Query psy8411
Match_columns 385
No_of_seqs 200 out of 768
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:07:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jhn_A Calnexin; jelly-roll, b 100.0 5E-125 2E-129 945.4 26.7 333 2-336 26-421 (424)
2 3rg0_A Calreticulin; beta-sand 100.0 2E-125 7E-130 924.0 21.2 315 3-348 8-324 (332)
3 3pow_A Calreticulin; legume le 100.0 3.8E-96 1E-100 702.0 18.1 250 3-347 13-264 (265)
4 1hhn_A Calreticulin; molecular 100.0 2.6E-40 8.8E-45 276.8 6.4 100 185-284 1-100 (101)
5 1hhn_A Calreticulin; molecular 99.9 3.7E-26 1.3E-30 191.2 6.9 84 173-268 8-98 (101)
6 1jhn_A Calnexin; jelly-roll, b 99.9 8E-26 2.7E-30 227.5 10.5 137 173-317 254-408 (424)
7 3rg0_A Calreticulin; beta-sand 99.5 5.1E-16 1.7E-20 152.4 1.0 118 173-337 198-323 (332)
8 3ici_C Calnexin, PP90; protein 99.4 2.8E-13 9.6E-18 94.8 3.4 36 215-250 3-38 (38)
9 3ici_C Calnexin, PP90; protein 98.1 1.1E-06 3.8E-11 61.5 2.9 28 199-226 4-38 (38)
10 3zyp_A CIP1; metal binding pro 79.5 5.9 0.0002 35.6 8.0 78 4-84 2-80 (218)
11 2quo_A Heat-labIle enterotoxin 54.5 21 0.00073 29.5 5.4 77 28-113 32-124 (126)
12 4b1m_A Levanase; hydrolase, CB 39.4 1.5E+02 0.005 25.8 9.0 91 68-172 63-155 (185)
13 4azz_A Levanase; hydrolase; 1. 43.7 7 0.00024 33.4 0.0 91 68-173 42-135 (172)
14 2kbg_A N-CAM 2, neural cell ad 28.4 63 0.0022 26.1 4.4 62 104-168 20-83 (114)
15 3p91_A Proliferating cell nucl 26.0 43 0.0015 30.9 3.3 21 67-95 234-254 (265)
16 2ca6_A RAN GTPase-activating p 24.6 16 0.00054 34.3 0.0 8 150-157 188-195 (386)
17 3am2_A Heat-labIle enterotoxin 22.0 89 0.003 29.2 4.5 24 87-113 294-317 (328)
18 2v73_A CBM40, putative EXO-alp 21.6 83 0.0028 28.6 4.2 109 52-177 24-135 (191)
No 1
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1
Probab=100.00 E-value=4.9e-125 Score=945.42 Aligned_cols=333 Identities=40% Similarity=0.796 Sum_probs=298.6
Q ss_pred ccccccccccccCCeeecCCCC--------CccceEEEecccccCCcccCcceeeCccccceeeeccC-ccccCCCCCeE
Q psy8411 2 RLLTKGYQNAWEKEWVYSQHPG--------KEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKF-TPFSNKDKDLV 72 (385)
Q Consensus 2 ~~~~e~f~~~w~~rWv~S~~~~--------~~~G~w~~~~g~~~~~~~~d~GL~~~~~a~~yaIs~~l-~p~~~~~k~LV 72 (385)
.+|.|+|+++|.+|||+|++++ .|.|+|.+++|++++ ..+|+||||+++|||||||++| +||+|++|+||
T Consensus 26 ~~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~-~~~DkGL~~~~~ar~yaISa~~~kpf~~~~k~LV 104 (424)
T 1jhn_A 26 VYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETK-LPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLI 104 (424)
T ss_dssp CSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCS-STTCBCCEEECSSCCCEEEEEEEEEECSSSSCEE
T ss_pred eeEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCC-CccccceeeccchhHHHHHHhhcCccccCCCCEE
Confidence 4799999999999999999863 356999999999986 5789999999999999999999 89999999999
Q ss_pred EEEEEeeccceecCCceEEeecC--CCCCCCccCCCCceEEecCCCcCCCCceEEEEEeeCCcc-------ccccCCCCC
Q psy8411 73 IQFTVKHEQNIDCGGGYVKVFDC--SLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNYKGKN-------LLINKDIRC 143 (385)
Q Consensus 73 vQYeVk~q~~l~CGGaYiKLl~~--~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k~~~-------~~~~~~~~~ 143 (385)
||||||||++|+|||||||||+. ++++++|+++|||+||||||+||. ++||||||||+|++ |+.+++++|
T Consensus 105 vQYeVk~q~~idCGGaYiKLl~~~~~~d~~~f~~~TpY~IMFGPD~CG~-~~kvH~I~~~knp~~g~~~ekh~~~~~~~~ 183 (424)
T 1jhn_A 105 VQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGE-DYKLHFIFRHKNPKTGVYEEKHAKRPDADL 183 (424)
T ss_dssp EEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEESS-CCEEEEEEEEECTTTCCEEEECCCCCSSCC
T ss_pred EEEEEEecccccccceEEEeecCcccCCHhHcCCCCCceEeccCCccCC-CCeEEEEEecCCCCCCchhhhcccCCcccc
Confidence 99999999999999999999996 489999999999999999999996 89999999999986 887777654
Q ss_pred ---CCCCcccceeeeeCCCCceEEEECCeeecCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q psy8411 144 ---KDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWD--FLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEK 218 (385)
Q Consensus 144 ---~~d~~tHlYTLii~pdntyeI~ID~~~~~~G~l~~dwd--~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWde 218 (385)
