Your job contains 1 sequence.
>psy8410
GIRVFECFRELFTLFPVNLRHIHEVLLVFKVLKMILNQNTLSAPSLKNLTDKNFGKPPDK
QNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAG
PVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLR
NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLG
VYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFG
QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLD
SEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVS
AGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFIC
PVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV
MLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP
GRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPM
PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFP
MGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSG
VDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLN
ERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPT
VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8410
(951 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 1295 1.0e-218 3
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 1063 6.5e-194 3
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 1070 8.3e-194 3
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 1070 8.3e-194 3
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 1064 2.2e-191 3
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 1058 2.8e-191 3
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 1060 3.6e-191 3
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 1014 1.9e-179 3
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 1038 3.2e-169 3
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 912 6.6e-167 3
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 502 6.3e-162 4
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 502 6.3e-162 4
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 920 8.6e-161 3
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 905 1.4e-160 3
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 896 8.6e-154 4
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 619 3.7e-151 4
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 1070 3.4e-149 3
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 1027 9.1e-143 3
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 782 5.0e-133 4
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 905 3.9e-125 2
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 856 3.1e-123 2
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 350 1.0e-93 5
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 350 1.0e-93 5
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 385 2.0e-57 3
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 382 2.2e-57 3
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 382 2.2e-57 3
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 380 3.6e-57 3
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 380 3.6e-57 3
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 380 3.6e-57 3
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 378 3.6e-57 3
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 360 6.0e-56 3
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 349 2.5e-54 3
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 337 1.6e-53 2
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 255 1.0e-52 4
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 361 2.4e-52 3
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 361 2.4e-52 3
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 255 6.5e-52 4
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 250 1.6e-51 4
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 228 3.7e-51 4
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 246 1.4e-50 4
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 316 4.3e-49 3
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 217 7.4e-49 4
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 345 1.8e-48 3
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 249 1.0e-47 4
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 213 1.2e-47 4
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 477 2.2e-47 2
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 220 4.0e-45 5
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 213 1.1e-44 4
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 213 1.1e-44 4
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 234 3.7e-43 5
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 376 2.7e-42 3
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 258 7.3e-42 4
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 228 1.9e-41 5
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 228 1.9e-41 5
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 258 6.3e-41 4
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 280 6.1e-40 3
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 257 3.3e-35 3
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 256 1.0e-34 3
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 256 1.3e-34 3
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 256 1.3e-34 3
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 256 1.4e-34 3
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 256 1.4e-34 3
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 256 1.4e-34 3
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 256 1.4e-34 3
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 196 8.8e-28 3
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 217 8.8e-26 2
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 181 1.1e-17 2
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 160 2.9e-16 2
UNIPROTKB|C9JS83 - symbol:POLR1B "DNA-directed RNA polyme... 214 3.1e-16 1
UNIPROTKB|C9JJG2 - symbol:POLR1B "DNA-directed RNA polyme... 197 2.0e-14 1
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 139 5.9e-13 4
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 128 1.2e-12 4
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 145 9.4e-12 5
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 135 1.1e-11 4
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 136 1.5e-11 4
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 136 1.9e-11 4
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 136 1.9e-11 4
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 131 2.4e-11 4
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 134 5.4e-11 3
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 125 5.9e-11 3
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 124 6.1e-11 4
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 135 1.0e-10 6
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 133 1.6e-10 5
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 121 3.8e-09 4
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 125 1.4e-08 4
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 126 2.8e-08 3
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 125 3.0e-08 3
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 135 6.3e-07 3
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 135 6.3e-07 3
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 135 6.3e-07 3
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 135 6.3e-07 3
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 105 1.3e-06 5
UNIPROTKB|I3LR52 - symbol:I3LR52 "Uncharacterized protein... 120 3.4e-06 1
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 1295 (460.9 bits), Expect = 1.0e-218, Sum P(3) = 1.0e-218
Identities = 261/513 (50%), Positives = 347/513 (67%)
Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY 335
C+ M++ + E ++T K F G +F+ + + ++ D++L ++ HLD Y
Sbjct: 280 CVQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTY 339
Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------ 383
DKF + M KLF QG ++++ DS M+QE++ G LY + L +
Sbjct: 340 EDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRC 399
Query: 384 -EKSGTS--AVLKESDIYAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
+K TS A++ + + R A + A+ +FLATGN+++ + L LMQ SG VIMA
Sbjct: 400 LQKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIAS--RTGLGLMQNSGLVIMA 457
Query: 440 ENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
ENINRMRYMSHFRA+HRGSYF MR++E RQL DAWGFICPVHTPDGTPCGLLNHLT
Sbjct: 458 ENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLT 517
Query: 500 CQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLV 559
C+IS K++ IP L+ +GM+PL+ + + E+ +V LDG+ +G+I A +V
Sbjct: 518 CEISMRPDPKLVKAIPKHLIDMGMMPLSNR-RYLGEKLYVVFLDGKHLGHIHQSEAEKIV 576
Query: 560 PKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIG 619
+LR KI G +P+ +EI ++ P K G +PGLY+ TGP RM+RPV NL +E+IG
Sbjct: 577 DELRYGKIFGT-LPQMMEIGFI--PFKKNGQFPGLYIATGPARMMRPVWNLKWKRVEYIG 633
Query: 620 TFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
T EQ++M+I I KE YP TTH EL+KT F+SNLANLIPMPD NQSPRNMYQCQMGKQT
Sbjct: 634 TLEQLYMEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQT 693
Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
MGTPCLNW Q KLYRLQTP +P FRPVHYD + +D+F MGTNAIVAVISYTGYDMED
Sbjct: 694 MGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMED 753
Query: 740 AMILNKSSYERGFAHGCIFKSMFIELESGYNYY 772
AMI+NK++YERGFA+G I+K+ F+ L+ +Y+
Sbjct: 754 AMIINKAAYERGFAYGSIYKTKFLTLDKKSSYF 786
Score = 523 (189.2 bits), Expect = 1.0e-218, Sum P(3) = 1.0e-218
Identities = 99/239 (41%), Positives = 152/239 (63%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEF- 96
Q + P L N + F + P K + L LG PH+ SFD ML GLD + + + P +
Sbjct: 6 QQMKTIPVLTN-SRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWL 64
Query: 97 EIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
G+ + + + I++PKVP + + + YPT++RQ YSG +V + WS +G
Sbjct: 65 SPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGV 124
Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
++G VPIML+SK C+L TP ++++ GEH EWGG F++ G+EK+VR+LI
Sbjct: 125 QKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMT 184
Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSM 275
RRNHPI +KR++WK+RG FSDLG+ +++V+ DES+ +NV+H++ NG+A+FMFSH K +
Sbjct: 185 RRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRL 243
Score = 334 (122.6 bits), Expect = 1.0e-218, Sum P(3) = 1.0e-218
Identities = 73/161 (45%), Positives = 95/161 (59%)
Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE 851
+G ++ + + + DK YF R P L L DGL + G+KL+ P+Y Y+
Sbjct: 768 YGSIY--KTKFLTLDK--KSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDG 823
Query: 852 SENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPN-CAYIGYRIQRNPTVGDKFASRAG 910
Y + KE+ VE +R F ++P I R+ R T+GDKFASRAG
Sbjct: 824 EVATYKVVKMDEKEDCIVESIRQLGSF----DLSPKKMVAITLRVPRPATIGDKFASRAG 879
Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
QKGICS K+PAEDLPFT+SGL+PDIVFNPHGFPSRMTI +
Sbjct: 880 QKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMM 920
Score = 197 (74.4 bits), Expect = 3.0e-204, Sum P(3) = 3.0e-204
Identities = 37/48 (77%), Positives = 40/48 (83%)
Query: 765 LESG-YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
LE+G YNYYGTE +YSGVDG M A IFFGVVHYQRLRHMV DKWQ +
Sbjct: 957 LEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVR 1004
Score = 51 (23.0 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 551 LDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPE 585
LD A ++P L GEKI +E +++ +P+
Sbjct: 51 LDNSAKHMIPN-HWLSPAGEKISMKVESIWIAKPK 84
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 1063 (379.3 bits), Expect = 6.5e-194, Sum P(3) = 6.5e-194
Identities = 236/529 (44%), Positives = 327/529 (61%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG H+Q + G+ F+ KL + N VE +++L CI HL DKF
Sbjct: 285 MLRIVIEEGCHSQKQVLNYLGECFRVKLSLPDWYPN-VEAAEFLLNQCICIHLQSNTDKF 343
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYA 399
L MT KLF + +G D+ DS++ QE+++ G L+L LK++ +K
Sbjct: 344 YLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKR 403
Query: 400 AFRAS-SI--ESAMTNF-------------LATGNVSAGKNSTLQLMQASGFVIMAENIN 443
A +A+ SI E+ M F LATGN+ + + L +Q SG ++A+ +N
Sbjct: 404 AQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLN 461
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGLLNHLT C++
Sbjct: 462 FLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVV 521
Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
++++ + A IP++L LG+ P+ V+LDG +VG++ +A + L
Sbjct: 522 TKFVYT---ASIPALLCGLGVTPVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTL 578
Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
R K++ EK IP +E+ + K LYPGL+LFT P R++RPV NL G E IGT
Sbjct: 579 RRFKVLREKRIPPWMEVALIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLELGREELIGTM 637
Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
EQ+FM++ I E + GI+TH+EL LS +AN IP D NQSPRNMYQCQMGKQTMG
Sbjct: 638 EQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMG 697
Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
P L ++ + KLYRLQTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAM
Sbjct: 698 FPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAM 757
Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV---DGSMMQ 787
I+NK+S+ERGFAHG ++KS FI+L + G + + GV D +MQ
Sbjct: 758 IVNKASWERGFAHGSVYKSEFIDLSEKFKQ-GEDNLVFGVKPGDPRVMQ 805
Score = 498 (180.4 bits), Expect = 6.5e-194, Sum P(3) = 6.5e-194
Identities = 105/241 (43%), Positives = 143/241 (59%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G PP++Q L L H+ SF++ EGL AV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPPEQQKAALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + L IV A IS P VP G + N YP E R +S Y G ++W+ +G
Sbjct: 68 FKDERISLTIVDAVISPPSVPKGTICKDLN-VYPAECRGRKSTYRGRLTADISWAVNGVP 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+L NL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK+RGL ++ GV +R V+ + SA N LH+V NG+ F +RK +
Sbjct: 187 RNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246
Query: 278 L 278
L
Sbjct: 247 L 247
Score = 356 (130.4 bits), Expect = 6.5e-194, Sum P(3) = 6.5e-194
Identities = 76/151 (50%), Positives = 96/151 (63%)
Query: 804 VSDKW-QTKD--YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
+S+K+ Q +D FG P + + KL DGL ++GAKL DP YSY +
Sbjct: 781 LSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVY 840
Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
Y KE V+ +++ S + GS C I RI RNPT+GDKFASR GQKGI S WP
Sbjct: 841 YKSKENCVVDNIKVCSN--DMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 921 AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
AED+PFT+SG++PDI+FNPHGFPSRMTIG L
Sbjct: 899 AEDMPFTESGMMPDILFNPHGFPSRMTIGML 929
Score = 190 (71.9 bits), Expect = 2.1e-176, Sum P(3) = 2.1e-176
Identities = 46/117 (39%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ L
Sbjct: 969 AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPLGG 1028
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C MCVE + S E
Sbjct: 1029 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLLE 1082
Score = 39 (18.8 bits), Expect = 3.4e-27, Sum P(2) = 3.4e-27
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 479 ICPVHTPDGTPCGLLNHLTTNCQ 501
I P P GT C LN C+
Sbjct: 82 ISPPSVPKGTICKDLNVYPAECR 104
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 1070 (381.7 bits), Expect = 8.3e-194, Sum P(3) = 8.3e-194
Identities = 227/520 (43%), Positives = 320/520 (61%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG TQ + G+ F+ KL + NE + +++ CI HL +KF
Sbjct: 323 MLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKF 381
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG------------ 387
L MT KLF + +G D+ DS++ QE++T G L+L LK++ G
Sbjct: 382 YMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKK 441
Query: 388 ---TSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
TS + ++ F + ATGN+ + + L L+Q SG ++A+ +N
Sbjct: 442 AQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLN 499
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGL+NHLT C++
Sbjct: 500 FIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVV 559
Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
++++ + A IP++L +LG+ P+ + V+LDG +VG++ +A + L
Sbjct: 560 TQFVYT---ASIPALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSL 616
Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
R K++ EK IP +E+V + K LYPGL+LFT P R++RPV NLA G E IGT
Sbjct: 617 RHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTM 675
Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
EQ+FM++ I E + G+TTH+EL LS +AN IP D NQSPRNMYQCQMGKQTMG
Sbjct: 676 EQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMG 735
Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
P L ++ + KLYRLQTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAM
Sbjct: 736 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAM 795
Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
I+NK+S+ERGFAHG ++KS FI+L G ++ G+
Sbjct: 796 IVNKASWERGFAHGSVYKSEFIDLSEKIKQ-GDSSLVFGI 834
Score = 485 (175.8 bits), Expect = 8.3e-194, Sum P(3) = 8.3e-194
Identities = 102/241 (42%), Positives = 141/241 (58%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL LAV+ I P EF
Sbjct: 46 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 105
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + I+ A IS P VP G + N YP E R RS Y G + W+ +G +
Sbjct: 106 FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 164
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+LRNL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 165 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 224
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK RG ++ GV + V+ + SA N LH++ NG+ F +RK +
Sbjct: 225 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 284
Query: 278 L 278
L
Sbjct: 285 L 285
Score = 361 (132.1 bits), Expect = 8.3e-194, Sum P(3) = 8.3e-194
Identities = 72/138 (52%), Positives = 87/138 (63%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + + KL DGL ++GAKL DP YSY + Y KE V+ ++
Sbjct: 832 FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIK 891
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ S T G C I R+ RNPT+GDKFASR GQKGI S WPAED+PFT+SG+VP
Sbjct: 892 VCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 949
Query: 934 DIVFNPHGFPSRMTIGFL 951
DI+FNPHGFPSRMTIG L
Sbjct: 950 DILFNPHGFPSRMTIGML 967
Score = 178 (67.7 bits), Expect = 1.7e-174, Sum P(3) = 1.7e-174
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 1007 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 1066
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 1067 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1120
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 1070 (381.7 bits), Expect = 8.3e-194, Sum P(3) = 8.3e-194
Identities = 227/520 (43%), Positives = 320/520 (61%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG TQ + G+ F+ KL + NE + +++ CI HL +KF
Sbjct: 285 MLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKF 343
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG------------ 387
L MT KLF + +G D+ DS++ QE++T G L+L LK++ G
Sbjct: 344 YMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKK 403
Query: 388 ---TSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
TS + ++ F + ATGN+ + + L L+Q SG ++A+ +N
Sbjct: 404 AQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLN 461
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGL+NHLT C++
Sbjct: 462 FIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVV 521
Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
++++ + A IP++L +LG+ P+ + V+LDG +VG++ +A + L
Sbjct: 522 TQFVYT---ASIPALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSL 578
Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
R K++ EK IP +E+V + K LYPGL+LFT P R++RPV NLA G E IGT
Sbjct: 579 RHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTM 637
Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
EQ+FM++ I E + G+TTH+EL LS +AN IP D NQSPRNMYQCQMGKQTMG
Sbjct: 638 EQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMG 697
Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
P L ++ + KLYRLQTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAM
Sbjct: 698 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAM 757
Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
I+NK+S+ERGFAHG ++KS FI+L G ++ G+
Sbjct: 758 IVNKASWERGFAHGSVYKSEFIDLSEKIKQ-GDSSLVFGI 796
Score = 485 (175.8 bits), Expect = 8.3e-194, Sum P(3) = 8.3e-194
Identities = 102/241 (42%), Positives = 141/241 (58%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL LAV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + I+ A IS P VP G + N YP E R RS Y G + W+ +G +
Sbjct: 68 FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+LRNL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK RG ++ GV + V+ + SA N LH++ NG+ F +RK +
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246
Query: 278 L 278
L
Sbjct: 247 L 247
Score = 361 (132.1 bits), Expect = 8.3e-194, Sum P(3) = 8.3e-194
Identities = 72/138 (52%), Positives = 87/138 (63%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + + KL DGL ++GAKL DP YSY + Y KE V+ ++
Sbjct: 794 FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIK 853
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ S T G C I R+ RNPT+GDKFASR GQKGI S WPAED+PFT+SG+VP
Sbjct: 854 VCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 911
Query: 934 DIVFNPHGFPSRMTIGFL 951
DI+FNPHGFPSRMTIG L
Sbjct: 912 DILFNPHGFPSRMTIGML 929
Score = 178 (67.7 bits), Expect = 1.7e-174, Sum P(3) = 1.7e-174
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 969 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 1028
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 1029 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 1064 (379.6 bits), Expect = 2.2e-191, Sum P(3) = 2.2e-191
Identities = 229/520 (44%), Positives = 318/520 (61%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG TQ + G+ F+ K+ + NE + +++ CI HL +KF
Sbjct: 322 MLRIVMEEGCATQKQVLNYLGERFRVKVNLPDWYPNE-QAAEFLFNECICIHLKSNTEKF 380
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------------KE 384
L MT KLF + +G ++ DS++ QE++T G L+L LK K+
Sbjct: 381 YMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKK 440
Query: 385 KSGTSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
TS L ++ + LATGN+ + + L +Q SG ++A+ +N
Sbjct: 441 AQKTSVSLNTENLMKILNLGIDLTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLN 498
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGL+NHLT C++
Sbjct: 499 FIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTATCEVV 558
Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
++++ + A IP++L SLG+ P+ + V+LDG +VG+ ++A S+ L
Sbjct: 559 TQFVYT---ASIPALLCSLGVTPVDSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSL 615
Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
R K++ EK IP +E+V + K LYPGLYLFT P R++RPV NL G E IGT
Sbjct: 616 RHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLYLFTTPCRLVRPVQNLGLGREELIGTM 674
Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
EQ+FM++ I E G+TTH+EL LS +AN IP D NQSPRNMYQCQMGKQTMG
Sbjct: 675 EQIFMNVAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMG 734
Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
P L ++ + KLYRLQTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAM
Sbjct: 735 FPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAM 794
Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
ILNK+S+ERGFAHG ++KS FI+L G +++ GV
Sbjct: 795 ILNKASWERGFAHGSVYKSEFIDLSEKIKQ-GDDSLVFGV 833
Score = 479 (173.7 bits), Expect = 2.2e-191, Sum P(3) = 2.2e-191
Identities = 102/242 (42%), Positives = 145/242 (59%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL AV+ I P EF
Sbjct: 44 RNLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQAIPPFEFT 103
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + L IV AAIS P VP G + N YP E R RS Y G ++W+ +G +
Sbjct: 104 FKDERISLTIVDAAISPPTVPKGSICKELN-IYPAECRGRRSTYRGRLTADISWAVNGIS 162
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+L +L+P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 163 KGVIKQFLGYVPIMVKSKLCNLYSLSPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 222
Query: 218 RNHPIAIKRNAWKNRGLLFSD-LGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
RN PIA+ R WK+RG ++ +GV + V+ + SA N LH++ NG+ F +RK +
Sbjct: 223 RNFPIAMVRPKWKSRGPGYTQYVGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELF 282
Query: 277 LL 278
L
Sbjct: 283 FL 284
Score = 350 (128.3 bits), Expect = 2.2e-191, Sum P(3) = 2.2e-191
Identities = 70/138 (50%), Positives = 85/138 (61%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + + KL DGL +VGA+L DP YSY + Y KE V+ ++
Sbjct: 831 FGVRPGDPRVAQKLDDDGLPFVGAQLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIK 890
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ T G C I R+ RNPT+GDKFASR GQKGI S WP ED+PFT+SG+VP
Sbjct: 891 VCGNDTGSGRF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVP 948
Query: 934 DIVFNPHGFPSRMTIGFL 951
DI+FNPHGFPSRMTIG L
Sbjct: 949 DILFNPHGFPSRMTIGML 966
Score = 182 (69.1 bits), Expect = 1.2e-173, Sum P(3) = 1.2e-173
Identities = 44/117 (37%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYNYYGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 1006 AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 1065
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 1066 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1119
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 1058 (377.5 bits), Expect = 2.8e-191, Sum P(3) = 2.8e-191
Identities = 228/519 (43%), Positives = 313/519 (60%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG TQ + G+ F+ KL + NE + +++ CI HL +KF
Sbjct: 285 MLRIVMEEGCSTQKQVLNYLGERFRVKLSLPDWYPNE-QAAEFLFNQCICIHLKSNTEKF 343
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------------KE 384
L MT KLF + +G ++ DS+M QE++T G L+L LK K+
Sbjct: 344 YMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKK 403
Query: 385 KSGTSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
T+ L ++ F + LATGN+ + + L +Q SG ++A+ +N
Sbjct: 404 SQKTNVSLNSENLMKIFSLGIDLTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLN 461
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGL+NHLT C++
Sbjct: 462 FIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEV- 520
Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
S A IP++L +LG+ P+ + V+LDG ++G+ +IA + LR
Sbjct: 521 -VTQSVYTASIPALLCNLGVTPVDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLR 579
Query: 564 MLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFE 622
K++ EK IP +E+ + K LYPGLYLFT P R++RPV NL G E IGT E
Sbjct: 580 HFKVLREKRIPPWMEVALIPMTGKP-SLYPGLYLFTTPCRLVRPVQNLELGKEELIGTME 638
Query: 623 QVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
Q+FM++ I E G+TTH+EL LS +AN IP D NQSPRNMYQCQMGKQTMG
Sbjct: 639 QIFMNVAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGF 698
Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
P L ++ + KLYRLQTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAMI
Sbjct: 699 PLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMI 758
Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
+NK+S+ERGFAHG ++KS FI+L G +++ GV
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSERIKQ-GDDSLVFGV 796
Score = 485 (175.8 bits), Expect = 2.8e-191, Sum P(3) = 2.8e-191
Identities = 102/241 (42%), Positives = 142/241 (58%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL AV+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKPALQELTRAHVESFNYAVREGLSHAVQAVPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + L IV A IS P VP G + N YP E R RS Y G ++WS +G +
Sbjct: 68 FKDERICLTIVDAVISPPAVPKGSICKELN-VYPAECRGRRSTYRGKLTADISWSVNGIS 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+L NL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGVIKQFLGYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK+RG ++ GV + V+ + SA N LH++ NG+ F +RK +
Sbjct: 187 RNFPIAMVRPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246
Query: 278 L 278
L
Sbjct: 247 L 247
Score = 349 (127.9 bits), Expect = 2.8e-191, Sum P(3) = 2.8e-191
Identities = 70/138 (50%), Positives = 86/138 (62%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + + KL DGL ++GA+L DP YSY + Y KE V+ ++
Sbjct: 794 FGVKPGDPRVLQKLDNDGLPFIGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIK 853
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ S T G C I R+ RNPT+GDKFASR GQKGI S WP ED+PFT+SG+VP
Sbjct: 854 VCSNDTGTGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVP 911
Query: 934 DIVFNPHGFPSRMTIGFL 951
DI+FNPHGFPSRMTIG L
Sbjct: 912 DILFNPHGFPSRMTIGML 929
Score = 185 (70.2 bits), Expect = 5.7e-174, Sum P(3) = 5.7e-174
Identities = 50/142 (35%), Positives = 72/142 (50%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYNYYGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 969 AGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE--- 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 1029 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPP 1085
Query: 881 -GGSVTPNCAYIGYRIQRNPTV 901
S N YI R+ T+
Sbjct: 1086 PSWSALRNRKYICALCNRSDTI 1107
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 1060 (378.2 bits), Expect = 3.6e-191, Sum P(3) = 3.6e-191
Identities = 227/519 (43%), Positives = 314/519 (60%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG TQ + G+ F+ KL + NE + +++ CI HL +KF
Sbjct: 285 MLRIVMEEGCSTQKQVLNYLGERFRVKLSLPDWYPNE-QAAEFLFNQCICIHLKSNTEKF 343
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------------KE 384
L MT KLF + +G D+ DS++ QE++T G L+L LK K
Sbjct: 344 YMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKR 403
Query: 385 KSGTSAVLKESDIYAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
T+ + ++ F + + LATGN+ + + L +Q SG ++A+ +N
Sbjct: 404 SQKTNVSINTENLMRIFNLGTDLTKPFEYLLATGNLRS--KTGLGFLQDSGLCVVADKLN 461
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGL+NHLT C++
Sbjct: 462 FIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEV- 520
Query: 504 EYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
A +P++L SLG+ P+ + V+LDG +VG++ ++A S+ LR
Sbjct: 521 -VTQCVYTASVPTLLCSLGVTPVDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIAESLR 579
Query: 564 MLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFE 622
K++ EK IP +E+ + K LYPGL+LFT P R++RPV NL G E IGT E
Sbjct: 580 HFKVLKEKRIPPWMEVALIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLELGKEELIGTME 638
Query: 623 QVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
Q+FM+I I E G+TTH+EL LS +AN IP D NQSPRNMYQCQMGKQTMG
Sbjct: 639 QIFMNIAIFEDEVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGF 698
Query: 683 PCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMI 742
P L ++ + KLYRLQTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAMI
Sbjct: 699 PLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMI 758
Query: 743 LNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
+NK+S+ERGFAHG ++KS FI+L G +++ GV
Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQ-GDDSLVFGV 796
Score = 477 (173.0 bits), Expect = 3.6e-191, Sum P(3) = 3.6e-191
Identities = 100/241 (41%), Positives = 141/241 (58%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
QN S PSLK+LT+ ++G P ++Q L L H+ SF++ + EGL AV+ I P EF
Sbjct: 8 QNLPSGPSLKHLTNPSYGIPQEQQKPALQELTRAHVESFNYAVREGLSHAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + L IV A IS P VP G + N YP E R RS Y G ++W+ +G +
Sbjct: 68 FKDERISLTIVDAVISPPMVPKGNICKELN-IYPAECRGRRSTYRGKLTADISWAVNGIS 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G +PIM+KSK C+L +L P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGYIPIMVKSKLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK RG ++ GV + V+ + SA N LH++ NG+ F +RK +
