Query psy8413
Match_columns 796
No_of_seqs 198 out of 247
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:09:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_C 80 kDa nuclear CAP bind 100.0 4E-188 1E-192 1664.6 74.0 766 24-796 2-771 (771)
2 1hu3_A EIF4GII; heat repeat, t 99.0 3.7E-09 1.2E-13 111.4 16.4 188 28-249 9-243 (260)
3 2vso_E Eukaryotic initiation f 98.9 6.6E-09 2.3E-13 110.9 13.2 193 26-248 32-283 (284)
4 3rk6_A Polyadenylate-binding p 98.4 1.6E-06 5.6E-11 89.7 13.2 176 27-208 16-216 (234)
5 2i2o_A EIF4G-like protein; pro 97.9 3.9E-05 1.3E-09 78.8 10.3 157 70-249 38-210 (224)
6 3uky_C Nuclear CAP-binding pro 97.0 0.00022 7.6E-09 48.4 1.5 25 1-25 3-32 (32)
7 1uw4_B UPF2, regulator of nons 96.8 0.017 5.7E-07 60.0 14.8 168 33-206 7-186 (248)
8 1ug3_A EIF4GI, eukaryotic prot 96.8 0.067 2.3E-06 58.0 20.2 289 323-627 13-332 (339)
9 1paq_A Translation initiation 95.9 0.028 9.7E-07 56.0 9.6 119 501-627 23-154 (189)
10 3ul0_C Nuclear CAP-binding pro 95.7 0.0056 1.9E-07 39.3 2.2 22 3-26 4-25 (26)
11 3d3m_A Eukaryotic translation 95.6 0.15 5.2E-06 49.6 13.4 118 504-628 4-142 (168)
12 3l6a_A Eukaryotic translation 95.3 0.074 2.5E-06 58.3 11.1 277 333-629 26-339 (364)
13 3jui_A Translation initiation 94.7 0.24 8.2E-06 48.9 11.7 119 502-628 16-147 (182)
14 2iu1_A EIF5, eukaryotic transl 89.1 2.3 7.9E-05 42.8 11.0 78 544-627 43-124 (208)
15 2ful_A EIF-5, eukaryotic trans 87.3 0.7 2.4E-05 45.4 5.7 77 544-627 50-130 (177)
16 3ukx_C Bimax2 peptide; arm rep 68.3 2.8 9.5E-05 27.3 2.0 8 17-24 20-27 (28)
17 4b89_A General negative regula 57.8 1.7E+02 0.0059 29.9 14.4 143 23-173 27-195 (249)
18 3eiq_C Programmed cell death p 49.5 1.1E+02 0.0037 33.1 11.8 152 50-225 50-209 (358)
19 2qk2_A LP04448P; mini spindles 47.5 1.8E+02 0.0062 28.3 12.6 107 54-168 82-193 (242)
20 2rg8_A Programmed cell death p 47.5 46 0.0016 31.9 7.6 103 117-222 52-162 (165)
21 2qk1_A Protein STU2; STU2P, XM 39.1 46 0.0016 33.6 6.6 32 108-139 144-175 (249)
22 2zu6_B Programmed cell death p 26.2 2.7E+02 0.0091 29.3 10.0 107 116-225 44-158 (307)
23 1paq_A Translation initiation 25.9 4.5E+02 0.015 25.3 11.0 90 63-153 57-155 (189)
24 1g6u_A Domain swapped dimer; d 24.9 1.2E+02 0.0041 22.1 4.6 21 694-714 25-45 (48)
25 1h2v_C 80 kDa nuclear CAP bind 21.0 1.2E+02 0.0043 36.1 6.8 89 49-138 306-402 (771)
26 1w63_A Adapter-related protein 20.1 2.5E+02 0.0086 32.0 9.1 85 27-113 363-448 (618)
No 1
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=100.00 E-value=3.7e-188 Score=1664.65 Aligned_cols=766 Identities=56% Similarity=0.996 Sum_probs=709.2
Q ss_pred CCCchhHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCCCchHHHHHHHHHhccCccc
Q psy8413 24 VPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNF 103 (796)
Q Consensus 24 ~~~~~~~~~~l~~~I~~ige~~~~s~e~~l~~La~~l~~d~~~~~~~i~~~l~~~v~e~P~K~p~yAtLVgllN~kn~~~ 103 (796)
++++.++.++|+++|+||||++++++++||++|+++|.++++++|+.|++++++||.++|+|+|+||||||++|+|+|+|
T Consensus 2 ~~~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~ 81 (771)
T 1h2v_C 2 TSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNF 81 (771)
T ss_dssp --------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHH
T ss_pred CCCcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhHHHHHHHHhhcccccccChhhHHHHHHHHHHhhhcCCCCccchhhHHHHHHhhchhc
Q psy8413 104 GGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWV 183 (796)
Q Consensus 104 g~~iv~~l~~~lq~~l~~~~w~~~kl~lrFLa~L~n~~Vi~~~sl~~ll~~ll~~a~e~~~~q~R~d~~vy~vL~~LP~~ 183 (796)
|++++++++.+|++++++|+|++||+++||||||+||+|+++++++++|+.|+++++|+++||+|+||+|||+|.+|||+
T Consensus 82 G~~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~ 161 (771)
T 1h2v_C 82 GGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV 161 (771)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHhhHHHHHHHHHHHHHHHhhcccccccccccccCCCCCChhhHHHHHHHHHHHHHhCCccccccCCCcchhhhhh
Q psy8413 184 GRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSRL 263 (796)
Q Consensus 184 G~~L~e~~~~~l~~ll~~i~~yl~~r~~~~~~ll~~~~~~~~~~~~d~l~~L~~qi~~l~~~~w~~~~i~rpy~~f~~~L 263 (796)
|++|++++++++++||++++.|+++|++.+++++++|+++.|++++++|++||+||+++++|||+++++||||..|++.|
T Consensus 162 G~~L~e~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~~l~~L~~ql~~lr~~~w~~~~iprp~~~f~~~l 241 (771)
T 1h2v_C 162 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSIL 241 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCCSCCCCGGGGGTTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCCchhhHHHHHHHHHHHHHHCCCCCcCCCchhhhccccc
Confidence 99999999999999999999999999998999999999989999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCCCCeeEEEeccCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhccCHHHHHHHHh
Q psy8413 264 SVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLL 343 (796)
Q Consensus 264 ~~a~~h~Lp~~~~p~~~~~~~y~~P~~~frlf~~~~~~~~~~~~~lP~~~sier~l~ee~i~Dii~~~~~nRkecA~~Ll 343 (796)
+++.+|+||++++|+|..+..||+|+++||+|+++++++| +++|+.++|||+|+|++++|||++|++||||||++|+
T Consensus 242 ~d~~~H~lp~~~~p~~~~~~~yp~p~~~f~if~~~d~~e~---~~~p~~~~idr~l~re~ildIi~~~~~nrkecA~~Ll 318 (771)
T 1h2v_C 242 CEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG---PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLV 318 (771)
T ss_dssp CGGGCBCCCCCCCCCCCTTCCCCCCCBCCCCCCGGGCTTS---SCCCCTTSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCcccccCCccceeeeccCCcccccc---ccCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence 9999999999999999889999999999999999999887 8999999999999999999999999999999999999
Q ss_pred cCC--CCCCchhHHHHHHHHHhhcCCCCCccchhHHHHHHHHhccCCCChhHHHHHHHHHHHhcCccccHHHHHHHHHHH
Q psy8413 344 KYN--MKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWF 421 (796)
Q Consensus 344 ~lp--~~~~~E~~ivEtIfs~lf~LP~p~~~~iyY~slLielCk~~P~~i~pv~~~Air~ly~~l~~mD~e~~~Rf~dWF 421 (796)
++| .++++||+|||||||+||+||+|+++.+|||+|++||||++|+++||+||+|||++|+++++||++|++||++||
T Consensus 319 ~l~~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwF 398 (771)
T 1h2v_C 319 SYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWF 398 (771)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHH
T ss_pred cCCCCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 999 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCcccchhhhhhhcCCCCCChHHHHHHHHHHHHhhcchHHHhhhCcccccccCCCCCCCCcccCCCCCCCCCc
Q psy8413 422 AYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPG 501 (796)