.+|++||||||||||||||+|+|||++|.+|||++||+ ++||++|+||+++||+|||++++|+||+|+||+|||+
T Consensus 184 ~~~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~KPeDWde 263 (424)
T 1jhn_A 184 KTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNE 263 (424)
T ss_dssp THHHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC-------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCCCTTCCS
T ss_pred cccccCCCceEEEEEEcCCCcEEEEECCceecccccHHhccccCCCcccccCccccCccccccccccCCcccCCcccccc
Confidence 58999999999999999999999999999999999999 9999999999999999999999999999999999973
Q ss_pred ---------------------CCCCCCCCCCCCCCCCCCCCCCcc-------------------CCccCCCCCcccccCC
Q psy8411 219 ---------------------PEHIPNPDAVKPADWDDEMDGEWE-------------------APMIDNPEYKGVWAPK 258 (385)
Q Consensus 219 ---------------------~~~I~dP~a~kP~dWd~~~dG~W~-------------------~p~I~NP~ykG~W~p~ 258 (385)
|++|+||+|+||++|+++++|+|+ ||||.||+|||+|+||
T Consensus 264 ~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp 343 (424)
T 1jhn_A 264 DAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPP 343 (424)
T ss_dssp SCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCCCSCCCC
T ss_pred CCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCccccCcccCC
Confidence 568888888888888887766655 6888899999999999
Q ss_pred cccCCCCCccccCCccCCCCCCCCccccCCCCcceeeeeeeeeccCceeeeeeeccCHHHHHHHHHhhcccCchhHHh
Q psy8411 259 QIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAKKYAEDIWKPAFEGEKK 336 (385)
Q Consensus 259 ~I~NP~Y~g~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~ifDNili~dd~~~A~~~~~~t~~~~~~~E~~ 336 (385)
+|+||+|+|+|+||+|+||+|+++.+++.+.+|++||||||||++|+||||||||+|+++|++++++||+.++..|.+
T Consensus 344 ~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~k~~~e~~ 421 (424)
T 1jhn_A 344 MIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAADGA 421 (424)
T ss_dssp EEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC-------
T ss_pred ccCCCcccccccccccCCccccCCCcccccCcccEEEEEeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877643
No 2
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}
Probab=100.00 E-value=1.9e-125 Score=923.96 Aligned_cols=315 Identities=68% Similarity=1.213 Sum_probs=278.0
Q ss_pred cccccccc--cccCCeeecCCCCCccceEEEecccccCCcccCcceeeCccccceeeeccCccccCCCCCeEEEEEEeec
Q psy8411 3 LLTKGYQN--AWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDKDLVIQFTVKHE 80 (385)
Q Consensus 3 ~~~e~f~~--~w~~rWv~S~~~~~~~G~w~~~~g~~~~~~~~d~GL~~~~~a~~yaIs~~l~p~~~~~k~LVvQYeVk~q 80 (385)
+|.|+|++ +|++|||+|+++ +++|+|.+++|++|++.++|+||||+++|||||||++|+||+|++|+||||||||||
T Consensus 8 yF~E~F~d~~~w~~rWv~S~~~-~~~G~w~~~~g~~~~~~~~DkGL~t~~~ak~yAISakf~pf~n~~k~LVvQYeVK~e 86 (332)
T 3rg0_A 8 YFKEQFLDGDAWTNRWVESKHK-SDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQTLVVQFTVKHE 86 (332)
T ss_dssp EEEECCCSGGGGGGTEEECCSS-SSCCCEEEECCSSCSSTTTTCEEEECSSSEEEEEEEEEEEECCTTSCEEEEEEEEET
T ss_pred EEEeecCCCCcccCCceeCCCc-ccCCeEEeecCcccCCcccccceeecchhhhhhhhcccCCccCCCCCEEEEEEEEcc
Confidence 79999985 899999999997 689999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCceEEeecCCCCCCCccCCCCceEEecCCCcCCCCceEEEEEeeCCccccccCCCCCCCCCcccceeeeeCCCC
Q psy8411 81 QNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNYKGKNLLINKDIRCKDDVFTHLYTLIVKPDN 160 (385)
Q Consensus 81 ~~l~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k~~~~~~~~~~~~~~d~~tHlYTLii~pdn 160 (385)
++|+|||||||||+++++++.|+++|||+||||||+||++++||||||+|+|++|+++++++|++|++||||||||+|||
T Consensus 87 ~~idCGGaYiKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~k~~~h~~kk~i~~~~D~~THLYTLIi~pdn 166 (332)
T 3rg0_A 87 QNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDN 166 (332)
T ss_dssp TCCSEEECCEEEECSSCCGGGCCTTSCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCCBCCCSSSEEEEEEEECTTS
T ss_pred cccccCceEEEeecCcCCHhhcCCCCcceEEecCcccCCCCCEEEEEEEeCCccccccCCCCCCCCCCCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ceEEEECCeeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8411 161 TYDVLIDNESVQNGNLEDDWDFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGE 240 (385)
