Query psy8412
Match_columns 271
No_of_seqs 204 out of 1453
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:08:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 8E-26 2.7E-30 183.2 12.5 130 9-139 3-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 4.1E-25 1.4E-29 178.3 12.8 127 7-138 6-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.9 7.3E-25 2.5E-29 175.9 10.9 125 11-139 2-145 (146)
4 2kq2_A Ribonuclease H-related 99.9 2.9E-25 9.9E-30 178.7 5.8 127 10-140 3-139 (147)
5 1jl1_A Ribonuclease HI; RNAse 99.9 9.9E-24 3.4E-28 171.1 12.2 126 12-141 3-146 (155)
6 3p1g_A Xenotropic murine leuke 99.9 2E-23 6.8E-28 170.8 13.9 124 13-139 23-157 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.9 8.5E-24 2.9E-28 172.0 10.4 123 12-138 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.9 9.5E-24 3.2E-28 173.1 6.6 127 12-141 7-151 (166)
9 2lsn_A Reverse transcriptase; 99.9 7.1E-22 2.4E-26 161.5 13.1 126 12-138 6-163 (165)
10 3u3g_D Ribonuclease H, RNAse H 99.9 3.4E-21 1.2E-25 152.5 12.3 122 12-138 2-137 (140)
11 3hst_B Protein RV2228C/MT2287; 99.9 3.3E-21 1.1E-25 153.1 11.0 122 13-139 3-134 (141)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 1.1E-20 3.6E-25 182.1 12.8 122 8-136 431-555 (555)
13 2ehg_A Ribonuclease HI; RNAse 99.8 4.1E-20 1.4E-24 148.5 11.8 121 14-139 2-135 (149)
14 2zd1_A Reverse transcriptase/r 99.8 1.1E-20 3.6E-25 182.2 9.5 121 8-135 434-557 (557)
15 1zbf_A Ribonuclease H-related 99.4 2.9E-14 1E-18 113.4 3.3 118 10-130 8-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.2 1.4E-11 4.7E-16 96.5 5.9 75 11-87 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 82.6 0.15 5.2E-06 47.1 -1.5 72 12-87 345-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 51.0 21 0.00073 32.3 5.6 73 11-84 322-403 (428)
19 2fr5_A Cytidine deaminase; tet 42.4 56 0.0019 25.0 5.9 51 26-77 37-91 (146)
20 2akl_A PHNA-like protein PA012 41.6 12 0.00041 28.3 1.9 22 218-239 26-48 (138)
21 2nx8_A TRNA-specific adenosine 38.3 40 0.0014 26.7 4.7 50 26-75 37-90 (179)
22 2z3g_A Blasticidin-S deaminase 35.3 78 0.0027 23.6 5.7 51 26-77 28-80 (130)
23 2b3j_A TRNA adenosine deaminas 34.0 73 0.0025 24.6 5.5 50 26-75 28-81 (159)
24 1wkq_A Guanine deaminase; doma 34.0 52 0.0018 25.7 4.6 51 25-75 32-86 (164)
25 1wwr_A TRNA adenosine deaminas 33.5 54 0.0019 25.8 4.7 50 26-75 44-97 (171)
26 1uwz_A Cytidine deaminase; CDD 33.1 1.2E+02 0.0041 22.7 6.5 51 26-77 25-79 (136)
27 2a8n_A Cytidine and deoxycytid 32.8 47 0.0016 25.1 4.1 50 26-75 25-78 (144)
28 2d30_A Cytidine deaminase; pur 28.1 1.1E+02 0.0039 23.1 5.5 52 26-78 34-89 (141)
29 1z3a_A TRNA-specific adenosine 27.4 63 0.0022 25.2 4.1 50 26-75 30-83 (168)
30 1ea9_C Cyclomaltodextrinase; h 22.6 51 0.0018 31.0 3.2 68 52-124 170-248 (583)
31 1k81_A EIF-2-beta, probable tr 22.0 46 0.0016 19.0 1.7 10 221-230 2-12 (36)
32 3dh1_A TRNA-specific adenosine 21.4 1.2E+02 0.0042 24.1 4.8 39 26-64 47-89 (189)
33 3mpz_A Cytidine deaminase; ssg 21.0 1.5E+02 0.0053 22.7 5.1 51 26-77 47-101 (150)
34 1wzl_A Alpha-amylase II; pullu 21.0 72 0.0025 29.9 3.8 69 52-125 171-250 (585)
35 1j0h_A Neopullulanase; beta-al 20.9 73 0.0025 29.9 3.9 76 51-131 173-259 (588)
36 1ht6_A AMY1, alpha-amylase iso 20.7 72 0.0024 28.3 3.6 72 53-124 20-98 (405)
37 1kn6_A Prohormone convertase 1 20.7 56 0.0019 22.9 2.3 13 124-136 22-34 (90)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.93 E-value=8e-26 Score=183.24 Aligned_cols=130 Identities=18% Similarity=0.243 Sum_probs=100.8
Q ss_pred ccCCcEEEEEcCCCCCCC-----eeEEEEECC---eEEEEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHH
Q psy8412 9 KYANHTICFTDGSKTPDS-----TSCAFSIGD---VVHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSS 80 (271)
Q Consensus 9 ~~~~~~~iytDGS~~~~~-----~G~a~~~~~---~~~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~a 80 (271)
.+++.++||||||+..++ +|+|++..+ ......+++..|++.||+.|++.||+.+...+..+|.|+|||++|
T Consensus 3 ~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~v 82 (154)
T 2qkb_A 3 HMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFT 82 (154)
T ss_dssp EETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHH
T ss_pred CCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHH
Confidence 456789999999987643 688888643 123455666789999999999999999988778999999999999
Q ss_pred HHHHhccc--------c-CCc--c-HHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy8412 81 LTALFNIR--------F-TNP--L-ISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASID 139 (271)
Q Consensus 81 l~~l~~~~--------~-~~~--~-~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~ 139 (271)
++.|+++. . ..+ . ...++..+..+.. +..|.|.|||||+|++||+.||+|||+|+..+
T Consensus 83 i~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 83 INGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred HhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 99998742 1 111 1 1334444444433 46799999999999999999999999999764
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.92 E-value=4.1e-25 Score=178.34 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=95.7
Q ss_pred hhccCCcEEEEEcCCCCCC--CeeEEEEECC-eEEEEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHH
Q psy8412 7 NNKYANHTICFTDGSKTPD--STSCAFSIGD-VVHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTA 83 (271)
Q Consensus 7 ~~~~~~~~~iytDGS~~~~--~~G~a~~~~~-~~~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~ 83 (271)
.+++++.++||||||+..+ ..|+|++..+ ......+ ..+|++.||+.|++.||+.+ ..+|.|+|||++|++.