Q Consensus 422 S~hLSNF~F~W~W~eW~~~l~~~~~~Pk~~Fi~~~l~KeiRLSy~~rIk~~lPe~~~~llp~~p~p~fky~~e~~~~~p~ 501 (796)
|||||||+|+|+|+||++|++++..|||++||+++|+||+||||++||+++||++|++|+|++|.|+|+|++|+++++|+
T Consensus 399 ShhLSNF~f~W~W~eW~~~~e~~~~~p~r~Fik~ll~k~~RLSy~~rIk~~lP~~~~~llp~~p~p~f~y~~e~~~~~p~ 478 (771)
T 1h2v_C 399 SHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLPG 478 (771)
T ss_dssp HHHHTTTTTCCCGGGGGGGTTSCTTSHHHHHHHHHHHHHHHTSCHHHHHTTSCGGGGGGSCCCCCCCCTTSTTSCTTSTT
T ss_pred HHHHhcCCcCccHHHhHHhhcCCccCcHHHHHHHHHHHHHhhhhHHHHHHhCcHHHHhhCCCCCCCCceeCCccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCC--CCCChhHHHHHHHHHHhhccchHHhHHHHHHhHHHHHHhh
Q psy8413 502 FVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGA--DPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEH 579 (796)
Q Consensus 502 ~~~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~~~--~~~~~~~i~v~~q~ll~~GsKSfSH~~~~iery~~~Lk~l 579 (796)
++.|++|+++||+|+ +++||.++|++++++..+++++ .++|++++++|+||+|++|||||||++++|+||+++||++
T Consensus 479 ~~~a~~l~~~ir~k~-~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~GskS~SH~~~~lery~~~lk~l 557 (771)
T 1h2v_C 479 HSVALCLAVAFKSKA-TNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTL 557 (771)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHSTTCHHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHccC-CHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999887655433 4678899999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHhhCcCeeHHHHHHHHhCCCCChhhhhhhhcccCCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy8413 580 IGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRV 659 (796)
Q Consensus 580 ~~~~~~~q~~il~~v~~~W~~~~Q~~~iiidkll~~~iv~p~~Vv~w~F~~~~~~~~~~~~~Weil~~ti~kv~~rv~~~ 659 (796)
++ ++++|.+||++|++||++||||+++++|||++|+||+|.+||+|+|+++|+++|+++|+||||++|++||++||+++
T Consensus 558 ~~-~~~~q~~il~~v~~~W~~~~q~~~ividkll~~~iv~p~~Vv~w~f~~~~~~~~~~~~~weil~~ti~kv~~rv~~~ 636 (771)
T 1h2v_C 558 AE-SDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKI 636 (771)
T ss_dssp TS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCHHHHHHHHTSGGGTTTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHhcCCceEehHHHHHHhcCCCCHHHHHHHHcCchhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCCcccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC
Q psy8413 660 GKELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIFQRFIMILSEHLVRCDTDGV 739 (796)
Q Consensus 660 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~eqk~l~~~i~~~fv~~Lse~~~~~~~~~~ 739 (796)
+++++++|++++.+++++.++++++. ++++++.++++|++|++|++++++||+||+.+||+|+++|++|+++|+++|+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~e~~l~~~~~~~k~l~~~~~~~fv~~l~~~~~~~~~~~~ 714 (771)
T 1h2v_C 637 QKELEEAKEKLARQHKRRSDDDDRSS--DRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGT 714 (771)
T ss_dssp HHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhccCC
Confidence 99999999999776555433222222 4567888899999999999999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhccC
Q psy8413 740 DFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALNA 796 (796)
Q Consensus 740 ~~~~~W~~~~~gr~~~~~~~~~~~~~~~~~~L~~~~ft~~~d~~i~~vf~qf~al~~ 796 (796)
|++|+||+|++||||||+|+|+++|++|++||++++||+|+||+|++||+||+||||
T Consensus 715 ~~~~~W~~~~~gr~~~~~~~~~~~~~~~~~~l~~~~f~~~~d~~i~~v~~~f~~l~~ 771 (771)
T 1h2v_C 715 SVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 771 (771)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHTSCTTSCHHHHHHHHHHHHTTC
T ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999996
No 2
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=99.02 E-value=3.7e-09 Score=111.45 Aligned_cols=188 Identities=15% Similarity=0.266 Sum_probs=145.4
Q ss_pred hhHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHH-hh---HhhHHHHHHHHHHHHHhCCCCchHHHHHHHHHhc-cCc-
Q psy8413 28 QELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET-DL---ATYRVKILRILTDCATKYPEKCCIYTTLVGLLNA-KNY- 101 (796)
Q Consensus 28 ~~~~~~l~~~I~~ige~~~~s~e~~l~~La~~l~~-d~---~~~~~~i~~~l~~~v~e~P~K~p~yAtLVgllN~-kn~- 101 (796)
..+.++++..|-++-+. +++.++..|.. .+ ..+++ +++.++.-++..|..++.||.|+..+|. +-|
T Consensus 9 ~~l~r~v~giLNKLT~~-------nf~~i~~ql~~~~i~~~~~l~~-vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~ 80 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQ-------MFNQLMKQVSGLTVDTEERLKG-VIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPM 80 (260)
T ss_dssp HHHHHHHHHHHTCSSCC-------CHHHHHHHHTTCCCCSHHHHHH-HHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHhhCCHH-------HHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCc
Confidence 45666677777666643 66666666642 11 12444 6888888889999999999999999998 333
Q ss_pred --------ccHHHHHHHHHHHHHHHHhc--------------------------------CChhhHHHHHHHHhhccccc
Q psy8413 102 --------NFGGEFVELMVKTFKDALKN--------------------------------CQWNAARYALRFLADLVNCH 141 (796)
Q Consensus 102 --------~~g~~iv~~l~~~lq~~l~~--------------------------------~~w~~~kl~lrFLa~L~n~~ 141 (796)
.|++.+++++...|+..... ...+++...+||+|+|++.+
T Consensus 81 ~~~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~ 160 (260)
T 1hu3_A 81 ADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLK 160 (260)
T ss_dssp --------CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTT
T ss_pred ccCCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 48999999999999987632 12456789999999999999
Q ss_pred ccChhhHHHHHHHHHHhhhcCCCCccchhhHHHHHHhhchhccHHhHHh-hHHHHHHHHHHHHHHHhhcccccccccccc
Q psy8413 142 VISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEK-KEQALALLLLNIELYLNKRSKKHVAALQVW 220 (796)
Q Consensus 142 Vi~~~sl~~ll~~ll~~a~e~~~~q~R~d~~vy~vL~~LP~~G~~L~e~-~~~~l~~ll~~i~~yl~~r~~~~~~ll~~~ 220 (796)
|++..-+++++..|+...+|+ -+.|++..|--+|+.|... .+..++.++++++.++....
T Consensus 161 ~l~~~i~~~~l~~Ll~~~~e~---------~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~---------- 221 (260)
T 1hu3_A 161 MLTEAIMHDCVVKLLKNHDEE---------SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERK---------- 221 (260)
T ss_dssp CSCHHHHHHHHHHHHHSCSHH---------HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCS----------
T ss_pred CCCHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCC----------
Confidence 999999999999999865444 4599999999999999873 45789999999998653211
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHhCCccc
Q psy8413 221 SSDKPHPQEEYLDCLWAQIVKLRQDNWTD 249 (796)
Q Consensus 221 ~~~~~~~~~d~l~~L~~qi~~l~~~~w~~ 249 (796)
....+..+...|-.|++|+|..
