Your job contains 1 sequence.
>psy8413
MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVL
ETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALK
NCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCL
PWVGRELYEKKEQALALLLLNIELYLNKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIV
KLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDC
PEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIF
GELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAW
FAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPL
LPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD
PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHD
HQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVG
KELLDAKERLKHVSSESEEESDGEGGKKNEEKISEEVVEKIEEKLEAAQADQKNLFLIIF
QRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDL
EPHILDVFHQFLALNA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8413
(796 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0022942 - symbol:Cbp80 "cap binding protein 80" sp... 2616 4.5e-272 1
UNIPROTKB|Q09161 - symbol:NCBP1 "Nuclear cap-binding prot... 2193 3.0e-227 1
UNIPROTKB|F1PUP7 - symbol:NCBP1 "Uncharacterized protein"... 2189 8.0e-227 1
MGI|MGI:1891840 - symbol:Ncbp1 "nuclear cap binding prote... 2187 1.3e-226 1
UNIPROTKB|Q5ZJZ6 - symbol:NCBP1 "Nuclear cap-binding prot... 2181 5.6e-226 1
RGD|1308973 - symbol:Ncbp1 "nuclear cap binding protein s... 2181 5.6e-226 1
UNIPROTKB|Q6DIE2 - symbol:ncbp1 "Nuclear cap-binding prot... 2178 1.2e-225 1
UNIPROTKB|E1BMM0 - symbol:NCBP1 "Uncharacterized protein"... 2170 8.3e-225 1
UNIPROTKB|F1P0M6 - symbol:NCBP1 "Nuclear cap-binding prot... 2136 3.3e-221 1
UNIPROTKB|Q4R440 - symbol:Q4R440 "Testis cDNA clone: QtsA... 2026 1.5e-209 1
UNIPROTKB|F1ST49 - symbol:NCBP1 "Uncharacterized protein"... 1993 4.7e-206 1
WB|WBGene00018156 - symbol:ncbp-1 species:6239 "Caenorhab... 1212 5.3e-132 2
FB|FBgn0038887 - symbol:CG7907 species:7227 "Drosophila m... 1038 9.0e-111 2
UNIPROTKB|A6QNR9 - symbol:LOC100124428 "Uncharacterized p... 938 3.0e-94 1
DICTYBASE|DDB_G0269814 - symbol:ncbp1 "nuclear cap-bindin... 535 9.4e-70 2
TAIR|locus:2054137 - symbol:ABH1 "ABA HYPERSENSITIVE 1" s... 531 2.9e-50 2
ASPGD|ASPL0000002953 - symbol:AN6507 species:162425 "Emer... 376 1.1e-36 2
UNIPROTKB|G4NH07 - symbol:MGG_12123 "Cap binding protein"... 393 1.8e-34 2
POMBASE|SPAC6G10.07 - symbol:SPAC6G10.07 "nuclear cap-bin... 370 2.9e-34 2
CGD|CAL0004925 - symbol:GCR3 species:5476 "Candida albica... 228 1.4e-20 4
UNIPROTKB|Q59QD1 - symbol:GCR3 "Likely nuclear cap-bindin... 228 1.4e-20 4
SGD|S000004732 - symbol:STO1 "Large subunit of the nuclea... 178 3.6e-15 4
UNIPROTKB|F2Z2T1 - symbol:NCBP1 "Nuclear cap-binding prot... 175 3.2e-12 1
UNIPROTKB|I3LJD7 - symbol:I3LJD7 "Uncharacterized protein... 173 5.2e-12 1
>FB|FBgn0022942 [details] [associations]
symbol:Cbp80 "cap binding protein 80" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0035195 "gene
silencing by miRNA" evidence=IMP] [GO:0045071 "negative regulation
of viral genome replication" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 SUPFAM:SSF48371 GO:GO:0022008 GO:GO:0003677
EMBL:AE014298 GO:GO:0045071 GO:GO:0030422 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 Gene3D:1.25.40.180 GO:GO:0006370
GO:GO:0031053 GO:GO:0000339 eggNOG:NOG303489 KO:K12882 OMA:LICRVGE
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 EMBL:AJ238970
EMBL:AY051796 EMBL:AL031766 RefSeq:NP_524750.2 RefSeq:NP_726938.1
UniGene:Dm.1832 ProteinModelPortal:Q7K4N3 SMR:Q7K4N3 IntAct:Q7K4N3
STRING:Q7K4N3 PaxDb:Q7K4N3 PRIDE:Q7K4N3 EnsemblMetazoa:FBtr0070683
EnsemblMetazoa:FBtr0070684 GeneID:44409 KEGG:dme:Dmel_CG7035
UCSC:CG7035-RA CTD:44409 FlyBase:FBgn0022942 InParanoid:Q7K7B2
OrthoDB:EOG4RR4Z8 PhylomeDB:Q7K4N3 ChiTaRS:NCBP1 GenomeRNAi:44409
NextBio:837236 Bgee:Q7K4N3 Uniprot:Q7K4N3
Length = 800
Score = 2616 (925.9 bits), Expect = 4.5e-272, P = 4.5e-272
Identities = 506/804 (62%), Positives = 603/804 (75%)
Query: 3 NRRRPHE-EDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLE 61
+RRR H+ ED+GY+ KRRRV ENQE+EDR E LI++VGERST+S+ES+L+GL VLE
Sbjct: 2 SRRRAHDTEDEGYDHRRNKRRRVSENQEIEDRLESLILRVGERSTSSVESNLEGLVSVLE 61
Query: 62 TDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKN 121
DL T+R+KILRIL+DCA + PEKC +YTTLVGLLNAKNY FGGEFV+ MVKTFK++LK
Sbjct: 62 ADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKM 121
Query: 122 CQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLP 181
C+W+AARY+LRFLADLVNCHVIS SLLQLL+ M+D S ED VP VR+DW+V+AVLS LP
Sbjct: 122 CRWDAARYSLRFLADLVNCHVISATSLLQLLDTMIDVSNEDTVPQVRRDWFVFAVLSTLP 181
Query: 182 WVGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVK 241
WVGR KRSKKH AL+VWSSD PHPQEEYLDCLWAQI K
Sbjct: 182 WVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSDAPHPQEEYLDCLWAQIRK 241
Query: 242 LRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCP 301
LRQDNW + HI RPY VFDS L ALQHNLP I+ PPHHD+ YPMP VV+RMFDYTDCP
Sbjct: 242 LRQDNWAEKHIPRPYLVFDSILCEALQHNLPTIVPPPHHDNFEYPMPWVVYRMFDYTDCP 301
Query: 302 EEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLK--YNMKIPLEYCIVEII 359
+ P+ LPGAHSIERFLIEEHL IIE + ERKDCA QLL Y KIPLEYCIVE++
Sbjct: 302 DGPN---LPGAHSIERFLIEEHLHHIIETYHHERKDCAAQLLSFPYKHKIPLEYCIVEVV 358
Query: 360 FGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVA 419
F ELF +PTP+YL+I YGS+LIELCK++P T+PQVLAQAT ILFMRI+SMNT+CFDRFV
Sbjct: 359 FAELFHMPTPRYLDICYGSILIELCKLQPATLPQVLAQATEILFMRIDSMNTSCFDRFVN 418
Query: 420 WFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAP 479
WF+YHLSNF+F WSW++W+S L LD EHP+PKFI EVL KC+RLSYHQRI E++P +A
Sbjct: 419 WFSYHLSNFKFTWSWDEWDSCLLLDGEHPRPKFIQEVLQKCLRLSYHQRITEMMPTTYAK 478
Query: 480 LLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMD-EDG 538
L+PL P P++KY E +LPG A +L+ AI++K +P E++ IL IP+S E+
Sbjct: 479 LIPLTPVPNYKYANEEAANLPGTTVAHQLVVAIRQK-CTPEEVVNILKDIPNSGYSGEEM 537
Query: 539 AD-PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFEL 597
+D N LKIDVF Q LL LGSKSFSHSFAA+SKF+ V + + TEE+Q +L ++FEL
Sbjct: 538 SDGSFNALKIDVFVQTLLNLGSKSFSHSFAAISKFHSVFRA-LAETEEAQICILHNIFEL 596
Query: 598 WHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVN 657
W HQQMM VLIDK+LK Q++ CS+VA WIFSKEM EFTKLY+WEILHLTIKKM+K+V
Sbjct: 597 WSSHQQMMVVLIDKLLKLQIVDCSAVATWIFSKEMTGEFTKLYLWEILHLTIKKMNKHVI 656
Query: 658 RVGKELLDAKERLKHVXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXAAQADQ 712
++ EL +AKE+L AA +Q
Sbjct: 657 KLNTELSEAKEKLAKADSSSSDSEDDSSHKRKKPITHADKPSEEVVERMEEKLEAANVNQ 716
Query: 713 KNLFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLE 772
K LFLI+FQRFIMILSEHL+R DTDG D +T WY+WTIGRLQQV L HHEQVQKYSSTLE
Sbjct: 717 KRLFLIVFQRFIMILSEHLLRSDTDGRDPDTDWYRWTIGRLQQVFLMHHEQVQKYSSTLE 776
Query: 773 TLLFTQDLEPHILDVFHQFLALNA 796
TLLFT DL+ HIL+VF QF+AL A
Sbjct: 777 TLLFTSDLDTHILEVFQQFVALRA 800
>UNIPROTKB|Q09161 [details] [associations]
symbol:NCBP1 "Nuclear cap-binding protein subunit 1"
species:9606 "Homo sapiens" [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005845 "mRNA cap binding complex" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0006406
"mRNA export from nucleus" evidence=IMP;TAS] [GO:0006446
"regulation of translational initiation" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0050434 "positive
regulation of viral transcription" evidence=TAS] [GO:0000387
"spliceosomal snRNP assembly" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0003677
GO:GO:0006446 Reactome:REACT_1675 GO:GO:0030529 GO:GO:0006368
GO:GO:0006406 GO:GO:0031047 GO:GO:0005845 GO:GO:0000387
GO:GO:0034660 Reactome:REACT_1788 Gene3D:1.25.40.180 GO:GO:0031442
GO:GO:0006370 GO:GO:0050434 GO:GO:0006379 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 GO:GO:0000339 PDB:3FEX PDB:3FEY
PDBsum:3FEX PDBsum:3FEY GO:GO:0008334 eggNOG:NOG303489 KO:K12882
OMA:LICRVGE PANTHER:PTHR12412 HOGENOM:HOG000007990 CTD:4686
HOVERGEN:HBG080328 OrthoDB:EOG4RXXZK ChiTaRS:NCBP1 EMBL:X80030
EMBL:D32002 EMBL:AK312807 EMBL:AB209233 EMBL:AL445531 EMBL:AL162385
EMBL:BC001450 IPI:IPI00019380 PIR:S50082 RefSeq:NP_002477.1
UniGene:Hs.595669 UniGene:Hs.686479 PDB:1H2T PDB:1H2U PDB:1H2V
PDB:1H6K PDB:1N52 PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V
PDBsum:1H6K PDBsum:1N52 PDBsum:1N54 DisProt:DP00392
ProteinModelPortal:Q09161 SMR:Q09161 DIP:DIP-33244N IntAct:Q09161
MINT:MINT-248693 STRING:Q09161 PhosphoSite:Q09161 DMDM:1705654
PaxDb:Q09161 PeptideAtlas:Q09161 PRIDE:Q09161 DNASU:4686
Ensembl:ENST00000375130 Ensembl:ENST00000375147 GeneID:4686
KEGG:hsa:4686 UCSC:uc004axq.3 GeneCards:GC09P100395 HGNC:HGNC:7658
MIM:600469 neXtProt:NX_Q09161 PharmGKB:PA31461 InParanoid:Q09161
EvolutionaryTrace:Q09161 GenomeRNAi:4686 NextBio:18072
ArrayExpress:Q09161 Bgee:Q09161 CleanEx:HS_NCBP1
Genevestigator:Q09161 GermOnline:ENSG00000136937 Uniprot:Q09161
Length = 790
Score = 2193 (777.0 bits), Expect = 3.0e-227, P = 3.0e-227
Identities = 423/798 (53%), Positives = 552/798 (69%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
+RRR +E+DG + KRR+ + E ED E LI KVGE+S SLES+L+GLA VLE
Sbjct: 2 SRRRHSDENDGGQP--HKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA 59
Query: 63 DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNC 122
DL Y+ KILR+L A PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK
Sbjct: 60 DLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKAN 119
Query: 123 QWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPW 182
+N A Y +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS LPW
Sbjct: 120 NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPW 179
Query: 183 VGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKL 242
VG+ +R K HV LQVW++DKPHPQEEYLDCLWAQI KL
Sbjct: 180 VGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKL 239
Query: 243 RQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPE 302
++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD PE
Sbjct: 240 KKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPE 299
Query: 303 EPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIF 360
P +PG+HS+ERF+IEE+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF
Sbjct: 300 GPV---MPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIF 356
Query: 361 GELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAW 420