T Consensus 6 ~~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~ 80 (150)
T 3qio_A 6 KEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGI 80 (150)
T ss_dssp SSCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHH
T ss_pred cCCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHH
Confidence 4567788999999998764 3678877543 2223333 57899999999999999985 4899999999999999
Q ss_pred Hhcccc---CCcc---------HHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcC
Q psy8412 84 LFNIRF---TNPL---------ISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASI 138 (271)
Q Consensus 84 l~~~~~---~~~~---------~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~ 138 (271)
|+++.. ..++ ...++..+..+......|.|.|||||+|++|||.||+||++|++.
T Consensus 81 i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 81 ITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 987621 1111 122333333333568899999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.92 E-value=7.3e-25 Score=175.92 Aligned_cols=125 Identities=23% Similarity=0.198 Sum_probs=91.6
Q ss_pred CCcEEEEEcCCCCCCC--eeEEEEE--CCeEE--EEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHH
Q psy8412 11 ANHTICFTDGSKTPDS--TSCAFSI--GDVVH--STLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTAL 84 (271)
Q Consensus 11 ~~~~~iytDGS~~~~~--~G~a~~~--~~~~~--~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l 84 (271)
.+.++||||||+..++ .|+|++. .+... ...+ +.+|++.||+.|++.||+.+.+ ..+|.|+|||++|++.|
T Consensus 2 ~~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i 78 (146)
T 3h08_A 2 EKTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAM 78 (146)
T ss_dssp CCEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHH
T ss_pred CceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHH
Confidence 4579999999988753 6888764 33222 2222 3688999999999999999976 68999999999999999
Q ss_pred hc-ccc---------CC--cc-HHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy8412 85 FN-IRF---------TN--PL-ISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASID 139 (271)
Q Consensus 85 ~~-~~~---------~~--~~-~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~ 139 (271)
++ +.. .. +. ...++..+..+.. ...|.|.|||||+|+++||.||+|||+|+...
T Consensus 79 ~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 79 NEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp HSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 88 210 11 11 1334444333333 35799999999999999999999999998753
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.91 E-value=2.9e-25 Score=178.66 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=95.9
Q ss_pred cCCcEEEEEcCCCCCCCeeEEEEE--CCeEE--EE-ec--CC--CCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHH
Q psy8412 10 YANHTICFTDGSKTPDSTSCAFSI--GDVVH--ST-LL--NP--VNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSS 80 (271)
Q Consensus 10 ~~~~~~iytDGS~~~~~~G~a~~~--~~~~~--~~-~l--~~--~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~a 80 (271)
+++.+.||||||+.++.+|+|++. .+... .. .. +. ..||+.||+.|++.||+.+.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 456799999999998768888764 34322 22 22 22 368999999999999999877666 99999999998
Q ss_pred HHHHhccccCCc-cHHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcCCC
Q psy8412 81 LTALFNIRFTNP-LISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASIDP 140 (271)
Q Consensus 81 l~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~~ 140 (271)
.+.+.+.+..+. ....+...+..+.. .|.|.|||||+|++|||.||+|||+|+....
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 888877655432 22333333222322 8999999999999999999999999998764
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.90 E-value=9.9e-24 Score=171.12 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=94.0
Q ss_pred CcEEEEEcCCCCCC--CeeEEEEE--CCeEE--EEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHHh
Q psy8412 12 NHTICFTDGSKTPD--STSCAFSI--GDVVH--STLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTALF 85 (271)
Q Consensus 12 ~~~~iytDGS~~~~--~~G~a~~~--~~~~~--~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l~ 85 (271)
..+.||||||+..+ .+|+|++. .+... ...+ +..|++.||+.|++.||+.+.. ..+|.|+|||++|++.|+
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHH
Confidence 46899999999864 36888764 33221 2223 3578999999999999999976 489999999999999999
Q ss_pred ccc---------cCC--ccH-HHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcCCCC
Q psy8412 86 NIR---------FTN--PLI-SKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASIDPY 141 (271)
Q Consensus 86 ~~~---------~~~--~~~-~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~~~ 141 (271)
++. ... +.. ..++..+..+.. ...|.|.|||||+|++||+.||+|||+|+..+..