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246
Query: 278 L 278
L
Sbjct: 247 L 247
Score = 354 (129.7 bits), Expect = 3.6e-191, Sum P(3) = 3.6e-191
Identities = 70/138 (50%), Positives = 86/138 (62%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + + KL DGL ++GA+L DP YSY + Y KE V+ ++
Sbjct: 794 FGVKPGDPRILQKLDDDGLPFIGARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIK 853
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ S T G C I R+ RNPT+GDKFASR GQKGI S WP ED+PFT+SG+VP
Sbjct: 854 VCSNDTGNGRF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVEDMPFTESGMVP 911
Query: 934 DIVFNPHGFPSRMTIGFL 951
DI+FNPHGFPSRMTIG L
Sbjct: 912 DILFNPHGFPSRMTIGML 929
Score = 179 (68.1 bits), Expect = 1.0e-172, Sum P(3) = 1.0e-172
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 969 AGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 1029 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 1014 (362.0 bits), Expect = 1.9e-179, Sum P(3) = 1.9e-179
Identities = 223/528 (42%), Positives = 316/528 (59%)
Query: 270 SHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCIL 329
S KS C+ M++ + ++G T+ + G+ F+ KL +E + ++L C+
Sbjct: 275 SFYKS-CVSEMLRIVMDQGCTTKIKVLNYLGERFRVKLNLPEWFTHE-QCAHFLLDECLC 332
Query: 330 PHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTS 389
HL +KF L MT KLF + ++ DS M E++T G LYL LK++ G
Sbjct: 333 IHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLYLMFLKEKMEGWL 392
Query: 390 AVLK--------------ESDIYAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASG 434
+K + F + + A LATGN+ + + L ++Q SG
Sbjct: 393 VSVKLALEKKPQRVGGLTPDSMTKLFNMGTDLTKAFEYLLATGNLMS--KTGLGMLQNSG 450
Query: 435 FVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
++A+ +N +RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGL+N
Sbjct: 451 LCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMN 510
Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQI 554
H+T +C+I P + +P +L SLG+ V+LDG ++G++ ++
Sbjct: 511 HMTAHCEI--VAPVYPTSTLPGLLCSLGVNAADGNPGQAYSDCYPVILDGAMIGWVEKEV 568
Query: 555 ATSLVPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
A S++ LR K++GEK +P EIV + + K LYPGLYLFT P RM+R V NL+ G
Sbjct: 569 APSVIESLRRFKVLGEKKVPPWTEIVLVPQTGKA-SLYPGLYLFTTPCRMVRTVRNLSLG 627
Query: 614 NIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
E IG FEQV++++ I KE G+TTH+EL LS +A IP D NQSPRNMYQC
Sbjct: 628 KQELIGIFEQVYLNVGIFEKEIEDGVTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQC 687
Query: 674 QMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYT 733
QM KQTMG P +++Y+ KLYRLQTP SP RP YD D+DN+P+GTNAIVAVISYT
Sbjct: 688 QMSKQTMGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYT 747
Query: 734 GYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
GYDMEDAMI+NKSS+ERGFAHG ++K+ I+L G +++ GV
Sbjct: 748 GYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVK--GDDSIVFGV 793
Score = 443 (161.0 bits), Expect = 1.9e-179, Sum P(3) = 1.9e-179
Identities = 95/240 (39%), Positives = 138/240 (57%)
Query: 39 NTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEI 98
N + PSLK+LT+ FG P +KQ + L HI SFD + +GL VE I P+EF
Sbjct: 8 NLKTEPSLKHLTEAGFGVPKEKQRVPVQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLY 67
Query: 99 YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAG 158
G + L+ V+A I P V G + + +P E R R Y V+WS +G
Sbjct: 68 KGDRISLSFVEAIIHTPSVSKGGISRDL-RVFPAECRGRRCTYRAKLVADVSWSVNGVPK 126
Query: 159 GTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
G + +G++PIM+KSK C+L L+P +L+E E +E GGYFIV G EK++RLLI RR
Sbjct: 127 GIIKQSLGQMPIMVKSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRR 186
Query: 219 NHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
N+PIA+ R +K+RG ++ + +R VK + +A N LH++ NG+ F +RK + L
Sbjct: 187 NYPIAVSRPKFKSRGQGYTQYAISMRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFL 246
Score = 323 (118.8 bits), Expect = 1.9e-179, Sum P(3) = 1.9e-179
Identities = 69/150 (46%), Positives = 91/150 (60%)
Query: 804 VSDKWQTKD--YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRY 861
+S+K + D FG P + + KL DGL ++G+ L DP Y Y + + Y
Sbjct: 779 LSEKVKGDDSIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDPFYGYISLNTGQSHVYFY 838
Query: 862 SGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPA 921
+E V+ +++ S T G C + R+ RNPT+GDKFASR GQKGI S WPA
Sbjct: 839 KYQESCVVDNIKVCSNETGTGRFKRIC--VTSRVPRNPTIGDKFASRHGQKGILSRLWPA 896
Query: 922 EDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
ED+PFT+SG+ PDI+FNPHGFPSRMTIG L
Sbjct: 897 EDMPFTESGMSPDILFNPHGFPSRMTIGML 926
Score = 181 (68.8 bits), Expect = 1.8e-164, Sum P(3) = 1.8e-164
Identities = 42/116 (36%), Positives = 60/116 (51%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
+GYNYYGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD
Sbjct: 966 AGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPMGG 1025
Query: 827 LGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
G + G ERD + ++ +R C ++C++ + S E
Sbjct: 1026 RNVQGGIRFGEM--ERDALLAHGTSFLLHDRLFNCSDRSVAQVCMDCGSLLSTLLE 1079
Score = 38 (18.4 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 271 HRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI--FKEKLQYDLR 312
HRK++CLL +S E + + K F ++ K++ D++
Sbjct: 1090 HRKTICLL-CNKSDSIETVSVPYVFKYFVAELAAMNIKIKLDVK 1132
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 1038 (370.5 bits), Expect = 3.2e-169, Sum P(3) = 3.2e-169
Identities = 221/521 (42%), Positives = 315/521 (60%)
Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY 335
C+ M++++ E G +TQ + + G+ F+ KL + NE + D++ CI HL D
Sbjct: 166 CVTEMLRAVAEAGCYTQQNVLEYLGKSFRVKLNLPEWYSNE-QAADFIFNKCICIHLTDR 224
Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------ 383
+KF L MT KL +G D+ DS+M QE++T G L+L LK+
Sbjct: 225 TEKFYLLCMMTRKLCAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFV 284
Query: 384 -EKSGTSAVLK-ESD-IYAAFRASS-IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
EK A + +D + AF ++ + + LATGN+ + + L ++Q SG ++
Sbjct: 285 LEKRTEKADININADSLMKAFNMTTDVTKSFEYLLATGNLRS--KTGLGMLQDSGLCVVG 342
Query: 440 ENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
+ +N +RY+SHFR +HRGS F +MR++ R+L ++WGF+CPV TPDG PCGL+NH+T
Sbjct: 343 DKLNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAV 402
Query: 500 CQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
C+I +E +P + +P +L +LG++P+ + V+LDG +VG++ +A +
Sbjct: 403 CEIVTEMVP---VTDLPPLLCALGVVPIDATPSRPYAECYRVLLDGAVVGWVEWDLAPQV 459
Query: 559 VPKLRMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEW 617
LR KI EK P E+V + K LYPGL++FT P RM+RPV NL G EW
Sbjct: 460 AEALRRFKITQEKRFPSRAEVVLIPMTGKP-SLYPGLFIFTTPCRMVRPVKNLLYGRKEW 518
Query: 618 IGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
IGT EQVFM++ + PG+TTH+EL LS +ANLIP D NQSPRNMYQCQMGK
Sbjct: 519 IGTLEQVFMNVATMESDVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQMGK 578
Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
QTMG P N++ + KLY L TP SP RP YD MD++P+GTN++VAVISY+GYDM
Sbjct: 579 QTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDM 638
Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
EDAMI+NKSS+ERGFA+G + K I+L N G ++
Sbjct: 639 EDAMIVNKSSWERGFAYGSVIKMESIDLSLKANRGGDNLVF 679
Score = 345 (126.5 bits), Expect = 3.2e-169, Sum P(3) = 3.2e-169
Identities = 70/138 (50%), Positives = 87/138 (63%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + +++KL DGL +VG+ L DP YSY + T Y KE V+ ++
Sbjct: 679 FGIRPGDPNVKEKLDADGLPFVGSILQPGDPFYSYMNLNTGETFTVYYQNKEVGIVDNIK 738
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ S G C I R+ RNPTVGDKFASR GQKGI S WP ED+PFT++G+VP
Sbjct: 739 LCSNDRGTGKFKKAC--ITVRVPRNPTVGDKFASRHGQKGILSQLWPVEDMPFTENGMVP 796
Query: 934 DIVFNPHGFPSRMTIGFL 951
DI+FNPHGFPSRMTIG L
Sbjct: 797 DILFNPHGFPSRMTIGML 814
Score = 300 (110.7 bits), Expect = 3.2e-169, Sum P(3) = 3.2e-169
Identities = 67/169 (39%), Positives = 103/169 (60%)
Query: 147 VTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGH 206
V ++WS + GT VG VPIM+KSK C+L NL+P +LI+ E +E GGYFI+ G
Sbjct: 1 VDISWSVNDIPQGTIKHPVGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGL 60
Query: 207 EKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSAR 266
EK++R+LI RRN P+A+ R+ WKNRG F++ GV + VK + SA N LH++ NG
Sbjct: 61 EKVIRMLIMPRRNFPLAMTRHKWKNRGPGFTEYGVVMHCVKDEHSAINMNLHYLENGCVM 120
Query: 267 FMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLN 315
F +K + L + +L + + D ++F ++ K+K + D ++N
Sbjct: 121 VNFIFQKELFFLPLGFAL--KALVNFTDYQIF-EELVKDK-KNDTFYVN 165
Score = 177 (67.4 bits), Expect = 1.6e-151, Sum P(3) = 1.6e-151
Identities = 42/115 (36%), Positives = 65/115 (56%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKAL 823
+ +GYN++GTE MYSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 852 VSAGYNFFGTEKMYSGISGVELEADIFVGVVYYQRLRHMVSDKFQVRTTGPRDSVTNQPI 911
Query: 824 EDKLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSS 876
+ + +G + G ERD + ++ +R +C + +C M S
Sbjct: 912 KGR-NVEGGIRFGEM--ERDALLAHGTSFLLHDRLFSCSDGCEAYVCTSCGSMLS 963
Score = 43 (20.2 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
P+G A+ A++++T Y + + ++ +K + F C+ + + E+G
Sbjct: 133 PLGF-ALKALVNFTDYQIFEELVKDKKNDT--FYVNCVTEMLRAVAEAG 178
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 912 (326.1 bits), Expect = 6.6e-167, Sum P(3) = 6.6e-167
Identities = 206/506 (40%), Positives = 297/506 (58%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
++++ +++Q ++ + G F+ ++++E+ +L +L HL + DKF
Sbjct: 290 LLRTYKTYNLYSQQETLAYLGDKFRVVFGAS-PDMSDIEVGKEVLKRIVLVHLPNNADKF 348
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLK---ESD 396
L M KL+ +V G D+ D+ QE++ GG LY ++K++ +K +SD
Sbjct: 349 RMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSD 408
Query: 397 I------------YAA--FRA--SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
I Y F +I + FL+TGN+ + S L L Q SG+ ++AE
Sbjct: 409 INRGVGINFDDRKYMTRVFSRINENIGQKLQYFLSTGNLVS--QSGLDLQQVSGYTVVAE 466
Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
IN R++SHFR VHRGS+F E++++ R+L ++WGF+CPVHTPDG+PCGLLNHL+ C
Sbjct: 467 KINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKC 526
Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
+I+ + ++Q+P L LG+LP P V LDG+IVG+ + +
Sbjct: 527 KIAT--EASDVSQVPKALTQLGVLPADSFAAG-PNLCC-VQLDGKIVGWTTHEQGRIVAD 582
Query: 561 KLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIG 619
LR K+ G +P LEI Y+ P G YPGLY+F G RM+RPV L + +G
Sbjct: 583 TLRYWKVNGGHGLPLDLEIGYV--PPSNKGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVG 640
Query: 620 TFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
FEQV+M++ +T +E I +H E + T+ LS LANL P D NQSPRNMYQCQMGKQT
Sbjct: 641 PFEQVYMNVAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQT 700
Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
MGTP ++ KLYRLQT +P + YD MDNFP G NAIVAVISYTGYDM+D
Sbjct: 701 MGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDD 760
Query: 740 AMILNKSSYERGFAHGCIFKSMFIEL 765
AMI+NKS+ ERGF +G ++K+ ++L
Sbjct: 761 AMIINKSADERGFGYGTVYKTEKVDL 786
Score = 434 (157.8 bits), Expect = 6.6e-167, Sum P(3) = 6.6e-167
Identities = 102/264 (38%), Positives = 154/264 (58%)
Query: 51 DKNFGKPPDKQNEFLLTLGA--PHIASFDFMLD--EG--LDLAVEDIA-------PIEFE 97
+K F PP + + L A PH+ SF+ ++D +G L+LAV+DI P
Sbjct: 12 EKRFQNPPKDMDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSG 71
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFN-KYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
G LK+ + +++P VPA + N K +P+E R+ Y + V WS + +
Sbjct: 72 RLGNKLKIRVDSVQLAKPSVPANDK-LSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDE 130
Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
+ +E G++PIMLKS RCHL L+P QL+E E DE GGYFIV G EKL+R+LI
Sbjct: 131 EEVSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQ 190
Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
RRNHP+AI R ++ NRG ++ G+ IRSV+ D+++ NVLH++ +G+ F FS RK+
Sbjct: 191 RRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEF 250
Query: 277 LLGMMQSLHEEGIHTQHDSKVFFG 300
L+ ++ L + I T +D ++F G
Sbjct: 251 LVPVVMIL-KALIET-NDREIFDG 272
Score = 315 (115.9 bits), Expect = 6.6e-167, Sum P(3) = 6.6e-167
Identities = 63/139 (45%), Positives = 86/139 (61%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG D +A ++KL DGL +G K+ E DP+ +Y+ ++ + Y E +E V+
Sbjct: 802 FGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVK 861
Query: 874 M---SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSG 930
+ S EG +T I YRI R P +GDKF+SR GQKG+CS KWP D+PFT+SG
Sbjct: 862 LLGDDSNEQEGQQIT-----IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESG 916
Query: 931 LVPDIVFNPHGFPSRMTIG 949
+ PD++ NPH FPSRMTIG
Sbjct: 917 MQPDVIINPHAFPSRMTIG 935
Score = 154 (59.3 bits), Expect = 6.2e-150, Sum P(3) = 6.2e-150
Identities = 38/109 (34%), Positives = 58/109 (53%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK-AL 823
L++GYNY+G E MYSG G ++ I+ G V+YQRLRHMV+DK+Q + P N +
Sbjct: 975 LKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRS---TGPVNSLTM 1031
Query: 824 EDKLGP--DGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMC 868
+ G G + VG ERD + + ++R + C + +C
Sbjct: 1032 QPVKGRKRSGGIRVGEM--ERDALIGHGTSFLLQDRLLNCSDYTQTPVC 1078
Score = 54 (24.1 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 154 DGKAGGTFTKEVGRVPI-MLKSKRCHLRNLTPAQLIERGEHPD----EWGGYFIVGGHEK 208
DGK G T E GR+ L+ + + + P L E G P ++ G +I GGH +
Sbjct: 565 DGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDL-EIGYVPPSNKGQYPGLYIFGGHSR 623
Query: 209 LVR 211
++R
Sbjct: 624 MMR 626
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 502 (181.8 bits), Expect = 6.3e-162, Sum P(4) = 6.3e-162
Identities = 106/241 (43%), Positives = 143/241 (59%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++ PP++Q L L H+ SF++ + EGL AV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYAVPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + L IV AAIS P VP G + N YP E R RS Y G ++W+ +G
Sbjct: 68 FKDERISLTIVDAAISPPAVPKGTICKELN-IYPAECRGRRSTYRGKLTADISWAVNGVP 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+L NL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK+RGL ++ GV I V+ + SA N LH+V NG+ F +RK +
Sbjct: 187 RNFPIAMIRPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246
Query: 278 L 278
L
Sbjct: 247 L 247
Score = 467 (169.5 bits), Expect = 6.3e-162, Sum P(4) = 6.3e-162
Identities = 109/315 (34%), Positives = 172/315 (54%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG HTQ + G+ F+ KL + N E +++ CI HL DKF
Sbjct: 285 MLRIVMEEGCHTQKQVLDYLGERFRVKLSLPDWYPN-AEAAEFLFNQCICIHLKSNTDKF 343
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------------KE 384
L MT KLF + +G D+ DS++ QE++T G L+L LK K
Sbjct: 344 YLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKR 403
Query: 385 KSGTSAVLKESDIYAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
T+ + ++ F + + LATGN+ + + L MQ SG ++A+ +N
Sbjct: 404 AQKTNVSINNENLMKIFSMGTELTRPFEYLLATGNLRS--KTGLGFMQDSGLCVVADKLN 461
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGLLNHLT C++
Sbjct: 462 FIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVV 521
Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
++++ + A IP++L LG+ P+ V+LDG +VG++ ++A + L
Sbjct: 522 TKFVYT---ASIPALLCGLGVTPVDAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTL 578
Query: 563 RMLKIVGEKIPKSLE 577
R K++ E+ SL+
Sbjct: 579 RRFKVLRERRCSSLD 593
Score = 437 (158.9 bits), Expect = 6.3e-162, Sum P(4) = 6.3e-162
Identities = 86/137 (62%), Positives = 103/137 (75%)
Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
+AN IP D NQSPRNMYQCQMGKQTMG P L ++ + KLYRLQTP SP RP YD
Sbjct: 670 IANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDH 729
Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L + G
Sbjct: 730 YDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQ-G 788
Query: 774 TETMYSGV---DGSMMQ 787
+++ GV D +MQ
Sbjct: 789 DDSLVFGVKPGDPRVMQ 805
Score = 354 (129.7 bits), Expect = 6.3e-162, Sum P(4) = 6.3e-162
Identities = 72/151 (47%), Positives = 93/151 (61%)
Query: 804 VSDKWQTKD---YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
+S+K++ D FG P + + KL DGL ++GAKL DP Y Y +
Sbjct: 781 LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVY 840
Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
Y KE V+ +++ S T G C + R+ RNPT+GDKFASR GQKGI S WP
Sbjct: 841 YKSKENCVVDNIKVCSNDTGSGKF--KCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 921 AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
AED+PFT+SG++PDI+FNPHGFPSRMTIG L
Sbjct: 899 AEDMPFTESGMMPDILFNPHGFPSRMTIGML 929
Score = 180 (68.4 bits), Expect = 1.2e-143, Sum P(4) = 1.2e-143
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 969 AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 1029 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Score = 39 (18.8 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 479 ICPVHTPDGTPCGLLNHLTTNCQ 501
I P P GT C LN C+
Sbjct: 82 ISPPAVPKGTICKELNIYPAECR 104
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 502 (181.8 bits), Expect = 6.3e-162, Sum P(4) = 6.3e-162
Identities = 106/241 (43%), Positives = 143/241 (59%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++ PP++Q L L H+ SF++ + EGL AV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYAVPPEQQKAALQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + L IV AAIS P VP G + N YP E R RS Y G ++W+ +G
Sbjct: 68 FKDERISLTIVDAAISPPAVPKGTICKELN-IYPAECRGRRSTYRGKLTADISWAVNGVP 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+L NL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK+RGL ++ GV I V+ + SA N LH+V NG+ F +RK +
Sbjct: 187 RNFPIAMIRPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFF 246
Query: 278 L 278
L
Sbjct: 247 L 247
Score = 467 (169.5 bits), Expect = 6.3e-162, Sum P(4) = 6.3e-162
Identities = 109/315 (34%), Positives = 172/315 (54%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG HTQ + G+ F+ KL + N E +++ CI HL DKF
Sbjct: 285 MLRIVMEEGCHTQKQVLDYLGERFRVKLSLPDWYPN-AEAAEFLFNQCICIHLKSNTDKF 343
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK---------------KE 384
L MT KLF + +G D+ DS++ QE++T G L+L LK K
Sbjct: 344 YLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFLMFLKEKMENWLLSIKIALDKR 403
Query: 385 KSGTSAVLKESDIYAAFR-ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
T+ + ++ F + + LATGN+ + + L MQ SG ++A+ +N
Sbjct: 404 AQKTNVSINNENLMKIFSMGTELTRPFEYLLATGNLRS--KTGLGFMQDSGLCVVADKLN 461
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGLLNHLT C++
Sbjct: 462 FIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVV 521
Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
++++ + A IP++L LG+ P+ V+LDG +VG++ ++A + L
Sbjct: 522 TKFVYT---ASIPALLCGLGVTPVDAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTL 578
Query: 563 RMLKIVGEKIPKSLE 577
R K++ E+ SL+
Sbjct: 579 RRFKVLRERRCSSLD 593
Score = 437 (158.9 bits), Expect = 6.3e-162, Sum P(4) = 6.3e-162
Identities = 86/137 (62%), Positives = 103/137 (75%)
Query: 654 LANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDT 713
+AN IP D NQSPRNMYQCQMGKQTMG P L ++ + KLYRLQTP SP RP YD
Sbjct: 670 IANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDH 729
Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYG 773
DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+ERGFAHG ++KS FI+L + G
Sbjct: 730 YDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQ-G 788
Query: 774 TETMYSGV---DGSMMQ 787
+++ GV D +MQ
Sbjct: 789 DDSLVFGVKPGDPRVMQ 805
Score = 354 (129.7 bits), Expect = 6.3e-162, Sum P(4) = 6.3e-162
Identities = 72/151 (47%), Positives = 93/151 (61%)
Query: 804 VSDKWQTKD---YFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
+S+K++ D FG P + + KL DGL ++GAKL DP Y Y +
Sbjct: 781 LSEKFKQGDDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGYLNLNTGEGFVVY 840
Query: 861 YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWP 920
Y KE V+ +++ S T G C + R+ RNPT+GDKFASR GQKGI S WP
Sbjct: 841 YKSKENCVVDNIKVCSNDTGSGKF--KCVCVTVRVPRNPTIGDKFASRHGQKGILSRLWP 898
Query: 921 AEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
AED+PFT+SG++PDI+FNPHGFPSRMTIG L
Sbjct: 899 AEDMPFTESGMMPDILFNPHGFPSRMTIGML 929
Score = 180 (68.4 bits), Expect = 1.2e-143, Sum P(4) = 1.2e-143
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 969 AGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQPIGG 1028
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 1029 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 1082
Score = 39 (18.8 bits), Expect = 2.9e-68, Sum P(3) = 2.9e-68
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 479 ICPVHTPDGTPCGLLNHLTTNCQ 501
I P P GT C LN C+
Sbjct: 82 ISPPAVPKGTICKELNIYPAECR 104
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 920 (328.9 bits), Expect = 8.6e-161, Sum P(3) = 8.6e-161
Identities = 209/489 (42%), Positives = 291/489 (59%)
Query: 315 NEVEICDYMLTNCILPHL--DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMT 372
+++E+ +L +L HL D DKF L M KL+ +V G D+ D+ QE++
Sbjct: 345 SDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLL 404
Query: 373 GGSLYLQLLKKE----------------KSGTSAVLKESDIYAA--FRAS-SIESAMTNF 413
GG LY +LK++ G + K+ + R + +I S M F
Sbjct: 405 GGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYF 464
Query: 414 LATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRT 473
L+TGN+ + S L L Q SG+ ++AE IN R++SHFR VHRGS+F +++++ R+L
Sbjct: 465 LSTGNLVS--QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLP 522
Query: 474 DAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSI 533
++WGF+CPVHTPDG+PCGLLNH C+IS S V ++IPS+L SLG+ P + +
Sbjct: 523 ESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQ-QSDV-SRIPSILYSLGVAPASHTFAAG 580
Query: 534 PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK--IPKSLEIVYLKRPEKGMGLY 591
P V +DG+I+G++ + + LR K+ G+ +P LEI Y+ P G Y
Sbjct: 581 PSLCC-VQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYV--PPSTRGQY 637
Query: 592 PGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFL 651
PGLYLF G RMLRPV L + +G FEQV+M+I +T +E + TH E + T+ L
Sbjct: 638 PGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNIL 697
Query: 652 SNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHY 711
S LANL P D NQSPRNMYQCQMGKQTMGTP + ++ KLYRLQT +P + Y
Sbjct: 698 SILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLY 757
Query: 712 DTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNY 771
D MDNFP G NA+VAVISYTGYDM+DAMI+NKS+ ERGF +G ++K+ ++L N
Sbjct: 758 DDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNR 817
Query: 772 YGTETMYSG 780
T + G
Sbjct: 818 GDPITQHFG 826
Score = 379 (138.5 bits), Expect = 8.6e-161, Sum P(3) = 8.6e-161
Identities = 90/240 (37%), Positives = 138/240 (57%)
Query: 65 LLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIY-GKTLKLNIVKAAISEPKVPAGPVG 123
LL LG I + ++ +G L ED I Y G L +++ + +I++P G
Sbjct: 60 LLNLGVKDIG--EKVIFDGKPLNSED--EISNSGYLGNKLSVSVEQVSIAKPMSNDGVSS 115
Query: 124 IHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF-TKEVGRVPIMLKSKRCHLRNL 182
K YP+E+RQ + Y G + + WS + F ++ G +P+ML+S RCHL +
Sbjct: 116 AVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKM 175
Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVY 242
+P +L++ E DE GGYFIV G EKL+R+LI RRNHP+AI R ++ NRG +S G+
Sbjct: 176 SPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQ 235
Query: 243 IRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQI 302
IRSV+ D+++ NVLH++ +G F FS RK+ L+ ++ L + HT D ++F G I
Sbjct: 236 IRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMIL-KALCHTS-DREIFDGII 293
Score = 304 (112.1 bits), Expect = 8.6e-161, Sum P(3) = 8.6e-161
Identities = 63/140 (45%), Positives = 87/140 (62%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG D K +KL DGL Y+G + E DP+ +Y+ ++ N+ Y E +E V
Sbjct: 827 FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVN 886
Query: 874 M----SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
+ S+ F E +V+ I YRI+R P +GDKF+SR GQKG+CS KWP D+PF+++
Sbjct: 887 LIGDESNKFQELQTVS-----IKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSET 941
Query: 930 GLVPDIVFNPHGFPSRMTIG 949
G+ PDI+ NPH FPSRMTIG
Sbjct: 942 GIQPDIIINPHAFPSRMTIG 961
Score = 157 (60.3 bits), Expect = 2.7e-145, Sum P(3) = 2.7e-145
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
++GYNY+G E MYSG G ++A I+ GVV+YQRLRHMV+DK+Q +
Sbjct: 1002 KAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVR 1047
Score = 47 (21.6 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLI--ERGEHPD----EWGGYFIVGGHE 207
DGK G + E G++ I + + TP I E G P ++ G ++ GGH
Sbjct: 589 DGKIIGWVSHEQGKI-IADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHS 647
Query: 208 KLVR 211
+++R
Sbjct: 648 RMLR 651
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 905 (323.6 bits), Expect = 1.4e-160, Sum P(3) = 1.4e-160
Identities = 186/374 (49%), Positives = 254/374 (67%)
Query: 404 SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEM 463
+ I + + FL+TGN+ + N+ L L QA+G+ ++AE +N R++SHFR VHRG++F E+
Sbjct: 431 NDIGTKLQYFLSTGNLVS--NTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAEL 488
Query: 464 RSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGM 523
+++ R+L +AWGF+CPVHTPDG+PCGLLNHL C+I + PS V +QIPS+L+SLG+
Sbjct: 489 KTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTH-PSDV-SQIPSLLLSLGV 546
Query: 524 LPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV-------GE-----K 571
P P + V LDG+IVG+ ++A + LR++KI G K
Sbjct: 547 DP--PSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAK 604
Query: 572 IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICIT 631
+P LEI Y+ P G YPGLYLF+ P RM+RPV +++ G ++ +G FEQV+MDI
Sbjct: 605 VPLDLEIGYV--PPSHNGQYPGLYLFSNPARMVRPVKHISTGELDMLGPFEQVYMDIACF 662
Query: 632 MKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQG 691
KE P ++TH E S T+ LS +AN+ P D NQSPRNMYQCQMGKQTMGTP RY+
Sbjct: 663 PKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRT 722
Query: 692 VGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERG 751
KLYRLQT +P RP ++T +D++P GTNA+VAVISYTGYDMEDAMILNKS++ERG
Sbjct: 723 DNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAHERG 782
Query: 752 FAHGCIFKSMFIEL 765
F +G ++K +L
Sbjct: 783 FGYGTVYKGESFDL 796
Score = 384 (140.2 bits), Expect = 1.4e-160, Sum P(3) = 1.4e-160
Identities = 92/269 (34%), Positives = 143/269 (53%)
Query: 51 DKNFGKPPDKQNEF--LLTLGAPHIASFDFMLDEGL-DLAVEDIAP-IEFEI-------- 98
++ F PP F L PH+ SF+ + + GL + AV++I F+
Sbjct: 9 ERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGA 68
Query: 99 --YGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGK 156
+G + + + I++P + + K YP EAR+ + Y + +WS +G
Sbjct: 69 LKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGG 128
Query: 157 AGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINN 216
+ +EVG +PIM++S RCHL L+PA+LI E +E GGYFIV G EKL+R+LI
Sbjct: 129 PRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILP 188
Query: 217 RRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMC 276
+RNHP AI R ++ NRG +S G+ IR V+ D+S+ N LH++ NG F F RK+
Sbjct: 189 KRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEY 248
Query: 277 LLGMMQSLHEEGIHTQHDSKVFFGQIFKE 305
L+ M L + + D ++F G + K+
Sbjct: 249 LIPSMMIL--KALLETSDKEIFEGIVGKD 275
Score = 312 (114.9 bits), Expect = 1.4e-160, Sum P(3) = 1.4e-160
Identities = 65/135 (48%), Positives = 85/135 (62%)
Query: 815 GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRM 874
G P + L+ KL DGL ++G KL + DP+ +Y+ ES + Y G E V+ VR+
Sbjct: 815 GSTPRREWLQ-KLDADGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRL 873
Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
G G S ++ RI R+P +GDKF+SR GQKGICS KWP D+PFT+SG+ PD
Sbjct: 874 L-GNDVGDSECQQI-HVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPD 931
Query: 935 IVFNPHGFPSRMTIG 949
I+ NPH FPSRMTIG
Sbjct: 932 IIINPHAFPSRMTIG 946
Score = 180 (68.4 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 72/304 (23%), Positives = 143/304 (47%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M+++ G+++Q ++ + G F+ L L +VE+ ++L +L HL + DKF
Sbjct: 288 MLRAYKSYGLYSQTETLQYLGSKFRVVLGV-AEDLTDVEVGRFLLQKVVLVHLREAKDKF 346
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-KSGTSAVLKESDIY 398
L M KL+ +V G D+ DS QEI+ GG LY Q+LK++ + +++ + ++
Sbjct: 347 RLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLD 406
Query: 399 AAFRASSIESAMTNFLAT--GNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR 456
A ++ + +L ++ + LQ ++G ++ ++ + + +
Sbjct: 407 VRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEK 466
Query: 457 GSYFQEM-------RSSEPRQLRTDAWGFICP----VHTPDGTPCGLLNHLTTN-CQISE 504
++++ + R + +L+T + P P TP G L + + E
Sbjct: 467 LNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCE 526
Query: 505 YIPSKV-LAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLR 563
+ ++QIPS+L+SLG+ P P + V LDG+IVG+ ++A + LR
Sbjct: 527 IVTHPSDVSQIPSLLLSLGVDP--PSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLR 584
Query: 564 MLKI 567
++KI
Sbjct: 585 LMKI 588
Score = 168 (64.2 bits), Expect = 2.1e-145, Sum P(3) = 2.1e-145
Identities = 29/47 (61%), Positives = 39/47 (82%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
+++GYNY+G E MYSG+ G M+A I+ GVV+YQRLRHMVSDK+Q +
Sbjct: 986 VKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVR 1032
Score = 39 (18.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 20 RHIHEVLLVFKVLKMI-LNQNTLSAPSLKNLTDKNFGKPPDKQN 62
+H+ +VL + K+ + L T + P+ L D G P N
Sbjct: 577 KHVADVLRLMKIEYAVKLRNGTATEPAKVPL-DLEIGYVPPSHN 619
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 896 (320.5 bits), Expect = 8.6e-154, Sum P(4) = 8.6e-154
Identities = 201/467 (43%), Positives = 278/467 (59%)
Query: 324 LTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK 383
L N + DY DKF L M KL+ +V G D+ D++ QEI+ GG LY LLK+
Sbjct: 365 LGNQNVTETQDY-DKFKMLMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLKE 423
Query: 384 EKS----GTSAVLK----------------ESDIYA-AFRASS--IESAMTNFLATGNVS 420
+L+ E D + R S+ I AM FL+TGN+
Sbjct: 424 RLDEWVRSFGPILRDWSNRNHGARFTDPAFERDFVSKVIRRSNENIGGAMEYFLSTGNLV 483
Query: 421 AGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFIC 480
+ L L Q SG+ +MAE IN R++SHFR +HRGS+F +++++ R+L ++WGF+C
Sbjct: 484 SPTG--LDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLC 541
Query: 481 PVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMV 540
PVHTPDG+PCGLLNHL C ++ ++ +P +LV LG+ + V S+ E ++ V
Sbjct: 542 PVHTPDGSPCGLLNHLAHKCLVAT--SDTDVSHLPKLLVQLGVRNESSV--SLDE-SVTV 596
Query: 541 MLDGRIVGYILDQIATSLVPKLRMLKIVG-EKIPKSLEIVYLKRPEKGMGLYPGLYLFTG 599
LDGRI+GY + A + LR K+ G +P LEI Y+ P G YPG+Y+F+
Sbjct: 597 QLDGRIIGYCSPKQARVIASTLRHWKVSGTNNVPLGLEIGYV--PNSNGGQYPGIYMFSQ 654
Query: 600 PGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIP 659
RM RPV L ++++G FEQ FM+I + G++TH E + T+ LS +AN+ P
Sbjct: 655 AARMYRPVKYLPLDKLDYVGPFEQPFMEIACLPSDLVKGLSTHIEFTPTNILSIVANMTP 714
Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
D NQSPRNMYQCQM KQTMGTP Y+ KLYRLQT +P RP Y+ +DNF
Sbjct: 715 FSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNF 774
Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELE 766
P GTNA+VA+ISYTGYDM+DAMI+NKSS+ERGF +G ++K+ L+
Sbjct: 775 PNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTVYKTKVHSLD 821
Score = 357 (130.7 bits), Expect = 8.6e-154, Sum P(4) = 8.6e-154
Identities = 72/199 (36%), Positives = 120/199 (60%)
Query: 103 LKLNIVKAAISEPKVPAGPVGIHFNK-YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTF 161
L + I + + +P +P N+ YP+E R+ + Y G + + +
Sbjct: 96 LHVRIKEVFLEKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRVNNGDWTEQ 155
Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHP 221
+E+G+VPIML++ RC+L TPA+L++ E +E GGYFIV G+EKL+R+LI RRN+P
Sbjct: 156 VRELGQVPIMLRTNRCYLEKATPAELVQHKEESEELGGYFIVNGNEKLIRMLIVGRRNYP 215
Query: 222 IAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLLGMM 281