ELF+LP P ++++ Y ++LIELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ W
Sbjct: 357 AELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINW 416
Query: 421 FAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPL 480
F++HLSNFQF+WSWEDW L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L
Sbjct: 417 FSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSAL 476
Query: 481 LPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD 540
P P +KY E LPG A L A K K ++ +EI +IL +P+ + D+D +
Sbjct: 477 CPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDE 535
Query: 541 --PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELW 598
NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W
Sbjct: 536 GFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVW 594
Query: 599 HDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNR 658
+H QM+AVL+DKM++TQ++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V +
Sbjct: 595 RNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLK 654
Query: 659 VGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLI 718
+ KEL +AKE+L +AQ++QKNLFL+
Sbjct: 655 IQKELEEAKEKLAR--QHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLV 712
Query: 719 IFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQ 778
IFQRFIMIL+EHLVRC+TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT
Sbjct: 713 IFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTA 772
Query: 779 DLEPHILDVFHQFLALNA 796
+L+PHIL VF QF AL A
Sbjct: 773 ELDPHILAVFQQFCALQA 790
>UNIPROTKB|F1PUP7 [details] [associations]
symbol:NCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031442 "positive regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0005845 "mRNA
cap binding complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0045292 "mRNA
cis splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear
cap binding complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 GO:GO:0005634
SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0003677 GO:GO:0006446
GO:GO:0003723 GO:GO:0030529 GO:GO:0006406 GO:GO:0005845
Gene3D:1.25.40.180 GO:GO:0031442 GO:GO:0006370 GO:GO:0006379
KO:K12882 OMA:LICRVGE PANTHER:PTHR12412
GeneTree:ENSGT00390000001733 CTD:4686 EMBL:AAEX03007976
RefSeq:XP_532003.2 Ensembl:ENSCAFT00000003862 GeneID:474772
KEGG:cfa:474772 Uniprot:F1PUP7
Length = 790
Score = 2189 (775.6 bits), Expect = 8.0e-227, P = 8.0e-227
Identities = 422/798 (52%), Positives = 552/798 (69%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
+RRR +E+DG + KRR+ + E ED E LI KVGE+S SLES+L+GLA VLE
Sbjct: 2 SRRRHSDENDGGQP--HKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA 59
Query: 63 DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNC 122
DL Y+ KILR+L A PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK
Sbjct: 60 DLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKAN 119
Query: 123 QWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPW 182
+N A Y +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS LPW
Sbjct: 120 NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPW 179
Query: 183 VGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKL 242
VG+ +R K HV LQVW+++KPHPQEEYLDCLWAQI KL
Sbjct: 180 VGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKL 239
Query: 243 RQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPE 302
++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD PE
Sbjct: 240 KKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPE 299
Query: 303 EPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIF 360
P +PG+HS+ERF+IEE+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF
Sbjct: 300 GPV---MPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIF 356
Query: 361 GELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAW 420
ELF+LP P ++++ Y ++LIELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ W
Sbjct: 357 AELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINW 416
Query: 421 FAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPL 480
F++HLSNFQF+WSWEDW L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L
Sbjct: 417 FSHHLSNFQFRWSWEDWSDCLTQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSAL 476
Query: 481 LPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD 540
P P +KY E LPG A L A K K ++ +EI +IL +P+ + D+D +
Sbjct: 477 CPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDE 535
Query: 541 --PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELW 598
NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W
Sbjct: 536 GFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVW 594
Query: 599 HDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNR 658
+H QM+AVL+DKM++TQ++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V +
Sbjct: 595 RNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLK 654
Query: 659 VGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLI 718
+ KEL +AKE+L +AQ++QKNLFL+
Sbjct: 655 IQKELEEAKEKLAR--QHKRRSDDDDRSSDRKDGALEEQIERLQEKVESAQSEQKNLFLV 712
Query: 719 IFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQ 778
IFQRFIMIL+EHLVRC+TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT
Sbjct: 713 IFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTA 772
Query: 779 DLEPHILDVFHQFLALNA 796
+L+PHIL VF QF AL A
Sbjct: 773 ELDPHILAVFQQFCALQA 790
>MGI|MGI:1891840 [details] [associations]
symbol:Ncbp1 "nuclear cap binding protein subunit 1"
species:10090 "Mus musculus" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=ISO]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO]
[GO:0006379 "mRNA cleavage" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0031047
"gene silencing by RNA" evidence=IEA] [GO:0031442 "positive
regulation of mRNA 3'-end processing" evidence=ISO] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 MGI:MGI:1891840 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0008380
GO:GO:0003677 GO:GO:0006446 GO:GO:0003723 EMBL:CH466565
GO:GO:0030529 GO:GO:0006406 GO:GO:0031047 GO:GO:0005845
Gene3D:1.25.40.180 GO:GO:0031442 GO:GO:0006370 GO:GO:0006379
eggNOG:NOG303489 KO:K12882 OMA:LICRVGE PANTHER:PTHR12412
GeneTree:ENSGT00390000001733 HOGENOM:HOG000007990 CTD:4686
HOVERGEN:HBG080328 OrthoDB:EOG4RXXZK ChiTaRS:NCBP1 EMBL:AK134334
EMBL:AK169557 EMBL:AL929438 EMBL:AL732615 EMBL:BC055777
EMBL:BC138898 IPI:IPI00458056 RefSeq:NP_001028373.2
UniGene:Mm.389536 PDB:3UKZ PDB:3UL0 PDBsum:3UKZ PDBsum:3UL0
ProteinModelPortal:Q3UYV9 SMR:Q3UYV9 STRING:Q3UYV9
PhosphoSite:Q3UYV9 PaxDb:Q3UYV9 PRIDE:Q3UYV9
Ensembl:ENSMUST00000030014 GeneID:433702 KEGG:mmu:433702
UCSC:uc008stk.1 InParanoid:B1AWH4 NextBio:408905 Bgee:Q3UYV9
Genevestigator:Q3UYV9 GermOnline:ENSMUSG00000028330 Uniprot:Q3UYV9
Length = 790
Score = 2187 (774.9 bits), Expect = 1.3e-226, P = 1.3e-226
Identities = 423/800 (52%), Positives = 548/800 (68%)
Query: 1 MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVL 60
MS RR +E D G KRR+ + E ED E LI KVGE+S SLES+L+GLA VL
Sbjct: 1 MSRRRHSYENDGGQPH---KRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVL 57
Query: 61 ETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALK 120
E DL Y+ KILR+L A PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK
Sbjct: 58 EADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLK 117
Query: 121 NCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCL 180
+N A Y +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS L
Sbjct: 118 ANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSL 177
Query: 181 PWVGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIV 240
PWVG+ +R K HV LQVW++DKPHPQEEYLDCLWAQI
Sbjct: 178 PWVGKELYEKKDAEMDRIFSTTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQ 237
Query: 241 KLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDC 300
KL++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD
Sbjct: 238 KLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDD 297
Query: 301 PEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEI 358
PE P +PG+HS+ERF+IEE+L II+ + ERK CA QL+ Y KIPL Y IVE+
Sbjct: 298 PEGPV---MPGSHSVERFVIEENLHCIIKSYWKERKTCAAQLVSYPGKNKIPLNYHIVEV 354
Query: 359 IFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFV 418
IF ELF+LP P ++++ Y ++LIELCK++P ++PQVLAQAT +L+MR+++M+T C DRF+
Sbjct: 355 IFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMSTTCVDRFI 414
Query: 419 AWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFA 478
WF++HLSNFQF+WSWEDW L DLE PKPKF+ EVL KC+RLSYHQ I +IVPP F+
Sbjct: 415 NWFSHHLSNFQFRWSWEDWSDCLTQDLESPKPKFVREVLEKCMRLSYHQHILDIVPPTFS 474
Query: 479 PLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSM--DE 536
L P P +KY E LPG A L A K K ++ +EI +IL +P+ + D+
Sbjct: 475 ALCPANPTCIYKYGDESSNSLPGHSVALCLSVAFKSKATN-DEIFSILKDVPNPNQVDDD 533
Query: 537 DGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFE 596
D NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K + +++ + +VL+ +FE
Sbjct: 534 DEGFRFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDKGKLHVLRVMFE 592
Query: 597 LWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYV 656
+W +H QM+AVL+DKM++TQ++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V
Sbjct: 593 VWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHV 652
Query: 657 NRVGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLF 716
++ KEL +AKE+L AAQ++QKNLF
Sbjct: 653 LKIQKELEEAKEKLAR--QHKRRSDDDDRSSDRKDGALEEQIERLQEKVEAAQSEQKNLF 710
Query: 717 LIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLF 776
L+IFQRFIMIL+EHLVRC+TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLF
Sbjct: 711 LVIFQRFIMILTEHLVRCETDGTSILTPWYKNCIERLQQIFLQHHQTIQQYMVTLENLLF 770
Query: 777 TQDLEPHILDVFHQFLALNA 796
T +L+PHIL VF QF AL A
Sbjct: 771 TAELDPHILAVFQQFCALQA 790
>UNIPROTKB|Q5ZJZ6 [details] [associations]
symbol:NCBP1 "Nuclear cap-binding protein subunit 1"
species:9031 "Gallus gallus" [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=ISS] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0005845 "mRNA cap binding complex" evidence=ISS]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0008380
GO:GO:0003677 GO:GO:0006446 GO:GO:0003723 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 Gene3D:1.25.40.180 GO:GO:0006370
eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412 HOGENOM:HOG000007990
EMBL:AJ720288 IPI:IPI00651211 RefSeq:NP_001026611.1
UniGene:Gga.2984 ProteinModelPortal:Q5ZJZ6 SMR:Q5ZJZ6 STRING:Q5ZJZ6
GeneID:427379 KEGG:gga:427379 CTD:4686 HOVERGEN:HBG080328
InParanoid:Q5ZJZ6 OrthoDB:EOG4RXXZK NextBio:20828646 Uniprot:Q5ZJZ6
Length = 793
Score = 2181 (772.8 bits), Expect = 5.6e-226, P = 5.6e-226
Identities = 420/800 (52%), Positives = 552/800 (69%)
Query: 1 MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVL 60
MS RR + DD + +K RRR E E+E+R E LI +VGE+S +SLES+L+GLA VL
Sbjct: 1 MSRRRHSDDSDDSDGQPHK-RRRTSEPSEIEERLESLICRVGEKSNSSLESNLEGLAGVL 59
Query: 61 ETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALK 120
E DL Y+ KILRIL A PEK +YTTLVGLLNA+NYNFGGEFVE M++ K+ LK
Sbjct: 60 EADLPNYKSKILRILCTVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKECLK 119
Query: 121 NCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCL 180
+N A + +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR DWY++A LS L
Sbjct: 120 VNMYNEAVHLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRCDWYIFAFLSSL 179
Query: 181 PWVGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIV 240
PWVG+ +R K HV LQVW++DKPHPQEEYLDCLW+QI
Sbjct: 180 PWVGKELYEKKDAEMDRLLSQTESYLKRRQKIHVPMLQVWTADKPHPQEEYLDCLWSQIQ 239
Query: 241 KLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDC 300
KL++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD
Sbjct: 240 KLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDD 299
Query: 301 PEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEI 358
PE P +PG+HS+ERF+IEE+L II+ ++ ERK CA QLL Y N KIPL Y IVE+
Sbjct: 300 PEGPV---MPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLLSYPGNNKIPLNYHIVEV 356
Query: 359 IFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFV 418
IF ELF+LP+P ++E+ Y ++LIELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+
Sbjct: 357 IFAELFQLPSPPHIEVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFI 416
Query: 419 AWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFA 478
WF++HLSNFQF+WSWEDW L DLE PKPKF+ EVL KC+RLSYHQRI +IVP F+
Sbjct: 417 NWFSHHLSNFQFRWSWEDWSDCLTQDLEKPKPKFVREVLEKCMRLSYHQRIIDIVPASFS 476
Query: 479 PLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDG 538
L P P +KY E LPG+ A L AIK K S+ +EI +IL +P+ + D+D
Sbjct: 477 VLSPANPVCIYKYGDESNRSLPGYTVALCLTIAIKNKASN-DEIFSILKDVPNPNQDDDD 535
Query: 539 AD--PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFE 596
+ NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K + ++E + +VL+ ++E
Sbjct: 536 DEGFTFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVVYE 594
Query: 597 LWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYV 656
+W +H QM+AVL+DKM++TQ++ C++VANWIFS E+ +FT+ Y+WEILH TI+KM+K+V
Sbjct: 595 VWKNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELAHDFTRFYIWEILHSTIRKMNKHV 654
Query: 657 NRVGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLF 716
++ KEL D K RL +AQ++QKNLF
Sbjct: 655 LKIHKELEDTKARLAR-QHKRRDSDDDDRSSDREDGPLEEQIERLQEKVESAQSEQKNLF 713
Query: 717 LIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLF 776
L+IFQRFIM+L+EHLVRC+T G+D T WYK I RLQQ+ L HH+ +Q+Y T E LLF
Sbjct: 714 LVIFQRFIMLLTEHLVRCETGGIDVFTPWYKSCIERLQQIFLQHHQIIQQYMVTFENLLF 773
Query: 777 TQDLEPHILDVFHQFLALNA 796
T +L+ HIL VF QF AL A
Sbjct: 774 TAELDHHILAVFQQFCALQA 793
>RGD|1308973 [details] [associations]
symbol:Ncbp1 "nuclear cap binding protein subunit 1"
species:10116 "Rattus norvegicus" [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=ISO;ISS]
[GO:0000339 "RNA cap binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005845 "mRNA cap binding
complex" evidence=ISO;ISS] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=ISO;ISS] [GO:0006379 "mRNA cleavage" evidence=ISO;ISS]
[GO:0006406 "mRNA export from nucleus" evidence=ISO;ISS]
[GO:0006446 "regulation of translational initiation"
evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO;ISS] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=ISO;ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 RGD:1308973 GO:GO:0005634 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0008380 GO:GO:0003677
GO:GO:0006446 GO:GO:0003723 GO:GO:0030529 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 Gene3D:1.25.40.180 GO:GO:0031442
GO:GO:0006370 GO:GO:0006379 eggNOG:NOG303489 KO:K12882 OMA:LICRVGE
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 HOGENOM:HOG000007990
CTD:4686 HOVERGEN:HBG080328 OrthoDB:EOG4RXXZK EMBL:BC092199
IPI:IPI00364994 RefSeq:NP_001014785.1 UniGene:Rn.13482
ProteinModelPortal:Q56A27 SMR:Q56A27 STRING:Q56A27
PhosphoSite:Q56A27 PRIDE:Q56A27 Ensembl:ENSRNOT00000030825
GeneID:298075 KEGG:rno:298075 UCSC:RGD:1308973 InParanoid:Q56A27
NextBio:643112 Genevestigator:Q56A27 GermOnline:ENSRNOG00000023605
Uniprot:Q56A27
Length = 790
Score = 2181 (772.8 bits), Expect = 5.6e-226, P = 5.6e-226
Identities = 422/800 (52%), Positives = 548/800 (68%)
Query: 1 MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVL 60
MS RR +E D G KRR+ + E ED E LI KVGE+S SLES+L+GLA VL
Sbjct: 1 MSRRRHSYENDGGQPH---KRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVL 57
Query: 61 ETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALK 120
E DL Y+ KILR+L A PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK
Sbjct: 58 EADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLK 117
Query: 121 NCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCL 180
+N A Y +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS L
Sbjct: 118 ANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSL 177
Query: 181 PWVGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIV 240
PWVG+ +R K HV LQVW++DKPHPQEEYLDCLWAQI
Sbjct: 178 PWVGKELYEKKDAEMDRIFSSTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQ 237
Query: 241 KLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDC 300
KL++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD
Sbjct: 238 KLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDD 297
Query: 301 PEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEI 358
PE P +PG+HS+ERF+IEE+L II+ + ERK CA QL+ Y KIPL Y IVE+
Sbjct: 298 PEGPV---MPGSHSVERFVIEENLHCIIKSYWKERKTCAAQLVSYPGKNKIPLNYHIVEV 354
Query: 359 IFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFV 418
IF ELF+LP P ++++ Y ++LIELCK++P ++PQVLAQAT +L+MR+++M+T C DRF+
Sbjct: 355 IFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMSTTCVDRFI 414
Query: 419 AWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFA 478
WF++HLSNFQF+WSWEDW L DLE PKPKF+ EVL KC+RLSYHQ I +IVPP F+
Sbjct: 415 NWFSHHLSNFQFRWSWEDWSDCLTQDLESPKPKFVREVLEKCMRLSYHQHILDIVPPTFS 474
Query: 479 PLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSM--DE 536
L P P +KY E LPG A L A K K ++ +EI +IL +P+ + D+
Sbjct: 475 ALCPANPTCIYKYGDESSNSLPGHSVALCLSVAFKSKATN-DEIFSILKDVPNPNQVDDD 533
Query: 537 DGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFE 596
D NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K + +++ + +VL+ +FE
Sbjct: 534 DEGFRFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDKGKLHVLRVMFE 592
Query: 597 LWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYV 656
+W +H QM+AVL+DKM++TQ++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V
Sbjct: 593 VWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHV 652
Query: 657 NRVGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLF 716
++ KEL +AKE+L +AQ++QKNLF
Sbjct: 653 LKIQKELEEAKEKLAR--QHKRRSDDDDRGSDRKDGALEEQIERLQEKVESAQSEQKNLF 710
Query: 717 LIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLF 776
L+IFQRFIMIL+EHLVRC+TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLF
Sbjct: 711 LVIFQRFIMILTEHLVRCETDGTSILTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLF 770
Query: 777 TQDLEPHILDVFHQFLALNA 796
T +L+PHIL VF QF AL A
Sbjct: 771 TAELDPHILAVFQQFCALQA 790
>UNIPROTKB|Q6DIE2 [details] [associations]
symbol:ncbp1 "Nuclear cap-binding protein subunit 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0006446 "regulation of translational initiation"
evidence=ISS] [GO:0031442 "positive regulation of mRNA 3'-end
processing" evidence=ISS] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371
GO:GO:0000184 GO:GO:0008380 GO:GO:0003677 GO:GO:0006446
GO:GO:0003723 GO:GO:0006406 GO:GO:0031047 GO:GO:0005845
Gene3D:1.25.40.180 GO:GO:0031442 GO:GO:0006370 GO:GO:0006379
eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412 HOGENOM:HOG000007990
CTD:4686 HOVERGEN:HBG080328 OrthoDB:EOG4RXXZK EMBL:CR855671
EMBL:BC075600 RefSeq:NP_001006788.1 UniGene:Str.7354
ProteinModelPortal:Q6DIE2 SMR:Q6DIE2 STRING:Q6DIE2 PRIDE:Q6DIE2
GeneID:448484 KEGG:xtr:448484 Xenbase:XB-GENE-5841194
InParanoid:Q6DIE2 Uniprot:Q6DIE2
Length = 791
Score = 2178 (771.8 bits), Expect = 1.2e-225, P = 1.2e-225
Identities = 419/798 (52%), Positives = 550/798 (68%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
+RRR +E+DG + KRR+ E E+EDR E LI +VGE+ST+SLES+L+GLA VLE
Sbjct: 2 SRRRHSDENDG--GPHHKRRKTSEPLEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEA 59
Query: 63 DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNC 122
DL Y+ KILRIL A PEK +YTTLVGLLNA+NYNFGGEFVE M++ K+ +K
Sbjct: 60 DLPNYKSKILRILCSVARTLPEKMTVYTTLVGLLNARNYNFGGEFVEAMIRHLKETIKLN 119
Query: 123 QWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPW 182
+N A Y +RFL DLVNCHVI+ S++ + E+ + ++E+ +P VR DWYVYAVLS LPW
Sbjct: 120 AYNEAVYLVRFLCDLVNCHVIAAPSMVAMFESFVGVTQEEDIPQVRSDWYVYAVLSSLPW 179
Query: 183 VGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKL 242
VG+ +R K HV+ LQVWS++KPHPQEEYLDCLWAQI KL
Sbjct: 180 VGKELYEKKDVEMDRILSQIEAYLKQRQKLHVSILQVWSAEKPHPQEEYLDCLWAQIQKL 239
Query: 243 RQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPE 302
++D W + HI RPY FDS L ALQHNLP PPH + +YP+P VVFRMFDYTD PE
Sbjct: 240 KKDRWQERHILRPYLAFDSVLCEALQHNLPPFTPPPHTEDSVYPVPRVVFRMFDYTDAPE 299
Query: 303 EPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIF 360
P +PG+HS+ERF+IEE+L I+ ++ ERK CA QLL Y KIPL Y IVE+IF
Sbjct: 300 GPV---MPGSHSVERFVIEENLHCILRSHWRERKTCAAQLLSYPEKNKIPLNYHIVEVIF 356
Query: 361 GELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAW 420
GELF+LP P +L++ Y ++LIELCK++P ++PQVLAQA+ +L+ R+++MNT C DRF+ W
Sbjct: 357 GELFQLPNPPHLDVMYTTLLIELCKLQPGSLPQVLAQASEMLYTRLDTMNTICIDRFINW 416