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 732 111 111 233443333433 4689999999999999999999999999987643
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.90 E-value=2e-23 Score=170.83 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=91.1
Q ss_pred cEEEEEcCCCCC--CCeeEEEE--ECCe-EEEEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHHhcc
Q psy8412 13 HTICFTDGSKTP--DSTSCAFS--IGDV-VHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFNI 87 (271)
Q Consensus 13 ~~~iytDGS~~~--~~~G~a~~--~~~~-~~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l~~~ 87 (271)
.+.||||||+.. +..|+|++ ..+. .....++..+|++.||+.|++.||+.+ . ..+|.|+|||++|++.+-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~--~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E--GKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B--TSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c--CceEEEEEchHHHHhhhhcc
Confidence 499999999974 44677754 3332 223345678899999999999999998 3 68999999999999998321
Q ss_pred ccCCcc-HHHHHHHHHHHHhCCCceEEEEecCCCC-----CccchHHHHHHHHhhcCC
Q psy8412 88 RFTNPL-ISKVYSTWSFLKLNNKNVSFMWCPSHCG-----IRGNEIVDEAARNAASID 139 (271)
Q Consensus 88 ~~~~~~-~~~~~~~~~~l~~~~~~v~~~WVpgH~g-----i~gNe~AD~lAk~a~~~~ 139 (271)
....+. -..++..+......+..|.|.|||||+| ++|||.||+|||+|+...
T Consensus 100 ~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 112222 1232322222223678999999999999 999999999999999765
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.90 E-value=8.5e-24 Score=172.04 Aligned_cols=123 Identities=23% Similarity=0.306 Sum_probs=92.2
Q ss_pred CcEEEEEcCCCCCC--CeeEEEEE--CCeEE--EEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHHh
Q psy8412 12 NHTICFTDGSKTPD--STSCAFSI--GDVVH--STLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTALF 85 (271)
Q Consensus 12 ~~~~iytDGS~~~~--~~G~a~~~--~~~~~--~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l~ 85 (271)
..++||||||+..+ .+|+|++. .+... ...+ +..|++.||+.|++.||+.+.. ..+|.|+|||++|++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 46999999999854 36888764 33321 2223 3578999999999999999865 389999999999999998
Q ss_pred cc--------cc-CC--cc-HHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcC
Q psy8412 86 NI--------RF-TN--PL-ISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASI 138 (271)
Q Consensus 86 ~~--------~~-~~--~~-~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~ 138 (271)
++ +. .. +. ...++..+..+.. ...|.|.|||||+|++||+.||+|||+|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 82 21 11 11 1233333334443 4699999999999999999999999999987
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.89 E-value=9.5e-24 Score=173.14 Aligned_cols=127 Identities=20% Similarity=0.160 Sum_probs=94.1
Q ss_pred CcEEEEEcCCCCCC--CeeEEEEEC--CeEEEEe-cCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHHhc
Q psy8412 12 NHTICFTDGSKTPD--STSCAFSIG--DVVHSTL-LNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFN 86 (271)
Q Consensus 12 ~~~~iytDGS~~~~--~~G~a~~~~--~~~~~~~-l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l~~ 86 (271)
..++||||||+..+ ..|+|++.. +....+. .....|++.||+.|++.||+.+.. ..+|.|+|||++|++.|.+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS--CCEEEEECCCHHHHHHHHS
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc--CCeEEEEeChHHHHHHHhh
Confidence 57899999999864 378887753 2211111 113578999999999999998865 3599999999999999998
Q ss_pred -c---------ccCCc--c-HHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcCCCC
Q psy8412 87 -I---------RFTNP--L-ISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASIDPY 141 (271)
Q Consensus 87 -~---------~~~~~--~-~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~~~ 141 (271)
+ ...++ . ...++..+..+.. ...|.|.|||||+|+++|+.||+|||+|+.....
T Consensus 85 ~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~~ 151 (166)
T 1ril_A 85 GWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQAK 151 (166)
T ss_dssp SHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSCC
T ss_pred hHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhhc
Confidence 2 22221 1 1234444444443 3699999999999999999999999999988753
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.87 E-value=7.1e-22 Score=161.50 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCCC--C-----eeEEEEEC--C----eEEEEec-CCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCC
Q psy8412 12 NHTICFTDGSKTPD--S-----TSCAFSIG--D----VVHSTLL-NPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDS 77 (271)
Q Consensus 12 ~~~~iytDGS~~~~--~-----~G~a~~~~--~----~~~~~~l-~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS 77 (271)
..++||||||+..+ + .|+|++.. + ....... .+..+++.||+.|+..||+.++..+ .+|.|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeCh
Confidence 45899999998753 2 68888742 1 2233333 3567899999999999999887644 579999999
Q ss_pred HHHHHHHhcccc---------CC--cc-HHHHHHHHHHHHhCCCceEEEEecCCCCC------ccchHHHHHHHHhhcC
Q psy8412 78 KSSLTALFNIRF---------TN--PL-ISKVYSTWSFLKLNNKNVSFMWCPSHCGI------RGNEIVDEAARNAASI 138 (271)
Q Consensus 78 ~~al~~l~~~~~---------~~--~~-~~~~~~~~~~l~~~~~~v~~~WVpgH~gi------~gNe~AD~lAk~a~~~ 138 (271)
++|++.|+.+.. .. |. -.+++..+..+......|.|.|||||+|. +|||+||+||++|+..