T Consensus 222 -------ls~Rirfmi~~l~dLR~~~W~~ 243 (260)
T 1hu3_A 222 -------TSSRIRFMLQDVIDLRLCNWVS 243 (260)
T ss_dssp -------SCHHHHHHHHHHHHHHHTTTCC
T ss_pred -------CCHHHHHHHHHHHHHHHcCCCC
Confidence 1246788888899999999974
No 3
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=98.91 E-value=6.6e-09 Score=110.87 Aligned_cols=193 Identities=16% Similarity=0.228 Sum_probs=142.5
Q ss_pred CchhHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHh--------h-HhhHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q psy8413 26 ENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETD--------L-ATYRVKILRILTDCATKYPEKCCIYTTLVGLL 96 (796)
Q Consensus 26 ~~~~~~~~l~~~I~~ige~~~~s~e~~l~~La~~l~~d--------~-~~~~~~i~~~l~~~v~e~P~K~p~yAtLVgll 96 (796)
+...+.++++..|-++-.. +++.++..|..- - ..+++ ++++++.-++..|+.++.||.|...+
T Consensus 32 ~~e~l~r~vkgiLNKLT~~-------nf~~i~~ql~~~~~~~~~~~~~~~l~~-vi~~If~kA~~ep~fs~~YA~Lc~~l 103 (284)
T 2vso_E 32 DKDEVERKMKSLLNKLTLE-------MFDAISSEILAIANISVWETNGETLKA-VIEQIFLKACDEPHWSSMYAQLCGKV 103 (284)
T ss_dssp CHHHHHHHHHHHHHSCCST-------THHHHHHHHHHHHHGGGGCSBCHHHHH-HHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCCHH-------HHHHHHHHHHHHHhhccccCcHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 4567788888888888654 444455444321 1 22344 68888899999999999999999999
Q ss_pred hccCc-c--------------cHHHHHHHHHHHHHHHHh------------------------cCChhhHHHHHHHHhhc
Q psy8413 97 NAKNY-N--------------FGGEFVELMVKTFKDALK------------------------NCQWNAARYALRFLADL 137 (796)
Q Consensus 97 N~kn~-~--------------~g~~iv~~l~~~lq~~l~------------------------~~~w~~~kl~lrFLa~L 137 (796)
+.+-+ + |++.+++++...|+.... ...++++...+||+|+|
T Consensus 104 ~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeL 183 (284)
T 2vso_E 104 VKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFL 183 (284)
T ss_dssp HHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 98643 2 446788888888877431 12345677899999999
Q ss_pred ccccccChhhHHHHHHHHHHhhhcCCCCccchhhHHHHHHhhchhccHHhHHhh----------HHHHHHHHHHHHHHHh
Q psy8413 138 VNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKK----------EQALALLLLNIELYLN 207 (796)
Q Consensus 138 ~n~~Vi~~~sl~~ll~~ll~~a~e~~~~q~R~d~~vy~vL~~LP~~G~~L~e~~----------~~~l~~ll~~i~~yl~ 207 (796)
++.+|++..-+.+++..|+....+ .| .+.-+.|++..|--+|+.|.... +..++.++++++..+.
T Consensus 184 yk~~~l~~~i~~~ci~~LL~~~~~--~p---~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~ 258 (284)
T 2vso_E 184 YRLNLLTGKMMFECFRRLMKDLTD--SP---SEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQ 258 (284)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHS--CC---CHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHT
T ss_pred HhccCCcHHHHHHHHHHHhccCCC--CC---CHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999973211 11 34456999999999999998765 4678999999998542
Q ss_pred hcccccccccccccCCCCCChhhHHHHHHHHHHHHHhC-Ccc
Q psy8413 208 KRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQD-NWT 248 (796)
Q Consensus 208 ~r~~~~~~ll~~~~~~~~~~~~d~l~~L~~qi~~l~~~-~w~ 248 (796)
.. .....+..+...|-.|++| +|.
T Consensus 259 ~~-----------------~ls~RirFml~dlidLR~n~~W~ 283 (284)
T 2vso_E 259 TA-----------------KISSRIKFKLIDIKELRHDKNWN 283 (284)
T ss_dssp TS-----------------CCCHHHHHHHHHHHHHHHTSTTC
T ss_pred CC-----------------CCCHHHHHHHHHHHHHhcccCCC
Confidence 21 1125788888999999997 996
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=98.42 E-value=1.6e-06 Score=89.75 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=128.9
Q ss_pred chhHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHH--hhHhhHHHHHHHHHHHHHhCCCCchHHHHHHHHHhccC---c
Q psy8413 27 NQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET--DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKN---Y 101 (796)
Q Consensus 27 ~~~~~~~l~~~I~~ige~~~~s~e~~l~~La~~l~~--d~~~~~~~i~~~l~~~v~e~P~K~p~yAtLVgllN~kn---~ 101 (796)
..++.++++..+-++-+++ ..++.-++.+...+.. +.++....+++++++-++..|..++.||-|...++.+- |
T Consensus 16 ~~~l~r~v~~iLNkLT~~p-~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~~ 94 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQP-GSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISP 94 (234)
T ss_dssp --CHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHccCCh-hhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCCC
Confidence 3568889999999998542 2244333333333221 22456778899999999999999999999999998742 2
Q ss_pred ---ccHHHHHHHHHHHHHHHH--hcCC---hhhHHHHHHHHhhcccc--------cccChhhHHHHHHHHHHhhhcCCCC
Q psy8413 102 ---NFGGEFVELMVKTFKDAL--KNCQ---WNAARYALRFLADLVNC--------HVISTNSLLQLLENMLDASKEDGVP 165 (796)
Q Consensus 102 ---~~g~~iv~~l~~~lq~~l--~~~~---w~~~kl~lrFLa~L~n~--------~Vi~~~sl~~ll~~ll~~a~e~~~~ 165 (796)
.|++.++.++...|+..- ..++ .+++...+||+|+|++. +|++..-+...+..|+....+. |
T Consensus 95 ~~~~Fr~lLL~rcQ~eFe~~~~~~~~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~~~--p 172 (234)
T 3rk6_A 95 QSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSN--P 172 (234)
T ss_dssp TTCCHHHHHHHHHHHHHTTHHHHTSSCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEECCHHHHHHHHHHHHHHHHS--C
T ss_pred chhHHHHHHHHHHHHHHHhhHHhhhccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHhccCC--C
Confidence 599999999999998764 4455 46788899999999987 7888887655555555543211 1
Q ss_pred ccchhhHHHHHHhhchhccHHhHH----hhHHHHHHHHHHHHHHHhh
Q psy8413 166 NVRKDWYVYAVLSCLPWVGRELYE----KKEQALALLLLNIELYLNK 208 (796)
Q Consensus 166 q~R~d~~vy~vL~~LP~~G~~L~e----~~~~~l~~ll~~i~~yl~~ 208 (796)
.|.-+.|+...|--+|+.|-+ +.+..++.++++++..+..
T Consensus 173 ---~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~ 216 (234)
T 3rk6_A 173 ---MDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLD 216 (234)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhC
Confidence 234559999999999999986 5567899999999997654
No 5
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=97.89 E-value=3.9e-05 Score=78.85 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHH-HHhcc-----CcccHHHHHHHHHHHHHHH--HhcCChhhHHHHHHHHhhcccc-
Q psy8413 70 KILRILTDCATKYPEKCCIYTTLVG-LLNAK-----NYNFGGEFVELMVKTFKDA--LKNCQWNAARYALRFLADLVNC- 140 (796)
Q Consensus 70 ~i~~~l~~~v~e~P~K~p~yAtLVg-llN~k-----n~~~g~~iv~~l~~~lq~~--l~~~~w~~~kl~lrFLa~L~n~- 140 (796)
.+++.+++=|+..|+..+.||-|.. +.+.. ...|-+.+++++...|+.- +.....++....+||+|.|...
T Consensus 38 ~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~~ee~~~~~k~r~lG~i~FIgELf~~l 117 (224)
T 2i2o_A 38 KVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETRKRSTQEWVCLVSFICNIFDYL 117 (224)
T ss_dssp HHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHChHHHHHHHHHHHhHHHHHHHHHHhHh
Confidence 4667788888899999999999998 44442 2336666666666655542 2223367778899999999988
Q ss_pred ---cc--cC-hhhHHHHHHHHHHhhhcCCCCccchhhHHHHHHhhchhccHHhHHhhHHHHHHHHHHHHH-HHhhccccc
Q psy8413 141 ---HV--IS-TNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRELYEKKEQALALLLLNIEL-YLNKRSKKH 213 (796)
Q Consensus 141 ---~V--i~-~~sl~~ll~~ll~~a~e~~~~q~R~d~~vy~vL~~LP~~G~~L~e~~~~~l~~ll~~i~~-yl~~r~~~~ 213 (796)
++ +. ..-+.+.+..|+.... .| .+.-+.|+...|.-+|+.|....+..++.++++++. ++....
