BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8412
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 38.5 bits (88), Expect = 0.046, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFN--IRFTNPLISKVYSTWSFLKLNN 108
AELMAI L L+ E+ + IV+DS+ +L + + + +P++ ++ +
Sbjct: 1063 AELMAILLALQDSKETVN----IVTDSQYALGVISSQPTQSESPIVQQIIEELT----KK 1114
Query: 109 KNVSFMWCPSHCGIRGNEIVDE 130
+ V W P+H GI GNE +D+
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKIDK 1136
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 35.4 bits (80), Expect = 0.41, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 17 FTDGSKTPDSTSCAFSIGD-VVHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVS 75
+TDG K A+ + L PV AE MAI + LE ++ D IV+
Sbjct: 623 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 678
Query: 76 DSKSSLTALFNIRFTNPLISKVYSTWSFLK--LNNKNVSFMWCPSHCGIRGNEIVDEAAR 133
DS NI L W ++ + V F W P H GI GN++ DEAA+
Sbjct: 679 DSYYCWK---NITEGLGLEGPQNPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLADEAAK 735
>sp|Q891T0|SYT_CLOTE Threonine--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=thrS PE=3 SV=1
Length = 639
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 89 FTNPLISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASIDPYKLCTPED 148
FT ++ K+ + + N + P I+ +V +A+ +PYK+ ED
Sbjct: 112 FTPEMLEKIEKEMAKIVKENLEIERFELPREEAIK---LVKDAS------EPYKVELIED 162
Query: 149 L--KPFISFLIKSEWQN--QWNHIPNTNKLKAIK---PTIEHWATSNQNKRLQEVILT 199
L ISF + ++ + H+P+T K+KAIK +W +NK LQ + T
Sbjct: 163 LPEGEVISFYKQGDFVDLCAGPHLPSTGKIKAIKLLSVAGAYWRGDEKNKMLQRIYGT 220
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 35.0 bits (79), Expect = 0.58, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 40 TLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFN--IRFTNPLISKV 97
TL N N A+L AI + LE P+ + IV+DS+ ++ L + +PL+ ++
Sbjct: 1084 TLENTTNQ--QAKLTAIKMALED--SGPNVN--IVTDSQYAMGILTAQPTQSDSPLVEQI 1137
Query: 98 YSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDE 130
+ L + + + W P+H GI GNE +D+
Sbjct: 1138 IA----LMIQKQQIYLQWVPAHKGIGGNEEIDK 1166
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 35.0 bits (79), Expect = 0.59, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 17 FTDGSKTPDSTSCAFSIGD-VVHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVS 75
+TDG K A+ + L PV AE MAI + LE ++ D IV+
Sbjct: 624 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 679
Query: 76 DSKSSLTALFNIRFTNPLISKVYSTWSFLK--LNNKNVSFMWCPSHCGIRGNEIVDEAAR 133
DS NI L W ++ + V F W P H GI GN++ DEAA+
Sbjct: 680 DSYYCWK---NITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 35.0 bits (79), Expect = 0.59, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 17 FTDGSKTPDSTSCAFSIGD-VVHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVS 75
+TDG K A+ + L PV AE MAI + LE ++ D IV+
Sbjct: 624 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALE---DTRDKQVNIVT 679
Query: 76 DSKSSLTALFNIRFTNPLISKVYSTWSFLK--LNNKNVSFMWCPSHCGIRGNEIVDEAAR 133
DS NI L W ++ + V F W P H GI GN++ DEAA+
Sbjct: 680 DSYYCWK---NITEGLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 34.7 bits (78), Expect = 0.80, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFN--IRFTNPLISKVYSTWSFLKLNN 108
AELMA+ + L+ E + IV+DS+ L + + + +P++ ++ +
Sbjct: 1065 AELMAVLIALQDSKEQVN----IVTDSQYVLGIISSQPTQSDSPIVQQIIEELT----KK 1116
Query: 109 KNVSFMWCPSHCGIRGNEIVDE 130
+ V W P+H GI GNE +D+
Sbjct: 1117 ERVYLTWVPAHKGIGGNEKIDK 1138
>sp|Q5QZL3|RNH_IDILO Ribonuclease H OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=rnhA PE=3 SV=1
Length = 157
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 105 KLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASIDP 140
++N V + W H G + NE DE AR+AA+ +P
Sbjct: 112 EVNRHKVEWKWIKGHSGHKQNERCDELARDAATREP 147
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFN--IRFTNPLISKVYSTWSFLKLNN 108
AELMAI + LE P+ + IV+DS+ ++ L + +PLI ++ + L +