T Consensus 85 ~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 85 FYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 999999986421 11 11 13333444444445678999999999994 5899999999999853
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.86 E-value=3.4e-21 Score=152.47 Aligned_cols=122 Identities=19% Similarity=0.229 Sum_probs=94.0
Q ss_pred CcEEEEEcCCCCCC--CeeEEEEEC--C--eE-E-EEecCCCCchHHHHHHHHHHHHHHHHcCCCc----eEEEEeCCHH
Q psy8412 12 NHTICFTDGSKTPD--STSCAFSIG--D--VV-H-STLLNPVNSIFSAELMAIFLCLEAILESPDH----HFLIVSDSKS 79 (271)
Q Consensus 12 ~~~~iytDGS~~~~--~~G~a~~~~--~--~~-~-~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~----~v~I~tDS~~ 79 (271)
..++||||||+..+ .+|+|++.. + .. . ...+ +.+|++.||+.|++.||+.+...+.. +|.|+|||++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 46899999999764 478887742 1 22 1 2222 35799999999999999999887777 9999999999
Q ss_pred HHHHHhcccc-CCccHHHHHHHHHHH-HhCCCceEEEEecCCCCCccchHHHHHHHHhhcC
Q psy8412 80 SLTALFNIRF-TNPLISKVYSTWSFL-KLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASI 138 (271)
Q Consensus 80 al~~l~~~~~-~~~~~~~~~~~~~~l-~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~ 138 (271)
+++.+++++. .++....++..+..+ ......|.|.||| .++|+.||+|||+|++.
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 9999998764 333344455555555 5666799999999 48999999999999864
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.85 E-value=3.3e-21 Score=153.08 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCCC--CeeEEEEE--CC---eE--EEEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHH
Q psy8412 13 HTICFTDGSKTPD--STSCAFSI--GD---VV--HSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTA 83 (271)
Q Consensus 13 ~~~iytDGS~~~~--~~G~a~~~--~~---~~--~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~ 83 (271)
.++||||||+..+ .+|+|++. .+ .. ....+ +..|++.||+.|++.||+.+...+..+|.|+|||+++++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 5899999998864 47888764 22 12 12223 4789999999999999999998888999999999999999
Q ss_pred Hhcccc-CCccHHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy8412 84 LFNIRF-TNPLISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASID 139 (271)
Q Consensus 84 l~~~~~-~~~~~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~ 139 (271)
+++.+. .++....++..+..+...+..|.|.|||+ ++|+.||+|||+|+...
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDAA 134 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHHh
Confidence 998654 33333344444445666779999999994 79999999999998653
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.84 E-value=1.1e-20 Score=182.14 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=92.8
Q ss_pred hccCCcEEEEEcCCCCCCC--eeEEEEEC-CeEEEEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHH
Q psy8412 8 NKYANHTICFTDGSKTPDS--TSCAFSIG-DVVHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTAL 84 (271)
Q Consensus 8 ~~~~~~~~iytDGS~~~~~--~G~a~~~~-~~~~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l 84 (271)
+..++.+.||||||+..++ .|+|++.. +......+ ..+||+.||+.|++.||+. ...++.|+|||++|++.+
T Consensus 431 ~p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i 505 (555)
T 1mu2_A 431 DPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIV 505 (555)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHH
T ss_pred CCCCCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHH
Confidence 3445679999999988643 67887753 22222333 4689999999999999998 478999999999999999
Q ss_pred hccccCCccHHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhh
Q psy8412 85 FNIRFTNPLISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAA 136 (271)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 136 (271)
+++...... .+...+.++...+..|.|.|||||+|++|||.||+|||+|+
T Consensus 506 ~~~~~~~~~--~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 506 ASQPTESES--KIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HTCCSEESC--HHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred hcccccccH--HHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 987643221 23333333333467899999999999999999999999884
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.83 E-value=4.1e-20 Score=148.48 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=91.0
Q ss_pred EEEEEcCCCC-C--CCeeE-EEEE--CC-eEEEE--ecC---CCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHH
Q psy8412 14 TICFTDGSKT-P--DSTSC-AFSI--GD-VVHST--LLN---PVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSL 81 (271)
Q Consensus 14 ~~iytDGS~~-~--~~~G~-a~~~--~~-~~~~~--~l~---~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al 81 (271)
++||||||+. . +++|+ |++. .+ ..... .++ ...|++.||+.|++.||+.+...+..+|.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6899999987 2 45775 7653 22 22222 222 37899999999999999999988889999999999999
Q ss_pred HHHhccccC-CccHHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHhhcCC
Q psy8412 82 TALFNIRFT-NPLISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNAASID 139 (271)
Q Consensus 82 ~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~ 139 (271)
+.+++++.. ++....+...+..+.... .|.|.|||+ ++|+.||+|||+|+...
