Query psy8411
Match_columns 385
No_of_seqs 200 out of 768
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 18:06:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0674|consensus 100.0 6E-132 1E-136 962.2 26.6 356 3-359 22-379 (406)
2 PF00262 Calreticulin: Calreti 100.0 6E-123 1E-127 922.8 14.8 309 3-312 2-367 (367)
3 KOG0675|consensus 100.0 1E-110 3E-115 850.4 22.8 331 4-337 43-439 (558)
4 KOG0674|consensus 99.9 1.6E-24 3.4E-29 212.3 9.9 121 173-318 213-345 (406)
5 PF00262 Calreticulin: Calreti 99.9 3.9E-24 8.4E-29 214.5 0.5 95 174-268 226-337 (367)
6 KOG0675|consensus 99.8 1.5E-21 3.3E-26 200.3 8.2 106 174-280 272-395 (558)
7 PF06439 DUF1080: Domain of Un 58.5 80 0.0017 27.7 8.9 141 8-174 6-153 (185)
8 PF07210 DUF1416: Protein of u 51.9 18 0.00039 30.4 3.4 29 67-96 4-32 (85)
9 PF10262 Rdx: Rdx family; Int 30.4 45 0.00097 26.4 2.4 22 152-173 35-56 (76)
10 PF10106 DUF2345: Uncharacteri 26.9 50 0.0011 29.9 2.4 26 68-95 106-131 (155)
11 PF02747 PCNA_C: Proliferating 25.7 68 0.0015 27.7 2.9 21 67-94 105-125 (128)
12 PF07691 PA14: PA14 domain; I 24.1 58 0.0013 27.4 2.2 26 149-174 59-84 (145)
13 PF02973 Sialidase: Sialidase, 23.6 2.3E+02 0.0049 27.0 6.2 105 53-174 18-131 (190)
14 COG4253 Uncharacterized protei 21.8 46 0.001 33.5 1.3 20 77-96 165-184 (278)
15 PF11025 GP40: Glycoprotein GP 20.2 2.5E+02 0.0055 25.9 5.5 71 82-173 5-75 (165)
No 1
>KOG0674|consensus
Probab=100.00 E-value=6.4e-132 Score=962.22 Aligned_cols=356 Identities=70% Similarity=1.243 Sum_probs=342.0
Q ss_pred cccccc--cccccCCeeecCCCCCccceEEEecccccCCcccCcceeeCccccceeeeccCccccCCCCCeEEEEEEeec
Q psy8411 3 LLTKGY--QNAWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDKDLVIQFTVKHE 80 (385)
Q Consensus 3 ~~~e~f--~~~w~~rWv~S~~~~~~~G~w~~~~g~~~~~~~~d~GL~~~~~a~~yaIs~~l~p~~~~~k~LVvQYeVk~q 80 (385)
||.|.| +++|+.|||+|+|++...|.|.+++|+||++.+.|+||+|++++||||||++|+||+|++|+|||||+|||+
T Consensus 22 yf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~FsnK~kTLv~q~tVkhe 101 (406)
T KOG0674|consen 22 YFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKPFSNKGKTLVIQFTVKHE 101 (406)
T ss_pred hhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeeeecccccccccCceEEEEEEeccc
Confidence 789999 578999999999995589999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCceEEeecCCCCCCCccCCCCceEEecCCCcCCCCceEEEEEeeCCccccccCCCCCCCCCcccceeeeeCCCC
Q psy8411 81 QNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNYKGKNLLINKDIRCKDDVFTHLYTLIVKPDN 160 (385)
Q Consensus 81 ~~l~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k~~~~~~~~~~~~~~d~~tHlYTLii~pdn 160 (385)
|.|+|||||||||+.++|+.+|+++|||.||||||+||++|+|||+||+|+|+||++++.|+|++|.+|||||||||||+
T Consensus 102 Q~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhlikK~i~Ck~D~~tHlYTlIlRPd~ 181 (406)
T KOG0674|consen 102 QKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLIKKDIRCKDDELTHLYTLILRPDA 181 (406)
T ss_pred ccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchhccccccccCCcceeEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECCeeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8411 161 TYDVLIDNESVQNGNLEDDWDFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGE 240 (385)
Q Consensus 161 tyeI~ID~~~~~~G~l~~dwd~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWde~~~I~dP~a~kP~dWd~~~dG~ 240 (385)
||+|+|||+.+.+|||.+||+++||++|.||.++||+||+++++|+||+++||++|+.|++||||+|+||+|||++|||+
