RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8412
(271 letters)
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 54.7 bits (132), Expect = 1e-09
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 12/131 (9%)
Query: 17 FTDGS--KTPDSTSCAFSIGDVVHSTLL-------NPVNSIFSAELMAIFLCLEAILESP 67
+TDGS + + AF VH + E+ A ++ +
Sbjct: 10 YTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLG 69
Query: 68 DHHFLIVSDSKSSLTALFNIRFTNPLISKVYSTWSFLKLNNKNVSFMWCPSHCGIRGNEI 127
I+ D ++ Y + SF +H G N+
Sbjct: 70 -VKIRILHDYAGIAFWATGEWKAKNEFTQAY--AKLMNQYRGIYSFEKVKAHSGNEFNDY 126
Query: 128 VDEAARNAASI 138
VD A++A I
Sbjct: 127 VDMKAKSALGI 137
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 54.5 bits (131), Expect = 2e-09
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 23/141 (16%)
Query: 11 ANHTICFTDGS--KTPDSTSCAFSIGD---VVHSTLLNPVNSIFSAELMAIFLCLEAILE 65
A++T +TDGS ++ V+ + L S AEL+A+ +A+
Sbjct: 22 ADYTW-YTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIAL---TQALKM 77
Query: 66 SPDHHFLIVSDSKSSLTALFNIRFTNPLISKVYSTWSFLKL-----NNKNVSFMWCPSHC 120
+ + +DS+ F + ++ + L L K +S + CP H
Sbjct: 78 AEGKKLNVYTDSRY----AFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQ 133
Query: 121 G-----IRGNEIVDEAARNAA 136
RGN + D+AAR AA
Sbjct: 134 KGNSAEARGNRMADQAAREAA 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 47/304 (15%), Positives = 83/304 (27%), Gaps = 121/304 (39%)
Query: 18 TDGSKTPDS---TSCAFS---IG-------DVVHSTL-LNPVNSIFSAELMAIFLCLEAI 63
+ S TPD S S IG V L P + L + +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE--LRSYLKGATGHSQGL 277
Query: 64 LESPDHHFLIVSDSKSSLTALFNIRFTNPLISKVYSTW-SFLKLNNKNVSFM-WCPSHCG 121
+ TA+ I++ +W SF K ++ + + G
Sbjct: 278 V-----------------TAVA--------IAET-DSWESFFVSVRKAITVLFFI----G 307
Query: 122 IRGNE----------IVDEAARNAASIDPYKLCTP----EDLKPFISFLIKSEWQNQWNH 167
+R E I++++ N + P +P +L + +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGV-P----SPMLSISNLTQ--EQVQD--------Y 352
Query: 168 IPNTNKLKAIKPTIEHWATSNQNKRLQEVI------L----TRLR-------IGHTRITH 210
+ TN P + S N V+ L LR + +RI
Sbjct: 353 VNKTNS---HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 211 N-------HLFTKTDPPF-CQC-GAALSVILNYIVDNFILVHKHDIGVLFLACRMWNTSS 261
+ + F PF A +I +V N + +N
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS---------------FNAKD 454
Query: 262 LNVP 265
+ +P
Sbjct: 455 IQIP 458
Score = 35.4 bits (81), Expect = 0.022
Identities = 26/160 (16%), Positives = 44/160 (27%), Gaps = 56/160 (35%)
Query: 18 TDGSKTPDS------------TSCAFSIGDVVHSTLLNPVNSIFSAELMAIFLCLEAI-L 64
D S+ P S + F HS LL P + + + +L+ + A +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPF------HSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 65 ESPDHHFLIVSD----SKSSLTALFNIRFTNPLISKVYSTWSFLKLNNKNVSFMWCPSH- 119
+ P + SD S S + + P V W F +H
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLP----VK--WE------TTTQFK--ATHI 501
Query: 120 --------CGI----------RGNEIVDEAARNAASIDPY 141
G+ G ++ + D Y
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 35.0 bits (80), Expect = 0.030
Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 88/227 (38%)
Query: 1 MFCETINNKYANHTICFTDGSKTPDSTSCAFSIGDVVHSTLLN------PVNSIFSAELM 54
M ETI + F + STS F + LL+ P ++ E
Sbjct: 1691 MIFETIVDGKLKTEKIFKE--INEHSTSYTFR-SE---KGLLSATQFTQP--ALTLME-K 1741
Query: 55 AIFLCLEAILESPDHHFLIVSDSKS---SL---TALFNIRFTNPLISKVYSTWSFLKLNN 108
A F L++ LI +D+ SL AL ++ + V S S +++
Sbjct: 1742 AAFEDLKS-------KGLIPADATFAGHSLGEYAALASL-------ADVMSIESLVEV-- 1785
Query: 109 KNVSFMWCPSHCGIRG---NEIV--DEAARNA---ASIDPYKL---CTPEDLKPFISFLI 157
V + RG V DE R+ +I+P ++ + E L+ + +
Sbjct: 1786 --VFY---------RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 158 KSEWQNQW-----NH---------------------IPNTNKLKAIK 178
K + W N+ + N KL+ I
Sbjct: 1835 K---RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
Score = 31.9 bits (72), Expect = 0.23
Identities = 46/231 (19%), Positives = 73/231 (31%), Gaps = 99/231 (42%)
Query: 31 FSIGDVVHSTLLNPVNSI--FSAE--------LMAIFLCLEAILESPDHH---FLIVSDS 77