T Consensus 118 ~~~~~~~~~l~~i~~~cl~~Ll~~~~---~p---~Ee~lEcl~~LL~tvG~~Ld~~~~~~md~~f~~l~~~l~~~~~--- 188 (224)
T 2i2o_A 118 KVNNMPMVALVHPVYDCLFRLAQSDA---LK---NEEEVDCLVLQLHRIGDQLEKMNVQLMDELFNLLRDGFLLQED--- 188 (224)
T ss_dssp CBTTBCCGGGHHHHHHHHHHHTSHHH---HT---SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC---
T ss_pred cccCcchHHHHHHHHHHHHHHhccCC---CC---CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCcC---
Confidence 64 33 3457777888776421 11 234568999999999999999888999999999998 553211
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHHHHhCCccc
Q psy8413 214 VAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTD 249 (796)
Q Consensus 214 ~~ll~~~~~~~~~~~~d~l~~L~~qi~~l~~~~w~~ 249 (796)
....+-.++..|-.|++++|..
T Consensus 189 --------------ls~RiRfml~dlieLR~~~W~~ 210 (224)
T 2i2o_A 189 --------------LSSMGRLLLLEILEFRAGGWKL 210 (224)
T ss_dssp --------------CCHHHHHHHHHHHHHHHTTSCC
T ss_pred --------------CCHHHHHHHHHHHHHHHCCCCC
Confidence 1246777888899999999984
No 6
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00022 Score=48.40 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCCc-h--hhhcc--cccCCC
Q psy8413 1 MSNRRRPHEEDDG-Y--ERAYK--KRRRVP 25 (796)
Q Consensus 1 m~~rrR~~d~~d~-~--d~~~~--kr~r~~ 25 (796)
|++|+|++|+||| | |++|+ ||+|++
T Consensus 3 Mf~~KRr~dfd~ddgYrDfrPR~pKRQR~P 32 (32)
T 3uky_C 3 MFNRKRRGDFDEDENYRDFRPRMPKRQRIP 32 (32)
T ss_pred cccccccccCccccccccccccccccccCC
Confidence 8999999988653 3 67666 888874
No 7
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=96.83 E-value=0.017 Score=59.96 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=115.3
Q ss_pred HHHHHHHhhcCCCCcchhhhHHHHHHHHH---HhhHhhHHHHHHHHHHHHHhCCCCchHHHHHHHHHhccCcccHHHHHH
Q psy8413 33 RFEVLIVKVGERSTTSLESHLDGLAKVLE---TDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVE 109 (796)
Q Consensus 33 ~l~~~I~~ige~~~~s~e~~l~~La~~l~---~d~~~~~~~i~~~l~~~v~e~P~K~p~yAtLVgllN~kn~~~g~~iv~ 109 (796)
=++.+|..-=.+ .+++.+.+.|. .+.++..+.+++.|.+.-.-.=.-+|..|.|++=+....++||-.||+
T Consensus 7 fir~Li~~~L~~------~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD 80 (248)
T 1uw4_B 7 YVRKLLYKDLSK------VTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVD 80 (248)
T ss_dssp HHHHHHHTTCST------TSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHccc------ccHHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHH
Confidence 377777433332 25667777776 344555555666655432222235788999999999999999999999
Q ss_pred HHHHHHHHHHhcCChh---hHHHHHHHHhhcccccccChhhHHHHHHHHHHhhhc-CCCC---ccchhh-HHHHHHhhch
Q psy8413 110 LMVKTFKDALKNCQWN---AARYALRFLADLVNCHVISTNSLLQLLENMLDASKE-DGVP---NVRKDW-YVYAVLSCLP 181 (796)
Q Consensus 110 ~l~~~lq~~l~~~~w~---~~kl~lrFLa~L~n~~Vi~~~sl~~ll~~ll~~a~e-~~~~---q~R~d~-~vy~vL~~LP 181 (796)
.+.+.++..|..++.. +--..+||||.|.|.++++...++++|-.|+..-.. ++.| ..-.|. =+.++...|-
T Consensus 81 ~vlE~Ir~gLE~n~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FRIrLvCtLL~ 160 (248)
T 1uw4_B 81 GVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILD 160 (248)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchhHHHHHHHHH
Confidence 9999999999987653 444678999999999999999999999999985322 1111 112332 3556777777
Q ss_pred hccHHhHHhh-HHHHHHHHHHHHHHH
Q psy8413 182 WVGRELYEKK-EQALALLLLNIELYL 206 (796)
Q Consensus 182 ~~G~~L~e~~-~~~l~~ll~~i~~yl 206 (796)
-||+.+.... ..-++..+.-++-|+
T Consensus 161 tcg~~f~~~~~~kkLd~fL~ffQ~Y~ 186 (248)
T 1uw4_B 161 TCGQYFDRGSSKRKLDCFLVYFQRYV 186 (248)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 7787654432 345667777777776
No 8
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=96.81 E-value=0.067 Score=57.98 Aligned_cols=289 Identities=13% Similarity=0.142 Sum_probs=187.1
Q ss_pred HHHHHHHHh--ccCHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCCccchhHHHHHHHHhccCCCChh-HHHHHHH
Q psy8413 323 HLLQIIEMN--YFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMP-QVLAQAT 399 (796)
Q Consensus 323 ~i~Dii~~~--~~nRkecA~~Ll~lp~~~~~E~~ivEtIfs~lf~LP~p~~~~iyY~slLielCk~~P~~i~-pv~~~Ai 399 (796)
-+..+|.-| ..|-+|+++-+-+++.+. +-+-+|..++...+.-.. .---.=..||..|++. +.+. .-+.+++
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~-~~~~~v~~~i~~~le~~~--~~re~~~~Ll~~L~~~--~~is~~~~~~Gf 87 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPS-LLFIFVRHGVESTLERSA--IAREHMGQLLHQLLCA--GHLSTAQYYQGL 87 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGG-GHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHT--TSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHC--CCCCHHHHHHHH
Confidence 334444433 357889999998887433 567778888888777432 2223557788889874 3444 3599999
Q ss_pred HHHHhcCcc--ccHH-HHHHHHHHHHHHhhccCCc--ccchhhhhhhc-CCCCCChHHHHHHHHHHHHhhcchHHHhhhC
Q psy8413 400 VILFMRIES--MNTA-CFDRFVAWFAYHLSNFQFQ--WSWEDWESALK-LDLEHPKPKFIHEVLNKCVRLSYHQRIKEIV 473 (796)
Q Consensus 400 r~ly~~l~~--mD~e-~~~Rf~dWFS~hLSNF~F~--W~W~eW~~~l~-~~~~~Pk~~Fi~~~l~KeiRLSy~~rIk~~l 473 (796)
..+++.++. +|+- ....+....+.=+++=... +-|+ ..+. +.+.-....|+..++....+-.-.+++.+..
T Consensus 88 ~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~---~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~ 164 (339)
T 1ug3_A 88 YEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFR---EITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLW 164 (339)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHH---HHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHH---HHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999976 4544 3444445545444441111 1111 1110 1122356799999999999888888876532
Q ss_pred c---ccccccCCCCC---------CCCcccCCCCC----CCCCchHHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCC
Q psy8413 474 P---PQFAPLLPLKP---------EPHFKYNQEGG----EHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDED 537 (796)
Q Consensus 474 P---e~~~~llp~~p---------~p~fky~~e~~----~~~p~~~~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~ 537 (796)
= =.+..++|+.+ +-.|-+....+ ...|...+-++|...++.+. +++++..|+++.....
T Consensus 165 ~~s~l~l~~f~P~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~-~~~~i~~~i~~~~~~~---- 239 (339)
T 1ug3_A 165 REAGLSWKEFLPEGQDIGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGS-SNQRVFDWIEANLSEQ---- 239 (339)
T ss_dssp HHTTCCGGGTSCTTCCHHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHSCHH----
T ss_pred HHcCCCHHHhCCCchhHHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCC-CHHHHHHHHHhcCChh----
Confidence 2 12667777643 11122221110 11234467788999999998 9999999999743220
Q ss_pred CCCCCChhHHHHHHHHHHhhc---cchHHhHHHHHHhHHHHHHhhhCCChHHHHHHHHHHHHHHhhCcC---eeHHHHHH
Q psy8413 538 GADPINPLKIDVFTQVLLYLG---SKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQ---MMAVLIDK 611 (796)
Q Consensus 538 ~~~~~~~~~i~v~~q~ll~~G---sKSfSH~~~~iery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~Q---~~~iiidk 611 (796)
.-.++..+..++++++..- ..+.......+.+|.++|+..+. +++.|..+|.++..++.++.+ +..-++..