T Consensus 182 TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGE 261 (406)
T KOG0674|consen 182 TYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGE 261 (406)
T ss_pred eeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccccccccCCcccCCcccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCcccccCCcccCCCCCccccCCccCCCCCCCCccccCCCCcceeeeeeeeeccCceeeeeeeccCHHHHH
Q psy8411 241 WEAPMIDNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAK 320 (385)
Q Consensus 241 W~~p~I~NP~ykG~W~p~~I~NP~Y~g~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~ifDNili~dd~~~A~ 320 (385)
|+||||+||.|+|+|+|++|.||+|+|.|.+|+|+||.|..++.+|.+.+|++|||+||||+||+||||||||+|+++|+
T Consensus 262 We~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~eyA~ 341 (406)
T KOG0674|consen 262 WEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEYAE 341 (406)
T ss_pred cCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEeecceeecceEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCchhHHhhhhhhHHHHHHHHHHHhhcCCCC
Q psy8411 321 KYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKD 359 (385)
Q Consensus 321 ~~~~~t~~~~~~~E~~~~~~~~~~e~~~~~~e~~~~~~~ 359 (385)
+++++||+..+..|++|+....+..+ +++++.+++.++
T Consensus 342 k~~~eTwg~~k~~ek~~~~~~~k~qr-k~eee~kka~~e 379 (406)
T KOG0674|consen 342 KFANETWGKTKDAEKEMKDKADKEQR-KEEEEAKKASAE 379 (406)
T ss_pred HHHHhhhcccccHHHHhhhhhhhhcc-hhHHhhhcCchh
Confidence 99999999999999999887776655 344444443333
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=6.4e-123 Score=922.85 Aligned_cols=309 Identities=55% Similarity=1.037 Sum_probs=238.2
Q ss_pred ccccccccc--ccCCeeecCCCC-----CccceEEEecccccCCcccCcceeeCccccceeeeccC-ccccCCCCCeEEE
Q psy8411 3 LLTKGYQNA--WEKEWVYSQHPG-----KEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKF-TPFSNKDKDLVIQ 74 (385)
Q Consensus 3 ~~~e~f~~~--w~~rWv~S~~~~-----~~~G~w~~~~g~~~~~~~~d~GL~~~~~a~~yaIs~~l-~p~~~~~k~LVvQ 74 (385)
+|.|+|+++ |.+|||+|++++ .|.|+|++++|++|++..+|+||||+++|||||||++| +||++++++||||
T Consensus 2 ~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVvQ 81 (367)
T PF00262_consen 2 YFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVVQ 81 (367)
T ss_dssp EEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEEE
T ss_pred eEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEEE
Confidence 699999875 999999998773 35899999999999999999999999999999999999 9999999999999
Q ss_pred EEEeeccceecCCceEEeecCCCCCC-CccCCCCceEEecCCCcCCCCceEEEEEeeCCc-------cccccCCCCCCCC
Q psy8411 75 FTVKHEQNIDCGGGYVKVFDCSLEQT-NMHGESPYLIMFGPDICGPGTKKVHVIFNYKGK-------NLLINKDIRCKDD 146 (385)
Q Consensus 75 YeVk~q~~l~CGGaYiKLl~~~~d~~-~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k~~-------~~~~~~~~~~~~d 146 (385)
||||||++|+|||||||||++++++. +|+++|||+||||||+||+ +++|||||||+|+ +|+.++++++.+|
T Consensus 82 YeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG~-~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~D 160 (367)
T PF00262_consen 82 YEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCGS-SNKVHFIFRHKNPITGEIEEKHLKKPPISCFTD 160 (367)
T ss_dssp EEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEEST-TEEEEEEEEEE-TTTEETTEEEE-SSSSB-HHS
T ss_pred EEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCCC-CceEEEEEEecCCCCCcccceecccCCcccccC
Confidence 99999999999999999999988887 9999999999999999998 6779999999887 5777888888999
Q ss_pred CcccceeeeeCCCCceEEEECCeeecCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC-------