Query: 421 FAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPL 480
F++HLSNFQF+W+WEDW L DL+ PKP+F+ EVL KC+RLSYHQRI +IVP F+ L
Sbjct: 417 FSHHLSNFQFRWNWEDWSDCLSQDLDKPKPQFVREVLEKCMRLSYHQRILDIVPAAFSAL 476
Query: 481 LPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD 540
P P FKY E LPG+ A L NAIK K +S EI IL IP+ + D+D +
Sbjct: 477 YPASPSCVFKYGDESNSALPGYSVAVALTNAIKNK-ASDKEIFNILKDIPNPNQDDDDDE 535
Query: 541 PI--NPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELW 598
I NPLKI+VF Q LL L SKSFSHSF+AL+KF+ + K + ++E + ++L+ ++++W
Sbjct: 536 GISFNPLKIEVFVQTLLSLASKSFSHSFSALAKFHDIFKA-LSESDEGKLHILRVVYDIW 594
Query: 599 HDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNR 658
+H QM+AVL+DKM++TQ++ C++VANWIFS E+ +F + Y+WEILH TI+KM+K+V +
Sbjct: 595 KNHPQMIAVLVDKMIRTQIVDCAAVANWIFSPELSRDFPRFYIWEILHSTIRKMNKHVQK 654
Query: 659 VGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLI 718
+ KEL D K RL +AQ++QKNLFL+
Sbjct: 655 IQKELEDMKLRLAK-QHKHRDSDDNDEDSGRKDGPLEEQIERLQEKVESAQSEQKNLFLV 713
Query: 719 IFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQ 778
IFQRFIMIL+EHLVRC+T G+D NT WYK RLQQ+ L HH+ +Q+Y TLE LLFT
Sbjct: 714 IFQRFIMILTEHLVRCETGGIDVNTAWYKNCRERLQQIFLQHHQIIQQYMVTLENLLFTA 773
Query: 779 DLEPHILDVFHQFLALNA 796
+L+ HIL VF QF AL +
Sbjct: 774 ELDHHILTVFQQFCALQS 791
>UNIPROTKB|E1BMM0 [details] [associations]
symbol:NCBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0005845 "mRNA cap binding complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000339 "RNA cap binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0000184 GO:GO:0003677 GO:GO:0006446 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0005845 Gene3D:1.25.40.180
GO:GO:0031442 GO:GO:0006370 GO:GO:0006379 OMA:LICRVGE
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 EMBL:DAAA02023246
IPI:IPI00923937 Ensembl:ENSBTAT00000061170 Uniprot:E1BMM0
Length = 790
Score = 2170 (768.9 bits), Expect = 8.3e-225, P = 8.3e-225
Identities = 415/781 (53%), Positives = 542/781 (69%)
Query: 20 KRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLATYRVKILRILTDCA 79
KRR+ + E ED E LI KVGE+S SLES+L+GLA VLE DL Y+ KILR+L A
Sbjct: 17 KRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVA 76
Query: 80 TKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVN 139
PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK+ +N A Y +RFL+DLVN
Sbjct: 77 RLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKSNNYNEAVYLVRFLSDLVN 136
Query: 140 CHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRXXXXXXXXXXXXXX 199
CHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS LPWVG+
Sbjct: 137 CHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIF 196
Query: 200 XXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVF 259
+R K HV LQVW+++KPHPQEEYLDCLWAQI KL++D W + HI RPY F
Sbjct: 197 ASTENYLKRRQKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAF 256
Query: 260 DSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFL 319
DS L ALQHNLP PPH + +YPMP V+FRMFDYTD PE P +PG+HS+ERF+
Sbjct: 257 DSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPV---MPGSHSVERFV 313
Query: 320 IEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIFGELFRLPTPKYLEIFYG 377
IEE+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF ELF+LP P ++++ Y
Sbjct: 314 IEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYT 373
Query: 378 SVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQFQWSWEDW 437
++LIELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ WF++HLSNFQF+WSWEDW
Sbjct: 374 TLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDW 433
Query: 438 ESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGE 497
L D E PKPKF+ EVL KC+RLSYHQRI + VPP F+ L P P +KY E
Sbjct: 434 SDCLTQDPESPKPKFVREVLEKCMRLSYHQRILDFVPPTFSALCPANPTCIYKYGDESSN 493
Query: 498 HLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD--PINPLKIDVFTQVLL 555
LPG A L A K K ++ +EI +IL +P+ + D+D + NPLKI+VF Q LL
Sbjct: 494 SLPGHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLL 552
Query: 556 YLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKT 615
+L +KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W +H QM+AVL+DKM++T
Sbjct: 553 HLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRT 611
Query: 616 QLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKHVXX 675
Q++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V ++ KEL +AKE+L
Sbjct: 612 QIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLAR--Q 669
Query: 676 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLIIFQRFIMILSEHLVRCD 735
+AQ++QKNLFL+IFQRFIMIL+EHLVRC+
Sbjct: 670 HKRRSDDDDRSSDRKDGALEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVRCE 729
Query: 736 TDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLALN 795
TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT +L+PHIL VF QF AL
Sbjct: 730 TDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQ 789
Query: 796 A 796
A
Sbjct: 790 A 790
>UNIPROTKB|F1P0M6 [details] [associations]
symbol:NCBP1 "Nuclear cap-binding protein subunit 1"
species:9031 "Gallus gallus" [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005845 "mRNA cap binding complex" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IEA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 GO:GO:0005634 SUPFAM:SSF48371 GO:GO:0000184
GO:GO:0003677 GO:GO:0006446 GO:GO:0003723 GO:GO:0030529
GO:GO:0006406 GO:GO:0005845 Gene3D:1.25.40.180 GO:GO:0031442
GO:GO:0006370 GO:GO:0006379 OMA:LICRVGE PANTHER:PTHR12412
GeneTree:ENSGT00390000001733 IPI:IPI00651211 EMBL:AADN02016025
EMBL:AADN02060115 EMBL:AADN02028165 EMBL:AADN02060114
EMBL:AADN02060116 Ensembl:ENSGALT00000003255 Uniprot:F1P0M6
Length = 796
Score = 2136 (757.0 bits), Expect = 3.3e-221, P = 3.3e-221
Identities = 414/802 (51%), Positives = 546/802 (68%)
Query: 1 MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVL 60
MS RR + DD KRRR E E+E+R E LI +VGE+S +SLES+L+GLA VL
Sbjct: 1 MSRRRHSDDSDDSDAGQPHKRRRTSEPSEIEERLESLICRVGEKSNSSLESNLEGLAGVL 60
Query: 61 ETDLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALK 120
E DL Y+ KILRIL A PEK +YTTLVGLLNA+NYNFGGEFVE M++ K+ LK
Sbjct: 61 EADLPNYKSKILRILCTVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKECLK 120
Query: 121 NCQWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCL 180
+N A + +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR DWY++A LS L
Sbjct: 121 VNMYNEAVHLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRCDWYIFAFLSSL 180
Query: 181 PWVGRXXXXXXXXXXXXXXXXXXXXXX---KRSKKHVAALQVWSSDKPHPQEEYLDCLWA 237
PWVG+ +R K HV LQVW++DKPHPQEEYLDCLW+
Sbjct: 181 PWVGKELYEKKDAEMDRLLSQTESYLNVNRRRQKIHVPMLQVWTADKPHPQEEYLDCLWS 240
Query: 238 QIVKLRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDY 297
QI KL++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDY
Sbjct: 241 QIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDY 300
Query: 298 TDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKD-CATQLLKYNMKIPLEYCIV 356
TD PE P +PG+HS+ERF+IEE+L II+ ++ ERK + +N KIPL Y IV
Sbjct: 301 TDDPEGPV---MPGSHSVERFVIEENLHCIIKSHWKERKTWVGLAVTPWNNKIPLNYHIV 357
Query: 357 EIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDR 416
E+IF ELF+LP+P ++E+ Y ++LIELCK++P ++PQVLAQAT +L+MR+++MNT C DR
Sbjct: 358 EVIFAELFQLPSPPHIEVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDR 417
Query: 417 FVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQ 476
F+ WF++HLSNFQF+WSWEDW L DLE PKPKF+ EVL KC+RLSYHQRI +IVP
Sbjct: 418 FINWFSHHLSNFQFRWSWEDWSDCLTQDLEKPKPKFVREVLEKCMRLSYHQRIIDIVPAS 477
Query: 477 FAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDE 536
F+ L P P +KY E LPG+ A L AIK K S+ +EI +IL +P+ + D+
Sbjct: 478 FSVLSPANPVCIYKYGDESNRSLPGYTVALCLTIAIKNKASN-DEIFSILKDVPNPNQDD 536
Query: 537 DGAD--PINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSL 594
D + NPLKI+VF Q LL+L +KSFSHSF+AL+KF++V K + ++E + +VL+ +
Sbjct: 537 DDDEGFTFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVV 595
Query: 595 FELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSK 654
+E+W +H QM+AVL+DKM++TQ++ C++VANWIFS E+ +FT+ Y+WEILH TI+KM+K
Sbjct: 596 YEVWKNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELAHDFTRFYIWEILHSTIRKMNK 655
Query: 655 YVNRVGKELLDAKERLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKN 714
+V ++ KEL D K RL +AQ++QKN
Sbjct: 656 HVLKIHKELEDTKARLAR-QHKRRDSDDDDRSSDREDGPLEEQIERLQEKVESAQSEQKN 714
Query: 715 LFLIIFQRFIMILSEHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETL 774
LFL+IFQRFIM+L+EHLVRC+T G+D T WYK I RLQQ+ L HH+ +Q+Y T E L
Sbjct: 715 LFLVIFQRFIMLLTEHLVRCETGGIDVFTPWYKSCIERLQQIFLQHHQIIQQYMVTFENL 774
Query: 775 LFTQDLEPHILDVFHQFLALNA 796
LFT +L+ HIL VF QF AL A
Sbjct: 775 LFTAELDHHILAVFQQFCALQA 796
>UNIPROTKB|Q4R440 [details] [associations]
symbol:Q4R440 "Testis cDNA clone: QtsA-12580, similar to
human nuclear cap binding protein subunit 1, 80kDa (NCBP1),"
species:9541 "Macaca fascicularis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=ISS]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 GO:GO:0005634
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 Gene3D:1.25.40.180
GO:GO:0031442 GO:GO:0006379 PANTHER:PTHR12412 HOVERGEN:HBG080328
EMBL:AB179075 ProteinModelPortal:Q4R440 SMR:Q4R440 Uniprot:Q4R440
Length = 723
Score = 2026 (718.2 bits), Expect = 1.5e-209, P = 1.5e-209
Identities = 385/728 (52%), Positives = 504/728 (69%)
Query: 73 RILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALR 132
+I A PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK +N A Y +R
Sbjct: 3 KIYESSARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVR 62
Query: 133 FLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRXXXXXXX 192
FL+DLVNCHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS LPWVG+
Sbjct: 63 FLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKD 122
Query: 193 XXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHI 252
+R K HV LQVW++DKPHPQEEYLDCLWAQI KL++D W + HI
Sbjct: 123 AEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHI 182
Query: 253 YRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGA 312
RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD PE P +PG+
Sbjct: 183 LRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPV---MPGS 239