+AI RN + NRG +S G+ IRSV+ D+++ NVLH++ +G+ F FS RK+ ++ ++
Sbjct: 216 MAIVRNTFTNRGHAYSKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEYIIPVV 275
Query: 282 QSLHEEGIHTQHDSKVFFG 300
L + + +D ++F G
Sbjct: 276 MIL--KALVETNDREIFEG 292
Score = 250 (93.1 bits), Expect = 8.6e-154, Sum P(4) = 8.6e-154
Identities = 54/156 (34%), Positives = 85/156 (54%)
Query: 807 KWQTKDYFGRDPANKALED---KLGPDGLVYVGAKLNERDPMYSY----WKESENRYVTC 859
K + FG P ++ + L DG ++GA++ E + +Y + + + Y+
Sbjct: 831 KQAVQKLFGFAPGSEIRAEWRATLDEDGFPHIGAEIKEGSIVAAYHTVRYDATSDSYINV 890
Query: 860 -------RYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
+Y E ++ +R+ +E G+ + YRI R P +GDKF+SR GQK
Sbjct: 891 DGITHFVKYKDSERAYIDSIRIMG--SETGTEPAQAISVKYRIPRKPIIGDKFSSRHGQK 948
Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTI 948
G+CS WPA D+PF++SG+ PD++ NPH FPSRMTI
Sbjct: 949 GVCSQLWPAVDMPFSESGIQPDLIINPHAFPSRMTI 984
Score = 173 (66.0 bits), Expect = 1.1e-145, Sum P(4) = 1.1e-145
Identities = 54/171 (31%), Positives = 76/171 (44%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK 826
+GYNYYG E +YSG+ G A IF GVVHYQRLRHMV+DK+Q + P N
Sbjct: 1027 AGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVRT---TGPVNNLTGQP 1083
Query: 827 L---GPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTEG 881
+ G + VG ERD + ++ ++R + C S + +C R F
Sbjct: 1084 VKGRAKGGGIRVGEM--ERDSLIAHGAAYILQDRLMNCSDSQRAWIC----RDCGSFLST 1137
Query: 882 GSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLV 932
+ R+ + G A+ G GI + A + F DS V
Sbjct: 1138 QVAVSSAGSSKARMAAKNSSGS--AALGGNAGIVRCRRCAREAVFDDSRAV 1186
Score = 121 (47.7 bits), Expect = 9.3e-57, Sum P(4) = 9.3e-57
Identities = 37/103 (35%), Positives = 51/103 (49%)
Query: 289 IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL--------DDYWDKFL 340
+H++ + + F G+ FK L NE E L +LPHL DY DKF
Sbjct: 323 LHSRSECRAFIGEKFKPVLGVPADTPNE-EAGTEFLRKVVLPHLGNQNVTETQDY-DKFK 380
Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK 383
L M KL+ +V G D+ D++ QEI+ GG LY LLK+
Sbjct: 381 MLMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMLLKE 423
Score = 45 (20.9 bits), Expect = 8.6e-154, Sum P(4) = 8.6e-154
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 54 FGKPPDKQNEF--LLTLGAPHIASFDFMLDEG--LDLAVEDIAPIEF 96
F PP + + L PH+ SF+ + ++G ++ ++DI F
Sbjct: 23 FRNPPQDKTAYPSLAESIKPHVDSFNALFEKGGIIEAGLKDIGTRTF 69
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 619 (223.0 bits), Expect = 3.7e-151, Sum P(4) = 3.7e-151
Identities = 122/212 (57%), Positives = 151/212 (71%)
Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDIC 629
++IP +E+V + K LYPGL+LFT P R++RPV NLA G E IGT EQ+FM++
Sbjct: 404 KRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVA 462
Query: 630 ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRY 689
I E + G+TTH+EL LS +AN IP D NQSPRNMYQCQMGKQTMG P L ++
Sbjct: 463 IFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQD 522
Query: 690 QGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
+ KLYRLQTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAMI+NK+S+E
Sbjct: 523 RSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWE 582
Query: 750 RGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
RGFAHG ++KS FI+L G ++ G+
Sbjct: 583 RGFAHGSVYKSEFIDLSEKIKQ-GDSSLVFGI 613
Score = 485 (175.8 bits), Expect = 3.7e-151, Sum P(4) = 3.7e-151
Identities = 102/241 (42%), Positives = 141/241 (58%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL LAV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + I+ A IS P VP G + N YP E R RS Y G + W+ +G +
Sbjct: 68 FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNR 217
G + +G VPIM+KSK C+LRNL P LIE E +E GGYFI+ G EK++R+LI R
Sbjct: 127 KGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 218 RNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRKSMCL 277
RN PIA+ R WK RG ++ GV + V+ + SA N LH++ NG+ F +RK +
Sbjct: 187 RNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFF 246
Query: 278 L 278
L
Sbjct: 247 L 247
Score = 361 (132.1 bits), Expect = 3.7e-151, Sum P(4) = 3.7e-151
Identities = 72/138 (52%), Positives = 87/138 (63%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + + KL DGL ++GAKL DP YSY + Y KE V+ ++
Sbjct: 611 FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIK 670
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ S T G C I R+ RNPT+GDKFASR GQKGI S WPAED+PFT+SG+VP
Sbjct: 671 VCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 728
Query: 934 DIVFNPHGFPSRMTIGFL 951
DI+FNPHGFPSRMTIG L
Sbjct: 729 DILFNPHGFPSRMTIGML 746
Score = 178 (67.7 bits), Expect = 6.3e-132, Sum P(4) = 6.3e-132
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 786 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 845
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 846 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 899
Score = 155 (59.6 bits), Expect = 3.7e-151, Sum P(4) = 3.7e-151
Identities = 36/103 (34%), Positives = 56/103 (54%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG TQ + G+ F+ KL + NE + +++ CI HL +KF
Sbjct: 285 MLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKF 343
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
L MT KLF + +G D+ DS++ QE++T G L+L LK
Sbjct: 344 YMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLK 386
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 1070 (381.7 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 227/520 (43%), Positives = 320/520 (61%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
M++ + EEG TQ + G+ F+ KL + NE + +++ CI HL +KF
Sbjct: 74 MLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNE-QAAEFLFNQCICIHLKSNTEKF 132
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSG------------ 387
L MT KLF + +G D+ DS++ QE++T G L+L LK++ G
Sbjct: 133 YMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKK 192
Query: 388 ---TSAVLKESDIYAAFRAS-SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
TS + ++ F + ATGN+ + + L L+Q SG ++A+ +N
Sbjct: 193 AQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS--KTGLGLLQDSGLCVVADKLN 250
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQI- 502
+RY+SHFR VHRG+ F +MR++ R+L ++WGF+CPVHTPDG PCGL+NHLT C++
Sbjct: 251 FIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVV 310
Query: 503 SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKL 562
++++ + A IP++L +LG+ P+ + V+LDG +VG++ +A + L
Sbjct: 311 TQFVYT---ASIPALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSL 367
Query: 563 RMLKIVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTF 621
R K++ EK IP +E+V + K LYPGL+LFT P R++RPV NLA G E IGT
Sbjct: 368 RHFKVLREKRIPPWMEVVLIPMTGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTM 426
Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
EQ+FM++ I E + G+TTH+EL LS +AN IP D NQSPRNMYQCQMGKQTMG
Sbjct: 427 EQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMG 486
Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
P L ++ + KLYRLQTP SP RP YD DMDN+P+GTNAIVAVISYTGYDMEDAM
Sbjct: 487 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAM 546
Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
I+NK+S+ERGFAHG ++KS FI+L G ++ G+
Sbjct: 547 IVNKASWERGFAHGSVYKSEFIDLSEKIKQ-GDSSLVFGI 585
Score = 361 (132.1 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 72/138 (52%), Positives = 87/138 (63%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + + KL DGL ++GAKL DP YSY + Y KE V+ ++
Sbjct: 583 FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIK 642
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ S T G C I R+ RNPT+GDKFASR GQKGI S WPAED+PFT+SG+VP
Sbjct: 643 VCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 700
Query: 934 DIVFNPHGFPSRMTIGFL 951
DI+FNPHGFPSRMTIG L
Sbjct: 701 DILFNPHGFPSRMTIGML 718
Score = 178 (67.7 bits), Expect = 6.4e-130, Sum P(3) = 6.4e-130
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPA-NKALED 825
+GYN+YGTE +YSG+ G ++A IF GVV+YQRLRHMVSDK+Q + RD N+ +
Sbjct: 758 AGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGG 817
Query: 826 KLGPDGLVYVGAKLNERDPMYSYWKES--ENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+ G+ + G ERD + ++ +R C +CV+ + S E
Sbjct: 818 RNVQGGIRF-GEM--ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLE 871
Score = 62 (26.9 bits), Expect = 3.4e-149, Sum P(3) = 3.4e-149
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 246 VKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
V+ + SA N LH++ NG+ F +RK + L
Sbjct: 4 VREEHSAVNMNLHYLENGTVMLNFIYRKELFFL 36
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 1027 (366.6 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 221/523 (42%), Positives = 315/523 (60%)
Query: 276 CLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDY 335
C+ M++++ E G +TQ + + G+ F+ KL + NE + D++ CI HL D
Sbjct: 169 CVTEMLRAVAEAGCYTQQNVLEYLGKSFRVKLNLPEWYSNE-QAADFIFNKCICIHLTDR 227
Query: 336 WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKK------------ 383
+KF L MT KL +G D+ DS+M QE++T G L+L LK+
Sbjct: 228 TEKFYLLCMMTRKLCAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERLENWLQSVKFV 287
Query: 384 -EKSGTSAVLK-ESD-IYAAFRASS-IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMA 439
EK A + +D + AF ++ + + LATGN+ + + L ++Q SG ++
Sbjct: 288 LEKRTEKADININADSLMKAFNMTTDVTKSFEYLLATGNLRS--KTGLGMLQDSGLCVVG 345
Query: 440 ENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTN 499
+ +N +RY+SHFR +HRGS F +MR++ R+L ++WGF+CPV TPDG PCGL+NH+T
Sbjct: 346 DKLNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAV 405
Query: 500 CQI-SEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
C+I +E +P + +P +L +LG++P+ + V+LDG +VG++ +A +
Sbjct: 406 CEIVTEMVP---VTDLPPLLCALGVVPIDATPSRPYAECYRVLLDGAVVGWVEWDLAPQV 462
Query: 559 VPKLRMLK--IVGEK-IPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNI 615
LR K I EK P E+V + K LYPGL++FT P RM+RPV NL G
Sbjct: 463 AEALRRFKKQITQEKRFPSRAEVVLIPMTGKP-SLYPGLFIFTTPCRMVRPVKNLLYGRK 521
Query: 616 EWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
EWIGT EQVFM++ + PG+TTH+EL LS +ANLIP D NQSPRNMYQCQM
Sbjct: 522 EWIGTLEQVFMNVATMESDVMPGVTTHQELFPHSILSVVANLIPFSDHNQSPRNMYQCQM 581
Query: 676 GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGY 735
GKQTMG P N++ + KLY L TP SP RP YD MD++P+GTN++VAVISY+GY
Sbjct: 582 GKQTMGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGY 641
Query: 736 DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMY 778
DMEDAMI+NKSS+ERGFA+G + K I+L N G ++
Sbjct: 642 DMEDAMIVNKSSWERGFAYGSVIKMESIDLSLKANRGGDNLVF 684
Score = 306 (112.8 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 68/171 (39%), Positives = 104/171 (60%)
Query: 145 FNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVG 204
F V ++WS + GT VG VPIM+KSK C+L NL+P +LI+ E +E GGYFI+
Sbjct: 2 FQVDISWSVNDIPQGTIKHPVGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIIN 61
Query: 205 GHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS 264
G EK++R+LI RRN P+A+ R+ WKNRG F++ GV + VK + SA N LH++ NG
Sbjct: 62 GLEKVIRMLIMPRRNFPLAMTRHKWKNRGPGFTEYGVVMHCVKDEHSAINMNLHYLENGC 121
Query: 265 ARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLN 315
F +K + L + +L + + D ++F ++ K+K + D ++N
Sbjct: 122 VMVNFIFQKELFFLPLGFAL--KALVNFTDYQIF-EELVKDK-KNDTFYVN 168
Score = 99 (39.9 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + +++KL DGL +VG+ L DP YSY + T Y KE V+ ++
Sbjct: 684 FGIRPGDPNVKEKLDADGLPFVGSILQPGDPFYSYMNLNTGETFTVYYQNKEVGIVDNIK 743
Query: 874 MSS 876
+ S
Sbjct: 744 LCS 746
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 782 (280.3 bits), Expect = 5.0e-133, Sum P(4) = 5.0e-133
Identities = 168/377 (44%), Positives = 233/377 (61%)
Query: 405 SIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMR 464
SI +++ L TG + S L L Q +G+ + AE +N +R++S FRAVHRG+ F +R
Sbjct: 427 SIGTSIETLLKTGALKT--QSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLR 484
Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK--------VLAQIPS 516
++ R+L ++WGF+CPVHTPDGTPCGLLNH+T +I+ SK + +
Sbjct: 485 TTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVD 544
Query: 517 VLVSLGMLPLTP-VIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPK 574
VL GM+P P ++++ P + + V+LDG++VG + + T +V +R LK+ IP+
Sbjct: 545 VLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPE 604
Query: 575 SLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLA--AGNIEWIGTFEQVFMDI-CIT 631
LE+ Y+ P G YPGLYL + P R +RPV N++ + NIE IG FEQVFM+I C
Sbjct: 605 DLEVGYV--PTSMGGSYPGLYLASCPARFIRPVKNISIPSDNIELIGPFEQVFMEISCPD 662
Query: 632 MKEA---YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWR 688
+ TH E+ T +S +ANL P D NQSPRNMYQCQM KQTM +
Sbjct: 663 GGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQ 722
Query: 689 YQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSY 748
++ K+Y LQTP SP R Y T +D P GTNAIVAV+++TG+DMEDAMILNKSS
Sbjct: 723 FRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSV 782
Query: 749 ERGFAHGCIFKSMFIEL 765
ERG HG I+++ I+L
Sbjct: 783 ERGMCHGQIYQTENIDL 799
Score = 249 (92.7 bits), Expect = 5.0e-133, Sum P(4) = 5.0e-133
Identities = 56/137 (40%), Positives = 76/137 (55%)
Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
R NKA ++ DGL VG KL +P S + E N+ + G + + V+ V +
Sbjct: 814 RRSTNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVD 873
Query: 876 SGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTD-SGLVPD 934
+ P A I +R RNP +GDKF+SR GQKG+CS WP D+PF +G+ PD
Sbjct: 874 MKSKKH----PQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPD 929
Query: 935 IVFNPHGFPSRMTIGFL 951
++ NPH FPSRMTI L
Sbjct: 930 LIINPHAFPSRMTIAML 946
Score = 249 (92.7 bits), Expect = 5.0e-133, Sum P(4) = 5.0e-133
Identities = 67/204 (32%), Positives = 104/204 (50%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNK--- 128
HI SFD+M +GLD+ I P+ +Y + N + + P V A P F
Sbjct: 26 HIESFDYMTLKGLDVMFNRIKPVS--VYDPNTE-NELSIWLENPLVFA-PQKESFKSTSR 81
Query: 129 ---YYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPA 185
P E RQ + Y+G F V + ++ + G+ PIML SK C L+
Sbjct: 82 KEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCR 141
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRS 245
+L++ E E GGYFI+ G E++ R +I +RNHP ++ RN++++R +S V R
Sbjct: 142 KLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRC 201
Query: 246 VKRDESATNNVLHFVTNGSARFMF 269
V+ D+S+ L+++ NGSAR F
Sbjct: 202 VRDDQSSVTVKLYYLRNGSARVGF 225
Score = 157 (60.3 bits), Expect = 2.3e-123, Sum P(4) = 2.3e-123
Identities = 28/46 (60%), Positives = 37/46 (80%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
E G+N+YGTET+YSG G ++ +IF G V+YQRLRHMVSDK+Q +
Sbjct: 995 EKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 1040
Score = 91 (37.1 bits), Expect = 5.0e-133, Sum P(4) = 5.0e-133
Identities = 27/106 (25%), Positives = 52/106 (49%)
Query: 280 MMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
++ + + G+ T+ + GQ F+ L + + + + +L + + HLD+ DKF
Sbjct: 282 ILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSI-VAEAVLRDYLFVHLDNDHDKF 340
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEK 385
L + KL+ +V D+ DS+ QEI+ G + + + KEK
Sbjct: 341 NLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHV-ITIYLKEK 385
Score = 45 (20.9 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 23/94 (24%), Positives = 36/94 (38%)
Query: 815 GRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEV--- 871
GR+ ++ A +++ P G++ V A L P + + N Y C+ + K+ M
Sbjct: 667 GRNNSSLATHEEIHPTGMISVVANLT---PWSDHNQSPRNMY-QCQMA-KQTMAYSTQAL 721
Query: 872 -VRMSSGF----TEGGSVTPNCAYIGYRIQRNPT 900
R T V Y Y I NPT
Sbjct: 722 QFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPT 755
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 905 (323.6 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
Identities = 190/427 (44%), Positives = 266/427 (62%)
Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
I M FLATGN+ LQ Q SGF ++AE IN++R++SHFRA+HRG++F EMR+
Sbjct: 400 ITRGMAYFLATGNLVTRVGLALQ--QESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRT 457
Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLP 525
++ R+LR +AWGFICPVHTPDG PCGLLNH+T +C+I + + +PS+L LGM
Sbjct: 458 TDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDN--SNVPSLLAELGMYT 515
Query: 526 LTPVIQSIP-EQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGE-KIPKSLEIVYLKR 583
V + P E+ V+++GR +GY+ A S+ LR K+ + +IP + EI ++R
Sbjct: 516 HKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRR 575
Query: 584 PEKGMGL---YPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPGIT 640
+ YPG+Y+ + GR++RPV NLA +E IGTFEQV++ + + +EA PG+T
Sbjct: 576 STDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVT 635
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
H+EL + S NLIP PD NQSPRN+YQCQMGKQTMGT W + K+YRLQ
Sbjct: 636 MHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQF 695
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFK- 759
P P + Y+ +MD +P+GTNA VAVISYTGYDMEDAM +NK+SY+RGFAHG + K
Sbjct: 696 PQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKV 755
Query: 760 ---SMFIELESGYNYYGT---ETMYSGVDGSMMQAQIFF-GVVHYQRLRHMVSDKWQTKD 812
++ E E +Y E G DG + + +F V+Y +M + ++T
Sbjct: 756 ERINLVTERERKTIFYRNPREEIKTVGPDGLPIPGRRYFLDEVYYVTF-NMETGDFRTHK 814
Query: 813 YFGRDPA 819
+ +PA
Sbjct: 815 FHYAEPA 821
Score = 468 (169.8 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
Identities = 111/329 (33%), Positives = 180/329 (54%)
Query: 274 SMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHL-NEVEICDYMLTNCILPHL 332
S C+L M+ EE I Q + G F+ + + +++E +++ C+L HL
Sbjct: 249 SSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHL 308
Query: 333 DDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVL 392
D +KF L++MT KL +V+G ++ D+ QE G + L +L++ ++
Sbjct: 309 DSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMV 368
Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNST----------------LQLMQASGFV 436
+ Y + R I ++ A GN + G+ + L L Q SGF
Sbjct: 369 RRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFS 428
Query: 437 IMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHL 496
++AE IN++R++SHFRA+HRG++F EMR+++ R+LR +AWGFICPVHTPDG PCGLLNH+
Sbjct: 429 VIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHV 488
Query: 497 TTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIP-EQALMVMLDGRIVGYILDQIA 555
T +C+I + + +PS+L LGM V + P E+ V+++GR +GY+ A
Sbjct: 489 TASCRIVTDLSDN--SNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKA 546
Query: 556 TSLVPKLRMLKIVGE-KIPKSLEIVYLKR 583
S+ LR K+ + +IP + EI ++R
Sbjct: 547 ASIERYLRCAKVAKDARIPYTSEIALVRR 575
Score = 345 (126.5 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
Identities = 75/212 (35%), Positives = 116/212 (54%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIY-GKTLKLNIVKAAISEPKVPAGP-VGIHFNKY 129
H+ SFDF++ +G A + + +F + G + + A + +P + G +
Sbjct: 9 HVDSFDFLVSKGCQFAAQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLPL 68
Query: 130 YPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIE 189
P E RQ Y+G V + +G +G+VPIML+S+ CHLR ++ +L+
Sbjct: 69 LPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVV 128
Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRD 249
GE P E GGYFIV G EK++RLLI NRRN PIAI R +K +G LFS+ GV +RSVK +
Sbjct: 129 AGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKEN 188
Query: 250 ESATNNVLHFVTNGSARFMFSHRKSMCLLGMM 281
+A LH++ G+ + R+ + + +M
Sbjct: 189 HTAVMMTLHYLDTGTMQLALQFRREIFYVPLM 220
Score = 283 (104.7 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
Identities = 66/159 (41%), Positives = 96/159 (60%)
Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESE 853
V+ +R+ ++V+++ + K F R+P + +GPDGL G + + Y +
Sbjct: 752 VIKVERI-NLVTER-ERKTIFYRNPREEI--KTVGPDGLPIPGRRYFLDEVYYVTFNMET 807
Query: 854 NRYVTCRYSGKEEMCVEVVRM-SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQK 912
+ T ++ E +VR+ G EG S + A I +RI+RNP +GDKFASR GQK
Sbjct: 808 GDFRTHKFHYAEPAYCGLVRIVEQG--EGDSGAKH-ALIQWRIERNPIIGDKFASRHGQK 864
Query: 913 GICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
GI S WP E LPF+++G+VPDI+FNPHGFPSRMTIG +
Sbjct: 865 GINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMM 903
Score = 188 (71.2 bits), Expect = 1.7e-86, Sum P(3) = 1.7e-86
Identities = 33/53 (62%), Positives = 42/53 (79%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
++GYNYYG ET YSGVDG M+ QIFFG+V+YQRLRHM++DK+Q + DP
Sbjct: 942 KAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDP 994
Score = 38 (18.4 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 292 QHDSKVFFGQIFKEKLQY 309
Q + ++FFG ++ ++L++
Sbjct: 961 QMEMQIFFGIVYYQRLRH 978
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 856 (306.4 bits), Expect = 3.1e-123, Sum P(2) = 3.1e-123
Identities = 190/461 (41%), Positives = 275/461 (59%)
Query: 406 IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRS 465
I + FLATGN+ + +S + L Q SGF ++A+ +N +R++SHFR++HRG++F M++
Sbjct: 412 IADRFSYFLATGNLRS--SSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKT 469
Query: 466 SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQ--IPSVLVS 520
+ R+L ++WGF CPVHTPDG PCGLLNHL++NC ++ P+ AQ +PS L +
Sbjct: 470 TAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTLLPSFLAA 529
Query: 521 LGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK--IPKSLEI 578
GMLP+ ++ Q L + LDGR++G I + +V LR L+ +G + IPK++EI
Sbjct: 530 HGMLPID-MVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPSIPKTMEI 588
Query: 579 VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAYPG 638
Y G Y G+ LFT R +RPV+NL +G E IG EQ++M+I + E G
Sbjct: 589 SYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSGQNELIGPQEQLYMEIAVVPHEVIKG 648
Query: 639 ITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRL 698
+TTH E S T S LANL P D NQSPRNMYQCQM KQTMGTP ++ ++ KLY++
Sbjct: 649 VTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKV 708
Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
Q P + +++P G NA++AVIS TGYDMEDAMI+NKS+YERGF HG ++
Sbjct: 709 QNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVY 768
Query: 759 KSMFIELESGYNYYGTETMYSG--------------VDGSMMQAQIFF-GVVHYQRLRHM 803
K+ +I+L+ G + + + + G DG ++ G +Y +R
Sbjct: 769 KNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPFVGRLIKPGEPYYTYIRP- 827
Query: 804 VSDKWQ-TKDYFGRDPANKALEDK---LGPDGLVYVGAKLN 840
SD Q TKDY G++ A +ED GP+G +K+N
Sbjct: 828 -SDGRQVTKDYKGKEEAY--IEDVRIIFGPNGATRDPSKIN 865
Score = 376 (137.4 bits), Expect = 3.1e-123, Sum P(2) = 3.1e-123
Identities = 98/293 (33%), Positives = 151/293 (51%)
Query: 62 NEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGP 121
+E L +L PHI SFDF D G+DL ++D P+ FE K+ +S P
Sbjct: 2 SEELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVE 61
Query: 122 VGIHFNKYYPTEARQTRSVYSGPFNVTVAW----SWDGKAGGT------------FTKEV 165
I K YP E+R+T + Y+ PF + D GT F ++
Sbjct: 62 KEI---KLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDL 118
Query: 166 GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIK 225
GR+PIM+KS+ CHL ++P +LIE E E GGYFIV G+EK+VR+L+ + NHP+A+
Sbjct: 119 GRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALH 178
Query: 226 RNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHRK------SMCLLG 279
R AW NRG ++ G+ IR V+ D S+ N LH++ +G F +R+ + LL
Sbjct: 179 RKAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLK 238
Query: 280 MMQSLHEEGIH---TQHDSKVFFGQIFKEKLQYDLRH--LNEV----EICDYM 323
++ E+ I+ Q D++ F ++++ LR +N + E+ DY+
Sbjct: 239 ALKDTTEKEIYENIVQGDNENTF---LTDRVELSLREQKINNINTQEEVLDYI 288
Score = 348 (127.6 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
Identities = 88/262 (33%), Positives = 146/262 (55%)
Query: 283 SLHEE---GIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKF 339
SL E+ I+TQ + + G F+ + Q+ N ++I + + + HL +Y DK+
Sbjct: 269 SLREQKINNINTQEEVLDYIGSRFRARTQFPPSFSN-IKIGRWFINQFVFVHLPNYNDKY 327
Query: 340 LCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-----KSGTSAVLK- 393
L M KL+ +V G D+ DS QE++ G +Y +LK++ +S S VLK
Sbjct: 328 NLLILMIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKS 387
Query: 394 -ESDIYAAFRA-SSIESAMT-NFLATGNVS----AGK---NSTLQLMQASGFVIMAENIN 443
E + + +++ + NF S G +S + L Q SGF ++A+ +N
Sbjct: 388 FEDKKKSGDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLN 447
Query: 444 RMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS 503
+R++SHFR++HRG++F M+++ R+L ++WGF CPVHTPDG PCGLLNHL++NC ++
Sbjct: 448 FLRFISHFRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVT 507
Query: 504 EYIPSKVLAQIPSVLVSLGMLP 525
+ + AQ P+V + +LP
Sbjct: 508 --VDA---AQDPTVQKAQTLLP 524
Score = 314 (115.6 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
Identities = 83/231 (35%), Positives = 122/231 (52%)
Query: 732 YTGYDMEDAMILNKSSYE---RGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
Y +++ ++ K+ ++ + HGC + I + S Y + M ++ S +
Sbjct: 706 YKVQNVQKPIVHTKNQFKFRCNDYPHGC---NAVIAVISNTGYDMEDAMI--INKSAYER 760
Query: 789 QIFFGVVH---YQRLRHMVSDKWQTKDYFGRDPANKALE-DK-LGPDGLVYVGAKLNERD 843
G V+ Y L +S Q K +FGR P E DK + DGL +VG + +
Sbjct: 761 GFGHGSVYKNEYIDLDQGLSRFEQKKTFFGR-PNTVVDELDKFIDTDGLPFVGRLIKPGE 819
Query: 844 PMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTP---NCAYIGYRIQRNPT 900
P Y+Y + S+ R VT Y GKEE +E VR+ G G + P N + R RNP
Sbjct: 820 PYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFG-PNGATRDPSKINNICVKLRFNRNPV 878
Query: 901 VGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
+GDKF+SR GQKG+ S WP ++PFT+SG+ PD++ NP+ FPSRMTIG L
Sbjct: 879 IGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGML 929
Score = 147 (56.8 bits), Expect = 4.0e-72, Sum P(3) = 4.0e-72
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
++G+N +G E MYSG G + +IFFGV +YQRLRHMV DK+Q +
Sbjct: 968 KAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVR 1013
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 350 (128.3 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 89/257 (34%), Positives = 140/257 (54%)
Query: 404 SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEM 463
S+ SA+ F TGN+S+ L Q SG+VI A+ IN +R +++FRA+HRG++FQ++
Sbjct: 546 SNTSSAILFFFKTGNISS---ENLHYQQKSGWVIAADEINNLRLITNFRAIHRGTFFQDV 602
Query: 464 RSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV-LAQIPSVLVSLG 522
+ PR+L ++WGFICPVHTPDGTPCGLLNHL C I ++ I L +G
Sbjct: 603 KVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLYLKKIG 662
Query: 523 M---LPLTPVIQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKS-LE 577
+ L T I +I ++ + +++D + YI ++ V KL+ K KS E
Sbjct: 663 INVNLDDTSGIHTIYDDENIPIIVDSIPITYIGEKDFNRTVYKLKYAKNNNLFNLKSYFE 722
Query: 578 I-VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY 636
I YL P + + + T PGR++RP++NL +IE+I Q ++ + I ++
Sbjct: 723 INAYLNEPL----IMNSIIINTFPGRLIRPLLNLKTKDIEFISPSYQPYISVAINNEDVK 778
Query: 637 PGITTHRELSKTDFLSN 653
+ L K + + N
Sbjct: 779 KNNLARKLLKKKEQVVN 795
Score = 349 (127.9 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 72/140 (51%), Positives = 93/140 (66%)
Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
+I I M E P + EL +T FLS LA+L P D NQSPRN+YQCQM KQTMG LN
Sbjct: 917 NINIDMYEQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLN 976
Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
Y K+YR+ TP P Y+ +DNFP GTNA+VA+++YTGYDMEDA+I+NK+
Sbjct: 977 NVYTFTNKIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKA 1036
Query: 747 SYERGFAHGCIFKSMFIELE 766
S +RG I+K+ FI+L+
Sbjct: 1037 SADRGIFRTHIYKTEFIDLQ 1056
Score = 261 (96.9 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 67/137 (48%), Positives = 80/137 (58%)
Query: 820 NKALEDK---LGPDGLVYVGAKLNERDPMYSYW-KESE-NRYVTCRYSGKEEMCVEVVRM 874
N A E+K L DGL V K+ E P+YSY K +E Y + R G E V+ V
Sbjct: 1082 NLAYENKGKFLNKDGLPCVQQKITEGSPLYSYINKGNELTTYESFRNHG--EYFVDFV-- 1137
Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
S G V A + R R P VGDKFASR GQKG+ S +P ED+PF +SG+VPD
Sbjct: 1138 SIGKNNSNQV----AVVKLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPD 1193
Query: 935 IVFNPHGFPSRMTIGFL 951
I+FNPHG PSRMTIG L
Sbjct: 1194 IIFNPHGIPSRMTIGML 1210
Score = 156 (60.0 bits), Expect = 8.5e-83, Sum P(5) = 8.5e-83
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
L GY+YYGTE +YSG+ G +QA IF GV++YQRLRHM DK Q +
Sbjct: 1336 LNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVR 1382
Score = 151 (58.2 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 62/246 (25%), Positives = 103/246 (41%)
Query: 44 PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTL 103
P++K DK N F L HI F+ ++ + E+I +EF
Sbjct: 50 PNMKLKVDKLIN---GSYNIFTKFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNY 106
Query: 104 KL-NI-------VKAAISEPKVPAGPVGIHFNKY---YPTEARQTRSVYSGPFNVTVAWS 152
L N+ VK +S+ ++ + +Y YP + + Y G + +
Sbjct: 107 SLLNMNKNNSESVKFFVSDIQIKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQ 166
Query: 153 WDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRL 212
+ + T T G +PIM+ S C+L NL +L ++GE GG+F+V G K++R
Sbjct: 167 YKDEIAST-TICAGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVIRY 225
Query: 213 LINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
+I HP K N LL +D ++I + D + N L N S + F +
Sbjct: 226 VI-----HP---KYNTL----LLNADNKIHINCLLNDNTVVINFLTLTRNNSYVYGFRFQ 273
Query: 273 KSMCLL 278
++C L
Sbjct: 274 NAVCSL 279
Score = 68 (29.0 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 323 MLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
+L CILPH+ + +KF + M KL + ++ ++DS+ + T +L LLK
Sbjct: 366 ILKYCILPHIKNNSEKFETMCFMFKKLIYSNFKLITPINKDSLENHAVTTCSNLLANLLK 425
Query: 383 KE 384
+
Sbjct: 426 DQ 427
Score = 44 (20.5 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 266 RFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLT 325
+F + K L + SL H Q ++ Q+ K+ + ++ LN V Y T
Sbjct: 929 KFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTM--GIQSLNNV----YTFT 982
Query: 326 NCI 328
N I
Sbjct: 983 NKI 985
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 350 (128.3 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 89/257 (34%), Positives = 140/257 (54%)
Query: 404 SSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEM 463
S+ SA+ F TGN+S+ L Q SG+VI A+ IN +R +++FRA+HRG++FQ++
Sbjct: 546 SNTSSAILFFFKTGNISS---ENLHYQQKSGWVIAADEINNLRLITNFRAIHRGTFFQDV 602
Query: 464 RSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV-LAQIPSVLVSLG 522
+ PR+L ++WGFICPVHTPDGTPCGLLNHL C I ++ I L +G
Sbjct: 603 KVLTPRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHIHNLSSNEAHKLNIKLYLKKIG 662
Query: 523 M---LPLTPVIQSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKS-LE 577
+ L T I +I ++ + +++D + YI ++ V KL+ K KS E
Sbjct: 663 INVNLDDTSGIHTIYDDENIPIIVDSIPITYIGEKDFNRTVYKLKYAKNNNLFNLKSYFE 722
Query: 578 I-VYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQVFMDICITMKEAY 636
I YL P + + + T PGR++RP++NL +IE+I Q ++ + I ++
Sbjct: 723 INAYLNEPL----IMNSIIINTFPGRLIRPLLNLKTKDIEFISPSYQPYISVAINNEDVK 778
Query: 637 PGITTHRELSKTDFLSN 653
+ L K + + N
Sbjct: 779 KNNLARKLLKKKEQVVN 795
Score = 349 (127.9 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 72/140 (51%), Positives = 93/140 (66%)
Query: 627 DICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLN 686
+I I M E P + EL +T FLS LA+L P D NQSPRN+YQCQM KQTMG LN
Sbjct: 917 NINIDMYEQIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLN 976
Query: 687 WRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKS 746
Y K+YR+ TP P Y+ +DNFP GTNA+VA+++YTGYDMEDA+I+NK+
Sbjct: 977 NVYTFTNKIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKA 1036
Query: 747 SYERGFAHGCIFKSMFIELE 766
S +RG I+K+ FI+L+
Sbjct: 1037 SADRGIFRTHIYKTEFIDLQ 1056
Score = 261 (96.9 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 67/137 (48%), Positives = 80/137 (58%)
Query: 820 NKALEDK---LGPDGLVYVGAKLNERDPMYSYW-KESE-NRYVTCRYSGKEEMCVEVVRM 874
N A E+K L DGL V K+ E P+YSY K +E Y + R G E V+ V