Q Consensus 161 tyeI~ID~~~~~~G~l~~dwd~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWde~~~I~dP~a~kP~dWd~~~dG~ 240 (385)
||+|+|||++|.+|||++||+++||++|+||+|+||+||+++++||||+|+||+|||+
T Consensus 167 tyeI~ID~~~v~~GsL~~Dwd~~ppk~I~Dp~d~KPedWdd~~~I~DP~a~KPeDWd~---------------------- 224 (332)
T 3rg0_A 167 TYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK---------------------- 224 (332)
T ss_dssp EEEEEETTEEEEEEEHHHHSCCSCCSEEECTTCCCCTTCCCCCCCC----------------------------------
T ss_pred eEEEEECCEEEecccccCCCCcCCccccCCcccCCcccCcCcccCCCcccCCcccccc----------------------
Confidence 9999999999999999999999999999999999999999999999999999999984
Q ss_pred ccCCccCCCCCcccccCCcccCCCCCccccCCccCCCCCCCCccccCCCCcceeeeeeeeeccCceeeeeeeccCHHHHH
Q psy8411 241 WEAPMIDNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAK 320 (385)
Q Consensus 241 W~~p~I~NP~ykG~W~p~~I~NP~Y~g~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~ifDNili~dd~~~A~ 320 (385)
|+|||+|+|++|+||+|+|+|.||+|+||+|++|++++.+.+|++||||||||++|+||||||||+|+++|+
T Consensus 225 --------p~YkG~Wkp~~I~NP~YkG~W~p~~I~NP~Y~~D~~~~~~~~i~~iG~ElWq~~sg~iFDNilItdd~~~A~ 296 (332)
T 3rg0_A 225 --------GGSGGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAE 296 (332)
T ss_dssp ------------------------CCCCCCCCEEECTTCCCCTTTTCCSCEEEEEEEEEESSCCEEEEEEEEESCHHHHH
T ss_pred --------ccccccccccccCCCcccCCccCCccCCCCCcCCcchhccccccEEEEEEEeccCCcEEeeEEEcCCHHHHH
Confidence 339999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCchhHHhhhhhhHHHHHHH
Q psy8411 321 KYAEDIWKPAFEGEKKMKEKQDEEERKA 348 (385)
Q Consensus 321 ~~~~~t~~~~~~~E~~~~~~~~~~e~~~ 348 (385)
+++++||+.+++.|++|++++++++|-+
T Consensus 297 ~~~~~t~~~~~~~Ek~~~~~~~~~~~~~ 324 (332)
T 3rg0_A 297 EFGNETWGVTKAAEKQMKDKQDEEQRLK 324 (332)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHhhh
Confidence 9999999999999999988887766543
No 3
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*
Probab=100.00 E-value=3.8e-96 Score=702.00 Aligned_cols=250 Identities=68% Similarity=1.162 Sum_probs=234.4
Q ss_pred cccccccc--cccCCeeecCCCCCccceEEEecccccCCcccCcceeeCccccceeeeccCccccCCCCCeEEEEEEeec
Q psy8411 3 LLTKGYQN--AWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDKDLVIQFTVKHE 80 (385)
Q Consensus 3 ~~~e~f~~--~w~~rWv~S~~~~~~~G~w~~~~g~~~~~~~~d~GL~~~~~a~~yaIs~~l~p~~~~~k~LVvQYeVk~q 80 (385)
+|.|+|++ +|.+|||+|+++ +++|+|.+++|++|++.++|+||||+++|||||||++|+||+|++|+||||||||||
T Consensus 13 ~F~E~Fdd~~~w~~rWv~S~~k-k~~G~w~~~~g~~~~~~~~DkGL~t~~~Ak~yaISakl~pf~~~~k~LVvQYeVk~q 91 (265)
T 3pow_A 13 YFKEQFLDGDGWTSRWIESKHK-SDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHE 91 (265)
T ss_dssp EEEECCCSGGGGGGTEEECCSS-SCCCCEEEECCSSCSCTTTTCEEEECSSSEEEEEEEEEEEECCTTSCEEEEEEEECT
T ss_pred EEEeecCCCCcccCCeeeCCCc-CcCCeEEeecccccCCcccccceeecchhhhhhhhcccCCccCCCCCEEEEEEEEec
Confidence 79999985 899999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCceEEeecCCCCCCCccCCCCceEEecCCCcCCCCceEEEEEeeCCccccccCCCCCCCCCcccceeeeeCCCC
Q psy8411 81 QNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNYKGKNLLINKDIRCKDDVFTHLYTLIVKPDN 160 (385)
Q Consensus 81 ~~l~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k~~~~~~~~~~~~~~d~~tHlYTLii~pdn 160 (385)
++|+|||||||||+.+++++.|+++|||+||||||+||++++||||||+|+|++|+++++++|++|++||||||||+|||
T Consensus 92 ~~idCGGaYiKLl~~~~~~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~k~~~h~~~~~~~~~~D~~tHLYTLIi~pdn 171 (265)
T 3pow_A 92 QNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDN 171 (265)
T ss_dssp TCCSEEECCEEEECTTCCGGGCCTTSCCSEEEEEEEESTTCEEEEEEEEETTEEEECSSCCBCCCSSSEEEEEEEECTTS
T ss_pred cccccCceEEEeecCCCCHhhcCCCCCceEEecCcccCCCCCEEEEEEEcCCccccccCCCCCCCCCCCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ceEEEECCeeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy8411 161 TYDVLIDNESVQNGNLEDDWDFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGE 240 (385)
Q Consensus 161 tyeI~ID~~~~~~G~l~~dwd~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWde~~~I~dP~a~kP~dWd~~~dG~ 240 (385)
||+|+|||++|.+|||++||+++||