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 999998653 333444444444443333 599999998 49999999999998764
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.82 E-value=1.1e-20 Score=182.18 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=89.3
Q ss_pred hccCCcEEEEEcCCCCCC--CeeEEEEEC-CeEEEEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHH
Q psy8412 8 NKYANHTICFTDGSKTPD--STSCAFSIG-DVVHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTAL 84 (271)
Q Consensus 8 ~~~~~~~~iytDGS~~~~--~~G~a~~~~-~~~~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l 84 (271)
+...+.+.||||||+..+ ..|+|++.. +....... ..+||+.||+.|++.||+.+ ..++.|+|||++|++.+
T Consensus 434 ep~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i 508 (557)
T 2zd1_A 434 EPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGII 508 (557)
T ss_dssp SCCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHH
T ss_pred CCCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHH
Confidence 344567999999998754 367777653 22222333 46899999999999999998 58999999999999999
Q ss_pred hccccCCccHHHHHHHHHHHHhCCCceEEEEecCCCCCccchHHHHHHHHh
Q psy8412 85 FNIRFTNPLISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEIVDEAARNA 135 (271)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a 135 (271)
+++...+.. .+...+.+.......|.|.|||||+|++|||.||+|||+|
T Consensus 509 ~~~~~~~~~--~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 509 QAQPDKSES--ELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp TTCCSEESS--HHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred hcCCccCCH--HHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 997654221 2333333222234689999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.44 E-value=2.9e-14 Score=113.38 Aligned_cols=118 Identities=12% Similarity=-0.044 Sum_probs=81.7
Q ss_pred cCCcEEEEEcCCCCCC--CeeEEEEEC--CeEEEEec-CCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHH
Q psy8412 10 YANHTICFTDGSKTPD--STSCAFSIG--DVVHSTLL-NPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTAL 84 (271)
Q Consensus 10 ~~~~~~iytDGS~~~~--~~G~a~~~~--~~~~~~~l-~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l 84 (271)
.++.+.||||||+..+ .+|+|++.. +....... -..+|++.||+.|++.||+.+.+.+. +|.|+|||++|++.+
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 4467899999998754 478888764 22221111 12578999999999999999998766 999999999999999
Q ss_pred hccccC-C---c-cHHHHHHHHHH----HHhCCCceEEEEecCCCCCccchHHHH
Q psy8412 85 FNIRFT-N---P-LISKVYSTWSF----LKLNNKNVSFMWCPSHCGIRGNEIVDE 130 (271)
Q Consensus 85 ~~~~~~-~---~-~~~~~~~~~~~----l~~~~~~v~~~WVpgH~gi~gNe~AD~ 130 (271)
++.... + + ....++..+.. +.. ..++...|+-|++.-||..||.
T Consensus 87 ~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 87 KDKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTCC
T ss_pred HcCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCcccc
Confidence 987621 1 1 12233333222 333 3455556777888889988884
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.21 E-value=1.4e-11 Score=96.50 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=56.6
Q ss_pred CCcEEEEEcCCCCCC--CeeEEEEE-CC-e-E-EEEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCHHHHHHH
Q psy8412 11 ANHTICFTDGSKTPD--STSCAFSI-GD-V-V-HSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDSKSSLTAL 84 (271)
Q Consensus 11 ~~~~~iytDGS~~~~--~~G~a~~~-~~-~-~-~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~~al~~l 84 (271)
+....||||||+..+ ..|+|+|. .+ . . ....+ +.+||+.||++|++.||+.+.+.+.. +.|+|||++|++.|
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 456789999998865 36775443 22 1 1 22223 36899999999999999999875544 89999999999999
Q ss_pred hcc
Q psy8412 85 FNI 87 (271)
Q Consensus 85 ~~~ 87 (271)
.++
T Consensus 81 ~~~ 83 (134)
T 4htu_A 81 KDK 83 (134)
T ss_dssp HHT
T ss_pred HcC
Confidence 875
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=82.60 E-value=0.15 Score=47.14 Aligned_cols=72 Identities=11% Similarity=-0.106 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCCCCeeEEEE-ECC---e--E--EEEec---CCCCchHHHHHHHHHHHHHHHHcC-CCceEEEEeCCHH
Q psy8412 12 NHTICFTDGSKTPDSTSCAFS-IGD---V--V--HSTLL---NPVNSIFSAELMAIFLCLEAILES-PDHHFLIVSDSKS 79 (271)
Q Consensus 12 ~~~~iytDGS~~~~~~G~a~~-~~~---~--~--~~~~l---~~~~s~~~AEl~Ai~~AL~~a~~~-~~~~v~I~tDS~~ 79 (271)
..+.+|||+|.. ++|+ ++ +.. . . .+..+ ....+++..|+.||..|++..... ....++|+||+.
T Consensus 345 ~~~~l~~DAS~~--~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~- 420 (455)
T 1rw3_A 345 KPFELFVDEKQG--YAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA- 420 (455)
T ss_dssp CTTSCEEEEEEC--SSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-
T ss_pred CcEEEEEeccCC--ccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-
Confidence 457899999853 3333 33 211 0 1 12222 235567889999999999887653 467999999996
Q ss_pred HHHHHhcc
Q psy8412 80 SLTALFNI 87 (271)
Q Consensus 80 al~~l~~~ 87 (271)
++..+.+.
T Consensus 421 ~~~~l~~~ 428 (455)
T 1rw3_A 421 VEALVKQP 428 (455)
T ss_dssp TTTTSSST
T ss_pred HHHHhCCC
Confidence 55555543
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=51.05 E-value=21 Score=32.34 Aligned_cols=73 Identities=3% Similarity=-0.183 Sum_probs=41.3
Q ss_pred CCcEEEEEcCCCCCCCeeEEEEECC--eE--EEEecCCCCchHHHHHHH-HHHHHHHHHc----CCCceEEEEeCCHHHH
Q psy8412 11 ANHTICFTDGSKTPDSTSCAFSIGD--VV--HSTLLNPVNSIFSAELMA-IFLCLEAILE----SPDHHFLIVSDSKSSL 81 (271)
Q Consensus 11 ~~~~~iytDGS~~~~~~G~a~~~~~--~~--~~~~l~~~~s~~~AEl~A-i~~AL~~a~~----~~~~~v~I~tDS~~al 81 (271)
...+.++||+|.. +..|+...+++ .. ..+.-....+.+.-|++| |+.||+...- .....++++||.+...