Query: 313 HSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIFGELFRLPTPK 370
HS+ERF+IEE+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF ELF+LP P
Sbjct: 240 HSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPP 299
Query: 371 YLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQF 430
++++ Y ++LIELCK++P ++PQVLAQAT +L+MR+++MNT C DRF+ WF++HLSNFQF
Sbjct: 300 HIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQF 359
Query: 431 QWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFK 490
+WSWEDW L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L P P +K
Sbjct: 360 RWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTCIYK 419
Query: 491 YNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD--PINPLKID 548
Y E LPG A L A K K ++ +EI +IL +P+ + D+D + NPLKI+
Sbjct: 420 YGDESSNSLPGHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDEGFSFNPLKIE 478
Query: 549 VFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVL 608
VF Q LL+L +KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W +H QM+AVL
Sbjct: 479 VFVQTLLHLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVWRNHPQMIAVL 537
Query: 609 IDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKE 668
+DKM++TQ++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V ++ KEL +AKE
Sbjct: 538 VDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKE 597
Query: 669 RLKHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLIIFQRFIMILS 728
+L +AQ++QKNLFL+IFQRFIMIL+
Sbjct: 598 KLAR--QHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILT 655
Query: 729 EHLVRCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVF 788
EHLVRC+TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT +L+PHIL VF
Sbjct: 656 EHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVF 715
Query: 789 HQFLALNA 796
QF AL A
Sbjct: 716 QQFCALQA 723
>UNIPROTKB|F1ST49 [details] [associations]
symbol:NCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0005845 "mRNA cap binding complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000339 "RNA cap binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0000184 GO:GO:0003677 GO:GO:0006446 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0005845 Gene3D:1.25.40.180
GO:GO:0031442 GO:GO:0006370 GO:GO:0006379 OMA:LICRVGE
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 EMBL:CU915414
EMBL:AEMK01194579 Ensembl:ENSSSCT00000005906 Uniprot:F1ST49
Length = 729
Score = 1993 (706.6 bits), Expect = 4.7e-206, P = 4.7e-206
Identities = 382/724 (52%), Positives = 501/724 (69%)
Query: 83 PEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHV 142
PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK +N A Y +RFL+DLVNCHV
Sbjct: 13 PEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHV 72
Query: 143 ISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRXXXXXXXXXXXXXXXXX 202
I+ S++ + EN + ++E+ VP VR+DWYVYA LS LPWVG+
Sbjct: 73 IAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANT 132
Query: 203 XXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTVFDSR 262
+R K HV LQVW+++KPHPQEEYLDCLWAQI KL++D W + HI RPY FDS
Sbjct: 133 ESYLKRRQKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSI 192
Query: 263 LSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEE 322
L ALQHNLP PPH + +YPMP V+FRMFDYTD PE P +PG+HS+ERF+IEE
Sbjct: 193 LCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPV---MPGSHSVERFVIEE 249
Query: 323 HLLQIIEMNYFERKDCATQLLKY--NMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVL 380
+L II+ ++ ERK CA QL+ Y KIPL Y IVE+IF ELF+LP P ++++ Y ++L
Sbjct: 250 NLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLL 309
Query: 381 IELCKMKPDTMPQV----LAQATVILFMRIESMNTA--CFDRFVAWFAYHLSNFQFQWSW 434
IELCK++P ++PQV LAQAT +L+MR+++MNT C DRF+ WF++HLSNFQF+WSW
Sbjct: 310 IELCKLQPGSLPQVVSFPLAQATEMLYMRLDTMNTTTTCVDRFINWFSHHLSNFQFRWSW 369
Query: 435 EDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQE 494
EDW L D E PKPKF+ EVL KC+RLSYHQRI +IVPP F+ L P P +KY E
Sbjct: 370 EDWSDCLNQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTCIYKYGDE 429
Query: 495 GGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGAD--PINPLKIDVFTQ 552
LPG A L A K K ++ +EI +IL +P+ + D+D + NPLKI+VF Q
Sbjct: 430 SSNTLPGHSVALCLAVAFKSKATN-DEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQ 488
Query: 553 VLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKM 612
LL+L +KSFSHSF+AL+KF++V K + ++E + +VL+ +FE+W +H QM+AVL+DKM
Sbjct: 489 TLLHLAAKSFSHSFSALAKFHEVFKT-LAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKM 547
Query: 613 LKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNRVGKELLDAKERLKH 672
++TQ++ C++VANWIFS E+ +FT+L+VWEILH TI+KM+K+V ++ KEL +AKE+L
Sbjct: 548 IRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLAR 607
Query: 673 VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQADQKNLFLIIFQRFIMILSEHLV 732
+AQ++QKNLFL+IFQRFIMIL+EHLV
Sbjct: 608 --QHKRRSDDDDRSSDRKDGALEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLV 665
Query: 733 RCDTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFL 792
RC+TDG T WYK I RLQQ+ L HH+ +Q+Y TLE LLFT +L+PHIL VF QF
Sbjct: 666 RCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQQFC 725
Query: 793 ALNA 796
AL A
Sbjct: 726 ALQA 729
>WB|WBGene00018156 [details] [associations]
symbol:ncbp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 SUPFAM:SSF48371 GO:GO:0002119 GO:GO:0008380
GO:GO:0003677 GO:GO:0040011 GO:GO:0040018 GO:GO:0003723
GO:GO:0040035 GO:GO:0031047 GO:GO:0040002 Gene3D:1.25.40.180
GO:GO:0006370 HSSP:Q09161 eggNOG:NOG303489 KO:K12882 OMA:LICRVGE
PANTHER:PTHR12412 EMBL:FO081318 PIR:T15197 RefSeq:NP_491850.2
ProteinModelPortal:O01763 SMR:O01763 STRING:O01763 PaxDb:O01763
EnsemblMetazoa:F37E3.1 GeneID:172345 KEGG:cel:CELE_F37E3.1
UCSC:F37E3.1 CTD:172345 WormBase:F37E3.1
GeneTree:ENSGT00390000001733 HOGENOM:HOG000007990 InParanoid:O01763
NextBio:875137 Uniprot:O01763
Length = 798
Score = 1212 (431.7 bits), Expect = 5.3e-132, Sum P(2) = 5.3e-132
Identities = 250/674 (37%), Positives = 390/674 (57%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
+RRR +++D E K+RR P +++E + + +I KVGE + +S+E +LD L L
Sbjct: 2 SRRRQFDDED--EVQMKRRRGAPLIEDVEKKLQGVIGKVGENTGSSIECNLDKLTAFLHD 59
Query: 63 DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNC 122
DL YR I+ I+ CA P + +YTTLVGLLN+KN+NFGG+ VE ++ +D L
Sbjct: 60 DLEKYRASIIDIIAGCAIYLPNRVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQDLLSKQ 119
Query: 123 QWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPW 182
++ A+ FL DL N V++ S+ + LE+ + A+ E+ +P VR D+Y+ VL CLPW
Sbjct: 120 KYQEAQNLAIFLCDLGNSGVLTAQSIGEYLESFIAAAFEENMPQVRNDYYIQTVLRCLPW 179
Query: 183 VGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVW-SSDKPHPQEEYLDCLWAQIVK 241
+G+ R+K HVA LQVW QE+YL+ L AQI
Sbjct: 180 IGKELTEKAPEQMENIGEAIGKYLELRNKNHVALLQVWREGSTDQKQEDYLESLSAQIEA 239
Query: 242 LRQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCP 301
LR +W ++HI R Y+ F++ L ALQHNLP+ P H +IYP P VVFR+F DC
Sbjct: 240 LRNADWVENHIPRHYSGFETTLQDALQHNLPSFQSPEHTSDMIYPYPLVVFRLFQDADCS 299
Query: 302 EEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY---NMKIPLEYCIVEI 358
S PLPG SI+RFL E + IIE N F RK CA +LL + N +P+ + I E
Sbjct: 300 AFSS-KPLPGDSSIDRFLFEGEIAWIIEKNQFNRKACARELLAFAEENPSVPIGFLIFET 358
Query: 359 IFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFV 418
IFG++ RLP Y IF+ S+++EL K+KPD PQ+L Q ++ R +SM C DR V
Sbjct: 359 IFGQMLRLPHAPYPAIFHCSLVLELLKLKPDDYPQILVQTVECIYRRADSMQPVCIDRMV 418
Query: 419 AWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFA 478
WF++HLSNFQ++++W DW+ L D F+ EV+ KC R +++I +P F
Sbjct: 419 DWFSFHLSNFQYRYTWTDWKDCLNKDAFSGSQIFVREVIEKCRRFGSYEKIIAALPQDFV 478
Query: 479 PLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDG 538
+ P PE + ++E + A+ +++Q P E A LN++ S+ DE+
Sbjct: 479 KIHPCSPEVRYLIDEEDTALVQR---AETFTQMFQERQ--PAE--AFLNELKSN--DEND 529
Query: 539 ADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELW 598
P N + +F V+L + SK++SH+F+AL ++ LK +E Q +L++L+ W
Sbjct: 530 ELPYNINEFGLFVMVMLKMASKTYSHNFSALFRYQTTLKTVCDASELYQEKLLETLYSCW 589
Query: 599 HDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTIKKMSKYVNR 658
+QQM+ +L DK+LK Q++ CS+V W+F ++M E + +++E+L+ ++K+++ +N
Sbjct: 590 KTNQQMLMILTDKLLKMQVIDCSAVVGWLFDEKMWQEHDRQWLFEVLNQALEKLTRQINV 649
Query: 659 VGKELLDAKERLKH 672
V K++ + E+ ++
Sbjct: 650 VEKDIKELTEKTEN 663
Score = 103 (41.3 bits), Expect = 5.3e-132, Sum P(2) = 5.3e-132
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 735 DTDGVDFNTHWYKWTIGRLQQVLLAHHEQVQKYSSTLETLLFTQDLEPHILDVFHQFLAL 794
DT G T + W GR VLLAH E + K+SS + +F++ +P I++ F+QF +L
Sbjct: 739 DTPGTQ--TPKFMWLRGRFCHVLLAHAETLLKHSSNIADEVFSEGTDPSIIECFNQFQSL 796
Score = 43 (20.2 bits), Expect = 1.2e-125, Sum P(2) = 1.2e-125
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 614 KTQLLHCSSVANWIFSKEMQPEFTKLY 640
+T L H S++A+ +FS+ P + +
Sbjct: 764 ETLLKHSSNIADEVFSEGTDPSIIECF 790
>FB|FBgn0038887 [details] [associations]
symbol:CG7907 species:7227 "Drosophila melanogaster"
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0000339
"RNA cap binding" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 EMBL:AE014297 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0000398 Gene3D:1.25.40.180 GO:GO:0000339
KO:K12882 PANTHER:PTHR12412 GeneTree:ENSGT00390000001733
OMA:ENETHPL EMBL:BT022776 EMBL:BT022805 RefSeq:NP_001097860.1
RefSeq:NP_001097861.1 UniGene:Dm.27360 SMR:Q4V551
EnsemblMetazoa:FBtr0113261 EnsemblMetazoa:FBtr0113262 GeneID:42539
KEGG:dme:Dmel_CG7907 UCSC:CG7907-RB FlyBase:FBgn0038887
eggNOG:NOG256595 InParanoid:Q4V551 OrthoDB:EOG4QBZMG
GenomeRNAi:42539 NextBio:829318 Uniprot:Q4V551
Length = 753
Score = 1038 (370.5 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 246/689 (35%), Positives = 366/689 (53%)
Query: 1 MSNRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVL 60
M R+R D+ + +KR + +E L+ ++ T LE L L +L
Sbjct: 1 MGRRKREDSSDEEGDDCRQKRTAETTVKTVEQ----LMRELSFPGHTPLELKLGNLGYLL 56
Query: 61 ETDLAT-YRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDAL 119
++ + ++ L C YP + Y TLVGL+N ++ FG E + M +++
Sbjct: 57 GKGMSVDLKENLINELVICLGYYPGQASAYATLVGLINVADFEFGSECLLFMAHKVGESV 116
Query: 120 KNCQWNAARYALRFLADLVNCHVISTNSLLQLLENML---DASKED----GV-PNVRKDW 171