Sbjct: 1091 AELMAIKMALED--SGPNVN--IVTDSQYAMGILTAQPTQSDSPLIEQIIA----LMVQK 1142
Query: 109 KNVSFMWCPSHCGIRGNEIVDE 130
+ W P+ GI GNE +D+
Sbjct: 1143 HQIYLQWVPADKGIGGNEEIDK 1164
>sp|Q83GM3|RNH_TROWT Ribonuclease H OS=Tropheryma whipplei (strain Twist) GN=rnhA PE=3
SV=1
Length = 161
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 12 NHTICFTDGSK--TPDSTSCAFSIGDVVHSTLLNPVNSIFSAELMAIFLCLEAILESPDH 69
N I TDGS P + A+ + + + + + AEL A+ L A + D
Sbjct: 4 NEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRHT-DR 62
Query: 70 HFLIVSDSKSSLTALFNIRFTNPLISKVYSTWSFLK---------------------LNN 108
LI+SDSK + N L VYS W K + N
Sbjct: 63 PILILSDSKYVI---------NSLTKWVYS-WKMRKWRKADGKPVLNQEIIQEIDSLMEN 112
Query: 109 KNVSFMWCPSHCGIRGNEIVDEAARNAA 136
+N+ W +H G NE D AR AA
Sbjct: 113 RNIRMSWVNAHTGHPLNEAADSLARQAA 140
>sp|Q83HK9|RNH_TROW8 Ribonuclease H OS=Tropheryma whipplei (strain TW08/27) GN=rnhA PE=3
SV=1
Length = 161
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 12 NHTICFTDGSK--TPDSTSCAFSIGDVVHSTLLNPVNSIFSAELMAIFLCLEAILESPDH 69
N I TDGS P + A+ + + + + + AEL A+ L A + D
Sbjct: 4 NEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRHT-DR 62
Query: 70 HFLIVSDSKSSLTALFNIRFTNPLISKVYSTWSFLK---------------------LNN 108
LI+SDSK + N L VYS W K + N
Sbjct: 63 PILILSDSKYVI---------NSLTKWVYS-WKMRKWRKADGKPVLNQEIIQEIDSLMEN 112
Query: 109 KNVSFMWCPSHCGIRGNEIVDEAARNAA 136
+N+ W +H G NE D AR AA
Sbjct: 113 RNIRMSWVNAHTGHPLNEAADSLARQAA 140
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 33.5 bits (75), Expect = 1.7, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFNIRFTNPLISKVYSTWSFL--KLNN 108
AE+ A+ L L+A E + I++DS+ + NI P K+ W + +L
Sbjct: 633 AEIQALLLALKAGPEEMN----IITDSQY----MINILSQQP--DKMEGIWQEVLEELEK 682
Query: 109 KNVSFM-WCPSHCGIRGNEIVDEAARNAASID 139
K F+ W P H GI GNE VD+ + I+
Sbjct: 683 KTAIFIDWVPGHKGIPGNEEVDKLCQTMMIIE 714
>sp|Q8CS83|SYV_STAES Valine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=valS PE=3 SV=1
Length = 876
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 149 LKPFISFLIKSEWQNQWNHIPNTNKLKAIKPTIEHWATSNQNKRLQEVILTRLR-IGHTR 207
L PF+ F+ ++ WQ+ +H +KA PT++ N++K+ E ++ ++ + +R
Sbjct: 680 LHPFMPFVTETIWQSLPHH--GETIVKANWPTVDQALIFNESKQTMEQLVEIIKSVRQSR 737
Query: 208 ITHNHLFTKTDPPFCQCGAALSVILNYIVDNFILVHK 244
+ N +K P Q I + ++DN +HK
Sbjct: 738 VEVNTPLSKAIPILIQTKD--EKIKHTLMDNISYLHK 772
>sp|Q5HNN9|SYV_STAEQ Valine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=valS PE=3 SV=1
Length = 876
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 149 LKPFISFLIKSEWQNQWNHIPNTNKLKAIKPTIEHWATSNQNKRLQEVILTRLR-IGHTR 207
L PF+ F+ ++ WQ+ +H +KA PT++ N++K+ E ++ ++ + +R
Sbjct: 680 LHPFMPFVTETIWQSLPHH--GETIVKANWPTVDQALIFNESKQTMEQLVEIIKSVRQSR 737
Query: 208 ITHNHLFTKTDPPFCQCGAALSVILNYIVDNFILVHK 244
+ N +K P Q I + ++DN +HK
Sbjct: 738 VEVNTPLSKAIPILIQTKD--EKIKHTLMDNISYLHK 772
>sp|B4S3D2|SYT_PROA2 Threonine--tRNA ligase OS=Prosthecochloris aestuarii (strain DSM
271 / SK 413) GN=thrS PE=3 SV=1
Length = 657
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 122 IRGNEIVDEAARN---AASIDPYKLCTPED-LK--PFISFLIKSEWQN--QWNHIPNTNK 173
+R E+ +AA + + DPYK+ ED LK P +S + E+ + H+PNT+K
Sbjct: 143 VRREELSRQAAIDFFSSTRKDPYKVEILEDTLKDTPTVSIYHQGEFADLCTGPHLPNTSK 202
Query: 174 LKAIKPT---IEHWATSNQNKRLQEV 196
LKA+K T W + + +Q +
Sbjct: 203 LKAVKLTNISASFWRGDSSRESMQRI 228
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFNIRFTNPLISKVYSTWSFLKLNNKN 110
AE+ A+ L L+A E + I++DS+ + NI P + + +L K
Sbjct: 633 AEIQALLLALKAGSEEMN----IITDSQY----VINIILQQPDMMEGIWQEVLEELEKKT 684
Query: 111 VSFM-WCPSHCGIRGNEIVDEAARNAASID 139
F+ W P H GI GNE VD+ + I+
Sbjct: 685 AIFIDWVPGHKGIPGNEEVDKLCQTMMIIE 714
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,582,971
Number of Sequences: 539616
Number of extensions: 3963408
Number of successful extensions: 8297
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 8293
Number of HSP's gapped (non-prelim): 33
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)