Q psy8411 147 VFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWD--FLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWE------- 217 (385)
Q Consensus 147 ~~tHlYTLii~pdntyeI~ID~~~~~~G~l~~dwd--~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWd------- 217 (385)
++||||||||+|||||+|+|||+++.+|||++||+ ++||++|+||+|+||+||||+++|+||+|+||+|||
T Consensus 161 ~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~I 240 (367)
T PF00262_consen 161 KLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEFI 240 (367)
T ss_dssp SSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SEE
T ss_pred CCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCcccc
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999998
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCccCCccCCC------------------CCcccccCCcccCCCC
Q psy8411 218 --------------KPEHIPNPDAVKPADWDDEMDGEWEAPMIDNP------------------EYKGVWAPKQIENPDY 265 (385)
Q Consensus 218 --------------e~~~I~dP~a~kP~dWd~~~dG~W~~p~I~NP------------------~ykG~W~p~~I~NP~Y 265 (385)
+|++|+||+|+||+|||++++|+|+||||+|| +|||+|+||||+||+|
T Consensus 241 ~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~Y 320 (367)
T PF00262_consen 241 PDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPNY 320 (367)
T ss_dssp E-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT-
T ss_pred cCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCccc
Confidence 58999999999999999999999999999999 9999999999999999
Q ss_pred CccccCCccCCCCCCCCccccCCCCcceeeeeeeeeccCceeeeeee
Q psy8411 266 KGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLI 312 (385)
Q Consensus 266 ~g~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~ifDNili 312 (385)
+|+|.||+|+||+|+++.+++.+.+|++||||||||++|++||||||
T Consensus 321 kG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 321 KGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp --S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred cccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 99999999999999999999999999999999999999999999998
No 3
>KOG0675|consensus
Probab=100.00 E-value=1.2e-110 Score=850.41 Aligned_cols=331 Identities=41% Similarity=0.803 Sum_probs=303.8
Q ss_pred ccccccc--cccCCeeecCCCC--------CccceEEEecccccCCcccCcceeeCccccceeeeccC-ccccCCCCCeE
Q psy8411 4 LTKGYQN--AWEKEWVYSQHPG--------KEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKF-TPFSNKDKDLV 72 (385)
Q Consensus 4 ~~e~f~~--~w~~rWv~S~~~~--------~~~G~w~~~~g~~~~~~~~d~GL~~~~~a~~yaIs~~l-~p~~~~~k~LV 72 (385)
|+++|+. .|. |||.|.+++ +|.|+|.++++.. ....+|+||++++.|||||||+.| +||++..++||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~-~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plV 120 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPK-SHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLV 120 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCcc-ccCCcccceEeeccchhhHHHhhhcCCcccCCCCeE
Confidence 6788876 355 899998752 5789999999985 566899999999999999999999 99999999999
Q ss_pred EEEEEeeccceecCCceEEeecC---CCCCCCccCCCCceEEecCCCcCCCCceEEEEEeeCCcc------ccccCCCC-
Q psy8411 73 IQFTVKHEQNIDCGGGYVKVFDC---SLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNYKGKN------LLINKDIR- 142 (385)
Q Consensus 73 vQYeVk~q~~l~CGGaYiKLl~~---~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k~~~------~~~~~~~~- 142 (385)
||||||+|+|++|||||||||+. ..++++|+++|||+||||||+||. +++|||||||+||. |+.+.++.