Sbjct: 1082 NLAYENKGKFLNKDGLPCVQQKITEGSPLYSYINKGNELTTYESFRNHG--EYFVDFV-- 1137
Query: 875 SSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
S G V A + R R P VGDKFASR GQKG+ S +P ED+PF +SG+VPD
Sbjct: 1138 SIGKNNSNQV----AVVKLRSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPD 1193
Query: 935 IVFNPHGFPSRMTIGFL 951
I+FNPHG PSRMTIG L
Sbjct: 1194 IIFNPHGIPSRMTIGML 1210
Score = 156 (60.0 bits), Expect = 8.5e-83, Sum P(5) = 8.5e-83
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
L GY+YYGTE +YSG+ G +QA IF GV++YQRLRHM DK Q +
Sbjct: 1336 LNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVR 1382
Score = 151 (58.2 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 62/246 (25%), Positives = 103/246 (41%)
Query: 44 PSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKTL 103
P++K DK N F L HI F+ ++ + E+I +EF
Sbjct: 50 PNMKLKVDKLIN---GSYNIFTKFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNY 106
Query: 104 KL-NI-------VKAAISEPKVPAGPVGIHFNKY---YPTEARQTRSVYSGPFNVTVAWS 152
L N+ VK +S+ ++ + +Y YP + + Y G + +
Sbjct: 107 SLLNMNKNNSESVKFFVSDIQIKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKINRQ 166
Query: 153 WDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRL 212
+ + T T G +PIM+ S C+L NL +L ++GE GG+F+V G K++R
Sbjct: 167 YKDEIAST-TICAGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVIRY 225
Query: 213 LINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGSARFMFSHR 272
+I HP K N LL +D ++I + D + N L N S + F +
Sbjct: 226 VI-----HP---KYNTL----LLNADNKIHINCLLNDNTVVINFLTLTRNNSYVYGFRFQ 273
Query: 273 KSMCLL 278
++C L
Sbjct: 274 NAVCSL 279
Score = 68 (29.0 bits), Expect = 1.0e-93, Sum P(5) = 1.0e-93
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 323 MLTNCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLK 382
+L CILPH+ + +KF + M KL + ++ ++DS+ + T +L LLK
Sbjct: 366 ILKYCILPHIKNNSEKFETMCFMFKKLIYSNFKLITPINKDSLENHAVTTCSNLLANLLK 425
Query: 383 KE 384
+
Sbjct: 426 DQ 427
Score = 44 (20.5 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 266 RFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLT 325
+F + K L + SL H Q ++ Q+ K+ + ++ LN V Y T
Sbjct: 929 KFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTM--GIQSLNNV----YTFT 982
Query: 326 NCI 328
N I
Sbjct: 983 NKI 985
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 385 (140.6 bits), Expect = 2.0e-57, Sum P(3) = 2.0e-57
Identities = 129/413 (31%), Positives = 193/413 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D+ R I + M N ++TGN S + M G + + ++R+ Y+S +
Sbjct: 400 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMT 452
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ + + +
Sbjct: 453 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIK 512
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKI 572
+ S L + L S P +V L+G I+G I D Q + +R + E +
Sbjct: 513 LASNLGVEDVNLLCGEELSYPN-VFLVFLNGNILGVIRDHQKLVNTFRIMRRAGYINEFV 571
Query: 573 PKSLEI----VYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMNLAAG--NIEWI---GTFE 622
S + VY+ + G P + + P + + LA G N E G E
Sbjct: 572 SISTNLSDRCVYISS-DGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHEGLVE 630
Query: 623 QVFMDI-----C-ITMKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQM 675
++D+ C I + E TTH E+ L A LIP P NQSPRN YQC M
Sbjct: 631 --YLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM 688
Query: 676 GKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGY 735
GKQ MGT N R + +Y L P P + + +D + P G NA VAV+SY+GY
Sbjct: 689 GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGY 748
Query: 736 DMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
D+EDA++LNK+S +RGF ++K+ L+ Y +T + V G M+ A
Sbjct: 749 DIEDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGPMLDA 796
Score = 214 (80.4 bits), Expect = 2.0e-57, Sum P(3) = 2.0e-57
Identities = 43/102 (42%), Positives = 62/102 (60%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 846 QQPQYKDVPVTYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 900
Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
GQKG+C + P ED+PF D+G+ PDI+ NPHGFPSRMT+G L
Sbjct: 901 GQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGFPSRMTVGKL 942
Score = 131 (51.2 bits), Expect = 2.0e-57, Sum P(3) = 2.0e-57
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYFIV G EK++
Sbjct: 159 NECPLDPGGYFIVKGVEKVI 178
Score = 129 (50.5 bits), Expect = 1.6e-48, Sum P(3) = 1.6e-48
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
+ GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R +
Sbjct: 976 IRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPT 1035
Query: 825 DKLGPDGLVYVGAKLNERDPMYSY 848
+ DG + +G ERD + Y
Sbjct: 1036 EGRSRDGGLRLGEM--ERDCLIGY 1057
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 382 (139.5 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 126/411 (30%), Positives = 192/411 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D+ R I + M N ++TGN S + M G + + ++R+ Y+S +
Sbjct: 401 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMT 453
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ + + +
Sbjct: 454 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIK 513
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKI 572
+ L + L S P +V L+G I+G I D + S +R + E +
Sbjct: 514 LAGNLGVEDVNLLCGEELSYPN-VFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFV 572
Query: 573 PKSLEI----VYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMNLAAG--NIE-WIGTFEQV 624
S + VY+ + G P + + P + + LA G N E ++
Sbjct: 573 SISTNLTDRCVYISS-DGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVE 631
Query: 625 FMDI-----C-ITMKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
++D+ C I + E TTH E+ L A LIP P NQSPRN YQC MGK
Sbjct: 632 YLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGK 691
Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
Q MGT N R + +Y L P P + + +D + P G NA VAV+SY+GYD+
Sbjct: 692 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDI 751
Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
EDA++LNK+S +RGF ++K+ L+ Y +T + V G M+ A
Sbjct: 752 EDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGPMLDA 797
Score = 217 (81.4 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 847 QQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 901
Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
GQKG+C + P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 902 GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 943
Score = 131 (51.2 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYFIV G EK++
Sbjct: 159 NECPLDPGGYFIVKGVEKVI 178
Score = 128 (50.1 bits), Expect = 4.3e-48, Sum P(3) = 4.3e-48
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 980 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 382 (139.5 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 126/411 (30%), Positives = 192/411 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D+ R I + M N ++TGN S + M G + + ++R+ Y+S +
Sbjct: 401 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMT 453
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ + + +
Sbjct: 454 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIK 513
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKI 572
+ L + L S P +V L+G I+G I D + S +R + E +
Sbjct: 514 LAGNLGVEDVNLLCGEELSYPN-VFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFV 572
Query: 573 PKSLEI----VYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMNLAAG--NIE-WIGTFEQV 624
S + VY+ + G P + + P + + LA G N E ++
Sbjct: 573 SISTNLTDRCVYISS-DGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVE 631
Query: 625 FMDI-----C-ITMKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
++D+ C I + E TTH E+ L A LIP P NQSPRN YQC MGK
Sbjct: 632 YLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGK 691
Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
Q MGT N R + +Y L P P + + +D + P G NA VAV+SY+GYD+
Sbjct: 692 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDI 751
Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
EDA++LNK+S +RGF ++K+ L+ Y +T + V G M+ A
Sbjct: 752 EDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGPMLDA 797
Score = 217 (81.4 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 847 QQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 901
Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
GQKG+C + P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 902 GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 943
Score = 131 (51.2 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYFIV G EK++
Sbjct: 159 NECPLDPGGYFIVKGVEKVI 178
Score = 128 (50.1 bits), Expect = 4.3e-48, Sum P(3) = 4.3e-48
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 980 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 380 (138.8 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 125/411 (30%), Positives = 193/411 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D+ R I + M N ++TGN S + M G + + ++R+ Y+S +
Sbjct: 401 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMT 453
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ + + +
Sbjct: 454 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVK 513
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKI 572
+ S L + L S P +V L+G I+G I D + + +R + E +
Sbjct: 514 LASNLGVEDVNLLCGEELSYPN-VFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFV 572
Query: 573 PKSLEI----VYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMNLAAG--NIE-WIGTFEQV 624
S + VY+ + G P + + P + + LA G N E ++
Sbjct: 573 SISTNLTDRCVYISS-DGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVE 631
Query: 625 FMDI-----C-ITMKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
++D+ C I + E TTH E+ L A LIP P NQSPRN YQC MGK
Sbjct: 632 YLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGK 691
Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
Q MGT N R + +Y L P P + + ++ + P G NA VAV+SY+GYD+
Sbjct: 692 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDI 751
Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
EDA++LNK+S +RGF ++K+ L+ Y +T + V G M+ A
Sbjct: 752 EDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGPMLDA 797
Score = 217 (81.4 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 847 QQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 901
Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
GQKG+C + P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 902 GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 943
Score = 131 (51.2 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYFIV G EK++
Sbjct: 159 NECPLDPGGYFIVKGVEKVI 178
Score = 128 (50.1 bits), Expect = 7.1e-48, Sum P(3) = 7.1e-48
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 980 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 380 (138.8 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 125/411 (30%), Positives = 193/411 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D+ R I + M N ++TGN S + M G + + ++R+ Y+S +
Sbjct: 401 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMT 453
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ + + +
Sbjct: 454 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVK 513
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKI 572
+ S L + L S P +V L+G I+G I D + + +R + E +
Sbjct: 514 LASNLGVEDVNLLCGEELSYPN-VFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFV 572
Query: 573 PKSLEI----VYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMNLAAG--NIE-WIGTFEQV 624
S + VY+ + G P + + P + + LA G N E ++
Sbjct: 573 SISTNLTDRCVYISS-DGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVE 631
Query: 625 FMDI-----C-ITMKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
++D+ C I + E TTH E+ L A LIP P NQSPRN YQC MGK
Sbjct: 632 YLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGK 691
Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
Q MGT N R + +Y L P P + + ++ + P G NA VAV+SY+GYD+
Sbjct: 692 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDI 751
Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
EDA++LNK+S +RGF ++K+ L+ Y +T + V G M+ A
Sbjct: 752 EDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGPMLDA 797
Score = 217 (81.4 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 847 QQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 901
Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
GQKG+C + P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 902 GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 943
Score = 131 (51.2 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYFIV G EK++
Sbjct: 159 NECPLDPGGYFIVKGVEKVI 178
Score = 128 (50.1 bits), Expect = 7.1e-48, Sum P(3) = 7.1e-48
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 980 GYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 380 (138.8 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 125/411 (30%), Positives = 193/411 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D+ R I + M N ++TGN S + M G + + ++R+ Y+S +
Sbjct: 401 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMT 453
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ + + +
Sbjct: 454 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVK 513
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKI 572
+ S L + L S P +V L+G I+G I D + + +R + E +
Sbjct: 514 LASNLGVEDVNLLCGEELSYPN-VFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFV 572
Query: 573 PKSLEI----VYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMNLAAG--NIE-WIGTFEQV 624
S + VY+ + G P + + P + + LA G N E ++
Sbjct: 573 SISTNLTDRCVYISS-DGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVE 631
Query: 625 FMDI-----C-ITMKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
++D+ C I + E TTH E+ L A LIP P NQSPRN YQC MGK
Sbjct: 632 YLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGK 691
Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
Q MGT N R + +Y L P P + + ++ + P G NA VAV+SY+GYD+
Sbjct: 692 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDI 751
Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQA 788
EDA++LNK+S +RGF ++K+ L+ Y +T + V G M+ A
Sbjct: 752 EDALVLNKASLDRGFGRCLVYKNAKCTLKR----YTNQT-FDKVMGPMLDA 797
Score = 217 (81.4 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 847 QQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 901
Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
GQKG+C + P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 902 GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 943
Score = 131 (51.2 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYFIV G EK++
Sbjct: 159 NECPLDPGGYFIVKGVEKVI 178
Score = 128 (50.1 bits), Expect = 7.1e-48, Sum P(3) = 7.1e-48
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 980 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1039
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 1040 SRDGGLRLGEM--ERDCLIGY 1058
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 378 (138.1 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 122/413 (29%), Positives = 190/413 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D+ R I + M N ++TGN S + M G + + ++R+ ++S +
Sbjct: 396 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSFISALGMMT 448
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ + + +
Sbjct: 449 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIK 508
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKI 572
+ L + L S P +V L+G I+G I D Q +R + E +
Sbjct: 509 LAFNLGVEDVNLLCGEELSYPT-VFLVFLNGNILGVIRDHQKLVYTFRLMRRAGFINEFV 567
Query: 573 PKSLEI----VYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMNLAAGN-----------IE 616
S + VY+ + G P + + G P + + L+ G +E
Sbjct: 568 SISTNLTDRCVYISS-DGGRLCRPYIIVKNGKPAVKNKHIEELSQGYRTFEDFLHESLVE 626
Query: 617 WIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMG 676
++ E+ +I + + TTH E+ L A LIP P NQSPRN YQC MG
Sbjct: 627 YLDVNEENDCNIAL-YEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMG 685
Query: 677 KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYD 736
KQ MGT N R + +Y L P P + + +D + P G NA VAV+SY+GYD
Sbjct: 686 KQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYD 745
Query: 737 MEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQ 789
+EDA++LNK+S +RGF ++K+ L Y +T + V G M+ A+
Sbjct: 746 IEDALVLNKASLDRGFGRCLVYKNAKCTLRR----YTNQT-FDKVMGPMLDAE 793
Score = 221 (82.9 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 46/101 (45%), Positives = 61/101 (60%)
Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
+ + R V Y G + +E V +SS + V I R R P +GDKF+SR G
Sbjct: 844 QPQYREVPVSYKGATDSYIEKVMISSNAEDAFLVK-----ILLRQTRRPEIGDKFSSRHG 898
Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
QKG+C + P ED+PF DSG+ PDI+ NPHG+PSRMT+G L
Sbjct: 899 QKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKL 939
Score = 129 (50.5 bits), Expect = 3.6e-57, Sum P(3) = 3.6e-57
Identities = 40/141 (28%), Positives = 65/141 (46%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TP + +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWKNRGLLFSDLGVYIRSVKRDE 250
E P + GGYFIV G EK++ + +N I + ++ +G + G + S ++
Sbjct: 159 NECPLDPGGYFIVKGQEKVILIQEQLSKNR-IIVDQD---RKGTV----GASVTSSTHEK 210
Query: 251 SATNNVLHFVTNGSARFMFSH 271
+ N++ V G RF H
Sbjct: 211 KSRTNMI--VKQG--RFYLKH 227
Score = 128 (50.1 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 976 GYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1035
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 1036 SRDGGLRLGEM--ERDCLIGY 1054
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 360 (131.8 bits), Expect = 6.0e-56, Sum P(3) = 6.0e-56
Identities = 114/385 (29%), Positives = 183/385 (47%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
DI R I + + N ++TGN + M+ G + + ++R+ Y+S +
Sbjct: 414 DIVKHMRQDMITNTIVNAMSTGNWIIKRFR----MERLG---VTQVLSRLSYISALGMMT 466
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ K + +
Sbjct: 467 RINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLR 526
Query: 514 I--PSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGE 570
+ S + L + + V + PE L + L+G ++G +D + V LR ++ E
Sbjct: 527 LLLNSGVEDLHNVHFSHVNK--PENTL-IFLNGVLIGTAVDPERVVKAVRDLRRSGLLSE 583
Query: 571 --KIPKSL--EIVYLKRPEKGMGLYPGLYLFTGPGRMLRP-VMNLAAGN----------- 614
+ +SL V++ + G P + + G + + V L G
Sbjct: 584 FVSVSRSLTNRSVFISS-DGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDDGI 642
Query: 615 IEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQ 674
+E++ E I + +E P TTH E+ L A LIP P NQSPRN YQC
Sbjct: 643 VEYLDVNEMNDALIAVYGREIGPE-TTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCA 701
Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
MGKQ MGT N + + +Y L P P + + + + P G N I+AV+SY+G
Sbjct: 702 MGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSG 761
Query: 735 YDMEDAMILNKSSYERGFAHGCIFK 759
YD+EDA++LNK+S +RG+ ++K
Sbjct: 762 YDIEDALVLNKASLDRGYGRCLVYK 786
Score = 196 (74.1 bits), Expect = 6.0e-56, Sum P(3) = 6.0e-56
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
R R P +GDKF+SR GQKG+C + ED+PF D G+VPD++ NPHG+PSRMT+G L
Sbjct: 907 RQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKL 964
Score = 162 (62.1 bits), Expect = 6.0e-56, Sum P(3) = 6.0e-56
Identities = 47/161 (29%), Positives = 77/161 (47%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYP 131
H+ SFD + E + + I + L + I +P G + + +K P
Sbjct: 45 HLVSFDHFVQEEIRSIMLSNQKITSDA-NPNFYLKYLDIRIGKPSSEEG-LNMTHDKITP 102
Query: 132 TEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE--VGRVPIMLKSKRCHLRNLTPAQLIE 189
E R YS P +V + ++ + F K+ +GR+PIML+S +C LR+L +L
Sbjct: 103 QECRLRDMTYSAPISVDIEYTRGNQR--VFKKDLIIGRMPIMLRSSKCILRDLAEEELAR 160
Query: 190 RGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRNAWK 230
E P + GGYF+V G EK++ + +N I + RN+ K
Sbjct: 161 VQECPYDPGGYFVVKGSEKVILIQEQLSKNR-IMVGRNSSK 200
Score = 131 (51.2 bits), Expect = 3.7e-49, Sum P(3) = 3.7e-49
Identities = 36/111 (32%), Positives = 58/111 (52%)
Query: 740 AMILNKSSYERGFAHGCI-FKSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHY 797
A ++N +Y G A G K + EL + GYNY G + + SG+ G + A I+FG ++Y
Sbjct: 972 AGVVN-GTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYY 1030
Query: 798 QRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
Q+L+HMV DK + R + + +G + +G ERD + +Y
Sbjct: 1031 QKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEM--ERDCLIAY 1079
Score = 40 (19.1 bits), Expect = 8.0e-22, Sum P(3) = 8.0e-22
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 852 SENRYVTCRYSGKEEMCVEVVRMSS 876
S+NR + R S KE C EV+ +S
Sbjct: 188 SKNRIMVGRNSSKELQC-EVLSSTS 211
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 349 (127.9 bits), Expect = 2.5e-54, Sum P(3) = 2.5e-54
Identities = 115/373 (30%), Positives = 180/373 (48%)
Query: 403 ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
+++I S + ++TGN S + M+ +G + ++R+ Y+S + R S F+
Sbjct: 426 SNNITSGLNRAISTGNWSLKRFK----MERAG---VTHVLSRLSYISALGMMTRISSQFE 478
Query: 462 EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQIS---EYIPSKVLAQIPSV 517
+ R S PR L+ +G +C TP+G CGL+ +L I+ E P K L +
Sbjct: 479 KSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYV--- 535
Query: 518 LVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYIL--DQIATSLVPKLRMLKIVGEKIP-- 573
LG+ +T + + V L+G ++G I + T LR V E I
Sbjct: 536 ---LGVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSEFISIY 591
Query: 574 -KSLEIVYLKRPEKGMGLYPGLYLFTGPGRM----LRPVMN--------LAAGNIEWIGT 620
S ++ + G P + + G R+ LR +++ L G +E++
Sbjct: 592 SNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDV 651
Query: 621 FEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
E+ I + K+ P +T H E+ L +A LIP P NQSPRN YQC MGKQ +
Sbjct: 652 NEENDSYIALYEKDIVPSMT-HLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAI 710
Query: 681 GTPCLNWRYQGVGKLYRLQT-PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
G N +++ + L L T P P + + +D D P G NA VAV+SY+GYD+ED
Sbjct: 711 GAIAYN-QFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIED 769
Query: 740 AMILNKSSYERGF 752
A++LNKSS +RGF
Sbjct: 770 ALVLNKSSIDRGF 782
Score = 215 (80.7 bits), Expect = 2.5e-54, Sum P(3) = 2.5e-54
Identities = 55/138 (39%), Positives = 71/138 (51%)
Query: 827 LGPDGLVYVGAK-------LNERDPMYSYWKESEN--------RYVTCRYSGKEEMCVEV 871
LGPDGL VG K +N+ P S + N R Y G E ++
Sbjct: 824 LGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQ 883
Query: 872 VRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGL 931
V MS + + + R R P +GDKF+SR GQKG+C + ED+PF D G+
Sbjct: 884 VMMSVSDNDQALIK-----VLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGI 938
Query: 932 VPDIVFNPHGFPSRMTIG 949
VPDI+ NPHGFPSRMT+G
Sbjct: 939 VPDIIMNPHGFPSRMTVG 956
Score = 144 (55.7 bits), Expect = 6.5e-47, Sum P(3) = 6.5e-47
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
I ++ G+NY G + +YSG+ G +QA IFFG ++YQ+L+HMV DK + R +
Sbjct: 990 ILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQ 1049
Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSY 848
+ DG + +G ERD + +Y
Sbjct: 1050 PTEGRSRDGGLRLGEM--ERDCVIAY 1073
Score = 139 (54.0 bits), Expect = 2.5e-54, Sum P(3) = 2.5e-54
Identities = 49/173 (28%), Positives = 80/173 (46%)
Query: 47 KNLTDKNFGKPPDKQN---EFLLTLGA--PHIASFDFMLDEGLDLAVED----IAPIEFE 97
K LTD+ DK + FL G H+ SF++ +D L ++ ++ ++ E
Sbjct: 32 KKLTDE-INTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPE 90
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
Y K + + + K + S K P P E R YS P V + ++
Sbjct: 91 FYLKYVDIRVGKKSSSSTKDYLTP---------PHECRLRDMTYSAPIYVDIEYTRGRNI 141
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
E+GR+PIML+S +C L + +++ + E P + GGYFIV G EK++
Sbjct: 142 IMHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194
Score = 39 (18.8 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 297 VFFGQIFKEKLQY 309
+FFG I+ +KL++
Sbjct: 1017 IFFGPIYYQKLKH 1029
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 337 (123.7 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 67/132 (50%), Positives = 82/132 (62%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG P + + KL DGL ++GAKL DP YSY + Y KE V+ ++
Sbjct: 179 FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIK 238
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+ S T G C I R+ RNPT+GDKFASR GQKGI S WPAED+PFT+SG+VP
Sbjct: 239 VCSNDTGSGKF--KCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVP 296
Query: 934 DIVFNPHGFPSR 945
DI+FNPHGFPSR
Sbjct: 297 DILFNPHGFPSR 308
Score = 256 (95.2 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 57/104 (54%), Positives = 70/104 (67%)
Query: 682 TPCLNWR-YQGV--GKLYRLQT-PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
TPC R Q + GK + T SP RP YD DMDN+P+GTNAIVAVISYTGYDM
Sbjct: 79 TPCRLVRPVQNLALGKEELIGTMEQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDM 138
Query: 738 EDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGV 781
EDAMI+NK+S+ERGFAHG ++KS FI+L G ++ G+
Sbjct: 139 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ-GDSSLVFGI 181
Score = 180 (68.4 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 42/103 (40%), Positives = 59/103 (57%)
Query: 522 GMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK-IPKSLEIVY 580
G+ P+ + V+LDG +VG++ +A + LR K++ EK IP +E+V
Sbjct: 2 GVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVL 61
Query: 581 LKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
+ K LYPGL+LFT P R++RPV NLA G E IGT EQ
Sbjct: 62 IPMTGKP-SLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQ 103
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 255 (94.8 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 62/164 (37%), Positives = 90/164 (54%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM-----KE-AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T KE AY TH E+ + L A++IP PD
Sbjct: 657 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 716
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 717 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 776
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
N+IVA+ SYTGY+ ED++I+N+S+ +RGF ++S + E ES
Sbjct: 777 NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS-YKEQES 819
Score = 222 (83.2 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 70/204 (34%), Positives = 97/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 786 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQG 839
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVR 873
A+ +KL DGL+ G +++ D + E E RY+ ++ C +R
Sbjct: 840 MRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRD--CSTFLR 897
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 898 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 957
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHL 981
Score = 139 (54.0 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 462
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 463 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 520 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 575
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 576 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 626
Score = 124 (48.7 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 113 (44.8 bits), Expect = 2.0e-41, Sum P(4) = 2.0e-41
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1058
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 361 (132.1 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 114/400 (28%), Positives = 196/400 (49%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D++ I M ++TGN + + M+ SG +++ ++R+ +++ +
Sbjct: 646 DVFRNLPKDIITRGMQTAISTGNWNIKRFK----MEKSG---VSQVLSRLSFIACIGMMT 698
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L ++ ++
Sbjct: 699 RLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTN--DNENNEN 756
Query: 514 IPSVLVSLGMLPLTPVI-QSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK 571
+ +L +LG+ + + I E V+L+G ++G + + + ++R L+ G K
Sbjct: 757 LIEILYTLGVEDSDSLTGEEIYKEGVFFVILNGILLG--VHKRPQKFMQRIRYLRRYG-K 813
Query: 572 IPKSLEI--------VYLKRPEKGMGLYPGLYLFTGPGRML----RPVMN--------LA 611
I + + I +Y+ + G P + + G ++L + + N L
Sbjct: 814 IGQFVSIYDNFLHNAIYIST-DGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFDLLK 872
Query: 612 AGNIEWIGTFEQVFMDICITMKEAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
+ IEWI EQ ++ I + E+ + TTH E+ L +A LIP P+ NQSPRN
Sbjct: 873 SSVIEWIDVNEQ--NNLLIALNESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNT 930
Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
YQC MGKQ +G N + LY L P P + + ++ + P G NAIVAV+
Sbjct: 931 YQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVM 990
Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
S+ GYD+EDA+++NKSS +RGF + +EL+ +N
Sbjct: 991 SFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFN 1030
Score = 189 (71.6 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
R R P +GDKF+SR GQKG+ + ED+PFT+SG+ PD++ NPHGFPSRMT+G L
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKL 1262
Score = 138 (53.6 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 40/106 (37%), Positives = 55/106 (51%)
Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK---EVGRVPIMLKSKRCHLRNLTP 184
K P RQ YS P V V + K TK E+GR+P+ML+S C L N +
Sbjct: 313 KLTPQICRQRDLTYSAPIYVDVEYV---KGNSIITKNNVEIGRLPVMLRSDICVLNNKSE 369
Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRL---LINNRRNHPIAIKRN 227
+L++ GE P + GGYFIV G E+++ + L NR + IK N
Sbjct: 370 EELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHN 415
Score = 116 (45.9 bits), Expect = 9.9e-45, Sum P(3) = 9.9e-45
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 741 MILNKSSYERG-FAHGCIFKSM-FIELES-----GYNYYGTETMYSGVDGSMMQAQIFFG 793
++ +K++ G + +G IF F E+ G+N E +YSG+ G ++ IF G
Sbjct: 1265 LVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMG 1324
Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
++YQ+L+HMV DK + R + + +G + +G ERD + +Y
Sbjct: 1325 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEM--ERDCLIAY 1377
Score = 45 (20.9 bits), Expect = 9.2e-19, Sum P(3) = 9.2e-19
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 367 LQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYA 399
+Q ++ G+ ++ K EKSG S VL A
Sbjct: 660 MQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIA 692
Score = 38 (18.4 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 826 KLGPDGLVYVGAKLNER 842
K D L+Y+G K+ R
Sbjct: 495 KTNLDALLYIGKKIRPR 511
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 361 (132.1 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 114/400 (28%), Positives = 196/400 (49%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D++ I M ++TGN + + M+ SG +++ ++R+ +++ +
Sbjct: 646 DVFRNLPKDIITRGMQTAISTGNWNIKRFK----MEKSG---VSQVLSRLSFIACIGMMT 698
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L ++ ++
Sbjct: 699 RLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTN--DNENNEN 756
Query: 514 IPSVLVSLGMLPLTPVI-QSI-PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEK 571
+ +L +LG+ + + I E V+L+G ++G + + + ++R L+ G K
Sbjct: 757 LIEILYTLGVEDSDSLTGEEIYKEGVFFVILNGILLG--VHKRPQKFMQRIRYLRRYG-K 813
Query: 572 IPKSLEI--------VYLKRPEKGMGLYPGLYLFTGPGRML----RPVMN--------LA 611
I + + I +Y+ + G P + + G ++L + + N L
Sbjct: 814 IGQFVSIYDNFLHNAIYIST-DGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFDLLK 872
Query: 612 AGNIEWIGTFEQVFMDICITMKEAYPGI-TTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
+ IEWI EQ ++ I + E+ + TTH E+ L +A LIP P+ NQSPRN
Sbjct: 873 SSVIEWIDVNEQ--NNLLIALNESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNT 930
Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
YQC MGKQ +G N + LY L P P + + ++ + P G NAIVAV+
Sbjct: 931 YQCAMGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVM 990
Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
