BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8411
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/318 (64%), Positives = 235/318 (73%), Gaps = 31/318 (9%)
Query: 10 NAWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDK 69
+AW WV S+H +FGKFVLS+GKFY D EKDKG+QTSQDARFYALS KF PFSNK +
Sbjct: 17 DAWTNRWVESKHKS-DFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQ 75
Query: 70 DLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFN 129
LV+QFTVKHEQNIDCGGGYVK+F L+Q +MHG+S Y IMFGPDICGPGTKKVHVIFN
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFN 135
Query: 130 YKGKNLLINKDIRCKDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWDFLPPKKIK 189
YKGKN+LINKDIR KDD FTHLYTLIV+PDNTY+V IDN V++G+LEDDWDFLPPKKIK
Sbjct: 136 YKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIK 195
Query: 190 DPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNP 249
DP+A KPEDWD+R I DP D+KPEDW+K GEW+ IDN
Sbjct: 196 DPDAAKPEDWDERAKIDDPTDSKPEDWDKGGS----------------GGEWKPRQIDN- 238
Query: 250 EYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDN 309
PDYKG W+HPEIDNPEYSPD +Y +G DLWQVKSGTIFDN
Sbjct: 239 -------------PDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDN 285
Query: 310 VLITDDIATAKKYAEDIW 327
LIT+D A A+++ + W
Sbjct: 286 FLITNDEAYAEEFGNETW 303
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/177 (76%), Positives = 153/177 (86%), Gaps = 1/177 (0%)
Query: 10 NAWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDK 69
+AW WV S+H +FGKFVLS+GKFY D EKDKG+QTSQDARFYALS KF PFSNK +
Sbjct: 17 DAWTNRWVESKHK-SDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQ 75
Query: 70 DLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFN 129
LV+QFTVKHEQNIDCGGGYVK+F L+Q +MHG+S Y IMFGPDICGPGTKKVHVIFN
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFN 135
Query: 130 YKGKNLLINKDIRCKDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWDFLPPK 186
YKGKN+LINKDIR KDD FTHLYTLIV+PDNTY+V IDN V++G+LEDDWDFLPPK
Sbjct: 136 YKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 192
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 280 SPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAKKYAEDIW 327
PD +Y +G DLWQVKSGTIFDN LIT+D A A+++ + W
Sbjct: 197 GPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|B Chain B, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|C Chain C, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POW|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
Length = 265
Score = 284 bits (727), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 134/175 (76%), Positives = 152/175 (86%), Gaps = 1/175 (0%)
Query: 10 NAWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDK 69
+ W W+ S+H +FGKFVLS+GKFY D EKDKG+QTSQDARFYALS F PFSNK +
Sbjct: 22 DGWTSRWIESKHK-SDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQ 80
Query: 70 DLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFN 129
LV+QFTVKHEQNIDCGGGYVK+F SL+QT+MHG+S Y IMFGPDICGPGTKKVHVIFN
Sbjct: 81 TLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFN 140
Query: 130 YKGKNLLINKDIRCKDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWDFLP 184
YKGKN+LINKDIRCKDD FTHLYTLIV+PDNTY+V IDN V++G+LEDDWDFLP
Sbjct: 141 YKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLP 195
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 280 SPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAKKYAEDIW 327
S DP +Y +G DLWQVKSGTIFDN LIT+D A A+++ + W
Sbjct: 197 SGDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 134/177 (75%), Positives = 151/177 (85%), Gaps = 1/177 (0%)
Query: 10 NAWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDK 69
+AW WV S+H +FGKFVLS+GKFY D EKDKG+QTSQDARFYALS KF PFSNK +
Sbjct: 17 DAWTNRWVESKHK-SDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQ 75
Query: 70 DLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFN 129
LV+QFTVKHEQNIDCGGGYVK+F L+Q + HG+S Y I FGPDICGPGTKKVHVIFN
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDXHGDSEYNIXFGPDICGPGTKKVHVIFN 135
Query: 130 YKGKNLLINKDIRCKDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWDFLPPK 186
YKGKN+LINKDIR KDD FTHLYTLIV+PDNTY+V IDN V++G+LEDDWDFLPPK
Sbjct: 136 YKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 192
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 280 SPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAKKYAEDIW 327
PD +Y +G DLWQVKSGTIFDN LIT+D A A+++ + W
Sbjct: 197 GPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 181/340 (53%), Gaps = 56/340 (16%)
Query: 43 DKGIQTSQDARFYALSKKFT-PFSNKDKDLVIQFTVKHEQNIDCGGGYVKVFDCS--LEQ 99
DKG+ A+ +A+S K PF K L++Q+ V + I+CGG YVK+ + L
Sbjct: 74 DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNL 133