T Consensus 121 VQYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG~-~~kvhFIf~hknp~tG~~~ekh~~~pp~~ 199 (558)
T KOG0675|consen 121 VQYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCGE-TNKVHFIFRHKNPITGEISEKHLKAPPSS 199 (558)
T ss_pred EEEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccCC-cccEEEEEeeccCCCCeeehhhccCCCcc
Confidence 99999999999999999999996 467899999999999999999996 99999999999982 34444544
Q ss_pred ---CCCCCcccceeeeeCCCCceEEEECCeeecCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q psy8411 143 ---CKDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWD--FLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWE 217 (385)
Q Consensus 143 ---~~~d~~tHlYTLii~pdntyeI~ID~~~~~~G~l~~dwd--~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWd 217 (385)
..+|++||||||||+|||||+|||||++|+.|||+.||. ++||++|+||++.||+|||+|+.||||+|+||+|||
T Consensus 200 l~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWD 279 (558)
T KOG0675|consen 200 LKKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWD 279 (558)
T ss_pred cccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccC
Confidence 568999999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred C---------------------CCCCCCCCCCCCCCCCCCCCCCc-------------------cCCccCCCCCcccccC
Q psy8411 218 K---------------------PEHIPNPDAVKPADWDDEMDGEW-------------------EAPMIDNPEYKGVWAP 257 (385)
Q Consensus 218 e---------------------~~~I~dP~a~kP~dWd~~~dG~W-------------------~~p~I~NP~ykG~W~p 257 (385)
+ |++|+||+|+||+|||++++|+| +||||.||+|||+|.+
T Consensus 280 E~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~ 359 (558)
T KOG0675|consen 280 EDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWIL 359 (558)
T ss_pred cCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCcc
Confidence 3 67999999999999999887665 4567789999999999
Q ss_pred CcccCCCCCccccCCccCCCCCCCCccccCCCCcceeeeeeeeeccCceeeeeeeccCHHHHHHHHHhhcccCchhHHhh
Q psy8411 258 KQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAKKYAEDIWKPAFEGEKKM 337 (385)
Q Consensus 258 ~~I~NP~Y~g~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~ifDNili~dd~~~A~~~~~~t~~~~~~~E~~~ 337 (385)
+||.||+|+|.|+||+|+||+||++.+++.+.+|.+||||||+|+++++|||||||++++.|+.+++.||..|..++++.
T Consensus 360 pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 360 PMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred ccccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996665553
No 4
>KOG0674|consensus
Probab=99.91 E-value=1.6e-24 Score=212.34 Aligned_cols=121 Identities=39% Similarity=0.784 Sum_probs=102.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCccCCc
Q psy8411 173 NGNLEDDWDFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEK-------PEHIPNPDAVKPADWDDEMDGEWEAPM 245 (385)
Q Consensus 173 ~G~l~~dwd~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWde-------~~~I~dP~a~kP~dWd~~~dG~W~~p~ 245 (385)
+.+.++||+.. ..|+||+|+||+||+-+++||||+|+||+|||+ ++||+|| ++.|+|+|..
T Consensus 213 ~a~KPedWDer--~~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGEWe~P~i~nP----------ey~gewkPkq 280 (406)
T KOG0674|consen 213 DAKKPEDWDER--EYIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNP----------EYKGEWKPKQ 280 (406)
T ss_pred cccCcccchhh--ccCCCccccCccccccccccCCcccCCcccccccccCCcCCCCCCCc----------cccCccCccc
Confidence 46899999984 699999999999999999999999999999994 8999999 8999999999
Q ss_pred cCCCCCcccccCCcccCCCCCccccCCccCCC-CCCCCccccCCCCccee----eeeeeeeccCceeeeeeeccCHHH
Q psy8411 246 IDNPEYKGVWAPKQIENPDYKGVWVHPEIDNP-EYSPDPELYYKPEICTI----GFDLWQVKSGTIFDNVLITDDIAT 318 (385)
Q Consensus 246 I~NP~ykG~W~p~~I~NP~Y~g~W~p~~I~NP-~y~~d~~~~~~~~i~~v----G~elW~~~~g~ifDNili~dd~~~ 318 (385)
|.||+|||.|.+|+|.||.|. +.| .|......+....+++| .|+.. +|.|..-.+...+.
