RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8411
         (385 letters)



>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 249

 Score =  219 bits (559), Expect = 2e-70
 Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 22/229 (9%)

Query: 8   YQNAWEKEWVYSQHPGKEF-GKFVLSAGKFYNDAEK------DKGIQTSQDARFYALSKK 60
           +       W+ S+    +   +     GK+  D  K      DKG+     A+ +A+S K
Sbjct: 16  FDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAK 75

Query: 61  F-TPFSNKDKDLVIQFTVKHEQNIDCGGGYVKVFDCS--LEQTNMHGESPYLIMFGPDIC 117
              PF    K L++Q+ V  +  I+CGG YVK+   +  L     H ++PY IMFGPD C
Sbjct: 76  LNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKC 135

Query: 118 GPGTKKVHVIFNYKGKNLLINKDIRCK----------DDVFTHLYTLIVKPDNTYDVLID 167
           G    K+H IF +K     + ++   K           D  THLYTLI+ PDN++++L+D
Sbjct: 136 GE-DYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVD 194

Query: 168 NESVQNGNLEDDWDFLPPKKIKDPEAKKPEDWDDRPTIADPNDTKPEDW 216
              V +GNLE  +   P   I         D      I   +    +DW
Sbjct: 195 QSIVNSGNLEP-FKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDW 242


>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris)
           [TaxId: 9615]}
          Length = 142

 Score =  114 bits (286), Expect = 2e-31
 Identities = 59/141 (41%), Positives = 80/141 (56%), Gaps = 40/141 (28%)

Query: 182 FLPPKKIKDPEAKKPEDWDDRPTIADPN-------------------DTKPEDW--EKPE 220
             P ++I+DPE +KPEDWD+RP I DP+                    TKP+ W  ++PE
Sbjct: 2   VNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPE 61

Query: 221 HIPNPDAVKPADWDDEMDGEWEA-------------------PMIDNPEYKGVWAPKQIE 261
           ++P+PDA KP DWD++MDGEWEA                   PMIDNP YKG W P  I+
Sbjct: 62  YVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMID 121

Query: 262 NPDYKGVWVHPEIDNPEYSPD 282
           NP+Y+G+W   +I NP++  D
Sbjct: 122 NPNYQGIWKPRKIPNPDFFED 142



 Score =  110 bits (276), Expect = 7e-30
 Identities = 57/111 (51%), Positives = 74/111 (66%), Gaps = 11/111 (9%)

Query: 178 DDWDFLPPKKIKDPEAKKPEDWDD--RPTIADPNDTKPEDW--EKPEHIPNPDAVKPADW 233
           +DWD  P  KI DP+A KP+DW++     I D   TKP+ W  ++PE++P+PDA KP DW
Sbjct: 17  EDWDERP--KIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDW 74

Query: 234 DDEMDGEWEAPMIDNPEYK-----GVWAPKQIENPDYKGVWVHPEIDNPEY 279
           D++MDGEWEAP I NP+ +     GVW    I+NP+YKG W  P IDNP Y
Sbjct: 75  DEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNY 125


>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 74

 Score =  110 bits (277), Expect = 6e-31
 Identities = 54/73 (73%), Positives = 62/73 (84%)

Query: 186 KKIKDPEAKKPEDWDDRPTIADPNDTKPEDWEKPEHIPNPDAVKPADWDDEMDGEWEAPM 245
           KKIKDP+A KPEDWD+R  I DP D+KPEDW+KPEHIP+PDA KP DWD+EMDGEWE P+
Sbjct: 2   KKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPV 61

Query: 246 IDNPEYKGVWAPK 258
           I NPEYKG W P+
Sbjct: 62  IQNPEYKGEWKPR 74


>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 37

 Score = 65.4 bits (160), Expect = 9e-15
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 218 KPEHIPNPDAVKPADWDDEMDGEWEAPMIDNPEYKG 253
           KPEHIP+PDA KP DWD+EMDGEWE P+I NPEYKG
Sbjct: 2   KPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKG 37


>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 187

 Score = 28.6 bits (63), Expect = 0.83
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 255 WAPKQIENPDYKGVWVHPEIDNPE-YSPDPELYYKPEICTIGFDLWQ 300
           W+  Q+E       W+    D+   +  + E  ++    ++GF+ WQ
Sbjct: 133 WSKNQLEQELADNSWLTIPADHALLFDINHEDRWQQASRSLGFEAWQ 179


>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 416

 Score = 26.9 bits (58), Expect = 4.5
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 184 PPKKIKDPEAKKPEDWDDRPTIA-DPNDTKPED------------WEKPEHIPNPDA-VK 229
           P    KDP   K +D  D+   + DP      +            WE   HI +    VK
Sbjct: 25  PEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVK 84

Query: 230 PAD-WDDEMDGEWEAPMIDNPEYKGVWAPKQIENP 263
           P    D E      +  +   + +    P  +   
Sbjct: 85  PGTALDAEGAARGTS--VYLVDKRIDMLPMLLGTD 117


>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 445

 Score = 26.8 bits (58), Expect = 5.4
 Identities = 7/69 (10%), Positives = 19/69 (27%)

Query: 257 PKQIENPDYKGVWVHPEIDNPEYSPDPELYYKPEICTIGFDLWQVKSGTIFDNVLITDDI 316
            K +    ++ V +   ++  E   D +             +  + S T      + D +
Sbjct: 154 FKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRL 213

Query: 317 ATAKKYAED 325
                   +
Sbjct: 214 EELAVICAN 222


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,685,747
Number of extensions: 89128
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 34
Length of query: 385
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,213,086
Effective search space: 361499628
Effective search space used: 361499628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.3 bits)