S+ GYD+EDA+++NKSS +RGF + +EL+ +N
Sbjct: 991 SFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHSVELKKYFN 1030
Score = 189 (71.6 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
R R P +GDKF+SR GQKG+ + ED+PFT+SG+ PD++ NPHGFPSRMT+G L
Sbjct: 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKL 1262
Score = 138 (53.6 bits), Expect = 2.4e-52, Sum P(3) = 2.4e-52
Identities = 40/106 (37%), Positives = 55/106 (51%)
Query: 128 KYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTK---EVGRVPIMLKSKRCHLRNLTP 184
K P RQ YS P V V + K TK E+GR+P+ML+S C L N +
Sbjct: 313 KLTPQICRQRDLTYSAPIYVDVEYV---KGNSIITKNNVEIGRLPVMLRSDICVLNNKSE 369
Query: 185 AQLIERGEHPDEWGGYFIVGGHEKLVRL---LINNRRNHPIAIKRN 227
+L++ GE P + GGYFIV G E+++ + L NR + IK N
Sbjct: 370 EELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHN 415
Score = 116 (45.9 bits), Expect = 9.9e-45, Sum P(3) = 9.9e-45
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 741 MILNKSSYERG-FAHGCIFKSM-FIELES-----GYNYYGTETMYSGVDGSMMQAQIFFG 793
++ +K++ G + +G IF F E+ G+N E +YSG+ G ++ IF G
Sbjct: 1265 LVASKAAVMDGEYKYGSIFSGTPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMG 1324
Query: 794 VVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
++YQ+L+HMV DK + R + + +G + +G ERD + +Y
Sbjct: 1325 PIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEM--ERDCLIAY 1377
Score = 45 (20.9 bits), Expect = 9.2e-19, Sum P(3) = 9.2e-19
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 367 LQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYA 399
+Q ++ G+ ++ K EKSG S VL A
Sbjct: 660 MQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIA 692
Score = 38 (18.4 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 826 KLGPDGLVYVGAKLNER 842
K D L+Y+G K+ R
Sbjct: 495 KTNLDALLYIGKKIRPR 511
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 255 (94.8 bits), Expect = 6.5e-52, Sum P(4) = 6.5e-52
Identities = 57/137 (41%), Positives = 73/137 (53%)
Query: 634 EAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVG 693
EA TTH E+ L +A LIP P NQSPRN YQC MGKQ MG N +
Sbjct: 670 EAAKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDT 729
Query: 694 KLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFA 753
LY L P P + + D G NA VAV+S++GYD+EDA+++NKSS +RGF
Sbjct: 730 LLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFG 789
Query: 754 HGCIFKSMFIELESGYN 770
CI + + Y+
Sbjct: 790 R-CIVMKKIVAMSQKYD 805
Score = 193 (73.0 bits), Expect = 6.5e-52, Sum P(4) = 6.5e-52
Identities = 42/100 (42%), Positives = 60/100 (60%)
Query: 852 SENRYVTCR--YSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
S+++Y R + G E V R++ + G + YI R R P +GDKF+SR
Sbjct: 864 SDSQYRPAREYFKGPEGETQVVDRVALCSDKKGQLC--IKYI-IRHTRRPELGDKFSSRH 920
Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
GQKG+C + ED PF++ G+ PD++ NPHGFPSRMT+G
Sbjct: 921 GQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVG 960
Score = 150 (57.9 bits), Expect = 6.5e-52, Sum P(4) = 6.5e-52
Identities = 56/189 (29%), Positives = 88/189 (46%)
Query: 36 LNQNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGA--PHIASFDFMLDEGLDLAVEDIAP 93
+++ LSAP +K+ DK F P EFL G H+ SF++ ++ G+ V+ +
Sbjct: 17 IDKEKLSAP-IKSTADK-FQLVP----EFLKVRGLVKQHLDSFNYFINVGIHKIVKANSR 70
Query: 94 IEFEIYGKTLKLNIVKAAISEPKVPAGPVGIH-FNKYYPTEARQTRSVYSGPFNVTVAW- 151
I + ++ L K + EP + + ++ P R Y+ P V + +
Sbjct: 71 ITSTV-DPSIYLRFKKVRVGEPSI----INVNTVENINPHMCRLADMTYAAPIFVNIEYV 125
Query: 152 --SWDGKAGGTFTKEV-GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEK 208
S KA + GR+PIML+S RC L +L GE P + GGYFI+ G EK
Sbjct: 126 HGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEK 185
Query: 209 LVRLLINNR 217
+ LLI +
Sbjct: 186 V--LLIQEQ 192
Score = 134 (52.2 bits), Expect = 6.5e-52, Sum P(4) = 6.5e-52
Identities = 73/322 (22%), Positives = 140/322 (43%)
Query: 272 RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQY------DLRHLNEVEICDYMLT 325
R S LL ++ EG++TQ + + K K+ Y D R L+ + D L
Sbjct: 269 RFSASLLPSIEECVSEGVNTQKQALDYLEAKVK-KISYGTPPEKDGRALSILR--DLFLA 325
Query: 326 NCILPHLDDYWDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE- 384
+ +P +++ K + M ++ + +D +D + + + G L + LL ++
Sbjct: 326 HVPVPD-NNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQL-ISLLFEDL 383
Query: 385 -KSGTSAVLKESD--IYAAFRASSIE-SAMTNFLATGNVSAGKNSTLQL--MQASGFVI- 437
K+ S +K D + RAS + S N + ++S G TL F +
Sbjct: 384 FKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTLSTGNFDIKRFRMH 443
Query: 438 ---MAENINRMRYMSHFRAVHRGS-YFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL 492
M + + R+ ++ + + S F++ R S PR L+ WG +CP TP+G CGL
Sbjct: 444 RKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGL 503
Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQS---IPEQALMVMLDGRIVG- 548
+ +L ++ + + ++ LG+ L + P+ + +V+L+G I+G
Sbjct: 504 VKNLALMTHVTT---DEEEGPLVAMCYKLGVTDLEVLSAEELHTPD-SFLVILNGLILGK 559
Query: 549 YILDQIATSLVPKLRMLKIVGE 570
+ Q + + +LR +GE
Sbjct: 560 HSRPQYFANSLRRLRRAGKIGE 581
Score = 131 (51.2 bits), Expect = 1.7e-45, Sum P(4) = 1.7e-45
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
+E G++Y G + +YSG+ G ++A IF G ++YQ+L+HMV DK + R +
Sbjct: 1001 VEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPT 1060
Query: 825 DKLGPDGLVYVGAKLNERDPMYSY 848
+ +G + VG ERD + +Y
Sbjct: 1061 EGKSKNGGLRVGEM--ERDCLIAY 1082
Score = 43 (20.2 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 80 LDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEP 115
LDEG + A D IE E + T+ L +V I P
Sbjct: 665 LDEGAEAAKADTTHIEIEPF--TI-LGVVAGLIPYP 697
Score = 42 (19.8 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 419 VSAGKNSTLQLMQASGFVI 437
+ AG+N+T+ +M SG+ I
Sbjct: 755 LGAGQNATVAVMSFSGYDI 773
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 250 (93.1 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 62/161 (38%), Positives = 86/161 (53%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM----------KEAYPGITTHRELSKTDFLSNLANLIP 659
+A G IE+I T E+ I +T+ +EAY TH E+ + L A++IP
Sbjct: 661 VAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIP 720
Query: 660 MPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNF 719
PD NQSPRN YQ MGKQ MG N++++ Y L P P + L
Sbjct: 721 FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL 780
Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P G NAIVA+ Y+GY+ ED++I+N+SS +RGF F+S
Sbjct: 781 PAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 821
Score = 201 (75.8 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 58/200 (29%), Positives = 96/200 (48%)
Query: 763 IELESGYNYYGTETM-YSGVDGSMMQAQIFFGVVHYQ--RLRHMVSDKWQTKDYFGRDPA 819
I SGYN + M S +D ++ +FF + ++ +V + + D
Sbjct: 790 ISCYSGYNQEDSVIMNQSSIDRGFFRS-LFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGM 848
Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMSS 876
DKL DGL G +++ D + + E + + RY+ ++ + + +
Sbjct: 849 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHS-ISLRHSET 907
Query: 877 GFTEGGSVTPNC---AYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGL 931
G + +T N ++ R++ R P +GDKF+SR GQKG + + ED+P+T G+
Sbjct: 908 GMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGV 967
Query: 932 VPDIVFNPHGFPSRMTIGFL 951
PDI+ NPH PSRMTIG L
Sbjct: 968 TPDIIVNPHAIPSRMTIGQL 987
Score = 150 (57.9 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 51/177 (28%), Positives = 83/177 (46%)
Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
KE ++ A +A +I S + LATGN + + +G +++ +NR+ Y +S
Sbjct: 432 KEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTR----AG---VSQVLNRLTYASTLS 484
Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
H R ++ +E + ++PRQL WG +CP TP+G CGL+ +L I+ + S
Sbjct: 485 HLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYIT--VGSA 541
Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
I L G + S+ QA + ++G VG D LV LR L+
Sbjct: 542 AYP-ILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDP--DMLVKTLRRLR 595
Score = 128 (50.1 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 47/161 (29%), Positives = 72/161 (44%)
Query: 79 MLDEGLDLAVEDIA---PIEFEIYGKTL-KLNIVKAAISEPKVPAGPVGIHFNKYYPTEA 134
++DE D+ + + P + +T+ K++ + +S+P + G +P A
Sbjct: 58 IVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESD-G-ETATLFPKAA 115
Query: 135 RQTRSVYSGPFNVTVAW-----SWDGKA---GGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
R YS P V V DG+ FTK +G+VPIML+S C L +
Sbjct: 116 RLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEK 175
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKR 226
L E GE P + GGYFI+ G EK++ NH K+
Sbjct: 176 DLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKK 216
Score = 112 (44.5 bits), Expect = 2.7e-42, Sum P(4) = 2.7e-42
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDP 818
GY G E MY+G G + A IF G +YQRL+HMV DK ++ GR P
Sbjct: 1024 GYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSR---GRGP 1071
Score = 38 (18.4 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 286 EEGIHTQHDSKVFFGQI 302
EE TQ +KVF G++
Sbjct: 142 EEVTETQDFTKVFIGKV 158
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 228 (85.3 bits), Expect = 3.7e-51, Sum P(4) = 3.7e-51
Identities = 53/155 (34%), Positives = 79/155 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICITMKE----AYPGITTHRELSKTDFLSNLANLIPMPDCNQ 665
+ G +E I + E+ I + ++ Y TH E+ L A++IP PD NQ
Sbjct: 665 VGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQ 724
Query: 666 SPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNA 725
SPRN YQ MGKQ MG N+ + + L P P + L + P G NA
Sbjct: 725 SPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINA 784
Query: 726 IVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
IVA++SY+GY+ ED++I+N S+ +RG ++S
Sbjct: 785 IVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRS 819
Score = 186 (70.5 bits), Expect = 3.7e-51, Sum P(4) = 3.7e-51
Identities = 36/61 (59%), Positives = 41/61 (67%)
Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
I R R P +GDKFASR GQKG + + ED+PFT GL PDI+ NPH PSRMTIG
Sbjct: 927 IRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGH 986
Query: 951 L 951
L
Sbjct: 987 L 987
Score = 176 (67.0 bits), Expect = 3.7e-51, Sum P(4) = 3.7e-51
Identities = 76/302 (25%), Positives = 133/302 (44%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------S 375
+LPH+ ++ + K + +M +L G +LD D I + + G S
Sbjct: 353 LLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRS 412
Query: 376 LYLQLLKKEKSGTSAVLKESDIYA---AFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
L+ LLK+ + + ++D +A + S+I +T LATGN K +
Sbjct: 413 LFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAH---QSR 469
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
+G +++ +NR+ Y +SH R + +E + ++PRQL WG +CP TP+G
Sbjct: 470 AG---VSQVLNRLTYTATLSHLRRAN-SPIGREGKLAKPRQLHNTQWGMVCPAETPEGQA 525
Query: 490 CGLLNHLTTNCQISE-YIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS +P +L L M L V S A + ++G VG
Sbjct: 526 VGLVKNLALMAYISVGSLPEPIL----EFLEEWSMENLEEVSPSAIADATKIFVNGAWVG 581
Query: 549 YIL--DQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP 606
DQ+ T+L R + I+ ++ +I R + + ++T GR+ RP
Sbjct: 582 IHREPDQLMTTLKKLRRQMDIIVSEVSMVRDI----RDRE-------IRIYTDAGRVCRP 630
Query: 607 VM 608
++
Sbjct: 631 LL 632
Score = 137 (53.3 bits), Expect = 3.7e-51, Sum P(4) = 3.7e-51
Identities = 45/148 (30%), Positives = 68/148 (45%)
Query: 75 SFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVG--IHFNK---- 128
SFD + + VED P+E + + L ++ A K + H+ K
Sbjct: 53 SFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSLKFNQIYLSKPTHWEKDGAP 112
Query: 129 --YYPTEARQTRSVYSGPF--NVTVAWSWDGKAGG-TFTKE-VGRVPIMLKSKRCHLRNL 182
P EAR Y+ P ++T + D A + K VG+VP+ML+S C L N+
Sbjct: 113 MPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNM 172
Query: 183 TPAQLIERGEHPDEWGGYFIVGGHEKLV 210
T L E E P + GGYF++ G EK++
Sbjct: 173 TDRDLTELNECPLDPGGYFVINGSEKVL 200
Score = 124 (48.7 bits), Expect = 9.8e-45, Sum P(4) = 9.8e-45
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
E GY+ G E MY+G G + QIFFG +YQRL+HMV DK
Sbjct: 1023 EYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDK 1064
Score = 58 (25.5 bits), Expect = 5.6e-43, Sum P(4) = 5.6e-43
Identities = 23/63 (36%), Positives = 30/63 (47%)
Query: 221 PIAIKRNAWKNRGLLF-SDLGVYI-RSVKRDESATNNVLHFVTNGSARFMFSHRKSMCLL 278
P+ + N + R L + S L V I + V RD+SAT V V G M R S C+L
Sbjct: 112 PMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVML--RSSYCML 169
Query: 279 GMM 281
M
Sbjct: 170 SNM 172
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 246 (91.7 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 59/158 (37%), Positives = 85/158 (53%)
Query: 610 LAAGNIEWIGTFEQVFMDICIT---MKE----AYPGITTHRELSKTDFLSNLANLIPMPD 662
+A+G +E+I T E+ + I ++ +K+ AY TH E+ L A++IP PD
Sbjct: 658 VASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPD 717
Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 718 HNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAG 777
Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
N+IVA++ YTGY+ ED++ILN S+ ERGF ++S
Sbjct: 778 INSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRS 815
Score = 199 (75.1 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 52/137 (37%), Positives = 73/137 (53%)
Query: 825 DKLGPDGLVYVGAKLNERDPMYSYW---KESENRYV--TCRYSGKEEMCVEVVRMSSGFT 879
DKL DG++ G +++ D + E+++ T R+S K + + +G
Sbjct: 848 DKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFS-KRDASTFLRNSETGIV 906
Query: 880 EGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPD 934
+ +T N Y I R R P +GDKFASR GQKG C +++ ED+ FT GL PD
Sbjct: 907 DQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPD 966
Query: 935 IVFNPHGFPSRMTIGFL 951
I+ NPH PSRMTIG L
Sbjct: 967 IIINPHAIPSRMTIGHL 983
Score = 155 (59.6 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 75/307 (24%), Positives = 133/307 (43%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGG--------S 375
+LPH+ D+ + K L +M +L G +LD D + + G
Sbjct: 348 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407
Query: 376 LYLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
L+ L+K+ + T + K+ ++ A + + I + LATGN K + QA
Sbjct: 408 LFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAH----QA 463
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R V+ ++ + ++PRQL WG +CP TP+G
Sbjct: 464 RAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAA 520
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + S A + ++G VG
Sbjct: 521 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEIAPSAIADATKIFVNGCWVG 576
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R + + ++T GR+ RP++
Sbjct: 577 IHRDP--EQLMATLRKLRRQMDIIVSEVSMIRDIRDRE-------IRIYTDAGRICRPLL 627
Query: 609 NLAAGNI 615
+ G++
Sbjct: 628 IVENGSL 634
Score = 124 (48.7 bits), Expect = 8.2e-43, Sum P(4) = 8.2e-43
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 760 SMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
S F++ E GY+ G E MY+G G + AQ+F G +YQRL+HMV DK
Sbjct: 1014 STFLQ-EYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 1060
Score = 120 (47.3 bits), Expect = 1.4e-50, Sum P(4) = 1.4e-50
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 131 PTEARQTRSVYSGPF--NVTVAWSWDG--KAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P ++T + +G K +G++PIML+S C L LT
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDR 170
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 171 DLTELNECPLDPGGYFIINGSEKVL 195
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 316 (116.3 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 116/398 (29%), Positives = 181/398 (45%)
Query: 403 ASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQ 461
++ I M ++TGN S + M+ +G + ++R+ Y++ + R S F+
Sbjct: 496 SNHITQGMNRAISTGNWSLKRFR----MERAG---VTHVLSRLSYIAALGMMTRISSQFE 548
Query: 462 EMRS-SEPRQLRTDAWGFICPVHTPDGTPCGL------LNHLTTNCQISEYIPSKVLAQI 514
+ R S PR L+ +G IC TP+G CGL + H+TTN + I + +
Sbjct: 549 KTRKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGP-IKNLIFMLG 607
Query: 515 PSVLVSLGMLPL-TPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIP 573
+ ++G + P +I + L R Y L+ L R+ + V I
Sbjct: 608 AEDIQTVGGKEIYAPGSYTISINGTPMALTRR-PKYFLNAFRR-LRRMGRISEFVSIYIN 665
Query: 574 KSLEIVYLKRPEKGMGLYPGLYLFTGPGRM----LRPVMN--------LAAGNIEWIGTF 621
V++ + G P + + G R+ LR + + LA G +E++
Sbjct: 666 HHQRAVHVATDD-GRICRPLIIVEDGKSRVKKHHLRKLRDGTMQFDDFLAQGLVEYVDVN 724
Query: 622 EQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMG 681
E+ I I K+ TTH E+ L +A LIP P NQSPRN YQC MGKQ +G
Sbjct: 725 EENDSLIAIYEKDI-TDTTTHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 783
Query: 682 TPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAM 741
N + LY + P P + + D P G NA VAV+SY+GYD+EDA+
Sbjct: 784 AIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDAL 843
Query: 742 ILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
+LNK S +RGF +F+ ++S N GT+ + S
Sbjct: 844 VLNKGSVDRGFGRCQVFRKYVTNMKSYSN--GTKDILS 879
Score = 190 (71.9 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
R R P VGDKF+SR GQKG+ + D+PFTD G+ PDI+ NPHGFPSRMT+G
Sbjct: 973 RQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVG 1028
Score = 150 (57.9 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 51/173 (29%), Positives = 77/173 (44%)
Query: 47 KNLTDKNFGKPPDKQN---EFLLTLGA--PHIASFDFMLDEGLDLAVEDIAPIEFEIYGK 101
K+LTD DK N FL G HI S++++++ L VE I ++
Sbjct: 91 KSLTDP-ISTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDV-DH 148
Query: 102 TLKLNIVKAAISEPKVPAGP--VGIHFNK--YYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + P+ P V F + P E R + Y+ P V + +
Sbjct: 149 NFYIKFTDIYLGFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYIRGRQR 208
Query: 158 GGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
+GR+P+ML+S +C L N TPAQ+ E P + GGYFIV G EK++
Sbjct: 209 VRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVI 261
Score = 112 (44.5 bits), Expect = 5.9e-41, Sum P(3) = 5.9e-41
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALE 824
++ G++Y G + + SG+ G + +F G ++YQ+L+HMV DK ++ R +
Sbjct: 1064 IDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPT 1123
Query: 825 DKLGPDGLVYVGAKLNERDPMYSY 848
+ DG + +G ERD + +Y
Sbjct: 1124 EGRSRDGGLRLGEM--ERDCLIAY 1145
Score = 38 (18.4 bits), Expect = 1.2e-19, Sum P(3) = 1.2e-19
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 615 IEWIGTFEQVFMDICITMKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQC 673
++WIG+ I I K+ +Y TH + + S + + I + D N P+ +Y
Sbjct: 369 LDWIGS------RIKINRKQMSYR--RTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVA 420
Query: 674 QMGKQTM 680
M ++ +
Sbjct: 421 NMARRVL 427
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 217 (81.4 bits), Expect = 7.4e-49, Sum P(4) = 7.4e-49
Identities = 56/160 (35%), Positives = 83/160 (51%)
Query: 610 LAAGNIEWIGTFEQVFMDICITMKEAYP----GIT---THRELSKTDFLSNLANLIPMPD 662
L+ G +E+I E+ + I +T ++ P I TH E+ + L ++IP PD
Sbjct: 652 LSEGIVEYIDAEEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPD 711
Query: 663 CNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMG 722
NQSPRN YQ MGKQ MG N++ + + L P P + L P G
Sbjct: 712 HNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAG 771
Query: 723 TNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMF 762
N VA+ Y+GY+ ED++ILN+S+ +RG +F+SMF
Sbjct: 772 QNVCVAIACYSGYNQEDSVILNQSAIDRG-----LFRSMF 806
Score = 193 (73.0 bits), Expect = 7.4e-49, Sum P(4) = 7.4e-49
Identities = 36/58 (62%), Positives = 42/58 (72%)
Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
R R P +GDKF+SR GQKG C + + EDLPFT G+VPDI+ NPH PSRMTIG L
Sbjct: 920 RSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQL 977
Score = 179 (68.1 bits), Expect = 7.4e-49, Sum P(4) = 7.4e-49
Identities = 87/353 (24%), Positives = 156/353 (44%)
Query: 273 KSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHL 332
K ++ +M+ EE Q +V + K R ++ +L +LPH+
Sbjct: 292 KDAQMMDLMRPSLEESFVIQ-SQEVALDYLGKRGSTMGTRE-QRIKFAREVLQKEMLPHV 349
Query: 333 D--DYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEI-MTG---GSLYLQLLKKE 384
++++ K ++T +L LD D + + + G G+L+ QL KK
Sbjct: 350 SVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKL 409
Query: 385 KSGTSAVL-----KESDIYA--AFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVI 437
L K+ + A A ++ +I S + LATGN + K+ + SG
Sbjct: 410 TKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTK----SG--- 462
Query: 438 MAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLN 494
+A+ +NR+ + +SH R ++ +E + ++PRQL WG +CP TP+G CGL+
Sbjct: 463 VAQVLNRLTFASTLSHLRRLNT-PIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVK 521
Query: 495 HLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQI 554
+L IS S+ + + + + ++ + SI A + ++G VG +
Sbjct: 522 NLAMMSYISVGSASQPILEFLEEWTTENLEEISD-LSSI-FSATKIFVNGMWVG--IHHQ 577
Query: 555 ATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
L+ LR+L+ G+ + + +V R EK + LY T PGR RP+
Sbjct: 578 PDKLLSTLRLLRRCGD-VSVEVSVVRDIR-EKELRLY------TDPGRCCRPL 622
Score = 120 (47.3 bits), Expect = 2.7e-41, Sum P(4) = 2.7e-41
Identities = 34/85 (40%), Positives = 44/85 (51%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPAN----KAL 823
GY G E MY+G G M AQIF G +YQRL+HMV DK ++ R P + +
Sbjct: 1014 GYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRS---RGPVQILTRQPV 1070
Query: 824 EDKLGPDGLVYVGAKLNERDPMYSY 848
E + GL + G ERD M S+
Sbjct: 1071 EGRSRDGGLRF-GEM--ERDCMISH 1092
Score = 116 (45.9 bits), Expect = 7.4e-49, Sum P(4) = 7.4e-49
Identities = 36/107 (33%), Positives = 46/107 (42%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKEV------GRVPIMLKSKRCHLR 180
P +AR YS P V TV K T EV G+VPIML+S+ C L
Sbjct: 109 PNQARIRNLTYSAPLFVDITKTVMTGSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLN 168
Query: 181 NLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPIAIKRN 227
L GE + GGYFI+ G EK++ NH K++
Sbjct: 169 EADDRDLTTMGECSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKS 215
Score = 38 (18.4 bits), Expect = 4.7e-27, Sum P(3) = 4.7e-27
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 429 LMQASGFVIMA-ENINRMR-YMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPD 486
++ S V++A E +N Y+ + SY E+RS + R + ++ +H +
Sbjct: 190 IINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTN 249
Query: 487 GTPCGL 492
P G+
Sbjct: 250 KGPVGI 255
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 345 (126.5 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 115/419 (27%), Positives = 198/419 (47%)
Query: 364 SIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGK 423
S+M +++ + L+ + +K+ + D+ RA+ I + + + +++GN + +
Sbjct: 377 SMMFEDLFKRMNWELKTIA-DKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNWTIKR 435
Query: 424 NSTLQLMQASGFVIMAENINRMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICP 481
M+ +G + + ++R+ Y+S + R S F++ R S PR L+ WG +CP
Sbjct: 436 FK----MERAG---VTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCP 488
Query: 482 VHTPDGTPCGLLNHLTTNCQISEYIPSK--VLAQIPSVLVSLGMLPLTPVIQSIPEQALM 539
TP+G CGL+ +L I+ + + ++ + + + + P+ + P +
Sbjct: 489 SDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPI--NNPN-VFL 545
Query: 540 VMLDGRIVGYILDQ--IATSLV---PKLRMLKIVGEKIPKSLEIVYLK-------RP--- 584
V ++G ++G L+ + +L K RM V + +Y+ RP
Sbjct: 546 VFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVI 605
Query: 585 -EKGMGLYPGLYLFTGPGRMLRPVMN-LAAGNIEWIGTFEQVFMDICITMKE-AYPGITT 641
E L +L R +R + L G IE++ E+ D I E TT
Sbjct: 606 VENRRPLVKQHHL-DELNRGIRKFDDFLLDGLIEYLDVNEE--NDSFIAWNEDQIEDRTT 662
Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTP 701
H E+ L A L+P P NQSPRN YQC MGKQ MG N + + +Y L P
Sbjct: 663 HLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYP 722
Query: 702 ASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
+P + + + D P G NA VAV+SY+GYD+EDA+ILNK+S +RG+ ++K+
Sbjct: 723 HAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKN 781
Score = 190 (71.9 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 41/93 (44%), Positives = 54/93 (58%)
Query: 857 VTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICS 916
V Y G E +E V +S+ E + I R R P +GDKF+SR GQKG+
Sbjct: 860 VPISYKGPEPSYIERVMVSANAEEDFLIK-----ILLRQTRIPEIGDKFSSRHGQKGVTG 914
Query: 917 VKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
+ ED+PF D G+ PD++ NPHGFPSRMT+G
Sbjct: 915 LIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVG 947
Score = 133 (51.9 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 39/112 (34%), Positives = 58/112 (51%)
Query: 741 MILNKSSYERGFAHGCIFKSMFIELES-GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQR 799
++ K Y F G + + ELE G+NY G + YSG+ G+ ++A I+ G V+YQ+
Sbjct: 959 LLEGKFHYGTAFG-GSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQK 1017
Query: 800 LRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGA-KLNE--RDPMYSY 848
L+HMV DK + R P KA+ + G G +L E RD + SY
Sbjct: 1018 LKHMVQDKMHAR---ARGP--KAVLTRQPTQGRSREGGLRLGEMERDCLISY 1064
Score = 112 (44.5 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R + YS P V + ++ + +GR+P+ML+ C L + +L +
Sbjct: 107 PHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKL 166
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYF+V G EK++
Sbjct: 167 NECPLDPGGYFVVRGQEKVI 186
Score = 39 (18.8 bits), Expect = 7.3e-41, Sum P(3) = 7.3e-41
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 25 VLLVFKVLKMILNQNTLSAPSLKNLTDKNFG 55
++++FK L ++ +Q S + + + FG
Sbjct: 243 IVVIFKALGVVSDQEIQSLIGIDSKSQNRFG 273
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 249 (92.7 bits), Expect = 1.0e-47, Sum P(4) = 1.0e-47
Identities = 62/160 (38%), Positives = 84/160 (52%)
Query: 613 GNIEWIGTFEQVFMDICITMKEA--YPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNM 670
G IE++ E+ D + +EA P TTH E+ L +A LIP P NQSPRN
Sbjct: 1108 GIIEYLDVNEE--NDSFLAWREAAIQPW-TTHLEIEPFTMLGCVAGLIPYPHHNQSPRNT 1164
Query: 671 YQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVI 730
YQC MGKQ +G N + LY L P + D L+ P G NA VAV+
Sbjct: 1165 YQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVM 1224
Query: 731 SYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYN 770
SY+GYD+EDA+++NK+S +RGF + K ++ N
Sbjct: 1225 SYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGN 1264
Score = 201 (75.8 bits), Expect = 1.0e-47, Sum P(4) = 1.0e-47
Identities = 35/56 (62%), Positives = 43/56 (76%)
Query: 894 RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
R R P +GDKF+SR GQKG+C + ED+PF+D G+ PDI+ NPHGFPSRMTIG
Sbjct: 1363 RSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIG 1418
Score = 134 (52.2 bits), Expect = 1.0e-47, Sum P(4) = 1.0e-47
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P R YS P V + ++ + + +G +PIML+S C L TP Q+
Sbjct: 112 PQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAAL 171
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
GE P + GGYFIV G EK++
Sbjct: 172 GECPMDPGGYFIVRGQEKVI 191
Score = 115 (45.5 bits), Expect = 1.0e-47, Sum P(4) = 1.0e-47
Identities = 56/223 (25%), Positives = 101/223 (45%)
Query: 288 GIHTQHDSKVFFG---QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFL 340
G+HT + + G ++F+ + E D +L +L H+ ++ K +
Sbjct: 289 GVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEARD-ILAGVVLNHVPVRRYNFRLKVI 347
Query: 341 CLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE--KSGTSAVLKESD-- 396
LS M ++ + LD +D + I G L + LL ++ K S + K D
Sbjct: 348 YLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQL-ISLLFEDCFKKFQSELKKSVDQA 406
Query: 397 IYAAFRASSIESAM---TNFLATG---NVSAGK-NSTLQLMQASGFVIMAENINRMRYMS 449
I A RA +++ T+ + G +S+G+ N M+ SG +++ ++R+ Y+S
Sbjct: 407 IAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSG---VSQVLSRLSYIS 463
Query: 450 HFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPC 490
+ R S F++ R + PR L+ WG +CP TP+G C
Sbjct: 464 CMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
Score = 105 (42.0 bits), Expect = 8.6e-38, Sum P(4) = 8.6e-38
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 765 LESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTK 811
+ G++Y G + + SGV G + IFFG + YQ+L+HMV DK +
Sbjct: 1454 ISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHAR 1500
Score = 40 (19.1 bits), Expect = 4.1e-31, Sum P(4) = 4.1e-31
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 863 GKEEMCVEVVRMSS-GFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKW 919
G++ +C +V+ F++ G + P+ + T+G AG+ G+ S K+
Sbjct: 1379 GQKGVCGIIVKQEDMPFSDLG-ICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKF 1435
Score = 39 (18.8 bits), Expect = 7.5e-19, Sum P(3) = 7.5e-19
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 421 AGKNSTLQLMQASGFVI 437
AG N+T+ +M SG+ I
Sbjct: 1215 AGHNATVAVMSYSGYDI 1231
Score = 38 (18.4 bits), Expect = 8.6e-38, Sum P(4) = 8.6e-38
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLT 183
D G + E + L +RC LR++T
Sbjct: 92 DINVGSPTSTEDNLDSVQLTPQRCRLRDMT 121
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 213 (80.0 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 50/124 (40%), Positives = 70/124 (56%)
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNW--RYQGVGKLYRL 698
TH E+ + L A++IP PD NQSPRN YQ MGKQ MG N+ R + + + L
Sbjct: 765 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFDQRMETMANI--L 822
Query: 699 QTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIF 758
P P + L P G NAIVA+ Y+GY+ ED++I+N+SS +RG +F
Sbjct: 823 YYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRG-----LF 877
Query: 759 KSMF 762
+S+F
Sbjct: 878 RSLF 881
Score = 187 (70.9 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 60/202 (29%), Positives = 92/202 (45%)
Query: 767 SGYNYYGTETM-YSGVDGSMMQAQIFFGVVHYQRLRHMVS-------DKWQTKDYFGRDP 818
SGYN + M S +D + ++ +F+ Y MV +K D G
Sbjct: 857 SGYNQEDSVIMNQSSIDRGLFRS-LFYRT--YSDSEKMVGLTVVERFEKPMRSDTIGM-- 911
Query: 819 ANKALEDKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRM 874
K DKL DG+V G +++ D + ++E + K ++ +
Sbjct: 912 -RKGTYDKLDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRST 970
Query: 875 SSGFTEGGSVT--PNC---AYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
+G + VT P+ + R+ + P +GDKFASR GQKG + + ED+PFT
Sbjct: 971 ENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTRE 1030
Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
G+ PD++ NPH PSRMTI L
Sbjct: 1031 GVTPDLIINPHAIPSRMTIAHL 1052
Score = 177 (67.4 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 85/355 (23%), Positives = 145/355 (40%)
Query: 272 RKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFKE-KLQYDLRHLNEVEICDYMLTNCILP 330
R +L M++ EEG Q D +V I K Q + H V ++ +LP
Sbjct: 322 RNDTPMLEMLKPCIEEGFVIQ-DREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLP 380
Query: 331 HLDDYWD----KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKS 386
H+ K L +M +L G +D D + + G L L + +
Sbjct: 381 HISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFT 440
Query: 387 GTSAVLK-------ESD--IY--AAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGF 435
+ L+ ESD IY +AS++ + LATGN K + AS
Sbjct: 441 RVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYALATGNWGEQKKA------ASAK 494
Query: 436 VIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGL 492
+++ ++R Y +SH R + ++ + ++PRQL WG +CP TP+G CGL
Sbjct: 495 AGVSQVLSRYTYASTLSHLRRTNT-PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 553
Query: 493 LNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD 552
+ +L C I+ PS+ + ++ M L + A V ++G VG +
Sbjct: 554 VKNLALMCYITVGTPSEPIIDF---MIQRNMEVLEEFEPQVTPNATKVFVNGVWVG--VH 608
Query: 553 QIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
+ + LV ++ L+ I + ++ R + +FT GR+ RP+
Sbjct: 609 RQPSHLVETMQALRR-RNMISHEVSLIRDIRERE-------FKIFTDAGRVCRPL 655
Score = 119 (46.9 bits), Expect = 1.3e-40, Sum P(4) = 1.3e-40
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