T Consensus 281 i~np~yKg~w~hp~i~npey~--------~d~~ly~~~ni~~lgldLWQVKSgtIFDN~-----LitdD~eyA~k~~~ 345 (406)
T KOG0674|consen 281 IKNPAYKGKWIHPEIDNPEYP--------DDPELYHYENIGVLGLDLWQVKSGTIFDNF-----LITDDEEYAEKFAN 345 (406)
T ss_pred ccCccccceeeccccCCCcCC--------CCcceeeecccceeeeeEEEeecceeecce-----EecCCHHHHHHHHH
Confidence 999999999999999999998 455 45544434444677777 78888 77787777776653
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.88 E-value=3.9e-24 Score=214.47 Aligned_cols=95 Identities=45% Similarity=0.987 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCcCCCCCCCCCCCCC-------CCCCCCCCCCCC--CCC------CCC
Q psy8411 174 GNLEDDWDFLPPKKIKDPEAKKPEDWDD--RPTIADPNDTKPEDWEK-------PEHIPNPDAVKP--ADW------DDE 236 (385)
Q Consensus 174 G~l~~dwd~~~p~~I~DP~d~KP~DWdd--~~~I~DP~a~KP~dWde-------~~~I~dP~a~kP--~dW------d~~ 236 (385)
...++||+...|.+|+||+++||++|++ +++||||+|+||+|||+ +++|+||.|..+ -.| |..
T Consensus 226 ~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~ 305 (367)
T PF00262_consen 226 AKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPN 305 (367)
T ss_dssp TT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT
T ss_pred ccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCcc
Confidence 3556666666666666666666666654 68999999999999994 889999988873 235 679
Q ss_pred CCCCccCCccCCCCCcccccCCcccCCCCCcc
Q psy8411 237 MDGEWEAPMIDNPEYKGVWAPKQIENPDYKGV 268 (385)
Q Consensus 237 ~dG~W~~p~I~NP~ykG~W~p~~I~NP~Y~g~ 268 (385)
|+|+|+||||+||+|||+|+||+|+||+|...
T Consensus 306 YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d 337 (367)
T PF00262_consen 306 YKGKWKPPMIPNPNYKGEWKPRKIPNPDYFED 337 (367)
T ss_dssp --SS----EEE-TT---S----EEE-TT--SS
T ss_pred ccCCccccccCCccccccccccccCCCcccCC
Confidence 99999999999999999999999999999975
No 6
>KOG0675|consensus
Probab=99.85 E-value=1.5e-21 Score=200.27 Aligned_cols=106 Identities=40% Similarity=0.722 Sum_probs=91.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCcCCCCCCCCCCCCC-------CCCCCCCCCCC---------CCCCCC
Q psy8411 174 GNLEDDWDFLPPKKIKDPEAKKPEDWDD--RPTIADPNDTKPEDWEK-------PEHIPNPDAVK---------PADWDD 235 (385)
Q Consensus 174 G~l~~dwd~~~p~~I~DP~d~KP~DWdd--~~~I~DP~a~KP~dWde-------~~~I~dP~a~k---------P~dWd~ 235 (385)
...++|||...|.+|+|+++.||++|.+ +++|+||+|+||+|||+ +++|.||.|.+ |-.=|.
T Consensus 272 AvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP 351 (558)
T KOG0675|consen 272 AVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNP 351 (558)
T ss_pred cCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCC
Confidence 4678999999999999999999999965 57999999999999994 88999999974 334478
Q ss_pred CCCCCccCCccCCCCCcccccCCcccCCCCCccccCCccCCCCCC
Q psy8411 236 EMDGEWEAPMIDNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYS 280 (385)
Q Consensus 236 ~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Y~g~W~p~~I~NP~y~ 280 (385)
.|+|.|.+|||.||+|+|+|+||.|+||+|+..=+|- .-+|.|.