T Consensus 172 tyeI~ID~~~v~~GsL~~d~df~Pp------------------------------------------------------- 196 (265)
T 3pow_A 172 TYEVKIDNSQVESGSLEDDWDFLPG------------------------------------------------------- 196 (265)
T ss_dssp EEEEEETTEEEEEEEHHHHSCC----------------------------------------------------------
T ss_pred eEEEEECCEEeeeccccCccccCCC-------------------------------------------------------
Confidence 9999999999999999999999986
Q ss_pred ccCCccCCCCCcccccCCcccCCCCCccccCCccCCCCCCCCccccCCCCcceeeeeeeeeccCceeeeeeeccCHHHHH
Q psy8411 241 WEAPMIDNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAK 320 (385)
Q Consensus 241 W~~p~I~NP~ykG~W~p~~I~NP~Y~g~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~ifDNili~dd~~~A~ 320 (385)
.+|+.+|.+.+|++||||||||+|||||||||||||+++|+
T Consensus 197 ---------------------------------------~~d~~ly~~~~i~~vGldlWQvksGtiFDNiLITDd~~~A~ 237 (265)
T 3pow_A 197 ---------------------------------------SGDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAE 237 (265)
T ss_dssp -------------------------------------------CTTCCSCEEEEEEEEEESSCCCEEEEEEEESCHHHHH
T ss_pred ---------------------------------------CCCccccccccccEEEEEEEEecCCeEeccEEecCCHHHHH
Confidence 23455678899999999999999999999999999999999
Q ss_pred HHHHhhcccCchhHHhhhhhhHHHHHH
Q psy8411 321 KYAEDIWKPAFEGEKKMKEKQDEEERK 347 (385)
Q Consensus 321 ~~~~~t~~~~~~~E~~~~~~~~~~e~~ 347 (385)
+++++||+.++++|++|++++++++++
T Consensus 238 ~~~eetw~~~k~~Ek~~~~~~~~~~~~ 264 (265)
T 3pow_A 238 EFGNETWGVTKAAEKQMKDKQDEEQRL 264 (265)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999998877776653
No 4
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A
Probab=100.00 E-value=2.6e-40 Score=276.80 Aligned_cols=100 Identities=75% Similarity=1.512 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccCCCCCcccccCCcccCCC
Q psy8411 185 PKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNPEYKGVWAPKQIENPD 264 (385)
Q Consensus 185 p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWde~~~I~dP~a~kP~dWd~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~ 264 (385)
|++|+||+++||+||+++++|+||+|+||+|||++++|+||+|+||++|+++++|+|++|||.||+|+|+|+|++|+||+
T Consensus 1 p~~I~Dp~~~KPeDWd~~~~I~DP~a~KPeDWde~~~I~dP~~~kP~dWd~~~~G~W~~p~I~NP~ykG~W~pp~I~NP~ 80 (101)
T 1hhn_A 1 SKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPD 80 (101)
T ss_dssp CCSBCCSTTCCCSCCSTTSEECCSSCCCCSTTCCCSEEECTTCCCCTTCCHHHHSSCCCCEEECTTCCSSCCCCCEECSS
T ss_pred CcccCCcccCCccccccccccCCcccCCccCccccccCCCcccCCccccCcccCCcccCCcCCCccCcCcccCCccCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCccCCCCCCCCcc
Q psy8411 265 YKGVWVHPEIDNPEYSPDPE 284 (385)
Q Consensus 265 Y~g~W~p~~I~NP~y~~d~~ 284 (385)
|+|.|+|++|+||+|+++..
T Consensus 81 Ykg~W~p~~I~NP~y~~d~~ 100 (101)
T 1hhn_A 81 YKGTWIHPEIDNPEYSPDAN 100 (101)
T ss_dssp CCCCCCCCCBCCTTCCSSSC
T ss_pred CCCCccCCccCCCCccCCCC
Confidence 99999999999999999864
No 5
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A
Probab=99.92 E-value=3.7e-26 Score=191.22 Aligned_cols=84 Identities=49% Similarity=1.029 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCccCCc
Q psy8411 173 NGNLEDDWDFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEK-------PEHIPNPDAVKPADWDDEMDGEWEAPM 245 (385)
Q Consensus 173 ~G~l~~dwd~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWde-------~~~I~dP~a~kP~dWd~~~dG~W~~p~ 245 (385)
+.+.++||+. +++|+||+++||+||+++++|+||.++||++|++ +++|+|| .++|+|+++|
T Consensus 8 ~~~KPeDWd~--~~~I~DP~a~KPeDWde~~~I~dP~~~kP~dWd~~~~G~W~~p~I~NP----------~ykG~W~pp~ 75 (101)
T 1hhn_A 8 DAAKPEDWDE--RAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNP----------EYKGEWKPRQ 75 (101)
T ss_dssp TTCCCSCCST--TSEECCSSCCCCSTTCCCSEEECTTCCCCTTCCHHHHSSCCCCEEECT----------TCCSSCCCCC
T ss_pred ccCCcccccc--ccccCCcccCCccCccccccCCCcccCCccccCcccCCcccCCcCCCc----------cCcCcccCCc
Confidence 3567899998 5799999999999999999999999999999994 8899999 6789999999
Q ss_pred cCCCCCcccccCCcccCCCCCcc
Q psy8411 246 IDNPEYKGVWAPKQIENPDYKGV 268 (385)
Q Consensus 246 I~NP~ykG~W~p~~I~NP~Y~g~ 268 (385)
|.||+|+|.|+|++|+||+|++.
