RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8411
(385 letters)
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 353 bits (908), Expect = e-121
Identities = 216/341 (63%), Positives = 249/341 (73%), Gaps = 31/341 (9%)
Query: 10 NAWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDK 69
+AW WV S+H +FGKFVLS+GKFY D EKDKG+QTSQDARFYALS KF PFSNK +
Sbjct: 17 DAWTNRWVESKH-KSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQ 75
Query: 70 DLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFN 129
LV+QFTVKHEQNIDCGGGYVK+F L+Q +MHG+S Y IMFGPDICGPGTKKVHVIFN
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFN 135
Query: 130 YKGKNLLINKDIRCKDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWDFLPPKKIK 189
YKGKN+LINKDIR KDD FTHLYTLIV+PDNTY+V IDN V++G+LEDDWDFLPPKKIK
Sbjct: 136 YKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIK 195
Query: 190 DPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNP 249
DP+A KPEDWD+R I DP D+KPEDW D
Sbjct: 196 DPDAAKPEDWDERAKIDDPTDSKPEDW------------------------------DKG 225
Query: 250 EYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDN 309
G W P+QI+NPDYKG W+HPEIDNPEYSPD +Y +G DLWQVKSGTIFDN
Sbjct: 226 GSGGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDN 285
Query: 310 VLITDDIATAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEE 350
LIT+D A A+++ + W EK+MK+KQDEE+R E
Sbjct: 286 FLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLE 326
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus
familiaris} SCOP: b.29.1.12 b.104.1.1
Length = 424
Score = 322 bits (827), Expect = e-108
Identities = 132/392 (33%), Positives = 190/392 (48%), Gaps = 63/392 (16%)
Query: 9 QNAWEKEWVYSQHPGKEF-GKFVLSAGKFYNDAEK------DKGIQTSQDARFYALSKKF 61
W+ S+ + + GK+ D K DKG+ A+ +A+S K
Sbjct: 33 DRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKL 92
Query: 62 T-PFSNKDKDLVIQFTVKHEQNIDCGGGYVKVFDCS--LEQTNMHGESPYLIMFGPDICG 118
PF K L++Q+ V + I+CGG YVK+ + L H ++PY IMFGPD CG
Sbjct: 93 NKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG 152
Query: 119 PGTKKVHVIFNYKGKNLLINKDIRCK----------DDVFTHLYTLIVKPDNTYDVLIDN 168
K+H IF +K + ++ K D THLYTLI+ PDN++++L+D
Sbjct: 153 E-DYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQ 211
Query: 169 ESVQNGNLEDDWD--FLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDW--EKPEHIPN 224
V +GNL +D P ++I+DPE +KPEDWD+RP I DP+ KP+DW + P IP+
Sbjct: 212 SIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPD 271
Query: 225 PDAV-------------------KPADWDDEMDGEWEAP-------------------MI 246
+A KP DWD++MDGEWEAP MI
Sbjct: 272 EEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMI 331
Query: 247 DNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTI 306
DNP YKG W P I+NP+Y+G+W +I NP++ D E + IG +LW + S
Sbjct: 332 DNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIF 391
Query: 307 FDNVLITDDIATAKKYAEDIWKPAFEGEKKMK 338
FDN ++ D +A D W + +
Sbjct: 392 FDNFIVCGDRRVVDDWANDGWGLKKAADGAAE 423
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
carboh binding, peptide binding, multi-compartmental,
chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
3o0v_A* 3o0x_A*
Length = 265
Score = 215 bits (549), Expect = 2e-68
Identities = 142/242 (58%), Positives = 166/242 (68%), Gaps = 14/242 (5%)
Query: 10 NAWEKEWVYSQHPGKEFGKFVLSAGKFYNDAEKDKGIQTSQDARFYALSKKFTPFSNKDK 69
+ W W+ S+H +FGKFVLS+GKFY D EKDKG+QTSQDARFYALS F PFSNK +
Sbjct: 22 DGWTSRWIESKH-KSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQ 80
Query: 70 DLVIQFTVKHEQNIDCGGGYVKVFDCSLEQTNMHGESPYLIMFGPDICGPGTKKVHVIFN 129
LV+QFTVKHEQNIDCGGGYVK+F SL+QT+MHG+S Y IMFGPDICGPGTKKVHVIFN
Sbjct: 81 TLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFN 140
Query: 130 YKGKNLLINKDIRCKDDVFTHLYTLIVKPDNTYDVLIDNESVQNGNLEDDWDFLPPKKIK 189
YKGKN+LINKDIRCKDD FTHLYTLIV+PDNTY+V IDN V++G+LEDDWDFLP
Sbjct: 141 YKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPGSGDP 200
Query: 190 DPEAKKP------EDWDDRPTIADPN------DTKPEDWEKPEHIPNPDAV-KPADWDDE 236
A + W + N + E++ A + D DE
Sbjct: 201 SIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDE 260
Query: 237 MD 238
Sbjct: 261 EQ 262
Score = 80.2 bits (197), Expect = 3e-17
Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 202 RPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNPEYKGVWAPKQIE 261
P I P K + DDE + + + Y+ Q+E
Sbjct: 124 GPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVE 183
Query: 262 NPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDIATAKK 321
+ + W D S DP +Y +G DLWQVKSGTIFDN LIT+D A A++
Sbjct: 184 SGSLEDDW-----DFLPGSGDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEE 238