T Consensus 352 ~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~-~~~pIsa 395 (558)
T KOG0675|consen 352 NYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPF-TLTPISA 395 (558)
T ss_pred ccCCCCccccccCccccCccccccCCCcccccccCcc-cccchhh
Confidence 9999999999999999999999999999999876554 3455543
No 7
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=58.49 E-value=80 Score=27.74 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=62.0
Q ss_pred ccccccCCeeecCCCCCccceEEEecccccCCcccCcceeeCccccceeeeccCccccCCCCCeEEEEEEeeccceecCC
Q psy8411 8 YQNAWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDKDLVIQFTVKHEQNIDCGG 87 (385)
Q Consensus 8 f~~~w~~rWv~S~~~~~~~G~w~~~~g~~~~~~~~d~GL~~~~~a~~yaIs~~l~p~~~~~k~LVvQYeVk~q~~l~CGG 87 (385)
|+..-.+.|...... ...|.|.++.|.+. +........-+.++. +.| ++++|+.++|+.. .|.
T Consensus 6 f~g~~l~gW~~~~~~-~~~~~~~v~dG~l~-------~~~~~~~~~~~l~~~--~~~----~df~l~~d~k~~~---~~~ 68 (185)
T PF06439_consen 6 FNGKDLDGWKIYGGG-WFEGGWSVKDGVLV-------SNGSSGSGGGYLYTD--KKF----SDFELEVDFKITP---GGN 68 (185)
T ss_dssp S-SSCGTTEEETTSS-SETTTEEEETTEEE--------GGGGESSS--EEES--SEB----SSEEEEEEEEE-T---T-E
T ss_pred ECCCCHHHCeeCCCC-ccccCcEeeCCEEE-------ecccCCCCcceEEEC--Ccc----ccEEEEEEEEECC---CCC
Confidence 554445778777644 33567877666443 000111111122222 223 4588999999832 223
Q ss_pred ceEEeecCCCCCCCccCCCCceEEecCCCcCCCCceEEEEEee-CCccc-----cccCCC-CCCCCCcccceeeeeCCCC
Q psy8411 88 GYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNY-KGKNL-----LINKDI-RCKDDVFTHLYTLIVKPDN 160 (385)
Q Consensus 88 aYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~-k~~~~-----~~~~~~-~~~~d~~tHlYTLii~pdn 160 (385)
+=|-|..... ........-|.+-..+..++. .+.+ .+... ...... .......-|=|+++++ .+
T Consensus 69 sGi~~r~~~~-~~~~~~~~gy~~~i~~~~~~~-------~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I~~~-g~ 139 (185)
T PF06439_consen 69 SGIFFRAQSP-GDGQDWNNGYEFQIDNSGGGT-------GLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRIVVK-GN 139 (185)
T ss_dssp EEEEEEESSE-CCSSGGGTSEEEEEE-TTTCS-------TTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEEEEE-TT
T ss_pred eEEEEEeccc-cCCCCcceEEEEEEECCCCcc-------CCCCccceEEEeccccccccccccCCCCceEEEEEEEE-CC
Confidence 3333333210 111122233777777776650 0000 11111 001111 1122233444555555 77
Q ss_pred ceEEEECCeeecCC
Q psy8411 161 TYDVLIDNESVQNG 174 (385)
Q Consensus 161 tyeI~ID~~~~~~G 174 (385)
++.|.|||..|..-
T Consensus 140 ~i~v~vnG~~v~~~ 153 (185)
T PF06439_consen 140 RITVWVNGKPVADF 153 (185)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEECCEEEEEE
Confidence 89999999987543
No 8
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=51.89 E-value=18 Score=30.36 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=24.9
Q ss_pred CCCCeEEEEEEeeccceecCCceEEeecCC
Q psy8411 67 KDKDLVIQFTVKHEQNIDCGGGYVKVFDCS 96 (385)
Q Consensus 67 ~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~ 96 (385)
-.|..|||=.|. ..+--.||||+.||.++
T Consensus 4 ~~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 4 VEKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred ccceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 357899999999 77888899999999863
No 9
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=30.39 E-value=45 Score=26.39 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=16.9
Q ss_pred eeeeeCCCCceEEEECCeeecC
Q psy8411 152 YTLIVKPDNTYDVLIDNESVQN 173 (385)
Q Consensus 152 YTLii~pdntyeI~ID~~~~~~ 173 (385)
.+|+....+.|||.+||+.|.+
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~S 56 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFS 56 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEE
T ss_pred EEEEeccCCEEEEEEccEEEEE
Confidence 3556667999999999998875
No 10
>PF10106 DUF2345: Uncharacterized protein conserved in bacteria (DUF2345); InterPro: IPR018769 This entry represents the C-terminal domain of a subset of the Rhs element Vgr protein family found only in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often encoded far from the type VI secretion locus.
