RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8410
(951 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 349 bits (897), Expect = e-104
Identities = 214/1021 (20%), Positives = 344/1021 (33%), Gaps = 182/1021 (17%)
Query: 72 HIASFDFMLDEGLDLAVEDIAPIEFEI----------YGKTLKLNIVKAAISEPKVPAGP 121
+ SF+ +D L + + + + E + +++ K +++P V
Sbjct: 30 QLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESD 89
Query: 122 VGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGTFTKE----------------- 164
H YP EAR YS V V +
Sbjct: 90 GVTH--ALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGK 147
Query: 165 --VGRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRRNHPI 222
+GR+PIML+SK C+L T + L + E P + GGYFI+ G EK++ + N
Sbjct: 148 VFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQ 207
Query: 223 AIKRNAWKNRGLLFSDLGVYIRSVKRDESATNNVLHFVTNGS---------ARFMFSHRK 273
+K IRS S + L G A + +
Sbjct: 208 -----VFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQD 262
Query: 274 SMCL-----LGMMQSLHEEGIHTQHDSKVFFGQIFKEKLQYDLRHLNEVEICDYM----- 323
+ LG++ + ++ K ++ + D++
Sbjct: 263 IPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGT 322
Query: 324 ----------------LTNCILPHL----DDYWDKFLCLSHMTCKLFHVVQGMVQLDSED 363
L LPH+ K L +M +L D D
Sbjct: 323 ALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRD 382
Query: 364 SIMLQEIMTGGSLYLQLLK-----------KEKSGTSAVLKESDIYAAFRASSIESAMTN 412
+ + G L QL K + T + ++ A A +I S +
Sbjct: 383 HFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKY 442
Query: 413 FLATGNVSAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLR 472
LATGN K + +G + +SH R + ++ + ++PRQL
Sbjct: 443 ALATGNWGEQKK---AMSSRAGVSQVLNRYTYSSTLSHLRRTNT-PIGRDGKLAKPRQLH 498
Query: 473 TDAWGFICPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQS 532
WG +CP TP+G CGL+ +L+ IS I + L GM PL +
Sbjct: 499 NTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP---MPIITFLSEWGMEPLEDYVPH 555
Query: 533 IPEQALMVMLDGRIVGYILD--------------------------------QIATSLVP 560
A V ++G G + +I T
Sbjct: 556 QSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGR 615
Query: 561 KLRMLKIVGEKIPKSLEIVYLKR---PEKGMGLYPGLYLFTGPGRMLRPVMNLAAGNIEW 617
R L IV + + + +++ + Y + L G +E+
Sbjct: 616 VYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEY 675
Query: 618 IGTFEQVFMDICITMKEAYPG-----------------------ITTHRELSKTDFLSNL 654
I E+ + I + ++ P TH E+ + L
Sbjct: 676 IDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVA 735
Query: 655 ANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTL 714
A++IP PD NQSPRN YQ MGKQ MG N+ + L P P + L
Sbjct: 736 ASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYL 795
Query: 715 DMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGT 774
P G NAIVA+ Y+GY+ ED+MI+N+SS +RG F+S +
Sbjct: 796 KFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQ---------- 845
Query: 775 ETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLGP----D 830
E Y + + + + D R + K P +
Sbjct: 846 EKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDE 905
Query: 831 GLVYVGAKLNERDPMYSYWKESENRYVTCRYSGKEEMCVEVVRMSSGFTEGGSVTPNCAY 890
+ + + + + +EN V + ++ V+
Sbjct: 906 EELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVK----------------- 948
Query: 891 IGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDLPFTDSGLVPDIVFNPHGFPSRMTIGF 950
+ R + P +GDKFASR GQKG + + ED+PFT G+VPD++ NPH PSRMT+
Sbjct: 949 VRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAH 1008
Query: 951 L 951
L
Sbjct: 1009 L 1009
Score = 73.8 bits (180), Expect = 7e-14
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 741 MILNKSSYERGFAH-GCIFKSMFIE------LESGYNYYGTETMYSGVDGSMMQAQIFFG 793
+L+K + G F + +E E GY G E MY+G G + AQIFFG
Sbjct: 1012 CLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFG 1071
Query: 794 VVHYQRLRHMVSDKWQ 809
+YQRLRHMV DK
Sbjct: 1072 PTYYQRLRHMVDDKIH 1087
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 250 bits (640), Expect = 6e-70
Identities = 152/987 (15%), Positives = 291/987 (29%), Gaps = 192/987 (19%)
Query: 52 KNFGKPPDKQNEFLLTLGAPHIASFDFML----------DEGLDLAVEDIAPIE-FEIYG 100
K FG+ + L L + S+ L + G+ A + PIE +
Sbjct: 4 KRFGRIREVIP--LPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGK 61
Query: 101 KTLKLNIVKAAISEPKVPAGPVGIHFNKYYPTEARQTRSVYSGPFNVTVAWSWDGKAGGT 160
L L+ ++ + EP + E R+ Y P + G
Sbjct: 62 GGLVLDFLEYRLGEPP------------FPQDECREKDLTYQAPLYARLQLIHKDT-GLI 108
Query: 161 FTKEV--GRVPIMLKSKRCHLRNLTPAQLIERGEHPDEWGGYFIVGGHEKLVRLLINNRR 218
EV G +P+M + G FI+ G ++++ I R