WN R + + DL +C V+ ++ +L+LL L +A K+ GV P +R+D+
Sbjct: 117 HIRDWNRCRGVVHCMVDLYHCQVLPSSYILKLLAAFLKDCEALKDPDDLVGVTPQIRRDF 176
Query: 172 YVYAVLSCLPWVGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEY 231
Y VLS +P +GR KRS H L VW Q +Y
Sbjct: 177 LAYCVLSAMPLIGRDLEGETAFDKLIVSLQIYIK--KRSALHTNMLSVWPDFN---QRDY 231
Query: 232 LDCLWAQIVKLRQDNWTD-HH--IYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMP 288
L+ LW Q+ +RQ++W + H I RPY F LS H L + L H + YP+P
Sbjct: 232 LELLWQQVDGMRQNHWAEPEHQLIPRPYKSFSETLSHGRIHQLRDYDLAAHEERCRYPLP 291
Query: 289 SVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY--- 345
V FR+F E P++ P P SIER L+E H+L I+ + ERK CA LL Y
Sbjct: 292 RVCFRIFSCDSVGEIPNMPP-PV--SIERHLLEAHILDILISFHKERKICADSLLMYAAS 348
Query: 346 NMKIPLEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMR 405
++P+ YCIVE+I GE+ RLPT + I YGS+L+ELCK +PD +PQV+AQA I++ R
Sbjct: 349 KPQLPVYYCIVEVILGEMLRLPTANWSTIAYGSILVELCKRQPDKIPQVVAQALDIIYNR 408
Query: 406 IESMNTACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLE------HPKPKFIHEVLNK 459
+ SM+ ACFDR V W ++H+SNF F W W L ++ PK F+ E+L K
Sbjct: 409 LNSMSVACFDRLVNWVSHHISNFGFNCQWSKWAQGLPSPIDPSATNLQPKVVFLRELLKK 468
Query: 460 CVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSP 519
C RLSYHQRIK++VP A LP PHFK+ E LPG + +++L+ A++ Q+SP
Sbjct: 469 CFRLSYHQRIKDVVPDILADFLPPPVLPHFKFVDET---LPGAILSKDLLEAMRSPQASP 525
Query: 520 NEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEH 579
I I I SS+ G P+ LKI+VFTQ L+LGSKSFSH+F L K++ V K+
Sbjct: 526 EMISEI---IKSST----GIGPL--LKINVFTQNCLHLGSKSFSHTFGILRKYHSVFKDL 576
Query: 580 IGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPEFTKL 639
+ E Q+ VL +F++W Q V+ +K++ ++ SV WIF M+ E TK+
Sbjct: 577 VAGDPERQAAVLNGIFDVWVASDQYKFVVTEKLVTGLIIEPISVVRWIFGPSMRKELTKI 636
Query: 640 YVWEILHLTIKKMSKYVNRVGKELLDAKE 668
Y+WE+LH ++ + + ++ E++D +
Sbjct: 637 YIWELLHSALRHLKRVQQKI--EVVDVDD 663
Score = 76 (31.8 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 713 KNLFLIIFQRFIMILSEHLVRCDTDGVDFNT---HWYKWTIGRLQQVLLAHHEQVQKYSS 769
K + I QRF+ L C D T +W++W +GRL++ L + + + ++
Sbjct: 672 KGILFTIVQRFVKTL------CGAPFADEGTEEHYWFQWVLGRLEETLFIYADDFRVINN 725
Query: 770 TLETLLF-TQDLEPHILDVFHQFLA 793
L + DL P I F+A
Sbjct: 726 KLIKMSEDASDLRPEISKTIAAFVA 750
>UNIPROTKB|A6QNR9 [details] [associations]
symbol:LOC100124428 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0051028 "mRNA transport" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
eggNOG:NOG303489 PANTHER:PTHR12412 GeneTree:ENSGT00390000001733
EMBL:DAAA02023246 EMBL:BC148967 IPI:IPI00706915 UniGene:Bt.77239
SMR:A6QNR9 STRING:A6QNR9 Ensembl:ENSBTAT00000012833
HOVERGEN:HBG084570 InParanoid:A6QNR9 NextBio:20788718
Uniprot:A6QNR9
Length = 332
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 182/334 (54%), Positives = 230/334 (68%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
+RRR +E+DG + KRR+ + E ED E LI KVGE+S SLES+L+GLA VLE
Sbjct: 2 SRRRHSDENDGGQP--HKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA 59
Query: 63 DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNC 122
DL Y+ KILR+L A PEK IYTTLVGLLNA+NYNFGGEFVE M++ K++LK+
Sbjct: 60 DLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKSN 119
Query: 123 QWNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPW 182
+N A Y +RFL+DLVNCHVI+ S++ + EN + ++E+ VP VR+DWYVYA LS LPW
Sbjct: 120 NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPW 179
Query: 183 VGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKL 242
VG+ +R K HV LQVW+++KPHPQEEYLDCLWAQI KL
Sbjct: 180 VGKELYEKKDAEMDRIFASTENYLKRRQKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKL 239
Query: 243 RQDNWTDHHIYRPYTVFDSRLSVALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPE 302
++D W + HI RPY FDS L ALQHNLP PPH + +YPMP V+FRMFDYTD PE
Sbjct: 240 KKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPE 299
Query: 303 EPSISPLPGAHSIERFLIEEHLLQIIEMNYFERK 336
P +PG+HS+ERF+IEE+L II+ ++ ERK
Sbjct: 300 GPV---MPGSHSVERFVIEENLHCIIKSHWKERK 330
>DICTYBASE|DDB_G0269814 [details] [associations]
symbol:ncbp1 "nuclear cap-binding protein subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000339 "RNA cap
binding" evidence=IEA;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 dictyBase:DDB_G0269814 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0031047 GO:GO:0000398 Gene3D:1.25.40.180
GO:GO:0006370 GO:GO:0000339 HSSP:Q09161 eggNOG:NOG303489 KO:K12882
PANTHER:PTHR12412 RefSeq:XP_646314.1 ProteinModelPortal:Q55D17
STRING:Q55D17 PRIDE:Q55D17 EnsemblProtists:DDB0233457
GeneID:8617269 KEGG:ddi:DDB_G0269814 InParanoid:Q55D17 OMA:QSIENAP
ProtClustDB:CLSZ2729301 GO:GO:0005846 Uniprot:Q55D17
Length = 772
Score = 535 (193.4 bits), Expect = 9.4e-70, Sum P(2) = 9.4e-70
Identities = 133/446 (29%), Positives = 222/446 (49%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
N R P +G +R ++ + + LIV++G+++T+SLES++D LA L
Sbjct: 9 NFRGPRHSFNGQPSGRGNFQRHDPEEDFKSKLTSLIVRIGDKATSSLESNIDALANALLA 68
Query: 63 DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNC 122
D+ I IL C + K IY TLVGL+N KN FG E V +V A++
Sbjct: 69 DIPKQSSLIQDILFKCVSSLTYKTPIYATLVGLINVKNSEFGKEVVCRLVDEIFSAMEKK 128
Query: 123 QWNAARYALRFLADLVNCHVISTNSLLQLLENMLDA-SKEDGVPNVRKDWYVYAVLSCLP 181
+++ A+ +RF+ +LVN +V++ N++ +L E +L + D PN + D++V+ VLS +P
Sbjct: 129 KFHNAKLLIRFIPELVNANVLTINAIFELYETLLSVLNTSDYTPN-KADYFVFLVLSTIP 187
Query: 182 WVGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVK 241
W+G RS Q +++ ++ L+ + QI
Sbjct: 188 WIGEHLSHNHSGQLDAVIEECESYIQSRSTGDKKFYQAYNNGYT---DDRLESMLKQIKS 244
Query: 242 LRQ-DN-WTDHHIYRPYTVFDSRL--SVALQHNLPNIILPPHHDSLIYP--MPSVVFRMF 295
LR D W + I RPY F+ L S + QH LP I P + L YP + +FR+
Sbjct: 245 LRDCDQPWIVNGILRPYKHFNETLTSSSSQQHILPTIHFP-EDEKLEYPNNLNKPLFRVL 303
Query: 296 DYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCI 355
D +S+ER+++E++++ I+ + K+C+ + ++ ++ +
Sbjct: 304 S-ND-----------NNNSVERYIVEDYIIDILSFFNSDHKECSKFIYSLPVENEIDDIV 351
Query: 356 VEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFD 415
VE I GE+F LP P + I+Y + ++ K +P +P V A A +LF I ++ D
Sbjct: 352 VETILGEMFMLPEPTFKPIYYSVLFVDFFKSQPSVIP-VFAYAINLLFENIHKLDFEVMD 410
Query: 416 RFVAWFAYHLSNFQFQWSWEDWESAL 441
RF FA+HLSNF ++W W DW +L
Sbjct: 411 RFALAFAHHLSNFDYKWIWSDWAQSL 436
Score = 215 (80.7 bits), Expect = 9.4e-70, Sum P(2) = 9.4e-70
Identities = 58/204 (28%), Positives = 104/204 (50%)
Query: 452 FIHEVLNKCVRLSYHQRIKEIVPPQFAPLLPLKPEPHFKY-NQEGGEHLPGFVYAQ--EL 508
+I VL+ RLSY ++IK+ +P ++ LP P P FK+ N + E + A+ +L
Sbjct: 487 YIKRVLSSLCRLSYLEKIKQNLPSEYHQYLPPSPAPTFKFLNADNPEEESKELIAESHKL 546
Query: 509 INAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAA 568
+ + K K+ N I + N IPS IN +++ T+ +L +GS SFSH A
Sbjct: 547 LLSFKTKEPLENIISHVAN-IPSH---------INI--VELLTKCILQIGSTSFSHLTYA 594
Query: 569 LSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIF 628
+ ++ + K + ++ Q + +S+FE W Q + +++DK + ++++ W
Sbjct: 595 IERYITLFKTVLKSQDDRQECI-RSIFEFWKLSHQHIVIVVDKFVTFKIIYPIDTVTWFM 653
Query: 629 SKEMQPEF-TKLYVWEILHLTIKK 651
E F T+ + WE LH +I+K
Sbjct: 654 KPENIDRFITEPFTWECLHNSIQK 677
>TAIR|locus:2054137 [details] [associations]
symbol:ABH1 "ABA HYPERSENSITIVE 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006412 "translation" evidence=ISS] [GO:0009887 "organ
morphogenesis" evidence=NAS] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IDA]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
[GO:0048574 "long-day photoperiodism, flowering" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 GO:GO:0009737 GO:GO:0005634 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF48371
GO:GO:0003677 EMBL:AC007063 GO:GO:0048574 Gene3D:1.25.40.180
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 EMBL:AF272891
EMBL:AF268377 EMBL:AY064960 EMBL:BT000650 IPI:IPI00524102
PIR:C84508 RefSeq:NP_565356.1 UniGene:At.25306 HSSP:Q09161
ProteinModelPortal:Q9SIU2 SMR:Q9SIU2 IntAct:Q9SIU2 STRING:Q9SIU2
PaxDb:Q9SIU2 PRIDE:Q9SIU2 EnsemblPlants:AT2G13540.1 GeneID:815840
KEGG:ath:AT2G13540 TAIR:At2g13540 eggNOG:NOG303489
HOGENOM:HOG000029533 InParanoid:Q9SIU2 KO:K12882 OMA:LICRVGE
PhylomeDB:Q9SIU2 ProtClustDB:CLSN2688086 Genevestigator:Q9SIU2
GO:GO:0000394 PANTHER:PTHR12412 Uniprot:Q9SIU2
Length = 848
Score = 531 (192.0 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 145/539 (26%), Positives = 249/539 (46%)
Query: 142 VISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRXXXXXXXXXXXXXXXX 201
++ +LL +D K + + D+YV +LS LPW G
Sbjct: 124 IVVFETLLSSAATTVDEEKGNPSWQPQADFYVICILSSLPWGGSELAEQVPDEIERVLVG 183
Query: 202 XXXXXXKRSKKHVAALQVWSS---DKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTV 258
R + L + + + ++++++ L +I L + W + RP+
Sbjct: 184 IQAYLSIRKNSSTSGLNFFHNGEFESSLAEKDFVEDLLDRIQSLASNGWKLESVPRPHLS 243
Query: 259 FDSRLSVALQHNLPNIIL-----PPHHDSLIYPMPSVVFRMFDYTDCPEEPSISP---LP 310
F+++L H L I PP S Y + Y +I P +
Sbjct: 244 FEAQLVAGKFHELRPIKCMEQPSPPSDHSRAYSGKQKHDALTRYPQRIRRLNIFPANKME 303
Query: 311 GAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEIIFGELFRLPTPK 370
I+RF++EE+LL ++ RK+CA+ + + EY + E +F ++ LP P
Sbjct: 304 DVQPIDRFVVEEYLLDVLFYLNGCRKECASYMANLPVTFRYEYLMAETLFSQILLLPQPP 363
Query: 371 YLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFDRFVAWFAYHLSNFQF 430
+ ++Y V+++LCK P P V+A A LF +I ++ R + WF++HLSNFQF
Sbjct: 364 FKTLYYTLVIMDLCKALPGAFPAVVAGAVRALFEKISDLDMESRTRLILWFSHHLSNFQF 423
Query: 431 QWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPPQFA--PLLPLKPEPH 488
W WE+W L L PK F+ E+L + VRLSY +IK+ + A LLP K P+
Sbjct: 424 IWPWEEWAFVLDLPKWAPKRVFVQEILQREVRLSYWDKIKQSIENATALEELLPPKAGPN 483
Query: 489 FKYN-QEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGADPINPLKI 547
F Y+ +EG E + EL +K+KQ++ + I+ I E+ P++ ++
Sbjct: 484 FMYSLEEGKEKTEEQQLSAELSRKVKEKQTARDMIVWI----------EETIYPVHGFEV 533
Query: 548 D--VFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYVLKSLFELWHDHQQMM 605
+ Q LL +GSKSF+H L ++ +V + + + Q +L + W ++ QM
Sbjct: 534 TLTIVVQTLLDIGSKSFTHLVTVLERYGQVFSK-LCPDNDKQVMLLSQVSTYWKNNVQMT 592
Query: 606 AVLIDKMLKTQLLHCSSVANWIFSKEMQPEF-TKLYVWEILHLTIKKMSKYVNRVGKEL 663
AV ID+M+ +L+ ++ W+FS E +F WEIL + K ++ + K++
Sbjct: 593 AVAIDRMMGYRLVSNQAIVRWVFSPENVDQFHVSDQPWEILGNALNKTYNRISDLRKDI 651