T Consensus 240 --~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~pll~~~~~-~~~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~ 316 (339)
T 1ug3_A 240 --QIVSNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLC-DEQKELQALYALQALVVTLEQPPNLLRMFFDA 316 (339)
T ss_dssp --HHTCHHHHHHHHHHHHHHTEECSSSCEECHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred --hCChHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 0012567888888888641 22333344689999999999996 889999999999999976543 33446788
Q ss_pred HHhCCCCChhhhhhhh
Q psy8413 612 MLKTQLLHCSSVANWI 627 (796)
Q Consensus 612 ll~~~iv~p~~Vv~w~ 627 (796)
|....||+-.+|..|-
T Consensus 317 LYd~dVi~Eeail~W~ 332 (339)
T 1ug3_A 317 LYDEDVVKEDAFYSWE 332 (339)
T ss_dssp HHHTTSSCHHHHHHHT
T ss_pred HhCcchhhHHHHHHHH
Confidence 9999999999999994
No 9
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=95.88 E-value=0.028 Score=55.98 Aligned_cols=119 Identities=9% Similarity=0.040 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCCCCChhHHHHHHHHHHhh-------ccc-hHHhHHHHHHhH
Q psy8413 501 GFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYL-------GSK-SFSHSFAALSKF 572 (796)
Q Consensus 501 ~~~~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~~~~~~~~~~i~v~~q~ll~~-------GsK-SfSH~~~~iery 572 (796)
.+++.+.|...++.+. +.+++.-.|++++-... .+ ..-.+.+++.+++.. +.. ....+...|.+|
T Consensus 23 ~~Ev~~sL~r~~~e~~-~~d~iilEin~lr~a~n-----~s-~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (189)
T 1paq_A 23 EKEGIATVERAMENNH-DLDTALLELNTLRMSMN-----VT-YHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQW 95 (189)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTT-----CC-HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcC-----CC-HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 4568888999999998 99999999987643311 11 134556666666632 222 445567889999
Q ss_pred HHHHHhhhCCChHHHHHHHHHHHHHHh--hCcCe---eHHHHHHHHhCCCCChhhhhhhh
Q psy8413 573 YKVLKEHIGHTEESQSYVLKSLFELWH--DHQQM---MAVLIDKMLKTQLLHCSSVANWI 627 (796)
Q Consensus 573 ~~~Lk~l~~~~~~~q~~il~~v~~~W~--~~~Q~---~~iiidkll~~~iv~p~~Vv~w~ 627 (796)
.++|+.++. +...|..+|.++-.|.. ++|.. ...|+..|....||+-.+|+.|-
T Consensus 96 ~~ll~~~~~-~~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~ 154 (189)
T 1paq_A 96 GLLFKRQAF-DEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWW 154 (189)
T ss_dssp GGGGGGTCC-SHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHc-CcHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHH
Confidence 999999997 89999999999999998 88883 44567889999999999999995
No 10
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=95.69 E-value=0.0056 Score=39.28 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=16.7
Q ss_pred CCCCCCCCCCchhhhcccccCCCC
Q psy8413 3 NRRRPHEEDDGYERAYKKRRRVPE 26 (796)
Q Consensus 3 ~rrR~~d~~d~~d~~~~kr~r~~~ 26 (796)
+|||++|.+|+| .++|||++++
T Consensus 4 srrrhsdendgg--q~hkrr~ts~ 25 (26)
T 3ul0_C 4 SRRRHSDENDGG--QPHKRRKTSD 25 (26)
T ss_dssp CCCCCTTSCSSC--CCSCCCCCCC
T ss_pred cccccccccCCC--Cccccccccc
Confidence 377888876655 6889999875
No 11
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=95.57 E-value=0.15 Score=49.62 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCCCCChhHHHHHHHHHHhh----cc--chH------------HhH
Q psy8413 504 YAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYL----GS--KSF------------SHS 565 (796)
Q Consensus 504 ~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~~~~~~~~~~i~v~~q~ll~~----Gs--KSf------------SH~ 565 (796)
+-++|.++|+..+ ++++|..++++--+.. ..-.+..+..++++++.. ++ +.. ..+
T Consensus 4 ~~~~L~~~l~~~~-~~~~i~~~i~en~~~~------~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~ 76 (168)
T 3d3m_A 4 LEKELLKQIKLDP-SPQTIYKWIKDNISPK------LHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQE 76 (168)
T ss_dssp HHHHHHHHHHHCC-CHHHHHHHHHHHSCGG------GGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHhcCCcc------cCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHH
Confidence 5678899999998 9999999998632211 001234555555555532 12 222 455
Q ss_pred HHHHHhHHHHHHhhhCCChHHHHHHHHHHHHHHhhCcCe---eHHHHHHHHhCCCCChhhhhhhhc
Q psy8413 566 FAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQM---MAVLIDKMLKTQLLHCSSVANWIF 628 (796)
Q Consensus 566 ~~~iery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~Q~---~~iiidkll~~~iv~p~~Vv~w~F 628 (796)
...|.+|.++|+.++.++...|..+|.++-.|...+++. ...++..|....||+-.+|+.|-=
T Consensus 77 ~~~l~~~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~ 142 (168)
T 3d3m_A 77 KQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKE 142 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHh
Confidence 688999999999999845899999999999999877653 356778888999999999999974
No 12
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=95.30 E-value=0.074 Score=58.30 Aligned_cols=277 Identities=12% Similarity=0.089 Sum_probs=161.8
Q ss_pred cCHHHHHHHHhcCCCCCCchhHHHHHHHHHhhcCCCCCccchhHHHHHHHHhccCCCCh-hHHHHHHHHHHHhcCccccH
Q psy8413 333 FERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTM-PQVLAQATVILFMRIESMNT 411 (796)
Q Consensus 333 ~nRkecA~~Ll~lp~~~~~E~~ivEtIfs~lf~LP~p~~~~iyY~slLielCk~~P~~i-~pv~~~Air~ly~~l~~mD~ 411 (796)
.|=+|+++-+-++..+-.+-+.+|..+.+..+.-- +..+ -.-+.||..||+.. .+ +.-+.+++..+++.++.|-+
T Consensus 26 ~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~-~~~r-e~~~~LL~~L~~~~--~ls~~~~~~Gf~~lle~l~Dl~i 101 (364)
T 3l6a_A 26 GNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRS-DEDK-EKASSLISLLKQEG--IATSDNFMQAFLNVLDQCPKLEV 101 (364)
T ss_dssp CCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSC-HHHH-HHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCC-hHHH-HHHHHHHHHHHHCC--CCCHHHHHHHHHHHHhhChHhcc
Confidence 46677777777765433344555666666555432 1122 34567778888742 23 34588888888888876542
Q ss_pred H--H-HHHHHHHHHHHhhc----cCCcccchhhhhhhcCCCCCChHHHHHHHHHHHHhhcchHHHhhhCcc---cccccC
Q psy8413 412 A--C-FDRFVAWFAYHLSN----FQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPP---QFAPLL 481 (796)
Q Consensus 412 e--~-~~Rf~dWFS~hLSN----F~F~W~W~eW~~~l~~~~~~Pk~~Fi~~~l~KeiRLSy~~rIk~~lPe---~~~~ll 481 (796)
+ . -.-++..++.=+.. +.+-++ . +......| |+-.++....+..-.+.+.+.+-+ .+..++
T Consensus 102 DiP~a~~~la~f~ar~i~~~~l~~~~l~~-----~-l~~G~~~~---l~l~vl~~~~k~~G~~~l~~l~~~sgl~l~~Fl 172 (364)
T 3l6a_A 102 DIPLVKSYLAQFAARAIISELVSISELAQ-----P-LESGTHFP---LFLLCLQQLAKLQDREWLTELFQQSKVNMQKML 172 (364)
T ss_dssp HCTTHHHHHHHHHHHHHHTTSSCHHHHHH-----H-HGGGTTTT---HHHHHHHHHHHHSCHHHHHHHHHHHTCCSGGGS
T ss_pred ccccHHHHHHHHHHHHHHcCCCCHHHHHH-----H-hcccchHH---HHHHHHHHHHHhcCHHHHHHHHHHcCCCHHHhC
Confidence 2 1 11122222221111 111111 0 11122223 444555555554444443332211 355667
Q ss_pred CCCCCCCccc----CCCCC-CCCCchHHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCCCCChhHHHHHHHHHHh
Q psy8413 482 PLKPEPHFKY----NQEGG-EHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLY 556 (796)
Q Consensus 482 p~~p~p~fky----~~e~~-~~~p~~~~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~~~~~~~~~~i~v~~q~ll~ 556 (796)
|+.......+ ...+- .-.|...+.++|.++|+..+ ++++|..|+++.-.+. .-.++..|.++|+|+|.