Sbjct: 109 KEDEVFLGHIPLMTED------------------------GSFIINGADRVIVSQI--HR 142
Query: 219 NHPIAIKRNAWKNRGLLFS-----------------DLGVYIRSVKRDESAT-------- 253
+ + + + + S + V ++ KR
Sbjct: 143 SPGVYFTPDPARPGRYIASIIPLPKRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGY 202
Query: 254 ---------NNVLHFVTNGSARFMFSHRKSMCLLGMMQSLHEEGIHTQHDSKVFFGQIFK 304
V +F+ R L+ + L + + + +
Sbjct: 203 DQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIA 262
Query: 305 EKLQYDLRHLNEVEICDYM---LTNCILPHLDD--YWDKFLCLSHMTCKLFHVVQGMVQL 359
+ +YDL + + + L+ L +D + D+ + ++
Sbjct: 263 DPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEV 322
Query: 360 DSEDSIMLQEIMTGGSLYLQLLKKEKSGTSAVLKESDIYAAFRASSIESAMTNFLATGNV 419
D D + + I T G L + + + ++E + + + + + + +
Sbjct: 323 DDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSR----PL 378
Query: 420 SAGKNSTLQLMQASGFVIMAENINRMRYMSHFRAVHRGSYFQEMRSSEPRQLRTDAWGFI 479
A Q S F ++ +R+ A+ G +E + R + +G I
Sbjct: 379 EAAIREFFSRSQLSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRI 438
Query: 480 CPVHTPDGTPCGLLNHLTTNCQISEYIPSKVLAQIPSVLVSLGMLPLTPVIQSIPEQALM 539
CPV TP+G GL+ L ++ E + P V G++ V + E+
Sbjct: 439 CPVETPEGANIGLITSLAAYARVDELGFI----RTPYRRVVGGVVTDEVVYMTATEEDRY 494
Query: 540 VMLDGRIVGYILDQIATSLVPKLRMLKIVGEKIPKSLEIVYLKRPEKGMGLYPGLYLFTG 599
+ L+ + + K + P++ + L F
Sbjct: 495 TI---AQANTPLEGNRIAAERVVARRKGEPVIVSPEEVEFMDVSPKQVFSVNTNLIPFLE 551
Query: 600 PGRMLRPVM--NLAAGNIEWIGTFEQVFMDICITMKEAYPGIT---------THRELSKT 648
R +M N+ + I V M + ++
Sbjct: 552 HDDANRALMGSNMQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRI 611
Query: 649 DFLSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRP 708
L+ P N Q +G PAS
Sbjct: 612 VVRYEDGRLVEYPLRRFYRSNQGTALD--QRPRVVVGQRVRKG---DLLADGPAS----- 661
Query: 709 VHYDTLDMDNFPMGTNAIVAVISYTGYDMEDAMILNKSSYERGFAHGCIFKSMFIELESG 768
+ +G N +VA++ + GY+ EDA+++++ +R F + IE
Sbjct: 662 ------ENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEAR-- 713
Query: 769 YNYYGTETMYSGVDGSMMQAQIFFGVVHYQRLRHMVSDKWQTKDYFGRDPANKALEDKLG 828
D + +I + H ++A L
Sbjct: 714 -------------DTKLGPERITRDIPHL----------------------SEAALRDLD 738
Query: 829 PDGLVYVGAKLNERDPMYSYW---------------------KESENRYVTCRYSGKEE- 866
+G+V +GA++ D + K + + + R E
Sbjct: 739 EEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGG 798
Query: 867 --MCVEVVRMSSGFTEGGSVTPNCAYIGYRIQRNPTVGDKFASRAGQKGICSVKWPAEDL 924
+ +R E + +R VGDK A+R G KG+ + P ED+
Sbjct: 799 IVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDM 858
Query: 925 PFTDSGLVPDIVFNPHGFPSRMTIGFL 951
P G D++ NP G PSRM +G +
Sbjct: 859 PHLPDGTPVDVILNPLGVPSRMNLGQI 885
Score = 63.6 bits (154), Expect = 1e-10
Identities = 22/135 (16%), Positives = 38/135 (28%), Gaps = 8/135 (5%)
Query: 675 MGKQTMGTPCLNWRYQGVGKLYRLQTPASPFFRPVHYDTLDMDNFPMGTNAIVAVISYTG 734
M + L +G+ Y + F + ++ G
Sbjct: 880 MNLGQILETHLGLAGYFLGQRYI----SPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFG 935
Query: 735 YDMEDAMILNKSSYERGFAHGCIFKSMFIELESGYNYYGTETMYSGVDGSMMQAQIFFGV 794
D + +L ++ G E G +Y G G ++ I G
Sbjct: 936 VDKREVEVLRRAEKLGLVTPG----KTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQ 991
Query: 795 VHYQRLRHMVSDKWQ 809
+ +L HMV DK
Sbjct: 992 MFIMKLYHMVEDKMH 1006
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 158
Score = 29.6 bits (66), Expect = 0.95
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 814 FGRDPANKALEDKLGPDGLVYVGAKLNERDPMYSYWKE 851
F DP K + + D ++ +G+ M + K
Sbjct: 78 FLLDPDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKN 115
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 27.1 bits (60), Expect = 4.0
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 416 TGNVSAGKNSTLQLMQA--SGFVIMAENINRMRYMSHFRAVHR 456
TG V G N T + ++ + V +AE++ + H +
Sbjct: 26 TGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELAD 68
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 27.1 bits (60), Expect = 5.1
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 416 TGNVSAGKNSTLQLMQA--SGFVIMAENINRMRYMSHFRAVHR 456
TG + G N T + ++ + V++AE+++ + H +
Sbjct: 26 TGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCD 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,652,545
Number of extensions: 177462
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 11
Length of query: 951
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 857
Effective length of database: 1,116,976
Effective search space: 957248432
Effective search space used: 957248432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)