E GY G E MY+G G + AQ+F G +YQRLRHMV DK
Sbjct: 1087 EHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 1128
Score = 118 (46.6 bits), Expect = 1.2e-47, Sum P(4) = 1.2e-47
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 162 TKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
T +G++PIMLKSK C LR+L L + E P + GGYFI+ G EK++
Sbjct: 177 TVHIGKMPIMLKSKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEKVL 225
Score = 43 (20.2 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 66 LTLGAPHIASFDFMLDEGLDLAVEDIAP 93
+T+G P DFM+ +++ +E+ P
Sbjct: 563 ITVGTPSEPIIDFMIQRNMEV-LEEFEP 589
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 477 (173.0 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 194/714 (27%), Positives = 308/714 (43%)
Query: 289 IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSH 344
I+T + + G K + L E +L +L H++ ++ K + +
Sbjct: 303 IYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGI 362
Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKS----GTSAVLK--- 393
M ++ + +Q+D D + + + G L + L KK S VLK
Sbjct: 363 MARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPH 422
Query: 394 ---ESDIYAAFRASS--IESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYM 448
E D Y S I M L+TGN S + M+ +G + ++R+ Y+
Sbjct: 423 RTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFK----MERAG---VTHVLSRLSYI 475
Query: 449 SHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYI 506
S + R S F++ R S PR L+ +G +C TP+G CGL+ +L I+
Sbjct: 476 SALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDE 535
Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLK 566
+ + ++ + + + + + +V L+G I+G + + + V R L+
Sbjct: 536 EEEPIIKL-AYAFGIEDIHVISGRELHSHGTYLVYLNGAILG--ISRYPSLFVASFRKLR 592
Query: 567 IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRP---VMN-------------- 609
G KI + I ++ ++ + ++ T GR+ RP V N
Sbjct: 593 RSG-KISPFIGI-FINTHQRAV------FISTDGGRICRPLIIVQNGLPKVESKHIRLLK 644
Query: 610 ---------LAAGNIEWIGTFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPM 660
L G +E++ E+ I + ++ P TTH E+ L +A LIP
Sbjct: 645 EGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPD-TTHLEIEPFTILGAVAGLIPY 703
Query: 661 PDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL-YRLQTPASPFFRPVHYDTLDMDNF 719
P NQSPRN YQC MGKQ +G N + Q + L Y + P P + + + D
Sbjct: 704 PHHNQSPRNTYQCAMGKQAIGAIAYN-QLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKL 762
Query: 720 PMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYS 779
P G NA VA++SY+GYD+EDA++LNKSS +RGF +F + + N GT
Sbjct: 763 PAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPN--GTHDRIG 820
Query: 780 GVDGSMMQAQIFF--GVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDK--LGPDGLVYV 835
++ + GVV L + + Y + AL++ LG V
Sbjct: 821 DPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVES 880
Query: 836 GAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRI 895
G K PM +Y K E Y+ + V +++ T+ + R
Sbjct: 881 GYKAT---PM-TY-KAPEPGYI------------DKVMLTT--TDSDQTLIK---VLMRQ 918
Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
R P +GDKF+SR GQKG+C V ED+PF D G+ PDI+ NPHGFPSRMT+G
Sbjct: 919 TRRPELGDKFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVG 972
Score = 134 (52.2 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 763 IELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKA 822
I +E GYNY G + + SG+ G ++A IF G ++YQ+L+HMV DK + R +
Sbjct: 1006 ILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQ 1065
Query: 823 LEDKLGPDGLVYVGAKLNERDPMYSY 848
+ DG + +G ERD + +Y
Sbjct: 1066 PTEGRSRDGGLRLGEM--ERDCLIAY 1089
Score = 105 (42.0 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 37/163 (22%), Positives = 68/163 (41%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEP-KVPAGPVGIHFNKYY 130
H+ S+++ +D L V+ + ++ L + + P + A + +
Sbjct: 67 HLDSYNYFVDVDLKKIVQANEKVTSDVE-PWFYLKYLDIRVGAPVRTDADAIQASIS--- 122
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R Y V + ++ + +GR+P+ML+S +C L ++
Sbjct: 123 PHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAAL 182
Query: 191 GEHPDEWGGYFIVGGHEKLVRL---LINNRRNHPIAIKRNAWK 230
E P + GGYFIV G EK++ + L NR K+ W+
Sbjct: 183 NECPLDPGGYFIVKGTEKVILVQEQLSKNRIIVEAEPKKGLWQ 225
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 220 (82.5 bits), Expect = 4.0e-45, Sum P(5) = 4.0e-45
Identities = 49/122 (40%), Positives = 69/122 (56%)
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
TH E+ L LA++IP PD NQSPRN YQ MGKQ MG N++ + L
Sbjct: 728 THCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYY 787
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P P + L P G NAIVA++ Y+GY+ ED++I+N++S +RG +F+S
Sbjct: 788 PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRG-----LFRS 842
Query: 761 MF 762
+F
Sbjct: 843 IF 844
Score = 193 (73.0 bits), Expect = 4.0e-45, Sum P(5) = 4.0e-45
Identities = 47/136 (34%), Positives = 70/136 (51%)
Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
DKL DGL+ G +++ D + + E + K ++ + SG +
Sbjct: 880 DKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVD 939
Query: 881 GGSVTPN---CAYIGYRIQ--RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
VT N ++ R++ R P +GDKFASR GQKG + + ED+PF+ G+VPDI
Sbjct: 940 QVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDI 999
Query: 936 VFNPHGFPSRMTIGFL 951
+ NPH PSRMT+ L
Sbjct: 1000 IINPHAIPSRMTVAHL 1015
Score = 153 (58.9 bits), Expect = 4.0e-45, Sum P(5) = 4.0e-45
Identities = 59/218 (27%), Positives = 98/218 (44%)
Query: 393 KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MS 449
+E ++ A +++ I + + LATGN K S + + S + +NR + +S
Sbjct: 426 REFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVS------QVLNRYTFASTLS 479
Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSK 509
H R + ++ + ++PRQL WG +CP TP+G CGL+ +L+ +S PS
Sbjct: 480 HLRRTNT-PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPS- 537
Query: 510 VLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVG 569
A I L G+ L S A V ++G +G D L LR L+
Sbjct: 538 --APIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDP--AHLTETLRSLR--- 590
Query: 570 EKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
++ S E+ ++ + L LFT GR+ RP+
Sbjct: 591 RRLDISAEVSIVRDIRE-----KELRLFTDAGRICRPL 623
Score = 110 (43.8 bits), Expect = 4.0e-45, Sum P(5) = 4.0e-45
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
+G++PIML+S C L ++ ++L + E P + GGYFI+ G EK++
Sbjct: 152 IGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKVI 197
Score = 103 (41.3 bits), Expect = 5.9e-36, Sum P(5) = 5.9e-36
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
G+ G E MY G G + AQ+F G +YQRL+H+V DK
Sbjct: 1052 GFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDK 1091
Score = 38 (18.4 bits), Expect = 4.0e-45, Sum P(5) = 4.0e-45
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 130 YPTEARQTRSVYSGPFNV 147
+P EAR YS P V
Sbjct: 100 FPQEARLRNLTYSSPLYV 117
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 213 (80.0 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 54/143 (37%), Positives = 75/143 (52%)
Query: 620 TFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
T +F+D T Y T H E+ + L A++IP D NQSPRN YQ MGKQ
Sbjct: 694 TMISMFIDDLKTGTGYYNNFT-HCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQA 752
Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
MG N+ + + L P P + L P G NAIVA++ YTGY+ ED
Sbjct: 753 MGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQED 812
Query: 740 AMILNKSSYERGFAHGCIFKSMF 762
++I+N+SS +RG +F+S+F
Sbjct: 813 SLIMNQSSIDRG-----LFRSVF 830
Score = 182 (69.1 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 39/87 (44%), Positives = 51/87 (58%)
Query: 865 EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
E ++ V +SS + G A + R R P +GDKFASR GQKG + + ED+
Sbjct: 1065 ENGVIDTVMLSSN-SRGNKF----AKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDM 1119
Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIGFL 951
PF+ G+ PDI+ NPH PSRMTIG L
Sbjct: 1120 PFSSLGIFPDIIMNPHAVPSRMTIGHL 1146
Score = 170 (64.9 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 77/304 (25%), Positives = 134/304 (44%)
Query: 323 MLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-- 376
+L +LPH+ + K + +M +L G ++ D D + + G L
Sbjct: 360 LLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMA 419
Query: 377 --YLQLLKKEKSGTSAVL-------KESDIYAAFRA-SSIESAMTNFLATGNVSAGKNST 426
+ +K VL K D+ A R+ S I M LATGN GK+
Sbjct: 420 SSFSTYFRKMAKDVRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNW--GKDKD 477
Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
++++ +A+ +NR+ Y +SH R ++ +E + ++PRQL WG ICP
Sbjct: 478 GKVIRTG----VAQVLNRLTYSSCLSHLRRLNT-PLGREGKMAKPRQLHNTHWGMICPFE 532
Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
TP+G GL+ +L+ C IS + I L G+ L V + ++ + + L+
Sbjct: 533 TPEGQSVGLVKNLSLMCDISVGTSTN---NIYEFLTEWGLESLDEVPPELMKEKVKLFLN 589
Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
G+ VG +QI +L+ L L+ + P++ + + E + +FT GR
Sbjct: 590 GKWVG-CFNQI-DNLIETLYELRRRCDISPEASIVRDVNSKE--------IKIFTDSGRA 639
Query: 604 LRPV 607
+RP+
Sbjct: 640 MRPL 643
Score = 125 (49.1 bits), Expect = 8.3e-39, Sum P(4) = 8.3e-39
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GY YG E +Y+G +G M++++IF G +YQRL+HMV DK + + +
Sbjct: 1183 GYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGR 1242
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + G ERD M S+
Sbjct: 1243 SRDGGLRFGEM--ERDCMISH 1261
Score = 103 (41.3 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
+GR+P+MLKS C + L ++ + GE + GGYFIV G EK++
Sbjct: 166 LGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVL 211
Score = 37 (18.1 bits), Expect = 5.4e-31, Sum P(4) = 5.4e-31
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 600 PGRMLRPVMNLAAGNIEWIGTFEQV 624
P +++ + L N +W+G F Q+
Sbjct: 576 PPELMKEKVKLFL-NGKWVGCFNQI 599
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 213 (80.0 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 54/143 (37%), Positives = 75/143 (52%)
Query: 620 TFEQVFMDICITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQT 679
T +F+D T Y T H E+ + L A++IP D NQSPRN YQ MGKQ
Sbjct: 694 TMISMFIDDLKTGTGYYNNFT-HCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQA 752
Query: 680 MGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMED 739
MG N+ + + L P P + L P G NAIVA++ YTGY+ ED
Sbjct: 753 MGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQED 812
Query: 740 AMILNKSSYERGFAHGCIFKSMF 762
++I+N+SS +RG +F+S+F
Sbjct: 813 SLIMNQSSIDRG-----LFRSVF 830
Score = 182 (69.1 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 39/87 (44%), Positives = 51/87 (58%)
Query: 865 EEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
E ++ V +SS + G A + R R P +GDKFASR GQKG + + ED+
Sbjct: 1065 ENGVIDTVMLSSN-SRGNKF----AKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDM 1119
Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIGFL 951
PF+ G+ PDI+ NPH PSRMTIG L
Sbjct: 1120 PFSSLGIFPDIIMNPHAVPSRMTIGHL 1146
Score = 170 (64.9 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 77/304 (25%), Positives = 134/304 (44%)
Query: 323 MLTNCILPHLDDY----WDKFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL-- 376
+L +LPH+ + K + +M +L G ++ D D + + G L
Sbjct: 360 LLRKEVLPHMGTHPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMA 419
Query: 377 --YLQLLKKEKSGTSAVL-------KESDIYAAFRA-SSIESAMTNFLATGNVSAGKNST 426
+ +K VL K D+ A R+ S I M LATGN GK+
Sbjct: 420 SSFSTYFRKMAKDVRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNW--GKDKD 477
Query: 427 LQLMQASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVH 483
++++ +A+ +NR+ Y +SH R ++ +E + ++PRQL WG ICP
Sbjct: 478 GKVIRTG----VAQVLNRLTYSSCLSHLRRLNT-PLGREGKMAKPRQLHNTHWGMICPFE 532
Query: 484 TPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLD 543
TP+G GL+ +L+ C IS + I L G+ L V + ++ + + L+
Sbjct: 533 TPEGQSVGLVKNLSLMCDISVGTSTN---NIYEFLTEWGLESLDEVPPELMKEKVKLFLN 589
Query: 544 GRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRM 603
G+ VG +QI +L+ L L+ + P++ + + E + +FT GR
Sbjct: 590 GKWVG-CFNQI-DNLIETLYELRRRCDISPEASIVRDVNSKE--------IKIFTDSGRA 639
Query: 604 LRPV 607
+RP+
Sbjct: 640 MRPL 643
Score = 125 (49.1 bits), Expect = 8.3e-39, Sum P(4) = 8.3e-39
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GY YG E +Y+G +G M++++IF G +YQRL+HMV DK + + +
Sbjct: 1183 GYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGR 1242
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + G ERD M S+
Sbjct: 1243 SRDGGLRFGEM--ERDCMISH 1261
Score = 103 (41.3 bits), Expect = 1.1e-44, Sum P(4) = 1.1e-44
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
+GR+P+MLKS C + L ++ + GE + GGYFIV G EK++
Sbjct: 166 LGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVL 211
Score = 37 (18.1 bits), Expect = 5.4e-31, Sum P(4) = 5.4e-31
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 600 PGRMLRPVMNLAAGNIEWIGTFEQV 624
P +++ + L N +W+G F Q+
Sbjct: 576 PPELMKEKVKLFL-NGKWVGCFNQI 599
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 234 (87.4 bits), Expect = 3.7e-43, Sum P(5) = 3.7e-43
Identities = 54/136 (39%), Positives = 72/136 (52%)
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
TH E+ + L A++IP PD NQSPRN YQ MGKQ MG N+ + L
Sbjct: 739 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 798
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P P + L P G NAIVA+ Y+GY+ ED+MI+N+SS +RG F+S
Sbjct: 799 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 858
Query: 761 MFIELESGYNYYGTET 776
+++ E Y TET
Sbjct: 859 -YMDQEKKYGMSITET 873
Score = 210 (79.0 bits), Expect = 8.7e-32, Sum P(4) = 8.7e-32
Identities = 55/196 (28%), Positives = 90/196 (45%)
Query: 767 SGYNYYGTETM-YSGVDGSMMQAQIFFGVVHYQRLRHM-VSDKWQTKDYFGRDPANKALE 824
SGYN + M S +D + ++ F + ++ M +++ ++
Sbjct: 831 SGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTY 890
Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
DKL DGL+ G +++ D + + E Y K + + +G +
Sbjct: 891 DKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVD 950
Query: 881 GGSVTPN---CAYIGYRIQRN--PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
VT N ++ R++ P +GDKFASR GQKG + + ED+PFT G+VPD+
Sbjct: 951 QVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDL 1010
Query: 936 VFNPHGFPSRMTIGFL 951
+ NPH PSRMT+ L
Sbjct: 1011 IINPHAIPSRMTVAHL 1026
Score = 165 (63.1 bits), Expect = 3.7e-43, Sum P(5) = 3.7e-43
Identities = 84/349 (24%), Positives = 146/349 (41%)
Query: 277 LLGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPH---LD 333
+L M++ E+G Q D + I + ++ ++ +L LPH L+
Sbjct: 310 MLEMLKPCVEDGFVIQ-DRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLE 368
Query: 334 DYWD-KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKE-KSGTSAV 391
+ K L +M +L D D + + G L QL K K T +
Sbjct: 369 GFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDI 428
Query: 392 LK----------ESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAEN 441
+ + ++ A A +I S + LATGN K + + +G +++
Sbjct: 429 FRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKA---MSSRAG---VSQV 482
Query: 442 INRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTT 498
+NR Y +SH R + ++ + ++PRQL WG +CP TP+G CGL+ +L+
Sbjct: 483 LNRYTYSSTLSHLRRTNT-PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSL 541
Query: 499 NCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSL 558
IS + + + I + L GM PL + A V ++G V + + + L
Sbjct: 542 MSCIS--VGTDPMPII-TFLSEWGMEPLEDYVPHQSPDATRVFVNG--VWHGVHRNPARL 596
Query: 559 VPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
+ LR L+ G+ P+ I ++ E L +FT GR+ RP+
Sbjct: 597 METLRTLRRKGDINPEVSMIRDIREKE--------LKIFTDAGRVYRPL 637
Score = 129 (50.5 bits), Expect = 3.7e-43, Sum P(5) = 3.7e-43
Identities = 25/42 (59%), Positives = 28/42 (66%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
E GY G E MY+G G + AQIFFG +YQRLRHMV DK
Sbjct: 1061 EHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDK 1102
Score = 125 (49.1 bits), Expect = 3.7e-43, Sum P(5) = 3.7e-43
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 154 DGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLV 210
D ++G F +GR+PIML+SK C+L T + L + E P + GGYFI+ G EK++
Sbjct: 159 DSESGKVF---IGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVL 212
Score = 41 (19.5 bits), Expect = 3.7e-43, Sum P(5) = 3.7e-43
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 82 EGLDLAVEDIAP--IEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRS 139
E L +E +A E + + +++ K +++P V H YP EAR
Sbjct: 65 EDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTH--ALYPQEARLRNL 122
Query: 140 VYSGPFNVTV 149
YS V V
Sbjct: 123 TYSSGLFVDV 132
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 376 (137.4 bits), Expect = 2.7e-42, Sum P(3) = 2.7e-42
Identities = 118/383 (30%), Positives = 182/383 (47%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVH 455
D+ R I + M N ++TGN S + M G + + ++R+ Y+S +
Sbjct: 398 DVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLSRLSYISALGMMT 450
Query: 456 R-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQ 513
R S F++ R S PR L+ WG +CP TP+G CGL+ +L I+ + + +
Sbjct: 451 RISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVK 510
Query: 514 IPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILD-QIATSLVPKLRMLKIVGEKI 572
+ S L + L S P +V L+G I+G I D + + +R + E +
Sbjct: 511 LASNLGVEDVNLLCGEELSYPN-VFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFV 569
Query: 573 PKSLEI----VYLKRPEKGMGLYPGLYLFTG-PGRMLRPVMNLAAG--NIE-WIGTFEQV 624
S + VY+ + G P + + P + + LA G N E ++
Sbjct: 570 SISTNLTDRCVYISS-DGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVE 628
Query: 625 FMDI-----C-ITMKE-AYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGK 677
++D+ C I + E TTH E+ L A LIP P NQSPRN YQC MGK
Sbjct: 629 YLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGK 688
Query: 678 QTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDM 737
Q MGT N R + +Y L P P + + ++ + P G NA VAV+SY+GYD+
Sbjct: 689 QAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDI 748
Query: 738 EDAMILNKSSYERGFAHGCIFKS 760
EDA++LNK+S +RGF ++K+
Sbjct: 749 EDALVLNKASLDRGFGRCLVYKN 771
Score = 131 (51.2 bits), Expect = 2.7e-42, Sum P(3) = 2.7e-42
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 96 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 155
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYFIV G EK++
Sbjct: 156 NECPLDPGGYFIVKGVEKVI 175
Score = 73 (30.8 bits), Expect = 2.7e-42, Sum P(3) = 2.7e-42
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 844 QQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 898
Query: 910 GQKG 913
GQKG
Sbjct: 899 GQKG 902
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 258 (95.9 bits), Expect = 7.3e-42, Sum P(4) = 7.3e-42
Identities = 63/169 (37%), Positives = 94/169 (55%)
Query: 610 LAAGNIEWIGTFEQVFMDICIT---MKE---AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T ++E AY TH E+ + L A++IP PD
Sbjct: 657 VASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDH 716
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 717 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 776
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES--GYN 770
N+IVA+ SYTGY+ ED++I+N+S+ +RGF ++S + E ES GY+
Sbjct: 777 NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS-YKEQESKKGYD 824
Score = 225 (84.3 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 69/202 (34%), Positives = 96/202 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 786 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQG 839
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMS 875
A+ DKL DGL+ G +++ D + E+E+ + + C +R S
Sbjct: 840 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTS 899
Query: 876 -SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
+G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 900 ETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE 959
Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 960 GITPDIIINPHAIPSRMTIGHL 981
Score = 139 (54.0 bits), Expect = 7.3e-42, Sum P(4) = 7.3e-42
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 462
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 463 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 520 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 575
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 576 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 626
Score = 125 (49.1 bits), Expect = 7.3e-42, Sum P(4) = 7.3e-42
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 113 (44.8 bits), Expect = 7.3e-42, Sum P(4) = 7.3e-42
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1058
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 228 (85.3 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 52/136 (38%), Positives = 71/136 (52%)
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
TH E+ + L A++IP PD NQSPRN YQ MGKQ MG N+ + L
Sbjct: 746 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYY 805
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P P + L P G NAIVA+ Y+GY+ ED+MI+N+SS +RG F+S
Sbjct: 806 PQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 865
Query: 761 MFIELESGYNYYGTET 776
++++E ET
Sbjct: 866 -YMDIEKRQGMKALET 880
Score = 200 (75.5 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 55/196 (28%), Positives = 92/196 (46%)
Query: 767 SGYNYYGTETM-YSGVDGSMMQAQIFFGVVHYQRLRHMVS-DKWQTKDYFGRDPANKALE 824
SGYN + M S +D + ++ F + ++ + M + + ++
Sbjct: 838 SGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTY 897
Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+KL DGL+ G +++ D + ++E +Y K + + SG +
Sbjct: 898 EKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVD 957
Query: 881 GGSVTPN---CAYIGYRIQRN--PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
+T N ++ R++ P +GDKFASR GQKG V + ED+PFT G+VPD+
Sbjct: 958 QVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDL 1017
Query: 936 VFNPHGFPSRMTIGFL 951
+ NPH PSRMT+ L
Sbjct: 1018 IINPHAIPSRMTVAHL 1033
Score = 156 (60.0 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 58/215 (26%), Positives = 99/215 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFR 452
++ A ++ +I + LATGN + + + +G +++ +NR Y +SH R
Sbjct: 438 NVTLAVKSQTITDGLRYSLATGNWGEQRKA---MSSRAG---VSQVLNRYTYSSTLSHLR 491
Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
+ ++ + ++PRQL WG +CP TP+G CGL+ +L+ IS PS+
Sbjct: 492 RTNT-PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSE--- 547
Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
I L G+ L + S + V ++G VG D A LV +R L+ G+
Sbjct: 548 PILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAA--LVDFMRELRRSGDLS 605
Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
P+ I ++ E +FT GR+ RP+
Sbjct: 606 PEVSIIRDIREKE--------FKIFTDAGRVYRPL 632
Score = 125 (49.1 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
+ GY G E MY+G G + AQ+FFG +YQRLRHMV DK
Sbjct: 1068 DHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDK 1109
Score = 118 (46.6 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 151 WSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
W + T TK +G+VPIML+SK C LR+L + E E P + GGYF++ G EK+
Sbjct: 146 WIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKV 205
Query: 210 V 210
+
Sbjct: 206 L 206
Score = 51 (23.0 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNV 147
K ++ K IS+P G H +P EAR YS P V
Sbjct: 81 KRYEITFGKIYISKPSQTEGDGSTH--AVFPQEARLRNLTYSSPLYV 125
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 228 (85.3 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 52/136 (38%), Positives = 71/136 (52%)
Query: 641 THRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQT 700
TH E+ + L A++IP PD NQSPRN YQ MGKQ MG N+ + L
Sbjct: 746 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYY 805
Query: 701 PASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKS 760
P P + L P G NAIVA+ Y+GY+ ED+MI+N+SS +RG F+S
Sbjct: 806 PQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 865
Query: 761 MFIELESGYNYYGTET 776
++++E ET
Sbjct: 866 -YMDIEKRQGMKALET 880
Score = 200 (75.5 bits), Expect = 4.5e-30, Sum P(4) = 4.5e-30
Identities = 55/196 (28%), Positives = 92/196 (46%)
Query: 767 SGYNYYGTETM-YSGVDGSMMQAQIFFGVVHYQRLRHMVS-DKWQTKDYFGRDPANKALE 824
SGYN + M S +D + ++ F + ++ + M + + ++
Sbjct: 838 SGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTY 897
Query: 825 DKLGPDGLVYVGAKLNERDPMYSYWK----ESENRYVTCRYSGKEEMCVEVVRMSSGFTE 880
+KL DGL+ G +++ D + ++E +Y K + + SG +
Sbjct: 898 EKLDEDGLIAPGVRVSGEDIIIGKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVD 957
Query: 881 GGSVTPN---CAYIGYRIQRN--PTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
+T N ++ R++ P +GDKFASR GQKG V + ED+PFT G+VPD+
Sbjct: 958 QVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDL 1017
Query: 936 VFNPHGFPSRMTIGFL 951
+ NPH PSRMT+ L
Sbjct: 1018 IINPHAIPSRMTVAHL 1033
Score = 156 (60.0 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 58/215 (26%), Positives = 99/215 (46%)
Query: 396 DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRY---MSHFR 452
++ A ++ +I + LATGN + + + +G +++ +NR Y +SH R
Sbjct: 438 NVTLAVKSQTITDGLRYSLATGNWGEQRKA---MSSRAG---VSQVLNRYTYSSTLSHLR 491
Query: 453 AVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLA 512
+ ++ + ++PRQL WG +CP TP+G CGL+ +L+ IS PS+
Sbjct: 492 RTNT-PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSE--- 547
Query: 513 QIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIVGEKI 572
I L G+ L + S + V ++G VG D A LV +R L+ G+
Sbjct: 548 PILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAA--LVDFMRELRRSGDLS 605
Query: 573 PKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
P+ I ++ E +FT GR+ RP+
Sbjct: 606 PEVSIIRDIREKE--------FKIFTDAGRVYRPL 632
Score = 125 (49.1 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
+ GY G E MY+G G + AQ+FFG +YQRLRHMV DK
Sbjct: 1068 DHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDK 1109
Score = 118 (46.6 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 151 WSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
W + T TK +G+VPIML+SK C LR+L + E E P + GGYF++ G EK+
Sbjct: 146 WIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKV 205
Query: 210 V 210
+
Sbjct: 206 L 206
Score = 51 (23.0 bits), Expect = 1.9e-41, Sum P(5) = 1.9e-41
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNV 147
K ++ K IS+P G H +P EAR YS P V
Sbjct: 81 KRYEITFGKIYISKPSQTEGDGSTH--AVFPQEARLRNLTYSSPLYV 125
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 258 (95.9 bits), Expect = 6.3e-41, Sum P(4) = 6.3e-41
Identities = 63/169 (37%), Positives = 94/169 (55%)
Query: 610 LAAGNIEWIGTFEQVFMDICIT---MKE---AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T ++E AY TH E+ + L A++IP PD
Sbjct: 659 VASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDH 718
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 719 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 778
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES--GYN 770
N+IVA+ SYTGY+ ED++I+N+S+ +RGF ++S + E ES GY+
Sbjct: 779 NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRS-YKEQESKKGYD 826
Score = 225 (84.3 bits), Expect = 2.2e-30, Sum P(3) = 2.2e-30
Identities = 69/202 (34%), Positives = 96/202 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 788 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQG 841
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTCRYSGKEEMCVEVVRMS 875
A+ DKL DGL+ G +++ D + E+E+ + + C +R S
Sbjct: 842 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTS 901
Query: 876 -SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDS 929
+G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 902 ETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE 961
Query: 930 GLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 962 GITPDIIINPHAIPSRMTIGHL 983
Score = 130 (50.8 bits), Expect = 6.3e-41, Sum P(4) = 6.3e-41
Identities = 74/301 (24%), Positives = 128/301 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSH-MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------ 376
+LPH+ D+ + K L + M +L G +LD D + + G L
Sbjct: 348 MLPHVGVSDFCETKKAYFLGYYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFR 407
Query: 377 --YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQ 431
+ LLK+ + + K+ ++ A + I + LATGN K + Q
Sbjct: 408 GMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----Q 463
Query: 432 ASGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGT 488
A V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 464 ARAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 520
Query: 489 PCGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIV 547
GL+ +L IS PS +L L M L + + A + ++G V
Sbjct: 521 AVGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWV 576
Query: 548 GYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPV 607
G D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP+
Sbjct: 577 GIHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPL 627
Query: 608 M 608
+
Sbjct: 628 L 628
Score = 125 (49.1 bits), Expect = 6.3e-41, Sum P(4) = 6.3e-41
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 111 PNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 170
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 171 DLCELNECPLDPGGYFIINGSEKVL 195
Score = 113 (44.8 bits), Expect = 6.3e-41, Sum P(4) = 6.3e-41
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1021 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1060
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 280 (103.6 bits), Expect = 6.1e-40, Sum P(3) = 6.1e-40
Identities = 88/272 (32%), Positives = 134/272 (49%)
Query: 610 LAAGNIEWIGTFEQVFMDICITMKE----AYPG-ITTHRELSKTDFLSNLANLIPMPDCN 664
L G +E++ E+ D I + E A PG I TH E+ L +A LIP P N
Sbjct: 645 LTHGLVEYLDVNEE--NDSLIALYEDDITANPGAIVTHLEIEPFTVLGAVAGLIPYPHHN 702
Query: 665 QSPRNMYQCQMGKQTMGTPCLNWRYQGVGKL-YRLQTPASPFFRPVHYDTLDMDNFPMGT 723
QSPRN YQC MGKQ +G N +++ + L Y + P P + + ++ D P G
Sbjct: 703 QSPRNTYQCAMGKQAIGAIAYN-QFRRIDTLLYFMVYPQQPMVKTKTIELIEYDKLPAGQ 761
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
NA VAV+SY+GYD+EDA++LNK+S +RGF + + ++L+ N+ T+ + +G+
Sbjct: 762 NATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRKNTVQLKKYPNH--TQDILAGMRV 819
Query: 784 SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERD 843
IF +Q L + ++ + G+ ANK + G L GA+ +R
Sbjct: 820 DENNKPIF----QHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTL---GAQQEQRA 872
Query: 844 PMYSYWKESENRYVTCRYSGKEEMCVEVVRMS 875
ES +R Y G E ++ V MS
Sbjct: 873 A------ES-HREAPAFYKGPEPSYIDQVMMS 897
Score = 216 (81.1 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 57/152 (37%), Positives = 75/152 (49%)
Query: 817 DPANKAL--EDKLGPDGLVYVGAKL-------------NERDPMYSYWKESE----NRYV 857
D NK + LGPDGL VG+++ N D +E +R
Sbjct: 820 DENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRAAESHREA 879
Query: 858 TCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSV 917
Y G E ++ V MS + + + R R P +GDKF+SR GQKG+C +
Sbjct: 880 PAFYKGPEPSYIDQVMMSVSDNDQALIK-----VLLRQTRRPELGDKFSSRHGQKGVCGI 934
Query: 918 KWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
EDLPF DSG+ PDI+ NPHGFPSRMT+G
Sbjct: 935 IVQQEDLPFNDSGISPDIIMNPHGFPSRMTVG 966
Score = 157 (60.3 bits), Expect = 6.1e-40, Sum P(3) = 6.1e-40
Identities = 58/187 (31%), Positives = 87/187 (46%)
Query: 39 NTLSAPSLKN--LTDK-NFGKPPDKQN---EFLLTLGA--PHIASFDFMLDEGL------ 84
N L P K LTD+ N K DK N FL G H+ S+++ +D L
Sbjct: 19 NELLKPEYKGKKLTDEINTAK--DKWNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKA 76
Query: 85 -DLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSG 143
+L + D+ P E Y K L + + + S+P G+ P E R YS
Sbjct: 77 NELVLSDVDP---EFYVKYLDIRVGHKSTSKP-------GVKEVILPPHECRLRDLTYSA 126
Query: 144 PFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIV 203