T Consensus 76 I~NP~Ykg~W~p~~I~NP~y~~d 98 (101)
T 1hhn_A 76 IDNPDYKGTWIHPEIDNPEYSPD 98 (101)
T ss_dssp EECSSCCCCCCCCCBCCTTCCSS
T ss_pred cCCCCCCCCccCCccCCCCccCC
Confidence 99999999999999999999984
No 6
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1
Probab=99.92 E-value=8e-26 Score=227.53 Aligned_cols=137 Identities=35% Similarity=0.649 Sum_probs=112.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCcCCCCCCCCCCCCC-------CCCCCCCCCC---------CCCCCC
Q psy8411 173 NGNLEDDWDFLPPKKIKDPEAKKPEDWDDR--PTIADPNDTKPEDWEK-------PEHIPNPDAV---------KPADWD 234 (385)
Q Consensus 173 ~G~l~~dwd~~~p~~I~DP~d~KP~DWdd~--~~I~DP~a~KP~dWde-------~~~I~dP~a~---------kP~dWd 234 (385)
...+++||+...|.+|+||+++||+||++. ++|+||+|+||+|||+ +++|+||.|+ +|..+|
T Consensus 254 ~a~KPeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~N 333 (424)
T 1jhn_A 254 DAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDN 333 (424)
T ss_dssp SCCCCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEEC
T ss_pred ccCCccccccCCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCC
Confidence 468899999999999999999999999775 4999999999999995 7999999998 688999
Q ss_pred CCCCCCccCCccCCCCCcccccCCcccCCCCCccccCCccCCCCCCCCccccCCCCcceeeeeeeeeccCceeeeeeecc
Q psy8411 235 DEMDGEWEAPMIDNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITD 314 (385)
Q Consensus 235 ~~~dG~W~~p~I~NP~ykG~W~p~~I~NP~Y~g~W~p~~I~NP~y~~d~~~~~~~~i~~vG~elW~~~~g~ifDNili~d 314 (385)
..++|.|+||||+||+|+|.|+|++|+||+|++.+.|-.+.+-.+..- .+ ..--+++.|+.. +|.|++-++.
T Consensus 334 P~ykG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~-El--W~~~~g~~FDNi-----lItdd~~~A~ 405 (424)
T 1jhn_A 334 PNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGL-EL--WSMTSDIFFDNF-----IVCGDRRVVD 405 (424)
T ss_dssp TTCCCSCCCCEEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEE-CC--CCSSSCCBCEEE-----EEESSSHHHH
T ss_pred ccccCcccCCccCCCcccccccccccCCccccCCCcccccCcccEEEE-Ee--EEeeCCcEEeeE-----EEcCCHHHHH
Confidence 999999999999999999999999999999999987766543222210 11 112245688887 6777777776
Q ss_pred CHH
Q psy8411 315 DIA 317 (385)
Q Consensus 315 d~~ 317 (385)
...
T Consensus 406 ~~~ 408 (424)
T 1jhn_A 406 DWA 408 (424)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 7
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}
Probab=99.55 E-value=5.1e-16 Score=152.44 Aligned_cols=118 Identities=33% Similarity=0.614 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCccCCCCCc
Q psy8411 173 NGNLEDDWDFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNPEYK 252 (385)
Q Consensus 173 ~G~l~~dwd~~~p~~I~DP~d~KP~DWdd~~~I~DP~a~KP~dWde~~~I~dP~a~kP~dWd~~~dG~W~~p~I~NP~yk 252 (385)
+...++||+. +++|+||+++||+|||++++ +|.|+||||+||+|+
T Consensus 198 ~d~KPedWdd--~~~I~DP~a~KPeDWd~p~Y---------------------------------kG~Wkp~~I~NP~Yk 242 (332)
T 3rg0_A 198 DAAKPEDWDE--RAKIDDPTDSKPEDWDKGGS---------------------------------GGEWKPRQIDNPDYK 242 (332)
T ss_dssp TCCCCTTCCC--CCCCC-------------------------------------------------------------CC
T ss_pred ccCCcccCcC--cccCCCcccCCccccccccc---------------------------------cccccccccCCCccc
Confidence 3567899987 68999999999999997553 499999999999999
Q ss_pred ccccCCcccCCCCCccccCCccCCCCCCCCccccCCCCcc----eeeeeeeeeccCceeeeeeeccCHH----HHHHHHH
Q psy8411 253 GVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEIC----TIGFDLWQVKSGTIFDNVLITDDIA----TAKKYAE 324 (385)
Q Consensus 253 G~W~p~~I~NP~Y~g~W~p~~I~NP~y~~d~~~~~~~~i~----~vG~elW~~~~g~ifDNili~dd~~----~A~~~~~ 324 (385)
|.|+||+|+||+|+.. ++| |.-.+..+....|+ ++.|+.. +|.|++-.+.... .+.+-++
T Consensus 243 G~W~p~~I~NP~Y~~D------~~~-~~~~~i~~iG~ElWq~~sg~iFDNi-----lItdd~~~A~~~~~~t~~~~~~~E 310 (332)
T 3rg0_A 243 GTWIHPEIDNPEYSPD------ANI-YAYDSFAVLGLDLWQVKSGTIFDNF-----LITNDEAYAEEFGNETWGVTKAAE 310 (332)
T ss_dssp CCCCCCEEECTTCCCC------TTT-TCCSCEEEEEEEEEESSCCEEEEEE-----EEESCHHHHHHHHHTTHHHHHHHH
T ss_pred CCccCCccCCCCCcCC------cch-hccccccEEEEEEEeccCCcEEeeE-----EEcCCHHHHHHHHHHhhhhhhHHH
Confidence 9999999999999964 233 33233333334454 4688888 8888888888776 3445556
Q ss_pred hhcccCchhHHhh
Q psy8411 325 DIWKPAFEGEKKM 337 (385)
Q Consensus 325 ~t~~~~~~~E~~~ 337 (385)
+.+...+++|+++
T Consensus 311 k~~~~~~~~~~~~ 323 (332)
T 3rg0_A 311 KQMKDKQDEEQRL 323 (332)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHhh
Confidence 5554445555544
No 8
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=99.36 E-value=2.8e-13 Score=94.84 Aligned_cols=36 Identities=56% Similarity=1.242 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCCccCCCC
Q psy8411 215 DWEKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNPE 250 (385)
Q Consensus 215 dWde~~~I~dP~a~kP~dWd~~~dG~W~~p~I~NP~ 250 (385)
-+++|++|+||+|+||+|||++++|+|++|||+||+
T Consensus 3 ~~dep~~IpDP~a~KP~DWdde~DGeWe~P~I~NPk 38 (38)
T 3ici_C 3 HMDEPKFIPDPNAEKPDDWNEDMDGEWEAPRISNPA 38 (38)
T ss_pred cccccccccCCCCCCCCCcCcCcCCcccCCcCCCcC
Confidence 357788999999999999999999999999999995
No 9
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=98.13 E-value=1.1e-06 Score=61.54 Aligned_cols=28 Identities=43% Similarity=0.870 Sum_probs=21.3
Q ss_pred CCCCCCcCCCCCCCCCCCCC-------CCCCCCCC
Q psy8411 199 WDDRPTIADPNDTKPEDWEK-------PEHIPNPD 226 (385)
Q Consensus 199 Wdd~~~I~DP~a~KP~dWde-------~~~I~dP~ 226 (385)
++++++|+||+|+||+|||+ +++|+||.