FSI D+V + NPVN F E A + E I++ F +++
Sbjct: 1659 FSILDIVIN---NPVNLTIHFGGEKGKRIRENYSA--MIFETIVDGKLKTEKIFKEINEH 1713
Query: 78 KSSLT------ALFNIRFTNP---LISKVYSTWSFLK---LNNKNVSFMWCPSHCG---- 121
+S T L +FT P L+ + + LK L + +F G
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLME--KAAFEDLKSKGLIPADATF------AGHSLG 1765
Query: 122 ----------------------IRG---NEIV--DEAARNA---ASIDPYKL---CTPED 148
RG V DE R+ +I+P ++ + E
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 149 LKPFISFLIKSEWQNQW-----NH-IPN---------------TNKLKAIK 178
L+ + + K + W N+ + N TN L IK
Sbjct: 1826 LQYVVERVGK---RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Score = 27.3 bits (60), Expect = 6.7
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 15/59 (25%)
Query: 50 SAELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFNIRFTNPLISKVYSTWSFLKLNN 108
AEL+ FL + L P V L F N +L+ N+
Sbjct: 57 PAELVGKFLGYVSSLVEPSK----VGQFDQVLNLCLT-EFEN----------CYLEGND 100
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 40.6 bits (96), Expect = 1e-04
Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 37/110 (33%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFNIRFTNPLISKVYSTWSFLKLNN-- 108
AE+ A +E + ++ ++S FT I+ W K N
Sbjct: 53 AEIHAACKAIEQAKTQNINKLVLYTNSM----------FTINGITNWVQGW---KKNGWK 99
Query: 109 -------KN---------------VSFMWCPSHCGIRGNEIVDEAARNAA 136
N + +M P H G GNE D AR A
Sbjct: 100 TSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGA 149
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 37.9 bits (89), Expect = 0.001
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 105 KLNNK-NVSFMWCPSHCGIRGNEIVDEAARNAA 136
+L K V W P+H GI GNE VD+
Sbjct: 113 QLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 145
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 35.9 bits (84), Expect = 0.004
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 103 FLKLNNK-NVSFMWCPSHCGIRGNEIVDEAARNAA 136
+ + + W H G NE DE AR AA
Sbjct: 107 LDAALGQHQIKWEWVKGHAGHPENERADELARAAA 141
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 36.0 bits (84), Expect = 0.004
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 103 FLKLNNK-NVSFMWCPSHCGIRGNEIVDEAARNAASIDPYKLCTPED 148
K + + W H G NE D+ AR AA +P T D
Sbjct: 109 LDKAAQLHQIDWRWVKGHAGHAENERCDQLARAAAEANP----TQID 151
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 36.7 bits (85), Expect = 0.007
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFN--IRFTNPLISKVYSTWSFLKLNN 108
EL AI+L L+ +S IV+DS+ +L + + + L++++ +L
Sbjct: 479 TELQAIYLALQ---DSGLE-VNIVTDSQYALGIIQAQPDKSESELVNQIIE-----QLIK 529
Query: 109 KNVSFM-WCPSHCGIRGNEIVDE 130
K ++ W P+H GI GNE VD+
Sbjct: 530 KEKVYLAWVPAHKGIGGNEQVDK 552
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 35.3 bits (82), Expect = 0.008
Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 103 FLKLNNK-NVSFMWCPSHCGIRGNEIVDEAARNAASIDPYKLCTPEDLKPF 152
L V F + H G NE VD AR A C P F
Sbjct: 112 LLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLF 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.009
Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 45/166 (27%)
Query: 60 LEAILESPDH-HFLIVSD---SKSSLTALFNIR-----------FTNPLISKVYS----- 99
L +L+S + + L+V + + A FN+ T+ L + +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 100 --TWSFLKLNNKNV--SFMWCPSHCGIRGNEIVDEAARNAASIDPYKLCT-PEDLKPFIS 154
+ + K++ ++ C + R + +P +L E ++ ++
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCR----------PQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 155 FLIKSEWQNQWNHIPNTNKL-KAIKPTIEHWATSNQNKRLQE-VIL 198
W N W H+ N +KL I+ ++ + K +
Sbjct: 343 -----TWDN-WKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 34.8 bits (81), Expect = 0.010
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 103 FLKLNNK-NVSFMWCPSHCGIRGNEIVDEAARNAA 136
LKL V+F H N DE AR A
Sbjct: 108 ILKLTTLHRVTFHKVKGHSDNPYNSRADELARLAI 142
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 35.5 bits (82), Expect = 0.014