T Consensus 173 Pe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~-~~~~i~~wik~n~~~~------~~~~~~fir~L~t~v~~ 245 (364)
T 3l6a_A 173 PEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDP-SPQTIYKWIKDNISPK------LHVDKGFVNILMTSFLQ 245 (364)
T ss_dssp CGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHSCHH------HHTCHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCC-ChHHHHHHHHHhCCcc------cCCCHHHHHHHHHHHHH
Confidence 6631111000 00000 01255789999999999998 9999999999743221 01235788888898886
Q ss_pred hc----c-------------chHH-hHHHHHHhHHHHHHhhhCCChHHHHHHHHHHHHHHhh--Cc-CeeHHHHHHHHhC
Q psy8413 557 LG----S-------------KSFS-HSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHD--HQ-QMMAVLIDKMLKT 615 (796)
Q Consensus 557 ~G----s-------------KSfS-H~~~~iery~~~Lk~l~~~~~~~q~~il~~v~~~W~~--~~-Q~~~iiidkll~~ 615 (796)
.. + |.-. -....|.+|..+|+.++.+..+.|..+|.++-++... +| .+..-++..|...
T Consensus 246 ~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~~il~~LYd~ 325 (364)
T 3l6a_A 246 YISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDM 325 (364)
T ss_dssp HHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHT
T ss_pred HHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh
Confidence 32 1 1111 1235799999999999984456799999999999964 34 4467788899999
Q ss_pred CCCChhhhhhhhcc
Q psy8413 616 QLLHCSSVANWIFS 629 (796)
Q Consensus 616 ~iv~p~~Vv~w~F~ 629 (796)
.||+-.+|..|-=+
T Consensus 326 DileEe~il~W~~~ 339 (364)
T 3l6a_A 326 EIIEEEAFLAWKED 339 (364)
T ss_dssp TSSCHHHHHHHHHC
T ss_pred hhhhhHHHHHHHhc
Confidence 99999999999743
No 13
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=94.65 E-value=0.24 Score=48.95 Aligned_cols=119 Identities=13% Similarity=0.221 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHhhCCCCCCCCCCCCCCChhHHHHHHHHHHhhc-----c-----chHHhHHHHHHh
Q psy8413 502 FVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLG-----S-----KSFSHSFAALSK 571 (796)
Q Consensus 502 ~~~a~~l~~~i~~k~~~~eev~~~l~~i~~~~~~~~~~~~~~~~~i~v~~q~ll~~G-----s-----KSfSH~~~~ier 571 (796)
+++...|...+++.. +.+.+.-.|++++-... .+. .-++..++.+++... + .-..-+...|.+
T Consensus 16 ~Ev~~sl~ra~~e~~-~~d~~~LEinslr~a~N-----~s~-~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~ 88 (182)
T 3jui_A 16 NEVLGTLQRGKEENI-SCDNLVLEINSLKYAYN-----ISL-KEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKA 88 (182)
T ss_dssp HHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHTT-----CCH-HHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHhC-----cCH-HHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHH
Confidence 457788889999988 99999888887543210 111 346777777777652 1 122345678899
Q ss_pred HHHHHHhhhCCChHHHHHHHHHHHHHHhhCcCe---eHHHHHHHHhCCCCChhhhhhhhc
Q psy8413 572 FYKVLKEHIGHTEESQSYVLKSLFELWHDHQQM---MAVLIDKMLKTQLLHCSSVANWIF 628 (796)
Q Consensus 572 y~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~Q~---~~iiidkll~~~iv~p~~Vv~w~F 628 (796)
|.++|+.++. +...|..+|.++-.+...+++. ...|+..|....||+-.+|+.|-=
T Consensus 89 ~~~ll~~~~~-~~~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~ 147 (182)
T 3jui_A 89 WSPVFRNYIK-RAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFS 147 (182)
T ss_dssp HHHHHHHHCC-SHHHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHT
T ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHH
Confidence 9999999998 8899999999999999888863 456888899999999999999983
No 14
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=89.10 E-value=2.3 Score=42.79 Aligned_cols=78 Identities=19% Similarity=0.315 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhhccchHHhHHHHHHhHHHHHHhhhCCChHHHHHHHHHHHHHHhhCc----CeeHHHHHHHHhCCCCC
Q psy8413 544 PLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQ----QMMAVLIDKMLKTQLLH 619 (796)
Q Consensus 544 ~~~i~v~~q~ll~~GsKSfSH~~~~iery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~----Q~~~iiidkll~~~iv~ 619 (796)
.....+++|+++. ..+...|.+|..+|+.++..+...|..+|.++-.|...+. .+...|+..|....||+
T Consensus 43 ~~~~~vl~e~lf~------~~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIle 116 (208)
T 2iu1_A 43 AMGPLVLTEVLFN------EKIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLE 116 (208)
T ss_dssp GGHHHHHHHHHCS------TTHHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhh
Confidence 3456677888772 1466889999999999997577899999999999875543 35566789999999999
Q ss_pred hhhhhhhh
Q psy8413 620 CSSVANWI 627 (796)
Q Consensus 620 p~~Vv~w~ 627 (796)
-.+|+.|-
T Consensus 117 EEaIl~W~ 124 (208)
T 2iu1_A 117 EEVIISWS 124 (208)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999995
No 15
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=87.32 E-value=0.7 Score=45.43 Aligned_cols=77 Identities=9% Similarity=0.195 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhhccchHHhHHHHHHhHHHHHHhhhCCChHHHHHHHHHHHHHHh-hCcCe---eHHHHHHHHhCCCCC
Q psy8413 544 PLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWH-DHQQM---MAVLIDKMLKTQLLH 619 (796)
Q Consensus 544 ~~~i~v~~q~ll~~GsKSfSH~~~~iery~~~Lk~l~~~~~~~q~~il~~v~~~W~-~~~Q~---~~iiidkll~~~iv~ 619 (796)
.-++.+++++|+. .-+...|.+|..+|+.++. +...|..+|.++-.|-. +++.. ...|+..|....||+
T Consensus 50 ~~~~~vl~~~lf~------~~i~~~l~k~~~lL~~~~~-~~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIle 122 (177)
T 2ful_A 50 PKIGCVLAQCLFD------EDIVNEIAEHNAFFTKILV-TPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIIS 122 (177)
T ss_dssp TTHHHHHHHHSCS------TTHHHHTTSCHHHHHHHCC-SHHHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhh
Confidence 4588888999873 2356789999999999997 88999999999999994 67664 355678899999999
Q ss_pred hhhhhhhh
Q psy8413 620 CSSVANWI 627 (796)
Q Consensus 620 p~~Vv~w~ 627 (796)
-.+|+.|-
T Consensus 123 EeaIl~W~ 130 (177)
T 2ful_A 123 EEEIMRFG 130 (177)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999995
No 16
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=68.32 E-value=2.8 Score=27.35 Aligned_cols=8 Identities=63% Similarity=0.812 Sum_probs=4.7
Q ss_pred hcccccCC
Q psy8413 17 AYKKRRRV 24 (796)
Q Consensus 17 ~~~kr~r~ 24 (796)
-|.||||.