Probab=26.92 E-value=50 Score=29.90 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=17.1
Q ss_pred CCCeEEEEEEeeccceecCCceEEeecC
Q psy8411 68 DKDLVIQFTVKHEQNIDCGGGYVKVFDC 95 (385)
Q Consensus 68 ~k~LVvQYeVk~q~~l~CGGaYiKLl~~ 95 (385)
+..++| .-+-+=-|.|||+||+|=..
T Consensus 106 ~~~I~i--~A~~~I~l~~ggs~i~l~gg 131 (155)
T PF10106_consen 106 EGKIVI--TAKKEITLNAGGSYIRLSGG 131 (155)
T ss_pred CCcEEE--EecCcEEEecCCcEEEEeCC
Confidence 344444 34455569999999998543
No 11
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=25.66 E-value=68 Score=27.72 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.5
Q ss_pred CCCCeEEEEEEeeccceecCCceEEeec
Q psy8411 67 KDKDLVIQFTVKHEQNIDCGGGYVKVFD 94 (385)
Q Consensus 67 ~~k~LVvQYeVk~q~~l~CGGaYiKLl~ 94 (385)
.+.||.|+|++ .+||+|+++=
T Consensus 105 ~~~Pl~l~f~~-------~~~g~l~f~L 125 (128)
T PF02747_consen 105 EDMPLKLEFEL-------ADGGSLKFYL 125 (128)
T ss_dssp TTSEEEEEEEE-------TTTEEEEEEE
T ss_pred CCCCEEEEEEe-------CCCeEEEEEE
Confidence 47899999998 3789999874
No 12
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=24.14 E-value=58 Score=27.42 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=21.9
Q ss_pred ccceeeeeCCCCceEEEECCeeecCC
Q psy8411 149 THLYTLIVKPDNTYDVLIDNESVQNG 174 (385)
Q Consensus 149 tHlYTLii~pdntyeI~ID~~~~~~G 174 (385)
+-.||+.+..++.++++|||+.+...
T Consensus 59 ~G~y~f~~~~~d~~~l~idg~~vid~ 84 (145)
T PF07691_consen 59 TGTYTFSLTSDDGARLWIDGKLVIDN 84 (145)
T ss_dssp SEEEEEEEEESSEEEEEETTEEEEEC
T ss_pred CceEEEEEEecccEEEEECCEEEEcC
Confidence 45699999999999999999987543
No 13
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=23.60 E-value=2.3e+02 Score=27.02 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=59.8
Q ss_pred cceeeeccC-ccccCCCCCeEEEEEEeeccceecCCceEEeecCCCCCCCccCCCCceEEe-cCCCcCCCCceEEEEEee
Q psy8411 53 RFYALSKKF-TPFSNKDKDLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMF-GPDICGPGTKKVHVIFNY 130 (385)
Q Consensus 53 ~~yaIs~~l-~p~~~~~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~d~~~f~~~tpY~IMF-GPD~CG~~~~kvh~I~~~ 130 (385)
..+-||..+ +--....-++||-|..-...++-| ||+-+-+... .-|--|| -+.+|| +-+|-
T Consensus 18 ~~~dls~~l~~lk~L~~gTI~i~Fk~~~~~~~~s------LfsiSn~~~~----n~YF~lyv~~~~~G-------~E~R~ 80 (190)
T PF02973_consen 18 QRVDLSEDLSKLKKLEEGTIVIRFKSDSNSGIQS------LFSISNSTKG----NEYFSLYVSNNKLG-------FELRD 80 (190)
T ss_dssp CCEE-CCSCCHCCT-SSEEEEEEEEESS-SSEEE------EEEEE-TSTT----SEEEEEEEETTEEE-------EEEEE