P V V ++ K E+GR+P+ML+S +C L ++ A + + E P + GGYF+V
Sbjct: 127 PIYVDVEYTRGRKIIRHNDLEIGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVV 186
Query: 204 GGHEKLV 210
G EK++
Sbjct: 187 NGTEKVI 193
Score = 145 (56.1 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 37/110 (33%), Positives = 57/110 (51%)
Query: 740 AMILNKS-SYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQ 798
A +LN S Y F + I +E G++Y G + +YSG+ G +QA IFFG ++YQ
Sbjct: 976 AGVLNGSLEYGTCFGGSKLEDMSKILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQ 1035
Query: 799 RLRHMVSDKWQTKDYFGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSY 848
+L+HMV DK + R + + DG + +G ERD + +Y
Sbjct: 1036 KLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM--ERDCVIAY 1083
Score = 132 (51.5 bits), Expect = 6.1e-40, Sum P(3) = 6.1e-40
Identities = 76/345 (22%), Positives = 146/345 (42%)
Query: 289 IHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD----DYWDKFLCLSH 344
+ TQ + + G+ K + L++++ + I+ HL + +K L ++
Sbjct: 294 VFTQQQALYYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIAT 353
Query: 345 MTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKKEKSGTSA----VLKESD 396
M ++ + +D D + + + G L + L KK S A VLK+
Sbjct: 354 MARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPS 413
Query: 397 IYAAFRASSIESAMTNFLATG-N--VSAGKNSTLQL-MQASGFVIMAENINRMRYMSHFR 452
+ F A + +N + G N +S G S + M+ +G + ++R+ Y+S
Sbjct: 414 RTSEFDALLSINIHSNNITMGLNRAISTGNWSLKRFKMERAG---VTHVLSRLSYISALG 470
Query: 453 AVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKV 510
+ R S F++ R S PR L+ +G +C TP+G CGL+ +L I+
Sbjct: 471 MMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITT---DDE 527
Query: 511 LAQIPSVLVSLGMLPLTPVIQSI--PEQALMVMLDGRIVGYILDQIATSLVPKLRMLKIV 568
A + + ++LG P+ + + + V L+G ++G + V R L+ V
Sbjct: 528 EAPVKKLCIALGCEPIFALDSATLHVDGNFGVYLNGTLIG--TTRFPVKFVHDFRHLRRV 585
Query: 569 GEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAG 613
G K+ + I Y + + ++ T GR+ RP++ + G
Sbjct: 586 G-KVSAFISI-YTNTHHQAV------HIATDGGRICRPLIIVENG 622
Score = 41 (19.5 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 421 AGKNSTLQLMQASGFVI 437
AG+N+T+ +M SG+ I
Sbjct: 759 AGQNATVAVMSYSGYDI 775
Score = 40 (19.1 bits), Expect = 6.6e-16, Sum P(3) = 6.6e-16
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 282 QSLHEEGIHTQHDSKVFFGQIFKEK 306
Q+L +G+ + S++F GQ+F K
Sbjct: 830 QALGPDGLG-EVGSRIFNGQVFANK 853
Score = 39 (18.8 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 297 VFFGQIFKEKLQY 309
+FFG I+ +KL++
Sbjct: 1027 IFFGPIYYQKLKH 1039
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 257 (95.5 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 72/206 (34%), Positives = 105/206 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICIT---MKE---AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T ++E AY TH E+ + L A++IP PD
Sbjct: 657 VASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDH 716
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 717 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 776
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
N+IVA+ SYTGY+ ED++I+N+S+ +RGF F+S+F Y Y + G D
Sbjct: 777 NSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD- 824
Query: 784 SMMQAQIFFGVVHY--QRLRHMVSDK 807
Q +IF Q +RH + DK
Sbjct: 825 ---QEEIFEKPTRETCQGMRHAIYDK 847
Score = 192 (72.6 bits), Expect = 3.7e-28, Sum P(3) = 3.7e-28
Identities = 65/204 (31%), Positives = 96/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 786 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQG 839
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW---KESENRYVTC--RYSGKEEMCVEVVR 873
A+ DKL DGL+ G +++ D + E+++ + RY+ ++ C +R
Sbjct: 840 MRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRD--CSTFLR 897
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ E +
Sbjct: 898 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVRVYI 957
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMT+G L
Sbjct: 958 IEGITPDIIINPHAIPSRMTVGHL 981
Score = 142 (55.0 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 75/300 (25%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 347 VLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 407 MFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAH----QA 462
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R V+ ++ + ++PRQL WG +CP TP+G
Sbjct: 463 RAGV--SQVLNRLTFASTLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 520 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 575
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 576 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 626
Score = 125 (49.1 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 32/85 (37%), Positives = 44/85 (51%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSW--DGKAGGTFTKE---VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V + + DG+ + +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 116 (45.9 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
E GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1017 EYGYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDK 1058
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 256 (95.2 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 72/206 (34%), Positives = 104/206 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM-----KE-AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T KE AY TH E+ + L A++IP PD
Sbjct: 582 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 641
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 642 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 701
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
N+IVA+ SYTGY+ ED++I+N+S+ +RGF F+S+F Y Y + G D
Sbjct: 702 NSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD- 749
Query: 784 SMMQAQIFFGVVHY--QRLRHMVSDK 807
Q ++F Q +RH + DK
Sbjct: 750 ---QEEVFEKPTRETCQGMRHAIYDK 772
Score = 226 (84.6 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 71/204 (34%), Positives = 97/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 711 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQG 764
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVR 873
A+ DKL DGL+ G +++ D + E E RY+ ++ C +R
Sbjct: 765 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRD--CSTFLR 822
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 823 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 882
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 883 CEGITPDIIINPHAIPSRMTIGHL 906
Score = 139 (54.0 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 272 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 331
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 332 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 387
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 388 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 444
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 445 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 500
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 501 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 551
Score = 124 (48.7 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 35 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 94
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 95 DLCELNECPLDPGGYFIINGSEKVL 119
Score = 113 (44.8 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 944 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 983
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 256 (95.2 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 72/206 (34%), Positives = 104/206 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM-----KE-AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T KE AY TH E+ + L A++IP PD
Sbjct: 650 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 709
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 710 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 769
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
N+IVA+ SYTGY+ ED++I+N+S+ +RGF F+S+F Y Y + G D
Sbjct: 770 NSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD- 817
Query: 784 SMMQAQIFFGVVHY--QRLRHMVSDK 807
Q ++F Q +RH + DK
Sbjct: 818 ---QEEVFEKPTRETCQGMRHAIYDK 840
Score = 226 (84.6 bits), Expect = 2.4e-31, Sum P(3) = 2.4e-31
Identities = 71/204 (34%), Positives = 97/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 779 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQG 832
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVR 873
A+ DKL DGL+ G +++ D + E E RY+ ++ C +R
Sbjct: 833 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRD--CSTFLR 890
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 891 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 950
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 951 CEGITPDIIINPHAIPSRMTIGHL 974
Score = 139 (54.0 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 340 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 400 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 455
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 456 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 512
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 513 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 568
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 569 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 619
Score = 124 (48.7 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 162
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 163 DLCELNECPLDPGGYFIINGSEKVL 187
Score = 113 (44.8 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1012 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1051
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 256 (95.2 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 72/206 (34%), Positives = 104/206 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM-----KE-AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T KE AY TH E+ + L A++IP PD
Sbjct: 650 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 709
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 710 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 769
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
N+IVA+ SYTGY+ ED++I+N+S+ +RGF F+S+F Y Y + G D
Sbjct: 770 NSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD- 817
Query: 784 SMMQAQIFFGVVHY--QRLRHMVSDK 807
Q ++F Q +RH + DK
Sbjct: 818 ---QEEVFEKPTRETCQGMRHAIYDK 840
Score = 225 (84.3 bits), Expect = 3.1e-31, Sum P(3) = 3.1e-31
Identities = 71/204 (34%), Positives = 97/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 779 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQG 832
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVR 873
A+ DKL DGL+ G +++ D + E E RY+ ++ C +R
Sbjct: 833 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRD--CSTFLR 890
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 891 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 950
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 951 CEGITPDIIINPHAIPSRMTIGHL 974
Score = 139 (54.0 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 340 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 399
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 400 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 455
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 456 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 512
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 513 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 568
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 569 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 619
Score = 124 (48.7 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 103 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 162
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 163 DLCELNECPLDPGGYFIINGSEKVL 187
Score = 113 (44.8 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1012 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1051
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 256 (95.2 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 72/206 (34%), Positives = 104/206 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM-----KE-AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T KE AY TH E+ + L A++IP PD
Sbjct: 657 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 716
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 717 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 776
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
N+IVA+ SYTGY+ ED++I+N+S+ +RGF F+S+F Y Y + G D
Sbjct: 777 NSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD- 824
Query: 784 SMMQAQIFFGVVHY--QRLRHMVSDK 807
Q ++F Q +RH + DK
Sbjct: 825 ---QEEVFEKPTRETCQGMRHAIYDK 847
Score = 226 (84.6 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 71/204 (34%), Positives = 97/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 786 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQG 839
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVR 873
A+ DKL DGL+ G +++ D + E E RY+ ++ C +R
Sbjct: 840 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRD--CSTFLR 897
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 898 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 957
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHL 981
Score = 139 (54.0 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 462
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 463 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 520 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 575
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 576 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 626
Score = 124 (48.7 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 113 (44.8 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1058
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 256 (95.2 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 72/206 (34%), Positives = 104/206 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM-----KE-AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T KE AY TH E+ + L A++IP PD
Sbjct: 657 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 716
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 717 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 776
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
N+IVA+ SYTGY+ ED++I+N+S+ +RGF F+S+F Y Y + G D
Sbjct: 777 NSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD- 824
Query: 784 SMMQAQIFFGVVHY--QRLRHMVSDK 807
Q ++F Q +RH + DK
Sbjct: 825 ---QEEVFEKPTRETCQGMRHAIYDK 847
Score = 226 (84.6 bits), Expect = 2.5e-31, Sum P(3) = 2.5e-31
Identities = 71/204 (34%), Positives = 97/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 786 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQG 839
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVR 873
A+ DKL DGL+ G +++ D + E E RY+ ++ C +R
Sbjct: 840 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRD--CSTFLR 897
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 898 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 957
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHL 981
Score = 139 (54.0 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 462
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 463 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 520 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 575
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 576 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 626
Score = 124 (48.7 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 113 (44.8 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1058
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 256 (95.2 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 72/206 (34%), Positives = 104/206 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM-----KE-AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T KE AY TH E+ + L A++IP PD
Sbjct: 657 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 716
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 717 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 776
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
N+IVA+ SYTGY+ ED++I+N+S+ +RGF F+S+F Y Y + G D
Sbjct: 777 NSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD- 824
Query: 784 SMMQAQIFFGVVHY--QRLRHMVSDK 807
Q ++F Q +RH + DK
Sbjct: 825 ---QEEVFEKPTRETCQGMRHAIYDK 847
Score = 225 (84.3 bits), Expect = 3.2e-31, Sum P(3) = 3.2e-31
Identities = 71/204 (34%), Positives = 97/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 786 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQG 839
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVR 873
A+ DKL DGL+ G +++ D + E E RY+ ++ C +R
Sbjct: 840 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRD--CSTFLR 897
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 898 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 957
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHL 981
Score = 139 (54.0 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 462
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 463 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 520 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 575
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 576 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 626
Score = 124 (48.7 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 113 (44.8 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1058
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 256 (95.2 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 72/206 (34%), Positives = 104/206 (50%)
Query: 610 LAAGNIEWIGTFEQVFMDICITM-----KE-AYPGITTHRELSKTDFLSNLANLIPMPDC 663
+A+G +E+I T E+ + + +T KE AY TH E+ + L A++IP PD
Sbjct: 657 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 716
Query: 664 NQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGT 723
NQSPRN YQ MGKQ MG N+ + + L P P + L P G
Sbjct: 717 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 776
Query: 724 NAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
N+IVA+ SYTGY+ ED++I+N+S+ +RGF F+S+F Y Y + G D
Sbjct: 777 NSIVAIASYTGYNQEDSVIMNRSAVDRGF-----FRSVF------YRSYKEQESKKGFD- 824
Query: 784 SMMQAQIFFGVVHY--QRLRHMVSDK 807
Q ++F Q +RH + DK
Sbjct: 825 ---QEEVFEKPTRETCQGMRHAIYDK 847
Score = 225 (84.3 bits), Expect = 3.2e-31, Sum P(3) = 3.2e-31
Identities = 71/204 (34%), Positives = 97/204 (47%)
Query: 767 SGYNYYGTETMY-SGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANK---- 821
+GYN + M S VD FF V Y+ + S K ++ P +
Sbjct: 786 TGYNQEDSVIMNRSAVDRG------FFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQG 839
Query: 822 ---ALEDKLGPDGLVYVGAKLNERDPMYSYW-----KESENRYVTCRYSGKEEMCVEVVR 873
A+ DKL DGL+ G +++ D + E E RY+ ++ C +R
Sbjct: 840 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRD--CSTFLR 897
Query: 874 MS-SGFTEGGSVTPNC-AY----IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFT 927
S +G + VT N Y I R R P +GDKFASR GQKG C +++ ED+PFT
Sbjct: 898 TSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 957
Query: 928 DSGLVPDIVFNPHGFPSRMTIGFL 951
G+ PDI+ NPH PSRMTIG L
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHL 981
Score = 139 (54.0 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 74/300 (24%), Positives = 128/300 (42%)
Query: 328 ILPHL--DDYWD--KFLCLSHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL------- 376
+LPH+ D+ + K L +M +L G +LD D + + G L
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406
Query: 377 -YLQLLKKEKSGTSAVL---KESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQA 432
+ LLK+ + + K+ ++ A + I + LATGN K + QA
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAH----QA 462
Query: 433 SGFVIMAENINRMRY---MSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTP 489
V ++ +NR+ + +SH R ++ ++ + ++PRQL WG +CP TP+G
Sbjct: 463 RAGV--SQVLNRLTFASTLSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHA 519
Query: 490 CGLLNHLTTNCQISEYI-PSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVG 548
GL+ +L IS PS +L L M L + + A + ++G VG
Sbjct: 520 VGLVKNLALMAYISVGSQPSPIL----EFLEEWSMENLEEISPAAIADATKIFVNGCWVG 575
Query: 549 YILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVM 608
D L+ LR L+ + I + ++ R E+ + +Y T GR+ RP++
Sbjct: 576 IHKDP--EQLMNTLRKLRRQMDIIVSEVSMIRDIR-EREIRIY------TDAGRICRPLL 626
Score = 124 (48.7 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 33/85 (38%), Positives = 43/85 (50%)
Query: 131 PTEARQTRSVYSGPFNV----TVAWSWDGKAGGTFTKE-VGRVPIMLKSKRCHLRNLTPA 185
P EAR YS P V TV + + K +G++PIML+S C L LT
Sbjct: 110 PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDR 169
Query: 186 QLIERGEHPDEWGGYFIVGGHEKLV 210
L E E P + GGYFI+ G EK++
Sbjct: 170 DLCELNECPLDPGGYFIINGSEKVL 194
Score = 113 (44.8 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
GY+ G E +Y+G G + +QIF G +YQRL+HMV DK
Sbjct: 1019 GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1058
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 196 (74.1 bits), Expect = 8.8e-28, Sum P(3) = 8.8e-28
Identities = 51/138 (36%), Positives = 71/138 (51%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVR 873
FG+ + D L DG ++GA ++ D + ES + + + E V+ V
Sbjct: 829 FGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADH-SIKLKHTERGIVQKVV 887
Query: 874 MSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVP 933
+SS EG N A + R R+P +GDKF+S GQKG+ ++ PFT G+VP
Sbjct: 888 LSSN-DEG----KNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVP 942
Query: 934 DIVFNPHGFPSRMTIGFL 951
DIV NPH FPSR T G L
Sbjct: 943 DIVINPHAFPSRQTPGQL 960
Score = 190 (71.9 bits), Expect = 8.8e-28, Sum P(3) = 8.8e-28
Identities = 100/403 (24%), Positives = 169/403 (41%)
Query: 381 LKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAE 440
++K SG LK + Y AS I + ++ +TG A + ++ + SG V
Sbjct: 426 MQKHLSGDGD-LKPIEHY--LDASVITNGLSRAFSTG---AWSHPFRKMERVSGVVANLG 479
Query: 441 NINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNC 500
N ++ + R R + + R WG +C + TPDG CGL+ N
Sbjct: 480 RANPLQTLIDLRRT-RQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVK----NM 534
Query: 501 QISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVP 560
+ + ++ L + L + GM L + V+L+G VG D + S V
Sbjct: 535 SLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCAD--SESFVA 592
Query: 561 KLRMLKIVGEKIPKSLEIVYLKRPEK-------GMGLYPGLYLFTGPG-RMLRPVMN--- 609
+L+ + E +P+ +EI K + G L P L + + +P
Sbjct: 593 ELKSRRRQSE-LPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFD 651
Query: 610 --LAAGNIEWIGTFEQVFMDICITMKEAY--PGITTHRELSKTDFLSNLANLIPMPDCNQ 665
L G +E IG E+ + +K+ P I TH EL + L ++P + +
Sbjct: 652 HLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCAVVPFANHDH 711
Query: 666 SPRNMYQCQMG-KQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTN 724
R +YQ Q +Q +G N + +L P P F+ + + L + G N
Sbjct: 712 GRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQN 771
Query: 725 AIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELES 767
AIVAV + GY+ ED++++NK+S ERG +S E+++
Sbjct: 772 AIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDA 814
Score = 104 (41.7 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
+G++ +G E +Y+G G MM++ IF G YQRL HM DK
Sbjct: 1007 AGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDK 1047
Score = 70 (29.7 bits), Expect = 8.8e-28, Sum P(3) = 8.8e-28
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 165 VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKL 209
+G +P+M+KS C + ++G+ + GGYF++ G EK+
Sbjct: 173 IGSIPVMVKSILCKTSE-KGKENCKKGDCAFDQGGYFVIKGAEKV 216
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 217 (81.4 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 139 QQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 193
Query: 910 GQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
GQKG+C + P ED+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 194 GQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKL 235
Score = 154 (59.3 bits), Expect = 8.8e-26, Sum P(2) = 8.8e-26
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 695 LYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAH 754
+Y L P P + + ++ + P G NA VAV+SY+GYD+EDA++LNK+S +RGF
Sbjct: 1 MYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGR 60
Query: 755 GCIFKS 760
++K+
Sbjct: 61 CLVYKN 66
Score = 128 (50.1 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 768 GYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKL 827
GYNY G + + SG+ G ++A I+FG V+YQ+L+HMV DK + R + +
Sbjct: 272 GYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 331
Query: 828 GPDGLVYVGAKLNERDPMYSY 848
DG + +G ERD + Y
Sbjct: 332 SRDGGLRLGEM--ERDCLIGY 350
Score = 41 (19.5 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 421 AGKNSTLQLMQASGFVI 437
AG+N+T+ +M SG+ I
Sbjct: 27 AGQNATVAVMSYSGYDI 43
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 181 (68.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
MGKQ MGT N R + +Y L P P + + ++ + P G NA VAV+SY+G
Sbjct: 1 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSG 60
Query: 735 YDMEDAMILNKSSYERGFAHGCIFKS 760
YD+EDA++LNK+S +RGF ++K+
Sbjct: 61 YDIEDALVLNKASLDRGFGRCLVYKN 86
Score = 73 (30.8 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 850 KESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRA 909
++ + + V Y G + +E V +SS + + + R R P +GDKF+SR
Sbjct: 159 QQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIK-----MLLRQTRRPEIGDKFSSRH 213
Query: 910 GQKG 913
GQKG
Sbjct: 214 GQKG 217
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 160 (61.4 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 71/308 (23%), Positives = 134/308 (43%)
Query: 281 MQSLHEEGIHTQHDSKVFFG-QIFKEKLQYDLRHLNEVEICDYMLTNCILPHLD--DYWD 337
++ + I TQ + + G ++ ++++ ++E +L + IL H+ ++
Sbjct: 269 LEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNF 328
Query: 338 KFLCL-SHMTCKLFHVVQGMVQLDSEDSIMLQEIMTGGSL----YLQLLKK-----EKSG 387
+ C+ + + + + QG ++D D + + G L + L KK +K
Sbjct: 329 RAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIA 388
Query: 388 TSAVLKES----DIYAAFRASSIESAMTNFLATGNVSAGKNSTLQLMQASGFVIMAENIN 443
+ K+ D+ R I + M N ++TGN S + M G + + ++
Sbjct: 389 DQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFK----MDRQG---VTQVLS 441
Query: 444 RMRYMSHFRAVHR-GSYFQEMRS-SEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQ 501
R+ Y+S + R S F++ R S PR L+ WG +CP TP+G CGL+ +L
Sbjct: 442 RLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTH 501
Query: 502 ISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQIATSLVPK 561
I+ + + ++ S L + L S P +V L+G I+G I D LV
Sbjct: 502 ITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPN-VFLVFLNGNILGVIRDH--KKLVNT 558
Query: 562 LRMLKIVG 569
R+++ G
Sbjct: 559 FRLMRRAG 566
Score = 131 (51.2 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 131 PTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKEVGRVPIMLKSKRCHLRNLTPAQLIER 190
P E R YS P V + ++ + +GR+PIML+S C L TPA+ +
Sbjct: 99 PHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 191 GEHPDEWGGYFIVGGHEKLV 210
E P + GGYFIV G EK++
Sbjct: 159 NECPLDPGGYFIVKGVEKVI 178
>UNIPROTKB|C9JS83 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0007566
"embryo implantation" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IEA]
InterPro:IPR007644 InterPro:IPR015712 Pfam:PF04563
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 HGNC:HGNC:20454 GO:GO:0017126 HOGENOM:HOG000213667
IPI:IPI00917431 ProteinModelPortal:C9JS83 SMR:C9JS83 STRING:C9JS83
Ensembl:ENST00000438748 ArrayExpress:C9JS83 Bgee:C9JS83
Uniprot:C9JS83
Length = 128
Score = 214 (80.4 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 47/122 (38%), Positives = 66/122 (54%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL LAV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKA 157
+ + I+ A IS P VP G + N YP E R RS Y G + W+ +G +
Sbjct: 68 FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRGKLTADINWAVNGIS 126
Query: 158 GG 159
G
Sbjct: 127 KG 128
>UNIPROTKB|C9JJG2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0007566
"embryo implantation" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IEA]
InterPro:IPR007644 InterPro:IPR015712 Pfam:PF04563
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 HGNC:HGNC:20454 GO:GO:0017126 IPI:IPI00917238
ProteinModelPortal:C9JJG2 SMR:C9JJG2 STRING:C9JJG2
Ensembl:ENST00000430769 HOGENOM:HOG000213667 ArrayExpress:C9JJG2
Bgee:C9JJG2 Uniprot:C9JJG2
Length = 114
Score = 197 (74.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 44/106 (41%), Positives = 59/106 (55%)
Query: 38 QNTLSAPSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFE 97
+N S PSLK+LTD ++G P ++Q L L H+ SF++ + EGL LAV+ I P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 98 IYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSG 143
+ + I+ A IS P VP G + N YP E R RS Y G
Sbjct: 68 FKDERISFTILDAVISPPTVPKGTICKEAN-VYPAECRGRRSTYRG 112
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 139 (54.0 bits), Expect = 5.9e-13, Sum P(4) = 5.9e-13
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
+R +VGDK A R G KG+ S+ P ED+P+ G D+V NP G PSRM +G
Sbjct: 885 KRKVSVGDKLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLG 938
Score = 85 (35.0 bits), Expect = 5.9e-13, Sum P(4) = 5.9e-13
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 438 MAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLT 497
+AE N+ R A+ G +E + R + +G ICP+ TP+G GL+ L
Sbjct: 405 LAEITNKRR----LSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLA 460
Query: 498 TNCQISEY 505
T +I+ Y
Sbjct: 461 TYSRINRY 468
Score = 72 (30.4 bits), Expect = 5.9e-13, Sum P(4) = 5.9e-13
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 43 APSLKNLTDKNFGKPPDKQNEFLLTLGAPHIASFDFMLDEGLDLAVEDIAPIEFEIYGKT 102
A + +T K++ + P+ N + L + SF + +EGL +E+I+PI+ + G
Sbjct: 8 ADAATGITRKSYAQLPEVVN--VPNLIEMQLQSFVWFQEEGLRELIEEISPIK-DFVGNR 64
Query: 103 LKLNIVKAAISEPKV 117
L+L + EP++
Sbjct: 65 LELEFIGYEFREPRL 79
Score = 64 (27.6 bits), Expect = 5.9e-13, Sum P(4) = 5.9e-13
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 721 MGTNAIVAVISYTGYDMEDAMILNK 745
+G N +VA +S+ G++ EDA+IL++
Sbjct: 724 LGQNCVVAFMSWQGFNYEDAIILSE 748
Score = 43 (20.2 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 820 NKALEDKLGPDGLVYVGAKLNERDPMYSYW 849
NK +GP GL A + RD YS++
Sbjct: 410 NKRRLSAMGPGGLSRERAGFDVRDVHYSHY 439
Score = 41 (19.5 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 37/165 (22%), Positives = 59/165 (35%)
Query: 564 MLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEWIGTFEQ 623
++ +G I E V + + + G+Y + GR L NL W+ FE
Sbjct: 122 LMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHT-NLIPSRGAWL-EFET 179
Query: 624 VFMDIC---ITMKEAYPGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
D+ I + P T R + +D L ++ NL + D N R+ Q + +
Sbjct: 180 SNRDVISVKIDGRRKIPVSTLLRAIGYSDDL-DILNLFEVID-NDPERHYIQSSIDRD-- 235
Query: 681 GTPCLNWRYQGVGKLYRLQTPASP-------------FFRPVHYD 712
P + + +Y P P FF P HYD
Sbjct: 236 --PLIKDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYD 278
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 27/122 (22%), Positives = 47/122 (38%)
Query: 728 AVISYTGYDMEDAMIL-NKSSYERG---FAHGCIFKSMFIELESGYNYYGTETMYSGVDG 783
AVI+ G +E +L + S+ E G C+ M + G+NY +
Sbjct: 697 AVIN-KGQKIEAGQVLADSSATENGELALGQNCVVAFMSWQ---GFNYEDAIIL-----S 747
Query: 784 SMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALED--KLGPDGLVYVGAKLNE 841
+ + F +H + D + RD N E +L DG++ +GA++