T Consensus 20 ppkkrrrl 27 (28)
T 3ukx_C 20 PPKKRRRL 27 (28)
T ss_dssp CCSCCCCC
T ss_pred chhhhhcc
Confidence 35566664
No 17
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=57.82 E-value=1.7e+02 Score=29.94 Aligned_cols=143 Identities=13% Similarity=0.193 Sum_probs=99.1
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHhhHhhHHHHHHH-HHHHHHhCCCCchHHHHHHHHHhccCc
Q psy8413 23 RVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRI-LTDCATKYPEKCCIYTTLVGLLNAKNY 101 (796)
Q Consensus 23 r~~~~~~~~~~l~~~I~~ige~~~~s~e~~l~~La~~l~~d~~~~~~~i~~~-l~~~v~e~P~K~p~yAtLVgllN~kn~ 101 (796)
-..|+.++.+++.-.+-.+.+. + +++.+..+.+.+.. ++-.-+..- +.+-|..+|...++|+-++-.+|. +
T Consensus 27 ~e~P~~~v~dki~Fi~NNls~~-N--l~~k~~el~~~l~~---~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~--~ 98 (249)
T 4b89_A 27 QEGAPKDVVEKVLFVLNNVTLA-N--LNNKVDELKKSLTP---NYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGS--G 98 (249)
T ss_dssp CCCCCHHHHHHHHHHHHHCCTT-T--HHHHHHHHHHHCCG---GGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTC--H
T ss_pred CCCcCHHHHhhhhhhhhcCChH-H--HHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCC--H
Confidence 3457889999999999999886 3 66777777777753 466666666 455788899999999999999884 6
Q ss_pred ccHHHHHHHHHHHHHHHHhc-----CChhhHHHHHHHHhhcc---cccccCh-----------------hhHHHHHHHHH
Q psy8413 102 NFGGEFVELMVKTFKDALKN-----CQWNAARYALRFLADLV---NCHVIST-----------------NSLLQLLENML 156 (796)
Q Consensus 102 ~~g~~iv~~l~~~lq~~l~~-----~~w~~~kl~lrFLa~L~---n~~Vi~~-----------------~sl~~ll~~ll 156 (796)
.+-+.++......+...|.+ .+....|.+=.+|+.+. |-|+.+. ..++.+.-.++
T Consensus 99 ~L~~~vl~~T~~~i~~LL~~~~i~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvL 178 (249)
T 4b89_A 99 LLHQFMVNVTLRQLFVLLSTKDEQAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKIL 178 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSCGGGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcccChHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHH
Confidence 67788888888888888864 35666777777777765 2333321 12455555566
Q ss_pred HhhhcCCCCccchhhHH
Q psy8413 157 DASKEDGVPNVRKDWYV 173 (796)
Q Consensus 157 ~~a~e~~~~q~R~d~~v 173 (796)
+.|....+-.+-++|.+
T Consensus 179 e~~k~SkiFkPPNPWt~ 195 (249)
T 4b89_A 179 QRASESKIFKPPNPWTV 195 (249)
T ss_dssp GGGTTCSSSSTTCHHHH
T ss_pred HhcccCCccCCCCchHH
Confidence 65655554444455543
No 18
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.55 E-value=1.1e+02 Score=33.14 Aligned_cols=152 Identities=16% Similarity=0.057 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCCCchHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHhcCChhhHHH
Q psy8413 50 ESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARY 129 (796)
Q Consensus 50 e~~l~~La~~l~~d~~~~~~~i~~~l~~~v~e~P~K~p~yAtLVgllN~kn~~~g~~iv~~l~~~lq~~l~~~~w~~~kl 129 (796)
++++++.+..|..++=+ ..-+.-...|+.++. .|- .++.|.+.+|. .+|+.++- +-..
T Consensus 50 ~ee~~k~~~~ii~EYf~--~~d~~Ea~~~l~eL~--~p~----------~~~~~v~~~I~-------~aLdr~~~-erE~ 107 (358)
T 3eiq_C 50 ETAFEKTLTPIIQEYFE--HGDTNEVAEMLRDLN--LGE----------MKSGVPVLAVS-------LALEGKAS-HREM 107 (358)
T ss_dssp CHHHHHHHHHHHHHHHH--HCCHHHHHHHHHTTT--CCG----------GGGGHHHHHHH-------HHTTSCHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHhC--Cch----------hHHHHHHHHHH-------HHhcCChH-HHHH
Confidence 35777878777765532 222345556666631 111 12334443333 25555443 3456
Q ss_pred HHHHHhhcccccccChhhHHHHHHHHHHhhhcC--CCCccc---hhhHHHHHHh-hchh--ccHHhHHhhHHHHHHHHHH
Q psy8413 130 ALRFLADLVNCHVISTNSLLQLLENMLDASKED--GVPNVR---KDWYVYAVLS-CLPW--VGRELYEKKEQALALLLLN 201 (796)
Q Consensus 130 ~lrFLa~L~n~~Vi~~~sl~~ll~~ll~~a~e~--~~~q~R---~d~~vy~vL~-~LP~--~G~~L~e~~~~~l~~ll~~ 201 (796)
+.++|++|. .+++++..+.+=|..+++.+.+. ++|.+. +-++..+|.. +||. +.+..-.-..+.-...+.+
T Consensus 108 ~s~LLs~L~-~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~ 186 (358)
T 3eiq_C 108 TSKLLSDLC-GTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDK 186 (358)
T ss_dssp HHHHHHTTT-TTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHH
Confidence 779999998 59999999999999999999664 355432 3345555443 4553 3221111111223457888
Q ss_pred HHHHHhhcccccccccccccCCCC
Q psy8413 202 IELYLNKRSKKHVAALQVWSSDKP 225 (796)
Q Consensus 202 i~~yl~~r~~~~~~ll~~~~~~~~ 225 (796)
.+.|+.. ++....+.++|..+..
T Consensus 187 a~~~L~~-~~~~~~~~~~WG~g~~ 209 (358)
T 3eiq_C 187 ATVLLSM-SKGGKRKDSVWGSGGG 209 (358)
T ss_dssp HHHHHTC----------CCCCCCS
T ss_pred HHHHHhc-cchHHHHHHhcCCCCC
Confidence 8888855 4555678899975543
No 19
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=47.47 E-value=1.8e+02 Score=28.34 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy8413 54 DGLAKVLETDLATYRVKILRILTDCATKY--PEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYAL 131 (796)
Q Consensus 54 ~~La~~l~~d~~~~~~~i~~~l~~~v~e~--P~K~p~yAtLVgllN~kn~~~g~~iv~~l~~~lq~~l~~~~w~~~kl~l 131 (796)
..|+..+..++..+-..++..++.+.... ..+..+.++|-.++..-. ++.++..+...++..+|.-=..++
T Consensus 82 ~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l 154 (242)
T 2qk2_A 82 ALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETA 154 (242)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHH
Confidence 33444444444455666666666665442 112333444444444321 344555666777788897777788
Q ss_pred HHHhhccccc---ccChhhHHHHHHHHHHhhhcCCCCccc
Q psy8413 132 RFLADLVNCH---VISTNSLLQLLENMLDASKEDGVPNVR 168 (796)
Q Consensus 132 rFLa~L~n~~---Vi~~~sl~~ll~~ll~~a~e~~~~q~R 168 (796)
.+++.+.... ......+-.++..++... ++..+.+|
T Consensus 155 ~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l-~D~~~~VR 193 (242)
T 2qk2_A 155 LFIARALTRTQPTALNKKLLKLLTTSLVKTL-NEPDPTVR 193 (242)
T ss_dssp HHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH-TSSCHHHH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHh-cCCChHHH
Confidence 8888854331 122333444444444444 34443444
No 20
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=47.47 E-value=46 Score=31.87 Aligned_cols=103 Identities=20% Similarity=0.154 Sum_probs=53.4
Q ss_pred HHHhcCChhhHHHHHHHHhhcccccccChhhHHHHHHHHHHhhhcCC--CCccchh---hHHHHHH-hhchh--ccHHhH
Q psy8413 117 DALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDG--VPNVRKD---WYVYAVL-SCLPW--VGRELY 188 (796)
Q Consensus 117 ~~l~~~~w~~~kl~lrFLa~L~n~~Vi~~~sl~~ll~~ll~~a~e~~--~~q~R~d---~~vy~vL-~~LP~--~G~~L~ 188 (796)
.++++++ .+-..+.++|++|.. ++++++.+.+=|..+++.+.+.. +|.+..- ++..++. .+||- +.+.+.