Score = 214 (80.4 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 63/253 (24%), Positives = 118/253 (46%)
Query: 34 FEVLIVKVGERS----TTS-LESHLDGLAKVLETDLATYRVKILRILTDCATKYPEKCCI 88
++ L++++GE+ T+S + H++ V+ ++ ++L L CA + P K +
Sbjct: 4 WKTLLLRIGEKGPEYGTSSDYKDHIETCFGVIRREIERSGDQVLPFLLQCAEQLPHKIPL 63
Query: 89 YTTLVGLLNAKNYNFGGEFVELMVKTFKDALKNCQWNAARYALRFLADLVNCHVISTNSL 148
Y TL+GLLN +N +F + VE + F+ AL + N+ R LRF+ L+ VI SL
Sbjct: 64 YGTLIGLLNLENEDFVQKLVESVHANFQVALDSGNCNSIRILLRFMTSLLCSKVIQPASL 123
Query: 149 LQLLENMLDAS-----KEDGVPN--VRKDWYVYAVLSCLPWVGRXXXXXXXXXXXXXXXX 201
+ + E +L ++ +E G P+ + D+YV +LS LPW G
Sbjct: 124 IVVFETLLSSAATTVDEEKGNPSWQPQADFYVICILSSLPWGGSELAEQVPDEIERVLVG 183
Query: 202 XXXXXXKRSKKHVAALQVWSS---DKPHPQEEYLDCLWAQIVKLRQDNWTDHHIYRPYTV 258
R + L + + + ++++++ L +I L + W + RP+
Sbjct: 184 IQAYLSIRKNSSTSGLNFFHNGEFESSLAEKDFVEDLLDRIQSLASNGWKLESVPRPHLS 243
Query: 259 FDSRLSVALQHNL 271
F+++L H L
Sbjct: 244 FEAQLVAGKFHEL 256
Score = 45 (20.9 bits), Expect = 2.9e-50, Sum P(2) = 2.9e-50
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 708 AQADQKNLFLIIFQRFIMILSEHL 731
A ++ + L L++FQ F+ +L E L
Sbjct: 726 ALSETEVLLLLLFQSFLGVLKERL 749
>ASPGD|ASPL0000002953 [details] [associations]
symbol:AN6507 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005819 "spindle" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 EMBL:BN001301 EMBL:AACD01000109
GO:GO:0016070 Gene3D:1.25.40.180 eggNOG:NOG303489 KO:K12882
PANTHER:PTHR12412 OMA:QSIENAP OrthoDB:EOG4QC4DM RefSeq:XP_664111.1
ProteinModelPortal:Q5AYX3 STRING:Q5AYX3
EnsemblFungi:CADANIAT00007276 GeneID:2870281 KEGG:ani:AN6507.2
HOGENOM:HOG000200580 Uniprot:Q5AYX3
Length = 834
Score = 376 (137.4 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 89/310 (28%), Positives = 161/310 (51%)
Query: 356 VEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNTACFD 415
V+ +F +LF+LP+P++ ++Y SVL E CK+ P + L +A L+ ++ ++
Sbjct: 394 VDAVFSQLFQLPSPEHKLVYYHSVLTECCKIAPAAIAPSLGRAIRFLYRSLDVIDLELSH 453
Query: 416 RFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKEIVPP 475
RF+ WFA+HLSNF F W W +W L+L L HP+ FI+ L+K +RLS+ QRI+ +P
Sbjct: 454 RFLDWFAHHLSNFGFTWKWSEWIEDLELPLVHPRMAFINGALDKEIRLSFAQRIRGTLPD 513
Query: 476 QFAPLLPL---KPEPHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSS 532
+ L+ K P FKY + P +E++ I++K ++ +EI + I
Sbjct: 514 PYQDLISEGKEKDTPDFKY---ASDTTPYANEGREIMQLIRRK-AADDEIQPHITAIEER 569
Query: 533 SMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIG-HTEESQSYVL 591
+ P+ P D F + ++G+KS SH + + + + L IG + ++ ++
Sbjct: 570 AAGLGVEIPLLP-STDAFVTSICFVGAKSLSHVLSCIERNKERLLA-IGPRSPGARRQII 627
Query: 592 KSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSKEMQPE--FTKLYVWEILHLTI 649
S+ E W D + +IDK+L +L SV W + K +++E++ T+
Sbjct: 628 TSVMEYWVDQPGIGINIIDKLLNYTILTPLSVIEWALVDHLDAGTILAKTHIFEMISATV 687
Query: 650 KKMSKYVNRV 659
K++ + ++
Sbjct: 688 GKVTNRLRQI 697
Score = 98 (39.6 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
Identities = 73/350 (20%), Positives = 127/350 (36%)
Query: 4 RRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAK-VLET 62
R+R + +DD Y+R ++RRR E ++ R ++L + E + E +AK V E
Sbjct: 16 RKRRYRDDDDYDR--RQRRRYEEPLVVKVRRQLLTI--AESAARRAEDDALSIAKNVAEN 71
Query: 63 -DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKDALKN 121
+ R + + D + P K T V + N + + ++ V+ F+ +
Sbjct: 72 YEDEELRDNFIEVALDLVLEQPLKIPFIATTVLVANTIKSDLAADVLKHAVERFQHNVDA 131
Query: 122 CQWNAARYALRFLADLVNCHVISTNSLLQLLENMLD-------ASKED--GVPNVRKDWY 172
W + LRFL L C ++ + + +LE + AS ED G+ V+ Y
Sbjct: 132 GAWREVKLLLRFLGCL-QC-ILEGDGVFAILEELFSRAVDLQTASSEDLIGLELVKIILY 189
Query: 173 VYAVLSCLPWVGRXXXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYL 232
+ P G + S K +
Sbjct: 190 TIPYIMASPVSGFESQALGLLEKTDIIASTPHTLVDLANPFGP-----DSQKSATVPSVI 244
Query: 233 DCLWAQIVKLRQDNWTDHHIYRPYT-VFDS-----RLSVALQHNLPNIILP-PHHDSLIY 285
L +Q+ NW + RP+ V + RL +H LP+I +P P +
Sbjct: 245 SLLQSQLQAEASRNWELECLPRPWANVREGDEEPKRLEEGPKHVLPDITIPSPVLNGSRA 304
Query: 286 PMPSVVFRMFDYTDCPEEPSISPLPGAHSIERFLIEEHLLQIIEMNYFER 335
P V ++ D I +P +I L+ + L+ I + F R
Sbjct: 305 IFPEVFLSVYGDQD------IETVPSTSNIASSLLRDALVDTINIMDFNR 348
>UNIPROTKB|G4NH07 [details] [associations]
symbol:MGG_12123 "Cap binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF09088 Pfam:PF09090
SUPFAM:SSF48371 GO:GO:0016070 EMBL:CM001236 Gene3D:1.25.40.180
KO:K12882 PANTHER:PTHR12412 RefSeq:XP_003719884.1
ProteinModelPortal:G4NH07 EnsemblFungi:MGG_12123T0 GeneID:2677427
KEGG:mgr:MGG_12123 Uniprot:G4NH07
Length = 821
Score = 393 (143.4 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 94/321 (29%), Positives = 171/321 (53%)
Query: 352 EYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNT 411
E +V+ +F ++ +LP P++ +FY SVL E CK+ P + L +A ++ I +
Sbjct: 403 EDVVVDAVFSQILQLPRPEHKLVFYHSVLTETCKIAPAAIAPSLGRAIRHIYRNIPRHDL 462
Query: 412 ACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKE 471
RF+ WF++HLSNF F W W +W ++L HP FI L+K +RLS+ QRIK
Sbjct: 463 ELNHRFIDWFSHHLSNFGFTWKWVEWVDDVELPALHPLKAFIVGALDKEIRLSFAQRIKN 522
Query: 472 IVPPQFAPLLPLKPE---PHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNE-IMAILN 527
VP ++ L+ + E P FKY + +P +E+ N +KKK+ P+E I ++
Sbjct: 523 TVPDEYKSLIGPEKEIDVPEFKYKNDD---VPFASQGREIANLLKKKE--PDEAIQPLIE 577
Query: 528 KIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQ 587
+I + ++D+ G DP+ DVF +L +GSKS SH A + + L + + ++
Sbjct: 578 EIQNGAVDQ-GLDPL-VTSTDVFMTAVLAVGSKSLSHVLACIERVKDRLLDAGAASVAAR 635
Query: 588 SYVLKSLFELWHDHQQMMAVLIDKMLKTQLLHCSSVANWIFSK------EMQPEFTKL-- 639
V++++ W HQ + +++K+L +L + V W ++ + ++L
Sbjct: 636 IQVIEAVMAYWSAHQGVALSIVEKLLNYAILTPAVVVEWAVGAGRGAVTAIEDDESRLAQ 695
Query: 640 -YVWEILHLTIKKMSKYVNRV 659
+++E++ T++K++ V +V
Sbjct: 696 DHIYELVLNTVRKVTGRVRQV 716
Score = 58 (25.5 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
Identities = 32/143 (22%), Positives = 56/143 (39%)
Query: 4 RRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVK--VGERSTTSLESHLDGLAK--- 58
R+R + +DD Y R RR + F + I K +G + + + H D ++
Sbjct: 20 RKRRYNDDDDYGRNRGGGRRRHDGSSHAPPF-IRIRKQLLGLAESAARKWHEDVVSVSRL 78
Query: 59 VLET-DLATYRVKILRILTDCATKYPEKCCIYTTLVGLLNAKNYNFGGEFVELMVKTFKD 117
V+E D R L ++ + P K +V + N E + + K +
Sbjct: 79 VVENYDDEFVRNGFLDLVCQLVVEQPLKTPFVAAVVLVTNTLKSELVAELLARVGKALET 138
Query: 118 ALKNCQWNAARYALRFLADLVNC 140
A+ +W + L+ LA L C
Sbjct: 139 AITAGEWRDVKALLKLLACLQTC 161
>POMBASE|SPAC6G10.07 [details] [associations]
symbol:SPAC6G10.07 "nuclear cap-binding complex large
subunit (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISO] [GO:0000243 "commitment
complex" evidence=ISO] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005846 "nuclear cap binding complex" evidence=ISO] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] InterPro:IPR003890 InterPro:IPR015172
InterPro:IPR015174 InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088 Pfam:PF09090
SMART:SM00543 PomBase:SPAC6G10.07 GO:GO:0005829 GO:GO:0048471
EMBL:CU329670 SUPFAM:SSF48371 GO:GO:0000184
GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0003677 GO:GO:0003729
GO:GO:0051028 GO:GO:0000243 Gene3D:1.25.40.180 GO:GO:0045292
eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412 GO:GO:0005846
PIR:T39057 RefSeq:NP_594104.1 ProteinModelPortal:O14253
STRING:O14253 EnsemblFungi:SPAC6G10.07.1 GeneID:2542556
KEGG:spo:SPAC6G10.07 OMA:ENETHPL OrthoDB:EOG4QC4DM NextBio:20803608
Uniprot:O14253
Length = 780
Score = 370 (135.3 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 86/309 (27%), Positives = 154/309 (49%)
Query: 352 EYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMNT 411
E IVE + GEL Y ++Y S+LIE C++ P + + +++ +
Sbjct: 376 EDIIVEAVLGELLGSQNTTYKPVYYHSLLIECCRIAPKILAPTFGRVIRLMYTMSSDLPL 435
Query: 412 ACFDRFVAWFAYHLSNFQFQWSWEDWESALKLDLEHPKPKFIHEVLNKCVRLSYHQRIKE 471
DRF+ WF++HLSNF F W W +W ++LD HPK F+ E + + + LSY+ RI +
Sbjct: 436 QTLDRFIDWFSHHLSNFNFHWKWNEWIPDVELDDLHPKKVFMRETITRELILSYYTRISD 495
Query: 472 IVPPQFAPLLPLKPE-PHFKYNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIP 530
+P + LL +P P+F Y E H P + + ++I A++ + P E + I+ +
Sbjct: 496 SLPEELRCLLGEQPSGPNFVYENE--TH-PLYQQSSQIIEALRLHK--PLEELDII--LQ 548
Query: 531 SSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTEESQSYV 590
S + + + ++ LGS+SFSH+ K LK + +S+ V
Sbjct: 549 SEEIQNSETSAVRLVMSCAYS-----LGSRSFSHALNVFEKHLNTLKHFSRKSLDSEIEV 603
Query: 591 LKSLFELWHDHQQMMAVL-IDKMLKTQLLHCSSVANWIFSKEMQPEFTKLYVWEILHLTI 649
+ LF W Q AV+ +DKML ++ +S+ W+ +++ +++ Y W +++ T
Sbjct: 604 VDELFSFWK-LQPFNAVMWLDKMLNYSIISITSIIEWLIKQDVTI-WSRSYTWSLVNTTF 661
Query: 650 KKMSKYVNR 658
K++ + R
Sbjct: 662 NKLAARLRR 670
Score = 80 (33.2 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 48/221 (21%), Positives = 84/221 (38%)
Query: 127 ARYALRFLADLVNCHVISTNSLLQLLENMLDASKEDGVPNVRKDWYVYAVLSCLPWVGRX 186
A+ LR L + + +L L + DA ++ P+V D ++ +L LP+
Sbjct: 133 AKVDLRML--ICMSFALQPGTLKPLFSLLADAISKETKPSVWGDNFLRIILINLPYFIAA 190
Query: 187 XXXXXXXXXXXXXXXXXXXXXKRSKKHVAALQVWSSDKPHPQEEYLDCLWAQIVKLRQDN 246
+ K + L S + EE LD L+ Q++ R+++
Sbjct: 191 NNDLGKKDFANEILDQCEIYVRHRKSSIT-LSNPLSIHDNLSEEELDLLYKQLILSREND 249
Query: 247 WTDHHIYRPYTVFDSRLS--VALQHNLPNIILPPHHDSLIYPMPSVVFRMFDYTDCPEEP 304
+T +I +P+ F+S V + ++P P P F +F+ + P
Sbjct: 250 FTFPYISQPWKFFESDFVHIVPVSPSIPEWTFQPTPQQNELPSFKRFFELFNNFEIRTTP 309
Query: 305 SISPLPGAHSIERFLIEEHLLQIIEMNYFERKDCATQLLKY 345
S + A SI R I ++ +E N E T L Y
Sbjct: 310 DASDV--AASIFRD-ISVDVINHLEFNRVEAAQVLTDLDVY 347
>CGD|CAL0004925 [details] [associations]
symbol:GCR3 species:5476 "Candida albicans" [GO:0006110
"regulation of glycolysis" evidence=IGI] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0006397 "mRNA processing" evidence=IGI] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005819 "spindle" evidence=IEA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0006970 "response to osmotic stress"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 CGD:CAL0004925 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0006110 GO:GO:0006397 GO:GO:0006357
GO:GO:0003723 Gene3D:1.25.40.180 EMBL:AACQ01000177
EMBL:AACQ01000176 eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412
RefSeq:XP_711875.1 RefSeq:XP_711904.1 STRING:Q59QD1 GeneID:3646476
GeneID:3646485 KEGG:cal:CaO19.387 KEGG:cal:CaO19.8017
Uniprot:Q59QD1