Query: 322 YAEDIWKPAFEGEKKMKEKQDEEERK 347
+ + W EK+MK+KQDEE+R
Sbjct: 239 FGNETWGVTKAAEKQMKDKQDEEQRL 264
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP:
b.104.1.1 PDB: 1k9c_A 1k91_A
Length = 101
Score = 139 bits (351), Expect = 5e-41
Identities = 75/100 (75%), Positives = 86/100 (86%)
Query: 186 KKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPM 245
KKIKDP+A KPEDWD+R I DP D+KPEDW+KPEHIP+PDA KP DWD+EMDGEWE P+
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPV 61
Query: 246 IDNPEYKGVWAPKQIENPDYKGVWVHPEIDNPEYSPDPEL 285
I NPEYKG W P+QI+NPDYKG W+HPEIDNPEYSPD +
Sbjct: 62 IQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANI 101
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum,
glycoprotein isomerase, rotamase, chaperone, lectin,
membrane; HET: MES; 1.70A {Canis lupus familiaris}
Length = 38
Score = 58.5 bits (142), Expect = 8e-12
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 217 EKPEHIPNPDAVKPADWDDEMDGEWEAPMIDNP 249
++P+ IP+P+A KP DW+++MDGEWEAP I NP
Sbjct: 5 DEPKFIPDPNAEKPDDWNEDMDGEWEAPRISNP 37
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 320 KKYAEDIWKP-AFEGEK-KMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEE 377
KKY++ I P K + E+ EEE A+E + ++E+E+++ T K E+
Sbjct: 201 KKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Query: 378 HEHDHDEL 385
D + +
Sbjct: 261 TVWDWELM 268
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.8 bits (87), Expect = 0.002
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 323 AEDI--WKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEH 380
E I W+ E K+++E + +E ++K K + ++ ++ + E K + +
Sbjct: 84 PESIRKWRE--EQRKRLQELDAASKVMEQE--WREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 381 DHDE 384
D+
Sbjct: 140 IADK 143
Score = 32.8 bits (74), Expect = 0.100
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 316 IATAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKD 359
AKK E+ W + + + EK R A++A + D
Sbjct: 113 REKAKKDLEE-W---NQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 28.2 bits (62), Expect = 3.5
Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 319 AKKYAEDIWKPAFEGEKKMKE-----KQDEEE--RKAEEAAAKDKKKDEDDDED---EDE 368
++ + + + + +E K+D EE ++ E K+K + D+ + +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Query: 369 EET 371
+
Sbjct: 151 ADI 153
Score = 27.4 bits (60), Expect = 7.1
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 341 QDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDEL 385
Q + + E+ K +++ ++ D + E E +L
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL 120
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 33.8 bits (78), Expect = 0.071
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 342 DEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEE 377
EE K K K +E+ E+E+ EET K EE
Sbjct: 229 PVEEIKKLIEKVKKKLNEENKKEEENREETKEKQEE 264
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 33.5 bits (77), Expect = 0.086
Identities = 5/51 (9%), Positives = 19/51 (37%)
Query: 334 EKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDE 384
+ + + + A+ + +DD++++D + +E+
Sbjct: 224 TNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATN 274
Score = 33.1 bits (76), Expect = 0.13
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 332 EGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEE 377
E K + + ++A + A K+ D+D+DED+ + + E
Sbjct: 223 ETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDEN 268
Score = 30.0 bits (68), Expect = 1.2
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 338 KEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDE 384
+ E A++ D +DEDD ++ + +
Sbjct: 233 GDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATT 279
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.12
Identities = 39/244 (15%), Positives = 70/244 (28%), Gaps = 92/244 (37%)
Query: 46 IQTSQD-ARFYALSKK-----F---------TPFSNKDKDLVIQFTVKHEQNIDCGGGY- 89
I + F+ +K F P ++ ++ E +++ G
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL-------EDSLENNEGVP 335
Query: 90 ---VKVFDCSLEQ-------TNMHGESPYLIMFGPDICGPGTKKVHV-IFN--------- 129
+ + + + EQ TN H P K+V + + N
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHL--------------PAGKQVEISLVNGAKNLVVSG 381
Query: 130 -----YKGKNLLINKDIRCKDD-------------VFTHLYTLIVKPDNTYDVLIDNESV 171
Y G NL + K + F++ + + P ++ +L+ +
Sbjct: 382 PPQSLY-GLNLTLRK-AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS-HLLVPASDL 438
Query: 172 QNGNLEDDWDFLPPKKIKDPEAKKPEDWDD-R-------PTIADPNDTKPEDWEK----- 218
N +L + K I+ P D D R I D P WE
Sbjct: 439 INKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 219 PEHI 222
HI