T Consensus 4 ~dep~~IpDP~a~KP~DWdde~DGeWe~P~I~NPk 38 (38)
T 3ici_C 4 MDEPKFIPDPNAEKPDDWNEDMDGEWEAPRISNPA 38 (38)
T ss_pred ccccccccCCCCCCCCCcCcCcCCcccCCcCCCcC
Confidence 45667788888888888873 78999983
No 10
>3zyp_A CIP1; metal binding protein, calcium-binding, CBM-containing, beta sandwich jelly roll, carbohydrate-binding; HET: NAG; 1.50A {Hypocrea jecorina}
Probab=79.49 E-value=5.9 Score=35.62 Aligned_cols=78 Identities=10% Similarity=0.219 Sum_probs=48.2
Q ss_pred ccccccccc-cCCeeecCCCCCccceEEEecccccCCcccCcceeeCccccceeeeccCccccCCCCCeEEEEEEeeccc
Q psy8411 4 LTKGYQNAW-EKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDKDLVIQFTVKHEQN 82 (385)
Q Consensus 4 ~~e~f~~~w-~~rWv~S~~~~~~~G~w~~~~g~~~~~~~~d~GL~~~~~a~~yaIs~~l~p~~~~~k~LVvQYeVk~q~~ 82 (385)
++|.|.++| ..+|........-.|...+.....+. +.+.|.++..+.=|.-...+.........+-+.|=||+...
T Consensus 2 ~sddFEsg~~~~~W~~~~~~~~g~g~v~vdt~~a~s---G~~slrvt~~~~~~~~~~~~~~~~~~~~~~y~r~~v~~~~~ 78 (218)
T 3zyp_A 2 ISDDFESGWDQTKWPISAPDCNQGGTVSLDTTVAHS---GSNSMKVVGGPNGYCGHIFFGTTQVPTGDVYVRAWIRLQTA 78 (218)
T ss_dssp EEECSTTCCCTTTSCEECSSCCCSCEEEEESSSCSS---SSCEEEEECCSSGGGGCEEEEECCCCSSSEEEEEEEEESSC
T ss_pred cccccccCCCCCCceecCCCCCCccEEEEccccccC---CceEEEEEccCCCccceEEeecccCCCceEEEEEEEEeccc
Confidence 578998874 68897755432456888888777664 55788776554322211111222233456888888888766
Q ss_pred ee
Q psy8411 83 ID 84 (385)
Q Consensus 83 l~ 84 (385)
+.
T Consensus 79 ~~ 80 (218)
T 3zyp_A 79 LG 80 (218)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 11
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=54.49 E-value=21 Score=29.53 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=41.0
Q ss_pred eEEEecccccCCcccCcceeeCccc-cceeeeccCc---cccCCCCCeEEEEEEeeccceecC------------CceEE
Q psy8411 28 KFVLSAGKFYNDAEKDKGIQTSQDA-RFYALSKKFT---PFSNKDKDLVIQFTVKHEQNIDCG------------GGYVK 91 (385)
Q Consensus 28 ~w~~~~g~~~~~~~~d~GL~~~~~a-~~yaIs~~l~---p~~~~~k~LVvQYeVk~q~~l~CG------------GaYiK 91 (385)
.|+-+....+.. .-..-|..+..+ ++-.+++++- -++|.=..| ||++|.+--| |.|+-
T Consensus 32 dwrssnsypwtq-klnlhltitatgqkyrilaskivdfniysnnfnnl-----vkleqslgdgvkdhyvdisldagqyvl 105 (126)
T 2quo_A 32 DWRSSNSYPWTQ-KLNLHLTITATGQKYRILASKIVDFNIYSNNFNNL-----VKLEQSLGDGVKDHYVDISLDAGQYVL 105 (126)
T ss_dssp EEECSSCBCTTC-CEEEEEEECSSSEEEEEEECTTEEEEEEECTTSSC-----EEEEEECCCSSSCEEEEEEECSEEEEE
T ss_pred eccccCCCcchh-eeeeEEEEEecCcEEeeeeeeeeeeEeeccchhHH-----HHHHHHhcccchhceEEEEecCCcEEE
Confidence 566554433321 112234333333 5555666662 233332334 4566555433 66777
Q ss_pred eecCCCCCCCccCCCCceEEec
Q psy8411 92 VFDCSLEQTNMHGESPYLIMFG 113 (385)
Q Consensus 92 Ll~~~~d~~~f~~~tpY~IMFG 113 (385)
++..+ ..+++.-||+|+|-
T Consensus 106 vmkan---ssysgnypysilfq 124 (126)
T 2quo_A 106 VMKAN---SSYSGNYPYSILFQ 124 (126)
T ss_dssp EEEES---SCCSSCBCCEEEEE
T ss_pred EEecc---CcccCCCCceEeee
Confidence 66654 34788999999994
No 12
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=39.39 E-value=1.5e+02 Score=25.76 Aligned_cols=91 Identities=10% Similarity=0.173 Sum_probs=47.4
Q ss_pred CCCeEEEEEEeeccceecCCceEEeecCCCCCCCccCCCCceEEecCCCcCCCCceEEEEEeeCC-ccc-cccCCCCCCC
Q psy8411 68 DKDLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNYKG-KNL-LINKDIRCKD 145 (385)
Q Consensus 68 ~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k~-~~~-~~~~~~~~~~ 145 (385)
-.+++|+-+||+..+-.+|-+-|- |..+.+ ...-|.+.+.|. .+++.+. ++.+ ... +...+..+..