T Consensus 322 ~~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~ 400 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET 400 (428)
T ss_dssp TSCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHH
T ss_pred CCCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHH
Confidence 3458999999953 12233222332 12 222222334455567777 9999986543 2346778899997654
Q ss_pred HHH
Q psy8412 82 TAL 84 (271)
Q Consensus 82 ~~l 84 (271)
...
T Consensus 401 ~~~ 403 (428)
T 2zd1_B 401 WWT 403 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=42.40 E-value=56 Score=25.04 Aligned_cols=51 Identities=20% Similarity=0.082 Sum_probs=33.9
Q ss_pred CeeEEEEECC--eEEEEecCC--CCchHHHHHHHHHHHHHHHHcCCCceEEEEeCC
Q psy8412 26 STSCAFSIGD--VVHSTLLNP--VNSIFSAELMAIFLCLEAILESPDHHFLIVSDS 77 (271)
Q Consensus 26 ~~G~a~~~~~--~~~~~~l~~--~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS 77 (271)
.+|++++..+ +.....+.. ......||..||..|... -......+.|++|.
T Consensus 37 ~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 37 PVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 5899888533 333333332 223456999999999875 33457889999885
No 20
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=41.58 E-value=12 Score=28.32 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=14.2
Q ss_pred CCCCcc-cCCcccceeeeeeecc
Q psy8412 218 DPPFCQ-CGAALSVILNYIVDNF 239 (271)
Q Consensus 218 ~sp~C~-Cg~~et~~~h~~~~c~ 239 (271)
.-|.|| |+...|-+.--++-||
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCP 48 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCP 48 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEET
T ss_pred cCCCCCCCCCcceEecCCeEECC
Confidence 459999 9987666533344444
No 21
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=38.28 E-value=40 Score=26.74 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=31.1
Q ss_pred CeeEEEEECCeEEEEecCC----CCchHHHHHHHHHHHHHHHHcCCCceEEEEe
Q psy8412 26 STSCAFSIGDVVHSTLLNP----VNSIFSAELMAIFLCLEAILESPDHHFLIVS 75 (271)
Q Consensus 26 ~~G~a~~~~~~~~~~~l~~----~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~t 75 (271)
.+|+.+|..+.......+. ......||..||..|.+..........++|+
T Consensus 37 pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYv 90 (179)
T 2nx8_A 37 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFV 90 (179)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEE
Confidence 5888888755443322211 1124569999999998876444456667776
No 22
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=35.33 E-value=78 Score=23.59 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=33.6
Q ss_pred CeeEEEEECC--eEEEEecCCCCchHHHHHHHHHHHHHHHHcCCCceEEEEeCC
Q psy8412 26 STSCAFSIGD--VVHSTLLNPVNSIFSAELMAIFLCLEAILESPDHHFLIVSDS 77 (271)
Q Consensus 26 ~~G~a~~~~~--~~~~~~l~~~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS 77 (271)
.+|++++..+ +.....+........||..||..|... -......+.+++|.
T Consensus 28 ~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 5899888543 333333332333567999999999874 23357788889875
No 23
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=34.03 E-value=73 Score=24.55 Aligned_cols=50 Identities=14% Similarity=-0.026 Sum_probs=31.4
Q ss_pred CeeEEEEECCeEEEEecCC----CCchHHHHHHHHHHHHHHHHcCCCceEEEEe
Q psy8412 26 STSCAFSIGDVVHSTLLNP----VNSIFSAELMAIFLCLEAILESPDHHFLIVS 75 (271)
Q Consensus 26 ~~G~a~~~~~~~~~~~l~~----~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~t 75 (271)
.+|+.++..+......... ......||..||..|.+..........++|+
T Consensus 28 pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 28 PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 5888888755443222211 1224569999999998865444466777776
No 24
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=34.00 E-value=52 Score=25.68 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=31.5
Q ss_pred CCeeEEEEECCeEEEEecCC----CCchHHHHHHHHHHHHHHHHcCCCceEEEEe
Q psy8412 25 DSTSCAFSIGDVVHSTLLNP----VNSIFSAELMAIFLCLEAILESPDHHFLIVS 75 (271)
Q Consensus 25 ~~~G~a~~~~~~~~~~~l~~----~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~t 75 (271)
..+|+.+|..+.......+. ....-.||..||..|.+..........++|+
T Consensus 32 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 32 GPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 35888888655443322221 1124559999999998865444456677776
No 25
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=33.48 E-value=54 Score=25.77 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=31.3
Q ss_pred CeeEEEEECCeEEEEecCC----CCchHHHHHHHHHHHHHHHHcCCCceEEEEe
Q psy8412 26 STSCAFSIGDVVHSTLLNP----VNSIFSAELMAIFLCLEAILESPDHHFLIVS 75 (271)
Q Consensus 26 ~~G~a~~~~~~~~~~~l~~----~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~t 75 (271)
.+|+.++..+.......+. ......||..||..|.+..........++|+
T Consensus 44 pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 44 PVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 5888888755443222211 1123569999999998865444466777776
No 26
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=33.07 E-value=1.2e+02 Score=22.70 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=33.9
Q ss_pred CeeEEEEECC--eEEEEecCC--CCchHHHHHHHHHHHHHHHHcCCCceEEEEeCC
Q psy8412 26 STSCAFSIGD--VVHSTLLNP--VNSIFSAELMAIFLCLEAILESPDHHFLIVSDS 77 (271)
Q Consensus 26 ~~G~a~~~~~--~~~~~~l~~--~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS 77 (271)
.+|++++..+ +........ ......||..||..|... -......+.|++|.