Length = 886
Score = 228 (85.3 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 48/124 (38%), Positives = 75/124 (60%)
Query: 351 LEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMN 410
+E VE I +F+LP P +EI+Y +VLI C+ P+++ V +A + +E+++
Sbjct: 423 IEDVAVESILTMIFQLPNPLEVEIYYYTVLISCCRESPESIAPVFGRAIRYFYNHLETLD 482
Query: 411 TACFDRFVAWFAYHLSNFQFQWSWEDWES-ALKL-DLE-HPKPKFIHEVLNKCVRLSYHQ 467
RF+ W + LSNF+F W WE+W S + KL DL+ HPK FI ++ K +RLS +
Sbjct: 483 YELKIRFLDWMSIQLSNFEFSWKWEEWVSDSKKLKDLKYHPKKNFIKNLIAKEIRLSNKK 542
Query: 468 RIKE 471
RIK+
Sbjct: 543 RIKD 546
Score = 98 (39.6 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 53/269 (19%), Positives = 110/269 (40%)
Query: 20 KRRRVPENQELEDRFEVLIVKVGERSTT-SLESHLDGLAK--VLETD-LATYRVKILRIL 75
KR + QEL + I ++GE +L + + ++ V E + + R IL +
Sbjct: 31 KRHHIDPAQELINNICKDIRRLGEAGDIENLIADTNYISNPIVAEFEKIDNLRNSILSTI 90
Query: 76 TDCATKYPEKCCIYTTLVGLLNAKNY---NFGGEFVELMVKTFKDALKNCQWNAARYALR 132
T+ P K L+ + NAKN+ + E++ ++T D+ + +N + L+
Sbjct: 91 YALITEQPHKISAIANLILICNAKNFVIAKYVIEYLHSKMQTMLDSQEGSVFNDIKNILK 150
Query: 133 FLADLVNCHVISTNSLLQLLENML----DASKEDGVPNVRKDWYVYAVLSCLPWVGRXXX 188
FL+ L +I N ++Q+ + L + ++ V N Y VL +P+V
Sbjct: 151 FLSTLTP--IIEDNGIIQIFKQFLNFAIELQEQTEVRNGLAQEIYYNVLIAIPYVLSNDN 208
Query: 189 XXXXXXXXXXXXXXXXXXXKRSKKHVAAL----QVWSSDKPHPQEEYLDCLWAQIVKLRQ 244
++ L ++ + + P+ ++ +D + ++KL+
Sbjct: 209 SDDLKKSINELIELARNFKIVAESATVLLPFDTRMGNFELPYIPKQMVDLILPALIKLQN 268
Query: 245 DNWTDHHIYRPYTVFDSRLSVALQHNLPN 273
++W +R + F + L +Q L N
Sbjct: 269 NDWN----FRLFLDFKTHLDPVIQSALEN 293
Score = 48 (22.0 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 8/41 (19%), Positives = 26/41 (63%)
Query: 578 EHIGHTEES----QSYVLKSLFELWHDHQQMMAVLIDKMLK 614
E + TEE Q+++++++F +W Q++ ++++ +++
Sbjct: 717 EDLHFTEEEKQNRQNWIIEAVFRIWIHQPQVVFLILEYLIE 757
Score = 42 (19.8 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 527 NKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLK 577
N++ S ++ A I++ Q Y+GS+S + LS+ LK
Sbjct: 650 NELYKSVLESITAPNNERFAINLIIQTYAYIGSRSIYSVVSILSRDINKLK 700
>UNIPROTKB|Q59QD1 [details] [associations]
symbol:GCR3 "Likely nuclear cap-binding protein large
subunit" species:237561 "Candida albicans SC5314" [GO:0006110
"regulation of glycolysis" evidence=IGI] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0006397 "mRNA processing" evidence=IGI] InterPro:IPR003890
InterPro:IPR015172 InterPro:IPR015174 InterPro:IPR016021
InterPro:IPR016024 InterPro:IPR027159 Pfam:PF02854 Pfam:PF09088
Pfam:PF09090 SMART:SM00543 CGD:CAL0004925 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0006110 GO:GO:0006397 GO:GO:0006357
GO:GO:0003723 Gene3D:1.25.40.180 EMBL:AACQ01000177
EMBL:AACQ01000176 eggNOG:NOG303489 KO:K12882 PANTHER:PTHR12412
RefSeq:XP_711875.1 RefSeq:XP_711904.1 STRING:Q59QD1 GeneID:3646476
GeneID:3646485 KEGG:cal:CaO19.387 KEGG:cal:CaO19.8017
Uniprot:Q59QD1
Length = 886
Score = 228 (85.3 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 48/124 (38%), Positives = 75/124 (60%)
Query: 351 LEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMN 410
+E VE I +F+LP P +EI+Y +VLI C+ P+++ V +A + +E+++
Sbjct: 423 IEDVAVESILTMIFQLPNPLEVEIYYYTVLISCCRESPESIAPVFGRAIRYFYNHLETLD 482
Query: 411 TACFDRFVAWFAYHLSNFQFQWSWEDWES-ALKL-DLE-HPKPKFIHEVLNKCVRLSYHQ 467
RF+ W + LSNF+F W WE+W S + KL DL+ HPK FI ++ K +RLS +
Sbjct: 483 YELKIRFLDWMSIQLSNFEFSWKWEEWVSDSKKLKDLKYHPKKNFIKNLIAKEIRLSNKK 542
Query: 468 RIKE 471
RIK+
Sbjct: 543 RIKD 546
Score = 98 (39.6 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 53/269 (19%), Positives = 110/269 (40%)
Query: 20 KRRRVPENQELEDRFEVLIVKVGERSTT-SLESHLDGLAK--VLETD-LATYRVKILRIL 75
KR + QEL + I ++GE +L + + ++ V E + + R IL +
Sbjct: 31 KRHHIDPAQELINNICKDIRRLGEAGDIENLIADTNYISNPIVAEFEKIDNLRNSILSTI 90
Query: 76 TDCATKYPEKCCIYTTLVGLLNAKNY---NFGGEFVELMVKTFKDALKNCQWNAARYALR 132
T+ P K L+ + NAKN+ + E++ ++T D+ + +N + L+
Sbjct: 91 YALITEQPHKISAIANLILICNAKNFVIAKYVIEYLHSKMQTMLDSQEGSVFNDIKNILK 150
Query: 133 FLADLVNCHVISTNSLLQLLENML----DASKEDGVPNVRKDWYVYAVLSCLPWVGRXXX 188
FL+ L +I N ++Q+ + L + ++ V N Y VL +P+V
Sbjct: 151 FLSTLTP--IIEDNGIIQIFKQFLNFAIELQEQTEVRNGLAQEIYYNVLIAIPYVLSNDN 208
Query: 189 XXXXXXXXXXXXXXXXXXXKRSKKHVAAL----QVWSSDKPHPQEEYLDCLWAQIVKLRQ 244
++ L ++ + + P+ ++ +D + ++KL+
Sbjct: 209 SDDLKKSINELIELARNFKIVAESATVLLPFDTRMGNFELPYIPKQMVDLILPALIKLQN 268
Query: 245 DNWTDHHIYRPYTVFDSRLSVALQHNLPN 273
++W +R + F + L +Q L N
Sbjct: 269 NDWN----FRLFLDFKTHLDPVIQSALEN 293
Score = 48 (22.0 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 8/41 (19%), Positives = 26/41 (63%)
Query: 578 EHIGHTEES----QSYVLKSLFELWHDHQQMMAVLIDKMLK 614
E + TEE Q+++++++F +W Q++ ++++ +++
Sbjct: 717 EDLHFTEEEKQNRQNWIIEAVFRIWIHQPQVVFLILEYLIE 757
Score = 42 (19.8 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 527 NKIPSSSMDEDGADPINPLKIDVFTQVLLYLGSKSFSHSFAALSKFYKVLK 577
N++ S ++ A I++ Q Y+GS+S + LS+ LK
Sbjct: 650 NELYKSVLESITAPNNERFAINLIIQTYAYIGSRSIYSVVSILSRDINKLK 700
>SGD|S000004732 [details] [associations]
symbol:STO1 "Large subunit of the nuclear mRNA cap-binding
protein complex" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006970 "response to osmotic stress" evidence=IMP] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA;IDA;IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR015172 InterPro:IPR015174
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
Pfam:PF02854 Pfam:PF09088 Pfam:PF09090 SMART:SM00543 SGD:S000004732
GO:GO:0048471 SUPFAM:SSF48371 GO:GO:0000184 GO:GO:0003677
GO:GO:0003729 GO:GO:0006970 EMBL:BK006946 GO:GO:0005844
GO:GO:0051028 GO:GO:0000398 EMBL:Z49273 GO:GO:0000243
Gene3D:1.25.40.180 GO:GO:0006370 EMBL:Z48622 eggNOG:NOG303489
KO:K12882 PANTHER:PTHR12412 GeneTree:ENSGT00390000001733
GO:GO:0005846 EMBL:D10224 EMBL:L07650 EMBL:L27744 PIR:A44919
RefSeq:NP_013844.2 PDB:3UKY PDBsum:3UKY ProteinModelPortal:P34160
DIP:DIP-4434N IntAct:P34160 MINT:MINT-552943 STRING:P34160
PaxDb:P34160 PeptideAtlas:P34160 EnsemblFungi:YMR125W GeneID:855155
KEGG:sce:YMR125W CYGD:YMR125w2 HOGENOM:HOG000066047 OMA:RSLSHAN
OrthoDB:EOG44J5S6 NextBio:978566 Genevestigator:P34160
GermOnline:YMR125W Uniprot:P34160
Length = 861
Score = 178 (67.7 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 35/135 (25%), Positives = 71/135 (52%)
Query: 351 LEYCIVEIIFGELFRLPTPKYLEIFYGSVLIELCKMKPDTMPQVLAQATVILFMRIESMN 410
+E +E I G +F+LP+ ++ ++L+++C+ P + V +A + ++S++
Sbjct: 414 IEDLAIETILGLIFKLPSVSQPFAYFYTLLVDICQNSPKAIAPVFGRAFRFFYSHLDSLD 473
Query: 411 TACFDRFVAWFAYHLSNFQFQWSWEDWES-ALKLD--LEHPKPKFIHEVLNKCVRL-SYH 466
R++ WF+ +SNF F W W +WE ++K +PK F ++ K +RL S
Sbjct: 474 FELKLRYLDWFSIQMSNFNFSWKWNEWEDDSIKFGKYFYNPKVNFAKNLIQKELRLTSNF 533
Query: 467 QRIKEIVPPQFAPLL 481
+++ +P +F L
Sbjct: 534 SEVEDSLPQEFTKYL 548
Score = 75 (31.5 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 37/159 (23%), Positives = 69/159 (43%)
Query: 20 KRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLETDLAT---YRVKILRILT 76
KR+R+P +L I +GE S + E + L++ + + + +L L
Sbjct: 25 KRQRIPPVVQLCKEMMPDIRTIGE-SVKAFEDDIKFLSEAIMNEYGHEDYFNNALLSTLN 83
Query: 77 DCATKYPEKCCIYTTLVGLLNAKNYNFGGE------FVELMV---KTFKDALKNCQ---- 123
+ P+K L ++N+KN N G+ F EL +T+ D K+
Sbjct: 84 AVVVEQPQKQAAIALLTMVVNSKN-NVAGKSIINYFFEELQKWCKQTYNDEFKSTSNETG 142
Query: 124 -WNAARYALRFLADLVNCHVISTNSLLQLLENMLDASKE 161
WN + LRFL+ L ++ + L+ + +++ + S E
Sbjct: 143 PWNKIKLILRFLSILSPMFLV--DELINIYKSLFELSIE 179
Score = 63 (27.2 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 31/146 (21%), Positives = 65/146 (44%)
Query: 491 YNQEGGEHLPGFVYAQELINAIKKKQSSPNEIMAILNKIPSSSMDEDGA--DPINPLKID 548
+ QEG +P +++++ K +S E+ L I +E G+ N I
Sbjct: 583 FRQEG---VPMENTVRKILDYTHKANNS-REVTE-LESILGELKNEYGSIISDFNRFVII 637
Query: 549 VFTQVLLYLGSKSFSHSFAALSKFYKVLKEHIGHTE---ESQSYVL-KSLFELWHDHQQM 604
+ Q + GS+S SH+ ++ + LK E E++ Y++ +++ W+ + Q
Sbjct: 638 LLVQAVTDSGSRSLSHANKYINDLKEDLKTIFAKIELDIETKEYIIIEAVLTFWNANPQT 697
Query: 605 MAVLIDKMLKTQLLHCSSVANWIFSK 630
++ D LL ++ +IF++
Sbjct: 698 GFLVADAFKYAGLLTSRTIFTFIFNE 723
Score = 50 (22.7 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 322 EHLLQIIEMNYFERKDCATQLLKYNMKIPLEYCIVEII 359
E LL +E NY + L +YN + P E +VE++
Sbjct: 221 EELLAYVEQNYLVKTTDINLLREYNGEPPYE--MVELV 256
>UNIPROTKB|F2Z2T1 [details] [associations]
symbol:NCBP1 "Nuclear cap-binding protein subunit 1"
species:9606 "Homo sapiens" [GO:0000339 "RNA cap binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR016021 InterPro:IPR016024 InterPro:IPR027159
SUPFAM:SSF48371 GO:GO:0016070 Gene3D:1.25.40.180 PANTHER:PTHR12412
ChiTaRS:NCBP1 EMBL:AL445531 EMBL:AL162385 HGNC:HGNC:7658
IPI:IPI00982334 ProteinModelPortal:F2Z2T1 SMR:F2Z2T1
Ensembl:ENST00000478100 ArrayExpress:F2Z2T1 Bgee:F2Z2T1
Uniprot:F2Z2T1
Length = 82
Score = 175 (66.7 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
+RRR +E+DG + KRR+ + E ED E LI KVGE+S SLES+L+GLA VLE
Sbjct: 2 SRRRHSDENDGGQP--HKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA 59
Query: 63 DLATYRVKILRILTDCATKY 82
DL Y+ KILR+L + Y
Sbjct: 60 DLPNYKSKILRLLCTVSVFY 79
>UNIPROTKB|I3LJD7 [details] [associations]
symbol:I3LJD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051028 "mRNA transport" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000339 "RNA cap
binding" evidence=IEA] InterPro:IPR016021 InterPro:IPR016024
InterPro:IPR027159 SUPFAM:SSF48371 GO:GO:0016070 Gene3D:1.25.40.180
PANTHER:PTHR12412 GeneTree:ENSGT00390000001733 EMBL:CU915414
Ensembl:ENSSSCT00000026076 Uniprot:I3LJD7
Length = 85
Score = 173 (66.0 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 3 NRRRPHEEDDGYERAYKKRRRVPENQELEDRFEVLIVKVGERSTTSLESHLDGLAKVLET 62
+RRR +E+DG + KRR+ + E ED E LI KVGE+S SLES+L+GLA VLE
Sbjct: 2 SRRRHSDENDGGQP--HKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEA 59
Query: 63 DLATYRVKILRIL 75
DL Y+ KILR+L
Sbjct: 60 DLPNYKSKILRLL 72
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 796 741 0.00088 121 3 11 22 0.49 33
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 630 (67 KB)
Total size of DFA: 447 KB (2210 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 69.62u 0.11s 69.73t Elapsed: 00:00:14
Total cpu time: 69.63u 0.11s 69.74t Elapsed: 00:00:14
Start: Thu Aug 15 12:38:46 2013 End: Thu Aug 15 12:39:00 2013