Sbjct: 498 ATHI 501
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 32.9 bits (75), Expect = 0.19
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 13/80 (16%)
Query: 181 DFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGE 240
++P P+D DR P P D P + + G
Sbjct: 346 SYMPKDNRSPVPVVTPKDPIDREIEFQP-SRGPYD---------PRWLLAGRPHPTLKGS 395
Query: 241 WEAPMIDNP---EYKGVWAP 257
W++ D E WA
Sbjct: 396 WQSGFFDQGSFKEIMVPWAQ 415
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 30.4 bits (69), Expect = 0.42
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 328 KPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEE 369
E +K K + ER+ + A + D E+E+EE
Sbjct: 94 HAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 31.4 bits (70), Expect = 0.47
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 316 IATAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEE 370
I + E++ + + +++ +E+ A D +E DD+D+D+E+
Sbjct: 285 IDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDED 339
Score = 30.2 bits (67), Expect = 1.2
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 332 EGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEE 377
E + ++ EE ++ + D D D+ +E + +E
Sbjct: 293 EELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDE 338
Score = 29.0 bits (64), Expect = 2.7
Identities = 8/55 (14%), Positives = 26/55 (47%)
Query: 316 IATAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEE 370
+A+ E + + E + ++ +++ + A+ D D+ +E +D+++
Sbjct: 281 LASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDD 335
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 30.8 bits (70), Expect = 0.50
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 334 EKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHE 379
E+K E Q EE ++ + + E E D + E +
Sbjct: 5 EQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQ 50
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum
calidifontis}
Length = 285
Score = 30.8 bits (70), Expect = 0.66
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 6/83 (7%)
Query: 304 GTIF---DNVL-ITDDIATAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKD 359
G ++ D+ + K A +I + + ++ + + + K +
Sbjct: 197 GILYQYSDDYSDENVERPETKSIANEIGRYLLKIKEHV-GDAIAPFERLIKYLIG-KALE 254
Query: 360 EDDDEDEDEEETTGKAEEHEHDH 382
E H H H
Sbjct: 255 GTLTVSRTIAENLYFQSHHHHHH 277
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 29.9 bits (66), Expect = 0.75
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 332 EGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDEL 385
+ ++ +EK E E K EE +D+ +DED+D+D+D++E + EE ++L
Sbjct: 27 DDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDL 80
Score = 28.3 bits (62), Expect = 2.9
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 333 GEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDEL 385
+ ++ E KA E K+++ ++D++++++E+ +E E + +E+
Sbjct: 21 VAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEV 73
Score = 27.9 bits (61), Expect = 3.0
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 332 EGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHD 381
E E+ +E+ + EE ++ +DED+DEDED+++ + EE E +
Sbjct: 23 AAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 26.8 bits (58), Expect = 8.0
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 316 IATAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEE 370
+ +D + E + +EK++E + E+ + D+DD+++E+EEE
Sbjct: 18 VPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 26.8 bits (58), Expect = 9.3
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 332 EGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHD 383
+ + + EE+ AE +++ DED+DEDEDE++ E+ E + +
Sbjct: 21 VAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 30.3 bits (69), Expect = 1.1
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 335 KKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEE 370
K+ K K+D ++ AE+ ++KK+ + E E ++
Sbjct: 65 KRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium
difficile}
Length = 189
Score = 29.1 bits (65), Expect = 1.8
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 335 KKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETT---GKAEEHEHDHD 383
KKM EE+ EE D E ++ D+ + E K + +D
Sbjct: 142 KKMYRFNGEEQDGFEE----DANFMEYEEIDKIKSEALEEFAKRRNRVNKND 189
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 29.5 bits (66), Expect = 1.9
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 337 MKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDEL 385
E+ + + D+D+DEDE++ + +++ D +
Sbjct: 60 NAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELA 108
Score = 27.6 bits (61), Expect = 8.7