T Consensus 63 ~~Df~le~dvk~~~~~~~g~~Gi~-fR~~~d-----~~~gY~~~i~~~-----~~~~~l~-k~~~g~~~~L~~~~~~~~~ 130 (185)
T 4b1m_A 63 GSDFTYESDITIKDGNGRGAGALM-FRSDKD-----AKNGYLANVDAK-----HDLVKFF-KFENGAASVIAEYKTPIDV 130 (185)
T ss_dssp ESSEEEEEEEEEEEEEEEEEEEEE-EEECTT-----SSSEEEEEEETT-----TTEEEEE-EEETTEEEEEEEEECCCCS
T ss_pred ccCEEEEEEEEEcCCCCcceEEEE-EEEcCC-----CCCcEEEEEECC-----CCEEEEE-EEeCCcEEEeeeccccCCC
Confidence 356999999998764211212232 332211 224588888774 2455443 4333 222 2222222222
Q ss_pred CCcccceeeeeCCCCceEEEECCeeec
Q psy8411 146 DVFTHLYTLIVKPDNTYDVLIDNESVQ 172 (385)
Q Consensus 146 d~~tHlYTLii~pdntyeI~ID~~~~~ 172 (385)
...|-++++++ .++.+++|||+.+.
T Consensus 131 -g~w~~l~I~~~-G~~i~~~vnG~~v~ 155 (185)
T 4b1m_A 131 -NKKYHLKTEAE-GDRFKIYLDDRLVI 155 (185)
T ss_dssp -SCCEEEEEEEE-TTEEEEEETTEEEE
T ss_pred -CCeEEEEEEEE-CCEEEEEECCEEEE
Confidence 33444445554 77899999998654
No 13
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Probab=43.69 E-value=7 Score=33.38 Aligned_cols=91 Identities=12% Similarity=0.248 Sum_probs=42.0
Q ss_pred CCCeEEEEEEeeccceecCCceEEeecCCCCCCCccCCCCceEEecCCCcCCCCceEEEEEeeC-Cccc-cccCCCCCCC
Q psy8411 68 DKDLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNYK-GKNL-LINKDIRCKD 145 (385)
Q Consensus 68 ~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~k-~~~~-~~~~~~~~~~ 145 (385)
..+++|+.+||+..+-.+|.+=|-+- .+.+ ...-|.+.|.|. .+++.|. +.. +... +...+..+.
T Consensus 42 ~~df~le~~v~~~~~~~~~~~Gi~fR-~~~d-----~~~~Y~~~i~~~-----~~~~~l~-~~~~G~~~~l~~~~~~~~- 108 (172)
T 4azz_A 42 GSDFTYESDITIKDGNGRGAGALMFR-SDKD-----AKNGYLANVDAK-----HDLVKFF-KFENGAASVIAEYKTPID- 108 (172)
Confidence 46678888888765311233323222 1111 123578777663 2344332 221 2111 111111122
Q ss_pred CCcccceeeeeCC-CCceEEEECCeeecC
Q psy8411 146 DVFTHLYTLIVKP-DNTYDVLIDNESVQN 173 (385)
Q Consensus 146 d~~tHlYTLii~p-dntyeI~ID~~~~~~ 173 (385)
. ..-|+|-|.- .++.+++|||+.+.+
T Consensus 109 ~--g~w~~l~I~~~G~~i~~~vnG~~v~~ 135 (172)
T 4azz_A 109 V--NKKYHLKTEAEGDRFKIYLDDRLVID 135 (172)
Confidence 2 2234554443 667999999876543
No 14
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Probab=28.38 E-value=63 Score=26.11 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=36.6
Q ss_pred CCCCceEEecCCCcCCCCceEEEEEeeCCcccc-ccCCCCCCCCCcccceeee-eCCCCceEEEECC
Q psy8411 104 GESPYLIMFGPDICGPGTKKVHVIFNYKGKNLL-INKDIRCKDDVFTHLYTLI-VKPDNTYDVLIDN 168 (385)
Q Consensus 104 ~~tpY~IMFGPD~CG~~~~kvh~I~~~k~~~~~-~~~~~~~~~d~~tHlYTLi-i~pdntyeI~ID~ 168 (385)
..+-+.|..-|-.-|. .-..++++.|+..... .... ......+.-|+|. |.|+..|++||=.