Sbjct: 748 ERLVREDAFTSIHITKHELEAHDTKLGGEEITRDIPNVGEESLRELDEDGIIRIGAEVGP 807
Query: 842 RD 843
D
Sbjct: 808 DD 809
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 128 (50.1 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 30/73 (41%), Positives = 39/73 (53%)
Query: 880 EGGSVTPNCAYI--GYRIQ-RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIV 936
+G + P + Y +Q R + GDK A R G KG+ S P ED+P+ G DI+
Sbjct: 896 DGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIM 955
Query: 937 FNPHGFPSRMTIG 949
NP G PSRM IG
Sbjct: 956 LNPLGVPSRMNIG 968
Score = 93 (37.8 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
Q S F+ + + + A+ G +E E R + +G +CP+ TP+G
Sbjct: 465 QLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNI 524
Query: 491 GLLNHLTTNCQISEY 505
GL+N L++ +++E+
Sbjct: 525 GLINSLSSFAKVNEF 539
Score = 72 (30.4 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 74 ASFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPK 116
+S+ + LDEGL +DI+PIE + G L L + ++ EPK
Sbjct: 35 SSYQWFLDEGLREMFQDISPIE-DFTGN-LSLEFIDYSLGEPK 75
Score = 63 (27.2 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
Identities = 9/33 (27%), Positives = 23/33 (69%)
Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
++++ +G N +V +++ GY+ EDA+I+++
Sbjct: 746 SMELGELALGRNVLVGFMTWDGYNYEDAIIMSE 778
Score = 57 (25.1 bits), Expect = 1.6e-05, Sum P(4) = 1.6e-05
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 766 ESGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
E+G +Y G G ++ GV++ +L HMV DK
Sbjct: 1005 EAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMVDDK 1046
Score = 46 (21.3 bits), Expect = 5.8e-11, Sum P(4) = 5.8e-11
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 543 DGRI-VGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGP 600
DG + VG + + T L + R+L I GEK + + L+ P G G+ + +F
Sbjct: 837 DGDLLVGKVTPKGVTELTAEERLLHAIFGEKA-REVRDTSLRVPHGGGGIILDVKVFNRE 895
Query: 601 -GRMLRPVMN 609
G L P +N
Sbjct: 896 DGDELPPGVN 905
Score = 42 (19.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 827 LGPDGLVYVGAKLNERDPMYSYW 849
LGP GL A RD YS++
Sbjct: 488 LGPGGLTRERAGFEVRDVHYSHY 510
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 145 (56.1 bits), Expect = 9.4e-12, Sum P(5) = 9.4e-12
Identities = 33/74 (44%), Positives = 41/74 (55%)
Query: 879 TEGGSVTPNCAYIG--Y-RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
T+GG + P I Y ++R GDK A R G KG+ S P ED+P+ + G DI
Sbjct: 1072 TQGGDLAPGVIKIVKVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLEDGTPVDI 1131
Query: 936 VFNPHGFPSRMTIG 949
V NP G PSRM IG
Sbjct: 1132 VLNPLGVPSRMNIG 1145
Score = 100 (40.3 bits), Expect = 9.4e-12, Sum P(5) = 9.4e-12
Identities = 26/103 (25%), Positives = 44/103 (42%)
Query: 404 SSIESAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQE 462
+ +E+ M L VSA Q S F+ ++ + + A+ G +E
Sbjct: 503 ADVENLMPQDLVNAKPVSAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRE 562
Query: 463 MRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
E R + +G +CP+ TP+G GL+N L + +EY
Sbjct: 563 RAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLAVFARANEY 605
Score = 62 (26.9 bits), Expect = 9.4e-12, Sum P(5) = 9.4e-12
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
D+ +G N +VA + + GY+ ED++++++ E
Sbjct: 812 DIGELALGQNLLVAFMPWNGYNFEDSILISERLVE 846
Score = 47 (21.6 bits), Expect = 9.4e-12, Sum P(5) = 9.4e-12
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPAN---KALEDKLGPDGLVYVGAKLNERD 843
F +H Q + D + D N AL KL G+V++GA++N D
Sbjct: 850 FTTIHIQEFTCVARDTKLGPEEITSDIPNVGESALA-KLDESGIVHIGAEVNAGD 903
Score = 39 (18.8 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 719 FPMGTNAIVAVISYTGYDM 737
FP+ + + AV+ Y GY +
Sbjct: 73 FPITSYSGYAVLEYVGYSL 91
Score = 37 (18.1 bits), Expect = 9.4e-12, Sum P(5) = 9.4e-12
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 637 PGITTHRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
P + ++S +S A LIP + + + R + M +Q + T
Sbjct: 668 PDKINYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPT 713
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 135 (52.6 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 47/159 (29%), Positives = 66/159 (41%)
Query: 797 YQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP--DGLVYVGAKLNERDPMY----SYWK 850
Y RL+ ++ K K G P ++ E+ L G ++ A E+D +
Sbjct: 991 YARLKSLILGKTAVKGPKGIKPGSEITEELLETLTRGQWWMLALEGEQDAQIVEALNEQY 1050
Query: 851 ESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAG 910
E + R + R+ K VE VR G + ++R GDK A R G
Sbjct: 1051 ELQKRALDARFEDK----VEKVRRGDDLPPG---VMKMVKVFIAVKRKLQPGDKMAGRHG 1103
Query: 911 QKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
KG+ S P ED+PF G D NP G PSRM +G
Sbjct: 1104 NKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMNVG 1142
Score = 99 (39.9 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 402 RASSIE--SAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGS 458
R SS+E + M L +A Q S F+ ++ + + A+ G
Sbjct: 498 RMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGG 557
Query: 459 YFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
+E E R + +G +CP+ TP+G GL+N L T ++++Y
Sbjct: 558 LTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFARVNKY 604
Score = 72 (30.4 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
DM +G N +VA + + GY+ ED+++++ ER A +F S+ IE
Sbjct: 809 DMGELALGKNVVVAFMPWNGYNYEDSILIS----ER-IARDDVFTSIHIE 853
Score = 59 (25.8 bits), Expect = 0.00040, Sum P(4) = 0.00040
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 767 SGYNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
+G++ G ++ G G + G+ + +L H+V DK
Sbjct: 1234 AGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVDDK 1274
Score = 43 (20.2 bits), Expect = 1.1e-11, Sum P(4) = 1.1e-11
Identities = 23/90 (25%), Positives = 35/90 (38%)
Query: 80 LD-EGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTR 138
LD EG+ + + PI+ + +T L VK + +PK Y E Q
Sbjct: 48 LDGEGIMGVFQSVFPIKD--FNETSVLEFVKYELEKPK------------YDVEECMQRD 93
Query: 139 SVYSGPFNVT---VAWSWDGKAGGTFTKEV 165
YS P VT + + D G K++
Sbjct: 94 MTYSAPLKVTLRLIVFDVDEDTGAKSVKDI 123
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 136 (52.9 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 879 TEGGSVTPNCAYIG--Y-RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
T+G + P I Y ++R GDK A R G KG+ S P ED+P+ ++G DI
Sbjct: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096
Query: 936 VFNPHGFPSRMTIG 949
V NP G PSRM IG
Sbjct: 1097 VLNPLGVPSRMNIG 1110
Score = 103 (41.3 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 33/159 (20%), Positives = 63/159 (39%)
Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIE 407
KL + G ++D D + + I + G + + + V E + ++
Sbjct: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEM-----AENQFRVGLVRVERAVKERLSLGDLD 485
Query: 408 SAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
+ M + +SA Q S F+ ++ + + A+ G +E
Sbjct: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545
Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
E R + +G +CP+ TP+G GL+N L+ Q +EY
Sbjct: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584
Score = 56 (24.8 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
D+ +G N VA + + GY+ ED++++++
Sbjct: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSE 820
Score = 52 (23.4 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPAN--KALEDKLGPDGLVYVGAKLNERD 843
F +H Q L + D + D N +A KL G+VY+GA++ D
Sbjct: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881
Score = 49 (22.3 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 26/97 (26%), Positives = 44/97 (45%)
Query: 507 PSKVLAQIPSVLVSLGMLPLTPVIQS-IPEQALMVMLDGRIVGYILDQIATSLVPKLRML 565
P ++ A IP+V G L+ + +S I V +VG + + T L P+ ++L
Sbjct: 847 PEEITADIPNV----GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902
Query: 566 K-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
+ I GEK ++ L+ P G + +FT G
Sbjct: 903 RAIFGEKA-SDVKDSSLRVPNGVSGTVIDVQVFTRDG 938
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 136 (52.9 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 879 TEGGSVTPNCAYIG--Y-RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
T+G + P I Y ++R GDK A R G KG+ S P ED+P+ ++G DI
Sbjct: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDI 1096
Query: 936 VFNPHGFPSRMTIG 949
V NP G PSRM IG
Sbjct: 1097 VLNPLGVPSRMNIG 1110
Score = 101 (40.6 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 33/159 (20%), Positives = 63/159 (39%)
Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIE 407
KL + G ++D D + + I + G + + + V E + ++
Sbjct: 431 KLISIRNGKGEVDDIDHLGNRRIRSVGEM-----AENQFRVGLVRVERAVKERLSLGDLD 485
Query: 408 SAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
+ M L +SA Q S F+ ++ + + A+ G +E
Sbjct: 486 NVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGF 545
Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
E R + +G +CP+ TP+G GL+N L+ + +EY
Sbjct: 546 EVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEY 584
Score = 55 (24.4 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
D+ +G N +A + + GY+ ED++++++
Sbjct: 790 DLGELALGQNMRIAFMPWNGYNFEDSILVSE 820
Score = 54 (24.1 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPAN--KALEDKLGPDGLVYVGAKLNERD 843
F +H Q L + D + D N +A KL G+VY+GA++ D
Sbjct: 828 FTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGD 881
Score = 49 (22.3 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 546 IVGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
+VG + + T L P+ ++L+ I GEK ++ L+ P G + +FT G
Sbjct: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKA-SDVKDTSLRVPNSVAGTVIDVQVFTRDG 938
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 136 (52.9 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 879 TEGGSVTPNCAYIG--Y-RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
T+G + P I Y ++R GDK A R G KG+ S P ED+P+ ++G DI
Sbjct: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDI 1096
Query: 936 VFNPHGFPSRMTIG 949
V NP G PSRM IG
Sbjct: 1097 VLNPLGVPSRMNIG 1110
Score = 101 (40.6 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 33/159 (20%), Positives = 63/159 (39%)
Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIE 407
KL + G ++D D + + I + G + + + V E + ++
Sbjct: 431 KLISIRNGKGEVDDIDHLGNRRIRSVGEM-----AENQFRVGLVRVERAVKERLSLGDLD 485
Query: 408 SAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
+ M L +SA Q S F+ ++ + + A+ G +E
Sbjct: 486 NVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGF 545
Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
E R + +G +CP+ TP+G GL+N L+ + +EY
Sbjct: 546 EVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEY 584
Score = 55 (24.4 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
D+ +G N +A + + GY+ ED++++++
Sbjct: 790 DLGELALGQNMRIAFMPWNGYNFEDSILVSE 820
Score = 54 (24.1 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPAN--KALEDKLGPDGLVYVGAKLNERD 843
F +H Q L + D + D N +A KL G+VY+GA++ D
Sbjct: 828 FTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGD 881
Score = 49 (22.3 bits), Expect = 6.4e-10, Sum P(3) = 6.4e-10
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 546 IVGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
+VG + + T L P+ ++L+ I GEK ++ L+ P G + +FT G
Sbjct: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKA-SDVKDTSLRVPNSVAGTVIDVQVFTRDG 938
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 131 (51.2 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
+R +VGDK A R G KG+ + P ED+PF G +IV NP G PSRM IG
Sbjct: 843 KRKISVGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIG 896
Score = 98 (39.6 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
Q S F+ + + + A+ G +E E R + +G +CP+ TP+G
Sbjct: 401 QLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNI 460
Query: 491 GLLNHLTTNCQISEY 505
GL+ +LTT +++E+
Sbjct: 461 GLIGNLTTYARVNEF 475
Score = 61 (26.5 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
D +G N +VA + + GY+ EDA+++++ + +F S+ IE
Sbjct: 676 DHGELALGKNVLVAYMPWEGYNYEDAILISEKLVKED-----VFTSIHIE 720
Score = 52 (23.4 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 27/99 (27%), Positives = 41/99 (41%)
Query: 75 SFDFMLDEGLDLAVEDIAPIEFEIYGKTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEA 134
S+ + LDEGL +I+PI + G L L + + +PK Y E
Sbjct: 33 SYQWFLDEGLREVFREISPIT-DFTGN-LSLEFLDYYLGKPK------------YSVEEC 78
Query: 135 RQTRSVYSGPFNVTVAWSWDGKAGGTFTKEV--GRVPIM 171
++ YS P V V + + G +EV G P+M
Sbjct: 79 KERDFTYSAPLRVKVRLL-NKETGEIKEQEVFLGDFPLM 116
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 134 (52.2 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
I+R VGDK A R G KG+ S P ED+P+ + G +IV NP G PSRM +G
Sbjct: 1084 IKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVG 1138
Score = 99 (39.9 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 29/116 (25%), Positives = 49/116 (42%)
Query: 391 VLKESDIYAAFRASSIESAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINRMRYMS 449
V E I +E+ M + L VSA Q S F+ ++ + +
Sbjct: 477 VRMERAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKR 536
Query: 450 HFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
A+ G +E E R + +G +CP+ TP+G GL+ L+T +I+E+
Sbjct: 537 RLSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEH 592
Score = 64 (27.6 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
DM +G N +VA + + GY+ ED++++++
Sbjct: 798 DMGELALGQNVVVAFMPWGGYNFEDSILVSE 828
Score = 42 (19.8 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 546 IVGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
+VG I + T L P+ ++L+ I GEK + L+ P G G +F+ G
Sbjct: 891 LVGKITPKGETQLSPEEKLLRAIFGEKAG-DVRDTSLRVPPGVEGTVIGAKIFSRKG 946
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 125 (49.1 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 27/54 (50%), Positives = 31/54 (57%)
Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
+R VGDK A R G KGI S P D+P+ +G DI NP G PSRM IG
Sbjct: 1086 KRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIG 1139
Score = 104 (41.7 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
Q S F+ ++ + + A+ G +E E R + +G ICPV TP+G
Sbjct: 525 QLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNI 584
Query: 491 GLLNHLTTNCQISE 504
GL+N L+T +++E
Sbjct: 585 GLINTLSTYAKVNE 598
Score = 68 (29.0 bits), Expect = 5.9e-11, Sum P(3) = 5.9e-11
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 713 TLDMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
++D +G NA++A + + GY+ EDA+++++
Sbjct: 799 SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSE 831
Score = 38 (18.4 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 8/46 (17%), Positives = 24/46 (52%)
Query: 508 SKVLAQIPSVLVSLGMLPLTPVIQSIPEQALMVMLDGRIVGYILDQ 553
+K+ I ++ +G + ++ PE+ L+ + G G+++++
Sbjct: 882 AKIGTHIKPGMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNK 927
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 124 (48.7 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
++ N GDK A R G KG+ S P ED+P+ + G DI+ N G PSRM +G
Sbjct: 1085 VKHNLQPGDKMAGRHGNKGVISRIVPVEDMPYLEDGTPVDIILNSLGVPSRMNVG 1139
Score = 109 (43.4 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 47/216 (21%), Positives = 99/216 (45%)
Query: 296 KVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTCK-LFHVVQ 354
K FF +F EK +YDL + +++ D++ N +D ++ +T + HV++
Sbjct: 406 KAFFDGLFFEKERYDLSTVGRIKLNDHLGLNVS----ED-------ITVLTKDDIIHVIK 454
Query: 355 GMVQL-DSEDSIMLQEIMTGGSLYLQLLKK--EKSGTSAVLKESDIYAAFRAS-SIESAM 410
+V L D E S+ +I G+ ++ + + E +L+ + + +S + ++AM
Sbjct: 455 KLVLLRDGEGSV--DDIDHLGNRRVRSVGEFIENQFRIGILRLERMIMDYMSSVNFDNAM 512
Query: 411 T-NFLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPR 469
+F+ ++ Q S F+ ++ + + A+ G +E E R
Sbjct: 513 PCDFVNPKVLATVLKDFFSSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVR 572
Query: 470 QLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
+ +G ICP+ TP+G GL++ L +I+++
Sbjct: 573 DVHPTHYGRICPIETPEGQNIGLISSLAIYARINKH 608
Score = 70 (29.7 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
+D +G N +VA +S+ GY+ ED+++++ ++ +F S+ IE
Sbjct: 812 IDQGELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKD-----VFTSIHIE 857
Score = 54 (24.1 bits), Expect = 0.00045, Sum P(4) = 0.00045
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 773 GTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDK 807
G +Y G G ++ G ++ +L H+V DK
Sbjct: 1236 GQVDLYDGRIGEKFDRKVTVGYIYMLKLHHLVDDK 1270
Score = 39 (18.8 bits), Expect = 6.1e-11, Sum P(4) = 6.1e-11
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
++S +S A+LIP + N + R + M +Q +
Sbjct: 678 DVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 714
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 135 (52.6 bits), Expect = 1.0e-10, Sum P(6) = 1.0e-10
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 879 TEGGSVTPNCAYIG--Y-RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
T+G + P I Y ++R+ GDK A R G KG+ S P ED+P+ G+ DI
Sbjct: 1038 TQGDDLQPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISNVVPVEDMPYDQFGVPVDI 1097
Query: 936 VFNPHGFPSRMTIG 949
V NP G PSRM IG
Sbjct: 1098 VLNPLGVPSRMNIG 1111
Score = 89 (36.4 bits), Expect = 1.0e-10, Sum P(6) = 1.0e-10
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 419 VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGF 478
+SA Q S F+ ++ + + A+ G +E E R + +G
Sbjct: 499 ISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 558
Query: 479 ICPVHTPDGTPCGLLNHLTTNCQISEY 505
+CP+ TP+G GL+N L+ + +++
Sbjct: 559 VCPIETPEGPNIGLINSLSCYARTNDF 585
Score = 65 (27.9 bits), Expect = 1.0e-10, Sum P(6) = 1.0e-10
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
DM +G N +A + + GY+ ED+M+L++
Sbjct: 791 DMGELALGQNMRIAFMPWNGYNFEDSMLLSE 821
Score = 55 (24.4 bits), Expect = 1.0e-10, Sum P(6) = 1.0e-10
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPAN--KALEDKLGPDGLVYVGAKLNERD 843
F +H Q L + D + D N ++ KL G+VY+GA++N D
Sbjct: 829 FTTIHIQELTCIARDTKLGSEEITADIPNVGESALSKLDEAGVVYIGAEVNGGD 882
Score = 47 (21.6 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 546 IVGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
+VG + + T L P+ ++L+ I GEK ++ L+ P G + +FT G
Sbjct: 884 LVGKVTPKGETQLTPEEKLLRAIFGEKAA-DVKDSSLRVPNSVKGTIIDVQIFTRDG 939
Score = 39 (18.8 bits), Expect = 1.0e-10, Sum P(6) = 1.0e-10
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
+ ++S +S A+LIP + + + R + M +Q + T
Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGSNMQRQAVPT 693
Score = 37 (18.1 bits), Expect = 1.0e-10, Sum P(6) = 1.0e-10
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 238 DLGVYIRSVKRDESATNNV 256
D+G Y+ R +S+TN +
Sbjct: 343 DVGSYMSDTLRVDSSTNKL 361
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 133 (51.9 bits), Expect = 1.6e-10, Sum P(5) = 1.6e-10
Identities = 32/74 (43%), Positives = 40/74 (54%)
Query: 879 TEGGSVTPNCAYIG--Y-RIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDI 935
T+G + P I Y ++R GDK A R G KG+ S P ED+P+ + G DI
Sbjct: 1038 TQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKINPIEDMPYDEQGNPVDI 1097
Query: 936 VFNPHGFPSRMTIG 949
V NP G PSRM IG
Sbjct: 1098 VLNPLGVPSRMNIG 1111
Score = 97 (39.2 bits), Expect = 1.6e-10, Sum P(5) = 1.6e-10
Identities = 42/219 (19%), Positives = 84/219 (38%)
Query: 291 TQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYMLTNCILPHLDDYWDKFLCLSHMTC--- 347
T+ ++ F +F + +YDL + ++ + L+ +P DD L +
Sbjct: 378 TKDAAEALFQNLFFSEERYDLSKVGRMKF-NRRLS---IP--DDEGSGVLSKEDIVAVMK 431
Query: 348 KLFHVVQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIE 407
+ H+ G ++D D + + I + G + + + V E + +
Sbjct: 432 NIIHIRNGFDEVDDIDHLGNRRIRSVGEM-----AENQFRVGLVRVERAVRERLSLGDLN 486
Query: 408 SAMTNFLATGN-VSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSS 466
M L +SA Q S F+ ++ + + A+ G +E
Sbjct: 487 ELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGF 546
Query: 467 EPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
E R + +G +CP+ TP+G GL+N L + + + Y
Sbjct: 547 EVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSY 585
Score = 57 (25.1 bits), Expect = 1.6e-10, Sum P(5) = 1.6e-10
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNK 745
D+ + +G N +A + + GY+ ED++++++
Sbjct: 791 DLGDLALGQNMRIAFMPWNGYNFEDSILISE 821
Score = 52 (23.4 bits), Expect = 1.6e-10, Sum P(5) = 1.6e-10
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 792 FGVVHYQRLRHMVSDKWQTKDYFGRDPAN--KALEDKLGPDGLVYVGAKLNERD 843
F +H Q L + D + D N ++ KL G+VY+GA++ D
Sbjct: 829 FTTIHIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGD 882
Score = 47 (21.6 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 546 IVGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTGPG 601
+VG + + T L P+ ++L+ I GEK ++ L+ P G + +FT G
Sbjct: 884 LVGKVTPKGETQLTPEEKLLRAIFGEKA-SDVKDSSLRVPNSVKGTIIDVQVFTRDG 939
Score = 40 (19.1 bits), Expect = 1.6e-10, Sum P(5) = 1.6e-10
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 642 HRELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGT 682
+ ++S +S A+LIP + + + R + M +Q + T
Sbjct: 653 YMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPT 693
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 121 (47.7 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 895 IQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
++ N GDK A R G KG+ S P ED+P + G DI+ N G PSRM IG
Sbjct: 1087 VKHNLQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTPVDIILNSLGVPSRMNIG 1141
Score = 92 (37.4 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
Q S F+ ++ + + A+ G +E E R + +G ICP+ TP+G
Sbjct: 535 QLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNI 594
Query: 491 GLLNHLTTNCQISEY 505
GL++ L +I++Y
Sbjct: 595 GLISSLAIYAKINKY 609
Score = 72 (30.4 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 714 LDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIE 764
+D +G N +VA +S+ GY+ ED+++++ +R +F S+ IE
Sbjct: 813 IDRGELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRD-----VFTSIHIE 858
Score = 39 (18.8 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 644 ELSKTDFLSNLANLIPMPDCNQSPRNMYQCQMGKQTM 680
++S +S A+LIP + N + R + M +Q +
Sbjct: 679 DVSPKQIVSVAASLIPFLENNDANRALMGSNMQRQAV 715
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 125 (49.1 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
+R + GDK A R G KG+ P ED+PF G DI+ N HG P RM IG
Sbjct: 876 KRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIG 929
Score = 81 (33.6 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 17/75 (22%), Positives = 35/75 (46%)
Query: 431 QASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPC 490
Q S F+ ++ + + A+ G +E E R + +G +CP+ TP+G
Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494
Query: 491 GLLNHLTTNCQISEY 505
GL+ L+ +++ +
Sbjct: 495 GLIGSLSVYARVNPF 509
Score = 61 (26.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYE 749
D +G N +VA++ + G++ EDA+IL+ E
Sbjct: 709 DDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVE 743
Score = 57 (25.1 bits), Expect = 9.3e-08, Sum P(3) = 9.3e-08
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 543 DGRI-VGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT 598
DG I VG + + T L P+ R+L+ I GEK + + LK P G G+ +F+
Sbjct: 798 DGDILVGKVTPKGETELTPEERLLRAIFGEKA-REVRDTSLKVPHGESGKVIGIRVFS 854
Score = 48 (22.0 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 577 EIVYLKRPEKGMGLYPGLYL-FTGPGRMLRP--VMNLAAGNIEWIGTFEQVFMDI 628
EIVYL E+ + GR + P ++ AG +E++ + E +MD+
Sbjct: 527 EIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDV 581
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 126 (49.4 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 896 QRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
+R + GDK A R G KG+ P ED+PF G DI+ N HG P RM IG
Sbjct: 867 KRKISDGDKLAGRHGNKGVIGKILPVEDMPFLPDGTPVDIILNTHGVPRRMNIG 920
Score = 82 (33.9 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 34/155 (21%), Positives = 66/155 (42%)
Query: 353 VQGMVQLDSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTN 412
V+ V++D D + + T G L ++ S V++E A + ++ + N
Sbjct: 352 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQT-LIN 410
Query: 413 FLATGNVSAGKN--STLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQ 470
V+A K T QL Q F+ ++ + + A+ G +E E R
Sbjct: 411 IRPV--VAAIKEFFGTSQLSQ---FMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRD 465
Query: 471 LRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
+ +G +CP+ TP+G GL+ L+ +++ +
Sbjct: 466 VHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPF 500
Score = 60 (26.2 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 721 MGTNAIVAVISYTGYDMEDAMILNKSSYE 749
+G N +VA++ + G++ EDA+IL+ E
Sbjct: 706 LGKNLLVAIMPWEGHNYEDAIILSNRLVE 734
Score = 57 (25.1 bits), Expect = 5.7e-08, Sum P(3) = 5.7e-08
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 543 DGRI-VGYILDQIATSLVPKLRMLK-IVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFT 598
DG I VG + + T L P+ R+L+ I GEK + + LK P G G+ +F+
Sbjct: 789 DGDILVGKVTPKGETELTPEERLLRAIFGEKA-REVRDTSLKVPHGESGKVIGIRVFS 845
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 125 (49.1 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 902 GDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
GDK + R G KG+ S PAED+P+ G DI+ NP G PSRM +G
Sbjct: 1065 GDKMSGRHGNKGVISRIVPAEDMPYLADGTPVDIILNPLGVPSRMNVG 1112
Score = 82 (33.9 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 433 SGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFICPVHTPDGTPCGL 492
S F+ ++ + + A+ G + E R + T +G IC TP+G GL
Sbjct: 508 SQFMDQTNPLSEITHKRRISALGPGGLNRGRAGFEVRDVHTTHYGRICATETPEGATIGL 567
Query: 493 LNHLTTNCQISEY 505
+N L +I++Y
Sbjct: 568 INSLAIYAKINKY 580
Score = 63 (27.2 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 721 MGTNAIVAVISYTGYDMEDAMILNKS 746
+G N +VA +S+ GY+ ED+++++ +
Sbjct: 788 LGRNLVVAFLSWRGYNFEDSVVISSN 813
Score = 40 (19.1 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 489 PCGLLNHLTTNCQISEYIPSKVLAQ 513
PC ++N I E+ S L+Q
Sbjct: 485 PCEMINSKILGAVIREFFMSSALSQ 509
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 135 (52.6 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 29/58 (50%), Positives = 35/58 (60%)
Query: 893 YRIQ-RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
Y +Q R VGDK A R G KGI S P +D+P+ G D+VFNP G PSRM +G
Sbjct: 812 YILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVG 869
Score = 59 (25.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 721 MGTNAIVAVISYTGYDMEDAMILNK 745
+G N +VA + + GY+ EDA+++++
Sbjct: 659 LGKNVLVAYMPWEGYNFEDAVLISE 683
Score = 59 (25.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
S R + +G ICP+ T +G GL L + +I +
Sbjct: 411 SFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHW 451
Score = 42 (19.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
+DP ++ + +L G + + ERD +Y S YV+ R
Sbjct: 42 KDPDHE-ISFQLFAKGYQLLEPSIKERDAVYESLTYSSELYVSAR 85
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 135 (52.6 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 29/58 (50%), Positives = 35/58 (60%)
Query: 893 YRIQ-RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
Y +Q R VGDK A R G KGI S P +D+P+ G D+VFNP G PSRM +G
Sbjct: 812 YILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVG 869
Score = 59 (25.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 721 MGTNAIVAVISYTGYDMEDAMILNK 745
+G N +VA + + GY+ EDA+++++
Sbjct: 659 LGKNVLVAYMPWEGYNFEDAVLISE 683
Score = 59 (25.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
S R + +G ICP+ T +G GL L + +I +
Sbjct: 411 SFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHW 451
Score = 42 (19.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
+DP ++ + +L G + + ERD +Y S YV+ R
Sbjct: 42 KDPDHE-ISFQLFAKGYQLLEPSIKERDAVYESLTYSSELYVSAR 85
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 135 (52.6 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 29/58 (50%), Positives = 35/58 (60%)
Query: 893 YRIQ-RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
Y +Q R VGDK A R G KGI S P +D+P+ G D+VFNP G PSRM +G
Sbjct: 812 YILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVG 869
Score = 59 (25.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 721 MGTNAIVAVISYTGYDMEDAMILNK 745
+G N +VA + + GY+ EDA+++++
Sbjct: 659 LGKNVLVAYMPWEGYNFEDAVLISE 683
Score = 59 (25.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
S R + +G ICP+ T +G GL L + +I +
Sbjct: 411 SFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHW 451
Score = 42 (19.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
+DP ++ + +L G + + ERD +Y S YV+ R
Sbjct: 42 KDPDHE-ISFQLFAKGYQLLEPSIKERDAVYESLTYSSELYVSAR 85
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 135 (52.6 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 29/58 (50%), Positives = 35/58 (60%)
Query: 893 YRIQ-RNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
Y +Q R VGDK A R G KGI S P +D+P+ G D+VFNP G PSRM +G
Sbjct: 812 YILQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNVG 869
Score = 59 (25.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 721 MGTNAIVAVISYTGYDMEDAMILNK 745
+G N +VA + + GY+ EDA+++++
Sbjct: 659 LGKNVLVAYMPWEGYNFEDAVLISE 683
Score = 59 (25.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 465 SSEPRQLRTDAWGFICPVHTPDGTPCGLLNHLTTNCQISEY 505
S R + +G ICP+ T +G GL L + +I +
Sbjct: 411 SFRSRDIHPSHYGRICPIDTSEGINVGLTGSLAIHARIDHW 451
Score = 42 (19.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 816 RDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKESENRYVTCR 860
+DP ++ + +L G + + ERD +Y S YV+ R
Sbjct: 42 KDPDHE-ISFQLFAKGYQLLEPSIKERDAVYESLTYSSELYVSAR 85
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 105 (42.0 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 890 YIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIG 949
YIG IQ+ +GDK +R G KGI S D+P+ ++ + PDI + PSR+ IG
Sbjct: 758 YIG--IQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIG 815
Score = 79 (32.9 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 20/79 (25%), Positives = 44/79 (55%)
Query: 424 NSTLQLMQASGFVIMAENINRMRYMSH-FRA--VHRGSYFQEMRSSEPRQLRTDAWGFIC 480
N L+ + + V ++ +N + ++ F+ + G + + +++ R+L + G+I
Sbjct: 312 NIILENININPLVQYSDQVNNLSEINQKFKINMITTGLNSKFILNNDLRELPRNILGYIS 371
Query: 481 PVHTPDGTPCGLLNHLTTN 499
++T +G CGL+N+LTTN
Sbjct: 372 LINTNEGLTCGLVNYLTTN 390
Score = 65 (27.9 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 719 FPMGTNAIVAVISYTGYDMEDAMILNK 745
+ +G N +V SY GY+ EDA+I+++
Sbjct: 597 YSLGNNLLVGYGSYLGYEYEDAIIISR 623
Score = 47 (21.6 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 651 LSNLANLIPMPDCNQSPRNMYQCQMGKQ 678
LS + NLIP N S RN+ +M Q
Sbjct: 471 LSFIENLIPFIHYNDSIRNLMSIKMHTQ 498
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 12 FTLFPVNLRHIHEVLLVFKVLKMILNQNTLSAPSLKNLTD 51
+ LF N ++ + +K++ ++ N N S +++N+ +
Sbjct: 34 YILFLNNNINVKFNFIYYKIIILLTNININSIDTIQNINN 73
>UNIPROTKB|I3LR52 [details] [associations]
symbol:I3LR52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR015712 Pfam:PF00562 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00690000102214 EMBL:CU683880
Ensembl:ENSSSCT00000028377 Uniprot:I3LR52
Length = 80
Score = 120 (47.3 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 924 LPFTDSGLVPDIVFNPHGFPSRMTIGFL 951
+PF DSG+ PDI+ NPHGFPSRMT+G L
Sbjct: 1 MPFCDSGICPDIIMNPHGFPSRMTVGKL 28
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 951 951 0.00094 122 3 11 22 0.36 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 93
No. of states in DFA: 625 (66 KB)
Total size of DFA: 481 KB (2225 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:08
No. of threads or processors used: 24
Search cpu time: 76.45u 0.11s 76.56t Elapsed: 00:00:42
Total cpu time: 76.49u 0.11s 76.60t Elapsed: 00:00:50
Start: Thu Aug 15 12:34:31 2013 End: Thu Aug 15 12:35:21 2013