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 5898888643 333333332 223466999999999876 34457889999875
No 27
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=32.85 E-value=47 Score=25.15 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=29.7
Q ss_pred CeeEEEEECCeEEEEecCC----CCchHHHHHHHHHHHHHHHHcCCCceEEEEe
Q psy8412 26 STSCAFSIGDVVHSTLLNP----VNSIFSAELMAIFLCLEAILESPDHHFLIVS 75 (271)
Q Consensus 26 ~~G~a~~~~~~~~~~~l~~----~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~t 75 (271)
.+|+.++..+.......+. ......||..||..|.+..........++|+
T Consensus 25 ~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 25 PIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 5888888755433222221 1124569999999998765433345556665
No 28
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=28.08 E-value=1.1e+02 Score=23.11 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=34.4
Q ss_pred CeeEEEEECC--eEEEEecCC--CCchHHHHHHHHHHHHHHHHcCCCceEEEEeCCH
Q psy8412 26 STSCAFSIGD--VVHSTLLNP--VNSIFSAELMAIFLCLEAILESPDHHFLIVSDSK 78 (271)
Q Consensus 26 ~~G~a~~~~~--~~~~~~l~~--~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS~ 78 (271)
.+|++++..+ +.....+.. ......||..||..|+..- ......|.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG-DKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC-CCceEEEEEEeCCC
Confidence 5899888643 333444432 2234669999999998752 33578899999863
No 29
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=27.44 E-value=63 Score=25.22 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=29.8
Q ss_pred CeeEEEEECCeEEEEecCC----CCchHHHHHHHHHHHHHHHHcCCCceEEEEe
Q psy8412 26 STSCAFSIGDVVHSTLLNP----VNSIFSAELMAIFLCLEAILESPDHHFLIVS 75 (271)
Q Consensus 26 ~~G~a~~~~~~~~~~~l~~----~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~t 75 (271)
.+|+.++..+.......+. ......||..||..|.+..........++|+
T Consensus 30 pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYv 83 (168)
T 1z3a_A 30 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYV 83 (168)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEE
T ss_pred cEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEE
Confidence 5888888655443222211 1123569999999998765443445556665
No 30
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=22.57 E-value=51 Score=31.00 Aligned_cols=68 Identities=9% Similarity=-0.084 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCCceEEEE--eCCHHHHHHHhccccC---------CccHHHHHHHHHHHHhCCCceEEEEecCCC
Q psy8412 52 ELMAIFLCLEAILESPDHHFLIV--SDSKSSLTALFNIRFT---------NPLISKVYSTWSFLKLNNKNVSFMWCPSHC 120 (271)
Q Consensus 52 El~Ai~~AL~~a~~~~~~~v~I~--tDS~~al~~l~~~~~~---------~~~~~~~~~~~~~l~~~~~~v~~~WVpgH~ 120 (271)
-+.+|..-|.++.+.+...|.+- .++.+ .-+... -+........+..++++|.+|-+-||+.|+
T Consensus 170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 244 (583)
T 1ea9_C 170 DLQGVIDHLDHLSKLGVNAVYFTPLFKATT-----NHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS 244 (583)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCSSCSS-----SSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBC
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccccC
Confidence 47788889999999888888765 22211 111111 122344444455688899999999999999
Q ss_pred CCcc
Q psy8412 121 GIRG 124 (271)
Q Consensus 121 gi~g 124 (271)
+...
T Consensus 245 ~~~~ 248 (583)
T 1ea9_C 245 GRTF 248 (583)
T ss_dssp CTTT
T ss_pred CCcc
Confidence 8754
No 31
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=21.96 E-value=46 Score=19.01 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=7.8
Q ss_pred Ccc-cCCcccc
Q psy8412 221 FCQ-CGAALSV 230 (271)
Q Consensus 221 ~C~-Cg~~et~ 230 (271)
.|+ |+.+||.
T Consensus 2 lC~~C~~peT~ 12 (36)
T 1k81_A 2 ICRECGKPDTK 12 (36)
T ss_dssp CCSSSCSCEEE
T ss_pred CCcCCCCCCcE
Confidence 488 9988766
No 32
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=21.44 E-value=1.2e+02 Score=24.08 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=24.9
Q ss_pred CeeEEEEECCeEEEEecCC----CCchHHHHHHHHHHHHHHHH
Q psy8412 26 STSCAFSIGDVVHSTLLNP----VNSIFSAELMAIFLCLEAIL 64 (271)
Q Consensus 26 ~~G~a~~~~~~~~~~~l~~----~~s~~~AEl~Ai~~AL~~a~ 64 (271)
.+|+.+|..+......... ....-.||..||..|.+.+.