T Consensus 20 ~~~sv~L~W~p~~dgg-sPI~~Y~I~yr~~~~~~w~~~--~~~~~~~~~~~l~~L~p~t~Y~frV~A 83 (114)
T 2kbg_A 20 SGKSFKLSITKQDDGG-APILEYIVKYRSKDKEDQWLE--KKVQGNKDHIILEHLQWTMGYEVQITA 83 (114)
T ss_dssp STTCEEEEECCCCCSS-SCCSEEEEEEEESSCCSCCEE--EEEETTTCCEEECCCCTTCCEEEEEEE
T ss_pred CCCEEEEEEECCCCCC-CcccEEEEEEEeCCCCCcEEe--EEcCCCcCEEEEcCCCCCCEEEEEEEE
Confidence 4445677776644453 5678888888754211 0000 0111223457884 8999999999953
No 15
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=25.97 E-value=43 Score=30.87 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=17.3
Q ss_pred CCCCeEEEEEEeeccceecCCceEEeecC
Q psy8411 67 KDKDLVIQFTVKHEQNIDCGGGYVKVFDC 95 (385)
Q Consensus 67 ~~k~LVvQYeVk~q~~l~CGGaYiKLl~~ 95 (385)
.+.+|+|||.+ |||||+++=+
T Consensus 234 ~~~Pl~l~~~i--------~~g~~~f~lA 254 (265)
T 3p91_A 234 GQAPLIMEFKG--------EACVLKFYLA 254 (265)
T ss_dssp SSSCEEEEEEE--------TTEEEEEEEC
T ss_pred CCccEEEEEEE--------CCEEEEEEEc
Confidence 36899999998 5789998754
No 16
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=24.56 E-value=16 Score=34.35 Aligned_cols=8 Identities=25% Similarity=0.085 Sum_probs=4.0
Q ss_pred cceeeeeC
Q psy8411 150 HLYTLIVK 157 (385)
Q Consensus 150 HlYTLii~ 157 (385)
+|-+|.+.
T Consensus 188 ~L~~L~L~ 195 (386)
T 2ca6_A 188 LLHTVKMV 195 (386)
T ss_dssp TCCEEECC
T ss_pred CcCEEECc
Confidence 44455554
No 17
>3am2_A Heat-labIle enterotoxin B chain; pore forming toxins; 2.51A {Clostridium perfringens} PDB: 2xh6_A* 2yhj_A
Probab=21.96 E-value=89 Score=29.17 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=17.9
Q ss_pred CceEEeecCCCCCCCccCCCCceEEec
Q psy8411 87 GGYVKVFDCSLEQTNMHGESPYLIMFG 113 (385)
Q Consensus 87 GaYiKLl~~~~d~~~f~~~tpY~IMFG 113 (385)
|.|+-++.++ ..+++.-||+|+|-
T Consensus 294 gqyvlvmkan---ssysgnypysilfq 317 (328)
T 3am2_A 294 GQYVLVMKAN---SSYSGNYPYSILFQ 317 (328)
T ss_dssp EEEEEEEEEC---SCCSSCBCCEEEEE
T ss_pred CcEEEEEecc---CcccCCCchHHHHH
Confidence 6677666654 34788899999995
No 18
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}
Probab=21.60 E-value=83 Score=28.64 Aligned_cols=109 Identities=9% Similarity=0.139 Sum_probs=62.9
Q ss_pred ccceeeeccCccccCC-CCCeEEEEEEeeccceecCCceEEeecCCCCCCCccCCCCceEEecCCCcCCCCceEEEEEee
Q psy8411 52 ARFYALSKKFTPFSNK-DKDLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFNY 130 (385)
Q Consensus 52 a~~yaIs~~l~p~~~~-~k~LVvQYeVk~q~~l~CGGaYiKLl~~~~d~~~f~~~tpY~IMFGPD~CG~~~~kvh~I~~~ 130 (385)
...--||..|..+.+- .-+++|-| |... .+..-||+-+ +.+.++ -|--||=. +.++-|-+|-
T Consensus 24 ~~~~d~s~~l~~lk~L~~gTI~v~f--ks~~-----~~~q~LfSIs-N~k~~n---~yf~lyi~------~g~lg~e~R~ 86 (191)
T 2v73_A 24 EERVNITGDLEKFSSLEEGTIVTRF--NMND-----TSIQSLIGLS-DGNKAN---NYFSLYVS------GGKVGYELRR 86 (191)
T ss_dssp GGCEECGGGGGGTTTCSSEEEEEEE--EECC-----CSCEEEEEEE-CTTCSS---CEEEEEEC------SSEEEEEEEE
T ss_pred CcccchhhhhHHhcCcCCcEEEEEE--ecCC-----CcceEEEEcc-CCCCcc---ceEEEEEe------CCEEEEEEec
Confidence 3334667777444443 23455444 4442 3444788742 223332 36666622 2366666676
Q ss_pred CCc--cccccCCCCCCCCCcccceeeeeCCCCceEEEECCeeecCCCCC
Q psy8411 131 KGK--NLLINKDIRCKDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLE 177 (385)
Q Consensus 131 k~~--~~~~~~~~~~~~d~~tHlYTLii~pdntyeI~ID~~~~~~G~l~ 177 (385)
.+. +|....+.....+...|--|+.+..+.+|.|++||+.|.+..+.
T Consensus 87 ~~~~~~~~~~~~a~v~~~~~wntvaf~~d~~~~~~ly~NG~~V~t~~~~ 135 (191)
T 2v73_A 87 QEGNGDFNVHHSADVTFNRGINTLALKIEKGIGAKIFLNGSLVKTVSDP 135 (191)
T ss_dssp CTTSSCEEEEEEEECCCCSSCEEEEEEEETTTEEEEEETTEEEEEEECT
T ss_pred CCCceeeeeecccceecCCceEEEEEEEcCCccEEEEECCEEEEEEecc
Confidence 433 34433344444444667779999888899999999999887554
Done!