T Consensus 52 ~aldrk~-~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~ 129 (165)
T 2rg8_A 52 LALEGKA-SHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG 129 (165)
T ss_dssp HHHTSCH-HHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTT
T ss_pred HHHcCCH-HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 3455543 234477889999965 99999999999999999886643 5543222 2333332 34443 322211
Q ss_pred HhhHHHHHHHHHHHHHHHhhcccccccccccccC
Q psy8413 189 EKKEQALALLLLNIELYLNKRSKKHVAALQVWSS 222 (796)
Q Consensus 189 e~~~~~l~~ll~~i~~yl~~r~~~~~~ll~~~~~ 222 (796)
.-......+.+.+.+.++. .++....+.++|.+
T Consensus 130 ~~~~~~~~~~l~~a~~ll~-~~~~~~~~~~~Wg~ 162 (165)
T 2rg8_A 130 TVDCVQARAALDKATVLLS-MSKGGKRKDSVWGS 162 (165)
T ss_dssp TCCCHHHHHHHHHHHHHHH-TC------------
T ss_pred ccCchHHHHHHHHHHHHHh-ccccHHHHHhhcCC
Confidence 1112333457777778774 34555677788854
No 21
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=39.07 E-value=46 Score=33.63 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHhhccc
Q psy8413 108 VELMVKTFKDALKNCQWNAARYALRFLADLVN 139 (796)
Q Consensus 108 v~~l~~~lq~~l~~~~w~~~kl~lrFLa~L~n 139 (796)
++.+...+-.++++.+|..=...+.||+.+..
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 33445555566677788666677778887764
No 22
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.21 E-value=2.7e+02 Score=29.28 Aligned_cols=107 Identities=19% Similarity=0.120 Sum_probs=63.3
Q ss_pred HHHHhcCChhhHHHHHHHHhhcccccccChhhHHHHHHHHHHhhhcC--CCCccc---hhhHHHHHH-hhchh--ccHHh
Q psy8413 116 KDALKNCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKED--GVPNVR---KDWYVYAVL-SCLPW--VGREL 187 (796)
Q Consensus 116 q~~l~~~~w~~~kl~lrFLa~L~n~~Vi~~~sl~~ll~~ll~~a~e~--~~~q~R---~d~~vy~vL-~~LP~--~G~~L 187 (796)
..+++.++- +-....++|++|. .++++++.+.+=|..+++.+.+. ++|.+. +.++..+|. .+||. +++..
T Consensus 44 ~~aldr~~~-erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~ 121 (307)
T 2zu6_B 44 SLALEGKAS-HREMTSKLLSDLC-GTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYK 121 (307)
T ss_dssp HHHHTSCHH-HHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGT
T ss_pred HHHhCCCHH-HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345666644 3357788999996 69999999999999999988663 355432 223444333 34443 33222
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcccccccccccccCCCC
Q psy8413 188 YEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKP 225 (796)
Q Consensus 188 ~e~~~~~l~~ll~~i~~yl~~r~~~~~~ll~~~~~~~~ 225 (796)
..-....-.+.+.+.+.++..+ +....+.++|..+.+
T Consensus 122 ~~~~~~~g~~~l~~a~~~l~~~-~~~~~~~~~WG~~~~ 158 (307)
T 2zu6_B 122 GTVDCVQARAALDKATVLLSMS-KGGKRKDSVWGSGGG 158 (307)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTC-C----CCCSSCCCST
T ss_pred hcccchHHHHHHHHHHHHhccc-ccHhHHhhhcCCCCC
Confidence 2111122235778888888655 455678899975543
No 23
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=25.91 E-value=4.5e+02 Score=25.29 Aligned_cols=90 Identities=10% Similarity=0.120 Sum_probs=54.5
Q ss_pred hhHhhHHHHHHHHHHHHHhCC--CCchHHHHHHHHHhccCcccH-----HHHHHHHHHHHHHHHh--cCChhhHHHHHHH
Q psy8413 63 DLATYRVKILRILTDCATKYP--EKCCIYTTLVGLLNAKNYNFG-----GEFVELMVKTFKDALK--NCQWNAARYALRF 133 (796)
Q Consensus 63 d~~~~~~~i~~~l~~~v~e~P--~K~p~yAtLVgllN~kn~~~g-----~~iv~~l~~~lq~~l~--~~~w~~~kl~lrF 133 (796)
.....+..++..+++.+.+++ .......++..++....|-+. +.-=-.++..+|..+. ... +-.+.+.+.
T Consensus 57 s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~~~~~~~~~q~~lL~ale~~~~~~~~~-~~~~~~~~i 135 (189)
T 1paq_A 57 TYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFD-KPDLILFSA 135 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGGGTCCSHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhccCh-hHHHHHHHH
Confidence 344678888888888776543 222245555566655443222 2333455666777665 222 234556666
Q ss_pred HhhcccccccChhhHHHHHH
Q psy8413 134 LADLVNCHVISTNSLLQLLE 153 (796)
Q Consensus 134 La~L~n~~Vi~~~sl~~ll~ 153 (796)
|-.|+..-||+.+.++.-++
T Consensus 136 l~~LYd~DileEe~il~W~~ 155 (189)
T 1paq_A 136 LVSLYDNDIIEEDVIYKWWD 155 (189)
T ss_dssp HHHHHHTTSSCHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHh
Confidence 77777788888888888875
No 24
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.87 E-value=1.2e+02 Score=22.05 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy8413 694 SEEVVEKIEEKLEAAQADQKN 714 (796)
Q Consensus 694 ~~~~~e~~~~~l~~a~~eqk~ 714 (796)
.+.++++++.+|.+.++...+
T Consensus 25 leselqalekklaalksklqa 45 (48)
T 1g6u_A 25 LESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356677777788777776554
No 25
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.05 E-value=1.2e+02 Score=36.07 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=66.7
Q ss_pred hhhhHHHHHHHHHHhhHh-hHHHHHHHHHHHHHhC-------CCCchHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHh
Q psy8413 49 LESHLDGLAKVLETDLAT-YRVKILRILTDCATKY-------PEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALK 120 (796)
Q Consensus 49 ~e~~l~~La~~l~~d~~~-~~~~i~~~l~~~v~e~-------P~K~p~yAtLVgllN~kn~~~g~~iv~~l~~~lq~~l~ 120 (796)
++-|-+.+|..|.. ++. ..-.+...++.|+..+ |+|.-+|++|+.=+-.-+|..-..++.+++..+=+.++
T Consensus 306 ~~~nrkecA~~Ll~-l~~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~ 384 (771)
T 1h2v_C 306 HWKERKTCAAQLVS-YPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLD 384 (771)
T ss_dssp HTTCHHHHHHHHHT-CCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGG
T ss_pred ccCCHHHHHHHHhc-CCCCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhc
Confidence 33344566666653 111 1113566777777777 78999999999888888888888899999999988888
Q ss_pred cCChhhHHHHHHHHhhcc
Q psy8413 121 NCQWNAARYALRFLADLV 138 (796)
Q Consensus 121 ~~~w~~~kl~lrFLa~L~ 138 (796)
+-+-.-.+.++.++||+.
T Consensus 385 ~md~e~~~Rf~dwFShhL 402 (771)
T 1h2v_C 385 TMNTTCVDRFINWFSHHL 402 (771)
T ss_dssp GBCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHH
Confidence 888888888899998875
No 26
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=20.08 E-value=2.5e+02 Score=32.02 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHhhHhhHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhccCcccHH
Q psy8413 27 NQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCATKY-PEKCCIYTTLVGLLNAKNYNFGG 105 (796)
Q Consensus 27 ~~~~~~~l~~~I~~ige~~~~s~e~~l~~La~~l~~d~~~~~~~i~~~l~~~v~e~-P~K~p~yAtLVgllN~kn~~~g~ 105 (796)
...+..+=-..+.+++...+ ++.=+..|.+.+....+.+|..++..+..|+... |.+..+.-+|+.++......+..
T Consensus 363 d~~Ir~~alelL~~l~~~~n--v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNGNN--IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRD 440 (618)
T ss_dssp CHHHHHHHHHHHHHHCCSSS--THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCS
T ss_pred ChhHHHHHHHHHHHHccccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHH
Confidence 34555555556777877633 4545566666666666789999999999999986 66777888888888887665555
Q ss_pred HHHHHHHH
Q psy8413 106 EFVELMVK 113 (796)
Q Consensus 106 ~iv~~l~~ 113 (796)
+++..+..
T Consensus 441 ~~~~~l~~ 448 (618)
T 1w63_A 441 DAVPNLIQ 448 (618)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
Done!