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSKSSLTALFN--IRFTNPLISKVYSTWSFLKLNN 108
AEL A + L +S I+ DS+ + + + + +++++ ++
Sbjct: 476 AELEAFAMALT---DSGPK-VNIIVDSQYVMGIVASQPTESESKIVNQIIE-----EMIK 526
Query: 109 KNVSFM-WCPSHCGIRGNEIVDE 130
K ++ W P+H GI GN+ VD
Sbjct: 527 KEAIYVAWVPAHKGIGGNQEVDH 549
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 32.3 bits (74), Expect = 0.070
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 51 AELMAIFLCLEAILESPDHHFLIVSDSK---SSLTALFNIRFTNPLISKVYSTWSFLKLN 107
AE + L+ ++ ++ DSK ++ + ++ +P + K+Y L
Sbjct: 49 AEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVK--HPDLLKLYVQAQALASQ 106
Query: 108 NKNVSFMWCPSHCGIRGNEIVDEAARNAASI 138
+ +++ W P N D A +A
Sbjct: 107 FRRINYEWVPRA----RNTYADRLANDAMDA 133
>3ci0_J Pseudopilin GSPJ; general secretory pathway, pseudopilus, type 4
pilin biogene methylation, protein transport; 2.20A
{Escherichia coli} SCOP: d.24.1.5
Length = 163
Score = 29.2 bits (65), Expect = 0.85
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 153 ISFLIKSEWQNQWNHIPNTNKL-KAIKPTIEH 183
+ F + WQ W + + A++ T+
Sbjct: 119 LQFYDGTRWQESW---SSVQAIPVAVRMTLHS 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.2
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 26/47 (55%)
Query: 136 ASIDPYKLCTPEDLKPFISFLIKSEWQNQWNHIPNTNKLKAIKPTIE 182
AS+ Y D P + AIK T+E
Sbjct: 27 ASLKLY---AD-DSAPAL----------------------AIKATME 47
>2ret_B EPSJ; general secretion pathway, cholera, pseudopilus, type 4 PILI
biogenesis, methylation, protein transport; HET: MSE;
2.21A {Vibrio vulnificus} SCOP: d.24.1.5 PDB: 3cfi_B
Length = 175
Score = 28.9 bits (64), Expect = 1.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 153 ISFLIKSEWQNQWNHIPNTNKL-KAIKPTIEH 183
+ F +W N+W N L AI +
Sbjct: 127 VRFYDGKQWINEW---SNELTLPAAISVELTL 155
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 1.9
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 42/94 (44%)
Query: 75 SDSKSSLTALFNIRFTNPLISKVYS-TWSFLKLNNKNVSFMWCPSHCGI---RG------ 124
S+SK SL LFN R+ +S +W+ ++ I RG
Sbjct: 641 SESKLSLETLFN-RW--------HSESWA------NQLTVC----GAIIGWTRGTGLMSA 681
Query: 125 NEIVDEAARN-----------AASIDPYKLCTPE 147
N I+ E A ++ L TPE
Sbjct: 682 NNIIAEGIEKMGVRTFSQKEMAFNL--LGLLTPE 713
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 2.7
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 106 LNNKNVSFMWCPSHCGIRGNEIVDEAAR 133
LN + CP C + +IV+ +
Sbjct: 18 LNIV----LTCPE-CKVYPPKIVERFSE 40
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein,
endotoxin, lipid binding protein; NMR {Penaeus monodon}
Length = 102
Score = 25.9 bits (56), Expect = 6.9
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 114 MWCPSHCGIRGN-------EIVDEAARN-AASIDPYKLCTPEDLKPFIS 154
MWCP IRG + + A++ L + ++ ++S
Sbjct: 53 MWCPGWTAIRGEASTRSQSGVAGKTAKDFVRKAFQKGLISQQEANQWLS 101
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 26.7 bits (60), Expect = 7.0
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 167 HIPNTNKLKAIK 178
H+PN K
Sbjct: 186 HVPNMRFCHHFK 197
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 26.8 bits (60), Expect = 9.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 167 HIPNTNKLKAIK 178
H+P+T K+K K
Sbjct: 185 HVPSTAKIKEFK 196
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 26.7 bits (60), Expect = 9.1
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 17/51 (33%)
Query: 139 DPYKL-----CTPEDLKPFISFLIKSEWQNQWN------HIPNTNKLKAIK 178
+ YK+ D K + ++ H+PN K
Sbjct: 153 ESYKVSILDENIAHDDK--PGLY----FHEEYVDMCRGPHVPNMRFCHHFK 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.430
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,124,052
Number of extensions: 227331
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 28
Length of query: 271
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 179
Effective length of database: 4,133,061
Effective search space: 739817919
Effective search space used: 739817919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.2 bits)