T ss_pred CcccccchhHHHhcccccEEEEEEecCCCcceeE------EEEecCCCCc----cceEEEEEECCEEE-------EEEec
Confidence 347777777 433445568999998866556654 7763211111 1466666 222444 44554
Q ss_pred CCc--cccccCCCCC----CCCCcccceeeeeC-CCCceEEEECCeeecCC
Q psy8411 131 KGK--NLLINKDIRC----KDDVFTHLYTLIVK-PDNTYDVLIDNESVQNG 174 (385)
Q Consensus 131 k~~--~~~~~~~~~~----~~d~~tHlYTLii~-pdntyeI~ID~~~~~~G 174 (385)
... ++....++.. ..+...|.-++... |+..|.+++||+.+..-
T Consensus 81 ~~~~~~y~~~~~~~v~~~~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~ 131 (190)
T PF02973_consen 81 TKGNQNYNFSRPAKVRGGYKNNVTFNTVAFVADSKNKGYKLYVNGELVSTL 131 (190)
T ss_dssp TTTTCEEEEEESSE--SEETTEES-EEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred CCCCcccccccccEecccccCCceEEEEEEEEecCCCeEEEEeCCeeEEEe
Confidence 332 3333233333 45557888888887 89999999999776644
No 14
>COG4253 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.76 E-value=46 Score=33.47 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=14.2
Q ss_pred EeeccceecCCceEEeecCC
Q psy8411 77 VKHEQNIDCGGGYVKVFDCS 96 (385)
Q Consensus 77 Vk~q~~l~CGGaYiKLl~~~ 96 (385)
-|-.--|.|||+||.|-...
T Consensus 165 Ak~~i~l~agGayitl~~g~ 184 (278)
T COG4253 165 AKKRITLNAGGAYITLDGGN 184 (278)
T ss_pred eeeEEEEecCccEEEEcCCe
Confidence 33334478999999987643
No 15
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=20.23 E-value=2.5e+02 Score=25.93 Aligned_cols=71 Identities=18% Similarity=0.344 Sum_probs=37.8
Q ss_pred ceecCCceEEeecCCCCCCCccCCCCceEEecCCCcCCCCceEEEEEeeCCccccccCCCCCCCCCcccceeeeeCCCCc
Q psy8411 82 NIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNYKGKNLLINKDIRCKDDVFTHLYTLIVKPDNT 161 (385)
Q Consensus 82 ~l~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k~~~~~~~~~~~~~~d~~tHlYTLii~pdnt 161 (385)
.-+||-.||--|....-...+.- --|+|.+.|.+- .....+++.....+.+ |+ -+.++|
T Consensus 5 keeCgtsFvmWf~~GtpvaTlkc-g~YTiVyAP~k~------------------~t~PaPrYISGev~~V-tF-eksd~T 63 (165)
T PF11025_consen 5 KEECGTSFVMWFGEGTPVATLKC-GDYTIVYAPEKD------------------QTDPAPRYISGEVKSV-TF-EKSDST 63 (165)
T ss_pred hhhcceeEEEEecCCcceEEEec-CCEEEEEccccC------------------CCCCCCceeecceEEE-EE-eccCCe
Confidence 35799999988765432222221 115555555431 1122334333333322 22 236999
Q ss_pred eEEEECCeeecC
Q psy8411 162 YDVLIDNESVQN 173 (385)
Q Consensus 162 yeI~ID~~~~~~ 173 (385)
..|.|||+...+
T Consensus 64 vkIkvd~kefst 75 (165)
T PF11025_consen 64 VKIKVDGKEFST 75 (165)
T ss_pred EEEEECCeEccc
Confidence 999999987543
Done!