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 314 DDIATAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTG 373
+ + + D+ F ++ E + +D DED+DE++ ++++
Sbjct: 40 NRVEAEEARLSDLIT-GFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSAD 98
Query: 374 KAEE 377
Sbjct: 99 DDNS 102
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.7 bits (67), Expect = 2.3
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 334 EKKMKEKQ----DEEERKAEEAAAKDKKKDEDDDEDE---DEEETTGKAEEHEHDHDE 384
E K+ + Q ++ + + + E E + E +EE +
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN 984
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 29.4 bits (66), Expect = 2.4
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 181 DFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPED 215
++P K+ + +D DRP P + + D
Sbjct: 333 SYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYD 367
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 29.4 bits (66), Expect = 2.6
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 184 PPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDWE---KPEHIPNPDAV 228
+ DP A+ R I D T P W+ + D V
Sbjct: 387 TTQTAVDPYARAISVNATRGMIVDLKATDPAGWQGDHEQTPANPVDEV 434
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 28.9 bits (65), Expect = 2.7
Identities = 4/41 (9%), Positives = 16/41 (39%)
Query: 345 ERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDEL 385
E + + + +++ +D D + + + E+ +
Sbjct: 90 EMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVA 130
Score = 27.8 bits (62), Expect = 5.9
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 324 EDIW-KPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDH 382
E W + MK + E D E++ D+ + E E +
Sbjct: 63 EQPWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEK 122
Query: 383 DE 384
+
Sbjct: 123 AK 124
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.5 bits (63), Expect = 3.2
Identities = 0/50 (0%), Positives = 10/50 (20%), Gaps = 4/50 (8%)
Query: 332 EGEKKMKEK--QDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHE 379
+ + ++ + + + + ++
Sbjct: 101 KPSRTSRQVQKRPRSRTLTAVHDKILEDLVFP--TEIVGKRVRYLVGGNK 148
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 28.7 bits (63), Expect = 3.2
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 334 EKKM----KEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHE 379
E+K+ E+ E + ++ A E + ++ + E + E
Sbjct: 353 ERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEE 402
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 28.3 bits (63), Expect = 3.4
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 326 IWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDED 367
K E+K E+++ E E+ A + + E + ++++
Sbjct: 199 YHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 28.5 bits (64), Expect = 3.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 337 MKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEE 370
M+E DEEE EE A + E +E+++++E
Sbjct: 343 MEELTDEEEEDEEEEAESQSPEPETSEEEKEDKE 376
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 28.2 bits (63), Expect = 3.7
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 336 KMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDE 384
++ ++ E E +A + A + ++ E E EE + + E
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASE 223
Score = 28.2 bits (63), Expect = 4.7
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 338 KEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDE 384
+E + E + + E+ E E + + + + E D
Sbjct: 179 EELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDN 225
Score = 27.8 bits (62), Expect = 5.0
Identities = 6/50 (12%), Positives = 17/50 (34%)
Query: 335 KKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDE 384
+ E+ + E + A+ A + ++ + E E ++
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASED 224
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 28.7 bits (65), Expect = 3.9
Identities = 5/36 (13%), Positives = 19/36 (52%)
Query: 335 KKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEE 370
K+ K+ + +E A+ + + +++ +E +++
Sbjct: 63 KRRKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 28.6 bits (65), Expect = 3.9
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 335 KKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEE 370
K +E +D E + K++ +++ + EEE
Sbjct: 62 KLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 27.7 bits (61), Expect = 4.2
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 318 TAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEE 377
T K Y+ I E +K + ++ E A EAA ++ K+ +DE + + A+
Sbjct: 77 TKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKS 136
