BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8413
(796 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/798 (53%), Positives = 552/798 (69%), Gaps = 13/798 (1%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
+RRR +E+DG + KRR+ + E ED E LI KVGE+S SLES+L+GLA VLE
Sbjct: 2 SRRRHSDENDGGQP--HKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA 59
Query: 63 DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNC 122
DL Y+ KILR+L A PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK
Sbjct: 60 DLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKAN 119
Query: 123 QWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPW 182
+N A Y +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS LPW
Sbjct: 120 NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPW 179
Query: 183 VGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKL 242
VG+ +R K HV LQVW++DKPHPQEEYLDCLWAQI KL
Sbjct: 180 VGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKL 239
Query: 243 RQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPE 302
++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD PE
Sbjct: 240 KKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPE 299
Query: 303 EPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIF 360
P +PG+HS+ERF+IEE+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF
Sbjct: 300 GPV---MPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIF 356
Query: 361 GELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAW 420
ELF+LP P ++++ Y ++LIELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ W
Sbjct: 357 AELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINW 416
Query: 421 FAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPL 480
F++HLSNFQF+WSWEDW L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L
Sbjct: 417 FSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSAL 476
Query: 481 LPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD 540
P P +KY E LPG A L A K K ++ +EI +IL +P+ + D+D +
Sbjct: 477 CPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDE 535
Query: 541 --PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELW 598
NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W
Sbjct: 536 GFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVW 594
Query: 599 HDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNR 658
+H QM+AVL+DKM++TQ++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V +
Sbjct: 595 RNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLK 654
Query: 659 VGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLI 718
+ KEL +AKE+L +AQ++QKNLFL+
Sbjct: 655 IQKELEEAKEKL--ARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLV 712
Query: 719 IFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQ 778
IFQRFIMIL+EHLVRC+TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT
Sbjct: 713 IFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTA 772
Query: 779 DLEPHILDVFHQFLALNA 796
+L+PHIL VF QF AL A
Sbjct: 773 ELDPHILAVFQQFCALQA 790
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/778 (53%), Positives = 539/778 (69%), Gaps = 25/778 (3%)
Query: 23 RVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKY 82
+ + E ED E LI KVGE+S SLES+L+GLA VLE DL Y+ KILR+L A
Sbjct: 1 KTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLL 60
Query: 83 PEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHV 142
PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK +N A Y +RFL+DLVNCHV
Sbjct: 61 PEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHV 120
Query: 143 ISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRXXXXXXXXXXXXXXXXX 202
I+ S++ + EN + ++E+ VP VR+DWYVYA LS LPWVG+
Sbjct: 121 IAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 180
Query: 203 XXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSR 262
+R K HV LQVW++DKPHPQEEYLDCLWAQI KL++D W + HI RPY FDS
Sbjct: 181 ESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSI 240
Query: 263 LSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEE 322
L ALQHNLP PPH + +YPMP V+FRMFDYTD PE P +PG+HS+ERF+IEE
Sbjct: 241 LCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPV---MPGSHSVERFVIEE 297
Query: 323 HLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVL 380
+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF ELF+LP P ++++ Y ++L
Sbjct: 298 NLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLL 357
Query: 381 IELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESA 440
IELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ WF++HLSNFQF+WSWEDW
Sbjct: 358 IELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDC 417
Query: 441 LKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLP 500
L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L P P +KY E LP
Sbjct: 418 LSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLP 477
Query: 501 GFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD--PINPLKIDVFTQVLLYLG 558
G A L A K K ++ +EI +IL +P+ + D+D + NPLKI+VF Q LL+L
Sbjct: 478 GHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA 536
Query: 559 SKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLL 618
+KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W +H QM+AVL+DKM++TQ++
Sbjct: 537 AKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIV 595
Query: 619 HCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVXXXXX 678
C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V ++ KEL +AKE+L
Sbjct: 596 DCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLAR------ 649
Query: 679 XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLIIFQRFIMILSEHLVRCDTDG 738
+AQ++QKNLFL+IFQRFIMIL+EHLVRC+TDG
Sbjct: 650 ----------QHDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDG 699
Query: 739 VDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA 796
T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT +L+PHIL VF QF AL A
Sbjct: 700 TSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 757
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/778 (53%), Positives = 539/778 (69%), Gaps = 11/778 (1%)
Query: 23 RVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKY 82
+ + E ED E LI KVGE+S SLES+L+GLA VLE DL Y+ KILR+L A
Sbjct: 1 KTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLL 60
Query: 83 PEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHV 142
PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK +N A Y +RFL+DLVNCHV
Sbjct: 61 PEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHV 120
Query: 143 ISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRXXXXXXXXXXXXXXXXX 202
I+ S++ + EN + ++E+ VP VR+DWYVYA LS LPWVG+
Sbjct: 121 IAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 180
Query: 203 XXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSR 262
+R K HV LQVW++DKPHPQEEYLDCLWAQI KL++D W + HI RPY FDS
Sbjct: 181 ESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSI 240
Query: 263 LSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEE 322
L ALQHNLP PPH + +YPMP V+FRMFDYTD PE P +PG+HS+ERF+IEE
Sbjct: 241 LCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPV---MPGSHSVERFVIEE 297
Query: 323 HLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVL 380
+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF ELF+LP P ++++ Y ++L
Sbjct: 298 NLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLL 357
Query: 381 IELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESA 440
IELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ WF++HLSNFQF+WSWEDW
Sbjct: 358 IELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDC 417
Query: 441 LKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLP 500
L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L P P +KY E LP
Sbjct: 418 LSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLP 477
Query: 501 GFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD--PINPLKIDVFTQVLLYLG 558
G A L A K K ++ +EI +IL +P+ + D+D + NPLKI+VF Q LL+L
Sbjct: 478 GHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA 536
Query: 559 SKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLL 618
+KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W +H QM+AVL+DKM++TQ++
Sbjct: 537 AKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIV 595
Query: 619 HCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVXXXXX 678
C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V ++ KEL +AKE+L
Sbjct: 596 DCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKL--ARQHKR 653
Query: 679 XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLIIFQRFIMILSEHLVRCDTDG 738
+AQ++QKNLFL+IFQRFIMIL+EHLVRC+TDG
Sbjct: 654 RSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDG 713
Query: 739 VDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA 796
T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT +L+PHIL VF QF AL A
Sbjct: 714 TSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 771
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/778 (52%), Positives = 527/778 (67%), Gaps = 59/778 (7%)
Query: 23 RVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKY 82
+ + E ED E LI KVGE+S SLES+L+GLA VLE DL Y+ KILR+L A
Sbjct: 1 KTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLL 60
Query: 83 PEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHV 142
PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK +N A Y +RFL+DLVNCHV
Sbjct: 61 PEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHV 120
Query: 143 ISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRXXXXXXXXXXXXXXXXX 202
I+ S++ + EN + ++E+ VP VR+DWYVYA LS LPWVG+
Sbjct: 121 IAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 180
Query: 203 XXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSR 262
+R K HV LQVW++DKPHPQEEYLDCLWAQI KL++D W + HI RPY FDS
Sbjct: 181 ESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSI 240
Query: 263 LSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEE 322
L ALQHNLP PPH + +YPMP V+FRMFDYTD PE P +PG+HS+ERF+IEE
Sbjct: 241 LCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPV---MPGSHSVERFVIEE 297
Query: 323 HLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVL 380
+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF ELF+LP P ++++ Y ++L
Sbjct: 298 NLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLL 357
Query: 381 IELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESA 440
IELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ WF++HLSNFQF+WSWEDW
Sbjct: 358 IELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDC 417
Query: 441 LKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLP 500
L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L P P +KY E LP
Sbjct: 418 LSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLP 477
Query: 501 GFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD--PINPLKIDVFTQVLLYLG 558
G A L A K K ++ +EI +IL +P+ + D+D + NPLKI+VF Q LL+L
Sbjct: 478 GHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA 536
Query: 559 SKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLL 618
+KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W +H QM+AVL+DKM++TQ++
Sbjct: 537 AKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIV 595
Query: 619 HCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVXXXXX 678
C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V
Sbjct: 596 DCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHV---------------------- 633
Query: 679 XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLIIFQRFIMILSEHLVRCDTDG 738
AQ++QKNLFL+IFQRFIMIL+EHLVRC+TDG
Sbjct: 634 ----------------------------GAQSEQKNLFLVIFQRFIMILTEHLVRCETDG 665
Query: 739 VDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA 796
T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT +L+PHIL VF QF AL A
Sbjct: 666 TSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 723
>pdb|1RMV|A Chain A, Ribgrass Mosaic Virus, Fiber Diffraction
Length = 157
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 19/161 (11%)
Query: 422 AYHLSNF-QFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRL---SYH-QRIKEIVPPQ 476
+Y+++N Q+Q+ W P P +LN+CV SY Q ++ V Q
Sbjct: 2 SYNITNSNQYQYFAAVWA--------EPTP-----MLNQCVSALSQSYQTQAGRDTVRQQ 48
Query: 477 FAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKI-PSSSMD 535
FA LL P+ ++ G + L A+ K + N I+ + PS+S
Sbjct: 49 FANLLSTIVAPNQRFPDTGFRVYVNSAVIKPLYEALMKSFDTRNRIIETEEESRPSASEV 108
Query: 536 EDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVL 576
+ ++ + + +Q+ L L S H + ++F +L
Sbjct: 109 ANATQRVDDATVAIRSQIQLLLNELSNGHGYMNRAEFEAIL 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,594,556
Number of Sequences: 62578
Number of extensions: 889666
Number of successful extensions: 2025
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1993
Number of HSP's gapped (non-prelim): 13
length of query: 796
length of database: 14,973,337
effective HSP length: 107
effective length of query: 689
effective length of database: 8,277,491
effective search space: 5703191299
effective search space used: 5703191299
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)