Query: 100 TNMHGESPYLIMFGPDICGPGTKKVHVIFNYKGKNLLINKDIRCK----------DDVFT 149
H ++PY IMFGPD CG K+H IF +K + ++ K D T
Sbjct: 134 DQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKT 192
Query: 150 HLYTLIVKPDNTYDVLIDNESVQNGNLEDDWD--FLPPKKIKDPEAKKPEDWDDRPTIAD 207
HLYTLI+ PDN++++L+D V +GNL +D P ++I+DPE +KPEDWD+RP I D
Sbjct: 193 HLYTLILNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPD 252
Query: 208 PNDTKPEDW---------------------EKPEHIPNPDAVKPADWDDEMDGEWEAP-- 244
P+ KP+DW ++PE++P+PDA KP DWD++MDGEWEAP
Sbjct: 253 PDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQI 312
Query: 245 -----------------MIDNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYY 287
MIDNP YKG W P I+NP+Y+G+W +I NP++ D E +
Sbjct: 313 ANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFK 372
Query: 288 KPEICTIGFDLWQVKSGTIFDNVLITDDIATAKKYAEDIW 327
IG +LW + S FDN ++ D +A D W
Sbjct: 373 MTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGW 412
>pdb|1HHN|A Chain A, Calreticulin P-Domain
Length = 101
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/97 (77%), Positives = 85/97 (87%)
Query: 186 KKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPM 245
KKIKDP+A KPEDWD+R I DP D+KPEDW+KPEHIP+PDA KP DWD+EMDGEWE P+
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPV 61
Query: 246 IDNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPD 282
I NPEYKG W P+QI+NPDYKG W+HPEIDNPEYSPD
Sbjct: 62 IQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPD 98
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 189-261)
Length = 74
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 62/73 (84%)
Query: 186 KKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPM 245
KKIKDP+A KPEDWD+R I DP D+KPEDW+KPEHIP+PDA KP DWD+EMDGEWE P+
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPV 61
Query: 246 IDNPEYKGVWAPK 258
I NPEYKG W P+
Sbjct: 62 IQNPEYKGEWKPR 74
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 221-256)
Length = 37
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/36 (80%), Positives = 32/36 (88%)
Query: 218 KPEHIPNPDAVKPADWDDEMDGEWEAPMIDNPEYKG 253
KPEHIP+PDA KP DWD+EMDGEWE P+I NPEYKG
Sbjct: 2 KPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKG 37
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 38
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 217 EKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNP 249
++P+ IP+P+A KP DW+++MDGEWEAP I NP
Sbjct: 5 DEPKFIPDPNAEKPDDWNEDMDGEWEAPRISNP 37
>pdb|1BA7|A Chain A, Soybean Trypsin Inhibitor
pdb|1BA7|B Chain B, Soybean Trypsin Inhibitor
pdb|1AVU|A Chain A, Trypsin Inhibitor From Soybean (Sti)
Length = 181
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 213 PEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNPE---YKGVWAPKQIEN 262
P +W E +P AVK + D MDG + + + E YK V+ P+Q E+
Sbjct: 90 PTEWSVVEDLPEGPAVKIGENKDAMDGWFRLERVSDDEFNNYKLVFCPQQAED 142
>pdb|1AVW|B Chain B, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|B Chain B, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
Length = 177
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 213 PEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNPE---YKGVWAPKQIEN 262
P +W E +P AVK + D MDG + + + E YK V+ P+Q E+
Sbjct: 90 PTEWSVVEDLPEGPAVKIGENKDAMDGWFRLERVSDDEFNNYKLVFCPQQAED 142
>pdb|3CMN|A Chain A, Crystal Structure Of A Putative Hydrolase With A Novel
Fold From Chloroflexus Aurantiacus
Length = 372
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 188 IKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVK-PADWDDEMDGE 240
+K + ++ E + + A WE+PE++P+ D ++ P W MD E
Sbjct: 312 LKLAQYQQGEAFVNAVVAARGIQFASRVWERPENLPSMDEIRNPGQWIVRMDRE 365
>pdb|3ZYP|A Chain A, Cellulose Induced Protein, Cip1
Length = 218
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 267 GVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAKK 321
G+ V P +DNP + Y PEI + F W+ SG + N + DDI+ A
Sbjct: 162 GMTVGPGVDNPNDAGWTRASYIPEITGVNFG-WEAYSGDV--NTVWFDDISIAST 213
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 296 FDLWQVKSGTIFDNVLITDDIATAKKYAEDI 326
F LW+ +G++F + + TA KY DI
Sbjct: 891 FGLWETTNGSVFLTAFVGTSMQTAVKYISDI 921
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 296 FDLWQVKSGTIFDNVLITDDIATAKKYAEDI 326
F LW+ +G++F + + TA KY DI
Sbjct: 891 FGLWETTNGSVFLTAFVGTSMQTAVKYISDI 921
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 219 PEHIPNPDAVKPADW 233
PEH P PDA+ PA W
Sbjct: 125 PEHTPEPDAICPAHW 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,142,145
Number of Sequences: 62578
Number of extensions: 638512
Number of successful extensions: 1030
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 42
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)