T Consensus 47 pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~ 89 (189)
T 3dh1_A 47 PVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCR 89 (189)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHh
Confidence 5888888765543333221 23345699999999987643
No 33
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=21.02 E-value=1.5e+02 Score=22.70 Aligned_cols=51 Identities=12% Similarity=-0.024 Sum_probs=32.9
Q ss_pred CeeEEEEECC--eEEEEecCC--CCchHHHHHHHHHHHHHHHHcCCCceEEEEeCC
Q psy8412 26 STSCAFSIGD--VVHSTLLNP--VNSIFSAELMAIFLCLEAILESPDHHFLIVSDS 77 (271)
Q Consensus 26 ~~G~a~~~~~--~~~~~~l~~--~~s~~~AEl~Ai~~AL~~a~~~~~~~v~I~tDS 77 (271)
.+|+++...+ +.....+.. ......||-.||..|+..- ......|.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G-~~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGG-GGRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-CCCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcC-CCceEEEEEEcCC
Confidence 5899988644 333444432 2234569999999998753 2356778888764
No 34
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=21.00 E-value=72 Score=29.95 Aligned_cols=69 Identities=12% Similarity=-0.103 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCceEEEE--eCCHHHHHHHhccccC---------CccHHHHHHHHHHHHhCCCceEEEEecCCC
Q psy8412 52 ELMAIFLCLEAILESPDHHFLIV--SDSKSSLTALFNIRFT---------NPLISKVYSTWSFLKLNNKNVSFMWCPSHC 120 (271)
Q Consensus 52 El~Ai~~AL~~a~~~~~~~v~I~--tDS~~al~~l~~~~~~---------~~~~~~~~~~~~~l~~~~~~v~~~WVpgH~ 120 (271)
-+.+|..-|.++.+.+...|.+- .++.+ .-+... -+........+..++++|..|-+-||+.|+
T Consensus 171 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~ 245 (585)
T 1wzl_A 171 DLKGVIDRLPYLEELGVTALYFTPIFASPS-----HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 47788888999999887777654 22211 111111 122344445555688999999999999999
Q ss_pred CCccc
Q psy8412 121 GIRGN 125 (271)
Q Consensus 121 gi~gN 125 (271)
+....
T Consensus 246 ~~~~~ 250 (585)
T 1wzl_A 246 GDQFF 250 (585)
T ss_dssp CTTSH
T ss_pred CCccH
Confidence 87543
No 35
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=20.93 E-value=73 Score=29.93 Aligned_cols=76 Identities=14% Similarity=-0.009 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEE--eCCHHHHHHHhccccC---------CccHHHHHHHHHHHHhCCCceEEEEecCC
Q psy8412 51 AELMAIFLCLEAILESPDHHFLIV--SDSKSSLTALFNIRFT---------NPLISKVYSTWSFLKLNNKNVSFMWCPSH 119 (271)
Q Consensus 51 AEl~Ai~~AL~~a~~~~~~~v~I~--tDS~~al~~l~~~~~~---------~~~~~~~~~~~~~l~~~~~~v~~~WVpgH 119 (271)
+-+.+|..-|.++.+.+...|.+- .++.+ .-+... -+........+..++++|..|-+-||+.|
T Consensus 173 G~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH 247 (588)
T 1j0h_A 173 GDLQGIIDHLDYLVDLGITGIYLTPIFRSPS-----NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNH 247 (588)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcCc
Confidence 357889899999999888777764 22211 111111 12234444555568899999999999999
Q ss_pred CCCccchHHHHH
Q psy8412 120 CGIRGNEIVDEA 131 (271)
Q Consensus 120 ~gi~gNe~AD~l 131 (271)
++.....-.|.+
T Consensus 248 ~~~~~~~f~~~~ 259 (588)
T 1j0h_A 248 CGYEFAPFQDVW 259 (588)
T ss_dssp CCTTCHHHHHHH
T ss_pred CcccchhHHHHH
Confidence 987655444433
No 36
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=20.72 E-value=72 Score=28.33 Aligned_cols=72 Identities=13% Similarity=-0.040 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCceEEEE--eCCH----HHHHHHhccc-cCCccHHHHHHHHHHHHhCCCceEEEEecCCCCCcc
Q psy8412 53 LMAIFLCLEAILESPDHHFLIV--SDSK----SSLTALFNIR-FTNPLISKVYSTWSFLKLNNKNVSFMWCPSHCGIRG 124 (271)
Q Consensus 53 l~Ai~~AL~~a~~~~~~~v~I~--tDS~----~al~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~v~~~WVpgH~gi~g 124 (271)
+.+|..-|.++.+.+...|.+- .++. +.+.-..... ..-+........+..++++|.+|-+-+|+.|++...
T Consensus 20 ~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~ 98 (405)
T 1ht6_A 20 YNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADY 98 (405)
T ss_dssp HHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcccCCC
Confidence 6788888999988888877764 1111 1000000000 111223444445556889999999999999998653
No 37
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=20.65 E-value=56 Score=22.91 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=11.0
Q ss_pred cchHHHHHHHHhh
Q psy8412 124 GNEIVDEAARNAA 136 (271)
Q Consensus 124 gNe~AD~lAk~a~ 136 (271)
|++.||++|++--
T Consensus 22 g~~~A~~iA~k~G 34 (90)
T 1kn6_A 22 GQEAASAIAEELG 34 (90)
T ss_dssp THHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcC
Confidence 7899999998654
Done!