Query: 378 HE 379
+
Sbjct: 137 QK 138
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 28.1 bits (63), Expect = 4.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 332 EGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDED 367
E E ++ R+ E AK+ K+ED+ +D++
Sbjct: 218 ELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDN 253
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat
fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Length = 177
Score = 27.6 bits (62), Expect = 4.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 356 KKKDEDDDEDEDEEETTGKAEEHEHDH 382
K++++DD DE E E H H H
Sbjct: 151 YKEEQEDDWDEAENLYFQSLEHHHHHH 177
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 28.0 bits (63), Expect = 5.1
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 340 KQDEEERKA-----EEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDH 382
+ +RK +E K + + D+ E +E+ E H H H
Sbjct: 389 RWAILKRKVLDLLLQEVKVKVVEPKGEGDDSEGKED---NLEHHHHHH 433
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 27.4 bits (61), Expect = 6.3
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 337 MKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHEHDHDE 384
M++ + + +A + ++ E++ + EEE+ G E +
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEA 48
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Length = 714
Score = 28.1 bits (63), Expect = 6.4
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 2/40 (5%)
Query: 174 GNLEDDWDFLPPKKIKDPEAKKPEDW--DDRPTIADPNDT 211
+ DD + DP P+D D
Sbjct: 113 DSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDA 152
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 26.5 bits (58), Expect = 7.0
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 319 AKKYAEDIWKPAFE-GEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDE 366
KK + +W+ A + KK ++ ++E K E+ AAK +KD + +
Sbjct: 45 TKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVK 93
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 7.1
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 318 TAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDE 368
AK+ E++ K E E++ + + +E++ E + K++ ++ + D+
Sbjct: 390 EAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase;
HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Length = 1014
Score = 27.9 bits (62), Expect = 7.3
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 2/40 (5%)
Query: 174 GNLEDDWDFLPPKKIKDPEAKKPEDW--DDRPTIADPNDT 211
+ DD + DP P+D D
Sbjct: 420 DSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDA 459
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 27.4 bits (60), Expect = 7.8
Identities = 13/79 (16%), Positives = 28/79 (35%)
Query: 307 FDNVLITDDIATAKKYAEDIWKPAFEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDE 366
F L+ + T Y K+ ++ D + + A + K+ ++ +
Sbjct: 110 FHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISK 169
Query: 367 DEEETTGKAEEHEHDHDEL 385
EEE + E + +L
Sbjct: 170 AEEEFQKAQKVFEEFNVDL 188
>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase,
cell WALL, peptidoglycan-anchor, secreted; 2.10A
{Streptococcus agalactiae COH1} PDB: 3fax_A*
Length = 877
Score = 27.9 bits (62), Expect = 8.0
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 13/60 (21%)
Query: 182 FLPPKKIKDPEAKKPEDWDD----------RPTIADPNDTKPEDWE---KPEHIPNPDAV 228
KI DP AK +WD + +P+ P++ DAV
Sbjct: 210 GKDKVKILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPSQLGPQNLSFAKIANFKGRQDAV 269
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 27.2 bits (60), Expect = 8.5
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 331 FEGEKKMKEKQDEEERKAEEAAAKDKKKDEDDDEDEDEEETTGKAEEHE 379
F + + E+Q EE EEA ++ K++ +++ E E A+ E
Sbjct: 203 FYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENADNVE 251
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 27.7 bits (62), Expect = 8.6
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 177 EDDWDFLPPKKIKDPEAKKPEDWD-DRPTIADPNDTKPEDWEK 218
+ ++L +K +D ++P+ D D T+ P +
Sbjct: 29 HETLEWLKEEKRRDEHRRRPDHPDFDASTLYVP----EDFLNS 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.135 0.423
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,625,314
Number of extensions: 424806
Number of successful extensions: 1496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1320
Number of HSP's successfully gapped: 160
Length of query: 385
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 290
Effective length of database: 4,049,298
Effective search space: 1174296420
Effective search space used: 1174296420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.2 bits)