23%)
Query: 654 LANLI-PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ-GVGKLYRLQTPASPFFRPVHY 711
LA L+ P +C Q R Y+ G+QT G C +W Y+ + + ++ P + + +
Sbjct: 781 LAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM-PLVKTIAH 839
Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
+ + P G N IVA + Y GY+ ED++I+++S +RG G ++ +ELES
Sbjct: 840 NYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIES 895
Query: 772 YG------TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
+G T+ + G + Y++L
Sbjct: 896 FGKPDPLITKNLKPGAN--------------YEKL------------------------- 916
Query: 826 KLGPDGLVYVGAKLNERDPMYSY------WKESENRYV--TCRYSGKEEMCVEVVRMSSG 877
DG V VG + + D + K+ N+Y+ + Y E V+ V G
Sbjct: 917 ---VDGFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHG 973
Query: 878 FTEGGSVTPNCAYIGY---RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
PN G R +RN +GDK +SR+G KGI ++ P D+PFT+ GL PD
Sbjct: 974 --------PNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPD 1025
Query: 935 IVFNPHGFPSRMTIG 949
++ NPH PSRMT G
Sbjct: 1026 LIVNPHSHPSRMTNG 1040
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-------------TLKLNIVKAAISEPKVP 118
+I SFD ++D G+ V+ + ++ + ++ N I P+
Sbjct: 43 NIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQFNFTDVNIERPQHR 102
Query: 119 AGPVGIHFNKYYPTEARQTRSVYSGPFNV------TVAWS---WDGKAGGTFTKEVGRVP 169
G N P +AR YSGP N+ T +S + K +V P
Sbjct: 103 NYSQGNKIN-LLPNKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFP 161
Query: 170 IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
IM S RCH +L+ E GE P+E GGYFI G E +V LL N R N
Sbjct: 162 IMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIRFN 211
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 138/315 (43%), Gaps = 74/315 (23%)
Query: 654 LANLI-PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ-GVGKLYRLQTPASPFFRPVHY 711
LA L+ P +C Q R Y+ G+QT G C +W Y+ + + ++ P + + +
Sbjct: 781 LAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM-PLVKTIAH 839
Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
+ + P G N IVA + Y GY+ ED++I+++S +RG G ++ +ELES
Sbjct: 840 NYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIES 895
Query: 772 YG------TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
+G T+ + G + Y++L
Sbjct: 896 FGKPDPLITKNLKPGAN--------------YEKL------------------------- 916
Query: 826 KLGPDGLVYVGAKLNERDPMYSY------WKESENRYV--TCRYSGKEEMCVEVVRMSSG 877
DG V VG + + D + K+ N+Y+ + Y E V+ V G
Sbjct: 917 ---VDGFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHG 973
Query: 878 FTEGGSVTPNCAYIGY---RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
PN G R +RN +GDK +SR+G KGI ++ P D+PFT+ GL PD
Sbjct: 974 --------PNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPD 1025
Query: 935 IVFNPHGFPSRMTIG 949
++ NPH PSRMT G
Sbjct: 1026 LIVNPHSHPSRMTNG 1040
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-------------TLKLNIVKAAISEPKVP 118
+I SFD ++D G+ V+ + ++ + ++ N I P+
Sbjct: 43 NIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQFNFTDVNIERPQHR 102
Query: 119 AGPVGIHFNKYYPTEARQTRSVYSGPFNV------TVAWS---WDGKAGGTFTKEVGRVP 169
G N P +AR + YSGP + T +S + K +V P
Sbjct: 103 NYSQGNKIN-LLPNKARLSGLSYSGPVKLAAEVILTAHYSNGRQEVKRASIPPFQVSTFP 161
Query: 170 IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
IM S RCH +L+ E GE P+E GGYFI G E +V LL N R N
Sbjct: 162 IMRGSNRCHTHDLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIRFN 211
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 138/315 (43%), Gaps = 74/315 (23%)
Query: 654 LANLI-PMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQ-GVGKLYRLQTPASPFFRPVHY 711
LA L+ P +C Q R Y+ G+QT G C +W Y+ + + ++ P + + +
Sbjct: 781 LAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEM-PLVKTIAH 839
Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
+ + P G N IVA + Y GY+ ED++I+++S +RG G ++ +ELES
Sbjct: 840 NYV----IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIES 895
Query: 772 YG------TETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED 825
+G T+ + G + Y++L
Sbjct: 896 FGKPDPLITKNLKPGAN--------------YEKL------------------------- 916
Query: 826 KLGPDGLVYVGAKLNERDPMYSY------WKESENRYV--TCRYSGKEEMCVEVVRMSSG 877
DG V VG + + D + K+ N+Y+ + Y E V+ V G
Sbjct: 917 ---VDGFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHG 973
Query: 878 FTEGGSVTPNCAYIGY---RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
PN G R +RN +GDK +SR+G KGI ++ P D+PFT+ GL PD
Sbjct: 974 --------PNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPD 1025
Query: 935 IVFNPHGFPSRMTIG 949
++ NPH PSRMT G
Sbjct: 1026 LIVNPHSHPSRMTNG 1040
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 23/170 (13%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGK-------------TLKLNIVKAAISEPKVP 118
+I SFD ++D G+ V+ + ++ + ++ N I P+
Sbjct: 43 NIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQFNFTDVNIERPQHR 102
Query: 119 AGPVGIHFNKYYPTEARQTRSVYSGPFNV------TVAWS---WDGKAGGTFTKEVGRVP 169
G N P +AR YSGP N+ T +S + K +V P
Sbjct: 103 NYSQGNKIN-LLPNKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFP 161
Query: 170 IMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRN 219
IM S RCH +L+ E GE P+E GGYFI G E +V LL N R N
Sbjct: 162 IMRGSNRCHTYHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIRFN 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,087,317
Number of Sequences: 539616
Number of extensions: 16319895
Number of successful extensions: 35864
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 31169
Number of HSP's gapped (non-prelim): 4562
length of query: 951
length of database: 191,569,459
effective HSP length: 127
effective length of query: 824
effective length of database: 123,038,227
effective search space: 101383499048
effective search space used: 101383499048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)